1.2
13:04:2021 14:52
OBO-Edit 2.3.1
microbial_phenotype
select is_a closure
siegele
definition
expand assertion to
term replaced by
never_in_taxon
Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: ?X and (RO_0002162 some ?Y)
Class: ?X DisjointWith: RO_0002162 some ?Y
RO:0002161
external
never_in_taxon
never_in_taxon
true
true
is opposite_of
RO:0002604
is_opposite_of
is_opposite_of
quality
true
true
BRAND NAME
Involved_in
FORMULA
INN
IUPAC NAME
InChI
InChIKey
SMILES
SO feature annotation
Abnormal/normal slim
Absent/present slim
Attribute slim
cell_quality
Disposition slim
Grouping classes that can be excluded
Aspergillus GO slim
Candida GO slim
Generic GO slim
GOA and proteome slim
Metagenomics GO slim
PIR GO slim
Plant GO slim
Fission yeast GO slim
Viral GO slim
Yeast GO slim
Prokaryotic GO subset
Human phenotype slim
Catalytic activity terms in need of attention
Pathology slim
Term not to be used for direct annotation
Term not to be used for direct manual annotation
Relational slim: types of quality that require an additional entity in order to exist
Scalar slim
Systematic synonym
Value slim
Viral overhaul terms
subset_property
synonym_type_property
consider
has_alternative_id
has_broad_synonym
database_cross_reference
has_exact_synonym
has_narrow_synonym
has_obo_format_version
has_obo_namespace
has_related_synonym
has_scope
in_subset
shorthand
part_of
BFO:0000050
Example: amino_acid part_of polypeptide.
Used in FYPO to identify phenotypes that are always observed in the context of another, usually larger-scale, phenotype.
X part_of Y if X is a subregion of Y.
part_of
part_of
sequence
X part_of Y if X is a subregion of Y.
http://precedings.nature.com/documents/3495/version/1
has_part
BFO:0000051
Example: operon has_part gene.
Inverse of part_of.
Used in FYPO to link phenotypes that are collections of features to phenotypes representing the features.
has_part
has_part
sequence
Inverse of part_of.
http://precedings.nature.com/documents/3495/version/1
preceded_by
BFO:0000062
Used in FYPO when a phenotype is observed after another event, usually a GO biological process, has ended, and where there isn't a suitable process to use with a during relation.
microbial_phenotype
preceded_by
preceded_by
precedes
BFO:0000063
Used in FYPO when a phenotype is observed before another event, usually a GO biological process, begins, and where there isn't a suitable process to use with a during relation.
microbial_phenotype
precedes
precedes
occurs in
BFO:0000066
Used in FYPO to identify a location, usually a cellular component or cell type, within which a phenotype is observed or relevant.
microbial_phenotype
occurs_in
occurs_in
during
GOREL:0000002
Identifies a process, cell cycle stage or life stage during which a phenotype is observed or relevant.
during
during
microbial_phenotype
exists_during
GOREL:0000032
Identifies a process, cell cycle stage or life stage during which a phenotype that affects a continuant, such as a cellular component or the level of a substance, is observed or relevant.
exists_during
exists_during
microbial_phenotype
occurs_at
GOREL:0000501
This relation is not constrained with respect to whether the place where an event occurs completely surrounds, or is adjacent to, the location indicated. Example: chromatin silencing at centromere unfolds_around centromere : Repression of transcription of centromeric DNA by the formation of heterochromatin. Used in FYPO to identify a position where a phenotype is observed or relevant, usually a DNA or RNA sequence feature specified by a SO ID.
microbial_phenotype
occurs_at
occurs_at
inheres_in
RO:0000052
Used in FYPO as described in PATO best practices; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps).
inheres_in
inheres_in
microbial_phenotype
participates_in
RO:0000056
external
participates_in
participates_in
has role
RO:0000087
chebi_ontology
has_role
has_role
located in
RO:0001025
Used in FYPO to indicate where a physical quality phenotype is observed.
located_in
located_in
microbial_phenotype
happens_during
GOREL:0000001
Identifies a process, cell cycle stage or life stage during which a phenotype that affects an occurrent, i.e. a biological process or molecular function, is observed or relevant.
RO:0002092
external
happens_during
happens_during
ends_during
RO:0002093
ends_during
ends_during
external
regulates
RO:0002211
external
regulates
regulates
negatively regulates
RO:0002212
external
negatively_regulates
negatively_regulates
positively regulates
RO:0002213
external
positively_regulates
positively_regulates
has_output
Def comes from gorel file. Used in FYPO where one phenotype (p) always results in an additional phenotype (c) as a consequence. There may be other ways to get phenotype (c).
RO:0002234
has_output
has_output
microbial_phenotype
p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
GOC:curators
p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
inheres in part of
RO:0002314
Used in FYPO as described in MP/HP logical definition best practices for processes, and in an analogous manner for cell/cell part structure; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps).
inheres_in_part_of
inheres_in_part_of
microbial_phenotype
output_of
Inverse of has_output. Relation between a structure and a process that forms it, or between one process and a preceding process; A output_of B used where B has_output A isn't always true. Implies that process B is the only way to get output. Used in FYPO where one phenotype (c) always results when another phenotype (p) is present. Phenotype (p) may have other consequences in addition to phenotype (c).
RO:0002353
formation results from
microbial_phenotype
output_of
output_of
PomBase:mah
formation results from
towards
RO:0002503
Relation binding a relational quality or disposition to the relevant type of entity.
Relation binding a relational quality or disposition to the relevant type of entity. Used in FYPO as described in PATO best practices; identifies abolished GO processes; identifies substances affected by phenotypes.
quality
towards
towards
adjacent_to
A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap.
adjacent_to
sequence
A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap.
PMID:20226267
SO:ke
contains
2010-10-14T01:32:15Z
Example: pre_miRNA contains miRNA_loop.
The inverse of contained_by.
contains
kareneilbeck
sequence
PMID:20226267
The inverse of contained_by.
correlates_with
correlates_with
quality
decreased_in_magnitude_relative_to
This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'.
decreased_in_magnitude_relative_to
q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
quality
PATOC:CJM
q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
decreased_relative_to
2014-02-13T01:39:46Z
Marcus
P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P.
decreased_relative_to
microbial_phenotype
true
ECO:MCC
P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P.
derives_from
derives_from
sequence
different_in_magnitude_relative_to
different_in_magnitude_relative_to
q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
quality
PATOC:CJM
q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
directly_associated_with
2009-08-26T02:50:08Z
Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites.
Association is weaker than correlation or proportionality. These relations may be later added to PATO.
cjm
directly_associated_with
q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
quality
PATOC:cjm
Wikipedia:Association_(statistics)
q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
has_cross_section
Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.
has_cross_section
quality
s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
PATOC:CJM
s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
has_dividend_entity
has_dividend_entity
quality
has_dividend_quality
has_dividend_quality
quality
has_divisor_entity
has_divisor_entity
quality
has_divisor_quality
has_divisor_quality
quality
has functional parent
chebi_ontology
has_functional_parent
has_origin
has_origin
sequence
has parent hydride
chebi_ontology
has_parent_hydride
has_quality
The relationship between a feature and an attribute.
has_quality
sequence
has_ratio_quality
has_ratio_quality
quality
increased_in_magnitude_relative_to
This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.
increased_in_magnitude_relative_to
q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
quality
PATOC:CJM
q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
increased_relative_to
2014-02-13T01:41:08Z
Marcus
P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P.
increased_relative_to
microbial_phenotype
true
ECO:MCC
P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P.
inversely_associated_with
2009-08-26T02:50:24Z
Association is weaker than correlation or proportionality. These relations may be later added to PATO.
cjm
inversely_associated_with
q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
quality
PATOC:cjm
Wikipedia:Association_(statistics)
q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
is conjugate acid of
chebi_ontology
is_conjugate_acid_of
true
is conjugate base of
chebi_ontology
is_conjugate_base_of
true
is enantiomer of
chebi_ontology
is_enantiomer_of
true
is_magnitude_of
is_magnitude_of
pato.ontology
is_measurement_of
is_measurement_of
pato.ontology
is substituent group from
chebi_ontology
is_substituent_group_from
is tautomer of
chebi_ontology
is_tautomer_of
true
is_unit_of
is_unit_of
pato.ontology
member_of
A subtype of part_of. Inverse is collection_of. Winston, M, Chaffin, R, Herrmann: A taxonomy of part-whole relations. Cognitive Science 1987, 11:417-444.
member_of
sequence
non_functional_homolog_of
A relationship between a pseudogenic feature and its functional ancestor.
non_functional_homolog_of
sequence
A relationship between a pseudogenic feature and its functional ancestor.
SO:ke
overlaps
2010-10-14T01:33:15Z
Example: coding_exon overlaps CDS.
X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y.
kareneilbeck
overlaps
sequence
PMID:20226267
X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y.
qualifier
Used in FYPO as described in PATO best practices; placeholder relation to indicate normality/abnormality.
microbial_phenotype
qualifier
realized_by
quality
realized_by
reciprocal_of
There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.
q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.
quality
reciprocal_of
PATOC:CJM
q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.
similar_in_magnitude_relative_to
q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
quality
similar_in_magnitude_relative_to
PATOC:CJM
q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
singly_occurring_form_of
PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them.
monadic_form_of
quality
singly_occurring_form_of
transcribed_from
2009-08-19T12:05:39Z
Example: primary_transcript transcribed_from gene.
X is transcribed_from Y if X is synthesized from template Y.
kareneilbeck
sequence
transcribed_from
X is transcribed_from Y if X is synthesized from template Y.
http://precedings.nature.com/documents/3495/version/1
transcribed_to
2009-08-19T12:08:24Z
Example: gene transcribed_to primary_transcript.
Inverse of transcribed_from.
kareneilbeck
sequence
transcribed_to
Inverse of transcribed_from.
http://precedings.nature.com/documents/3495/version/1
variant_of
A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A.
Added to SO during the immunology workshop, June 2007. This relationship was approved by Barry Smith.
sequence
variant_of
A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A.
SO:immuno_workshop
chemical entity
A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
CHEBI:24431
chebi_ontology
A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
CHEBI:Team
biological role
A role played by the molecular entity or part thereof within a biological context.
CHEBI:24432
chebi_ontology
A role played by the molecular entity or part thereof within a biological context.
CHEBI:Team
pesticide
CHEBI:25944
Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests.
Wikipedia:Pesticide
chebi_ontology
CHEBI:Team
Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests.
application
CHEBI:33232
Intended use of the molecular entity or part thereof by humans.
chebi_ontology
CHEBI:Team
Intended use of the molecular entity or part thereof by humans.
antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
CHEBI:33281
antimicrobial
chebi_ontology
microbiocides
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
CHEBI:Team
role
A role is a particular behaviour which a material entity may exhibit.
CHEBI:50906
chebi_ontology
A role is a particular behaviour which a material entity may exhibit.
CHEBI:Team
reproduction
GO:0000003
GO:0019952
GO:0050876
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
Wikipedia:Reproduction
biological_process
reproductive physiological process
GOC:go_curators
GOC:isa_complete
GOC:jl
ISBN:0198506732
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
cilium or flagellum-dependent cell motility
Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella.
GO:0001539
Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC.
biological_process
ciliary or bacterial-type flagellar motility
ciliary/flagellar motility
Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella.
GOC:cilia
GOC:hjd
GOC:krc
cellular_component
GO:0005575
GO:0008372
NIF_Subcellular:sao1337158144
Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cellular component
cellular_component
subcellular entity
GOC:go_curators
NIF_Subcellular:sao-1337158144
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
NIF_Subcellular:nlx_subcell_100315
subcellular entity
cell
GO:0005623
NIF_Subcellular:sao1813327414
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
Wikipedia:Cell_(biology)
cellular_component
GOC:go_curators
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
nucleobase-containing compound metabolic process
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0006139
GO:0055134
biological_process
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism
nucleobase, nucleoside and nucleotide metabolic process
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GOC:ai
GOC:dph
GOC:tb
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
DNA metabolic process
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
DNA metabolism
GO:0006259
GO:0055132
biological_process
cellular DNA metabolism
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
ISBN:0198506732
DNA replication
GO:0006260
GO:0055133
Reactome:REACT_100559
Reactome:REACT_101280
Reactome:REACT_101497
Reactome:REACT_102679
Reactome:REACT_103614
Reactome:REACT_104547
Reactome:REACT_105292
Reactome:REACT_105467
Reactome:REACT_105835
Reactome:REACT_106018
Reactome:REACT_106104
Reactome:REACT_106382
Reactome:REACT_106434
Reactome:REACT_106732
Reactome:REACT_107075
Reactome:REACT_107423
Reactome:REACT_108461
Reactome:REACT_108634
Reactome:REACT_108739
Reactome:REACT_108768
Reactome:REACT_108929
Reactome:REACT_109137
Reactome:REACT_112472
Reactome:REACT_113703
Reactome:REACT_29423
Reactome:REACT_29444
Reactome:REACT_29691
Reactome:REACT_29764
Reactome:REACT_30149
Reactome:REACT_31024
Reactome:REACT_31919
Reactome:REACT_32546
Reactome:REACT_32932
Reactome:REACT_33572
Reactome:REACT_33874
Reactome:REACT_50018
Reactome:REACT_53588
Reactome:REACT_6729
Reactome:REACT_6738
Reactome:REACT_6750
Reactome:REACT_6769
Reactome:REACT_6798
Reactome:REACT_6869
Reactome:REACT_6936
Reactome:REACT_6939
Reactome:REACT_77532
Reactome:REACT_79188
Reactome:REACT_79450
Reactome:REACT_80432
Reactome:REACT_80571
Reactome:REACT_80896
Reactome:REACT_80988
Reactome:REACT_81803
Reactome:REACT_83095
Reactome:REACT_84829
Reactome:REACT_85561
Reactome:REACT_86410
Reactome:REACT_86739
Reactome:REACT_87233
Reactome:REACT_87449
Reactome:REACT_87590
Reactome:REACT_88085
Reactome:REACT_88384
Reactome:REACT_88529
Reactome:REACT_89355
Reactome:REACT_89439
Reactome:REACT_89725
Reactome:REACT_90512
Reactome:REACT_90809
Reactome:REACT_90838
Reactome:REACT_91184
Reactome:REACT_91302
Reactome:REACT_92527
Reactome:REACT_92644
Reactome:REACT_92706
Reactome:REACT_94983
Reactome:REACT_95253
Reactome:REACT_95329
Reactome:REACT_96115
Reactome:REACT_96804
Reactome:REACT_96998
Reactome:REACT_97204
Reactome:REACT_97726
Reactome:REACT_99948
See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'.
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Wikipedia:DNA_replication
biological_process
Recruitment of Rad17-RFC complex to DNA, Mus musculus
Reactome:REACT_32546
Loading of claspin onto DNA during replication origin firing, Danio rerio
Reactome:REACT_105467
Binding of ATR-ATRIP to the RPA-ssDNA complex, Canis familiaris
Reactome:REACT_87233
Activation of ATR in response to replication stress, Drosophila melanogaster
Reactome:REACT_108929
Loading of claspin onto DNA during replication origin firing, Rattus norvegicus
Reactome:REACT_31919
Activation of ATR in response to replication stress, Saccharomyces cerevisiae
Reactome:REACT_112472
Recruitment of Rad17-RFC complex to DNA, Homo sapiens
Reactome:REACT_6798
Recruitment of Rad17-RFC complex to DNA, Xenopus tropicalis
Reactome:REACT_31024
Loading of claspin onto DNA during replication origin firing, Xenopus tropicalis
Reactome:REACT_99948
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Dictyostelium discoideum
Reactome:REACT_33572
Loading of claspin onto DNA during replication origin firing, Homo sapiens
Reactome:REACT_6738
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Homo sapiens
Reactome:REACT_6729
Recruitment of Rad17-RFC complex to DNA, Canis familiaris
Reactome:REACT_81803
Activation of ATR in response to replication stress, Caenorhabditis elegans
Reactome:REACT_97726
Recruitment and activation of Chk1, Mus musculus
Reactome:REACT_96804
Binding of ATR-ATRIP to the RPA-ssDNA complex, Mus musculus
Reactome:REACT_96115
Recruitment and activation of Chk1, Homo sapiens
Reactome:REACT_6869
Recruitment and activation of Chk1, Danio rerio
Reactome:REACT_91184
Recruitment and activation of Chk1, Sus scrofa
Reactome:REACT_80896
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Drosophila melanogaster
Reactome:REACT_106382
Binding of ATR-ATRIP to the RPA-ssDNA complex, Homo sapiens
Reactome:REACT_6939
Binding of ATR-ATRIP to the RPA-ssDNA complex, Bos taurus
Reactome:REACT_106104
Activation of claspin, Gallus gallus
Reactome:REACT_88529
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Xenopus tropicalis
Reactome:REACT_92644
Activation of claspin, Rattus norvegicus
Reactome:REACT_30149
Activation of ATR in response to replication stress, Bos taurus
Reactome:REACT_108768
Recruitment and activation of Chk1, Xenopus tropicalis
Reactome:REACT_33874
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Bos taurus
Reactome:REACT_96998
Activation of ATR in response to replication stress, Taeniopygia guttata
Reactome:REACT_95253
Activation of ATR in response to replication stress, Canis familiaris
Reactome:REACT_91302
Stalling of DNA replication fork and RPA binding, Bos taurus
Reactome:REACT_90512
Activation of ATR in response to replication stress, Gallus gallus
Reactome:REACT_102679
Activation of ATR in response to replication stress, Schizosaccharomyces pombe
Reactome:REACT_29423
Stalling of DNA replication fork and RPA binding, Xenopus tropicalis
Reactome:REACT_94983
Loading of claspin onto DNA during replication origin firing, Bos taurus
Reactome:REACT_80988
Activation of ATR in response to replication stress, Dictyostelium discoideum
Reactome:REACT_79450
Recruitment and activation of Chk1, Rattus norvegicus
Reactome:REACT_86739
Loading of claspin onto DNA during replication origin firing, Mus musculus
Reactome:REACT_108634
Activation of claspin, Homo sapiens
Reactome:REACT_6750
Recruitment and activation of Chk1, Taeniopygia guttata
Reactome:REACT_32932
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Gallus gallus
Reactome:REACT_113703
Activation of claspin, Mus musculus
Reactome:REACT_80571
Binding of ATR-ATRIP to the RPA-ssDNA complex, Rattus norvegicus
Reactome:REACT_85561
Activation of claspin, Canis familiaris
Reactome:REACT_106434
GOC:mah
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Stalling of DNA replication fork and RPA binding, Mus musculus
Reactome:REACT_86410
Activation of ATR in response to replication stress, Danio rerio
Reactome:REACT_107075
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Mus musculus
Reactome:REACT_92527
Stalling of DNA replication fork and RPA binding, Rattus norvegicus
Reactome:REACT_109137
Stalling of DNA replication fork and RPA binding, Canis familiaris
Reactome:REACT_77532
Stalling of DNA replication fork and RPA binding, Gallus gallus
Reactome:REACT_105835
Recruitment and activation of Chk1, Gallus gallus
Reactome:REACT_104547
Stalling of DNA replication fork and RPA binding, Taeniopygia guttata
Reactome:REACT_103614
Recruitment of Rad17-RFC complex to DNA, Taeniopygia guttata
Reactome:REACT_90838
Stalling of DNA replication fork and RPA binding, Danio rerio
Reactome:REACT_92706
Activation of ATR in response to replication stress, Xenopus tropicalis
Reactome:REACT_105292
Activation of claspin, Danio rerio
Reactome:REACT_89355
Activation of ATR in response to replication stress, Homo sapiens
Reactome:REACT_6769
Loading of claspin onto DNA during replication origin firing, Canis familiaris
Reactome:REACT_53588
Activation of claspin, Bos taurus
Reactome:REACT_101497
Loading of claspin onto DNA during replication origin firing, Drosophila melanogaster
Reactome:REACT_89725
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Caenorhabditis elegans
Reactome:REACT_107423
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Danio rerio
Reactome:REACT_90809
Binding of ATR-ATRIP to the RPA-ssDNA complex, Xenopus tropicalis
Reactome:REACT_108739
Recruitment of Rad17-RFC complex to DNA, Danio rerio
Reactome:REACT_83095
Loading of claspin onto DNA during replication origin firing, Gallus gallus
Reactome:REACT_97204
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Schizosaccharomyces pombe
Reactome:REACT_88384
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Rattus norvegicus
Reactome:REACT_50018
Loading of claspin onto DNA during replication origin firing, Taeniopygia guttata
Reactome:REACT_80432
Recruitment and activation of Chk1, Bos taurus
Reactome:REACT_108461
Activation of ATR in response to replication stress, Sus scrofa
Reactome:REACT_89439
Binding of ATR-ATRIP to the RPA-ssDNA complex, Danio rerio
Reactome:REACT_84829
Binding of ATR-ATRIP to the RPA-ssDNA complex, Taeniopygia guttata
Reactome:REACT_29444
Recruitment of Rad17-RFC complex to DNA, Bos taurus
Reactome:REACT_87590
Recruitment of Rad17-RFC complex to DNA, Gallus gallus
Reactome:REACT_106018
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Canis familiaris
Reactome:REACT_79188
Stalling of DNA replication fork and RPA binding, Homo sapiens
Reactome:REACT_6936
Activation of ATR in response to replication stress, Rattus norvegicus
Reactome:REACT_29691
Recruitment of Rad17-RFC complex to DNA, Rattus norvegicus
Reactome:REACT_87449
Recruitment and activation of Chk1, Canis familiaris
Reactome:REACT_106732
Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Taeniopygia guttata
Reactome:REACT_29764
Activation of claspin, Taeniopygia guttata
Reactome:REACT_95329
Activation of ATR in response to replication stress, Mus musculus
Reactome:REACT_100559
Activation of claspin, Xenopus tropicalis
Reactome:REACT_101280
Binding of ATR-ATRIP to the RPA-ssDNA complex, Gallus gallus
Reactome:REACT_88085
transcription, DNA-templated
DNA-dependent transcription
GO:0006350
GO:0006351
GO:0061018
GO:0061022
The cellular synthesis of RNA on a template of DNA.
Wikipedia:Transcription_(genetics)
biological_process
cellular transcription
cellular transcription, DNA-dependent
transcription
transcription regulator activity
transcription, DNA-dependent
GOC:txnOH
transcription, DNA-dependent
GOC:jl
GOC:txnOH
The cellular synthesis of RNA on a template of DNA.
translation
GO:0006412
GO:0006416
GO:0006453
GO:0043037
Reactome:REACT_100338
Reactome:REACT_100851
Reactome:REACT_101045
Reactome:REACT_101324
Reactome:REACT_1014
Reactome:REACT_103420
Reactome:REACT_105544
Reactome:REACT_29980
Reactome:REACT_33559
Reactome:REACT_77710
Reactome:REACT_79784
Reactome:REACT_81734
Reactome:REACT_81833
Reactome:REACT_82171
Reactome:REACT_83429
Reactome:REACT_83530
Reactome:REACT_86996
Reactome:REACT_95535
Reactome:REACT_96394
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Wikipedia:Translation_(genetics)
biological_process
protein anabolism
protein biosynthesis
protein biosynthetic process
protein formation
protein synthesis
protein translation
Translation, Taeniopygia guttata
Reactome:REACT_83429
Translation, Danio rerio
Reactome:REACT_79784
Translation, Homo sapiens
Reactome:REACT_1014
GOC:curators
protein biosynthetic process
Translation, Caenorhabditis elegans
Reactome:REACT_81833
Translation, Plasmodium falciparum
Reactome:REACT_103420
Translation, Schizosaccharomyces pombe
Reactome:REACT_81734
Translation, Dictyostelium discoideum
Reactome:REACT_101045
Translation, Arabidopsis thaliana
Reactome:REACT_105544
Translation, Mus musculus
Reactome:REACT_95535
Translation, Rattus norvegicus
Reactome:REACT_33559
Translation, Oryza sativa
Reactome:REACT_86996
Translation, Gallus gallus
Reactome:REACT_83530
GOC:go_curators
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Translation, Saccharomyces cerevisiae
Reactome:REACT_100851
Translation, Xenopus tropicalis
Reactome:REACT_82171
Translation, Escherichia coli
Reactome:REACT_96394
Translation, Bos taurus
Reactome:REACT_29980
Translation, Sus scrofa
Reactome:REACT_100338
Translation, Drosophila melanogaster
Reactome:REACT_77710
Translation, Canis familiaris
Reactome:REACT_101324
cellular aromatic compound metabolic process
GO:0006725
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
aromatic compound metabolism
aromatic hydrocarbon metabolic process
aromatic hydrocarbon metabolism
biological_process
GOC:ai
ISBN:0198506732
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
nitrogen compound metabolic process
GO:0006807
Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node.
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
biological_process
nitrogen compound metabolism
CHEBI:51143
GOC:go_curators
GOC:jl
ISBN:0198506732
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
cellular component movement
GO:0006928
Note that in GO cellular components include whole cells (cell is_a cellular component).
The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore.
biological_process
cell movement
cellular component motion
GOC:dgh
GOC:dph
GOC:jl
GOC:mlg
The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore.
GOC:dph
GOC:jl
cellular component motion
chemotaxis
GO:0006935
The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
Wikipedia:Chemotaxis
biological_process
taxis in response to chemical stimulus
ISBN:0198506732
The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
chromosome segregation
GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
Wikipedia:Chromosome_segregation
biological_process
chromosome division
chromosome transmission
GOC:jl
GOC:mah
GOC:mtg_cell_cycle
GOC:vw
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO:0000004
GO:0007582
GO:0008150
Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
Wikipedia:Biological_process
biological process
biological_process
physiological process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GOC:go_curators
GOC:isa_complete
metabolic process
GO:0008152
Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Wikipedia:Metabolism
biological_process
metabolic process resulting in cell growth
metabolism
metabolism resulting in cell growth
GOC:go_curators
ISBN:0198547684
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
biosynthetic process
GO:0009058
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Wikipedia:Anabolism
anabolism
biological_process
biosynthesis
formation
synthesis
GOC:curators
ISBN:0198547684
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
macromolecule biosynthetic process
GO:0009059
GO:0043284
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
biological_process
biopolymer biosynthetic process
macromolecule anabolism
macromolecule biosynthesis
macromolecule formation
macromolecule synthesis
CHEBI:33694
GOC:mah
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GOC:mtg_chebi_dec09
biopolymer biosynthetic process
energy taxis
GO:0009453
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
biological_process
energytaxis
taxis in response to energy source
GOC:jl
PMID:11029423
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
aerotaxis
GO:0009454
The directed movement of a motile cell or organism in response to environmental oxygen.
biological_process
taxis in response to atmospheric oxygen
GOC:jl
ISBN:0192801023
The directed movement of a motile cell or organism in response to environmental oxygen.
response to external stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
GO:0009605
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
response to environmental stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
GOC:hb
spore germination
GO:0009847
The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
biological_process
GOC:lr
The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
negative regulation of metabolic process
Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GO:0009892
biological_process
down regulation of metabolic process
down-regulation of metabolic process
downregulation of metabolic process
inhibition of metabolic process
negative regulation of metabolism
Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GOC:go_curators
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008151
GO:0009987
GO:0050875
biological_process
cell growth and/or maintenance
cell physiology
cellular physiological process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
GOC:isa_complete
gene expression
GO:0010467
Reactome:REACT_100537
Reactome:REACT_101147
Reactome:REACT_101952
Reactome:REACT_105649
Reactome:REACT_108313
Reactome:REACT_29068
Reactome:REACT_34240
Reactome:REACT_71
Reactome:REACT_78136
Reactome:REACT_78959
Reactome:REACT_79662
Reactome:REACT_85241
Reactome:REACT_85359
Reactome:REACT_86357
Reactome:REACT_89816
Reactome:REACT_91657
Reactome:REACT_91965
Reactome:REACT_93586
Reactome:REACT_93968
Reactome:REACT_94814
Reactome:REACT_98256
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
Wikipedia:Gene_expression
biological_process
Gene Expression, Canis familiaris
Reactome:REACT_86357
Gene Expression, Caenorhabditis elegans
Reactome:REACT_108313
Gene Expression, Mus musculus
Reactome:REACT_78136
Gene Expression, Dictyostelium discoideum
Reactome:REACT_93586
Gene Expression, Drosophila melanogaster
Reactome:REACT_105649
Gene Expression, Plasmodium falciparum
Reactome:REACT_79662
Gene Expression, Arabidopsis thaliana
Reactome:REACT_91657
Gene Expression, Oryza sativa
Reactome:REACT_85241
Gene Expression, Rattus norvegicus
Reactome:REACT_91965
Gene Expression, Sus scrofa
Reactome:REACT_101952
GOC:dph
GOC:tb
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
Gene Expression, Saccharomyces cerevisiae
Reactome:REACT_98256
Gene Expression, Homo sapiens
Reactome:REACT_71
Gene Expression, Danio rerio
Reactome:REACT_101147
Gene Expression, Taeniopygia guttata
Reactome:REACT_78959
Gene Expression, Bos taurus
Reactome:REACT_93968
Gene Expression, Staphylococcus aureus N315
Reactome:REACT_34240
Gene Expression, Escherichia coli
Reactome:REACT_29068
Gene Expression, Xenopus tropicalis
Reactome:REACT_100537
Gene Expression, Mycobacterium tuberculosis
Reactome:REACT_89816
Gene Expression, Schizosaccharomyces pombe
Reactome:REACT_94814
Gene Expression, Gallus gallus
Reactome:REACT_85359
regulation of gene expression
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
GO:0010468
Wikipedia:Regulation_of_gene_expression
biological_process
regulation of gene product expression
regulation of protein expression
GOC:curators
regulation of gene product expression
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
GOC:dph
GOC:tb
GOC:curators
regulation of protein expression
negative regulation of macromolecule metabolic process
Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0010605
biological_process
Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GOC:dph
GOC:tb
negative regulation of gene expression
Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
GO:0010629
biological_process
Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
GOC:dph
GOC:tb
RNA metabolic process
GO:0016070
RNA metabolism
Reactome:REACT_107259
Reactome:REACT_107652
Reactome:REACT_110289
Reactome:REACT_21257
Reactome:REACT_30579
Reactome:REACT_31367
Reactome:REACT_33720
Reactome:REACT_80071
Reactome:REACT_83630
Reactome:REACT_84169
Reactome:REACT_85788
Reactome:REACT_88316
Reactome:REACT_89992
Reactome:REACT_91556
Reactome:REACT_92152
Reactome:REACT_94876
Reactome:REACT_99403
Reactome:REACT_99885
The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
biological_process
Metabolism of RNA, Arabidopsis thaliana
Reactome:REACT_94876
Metabolism of RNA, Schizosaccharomyces pombe
Reactome:REACT_107652
Metabolism of RNA, Caenorhabditis elegans
Reactome:REACT_80071
Metabolism of RNA, Bos taurus
Reactome:REACT_91556
Metabolism of RNA, Homo sapiens
Reactome:REACT_21257
Metabolism of RNA, Danio rerio
Reactome:REACT_110289
Metabolism of RNA, Xenopus tropicalis
Reactome:REACT_30579
Metabolism of RNA, Rattus norvegicus
Reactome:REACT_99403
Metabolism of RNA, Plasmodium falciparum
Reactome:REACT_33720
Metabolism of RNA, Mus musculus
Reactome:REACT_88316
Metabolism of RNA, Oryza sativa
Reactome:REACT_85788
Metabolism of RNA, Canis familiaris
Reactome:REACT_84169
Metabolism of RNA, Sus scrofa
Reactome:REACT_107259
Metabolism of RNA, Drosophila melanogaster
Reactome:REACT_92152
ISBN:0198506732
The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Metabolism of RNA, Gallus gallus
Reactome:REACT_99885
Metabolism of RNA, Saccharomyces cerevisiae
Reactome:REACT_89992
Metabolism of RNA, Dictyostelium discoideum
Reactome:REACT_31367
Metabolism of RNA, Taeniopygia guttata
Reactome:REACT_83630
gene silencing
Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.
GO:0016458
Note that this process is the opposite of long-term maintenance of gene activation.
Wikipedia:Gene_silencing
biological_process
long-term maintenance of gene inactivation
Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.
GOC:dph
GOC:jid
GOC:tb
heterocycle biosynthetic process
GO:0018130
The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
biological_process
heterocycle anabolism
heterocycle biosynthesis
heterocycle formation
heterocycle synthesis
ISBN:0198547684
The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
regulation of metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GO:0019222
biological_process
regulation of metabolism
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GOC:go_curators
aromatic compound biosynthetic process
GO:0019438
The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring.
aromatic compound anabolism
aromatic compound biosynthesis
aromatic compound formation
aromatic compound synthesis
aromatic hydrocarbon biosynthesis
aromatic hydrocarbon biosynthetic process
biological_process
GOC:ai
The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring.
protein metabolic process
GO:0006411
GO:0019538
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
Wikipedia:Protein_metabolism
biological_process
protein metabolic process and modification
protein metabolism
protein metabolism and modification
GOC:ma
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
asexual reproduction
GO:0019954
The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process.
Wikipedia:Asexual_reproduction
biological_process
ISBN:0387520546
The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process.
cell cycle process
GO:0022402
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
biological_process
GOC:isa_complete
GOC:mtg_cell_cycle
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
cell differentiation
GO:0030154
The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
Wikipedia:Cellular_differentiation
biological_process
ISBN:0198506732
The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
sporulation resulting in formation of a cellular spore
GO:0030435
Note that the synonym 'spore differentiation', like the term name and definition, refers to differentiation into a spore rather than any subsequent developmental changes that a spore may undergo.
The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
Wikipedia:Sporogenesis
biological_process
cellular spore formation by sporulation
spore biosynthesis
spore differentiation
spore formation
GOC:mah
GOC:pamgo_curators
ISBN:0072992913
The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
GOC:dph
GOC:tb
cellular spore formation by sporulation
asexual sporulation
GO:0030436
The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species.
asexual spore formation
biological_process
mitotic spore formation
mitotic sporulation
GOC:mah
PMID:9529886
The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species.
envelope
A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers.
GO:0031975
cellular_component
A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers.
GOC:mah
GOC:pz
transposition
Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites.
GO:0032196
Wikipedia:Transposon
biological_process
Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites.
GOC:jp
ISBN:1555812090
developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
GO:0032502
biological_process
development
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
GOC:isa_complete
RNA biosynthetic process
GO:0032774
RNA anabolism
RNA biosynthesis
RNA formation
RNA synthesis
The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.
biological_process
GOC:mah
The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.
endospore formation
GO:0034301
The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions.
biological_process
GOC:ds
GOC:mah
ISBN:0470090278
The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions.
myxospore formation
GO:0034303
The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria.
biological_process
GOC:ds
ISBN:0122268008
The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria.
cellular nitrogen compound metabolic process
GO:0034641
Reactome:REACT_102000
Reactome:REACT_103710
Reactome:REACT_107293
Reactome:REACT_108179
Reactome:REACT_109042
Reactome:REACT_13
Reactome:REACT_28699
Reactome:REACT_29108
Reactome:REACT_32429
Reactome:REACT_33347
Reactome:REACT_34326
Reactome:REACT_55564
Reactome:REACT_77741
Reactome:REACT_82379
Reactome:REACT_86268
Reactome:REACT_90299
Reactome:REACT_91959
Reactome:REACT_93580
Reactome:REACT_95666
Reactome:REACT_98086
Reactome:REACT_99241
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
biological_process
cellular nitrogen compound metabolism
Metabolism of amino acids and derivatives, Mus musculus
Reactome:REACT_33347
Metabolism of amino acids and derivatives, Staphylococcus aureus N315
Reactome:REACT_34326
Metabolism of amino acids and derivatives, Drosophila melanogaster
Reactome:REACT_86268
GOC:mah
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
Metabolism of amino acids and derivatives, Schizosaccharomyces pombe
Reactome:REACT_99241
Metabolism of amino acids and derivatives, Gallus gallus
Reactome:REACT_55564
Metabolism of amino acids and derivatives, Saccharomyces cerevisiae
Reactome:REACT_28699
Metabolism of amino acids and derivatives, Dictyostelium discoideum
Reactome:REACT_98086
Metabolism of amino acids and derivatives, Taeniopygia guttata
Reactome:REACT_77741
Metabolism of amino acids and derivatives, Canis familiaris
Reactome:REACT_95666
Metabolism of amino acids and derivatives, Escherichia coli
Reactome:REACT_103710
Metabolism of amino acids and derivatives, Sus scrofa
Reactome:REACT_109042
Metabolism of amino acids and derivatives, Danio rerio
Reactome:REACT_93580
Metabolism of amino acids and derivatives, Oryza sativa
Reactome:REACT_90299
Metabolism of amino acids and derivatives, Xenopus tropicalis
Reactome:REACT_108179
Metabolism of amino acids and derivatives, Caenorhabditis elegans
Reactome:REACT_29108
Metabolism of amino acids and derivatives, Plasmodium falciparum
Reactome:REACT_91959
Metabolism of amino acids and derivatives, Bos taurus
Reactome:REACT_82379
Metabolism of amino acids and derivatives, Rattus norvegicus
Reactome:REACT_32429
Metabolism of amino acids and derivatives, Arabidopsis thaliana
Reactome:REACT_107293
Metabolism of amino acids and derivatives, Mycobacterium tuberculosis
Reactome:REACT_102000
Metabolism of amino acids and derivatives, Homo sapiens
Reactome:REACT_13
cellular macromolecule biosynthetic process
GO:0034645
GO:0034961
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.
biological_process
cellular biopolymer biosynthetic process
cellular macromolecule anabolism
cellular macromolecule biosynthesis
cellular macromolecule formation
cellular macromolecule synthesis
GOC:mah
cellular macromolecule formation
GOC:mah
cellular macromolecule biosynthesis
GOC:mah
cellular macromolecule anabolism
GOC:mtg_chebi_dec09
cellular biopolymer biosynthetic process
GOC:mah
cellular macromolecule synthesis
CHEBI:33694
GOC:mah
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.
nucleobase-containing compound biosynthetic process
GO:0034654
The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids.
biological_process
nucleobase, nucleoside, nucleotide and nucleic acid anabolism
nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis
nucleobase, nucleoside, nucleotide and nucleic acid formation
nucleobase, nucleoside, nucleotide and nucleic acid synthesis
GOC:mah
The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids.
growth
GO:0040007
GO:0048590
See also the biological process term 'cell growth ; GO:0016049'.
The increase in size or mass of an entire organism, a part of an organism or a cell.
biological_process
growth pattern
non-developmental growth
GOC:bf
GOC:ma
The increase in size or mass of an entire organism, a part of an organism or a cell.
GOC:mah
non-developmental growth
locomotion
GO:0040011
Self-propelled movement of a cell or organism from one location to another.
biological_process
GOC:dgh
Self-propelled movement of a cell or organism from one location to another.
response to chemical
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
GO:0042221
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
response to chemical stimulus
response to chemical substance
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
GOC:jl
GOC:dos
response to chemical stimulus
taxis
GO:0042330
The directed movement of a motile cell or organism in response to an external stimulus.
Wikipedia:Taxis
biological_process
directed movement in response to stimulus
GOC:jl
ISBN:0192801023
The directed movement of a motile cell or organism in response to an external stimulus.
cell projection
A prolongation or process extending from a cell, e.g. a flagellum or axon.
GO:0042995
cell process
cellular process
cellular projection
cellular_component
A prolongation or process extending from a cell, e.g. a flagellum or axon.
GOC:jl
http://www.cogsci.princeton.edu/~wn/
type IV pilus-dependent motility
Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility.
GO:0043107
TFP-dependent motility
TFP-dependent movement
biological_process
social gliding motility
twitching motility
type 4 pilus-dependent motility
type four pilus-dependent motility
Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility.
GOC:go_curators
PMID:12704238
heterocyst differentiation
GO:0043158
The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
biological_process
heterocyst biosynthesis
heterocyst cell differentiation
heterocyst formation
GOC:jl
The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
macromolecule metabolic process
GO:0043170
GO:0043283
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
biological_process
biopolymer metabolic process
macromolecule metabolism
CHEBI:33694
GOC:mah
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GOC:mtg_chebi_dec09
biopolymer metabolic process
sporulation
GO:0043934
The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
Wikipedia:Spore
biological_process
GOC:pamgo_curators
The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
asexual sporulation resulting in formation of a cellular spore
GO:0043936
The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
biological_process
GOC:pamgo_curators
The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
cellular metabolic process
GO:0044237
The chemical reactions and pathways by which individual cells transform chemical substances.
biological_process
cellular metabolism
intermediary metabolism
GOC:go_curators
The chemical reactions and pathways by which individual cells transform chemical substances.
GOC:mah
intermediary metabolism
primary metabolic process
GO:0044238
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
biological_process
primary metabolism
GOC:go_curators
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
http://www.metacyc.org
cellular biosynthetic process
GO:0044249
The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
biological_process
cellular anabolism
cellular biosynthesis
cellular formation
cellular synthesis
GOC:jl
The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
cellular macromolecule metabolic process
GO:0034960
GO:0044260
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
biological_process
cellular biopolymer metabolic process
cellular macromolecule metabolism
GOC:mtg_chebi_dec09
cellular biopolymer metabolic process
CHEBI:33694
GOC:mah
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
cellular protein metabolic process
GO:0044267
Reactome:REACT_101554
Reactome:REACT_102155
Reactome:REACT_105825
Reactome:REACT_106151
Reactome:REACT_108005
Reactome:REACT_109022
Reactome:REACT_17015
Reactome:REACT_32904
Reactome:REACT_34473
Reactome:REACT_80561
Reactome:REACT_81994
Reactome:REACT_82523
Reactome:REACT_85873
Reactome:REACT_86658
Reactome:REACT_89852
Reactome:REACT_91052
Reactome:REACT_93132
Reactome:REACT_96466
Reactome:REACT_99179
The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
biological_process
cellular protein metabolism
Metabolism of proteins, Taeniopygia guttata
Reactome:REACT_34473
Metabolism of proteins, Saccharomyces cerevisiae
Reactome:REACT_85873
Metabolism of proteins, Oryza sativa
Reactome:REACT_99179
Metabolism of proteins, Rattus norvegicus
Reactome:REACT_89852
Metabolism of proteins, Escherichia coli
Reactome:REACT_80561
Metabolism of proteins, Xenopus tropicalis
Reactome:REACT_106151
Metabolism of proteins, Dictyostelium discoideum
Reactome:REACT_105825
Metabolism of proteins, Arabidopsis thaliana
Reactome:REACT_102155
Metabolism of proteins, Bos taurus
Reactome:REACT_108005
Metabolism of proteins, Homo sapiens
Reactome:REACT_17015
Metabolism of proteins, Drosophila melanogaster
Reactome:REACT_86658
Metabolism of proteins, Canis familiaris
Reactome:REACT_32904
Metabolism of proteins, Plasmodium falciparum
Reactome:REACT_96466
GOC:jl
The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
Metabolism of proteins, Mus musculus
Reactome:REACT_93132
Metabolism of proteins, Gallus gallus
Reactome:REACT_101554
Metabolism of proteins, Sus scrofa
Reactome:REACT_81994
Metabolism of proteins, Schizosaccharomyces pombe
Reactome:REACT_109022
Metabolism of proteins, Caenorhabditis elegans
Reactome:REACT_91052
Metabolism of proteins, Danio rerio
Reactome:REACT_82523
cellular nitrogen compound biosynthetic process
GO:0044271
The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds.
biological_process
nitrogen compound anabolism
nitrogen compound biosynthesis
nitrogen compound formation
nitrogen compound synthesis
GOC:jl
ISBN:0198506732
The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
GO:0044464
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cellular subcomponent
cellular_component
protoplast
NIF_Subcellular:sao628508602
cellular subcomponent
Any constituent part of a cell, the basic structural and functional unit of all organisms.
GOC:jl
GOC:mah
protoplast
single-organism process
A biological process that involves only one organism.
GO:0044699
biological_process
single organism process
A biological process that involves only one organism.
GOC:jl
single-organism metabolic process
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
GO:0044710
biological_process
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
GOC:jl
single-organism biosynthetic process
A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism.
GO:0044711
biological_process
A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism.
GOC:jl
single-organism cellular process
Any process that is carried out at the cellular level, occurring within a single organism.
GO:0044763
biological_process
Any process that is carried out at the cellular level, occurring within a single organism.
GOC:jl
single-organism developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
GO:0044767
biological_process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
GOC:jl
cell cycle DNA replication
GO:0044786
The DNA-dependent DNA replication that takes place as part of the cell cycle.
biological_process
GOC:mtg_cell_cycle
The DNA-dependent DNA replication that takes place as part of the cell cycle.
heterocycle metabolic process
GO:0046483
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
biological_process
heterocycle metabolism
CHEBI:5686
ISBN:0198506732
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
negative regulation of biological process
Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GO:0043118
GO:0048519
biological_process
down regulation of biological process
down-regulation of biological process
downregulation of biological process
inhibition of biological process
negative regulation of physiological process
Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GOC:jid
anatomical structure formation involved in morphogenesis
GO:0048646
Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense.
The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
biological_process
formation of an anatomical structure involved in morphogenesis
GOC:dph
GOC:tb
formation of an anatomical structure involved in morphogenesis
GOC:dph
GOC:jid
GOC:tb
The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
cellular developmental process
A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition.
GO:0048869
biological_process
A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition.
GOC:isa_complete
cell motility
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
GO:0048870
biological_process
cell locomotion
cell movement
movement of a cell
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
GOC:dgh
GOC:dph
GOC:isa_complete
GOC:mlg
regulation of biological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GO:0050789
GO:0050791
biological_process
regulation of physiological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GOC:ai
GOC:go_curators
response to stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GO:0050896
GO:0051869
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
physiological response to stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GOC:ai
GOC:bf
localization
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location.
GO:0051179
biological_process
establishment and maintenance of cellular component location
establishment and maintenance of localization
establishment and maintenance of position
establishment and maintenance of substance location
establishment and maintenance of substrate location
localisation
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location.
GOC:ai
GOC:mah
localisation
regulation of macromolecule metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0060255
biological_process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GOC:dph
GOC:tb
biological regulation
Any process that modulates a measurable attribute of any biological process, quality or function.
GO:0065007
biological_process
regulation
Any process that modulates a measurable attribute of any biological process, quality or function.
GOC:dph
GOC:isa_complete
GOC:mah
GOC:pr
GOC:vw
organic substance metabolic process
GO:0071704
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
biological_process
organic molecular entity metabolic process
organic molecular entity metabolism
organic substance metabolism
CHEBI:50860
GOC:mah
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
bacterial-type flagellum-dependent cell motility
Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
GO:0071973
bacterial-type flagellar cell motility
biological_process
flagellin-based flagellar cell motility
Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
GOC:cilia
GOC:krc
GOC:mah
GOC:mah
flagellin-based flagellar cell motility
cell swimming
Cell motility that results in the smooth movement of a cell through a liquid medium.
GO:0071975
biological_process
cell swimming motility
Cell motility that results in the smooth movement of a cell through a liquid medium.
PMID:18461074
GOC:mah
cell swimming motility
cell gliding
Cell motility that results in the smooth movement of a cell along a solid surface.
GO:0071976
biological_process
cell gliding motility
GOC:mah
cell gliding motility
Cell motility that results in the smooth movement of a cell along a solid surface.
PMID:18461074
bacterial-type flagellum-dependent swarming motility
Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
GO:0071978
bacterial-type flagellar swarming motility
bacterial-type flagellum-mediated cell swarming
biological_process
Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
GOC:cilia
PMID:14527279
PMID:18461074
GOC:mah
bacterial-type flagellum-mediated cell swarming
nucleic acid metabolic process
Any cellular metabolic process involving nucleic acids.
GO:0090304
biological_process
Any cellular metabolic process involving nucleic acids.
GOC:dph
GOC:tb
archaeal or bacterial-type flagellum-dependent cell motility
Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. This term was added for mapping to the UniProt keyword "flagellar rotation". For manual annotation, please use one of the child terms of GO:0097588 that refer specifically to either archaeal- or bacterial-type flagella.
Cell motility due to movement of bacterial- or archaeal-type flagella.
GO:0097588
biological_process
Cell motility due to movement of bacterial- or archaeal-type flagella.
GOC:cilia
GOC:krc
organic cyclic compound metabolic process
GO:1901360
The chemical reactions and pathways involving organic cyclic compound.
biological_process
organic cyclic compound metabolism
GOC:TermGenie
The chemical reactions and pathways involving organic cyclic compound.
GOC:TermGenie
organic cyclic compound metabolism
organic cyclic compound biosynthetic process
GO:1901362
The chemical reactions and pathways resulting in the formation of organic cyclic compound.
biological_process
organic cyclic compound anabolism
organic cyclic compound biosynthesis
organic cyclic compound formation
organic cyclic compound synthesis
GOC:TermGenie
organic cyclic compound biosynthesis
GOC:TermGenie
The chemical reactions and pathways resulting in the formation of organic cyclic compound.
GOC:TermGenie
organic cyclic compound formation
GOC:TermGenie
organic cyclic compound synthesis
GOC:TermGenie
organic cyclic compound anabolism
organic substance biosynthetic process
GO:1901576
The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon.
biological_process
organic molecular entity anabolism
organic molecular entity biosynthesis
organic molecular entity biosynthetic process
organic molecular entity formation
organic molecular entity synthesis
organic substance anabolism
organic substance biosynthesis
organic substance formation
organic substance synthesis
GOC:TermGenie
GOC:pr
The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon.
GOC:TermGenie
organic molecular entity synthesis
GOC:TermGenie
organic molecular entity anabolism
GOC:TermGenie
organic molecular entity formation
GOC:TermGenie
organic molecular entity biosynthesis
microbial phenotype
2011-03-10T04:01:50Z
OMP:0000000
The observable manifestation of the genotype of a microbial cell or group of cells in an environment.
microbial_phenotype
OMP:MCC
The observable manifestation of the genotype of a microbial cell or group of cells in an environment.
motility phenotype
2011-03-10T06:55:06Z
A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
GO:0048870
OMP:0000001
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
OMP:MCC
cell motility
GO:0048870
decreased motility
2011-03-10T07:02:42Z
An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control.
OMP:0000002
PATO:0002297
microbial_phenotype
An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control.
OMP:MCC
cell arrangement phenotype
2011-04-14T02:30:07Z
A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another.
OMP:0000003
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another.
OMP:MCC
taxis phenotype
2011-04-14T03:29:20Z
A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus.
OMP:0000004
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus.
ISBN:0192800329
OMP:MCC
presence of motility
2011-04-14T03:35:35Z
A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another.
OMP:0000005
mchibucos
microbial_phenotype
motile
A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another.
OMP:MCC
presence of akinete formation
2011-04-26T02:51:36Z
An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete.
OMP:0000006
mchibucos
microbial_phenotype
An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete.
OMP:MCC
absence of akinete formation
2011-04-26T02:52:52Z
An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete.
OMP:0000007
mchibucos
microbial_phenotype
An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete.
OMP:MCC
presence of budding
2011-04-26T02:58:46Z
A budding phenotype where an organism reproduces by the process of budding.
OMP:0000008
mchibucos
microbial_phenotype
A budding phenotype where an organism reproduces by the process of budding.
OMP:MCC
decreased cell surface area-to-volume ratio
2020-07-22T22:22:03Z
OMP:0000009
microbial_phenotype
siegele
presence of heterocysts
2011-04-26T02:59:42Z
A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst.
OMP:0000010
mchibucos
microbial_phenotype
A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst.
OMP:MCC
absence of heterocysts
2011-04-26T02:59:42Z
A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst.
OMP:0000011
mchibucos
microbial_phenotype
A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst.
OMP:MCC
abolished spore germination efficiency
2011-04-26T03:01:38Z
A decreased spore germination phenotype where no spores germinate.
OMP:0000012
mchibucos
microbial_phenotype
A decreased spore germination phenotype where no spores germinate.
OMP:MCC
decreased endospore formation
2011-06-07T10:14:15Z
An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control.
OMP:0000013
mchibucos
microbial_phenotype
An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control.
OMP:JCH
increased endospore formation
2011-06-07T10:14:39Z
An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control.
OMP:0000014
mchibucos
microbial_phenotype
An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control.
OMP:JCH
decreased heterocyst formation
2011-04-26T03:05:35Z
A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control.
OMP:0000015
mchibucos
microbial_phenotype
A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control.
OMP:MCC
delayed spore germination
2011-04-26T03:07:11Z
A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period.
OMP:0000016
mchibucos
microbial_phenotype
A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period.
OMP:MCC
presence of endospore formation
2011-04-26T03:09:10Z
An endospore formation phenotype where the cell possesses the ability to form an endospore.
OMP:0000017
mchibucos
microbial_phenotype
An endospore formation phenotype where the cell possesses the ability to form an endospore.
OMP:MCC
absence of endospore formation
2011-04-26T03:09:25Z
An endospore formation phenotype where the cell does not possess the ability to form an endospore.
OMP:0000018
mchibucos
microbial_phenotype
An endospore formation phenotype where the cell does not possess the ability to form an endospore.
OMP:MCC
increased cell surface area-to-volume ratio
2020-07-22T22:22:03Z
OMP:0000019
microbial_phenotype
siegele
presence of myxospore formation
2011-04-26T03:10:51Z
A myxospore formation phenotype where an organism possesses the ability to form myxospores.
OMP:0000020
mchibucos
microbial_phenotype
A myxospore formation phenotype where an organism possesses the ability to form myxospores.
OMP:MCC
absence of myxospore formation
2011-04-26T03:10:51Z
A myxospore formation phenotype where an organism does not possess the ability to form myxospores.
OMP:0000021
mchibucos
microbial_phenotype
A myxospore formation phenotype where an organism does not possess the ability to form myxospores.
OMP:MCC
decreased myxospore formation
2011-04-26T03:10:51Z
An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control.
OMP:0000022
mchibucos
microbial_phenotype
An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control.
OMP:MCC
periplasmic flagellum/flagella
2011-06-07T11:12:48Z
A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.
OMP:0000023
axial fibril
axial filament
endoflagella
mchibucos
microbial_phenotype
A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.
ISBN:9780073402406
OMP:DAS
altered flagellum length
2011-06-07T11:19:56Z
An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control.
OMP:0000024
mchibucos
microbial_phenotype
An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control.
OMP:MCC
altered cell surface area-to-volume ratio variability
2020-07-22T22:23:15Z
OMP:0000025
microbial_phenotype
siegele
host-virus interaction phenotype
2011-06-06T02:39:55Z
A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus.
OMP:0000026
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
host-bacteriophage interaction phenotype
host-phage interaction phenotype
mchibucos
microbial_phenotype
A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus.
OMP:JCH
flagellum morphology phenotype
2011-04-26T03:26:26Z
A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell.
OMP:0000027
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
axial filament phenotype
mchibucos
microbial_phenotype
A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell.
OMP:MCC
decreased number of pili
2011-04-26T03:29:28Z
A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control.
OMP:0000028
decreased fimbriae formation
mchibucos
microbial_phenotype
A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control.
OMP:MCC
presence of flagellum
2011-04-26T03:29:34Z
A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments.
OMP:0000029
mchibucos
microbial_phenotype
A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments.
OMP:MCC
absence of flagellum
2011-04-26T03:29:50Z
A flagellum phenotype where the organism does not possess a flagellum or flagella.
OMP:0000030
mchibucos
microbial_phenotype
non-flagellated phenotype
A flagellum phenotype where the organism does not possess a flagellum or flagella.
OMP:MCC
altered flagellum shape
2011-04-26T03:41:37Z
An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control.
OMP:0000031
mchibucos
microbial_phenotype
An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control.
OMP:MCC
decreased cell surface area-to-volume ratio variability
2020-07-22T22:24:44Z
OMP:0000032
microbial_phenotype
siegele
absence of pilus
2011-04-26T03:44:01Z
A pilus phenotype where an organism does not possess a pilus.
OMP:0000033
fimbria absent
mchibucos
microbial_phenotype
A pilus phenotype where an organism does not possess a pilus.
OMP:MCC
presence of pilus
2011-04-26T03:44:22Z
A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions.
Fimbria (plural, fimbriae) is a common synonym for pilus (plural, pili).
OMP:0000034
fimbria present
mchibucos
microbial_phenotype
A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions.
OMP:MCC
malformed pilus
2011-04-26T03:44:34Z
A pilus phenotype where the cell possesses a pilus that was distorted during formation.
OMP:0000035
malformed fimbrium
mchibucos
microbial_phenotype
A pilus phenotype where the cell possesses a pilus that was distorted during formation.
OMP:MCC
increased amount of capsule
2011-06-07T10:53:11Z
An altered capsule phenotype where the amount of capsule is increased relative to a designated control.
OMP:0000036
mchibucos
microbial_phenotype
An altered capsule phenotype where the amount of capsule is increased relative to a designated control.
OMP:DAS
increased flagellum length
2011-06-07T11:25:05Z
An altered flagellum length phenotype where the length of the flagellum is longer than a designated control.
OMP:0000037
mchibucos
microbial_phenotype
An altered flagellum length phenotype where the length of the flagellum is longer than a designated control.
OMP:MCC
increased cell surface area-to-volume ratio variability
2020-07-22T22:24:44Z
OMP:0000038
microbial_phenotype
siegele
O2 effects on population growth phenotype
2011-06-06T03:36:04Z
A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment.
OMP:0000039
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment.
OMP:WAM
decreased cell size
2011-04-26T03:47:26Z
An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control.
OMP:0000040
mchibucos
microbial_phenotype
An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control.
OMP:MCC
increased cell size
2011-04-26T03:49:09Z
An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control.
OMP:0000041
mchibucos
microbial_phenotype
An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control.
OMP:MCC
anucleoid
2011-04-26T03:51:47Z
A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population.
OMP:0000042
mchibucos
microbial_phenotype
A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population.
OMP:DAS
nucleoid number phenotype
2011-04-26T03:53:34Z
A nucleoid phenotype dealing with the number of nucleoid regions in the cell.
OMP:0000043
mchibucos
microbial_phenotype
A nucleoid phenotype dealing with the number of nucleoid regions in the cell.
OMP:WAM
altered cell circularity
2020-07-22T22:30:41Z
Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2).
OMP:0000044
microbial_phenotype
siegele
Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2).
OMP:das
increased motility
2011-04-26T04:08:26Z
An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control.
OMP:0000045
PATO:0002298
mchibucos
microbial_phenotype
An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control.
OMP:MCC
presence of chemotaxis
2011-04-26T04:17:42Z
A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient.
OMP:0000046
mchibucos
microbial_phenotype
A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient.
OMP:MCC
aerotaxis phenotype
2011-04-26T04:18:11Z
A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2).
GO:0009454
OMP:0000047
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2).
ISBN:0192800329
OMP:MCC
aerotaxis
GO:0009454
chemotaxis phenotype
2011-04-26T04:27:11Z
A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient.
GO:0006935
OMP:0000048
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
ChEBI cross product candidate (and child terms).
mchibucos
microbial_phenotype
A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient.
ISBN:0198506732
OMP:MCC
presence of aerotaxis
2011-04-26T04:27:42Z
An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2).
OMP:0000049
mchibucos
microbial_phenotype
An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2).
OMP:MCC
decreased amount of capsule
2011-06-07T10:53:59Z
An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control.
OMP:0000050
mchibucos
microbial_phenotype
An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control.
OMP:DAS
decreased cell circularity
2020-07-22T22:32:02Z
OMP:0000051
microbial_phenotype
siegele
presence of positive chemotaxis
2011-04-26T04:42:14Z
A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical.
OMP:0000052
mchibucos
microbial_phenotype
A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical.
OMP:MCC
presence of negative chemotaxis
2011-04-26T04:42:14Z
A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical).
OMP:0000053
mchibucos
microbial_phenotype
repellent
A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical).
OMP:MCC
absence of positive chemotaxis
2011-04-26T04:42:14Z
An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical.
OMP:0000054
mchibucos
microbial_phenotype
An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical.
OMP:MCC
absence of negative chemotaxis
2011-04-26T04:42:14Z
An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical.
OMP:0000055
mchibucos
microbial_phenotype
An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical.
OMP:MCC
presence of positive aerotaxis
2011-04-26T04:44:17Z
A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen.
GO:0052131
OMP:0000056
mchibucos
microbial_phenotype
A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen.
OMP:MCC
presence of negative aerotaxis
2011-04-26T04:44:17Z
A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen.
GO:0052130
OMP:0000057
mchibucos
microbial_phenotype
A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen.
OMP:MCC
absence of positive aerotaxis
2011-04-26T04:44:17Z
An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2).
OMP:0000058
mchibucos
microbial_phenotype
An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2).
OMP:MCC
absence of negative aerotaxis
2011-04-26T04:44:17Z
An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2).
OMP:0000059
mchibucos
microbial_phenotype
An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2).
OMP:MCC
presence of quorum sensing
2011-04-26T05:02:51Z
A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
OMP:0000060
mchibucos
microbial_phenotype
A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
OMP:MCC
decreased virulence
2011-04-26T05:02:57Z
An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control.
OMP:0000061
PATO:0002147
less virulent
mchibucos
microbial_phenotype
An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control.
OMP:MCC
increased virulence
2011-04-26T05:03:12Z
An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control.
OMP:0000062
PATO:0002148
mchibucos
microbial_phenotype
more virulent
An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control.
OMP:MCC
absence of quorum sensing
2011-04-26T05:06:00Z
A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
OMP:0000063
mchibucos
microbial_phenotype
A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
OMP:MCC
increased cell circularity
2020-07-22T22:32:02Z
OMP:0000064
microbial_phenotype
siegele
absence of virulence
2011-04-26T05:06:35Z
A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host).
OMP:0000065
avirulence
incompatible interaction
mchibucos
microbial_phenotype
A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host).
OMP:MCC
abolished virulence
2011-04-26T05:09:24Z
A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished.
OMP:0000066
mchibucos
microbial_phenotype
A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished.
OMP:MCC
presence of motility by swarming
2011-02-02T03:28:43Z
A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces.
OMP:0000067
adrienne
microbial_phenotype
A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces.
OMP:MCC
virulence phenotype
2011-02-02T03:28:59Z
A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host).
APO:0000048
GO:0009405
OMP:0000068
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
infectious agent
microbial_phenotype
pathogen
A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host).
OMP:MCC
pathogenesis
GO:0009405
virulence
APO:0000048
quorum sensing phenotype
2011-02-07T03:47:50Z
A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves.
GO:0009372
OMP:0000069
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves.
GO:0009372
OMP:MCC
quorum sensing
GO:0009372
cell development phenotype
2011-02-02T03:11:48Z
A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition.
GO:0048869
OMP:0000070
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
cellular developmental process
GO:0048869
A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition.
OMP:MCC
cell morphology phenotype
2011-02-02T03:15:16Z
A microbial phenotype related to the form and structure of a microbial cell.
APO:0000050
OMP:0000071
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
A microbial phenotype related to the form and structure of a microbial cell.
OMP:MCC
cellular morphology
APO:0000050
filamentous
2011-02-02T03:31:35Z
A cell arrangement phenotype where cells are joined end-to-end in linear chains.
OMP:0000072
adrienne
microbial_phenotype
A cell arrangement phenotype where cells are joined end-to-end in linear chains.
OMP:MCC
cell shape phenotype
2011-02-02T03:18:02Z
A cell morphology phenotype where the trait in question is the shape of a cell.
APO:0000051
OMP:0000073
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
A cell morphology phenotype where the trait in question is the shape of a cell.
OMP:MCC
cell shape
APO:0000051
cell size phenotype
2011-02-02T03:18:19Z
A cell morphology phenotype where the trait in question is the size of a cell.
APO:0000052
OMP:0000074
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
A cell morphology phenotype where the trait in question is the size of a cell.
OMP:MCC
cell size
APO:0000052
coccus
2011-02-02T03:18:29Z
A spheroid cell phenotype where a cell is spherical or nearly spherical.
OMP:0000075
adrienne
microbial_phenotype
spherical-shaped
A spheroid cell phenotype where a cell is spherical or nearly spherical.
ISBN:9780073402406
OMP:MCC
rod-shaped cells
2011-02-02T03:18:47Z
A cylindrical cell phenotype where an organism has rod-shaped cells.
OMP:0000076
adrienne
bacillus
microbial_phenotype
A cylindrical cell phenotype where an organism has rod-shaped cells.
ISBN:9780073402406
OMP:MCC
vibrio
2011-02-02T03:19:31Z
A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral.
OMP:0000077
adrienne
microbial_phenotype
A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral.
ISBN:9780073402406
OMP:AEZ
flagellum arrangement phenotype
2011-02-02T03:43:16Z
A flagellum phenotype where the trait in question is the location of the flagellum on an organism.
OMP:0000078
adrienne
microbial_phenotype
A flagellum phenotype where the trait in question is the location of the flagellum on an organism.
OMP:MCC
monotrichous
2011-02-02T03:44:18Z
A flagellum distribution phenotype where an organism has a single flagellum.
OMP:0000079
adrienne
microbial_phenotype
single flagellum
A flagellum distribution phenotype where an organism has a single flagellum.
ISBN:9780073402406
amphitrichous
2011-02-02T03:45:34Z
A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell.
OMP:0000080
adrienne
microbial_phenotype
A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell.
ISBN:9780073402406
OMP:MCC
lophotrichous
2011-02-02T03:46:16Z
A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell.
OMP:0000081
adrienne
microbial_phenotype
A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell.
ISBN:9780073402406
peritrichous flagella
2011-02-02T03:46:44Z
A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface.
OMP:0000082
adrienne
microbial_phenotype
A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface.
ISBN:9780073402406
OMP:MCC
cell projection morphology phenotype
2011-02-02T03:47:44Z
A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell.
GO:0042995
OMP:0000083
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
adrienne
cell appendage phenotype
microbial_phenotype
A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell.
GO:0042995
OMP:MCC
cell projection
GO:0042995
pilus morphology phenotype
2011-02-02T03:47:57Z
A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell.
OMP:0000084
adrienne
fimbria phenotype
microbial_phenotype
GO:0009289
fimbria phenotype
A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell.
ISBN:9780073402406
OMP:MCC
cell envelope morphology phenotype
2011-02-02T03:49:03Z
A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope.
OMP:0000085
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope.
OMP:MCC
spiral cell shape
2011-02-02T03:19:47Z
A cell shape phenotype where a cell is helical or cork-screw shaped.
OMP:0000086
adrienne
curved rod
microbial_phenotype
spirillum
spirochete
vibrio
A cell shape phenotype where a cell is helical or cork-screw shaped.
OMP:MCC
facultative anaerobe
2011-06-06T03:42:26Z
A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present.
OMP:0000087
facultative aerobe
mchibucos
microbial_phenotype
ISBN:978-0134261928
facultative aerobe
A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present.
ISBN:9780073402406
OMP:WAM
filamentous colony
2011-06-07T12:08:48Z
A colony form phenotype characterized by growth of thin individual projections in the colony.
OMP:0000088
SNOMEDCT:31153000
mchibucos
microbial_phenotype
A colony form phenotype characterized by growth of thin individual projections in the colony.
OMP:WAM
budding phenotype
2011-02-02T03:23:41Z
An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism.
GO:0007114
OMP:0000089
adrienne
microbial_phenotype
cell budding
GO:0007114
An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism.
OMP:DAS
lifespan phenotype
2011-02-02T03:24:11Z
An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells.
OMP:0000090
adrienne
microbial_phenotype
An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells.
OMP:WAM
sporulation phenotype
2011-02-02T03:24:24Z
A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction.
GO:0043934
OMP:0000091
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction.
OMP:MCC
sporulation
GO:0043934
heterocyst formation phenotype
2011-02-02T03:24:43Z
A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
GO:0043158
OMP:0000092
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
heterocyst differentiation
GO:0043158
A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
DOI:10.1046/j.1469-8137.1999.00505.x
OMP:MCC
akinete formation phenotype
2011-02-02T03:25:02Z
A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell.
GO:0034302
OMP:0000093
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Akinetes typically are more resistant to dessication and other environmental stresses than vegetative cells.
adrienne
microbial_phenotype
akinete formation
GO:0034302
A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell.
OMP:MCC
doi:10.1046/j.1469-8137.1999.00505.x
endospore formation phenotype
2011-02-02T03:25:29Z
A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell.
FAO:0000019
GO:0034301
OMP:0000094
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
spore
FAO:0000019
A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell.
OMP:MCC
endospore formation
GO:0034301
spore germination phenotype
2011-02-02T03:25:47Z
A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
GO:0009847
OMP:0000095
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
spore germination
GO:0009847
A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
OMP:MCC
myxospore formation phenotype
2011-02-02T03:26:41Z
A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria.
GO:0034303
OMP:0000096
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
microbial_phenotype
myxospore formation
GO:0034303
A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria.
OMP:MCC
absence of chemotaxis
2011-02-02T03:28:13Z
A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient.
OMP:0000097
adrienne
microbial_phenotype
A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient.
OMP:MCC
altered virulence
2011-04-28T02:11:35Z
A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control.
OMP:0000098
PATO:0002146
compatible interaction
mchibucos
microbial_phenotype
virulence
A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control.
OMP:MCC
hemolysis test
2011-06-07T03:17:22Z
A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells.
OMP:0000099
mchibucos
microbial_phenotype
A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells.
OMP:WAM
colony morphology phenotype
2011-02-02T02:14:39Z
A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium.
APO:0000060
Adrienne
OMP:0000100
colony appearance phenotype
microbial_phenotype
colony appearance
APO:0000060
A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium.
ISBN:9780073302089
OMP:WAM
microbial communication phenotype
2011-02-07T03:45:44Z
A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated.
Adrienne
OMP:0000101
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated.
OMP:JCH
colony opacity phenotype
2011-06-07T12:18:14Z
A colony morphology phenotype dealing with the degree to which light can pass through a colony.
OMP:0000102
mchibucos
microbial_phenotype
A colony morphology phenotype dealing with the degree to which light can pass through a colony.
OMP:WAM
colony form phenotype
2011-02-02T02:41:50Z
A colony morphology phenotype dealing with the basic shape or form of a colony or colonies.
Adrienne
OMP:0000103
microbial_phenotype
A colony morphology phenotype dealing with the basic shape or form of a colony or colonies.
OMP:WAM
colony elevation phenotype
2011-02-02T02:42:12Z
A colony morphology phenotype dealing with the height or vertical growth of the colony.
Adrienne
OMP:0000104
microbial_phenotype
A colony morphology phenotype dealing with the height or vertical growth of the colony.
OMP:WAM
aerotolerant anaerobe
2011-06-06T03:43:38Z
A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present.
OMP:0000105
mchibucos
microbial_phenotype
A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present.
ISBN:9780073402406
OMP:WAM
colony sheen phenotype
2011-02-02T02:42:37Z
A colony surface phenotype characterized by a soft luster on the surface.
Adrienne
OMP:0000106
microbial_phenotype
A colony surface phenotype characterized by a soft luster on the surface.
OMP:JCH
colony pigmentation phenotype
2011-02-02T02:43:25Z
A colony morphology phenotype related to the color of a colony or colonies.
Adrienne
OMP:0000107
microbial_phenotype
A colony morphology phenotype related to the color of a colony or colonies.
OMP:WAM
colony optical phenotype
2011-02-02T02:43:46Z
A colony morphology phenotype dealing with the interaction of a colony or colonies and light.
Adrienne
OMP:0000108
microbial_phenotype
A colony morphology phenotype dealing with the interaction of a colony or colonies and light.
OMP:JCH
presence of mucoid colonies
2011-02-07T03:38:08Z
A mucoid colony phenotype where the colonies are mucoid.
Adrienne
OMP:0000109
microbial_phenotype
viscous colony texture
A mucoid colony phenotype where the colonies are mucoid.
ISBN:1555810489
OMP:WAM
OMP:WAM
viscous colony texture
opaque colony
2011-02-02T02:45:02Z
A colony opacity phenotype characterized by inability of light to pass through it.
Adrienne
OMP:0000110
SNOMED:P3-51350
microbial_phenotype
A colony opacity phenotype characterized by inability of light to pass through it.
OMP:WAM
presence of motility by swimming
2011-02-07T03:17:40Z
A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium.
In Bacteria and Archaea, motility by swimming is typically powered by a flagellum or flagella. In Protists, swimming motility is typically powered by cilia or flagella.
OMP:0000111
adrienne
microbial_phenotype
A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium.
OMP:MCC
presence of motility by gliding
2011-02-07T03:18:03Z
A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface.
OMP:0000112
adrienne
microbial_phenotype
A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface.
OMP:MCC
presence of motility by twitching
2011-02-07T03:18:13Z
A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili.
GO:0043107
OMP:0000113
Twitching motility of bacteria typically involves type IV pili.
adrienne
microbial_phenotype
type IV pilus-dependent motility
GO:0043107
A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili.
OMP:MCC
PMID:12142488
translucent colony
2011-02-02T02:45:20Z
A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance.
Adrienne
OMP:0000114
SNOMED:P3-51370
microbial_phenotype
semi-translucent
A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance.
OMP:WAM
transparent colony
2011-02-02T02:45:41Z
A colony opacity phenotype characterized by a clear appearance.
Adrienne
OMP:0000115
SNOMED:P3-51360
microbial_phenotype
A colony opacity phenotype characterized by a clear appearance.
OMP:WAM
pigmented colony
2011-02-02T02:46:17Z
A colony pigmentation phenotype where colonies are pigmented.
Adrienne
OMP:0000116
microbial_phenotype
A colony pigmentation phenotype where colonies are pigmented.
OMP:WAM
diplococcus
2011-02-18T02:29:12Z
A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane.
OMP:0000117
adrienne
microbial_phenotype
A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane.
ISBN:9780073402406
OMP:AEZ
streptococcus
2011-02-18T02:31:37Z
A cell arrangement phenotype where chains of coccus cells arise from division events in one plane.
OMP:0000118
adrienne
microbial_phenotype
A cell arrangement phenotype where chains of coccus cells arise from division events in one plane.
OMP:AEZ
tetrad
2011-02-18T02:33:22Z
A cell arrangement phenotype where squares of four coccus cells arise from division in two planes.
OMP:0000119
adrienne
microbial_phenotype
micrococcus arrangement
A cell arrangement phenotype where squares of four coccus cells arise from division in two planes.
OMP:AEZ
sarcina
2011-02-18T02:34:40Z
A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes.
OMP:0000120
adrienne
microbial_phenotype
A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes.
OMP:AEZ
staphylococcus
2011-02-18T02:39:34Z
A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes.
OMP:0000121
adrienne
microbial_phenotype
A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes.
OMP:AEZ
streptobacillus
2011-02-18T02:47:10Z
A cell arrangement phenotype where bacillis cells are arranged in chains.
OMP:0000122
adrienne
microbial_phenotype
A cell arrangement phenotype where bacillis cells are arranged in chains.
OMP:AEZ
coccobacillus cell shape
2011-02-18T02:48:21Z
A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod).
OMP:0000123
adrienne
microbial_phenotype
A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod).
ISBN:9780073402406
OMP:MCC
spirillum
2011-02-18T02:51:54Z
A spiral cell shape phenotype where a cell forms a rigid spiral.
OMP:0000124
adrienne
microbial_phenotype
A spiral cell shape phenotype where a cell forms a rigid spiral.
ISBN:9780073402406
OMP:AEZ
spirochete
2011-02-18T02:52:33Z
A spiral cell shape phenotype where a cell forms a flexible spiral.
OMP:0000125
adrienne
microbial_phenotype
A spiral cell shape phenotype where a cell forms a flexible spiral.
ISBN:9780073402406
OMP:AEZ
trichome-forming
2011-02-18T02:55:59Z
A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width.
OMP:0000126
adrienne
microbial_phenotype
A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width.
OMP:DAS
PMID:5318446
sheathed
2011-02-18T02:59:18Z
A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath.
OMP:0000127
adrienne
microbial_phenotype
A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath.
OMP:MCC
stalked cell shape
2011-02-18T02:59:38Z
A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol.
OMP:0000128
adrienne
microbial_phenotype
prosthecate bacterium
URL:http://en.wikipedia.org/wiki/Prosthecate_bacteria
prosthecate bacterium
A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol.
OMP:MCC
PMID:14245437
cuboidal cell shape
2011-02-18T02:59:57Z
A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell.
OMP:0000129
adrienne
microbial_phenotype
square
A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell.
OMP:MCC
star-shaped cell shape
2011-02-18T03:00:30Z
A cell shape phenotype where a cell has projections that form points.
OMP:0000130
adrienne
microbial_phenotype
A cell shape phenotype where a cell has projections that form points.
OMP:MCC
lobed cell shape
2011-02-18T03:00:58Z
A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes).
OMP:0000131
PATO:0001979
adrienne
microbial_phenotype
lobed
PATO:0001979
A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes).
OMP:MCC
pleomorphic cell shape
2011-02-18T03:01:18Z
A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form.
OMP:0000132
PATO:0001356
adrienne
microbial_phenotype
A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form.
ISBN:9780073402406
OMP:MCC
absence of motility
2011-02-18T03:33:32Z
A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another.
OMP:0000133
adrienne
microbial_phenotype
non-motile
A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another.
OMP:MCC
spherical akinete
2011-02-18T03:40:27Z
An akinete morphology phenotype where the organism forms a spherical akinete.
OMP:0000134
adrienne
microbial_phenotype
An akinete morphology phenotype where the organism forms a spherical akinete.
OMP:JCH
akinete envelope attribute
2011-02-18T03:41:16Z
An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane.
OMP:0000135
adrienne
microbial_phenotype
An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane.
OMP:JCH
in vitro nucleoid shape
2011-02-21T04:16:30Z
A nucleoid phenotype dealing with shape of the nucleoid region.
OMP:0000136
adrienne
microbial_phenotype
A nucleoid phenotype dealing with shape of the nucleoid region.
OMP:WAM
non-pigmented colony
2011-02-02T02:46:39Z
A colony pigmentation phenotype colonies are non-pigmented.
Adrienne
OMP:0000137
colorless colony
microbial_phenotype
A colony pigmentation phenotype colonies are non-pigmented.
OMP:WAM
altered cell circularity variability
2020-07-22T22:32:45Z
Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2).
OMP:0000138
microbial_phenotype
siegele
dull colony sheen
2011-02-02T02:47:21Z
A colony form phenotype characterized by a dull luster on the surface.
Adrienne
OMP:0000139
SNOMED:P3-513150
matte
microbial_phenotype
rough
A colony form phenotype characterized by a dull luster on the surface.
OMP:JCH
nucleoid spacing
2011-02-21T04:25:41Z
A nucleoid phenotype that describes the distribution of within a cell or cells.
OMP:0000140
adrienne
microbial_phenotype
A nucleoid phenotype that describes the distribution of within a cell or cells.
OMP:AZ
regular nucleoid spacing
2011-02-21T04:26:57Z
A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing.
OMP:0000141
adrienne
microbial_phenotype
A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing.
OMP:AZ
irregular nucleoid spacing
2011-02-21T04:27:22Z
A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing.
OMP:0000142
adrienne
microbial_phenotype
A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing.
OMP:AZ
single nucleoid
2011-02-21T04:27:48Z
A nucleoid number phenotype where there is only one nucleoid region in the cell.
OMP:0000143
adrienne
microbial_phenotype
A nucleoid number phenotype where there is only one nucleoid region in the cell.
OMP:WAM
multiple nucleoids
2011-02-21T04:28:30Z
A nucleoid number phenotype where there is more than one nucleoid regions in the cell.
OMP:0000144
adrienne
microbial_phenotype
A nucleoid number phenotype where there is more than one nucleoid regions in the cell.
OMP:WAM
nucleoid localization
2011-02-21T04:30:32Z
A nucleoid phenotype that describes the location of the nucleoid within a cell or cells.
OMP:0000145
adrienne
microbial_phenotype
A nucleoid phenotype that describes the location of the nucleoid within a cell or cells.
OMP:JCH
midcell nucleoid localization
2011-02-21T04:31:22Z
A nucleoid localization phenotype where the nucleoid is localized at the center of the cell.
OMP:0000146
adrienne
microbial_phenotype
A nucleoid localization phenotype where the nucleoid is localized at the center of the cell.
OMP:WAM
polar nucleoid localization
2011-02-21T04:31:46Z
A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell.
OMP:0000147
adrienne
microbial_phenotype
A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell.
OMP:WAM
quarter cell nucleoid localization
2011-02-21T04:32:04Z
A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell.
OMP:0000148
adrienne
microbial_phenotype
A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell.
OMP:AZ
colony margin phenotype
2011-02-02T02:47:43Z
A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification.
Adrienne
OMP:0000149
microbial_phenotype
A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification.
OMP:WAM
nucleoid phenotype
2011-02-21T04:36:21Z
A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined.
OMP:0000150
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
adrienne
genophore
microbial_phenotype
A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined.
OMP:MCC
entire margin
2011-02-02T02:47:59Z
A colony margin phenotype characterized by smooth growth, with no projections along the edge.
Adrienne
OMP:0000151
SNOMEDCT:12774002
microbial_phenotype
A colony margin phenotype characterized by smooth growth, with no projections along the edge.
OMP:WAM
doublet nucleoid
2011-02-22T02:27:29Z
A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell.
OMP:0000152
adrienne
dumbbell nucleoid
microbial_phenotype
A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell.
OMP:WAM
OMP:WAM
dumbbell nucleoid
singlet nucleoid
2011-02-22T02:27:58Z
A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted.
OMP:0000153
adrienne
microbial_phenotype
A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted.
OMP:WAM
undulate margin
2011-02-02T02:48:11Z
A colony margin phenotype characterized by wavy growth along the colony edge.
Adrienne
OMP:0000154
SNOMEDCT:48408000
microbial_phenotype
A colony margin phenotype characterized by wavy growth along the colony edge.
OMP:WAM
Bacterial colony morphology, undulate margin
SNOMEDCT:48408000
lobate margin
2011-02-02T02:48:33Z
A colony margin phenotype characterized by lobed growth along the colony edge.
Adrienne
OMP:0000155
SNOMEDCT:36580002
microbial_phenotype
A colony margin phenotype characterized by lobed growth along the colony edge.
OMP:WAM
erose margin
2011-02-02T02:48:46Z
A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony.
Adrienne
OMP:0000156
SNOMEDCT:86734000
microbial_phenotype
A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony.
OMP:WAM
filiform margin
2011-02-02T02:49:05Z
A colony margin phenotype characterized by thread or filamentous shaped edge.
Adrienne
OMP:0000157
SNOMEDCT:42844005
filamentous margin
microbial_phenotype
Bacterial colony morphology, filamentous margin
SNOMEDCT:42844005
A colony margin phenotype characterized by thread or filamentous shaped edge.
OMP:JCH
curled margin
2011-02-02T02:49:30Z
A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony.
Adrienne
OMP:0000158
SNOMEDCT:85764001
microbial_phenotype
A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony.
OMP:JCH
absence of aerotaxis
2011-03-02T02:06:09Z
An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2).
OMP:0000159
adrienne
microbial_phenotype
An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2).
OMP:MCC
flat colony elevation
2011-02-02T02:49:49Z
A colony elevation phenotype characterized by no growth above the medium.
Adrienne
OMP:0000160
SNOMED:P3-51130
microbial_phenotype
A colony elevation phenotype characterized by no growth above the medium.
OMP:WAM
raised colony elevation
2011-02-02T02:50:01Z
A colony elevation phenotype characterized by uniform growth above the medium.
Adrienne
OMP:0000161
SNOMED:P3-51140
microbial_phenotype
A colony elevation phenotype characterized by uniform growth above the medium.
OMP:WAM
convex colony elevation
2011-02-02T02:50:11Z
A colony elevation phenotype characterized by sloping up from the edges.
Adrienne
OMP:0000162
SNOMEDCT:26875006
microbial_phenotype
A colony elevation phenotype characterized by sloping up from the edges.
OMP:WAM
Bacterial colony elevation, convex
SNOMEDCT:26875006
pulvinate colony elevation
2011-02-02T02:50:30Z
A colony elevation phenotype characterized by sloping steeply from edges and very high in the center.
Adrienne
OMP:0000163
microbial_phenotype
A colony elevation phenotype characterized by sloping steeply from edges and very high in the center.
OMP:WAM
umbonate colony elevation
2011-02-02T02:50:42Z
A colony elevation phenotype characterized by raised growth in the center.
Adrienne
OMP:0000164
SNOMEDCT:70929009
microbial_phenotype
Bacterial colony elevation, umbonate
SNOMEDCT:70929009
A colony elevation phenotype characterized by raised growth in the center.
OMP:WAM
increased colony size
2011-06-07T01:55:00Z
A colony size phenotype where colony size is increased relative to a designated control.
OMP:0000165
mchibucos
microbial_phenotype
A colony size phenotype where colony size is increased relative to a designated control.
OMP:JCH
circular colony
2011-02-02T02:51:18Z
A colony form phenotype characterized by growth in a round shape.
Adrienne
OMP:0000166
SNOMEDCT:64781005
microbial_phenotype
A colony form phenotype characterized by growth in a round shape.
OMP:WAM
irregular colony
2011-02-02T02:51:35Z
A colony form phenotype characterized by growth without a defined shape or size.
Adrienne
OMP:0000167
SNOMEDCT:39696006
microbial_phenotype
A colony form phenotype characterized by growth without a defined shape or size.
OMP:WAM
rhizoid colony
2011-02-02T02:51:57Z
A colony form phenotype characterized by the growth of thin, branching projections.
Adrienne
OMP:0000168
SNOMEDCT:113047000
microbial_phenotype
A colony form phenotype characterized by the growth of thin, branching projections.
OMP:WAM
spindle colony
2011-02-02T02:52:30Z
A colony form phenotype characterized by growth being wide in the middle then tapering at both ends.
Adrienne
OMP:0000169
SNOMEDCT:77324006
microbial_phenotype
A colony form phenotype characterized by growth being wide in the middle then tapering at both ends.
OMP:JCH
decreased cell circularity variability
2020-07-22T22:34:00Z
OMP:0000170
microbial_phenotype
siegele
microaerophile
2011-06-06T03:44:11Z
An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%).
A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2.
OMP:0000171
Optimal oxygen levels for growth of typical microaerophilic bacteria is 2 to 10% O2, and growth is impaired by atmospheric oxygen levels (approx. 21%).
mchibucos
microbial_phenotype
An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%).
A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2.
ISBN:9780073402406
OMP:WAM
response to chemical stimulus phenotype
2011-06-06T04:16:08Z
A stress response phenotype dealing with the response to exposure to chemical stimuli.
OMP:0000172
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A stress response phenotype dealing with the response to exposure to chemical stimuli.
OMP:WAM
response to stress phenotype
2011-02-02T03:13:32Z
A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Adrienne
OMP:0000173
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
FYPO:0002549
GO:0006950
OMP:WAM
growth phenotype
2011-02-02T03:13:59Z
A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell.
Adrienne
GO:0040007
OMP:0000174
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
For phenotypes affecting growth of a population, see OMP:0007167 ! population growth phenotype.
microbial_phenotype
growth
GO:0040007
A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell.
GO:0040007
OMP:WAM
nanotube phenotype
2011-06-07T02:59:54Z
A cell projection phenotype where the structure in question is a tube.
OMP:0000175
mchibucos
microbial_phenotype
A cell projection phenotype where the structure in question is a tube.
OMP:DAS
biofilm formation phenotype
2011-02-02T03:17:19Z
A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation.
Adrienne
OMP:0000176
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation.
GO:0042710
OMP:WAM
liquid culture morphology phenotype
2011-02-02T03:20:39Z
A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium.
APO:0000064
Adrienne
OMP:0000177
microbial_phenotype
A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium.
OMP:WAM
liquid culture appearance
APO:0000064
flocculation phenotype
2011-02-02T03:21:00Z
A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs.
APO:0000065
Adrienne
OMP:0000178
clumping
flocculation
microbial_phenotype
A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs.
GO:0000128
ISBN:9780763743031
OMP:WAM
flocculation
APO:0000065
colony size phenotype
2011-02-02T03:22:43Z
A colony morphology phenotype dealing with the size of the colony.
Adrienne
OMP:0000179
microbial_phenotype
A colony morphology phenotype dealing with the size of the colony.
OMP:WAM
metabolic phenotype
2011-06-06T03:59:59Z
A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances.
Metabolism
OMP:0000180
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances.
GO:0008152
colony with diffusible pigment
2011-06-07T12:18:54Z
A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony.
OMP:0000181
mchibucos
microbial_phenotype
A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony.
OMP:WAM
gas production test
2011-02-07T03:52:30Z
A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth.
Adrienne
OMP:0000182
microbial_phenotype
A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth.
OMP:JCH
anaerobic respiration with sulfate as the terminal acceptor
2011-02-07T03:52:44Z
A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor.
Adrienne
GO:0019420
OMP:0000183
dissimilatory sulfate reduction
microbial_phenotype
sulfide production
A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor.
ISBN:978-0-07-340240-6
OMP:DAS
ISBN:978-0-07-340240-6
dissimilatory sulfate reduction
dissimilatory sulfate reduction
GO:0019420
obligate anaerobe
2011-02-02T03:29:34Z
A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2).
Adrienne
OMP:0000184
microbial_phenotype
strict anaerobe
A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2).
ISBN:9780073402406
OMP:WAM
obligate aerobe
2011-02-02T03:29:51Z
A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth.
Adrienne
OMP:0000185
microbial_phenotype
strict aerobe
A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth.
ISBN:9780073402406
OMP:WAM
increased cell circularity variability
2020-07-22T22:34:00Z
OMP:0000186
microbial_phenotype
siegele
granulation phenotype
2011-06-07T02:22:14Z
A liquid culture morphology phenotype where cells group together and form small particles in the medium.
OMP:0000187
granulation in liquid
mchibucos
microbial_phenotype
precipitation in liquid culture
A liquid culture morphology phenotype where cells group together and form small particles in the medium.
ISBN:9780763743031
OMP:WAM
gram positive
2011-02-02T03:34:29Z
A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol.
Adrienne
GO:0009275
OMP:0000188
microbial_phenotype
A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol.
OMP:DAS
Gram-positive-bacterium-type cell wall
GO:0009275
gram negative
2011-02-02T03:34:45Z
A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol.
Adrienne
GO:0009276
OMP:0000189
microbial_phenotype
A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol.
OMP:DAS
Gram-negative-bacterium-type cell wall
GO:0009276
gram variable
2011-02-02T03:34:58Z
A gram stain phenotype where a cell or cells give variable results to the gram stain.
Adrienne
OMP:0000190
microbial_phenotype
A gram stain phenotype where a cell or cells give variable results to the gram stain.
OMP:DAS
gram stain phenotype
2011-02-02T03:35:15Z
A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol.
Adrienne
OMP:0000191
SNOMEDCT:385484003
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol.
ISBN:978-0-07-340240-6
ISBN:978-0077292812
OMP:DAS
Gram stain
SNOMEDCT:385484003
chemical production phenotype
2011-02-03T11:24:08Z
A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals.
Adrienne
OMP:0000192
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals.
OMP:JCH
altered cell aspect ratio
2020-07-22T22:35:03Z
An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control.
OMP:0000193
microbial_phenotype
siegele
An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control.
OMP:das
catalase positive
2011-06-06T04:28:49Z
A catalase test phenotype where an organism exhibits catalase activity.
OMP:0000194
mchibucos
microbial_phenotype
A catalase test phenotype where an organism exhibits catalase activity.
OMP:JCH
decreased catalase activity
2011-06-06T04:29:20Z
An altered catalase activity phenotype where catalase activity is decreased relative to a designated control.
OMP:0000195
mchibucos
microbial_phenotype
An altered catalase activity phenotype where catalase activity is decreased relative to a designated control.
OMP:JCH
increased catalase activity
2011-06-06T04:29:39Z
An altered catalase activity phenotype where catalase activity is increased relative to a designated control.
OMP:0000196
mchibucos
microbial_phenotype
positive regulation of catalase activity
GO:1902553
positive regulation of catalase activity
An altered catalase activity phenotype where catalase activity is increased relative to a designated control.
OMP:JCH
microbe-host interaction phenotype
2011-02-03T11:25:01Z
A microbial phenotype related to the interactions between a microbe and its host(s).
APO:0000287
Adrienne
GO:0051704
OMP:0000197
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A microbial phenotype related to the interactions between a microbe and its host(s).
OMP:WAM
multi-organism process
GO:0051704
interaction with host/environment
APO:0000287
catalase negative
2011-06-06T04:30:12Z
A catalase test phenotype where an organism doesn't exhibit catalase activity.
OMP:0000198
mchibucos
microbial_phenotype
A catalase test phenotype where an organism doesn't exhibit catalase activity.
OMP:JCH
acid-fast staining phenotype
2011-02-03T11:38:46Z
A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin.
Adrienne
OMP:0000199
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin.
ISBN:978-0-07-729281-1
OMP:DAS
colony with non-diffusible pigment
2011-06-07T12:19:32Z
A colony pigmentation phenotype characterized by pigmentation only in the colony.
OMP:0000200
mchibucos
microbial_phenotype
A colony pigmentation phenotype characterized by pigmentation only in the colony.
OMP:WAM
nanotube mediated communication
2011-03-02T01:41:52Z
A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube.
Adrienne
OMP:0000201
microbial_phenotype
nanotubule mediated communication
A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube.
OMP:WAM
PMID:21335240
outer membrane vesicles phenotype
2011-03-02T01:43:12Z
A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles.
Adrienne
OMP:0000202
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles.
OMP:JCH
PMID:20825345
capsule phenotype
2011-06-07T09:44:51Z
A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope.
APO:0000331
OMP:0000203
glycocalyx
mchibucos
microbial_phenotype
slime layer
capsule formation
APO:0000331
A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope.
ISBN:9780073402406
OMP:DAS
presence of capsule
2011-06-07T09:45:20Z
A capsule phenotype where a cell or cells have a capsule.
OMP:0000204
When present, the capsule layer lies outside the cell wall and/or outer membrane.
glycocalyx
mchibucos
microbial_phenotype
slime layer
A capsule phenotype where a cell or cells have a capsule.
OMP:DAS
OMP:DAS
glycocalyx
OMP:DAS
slime layer
forms single species biofilm
2011-06-07T02:26:30Z
A biofilm phenotype where the biofilm is formed by a single species.
OMP:0000205
mchibucos
microbial_phenotype
A biofilm phenotype where the biofilm is formed by a single species.
OMP:WAM
altered hemolysis test result
2011-06-07T03:17:46Z
A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control.
OMP:0000206
mchibucos
microbial_phenotype
A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control.
OMP:WAM
serotype phenotype
2011-03-02T02:16:33Z
A microbial phenotype that is distinguished by the presence a specific surface antigen.
Adrienne
OMP:0000207
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
antigenic typing phenotype
microbial_phenotype
serological test phenotype
serovar
A microbial phenotype that is distinguished by the presence a specific surface antigen.
OMP:MCC
absence of hemolysis
2011-06-07T03:18:33Z
A hemolysis test phenotype where a cell or cells does not cause hemolysis.
OMP:0000208
mchibucos
microbial_phenotype
A hemolysis test phenotype where a cell or cells does not cause hemolysis.
OMP:WAM
fluorescent colony
2011-06-07T12:20:31Z
A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence.
OMP:0000209
mchibucos
microbial_phenotype
A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence.
OMP:WAM
colony surface phenotype
2011-06-07T12:31:24Z
A colony morphology phenotype that describes the appearance of the surface of a colony or colonies.
OMP:0000210
mchibucos
microbial_phenotype
A colony morphology phenotype that describes the appearance of the surface of a colony or colonies.
OMP:WAM
absence of capsule
2011-06-07T09:49:20Z
A capsule phenotype where a cell or cells lack capsule.
OMP:0000211
mchibucos
microbial_phenotype
A capsule phenotype where a cell or cells lack capsule.
OMP:DAS
smooth colony surface
2011-06-07T12:32:12Z
A colony surface phenotype where colonies have a shiny glistening surface.
OMP:0000212
SNOMEDCT:90926009
mchibucos
microbial_phenotype
A colony surface phenotype where colonies have a shiny glistening surface.
ISBN:1555810489
OMP:WAM
Bacterial colony surface, smooth
SNOMEDCT:90926009
increased number of flagella
2011-06-07T09:53:17Z
An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control.
OMP:0000213
mchibucos
microbial_phenotype
An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control.
OMP:DAS
cell staining phenotype
2011-02-03T01:33:37Z
A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification.
APO:0000061
Adrienne
OMP:0000214
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
colony color
APO:0000061
A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification.
OMP:DAS
decreased number of flagella
2011-06-07T09:54:51Z
An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control.
OMP:0000215
mchibucos
microbial_phenotype
An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control.
OMP:DAS
aerobic respiration phenotype
2011-02-07T03:53:18Z
A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor.
Adrienne
OMP:0000216
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor.
ISBN:978-0-07-340240-6
OMP:DAS
increased hemolysis
2011-06-07T03:19:00Z
An altered hemolysis phenotype where hemolysis is increased relative to a designated control.
OMP:0000217
mchibucos
microbial_phenotype
An altered hemolysis phenotype where hemolysis is increased relative to a designated control.
OMP:WAM
catalase test phenotype
2011-02-03T04:43:28Z
A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water.
Adrienne
GO:0004096
OMP:0000218
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O [EC:1.11.1.6].
microbial_phenotype
A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water.
ISBN:9780895828309
OMP:JCH
catalase activity
GO:0004096
decarboxylase test phenotype
2011-02-03T04:43:53Z
A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine.
Adrienne
OMP:0000219
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine.
ISBN:9780895828309
OMP:JCH
oxidase test phenotype
2011-02-03T04:44:11Z
A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products.
Adrienne
OMP:0000220
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products.
ISBN:9780895828309
OMP:JCH
enzymatic activity phenotype
2011-02-03T04:44:39Z
A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes.
Adrienne
FYPO:0000654
GO:0003824
OMP:0000221
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
catalytic activity
microbial_phenotype
catalytic activity
GO:0003824
catalytic activity phenotype
FYPO:0000654
A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes.
ISBN:0198506732
OMP:JCH
urease test phenotype
2011-02-03T04:45:37Z
A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide.
Adrienne
GO:0009039
OMP:0000222
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
urease activity
GO:0009039
A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide.
ISBN:9780895828309
OMP:JCH
decreased cell aspect ratio
2020-07-22T22:36:00Z
An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control.
OMP:0000223
microbial_phenotype
siegele
An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control.
OMP:das
energy metabolism phenotype
2011-06-06T04:53:09Z
A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers.
OMP:0000224
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
bioenergetics
mchibucos
microbial_phenotype
A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers.
OMP:JCH
carbon dioxide production
2011-02-07T03:53:37Z
A chemical production phenotype where carbon dioxide is produced.
Adrienne
OMP:0000225
microbial_phenotype
A chemical production phenotype where carbon dioxide is produced.
OMP:JCH
increased cell aspect ratio
2020-07-22T22:36:00Z
An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control.
OMP:0000226
microbial_phenotype
siegele
An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control.
OMP:das
altered cell aspect ratio variability
2020-07-22T22:37:16Z
OMP:0000227
microbial_phenotype
siegele
rough colony surface
2011-06-07T12:32:41Z
A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface.
OMP:0000228
SNOMEDCT:77092005
mchibucos
microbial_phenotype
Bacterial colony surface, rough
SNOMEDCT:77092005
A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface.
ISBN:1555810489
OMP:WAM
colony consistency phenotype
2011-06-07T12:34:58Z
A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle.
OMP:0000229
colony texture
mchibucos
microbial_phenotype
A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle.
ISBN:1555810489
OMP:WAM
rugose colony surface
2011-06-07T12:35:30Z
A colony surface phenotype that is characterized by a surface that is wrinkled.
OMP:0000230
mchibucos
microbial_phenotype
wrinkled colony surface
A colony surface phenotype that is characterized by a surface that is wrinkled.
OMP:JCH
growth into medium
2011-06-07T12:38:26Z
A colony elevation phenotype characterized by growth into the medium not above it.
OMP:0000231
mchibucos
microbial_phenotype
A colony elevation phenotype characterized by growth into the medium not above it.
OMP:WAM
iridescent colony
2011-06-07T12:39:13Z
A colony opacity phenotype characterized by varying colors being observed in reflected light.
OMP:0000232
mchibucos
microbial_phenotype
A colony opacity phenotype characterized by varying colors being observed in reflected light.
OMP:WAM
decreased cell aspect ratio variability
2020-07-22T22:38:22Z
OMP:0000233
microbial_phenotype
siegele
butyrous colony consistency
2011-06-07T12:41:24Z
A colony consistency phenotype where a colony or colonies have a butter-like consistency.
OMP:0000234
SNOMEDCT:25778006
buttery colony consistency
mchibucos
microbial_phenotype
Bacterial colony consistency, butyrous
SNOMEDCT:25778006
A colony consistency phenotype where a colony or colonies have a butter-like consistency.
ISBN:1555810489
OMP:WAM
increased cell aspect ratio variability
2020-07-22T22:38:22Z
OMP:0000235
microbial_phenotype
siegele
dry colony consistency
2011-06-07T12:42:40Z
A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency.
OMP:0000236
SNOMEDCT:87916001
friable colony
mchibucos
microbial_phenotype
Bacterial colony consistency, friable
SNOMEDCT:87916001
A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency.
ISBN:1555810489
OMP:WAM
colony odor phenotype
2011-06-07T12:45:12Z
A morphology phenotype dealing with the smell a colony produces.
OMP:0000237
mchibucos
microbial_phenotype
A morphology phenotype dealing with the smell a colony produces.
OMP:WAM
crateriform colony elevation
2011-06-07T01:11:04Z
A colony elevation phenotype characterized by crater like growth.
OMP:0000238
mchibucos
microbial_phenotype
A colony elevation phenotype characterized by crater like growth.
OMP:WAM
plicate colony surface
2011-06-07T01:11:50Z
A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated.
OMP:0000239
mchibucos
microbial_phenotype
A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated.
OMP:JCH
punctiform colony
2011-06-07T01:50:03Z
A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm.
OMP:0000240
SNOMEDCT:55699002
mchibucos
microbial_phenotype
A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm.
OMP:WAM
decreased colony size
2011-06-07T01:55:22Z
A colony size phenotype where colony size is decreased relative to a designated control.
OMP:0000241
mchibucos
microbial_phenotype
A colony size phenotype where colony size is decreased relative to a designated control.
OMP:JCH
concentrically ringed surface colony
2011-06-07T01:58:00Z
A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis.
OMP:0000242
concentric colony surface texture
mchibucos
microbial_phenotype
A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis.
OMP:JCH
sectored colony
2011-06-07T02:04:20Z
A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate.
OMP:0000243
mchibucos
microbial_phenotype
A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate.
OMP:WAM
papillated colony
2011-06-07T02:06:19Z
A colony form phenotype characterized by growth of small, round or cone-shaped protuberances.
OMP:0000244
colony papillation
mchibucos
microbial_phenotype
A colony form phenotype characterized by growth of small, round or cone-shaped protuberances.
OMP:JCH
participates in multi-species biofilm
2011-06-07T02:27:00Z
A biofilm phenotype where the formation involves two or more species.
OMP:0000245
mchibucos
microbial_phenotype
A biofilm phenotype where the formation involves two or more species.
OMP:WAM
presence of nanotubes
2011-06-07T03:00:25Z
A nanotube phenotype where a cell or cells have the ability to produce nanotubes.
OMP:0000246
mchibucos
microbial_phenotype
A nanotube phenotype where a cell or cells have the ability to produce nanotubes.
OMP:JCH
absence of nanotubes
2011-06-07T03:01:32Z
A nanotube phenotype where a cell or cells lack the ability to produce nanotubes.
OMP:0000247
mchibucos
microbial_phenotype
A nanotube phenotype where a cell or cells lack the ability to produce nanotubes.
OMP:JCH
biofilm architecture phenotype
2011-06-07T03:05:56Z
A biofilm phenotype dealing with the structural formation of the biofilm.
OMP:0000248
mchibucos
microbial_phenotype
A biofilm phenotype dealing with the structural formation of the biofilm.
OMP:WAM
decreased hemolysis
2011-06-07T03:19:25Z
An altered hemolysis phenotype where hemolysis is decreased relative to a designated control.
OMP:0000249
mchibucos
microbial_phenotype
An altered hemolysis phenotype where hemolysis is decreased relative to a designated control.
OMP:WAM
altered cell division
2020-07-22T22:55:26Z
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control.
OMP:0000250
abnormal cell division
microbial_phenotype
siegele
FYPO:0000186
abnormal cell division
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control.
OMP:das
altered cell division ratio variability
2020-07-22T22:58:18Z
OMP:0000251
microbial_phenotype
siegele
metabolite accumulation
2011-07-21T12:51:15Z
A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism.
OMP:0000252
mchibucos
microbial_phenotype
A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism.
OMP:JCH
gene expression phenotype
2011-07-21T01:03:06Z
A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation.
FYPO:0000142
GO:0010467
OMP:0000253
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
gene expression phenotype
FYPO:0000142
A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation.
ISBN:9781615835409
OMP:WAM
gene expression
GO:0010467
constitutive transcription
2011-07-21T01:05:42Z
An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively.
OMP:0000254
constitutive gene expression
mchibucos
microbial_phenotype
An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively.
OMP:WAM
plating morphology phenotype
2011-07-21T01:34:48Z
A growth phenotype related to the morphology of colonies on solid medium.
OMP:0000255
This term was made obsolete because it is redundant with OMP:0000100 ! colony morphology phenotype.
mchibucos
microbial_phenotype
true
A growth phenotype related to the morphology of colonies on solid medium.
OMP:WAM
MacConkey agar phenotype
2011-07-21T01:35:25Z
A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium.
** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself.
OMP:0000256
This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself.
mchibucos
microbial_phenotype
true
A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium.
** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself.
OMP:AZ
decreased cell division ratio variability
2020-07-22T23:00:48Z
OMP:0000257
microbial_phenotype
siegele
red colony on MacConkey agar
2011-07-21T01:38:10Z
A colony morphology phenotype where cells form a red colony on MacConkey agar medium.
OMP:0000258
This term was made obsolete because 'red colony on MacConkey agar' was determined to be evidence for a phenotype, i.e. utilization of a particular sugar, rather than the phenotype itself.
mchibucos
microbial_phenotype
true
A colony morphology phenotype where cells form a red colony on MacConkey agar medium.
OMP:AZ
increased cell division ratio variability
2020-07-22T23:00:48Z
OMP:0000259
microbial_phenotype
siegele
altered nucleoid area
2020-07-22T23:02:57Z
OMP:0000260
microbial_phenotype
siegele
decreased nucleoid area
2020-07-22T23:04:02Z
OMP:0000261
microbial_phenotype
siegele
increased nucleoid area
2020-07-22T23:04:02Z
OMP:0000262
microbial_phenotype
siegele
altered nucleoid area variability
2020-07-22T23:05:16Z
OMP:0000263
microbial_phenotype
siegele
decreased nucleoid area variability
2020-07-22T23:06:26Z
OMP:0000264
microbial_phenotype
siegele
increased nucleoid area variability
2020-07-22T23:06:26Z
OMP:0000265
microbial_phenotype
siegele
altered cell population growth rate
2020-07-22T23:15:57Z
OMP:0000266
microbial_phenotype
siegele
increased gene expression
2011-07-21T02:01:35Z
An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control.
OMP:0000267
mchibucos
microbial_phenotype
An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control.
OMP:WAM
decreased gene expression
2011-07-21T02:02:26Z
An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control.
OMP:0000268
mchibucos
microbial_phenotype
An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control.
OMP:WAM
protein activity phenotype
2011-07-21T02:05:51Z
A microbial phenotype related to the enzymatic or other activity of a protein.
OMP:0000269
This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.
During OMP call on 2016-01-27 we decided to delete the term OMP:0000269 ! protein activity phenotype because when observing a phenotype we don't know what kind of molecule is doing something, just that a particular activity is absent, present, or altered.
mchibucos
microbial_phenotype
true
A microbial phenotype related to the enzymatic or other activity of a protein.
APO:0000022
OMP:WAM
decreased cell population growth rate
2020-07-22T23:16:35Z
OMP:0000270
microbial_phenotype
siegele
increased cell population growth rate
2020-07-22T23:16:35Z
OMP:0000271
microbial_phenotype
siegele
cell morphology variability
2020-07-23T10:45:45Z
OMP:0000272
microbial_phenotype
siegele
altered cell perimeter length
2020-07-23T11:13:40Z
OMP:0000273
microbial_phenotype
siegele
antimicrobial agent resistance phenotype
2011-07-21T02:21:21Z
A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe.
CHEBI:33281
OMP:0000274
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
antibiotic resistance phenotype
antibiotic sensitivity phenotype
antifungal resistance phenotype
antimetabolite resistance phenotype
antimicrobial compound sensitivity phenotype
antiviral resistance phenotype
mchibucos
microbial_phenotype
A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe.
CHEBI:33281
OMP:MCC
antimicrobial agent
CHEBI:33281
decreased cell perimeter
2020-07-23T11:14:11Z
OMP:0000275
microbial_phenotype
siegele
increased cell perimeter
2020-07-23T11:14:11Z
OMP:0000276
microbial_phenotype
siegele
altered cell perimeter length variability
2020-07-23T11:14:34Z
OMP:0000277
microbial_phenotype
siegele
decreased cell perimeter length variability
2020-07-23T11:15:25Z
OMP:0000278
microbial_phenotype
siegele
increased cell perimeter length variability
2020-07-23T11:15:25Z
OMP:0000279
microbial_phenotype
siegele
increased cell length
2011-07-21T02:37:15Z
An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control.
FYPO:0000017
OMP:0000280
The mukB mutant appear to have elongated cell length. This is different from cell filamentation. PMID:1989883.
mchibucos
microbial_phenotype
An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control.
OMP:DAS
elongated cell
FYPO:0000017
altered cell population phenotype
2020-07-23T11:38:45Z
OMP:0000281
microbial_phenotype
siegele
decreased population growth rate
2011-07-21T02:43:01Z
An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control.
OMP:0000282
decreased growth rate
increased doubling time
increased generation time
mchibucos
microbial_phenotype
An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control.
OMP:DAS
increased population growth rate
2011-07-21T02:43:22Z
An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control.
OMP:0000283
decreased doubling time
decreased generation time
increased growth rate
mchibucos
microbial_phenotype
An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control.
OMP:DAS
altered cell population growth yield
2020-07-23T12:28:35Z
OMP:0000284
microbial_phenotype
siegele
decreased cell population growth yield
2020-07-23T12:29:32Z
OMP:0000285
microbial_phenotype
siegele
increased cell population growth yield
2020-07-23T12:29:32Z
OMP:0000286
microbial_phenotype
siegele
altered fraction of non-constricted cells
2020-07-23T12:46:03Z
OMP:0000287
microbial_phenotype
population growth phenotype
siegele
decreased fraction of non-constricted cells
2020-07-23T12:47:02Z
OMP:0000288
microbial_phenotype
siegele
increased number of anucleoid cells
2011-07-21T04:07:44Z
An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control.
In Escherichia coli mutations in the muk or par genes result in an increased number of anucleoid cells.
OMP:0000289
mchibucos
microbial_phenotype
An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control.
OMP:DAS
genetic material phenotype
2011-07-21T04:24:02Z
A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information.
OMP:0000290
RNA
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
double stranded DNA
mchibucos
microbial_phenotype
single stranded DNA
ISBN:9780198529170
double stranded DNA
ISBN:9780198529170
RNA
ISBN:9780198529170
single stranded DNA
A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information.
ISBN:9780198529170
OMP:WAM
genophore phenotype
2011-07-21T04:25:09Z
A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes.
OMP:0000291
This term was obsoleted because it is rarely used. Instead, genophore phenotype is listed as a synonym of nucleoid phenotype.
mchibucos
microbial_phenotype
true
A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes.
ISBN:9780195307610
ISBN:9781613441138
OMP:DAS
increased fraction of non-constricted cells
2020-07-23T12:47:02Z
OMP:0000292
microbial_phenotype
siegele
altered fraction of cells with one nucleoid
2020-07-23T12:50:06Z
OMP:0000293
microbial_phenotype
siegele
DNA supercoiling phenotype
2011-07-21T04:46:29Z
A genetic material phenotype related to supercoiling of a double-stranded DNA molecule.
OMP:0000294
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A genetic material phenotype related to supercoiling of a double-stranded DNA molecule.
OMP:DAS
presence of negative supercoiling
2011-07-21T04:47:38Z
A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix.
OMP:0000295
mchibucos
microbial_phenotype
underwound DNA
A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix.
ISBN:9781613441138
presence of positive supercoiling
2011-07-21T04:48:22Z
A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix.
OMP:0000296
mchibucos
microbial_phenotype
overwound DNA
A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix.
ISBN:9781613441138
decreased fraction of cells with one nucleoid
2020-07-23T12:50:57Z
OMP:0000297
microbial_phenotype
siegele
increased fraction of cells with one nucleoid
2020-07-23T12:50:57Z
OMP:0000298
microbial_phenotype
siegele
galactose-1-phosphate uridyl transferase activity
2011-07-21T05:12:43Z
An enzymatic activity phenotype where galactose-1-phosphate uridyl transferase activity is present.
OMP:0000299
This term was obsoleted in response to the decision to not have terms for individual enzyme activities unless those activities are commonly used for identification or classification.
mchibucos
microbial_phenotype
true
altered fraction of cells with two nucleoids
2020-07-23T12:52:56Z
OMP:0000300
microbial_phenotype
siegele
decreased fraction of cells with two nucleoids
2020-07-23T12:53:45Z
OMP:0000301
microbial_phenotype
siegele
increased fraction of cells with two nucleoids
2020-07-23T12:53:45Z
OMP:0000302
microbial_phenotype
siegele
altered correlation between nucleoid and cell constriction during cell division
2020-07-23T14:15:02Z
OMP:0000303
microbial_phenotype
siegele
increased substrate binding
2011-07-21T05:18:58Z
A substrate binding phenotype where a protein has increased affinity for a substrate.
OMP:0000304
This term was obsoleted in response to the decision that Kd measurements are too granular a phenotype for OMP, at least at this time. The issue can be reconsidered if a need for such terms arises in the future.
mchibucos
microbial_phenotype
true
decreased correlation between nucleoid and cell constriction during cell division
2020-07-23T14:16:06Z
OMP:0000305
microbial_phenotype
siegele
macromolecular biosynthesis phenotype
2011-07-21T05:44:45Z
A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
OMP:0000306
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0009059
OMP:WAM
DNA replication phenotype
2011-07-21T05:45:47Z
A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle.
GO:0044786
OMP:0000307
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
cell cycle DNA replication
GO:0044786
A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle.
OMP:WAM
over-initiation of DNA replication
2011-07-21T05:46:05Z
A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control.
OMP:0000308
mchibucos
microbial_phenotype
A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control.
OMP:WAM
biosynthetic phenotype
2011-07-21T05:47:06Z
A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Biosynthesis
OMP:0000309
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0009058
small molecule biosynthesis phenotype
2011-07-21T05:49:51Z
A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule.
OMP:0000310
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule.
OMP:JCH
amino acid biosynthesis phenotype
2011-07-21T05:50:25Z
A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur.
OMP:0000311
mchibucos
microbial_phenotype
A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur.
OMP:JCH
locomotion phenotype
2012-04-05T11:43:53Z
A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
GO:0040011
OMP:0000312
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
locomotion
GO:0040011
A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
GO:0040011
OMP:MCC
increased correlation between nucleoid and cell constriction during cell division
2020-07-23T14:16:06Z
OMP:0000313
microbial_phenotype
siegele
altered degree of nucleoid constriction at the onset of cell constriction
2020-07-23T14:18:50Z
OMP:0000314
This is a population average.
microbial_phenotype
siegele
decreased degree of nucleoid constriction at the onset of cell constriction
2020-07-23T14:19:22Z
OMP:0000315
microbial_phenotype
siegele
increased degree of nucleoid constriction at the onset of cell constriction
2020-07-23T14:19:22Z
OMP:0000316
microbial_phenotype
siegele
cell diameter phenotype
2020-11-18T10:05:19Z
OMP:0000317
microbial_phenotype
siegele
presence of cell length variability
2020-07-26T17:23:35Z
OMP:0000318
microbial_phenotype
siegele
cell area phenotype
2020-11-26T13:14:47Z
OMP:0000319
microbial_phenotype
siegele
presence of cell diameter variability
2020-07-26T17:25:52Z
OMP:0000320
microbial_phenotype
siegele
macrolide resistance phenotype
2012-11-02T01:51:04Z
An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties.
CHEBI:25105
FK506
OMP:0000321
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
amphotericin B resistance phenotype
azithromycin resistance phenotype
bafilomycin A1 resistance phenotype
brasilinolide A resistance phenotype
brefeldin A resistance phenotype
carvomycin A resistance phenotype
clarithromycin resistance phenotype
dirithromycin resistance phenotype
erythromycin resistance phenotype
josamycin resistance phenotype
latrunculin B resistance phenotype
macrolide sensitivity phenotype
mchibucos
microbial_phenotype
polyketide resistance phenotype
rapamycin resistance phenotype
roxithromycin resistance phenotype
spiramycin resistance phenotype
telithromycin resistance phenotype
troleandomycin resistance phenotype
CHEBI:2682
amphotericin B resistance phenotype
CHEBI:22689
bafilomycin A1 resistance phenotype
CHEBI:49703
latrunculin B resistance phenotype
macrolide antibiotic
CHEBI:25105
CHEBI:31739
josamycin resistance phenotype
CHEBI:474014
dirithromycin resistance phenotype
An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties.
CHEBI:25106
OMP:MCC
CHEBI:65514
brasilinolide A resistance phenotype
CHEBI:26188
polyketide resistance phenotype
CHEBI:48844
roxithromycin resistance phenotype
CHEBI:48080
brefeldin A resistance phenotype
CHEBI:2955
azithromycin resistance phenotype
CHEBI:9168
rapamycin resistance phenotype
CHEBi:3732
clarithromycin resistance phenotype
CHEBI:25105
erythromycin resistance phenotype
cell length phenotype
2020-11-26T13:14:47Z
OMP:0000322
microbial_phenotype
siegele
presence of cell area variability
2020-07-26T17:35:24Z
OMP:0000323
microbial_phenotype
siegele
cell perimeter length phenotype
2020-11-26T13:14:47Z
OMP:0000324
microbial_phenotype
siegele
presence of cell volume variability
2020-07-26T17:44:34Z
OMP:0000325
microbial_phenotype
siegele
cell surface area phenotype
2020-11-26T13:14:47Z
OMP:0000326
microbial_phenotype
siegele
presence of cell surface area variability
2020-07-26T17:50:29Z
OMP:0000327
microbial_phenotype
siegele
cell volume phenotype
2020-11-26T13:14:47Z
OMP:0000328
microbial_phenotype
siegele
presence of cell perimeter length variability
2020-07-26T19:07:06Z
OMP:0000329
microbial_phenotype
siegele
cell surface area-to-volume ratio phenotype
2020-11-26T13:14:47Z
OMP:0000330
microbial_phenotype
siegele
aminopyrimidine resistance phenotype
2012-11-02T02:02:58Z
5-flucytosine resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds.
OMP:0000331
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
aminopyrimidine sensitivity phenotype
antifolate resistance phenotype
diaveridine resistance phenotype
iclaprim resistance phenotype
mchibucos
microbial_phenotype
piritrexim resistance phenotype
pyrimethamine resistance phenotype
trimethoprim resistance phenotype
trimetrexate resistance phenotype
5-flucytosine resistance phenotype
CHEBI:5100
CID:5583
trimetrexate resistance phenotype
CHEBI:45924
trimethoprim resistance phenotype
CHEBI:73913
antifolate resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds.
CHEBI:38338
OMP:DAS
CHEBI:8673
pyrimethamine resistance phenotype
CHEBI:131724
iclaprim resistance phenotype
CHEBI:123115
diaveridine resistance phenotype
presence of cell surface area-to-volume ratio variability
2020-07-26T19:11:25Z
OMP:0000332
microbial_phenotype
siegele
cell circularity phenotype
2020-11-27T16:31:01Z
4 pi area/(perimeter)^2 or 2 pi area/(perimeter)^2? defined differently in two places in paper
OMP:0000333
microbial_phenotype
siegele
increased resistance to aminopyrimidine
2012-11-02T02:04:38Z
An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control.
OMP:0000334
decreased sensitivity to antifolates
mchibucos
microbial_phenotype
An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control.
OMP:DAS
decreased resistance to aminopyrimidine
2012-11-02T02:04:58Z
An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control.
OMP:0000335
increased sensitivity to aminopyrimidine
mchibucos
microbial_phenotype
An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control.
OMP:DAS
beta-lactam resistance phenotype
2012-11-02T02:06:13Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure.
CHEBI:27933
OMP:0000336
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
amoxicillin resistance phenotype
ampicillin resistance phenotype
aztreonam resistance phenotype
beta-lactam sensitivity phenotype
carbapenams resistance phenotype
carbenicillin resistance phenotype
cefaclor resistance phenotype
cefoxitin resistance phenotype
cefsulodin resistance phenotype
ceftazidime resistance phenotype
cephalosporins resistance phenotype
cephaloxporin resistance phenotype
cephamycin resistance phenotype
mchibucos
mecillinam resistance phenotype
microbial_phenotype
monobactams resistance phenotype
oxacillin resistance phenotype
penicillin resistance phenotype
CHEBI:3393
carbenicillin resistance phenotype
CHEBI:161680
aztreonam resistance phenotype
CHEBI:51208
mecillinam resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure.
CHEBI:35627
OMP:MCC
CHEBI:209807
cefoxitin resistance phenotype
CHEBI:2676
amoxicillin resistance phenotype
CHEBI:50695
monobactams resistance phenotype
CHEBI:3507
cefsulodin resistance phenotype
CHEBI:55429
cephamycin resistance phenotype
CHEBI:51356
penicillin resistance phenotype
CHEBI:64510
carbapenams resistance phenotype
CHEBI:7809
oxacillin resistance phenotype
CHEBI:28971
ampicillin resistance phenotype
CHEBI:3508
ceftazidime resistance phenotype
CHEBI:3478
cefaclor resistance phenotype
beta-lactam antibiotic
CHEBI:27933
presence of cell circularity variability
2020-07-26T19:23:30Z
OMP:0000337
microbial_phenotype
siegele
cell aspect ratio phenotype
2020-11-27T19:14:47Z
OMP:0000338
cell aspect ratio (diameter/length)
microbial_phenotype
siegele
presence of cell aspect ratio variability
2020-07-26T19:54:28Z
OMP:0000339
microbial_phenotype
siegele
presence of cell division ratio variability
2020-07-26T19:58:18Z
OMP:0000340
microbial_phenotype
siegele
cell shape variability phenotype
2020-11-27T19:18:22Z
A cell population phenotype where the trait is variability in cell shape within a microbial cell population.
OMP:0000341
microbial_phenotype
siegele
A cell population phenotype where the trait is variability in cell shape within a microbial cell population.
OMP:das
presence of nucleoid area variability
2020-07-27T16:05:18Z
OMP:0000342
microbial_phenotype
siegele
altered cell shape variability phenotype
2020-11-27T19:21:14Z
A cell population phenotype where variability in cell shape is altered relative to a designated control.
OMP:0000343
microbial_phenotype
siegele
A cell population phenotype where variability in cell shape is altered relative to a designated control.
OMP:das
nucleoid area phenotype
2020-11-27T19:47:09Z
OMP:0000344
microbial_phenotype
siegele
cell population growth yield phenotype
2020-11-27T20:14:46Z
OMP:0000345
microbial_phenotype
siegele
nucleoid constriction during cell division phenotype
2020-11-29T12:13:41Z
OMP:0000346
microbial_phenotype
siegele
altered nucleoid constriction during cell division
2020-11-29T12:22:10Z
OMP:0000347
This is a cell population average.
microbial_phenotype
siegele
correlation between nucleoid and cell constriction phenotype
2020-11-29T12:40:18Z
OMP:0000348
microbial_phenotype
siegele
cell division during cell population growth phenotype
2020-11-29T13:03:32Z
OMP:0000349
microbial_phenotype
siegele
altered cell division during cell population growth
2020-11-29T13:09:01Z
OMP:0000350
microbial_phenotype
population growth phenotype
siegele
altered nucleoid number phenotype
2020-11-29T13:20:35Z
OMP:0000351
microbial_phenotype
siegele
timing of cell constriction phenotype
2020-11-29T13:54:26Z
OMP:0000352
microbial_phenotype
siegele
timing of nucleoid separation phenotype
2020-11-29T13:55:15Z
OMP:0000353
microbial_phenotype
siegele
altered timing of cell constriction
2020-11-29T14:02:10Z
OMP:0000354
microbial_phenotype
siegele
altered timing of nucleoid separation
2020-11-29T14:03:05Z
OMP:0000355
microbial_phenotype
siegele
decreased relative timing of cell constriction
2020-11-29T14:13:36Z
OMP:0000356
microbial_phenotype
siegele
increased relative timing of cell constriction
2020-11-29T14:13:36Z
OMP:0000357
microbial_phenotype
siegele
cell length variability phenotype
2020-11-29T14:19:27Z
OMP:0000358
microbial_phenotype
siegele
cell diameter variability phenotype
2020-11-29T14:20:53Z
OMP:0000359
microbial_phenotype
siegele
cell area variability phenotype
2020-11-29T14:21:45Z
OMP:0000360
microbial_phenotype
siegele
cell volume variability phenotype
2020-11-29T14:22:39Z
OMP:0000361
microbial_phenotype
siegele
cell surface area variability phenotype
2020-11-29T14:24:11Z
OMP:0000362
microbial_phenotype
siegele
cell perimeter length variability phenotype
2020-11-29T14:24:52Z
OMP:0000363
microbial_phenotype
siegele
cell surface area-to-volume ratio variability phenotype
2020-11-29T14:25:30Z
OMP:0000364
microbial_phenotype
siegele
cell circularity variability phenotype
2020-11-29T14:26:57Z
OMP:0000365
microbial_phenotype
siegele
cell aspect ratio variability phenotype
2020-11-29T14:27:30Z
OMP:0000366
microbial_phenotype
siegele
nucleoid area variability phenotype
2020-11-29T14:30:57Z
OMP:0000367
microbial_phenotype
siegele
cell division ratio variability phenotype
2020-11-29T14:33:05Z
OMP:0000368
microbial_phenotype
siegele
internalization by macrophage phenotype
2020-12-01T21:00:29Z
OMP:0000369
microbial_phenotype
siegele
presence of internalization by macrophage
2020-12-01T21:06:40Z
OMP:0000370
microbial_phenotype
siegele
absence of internalization by macrophage
2020-12-01T21:06:40Z
OMP:0000371
microbial_phenotype
siegele
altered internalization by macrophage
2020-12-01T21:06:40Z
OMP:0000372
microbial_phenotype
siegele
increased internalization by macrophage
2020-12-01T21:06:40Z
OMP:0000373
microbial_phenotype
siegele
decreased internalization by macrophage
2020-12-01T21:06:40Z
OMP:0000374
microbial_phenotype
siegele
abolished internalization by macrophage
2020-12-01T21:06:40Z
OMP:0000375
microbial_phenotype
siegele
acid tolerance response phenotype
2020-12-27T00:51:04Z
A response to stress phenotype related to how exposure of a microbial cell or cells to a small decrease in pH affects
OMP:0000376
microbial_phenotype
siegele
absence of acid tolerance response
2020-12-27T00:52:03Z
OMP:0000377
microbial_phenotype
siegele
altered acid tolerance response
2020-12-27T00:52:03Z
OMP:0000378
microbial_phenotype
siegele
presence of acid tolerance response
2020-12-27T00:52:03Z
OMP:0000379
microbial_phenotype
siegele
decreased acid tolerance response
2020-12-27T00:53:04Z
OMP:0000380
microbial_phenotype
siegele
increased acid tolerance response
2020-12-27T00:53:04Z
OMP:0000381
microbial_phenotype
siegele
abolished acid tolerance response
2020-12-27T00:53:11Z
OMP:0000382
microbial_phenotype
siegele
cell-cell self recognition phenotype
2021-03-29T16:47:35Z
<new synonym>
A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to
discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self.
OMP:0000383
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to
discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self.
OMP:das
PMID:18621670
absence of cell-cell self recognition
2021-03-29T16:49:55Z
OMP:0000384
microbial_phenotype
siegele
presence of cell-cell self recognition
2021-03-29T16:49:55Z
A cell-cell self-recognition phenotype where cells of a microbial strain recognizes self and different populations of the same strain will merge when grown on solid medium.
OMP:0000385
microbial_phenotype
siegele
altered cell-cell self recognition
2021-03-29T16:49:55Z
OMP:0000386
aberrant cell-cell self recognition
microbial_phenotype
siegele
DDPHENO:0000122
aberrant cell-cell self recognition
increased cell-cell self recognition
2021-03-29T16:52:06Z
OMP:0000387
microbial_phenotype
siegele
decreased cell-cell self recognition
2021-03-29T16:52:06Z
OMP:0000388
microbial_phenotype
siegele
abolished cell-cell self recognition
2021-03-29T16:52:06Z
OMP:0000389
microbial_phenotype
siegele
presence of transcription of gene or operon
2021-04-13T14:45:21Z
OMP:0000390
microbial_phenotype
siegele
absence of transcription of gene or operon
2021-04-13T14:46:06Z
OMP:0000391
microbial_phenotype
siegele
resistant to aminopyrimidine
2012-11-04T02:52:01Z
An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds.
OMP:0000435
mchibucos
microbial_phenotype
An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds.
OMP:DAS
not resistant to aminopyrimidine
2012-11-04T02:52:18Z
An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds.
OMP:0000436
mchibucos
microbial_phenotype
sensitivity to aminopyrimidine
An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds.
OMP:DAS
resistant to ampicillin
2012-11-04T02:52:48Z
An antimicrobial compound resistance phenotype where a cell or cells are resistant to ampicillin.
OMP:0000437
OMP:0006047
This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, when possible, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into the annotation extension column. In cases where a natural grouping doesn't exist, the user should use "OMP:0007876 resistant to an antimicrobial agent" and put the CHEBI ID (or other identifier) into the annotation extension column.
mchibucos
microbial_phenotype
true
resistant to penicillin
2012-11-04T02:55:41Z
An antimicrobial compound resistance phenotype where a cell or cells are resistant to penicillin.
OMP:0000445
OMP:0006047
This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into column 16.
mchibucos
microbial_phenotype
true
trace element utilization phenotype
2013-05-23T01:35:26Z
A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts.
OMP:0000450
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
mchibucos
microbial_phenotype
micronutrient utilization
A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts.
OMP:JCH
heme utilization phenotype
2013-05-23T01:37:06Z
An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring.
OMP:0000451
haem
mchibucos
microbial_phenotype
An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring.
OMP:JCH
increased heme utilization
2013-05-23T01:37:51Z
An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control.
OMP:0000452
mchibucos
microbial_phenotype
An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control.
OMP:JCH
decreased heme utilization
2013-05-23T01:39:39Z
An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control.
OMP:0000453
mchibucos
microbial_phenotype
An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control.
OMP:JCH
absence of heme utilization
2013-05-23T01:40:40Z
A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron.
OMP:0000454
mchibucos
microbial_phenotype
A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron.
OMP:JCH
alkaloid chemical resistance phenotype
2013-05-23T01:53:57Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure.
OMP:0000455
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
alkaloid sensitivity phenotype
caffeine resistance phenotype
mchibucos
microbial_phenotype
theophylline resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure.
CHEBI:22315
OMP:WAM
CHEBI:28177
theophylline resistance phenotype
caffeine resistance phenotype
2013-05-23T01:54:51Z
An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7.
OMP:0000456
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
caffeine sensitivity phenotype
mchibucos
microbial_phenotype
An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7.
CHEBI:27732
OMP:WAM
resistant to caffeine
2013-05-23T01:55:13Z
A caffeine resistance phenotype where an organism or cell is resistant to caffeine.
OMP:0000457
mchibucos
microbial_phenotype
A caffeine resistance phenotype where an organism or cell is resistant to caffeine.
OMP:WAM
not resistant to caffeine
2013-05-23T01:55:34Z
A caffeine resistance phenotype where an organism or cell is sensitive to caffeine.
OMP:0000458
caffeine sensitivity
mchibucos
microbial_phenotype
A caffeine resistance phenotype where an organism or cell is sensitive to caffeine.
OMP:WAM
increased caffeine resistance
2013-05-23T01:58:11Z
An altered caffeine resistance phenotype where resistance is increased relative to a designated control.
OMP:0000459
decreased caffeine sensitivity
mchibucos
microbial_phenotype
An altered caffeine resistance phenotype where resistance is increased relative to a designated control.
OMP:WAM
decreased caffeine resistance
2013-05-23T01:58:55Z
An altered caffeine resistance phenotype where resistance is decreased relative to a designated control.
OMP:0000460
increased caffeine sensitivity
mchibucos
microbial_phenotype
An altered caffeine resistance phenotype where resistance is decreased relative to a designated control.
OMP:WAM
outer membrane phenotype
2013-08-22T01:43:06Z
A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall.
OMP:0000461
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall.
ISBN:9780073402406
OMP:DAS
presence of an outer membrane
2013-08-22T01:47:25Z
An outer membrane phenotype where a cell or cells possess an outer membrane.
Diderm
Gram negative
OMP:0000462
microbial_phenotype
mycolate outer membrane
siegele
An outer membrane phenotype where a cell or cells possess an outer membrane.
OMP:DAS
increased number of pili
2013-08-22T01:48:57Z
A pilus phenotype where there is an increased number of pili per cell relative to a designated control.
OMP:0000463
microbial_phenotype
siegele
A pilus phenotype where there is an increased number of pili per cell relative to a designated control.
OMP:DAS
absence of an outer membrane
2013-08-22T01:53:29Z
An outer membrane phenotype where a cell or cells lack an outer membrane.
OMP:0000464
microbial_phenotype
siegele
An outer membrane phenotype where a cell or cells lack an outer membrane.
OMP:DAS
decreased aerotaxis
2012-11-02T01:20:31Z
An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control.
OMP:0000500
mchibucos
microbial_phenotype
An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control.
OMP:DAS
increased aerotaxis
2012-11-02T01:21:21Z
An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control.
OMP:0000502
mchibucos
microbial_phenotype
An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control.
OMP:DAS
decreased chemotaxis
2012-11-02T01:22:28Z
An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control.
OMP:0000503
mchibucos
microbial_phenotype
An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control.
OMP:DAS
increased chemotaxis
2012-11-02T01:23:12Z
An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control.
OMP:0000505
mchibucos
microbial_phenotype
An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control.
OMP:DAS
Increased negative supercoiling
2013-08-22T05:57:07Z
An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control.
OMP:0001001
microbial_phenotype
wmeza
An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control.
OMP:WAM
decreased negative supercoiling
2013-08-22T05:57:56Z
An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control.
OMP:0001002
microbial_phenotype
wmeza
An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control.
OMP:WAM
phospholipase activity phenotype
2016-01-26T15:01:05Z
An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid.
GO:0004620
Jesus
OMP:0005000
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid.
OMP:JG
phospholipase activity
GO:0004620
altered caffeine resistance
2014-07-23T12:18:08Z
A caffeine resistance phenotype that is altered relative to a designated control.
OMP:0005001
microbial_phenotype
wmeza
A caffeine resistance phenotype that is altered relative to a designated control.
OMP:WAM
temperature effects on population growth phenotype
2013-09-03T01:06:05Z
A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment.
OMP:0005002
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
temperature requirement for growth
wmeza
A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment.
OMP:WAM
hyperthermophile
2013-09-03T01:29:51Z
A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C.
OMP:0005003
microbial_phenotype
wmeza
A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C.
ISBN:9780073402406
OMP:WAM
thermophile
2013-09-03T01:36:26Z
A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C.
OMP:0005004
microbial_phenotype
wmeza
A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C.
ISBN:9780073402406
OMP:WAM
mesophile
2013-09-04T13:24:06Z
A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C.
OMP:0005005
microbial_phenotype
wmeza
A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C.
ISBN:9780073402406
OMP:WAM
psychrotroph
2013-09-04T13:38:56Z
A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C.
OMP:0005006
microbial_phenotype
wmeza
A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C.
ISBN:9780073402406
OMP:WAM
psychrophile
2013-09-04T13:40:27Z
A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower.
OMP:0005007
microbial_phenotype
wmeza
A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower.
ISBN:9780073402406
OMP:WAM
pH effects on population growth phenotype
2013-09-04T13:57:28Z
A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment.
OMP:0005008
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment.
OMP:WAM
acidophile
2013-09-04T16:18:28Z
A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5.
OMP:0005009
microbial_phenotype
wmeza
A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5.
ISBN:9780073402406
OMP:WAM
neutrophile
2013-09-04T16:21:50Z
A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0.
OMP:0005010
microbial_phenotype
wmeza
A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0.
ISBN:780073402406
OMP:WAM
alkaliphile
2013-09-04T16:24:24Z
A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5.
OMP:0005011
microbial_phenotype
wmeza
A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5.
ISBN:9780073402406
OMP:WAM
pressure effects on population growth phenotype
2013-09-09T11:42:28Z
A population growth range phenotype related to how growth of a microbial population is affected by pressure.
OMP:0005012
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A population growth range phenotype related to how growth of a microbial population is affected by pressure.
OMP:WAM
solute and water activity effects on population growth phenotype
2013-09-09T11:43:45Z
A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment.
OMP:0005013
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment.
OMP:WAM
piezophilic growth
2013-09-09T11:49:53Z
A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure.
OMP:0005014
barophilic growth
microbial_phenotype
wmeza
ISBN:9780073402406
barophilic growth
A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure.
ISBN:9780073402406
OMP:WAM
osmotolerant growth
2013-09-09T13:05:24Z
A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration.
OMP:0005015
microbial_phenotype
wmeza
A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration.
ISBN:9780073402406
OMP:WAM
halophilic growth
2013-09-09T13:06:03Z
A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M.
OMP:0005016
microbial_phenotype
wmeza
A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M.
ISBN:9780073402406
OMP:WAM
SOS response phenotype
2013-09-18T18:35:30Z
A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage.
DNA damage response
OMP:0005017
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage.
ISBN:9781615831838
OMP:WAM
altered SOS response phenotype
2013-09-19T13:39:34Z
An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control.
OMP:0005018
microbial_phenotype
wmeza
An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control.
OMP:WAM
absence of phospholipase activity
2016-01-26T15:16:42Z
A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity.
Jesus
OMP:0005019
microbial_phenotype
A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity.
OMP:JG
increased basal expression of the SOS response
2013-09-19T15:54:21Z
An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control.
OMP:0005020
microbial_phenotype
wmeza
An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control.
OMP:WAM
decreased basal expression of the SOS response
2013-09-19T15:55:16Z
An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control.
OMP:0005021
microbial_phenotype
wmeza
An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control.
OMP:WAM
absence of an SOS response
2013-09-19T16:25:09Z
An SOS response phenotype where a cell or cells lack an SOS response.
OMP:0005022
microbial_phenotype
wmeza
An SOS response phenotype where a cell or cells lack an SOS response.
OMP:WAM
presence of an SOS response
2013-09-19T16:25:30Z
An SOS response phenotype where a cell or cells exhibit an SOS response.
OMP:0005023
microbial_phenotype
wmeza
An SOS response phenotype where a cell or cells exhibit an SOS response.
OMP:WAM
increased induced expression of the SOS response
2013-09-20T13:01:05Z
An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control.
OMP:0005024
microbial_phenotype
wmeza
An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control.
OMP:WAM
decreased induced expression of the SOS response
2013-09-20T13:26:46Z
An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control.
OMP:0005025
microbial_phenotype
wmeza
An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control.
OMP:WAM
presence of phospholipase activity
2016-01-26T15:17:15Z
A phospholipase activity phenotype where an organism exhibits phospholipase activity.
Jesus
OMP:0005026
microbial_phenotype
A phospholipase activity phenotype where an organism exhibits phospholipase activity.
OMP:JG
stress-induced mutagenesis phenotype
2013-09-20T15:00:09Z
A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress.
OMP:0005027
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress.
OMP:WAM
PMID:17917874
PMID:3045565
altered phospholipase activity
2016-01-26T15:17:51Z
A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control.
Jesus
OMP:0005028
microbial_phenotype
A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control.
OMP:JG
altered tetracycline resistance
2014-07-23T17:05:20Z
A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control.
OMP:0005029
microbial_phenotype
wmeza
A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control.
OMP:WAM
increased stress-induced mutagenesis
2013-09-25T15:57:03Z
An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control.
OMP:0005030
microbial_phenotype
wmeza
An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control.
OMP:WAM
decreased stress-induced mutagenesis
2013-09-25T15:57:46Z
An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control.
OMP:0005031
microbial_phenotype
wmeza
An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control.
OMP:WAM
presence of stress-induced mutagenesis
2013-09-25T15:59:12Z
A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis.
OMP:0005032
microbial_phenotype
wmeza
A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis.
OMP:WAM
absence of stress-induced mutagenesis
2013-09-25T18:20:22Z
A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis.
OMP:0005033
microbial_phenotype
wmeza
A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis.
OMP:WAM
altered quinolone resistance
2014-07-23T17:13:45Z
A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control.
OMP:0005034
microbial_phenotype
wmeza
A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control.
OMP:WAM
quick-stop DNA replication
2013-10-15T17:51:12Z
A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition.
OMP:0005035
microbial_phenotype
wmeza
A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition.
OMP:JHU
OMP:WAM
slow-stop DNA replication
2013-10-15T17:51:40Z
A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift.
OMP:0005036
microbial_phenotype
wmeza
A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift.
OMP:JHU
OMP:WAM
origin-independent replication
2013-10-15T18:53:12Z
A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication.
OMP:0005037
microbial_phenotype
wmeza
A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication.
OMP:WAM
response to oxidative stress phenotype
2013-10-15T18:59:38Z
OMP:0005038
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
response to freeze/thaw stress phenotype
2013-10-15T18:59:52Z
A stress response phenotype dealing with the response to cyclic freezing and melting.
OMP:0005039
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A stress response phenotype dealing with the response to cyclic freezing and melting.
ISBN:1555810489
OMP:WAM
response to acid pH stress phenotype
2013-10-16T17:14:52Z
A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5.
OMP:0005040
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5.
OMP:WAM
response to alkaline pH stress phenotype
2013-10-16T17:15:59Z
A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5.
OMP:0005041
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5.
OMP:WAM
homologous recombination phenotype
2013-10-18T18:34:37Z
A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA.
OMP:0005042
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA.
ISBN:9780471768654
OMP:WAM
site-specific recombination phenotype
2013-10-18T18:34:58Z
A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA.
OMP:0005043
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA.
ISBN:9780471768654
OMP:WAM
altered mitotic recombination
2014-07-24T13:27:41Z
A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control.
OMP:0005044
microbial_phenotype
wmeza
A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control.
OMP:WAM
mitotic recombination phenotype
2013-10-18T18:38:05Z
A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles.
OMP:0005045
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles.
ISBN:9780198529170
OMP:WAM
gene silencing phenotype
2013-10-18T18:38:43Z
A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation.
GO:0016458
OMP:0005046
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation.
GO:0016458
OMP:WAM
gene silencing
GO:0016458
chromosome segregation phenotype
2013-10-18T18:39:04Z
A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
GO::0007059
OMP:0005047
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
GO:0007059
OMP:WAM
chromosome segregation
GO::0007059
mutation frequency phenotype
2013-10-18T18:39:27Z
A genetic material phenotype dealing with the frequency of mutations.
OMP:0005048
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A genetic material phenotype dealing with the frequency of mutations.
ISBN:9780198529170
OMP:WAM
increased frequency of homologous recombination
2013-10-23T19:46:15Z
A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control.
OMP:0005049
microbial_phenotype
wmeza
A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control.
OMP:WAM
decreased frequency of homologous recombination
2013-10-24T12:52:41Z
A homologous recombination phenotype where homologous recombination is decreased relative to a designated control.
OMP:0005050
microbial_phenotype
wmeza
A homologous recombination phenotype where homologous recombination is decreased relative to a designated control.
OMP:WAM
presence of homologous recombination
2013-10-25T12:21:41Z
A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination.
OMP:0005051
microbial_phenotype
wmeza
A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination.
OMP:WAM
absence of homologous recombination
2013-10-25T12:22:04Z
A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination.
OMP:0005052
microbial_phenotype
wmeza
A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination.
OMP:WAM
altered induced expression of the SOS response
2014-07-30T12:34:21Z
An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control.
OMP:0005053
microbial_phenotype
wmeza
An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control.
OMP:WAM
altered basal expression of the SOS response
2014-07-30T12:58:59Z
An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control.
OMP:0005054
microbial_phenotype
wmeza
An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control.
OMP:WAM
increased frequency of site-specific recombination
2013-10-29T13:14:25Z
A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control.
OMP:0005055
microbial_phenotype
wmeza
A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control.
OMP:WAM
decreased frequency of site-specific recombination
2013-10-29T13:15:06Z
A site specific recombination phenotype where site specific recombination is decreased relative to a designated control.
OMP:0005056
microbial_phenotype
wmeza
A site specific recombination phenotype where site specific recombination is decreased relative to a designated control.
OMP:WAM
absence of site-specific recombination
2013-10-29T13:15:28Z
A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination.
OMP:0005057
microbial_phenotype
wmeza
A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination.
OMP:WAM
presence of site-specific recombination
2013-10-29T13:20:16Z
A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination.
OMP:0005058
microbial_phenotype
wmeza
A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination.
OMP:WAM
transposable element transposition phenotype
2013-10-30T18:35:34Z
A genetic material phenotype dealing with DNA sequences that change positions within the genome.
APO:0000047
GO:0032196
OMP:0005059
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
transposition
GO:0032196
transposable element transposition
APO:0000047
A genetic material phenotype dealing with DNA sequences that change positions within the genome.
ISBN:9780198529170
OMP:WAM
decreased frequency of chromosome missegregation
2013-11-04T18:09:09Z
An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control.
OMP:0005060
microbial_phenotype
wmeza
An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control.
OMP:WAM
increased frequency of chromosome missegregation
2013-11-04T18:09:38Z
An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control.
OMP:0005061
increased aneuploidy
microbial_phenotype
wmeza
An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control.
OMP:WAM
increased phospholipase activity
2016-01-26T15:18:34Z
An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control.
Jesus
OMP:0005062
microbial_phenotype
An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control.
OMP:JG
decreased phospholipase activity
2016-01-26T15:19:23Z
An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control.
Jesus
OMP:0005063
microbial_phenotype
An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control.
OMP:JG
increased frequency of gene silencing
2013-11-04T18:21:37Z
An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control.
OMP:0005064
microbial_phenotype
wmeza
An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control.
OMP:WAM
decreased frequency of gene silencing
2013-11-04T18:21:56Z
An gene silencing phenotype where gene silencing is decreased relative to a designated control.
OMP:0005065
microbial_phenotype
wmeza
An gene silencing phenotype where gene silencing is decreased relative to a designated control.
OMP:WAM
absence of gene silencing
2013-11-04T18:33:14Z
A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing.
OMP:0005066
microbial_phenotype
wmeza
A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing.
OMP:WAM
presence of gene silencing
2013-11-04T18:34:20Z
A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing.
OMP:0005067
microbial_phenotype
wmeza
A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing.
OMP:WAM
increased mutation frequency
2013-11-08T17:05:44Z
An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control.
OMP:0005068
microbial_phenotype
wmeza
An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control.
OMP:WAM
decreased mutation frequency
2013-11-08T17:11:14Z
An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control.
OMP:0005069
microbial_phenotype
wmeza
An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control.
OMP:WAM
increased mitotic recombination
2013-11-08T17:11:59Z
An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control.
OMP:0005070
microbial_phenotype
wmeza
An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control.
OMP:WAM
decreased mitotic recombination
2013-11-08T17:12:27Z
An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control.
OMP:0005071
microbial_phenotype
wmeza
An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control.
OMP:WAM
absence of mitotic recombination
2013-11-08T17:35:56Z
A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination.
OMP:0005072
microbial_phenotype
wmeza
A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination.
OMP:WAM
presence of mitotic recombination
2013-11-08T17:36:20Z
A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination.
OMP:0005073
microbial_phenotype
wmeza
A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination.
OMP:WAM
increased rate of transposable element transposition
2013-11-11T13:41:50Z
A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control.
OMP:0005074
microbial_phenotype
wmeza
A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control.
OMP:WAM
decreased rate of transposable element transposition
2013-11-11T13:42:44Z
A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control.
OMP:0005075
microbial_phenotype
wmeza
A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control.
OMP:WAM
increased resistance to acidic pH stress
2013-11-15T18:09:55Z
An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control.
OMP:0005076
decreased acidic pH sensitivity
microbial_phenotype
wmeza
OMP:WAM
decreased acidic pH sensitivity
An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control.
OMP:WAM
decreased resistance to acidic pH stress
2013-11-15T18:12:48Z
An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control.
OMP:0005077
increased sensitivity to acid pH stress
microbial_phenotype
wmeza
An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control.
OMP:WAM
OMP:WAM
increased sensitivity to acid pH stress
increased resistance to alkaline pH stress
2013-11-15T18:14:08Z
An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control.
OMP:0005078
decreased alkaline pH sensitivity
microbial_phenotype
wmeza
OMP:WAM
decreased alkaline pH sensitivity
An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control.
OMP:WAM
decreased resistance to alkaline pH stress
2013-11-15T18:16:03Z
An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control.
OMP:0005079
increased alkaline pH sensitivity
microbial_phenotype
wmeza
OMP:WAM
increased alkaline pH sensitivity
An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control.
OMP:WAM
response to dessication stress phenotype
2013-11-18T11:42:37Z
A stress response phenotype dealing with the removal or immobilisation of water.
OMP:0005080
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A stress response phenotype dealing with the removal or immobilisation of water.
ISBN:9780471138228
OMP:WAM
response to radiation stress phenotype
2013-11-18T11:50:57Z
A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths.
OMP:0005081
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
radiation resistance
wmeza
A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths.
OMP:WAM
response to thermotolerance stress phenotype
2013-11-18T12:22:55Z
A stress response phenotype dealing with the resistance response to normally lethal high temperature levels.
OMP:0005082
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A stress response phenotype dealing with the resistance response to normally lethal high temperature levels.
OMP:WAM
response to ionizing radiation phenotype
2013-11-22T15:55:45Z
A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation.
OMP:0005083
microbial_phenotype
wmeza
A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation.
ISBN:9780471387350
OMP:WAM
resistance to UV radiation phenotype
2013-11-22T15:56:27Z
A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm).
OMP:0005084
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm).
ISO:21348
OMP:WAM
resistance to gamma-ray radiation phenotype
2013-11-22T16:04:42Z
A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation.
OMP:0005085
microbial_phenotype
wmeza
A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation.
OMP:WAM
resistance to x-ray radiation
2013-11-22T16:05:02Z
A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays.
OMP:0005086
microbial_phenotype
wmeza
A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays.
OMP:WAM
increased resistance to dessication stress
2013-12-06T14:14:31Z
An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control.
OMP:0005087
decreased dessication sensitivity
microbial_phenotype
wmeza
OMP:WAM
decreased dessication sensitivity
An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control.
OMP:WAM
decreased resistance to dessication stress
2013-12-06T14:15:06Z
An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control.
OMP:0005088
increased dessication sensitivity
microbial_phenotype
wmeza
OMP:WAM
increased dessication sensitivity
An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control.
OMP:WAM
increased resistance to freeze/thawing stress
2013-12-06T14:28:16Z
An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control.
OMP:0005089
microbial_phenotype
wmeza
An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control.
OMP:WAM
decreased resistance to freeze/thawing stress
2013-12-06T14:28:46Z
An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control.
OMP:0005090
decreased freeze/thaw sensitivity.
microbial_phenotype
wmeza
OMP:WAM
decreased freeze/thaw sensitivity.
An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control.
OMP:WAM
increased resistance to oxidative stress
2013-12-06T17:57:46Z
An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control.
OMP:0005091
decreased sensitivity to oxidative stress
microbial_phenotype
wmeza
An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control.
OMP:WAM
OMP:WAM
decreased sensitivity to oxidative stress
decreased resistance to oxidative stress
2013-12-06T17:59:14Z
An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control.
OMP:0005092
increased sensitivity to oxidative stress
microbial_phenotype
wmeza
An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control.
OMP:WAM
OMP:WAM
increased sensitivity to oxidative stress
increased resistance to gamma-ray radiation
2013-12-17T13:05:40Z
An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control.
OMP:0005093
decreased gamma ray sensitivity
microbial_phenotype
wmeza
OMP:WAM
decreased gamma ray sensitivity
An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control.
OMP:WAM
decreased resistance to gamma-ray radiation
2013-12-17T13:06:05Z
An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control.
OMP:0005094
increased gamma ray sensitivity
microbial_phenotype
wmeza
OMP:WAM
increased gamma ray sensitivity
An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control.
OMP:WAM
increased resistance to x-ray radiation
2013-12-17T13:26:43Z
An altered x-ray radiation phenotype were resistance is increased relative to a designated control.
OMP:0005095
decreased x-ray sensitivity
microbial_phenotype
wmeza
OMP:WAM
decreased x-ray sensitivity
An altered x-ray radiation phenotype were resistance is increased relative to a designated control.
OMP:WAM
decreased resistance to x-ray radiation
2013-12-17T13:28:20Z
An altered x-ray radiation phenotype where resistance is decreased relative to a designated control.
OMP:0005096
increased x-ray sensitivity
microbial_phenotype
wmeza
An altered x-ray radiation phenotype where resistance is decreased relative to a designated control.
OMP:WAM
OMP:WAM
increased x-ray sensitivity
increased resistance to UV radiation
2013-12-17T13:41:53Z
An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control.
OMP:0005097
decreased UV sensitivity
microbial_phenotype
wmeza
OMP:WAM
decreased UV sensitivity
An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control.
OMP:WAM
decreased resistance to UV radiation
2013-12-17T13:43:32Z
An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control.
OMP:0005098
increased UV sensitivity
microbial_phenotype
wmeza
An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control.
OMP:WAM
OMP:WAM
increased UV sensitivity
response to starvation stress phenotype
2014-01-21T12:13:04Z
A stress response phenotype dealing with the response to deprivation of nourishment.
OMP:0005099
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A stress response phenotype dealing with the response to deprivation of nourishment.
GO:0009267
OMP:WAM
macrolide dependent growth
2014-02-11T11:53:51Z
A growth phenotype where growth is dependent on the presence of a macrolide.
OMP:0005100
erythromycin dependent growth
microbial_phenotype
wmeza
A growth phenotype where growth is dependent on the presence of a macrolide.
OMP:WAM
aminoglycoside dependent growth
2014-02-11T11:54:51Z
A growth phenotype where growth is dependent on the presence of an aminoglycoside.
OMP:0005101
microbial_phenotype
streptomycin dependent growth
wmeza
A growth phenotype where growth is dependent on the presence of an aminoglycoside.
OMP:WAM
increased enzymatic activity
2014-04-17T10:54:45Z
An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control.
OMP:0005102
microbial_phenotype
wmeza
An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control.
OMP:WAM
decreased catalytic activity
2014-04-17T10:55:05Z
An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control.
OMP:0005103
microbial_phenotype
wmeza
An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control.
OMP:WAM
abolished resistance to dessication stress
2014-07-17T13:11:33Z
A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished.
OMP:0005104
microbial_phenotype
wmeza
A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished.
OMP:WAM
abolished resistance to freeze/thawing stress
2014-07-17T14:10:28Z
A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished.
OMP:0005105
microbial_phenotype
wmeza
A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished.
OMP:WAM
increased lifespan
2014-05-07T12:39:57Z
A lifespan phenotype where lifespan is increased relative to a designated control.
OMP:0005106
microbial_phenotype
wmeza
A lifespan phenotype where lifespan is increased relative to a designated control.
OMP:WAM
decreased lifespan
2014-05-07T12:40:14Z
An altered lifespan phenotype where the lifespan is decreased relative to a designated control.
OMP:0005107
microbial_phenotype
wmeza
An altered lifespan phenotype where the lifespan is decreased relative to a designated control.
OMP:WAM
increased cell diameter
2014-07-02T18:39:12Z
MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control.
TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control.
--------------------
SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control.
OMP:0005108
OMP:0007664
increased cell width
microbial_phenotype
wmeza
MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control.
TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control.
--------------------
SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control.
OMP:DAS
OMP:WAM
decreased cell diameter
2014-07-02T18:46:00Z
MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control.
TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control.
--------------------
SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control.
OMP:0005109
OMP:0007665
decreased cell width
microbial_phenotype
wmeza
MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control.
TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control.
--------------------
SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control.
OMP:DAS
OMP:WAM
abolished phospholipase activity
2016-01-26T15:19:53Z
A decreased phospholipase activity phenotype where phospholipase activity is abolished.
Jesus
OMP:0005110
microbial_phenotype
A decreased phospholipase activity phenotype where phospholipase activity is abolished.
OMP:JG
resistance to killing by host phenotype
2016-02-02T13:52:43Z
A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host.
APO:0000324
Jesus
OMP:0005111
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
resistance to killing by host cells
APO:0000324
A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host.
OMP:JG
response to SDS-EDTA stress phenotype
2014-07-07T13:21:43Z
A stress response phenotype dealing with the response to exposure to SDS-EDTA.
OMP:0005112
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A stress response phenotype dealing with the response to exposure to SDS-EDTA.
OMP:WAM
decreased resistance to SDS-EDTA stress
2014-07-07T13:50:24Z
An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control.
OMP:0005113
microbial_phenotype
wmeza
An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control.
OMP:WAM
increased resistance to SDS-EDTA stress
2014-07-07T13:50:45Z
An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control.
OMP:0005114
microbial_phenotype
wmeza
An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control.
OMP:WAM
cell cycle phenotype
2014-08-07T14:54:52Z
A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division.
GO:0007049
OMP:0005115
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
cell division cycle
cell division phenotype
microbial_phenotype
wmeza
A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division.
GO:0007049
OMP:WAM
cell cycle
GO:0007049
multi-organism process phenotype
2014-07-08T17:10:17Z
A microbial phenotype related to a biological process that involves two or more organisms of the same or different species.
GO:0051704
OMP:0005116
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
wmeza
A microbial phenotype related to a biological process that involves two or more organisms of the same or different species.
GO:0051704
OMP:DAS
multi-organism process
GO:0051704
presence of hemolysis
2014-07-08T17:55:17Z
A hemolysis test phenotype where a cell or cells causes hemolysis.
OMP:0005117
microbial_phenotype
wmeza
A hemolysis test phenotype where a cell or cells causes hemolysis.
OMP:WAM
altered resistance to acidic pH stress phenotype
2014-07-11T12:55:53Z
A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control.
OMP:0005118
microbial_phenotype
wmeza
A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control.
OMP:WAM
altered resistance to alkaline pH stress phenotype
2014-07-11T12:58:56Z
A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control.
OMP:0005119
microbial_phenotype
wmeza
A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control.
OMP:WAM
altered resistance to dessication stress phenotype
2014-07-11T12:59:47Z
A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control.
OMP:0005120
microbial_phenotype
wmeza
A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control.
OMP:WAM
altered resistance to freeze/thaw stress
2014-07-11T13:00:23Z
A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control.
OMP:0005121
microbial_phenotype
wmeza
A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control.
OMP:JCH
altered resistance to oxidative stress
2014-07-11T13:03:36Z
A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control.
OMP:0005122
microbial_phenotype
wmeza
A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control.
OMP:WAM
altered resistance to gamma-ray radiation
2014-07-11T13:16:15Z
A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control.
OMP:0005123
microbial_phenotype
wmeza
A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control.
OMP:WAM
altered resistance to x-ray radiation
2014-07-11T13:16:47Z
A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control.
OMP:0005124
microbial_phenotype
wmeza
A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control.
OMP:WAM
altered UV-radiation resistance
2014-07-11T13:56:51Z
A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control.
OMP:0005125
microbial_phenotype
wmeza
A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control.
OMP:WAM
altered resistance to SDS-EDTA stress
2014-07-11T13:57:22Z
An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control.
OMP:0005126
microbial_phenotype
wmeza
An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control.
OMP:WAM
abolished resistance to acidic pH stress
2014-07-15T16:46:17Z
A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished.
OMP:0005127
microbial_phenotype
wmeza
A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished.
OMP:WAM
abolished resistance to alkaline pH stress
2014-07-15T17:31:56Z
A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished.
OMP:0005128
microbial_phenotype
wmeza
A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished.
OMP:WAM
altered biofilm formation
2014-07-16T12:36:13Z
A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control.
OMP:0005129
microbial_phenotype
wmeza
A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control.
OMP:WAM
altered enzymatic activity
2014-07-16T17:48:24Z
An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control.
OMP:0005130
microbial_phenotype
wmeza
An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control.
OMP:JCH
abolished resistance to oxidative stress
2014-07-17T14:18:37Z
A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished.
OMP:0005131
microbial_phenotype
wmeza
A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished.
OMP:WAM
abolished resistance to gamma ray radiation
2014-07-17T14:23:39Z
A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished.
OMP:0005132
microbial_phenotype
wmeza
A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished.
OMP:WAM
abolished resistance to x-ray radiation
2014-07-17T14:28:44Z
A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished.
OMP:0005133
microbial_phenotype
wmeza
A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished.
OMP:WAM
abolished resistance to UV radiation
2014-07-17T17:22:15Z
A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished.
OMP:0005134
microbial_phenotype
wmeza
A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished.
OMP:WAM
abolished resistance to SDS-EDTA stress
2014-07-17T17:39:39Z
A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished.
OMP:0005135
microbial_phenotype
wmeza
A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished.
OMP:WAM
altered cell cycle
2014-08-07T14:55:46Z
A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control.
OMP:0005136
abnormal cell cycle
microbial_phenotype
wmeza
A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control.
OMP:WAM
FYPO:0000011
abnormal cell cycle
increased septation
2014-08-07T14:57:39Z
An altered septation phenotype where formation of new cell septa is increased relative to a designated control.
OMP:0005137
microbial_phenotype
wmeza
An altered septation phenotype where formation of new cell septa is increased relative to a designated control.
OMP:WAM
decreased septation
2014-08-07T14:58:34Z
An altered septation phenotype where formation of new cell septa is decreased relative to a designated control.
OMP:0005138
microbial_phenotype
wmeza
An altered septation phenotype where formation of new cell septa is decreased relative to a designated control.
OMP:WAM
presence of resistance to killing by host
2016-02-02T13:54:09Z
A resistance to killing by host phenotype where a microbe is resistant to killing by a host.
Jesus
OMP:0005139
microbial_phenotype
A resistance to killing by host phenotype where a microbe is resistant to killing by a host.
OMP:JG
absence of resistance to killing by host
2016-02-02T13:54:58Z
A resistance to killing by host phenotype where a microbe is sensitive to killing by a host.
Jesus
OMP:0005140
microbial_phenotype
A resistance to killing by host phenotype where a microbe is sensitive to killing by a host.
OMP:JG
altered resistance to killing by host
2016-02-02T13:55:50Z
A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control.
Jesus
OMP:0005141
microbial_phenotype
A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control.
OMP:JG
increased resistance to killing by host
2016-02-02T13:57:14Z
An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control.
Jesus
OMP:0005142
microbial_phenotype
An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control.
OMP:JG
decreased resistance to killing by host
2016-02-02T13:57:57Z
An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control.
Jesus
OMP:0005143
microbial_phenotype
An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control.
OMP:JG
vacuolar morphology phenotype
2016-02-03T16:33:50Z
A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions.
GO:0005773
Jesus
OMP:0005144
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
vacuole
GO:0005773
A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions.
GO:0005773
OMP:JG
altered vacuolar morphology
2016-02-03T16:37:58Z
A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control.
Jesus
OMP:0005145
microbial_phenotype
A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control.
OMP:JG
decreased vacuolar size
2016-02-03T16:39:06Z
An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control.
Jesus
OMP:0005146
microbial_phenotype
An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control.
OMP:JG
increased vacuolar size
2016-02-03T16:39:51Z
An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control.
Jesus
OMP:0005147
microbial_phenotype
An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control.
OMP:JG
ferric reductase activity phenotype
2016-02-11T12:43:04Z
An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor.
Jesus
OMP:0005148
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor.
OMP:JG
absence of ferric reductase activity
2016-02-11T12:44:19Z
A ferric reductase phenotype where an organism does not exhibit ferric reductase activity.
Jesus
OMP:0005149
microbial_phenotype
A ferric reductase phenotype where an organism does not exhibit ferric reductase activity.
OMP:JG
altered ferric reductase activity
2016-02-11T12:44:51Z
A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control.
Jesus
OMP:0005150
microbial_phenotype
A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control.
OMP:JG
decreased ferric reductase activity
2016-02-11T12:45:18Z
An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control.
Jesus
OMP:0005151
microbial_phenotype
An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control.
OMP:JG
increased ferric reductase activity
2016-02-11T12:45:43Z
An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control.
Jesus
OMP:0005152
microbial_phenotype
An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control.
OMP:JG
presence of ferric reductase activity
2016-02-11T12:46:10Z
A ferric reductase phenotype where an organism exhibits ferric reductase activity.
Jesus
OMP:0005153
microbial_phenotype
A ferric reductase phenotype where an organism exhibits ferric reductase activity.
OMP:JG
protein kinase A activity phenotype
2016-02-11T13:11:51Z
An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors.
Jesus
OMP:0005154
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors.
OMP:JG
absence of protein kinase A activity
2016-02-11T13:12:38Z
A protein kinase A phenotype where an organism does not exhibit protein kinase A activity.
Jesus
OMP:0005155
microbial_phenotype
A protein kinase A phenotype where an organism does not exhibit protein kinase A activity.
OMP:JG
altered protein kinase A activity
2016-02-11T13:14:19Z
A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control.
Jesus
OMP:0005156
microbial_phenotype
A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control.
OMP:JG
decreased protein kinase A activity
2016-02-11T13:14:52Z
An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control.
Jesus
OMP:0005157
microbial_phenotype
An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control.
OMP:JG
increased protein kinase A activity
2016-02-11T13:15:29Z
An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control.
Jesus
OMP:0005158
microbial_phenotype
An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control.
OMP:JG
presence of protein kinase A activity
2016-02-11T13:16:11Z
A protein kinase A phenotype where an organism exhibits protein kinase A activity.
Jesus
OMP:0005159
microbial_phenotype
A protein kinase A phenotype where an organism exhibits protein kinase A activity.
OMP:JG
phosphatase activity phenotype
2016-02-11T13:29:38Z
An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive.
Jesus
OMP:0005160
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive.
OMP:JG
absence of phosphatase activity
2016-02-11T13:31:39Z
A phosphatase phenotype where an organism does not exhibit Phosphatase activity.
Jesus
OMP:0005161
microbial_phenotype
A phosphatase phenotype where an organism does not exhibit Phosphatase activity.
OMP:JG
altered phosphatase activity
2016-02-11T13:32:34Z
A phosphatase phenotype where phosphatase activity is altered relative to a designated control.
Jesus
OMP:0005162
microbial_phenotype
A phosphatase phenotype where phosphatase activity is altered relative to a designated control.
OMP:JG
decreased phosphatase activity
2016-02-11T13:33:05Z
A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control.
Jesus
OMP:0005163
microbial_phenotype
A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control.
OMP:JG
increased phosphatase activity
2016-02-11T13:35:13Z
An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control.
Jesus
OMP:0005164
microbial_phenotype
An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control.
OMP:JG
presence of phosphatase activity
2016-02-11T13:37:34Z
A phosphatase phenotype where an organism exhibits phosphatase activity.
Jesus
OMP:0005165
microbial_phenotype
A phosphatase phenotype where an organism exhibits phosphatase activity.
OMP:JG
superoxide dismutase activity phenotype
2016-02-15T15:25:14Z
An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
GO:0004784
Jesus
OMP:0005166
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
GO:0004784
OMP:JG
superoxide dismutase activity
GO:0004784
absence of superoxide dismutase activity
2016-02-15T15:28:14Z
A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity.
Jesus
OMP:0005167
microbial_phenotype
A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity.
OMP:JG
altered superoxide dismutase activity
2016-02-15T15:29:30Z
A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control.
Jesus
OMP:0005168
microbial_phenotype
A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control.
OMP:JG
decreased superoxide dismutase activity
2016-02-15T15:30:28Z
A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control.
Jesus
OMP:0005169
microbial_phenotype
A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control.
OMP:JG
increased superoxide dismutase activity
2016-02-15T15:31:28Z
An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control.
Jesus
OMP:0005170
microbial_phenotype
An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control.
OMP:JG
presence of superoxide dismutase activity
2016-02-15T15:32:13Z
A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity.
Jesus
OMP:0005171
microbial_phenotype
A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity.
OMP:JG
delayed cell cycle progression
2016-02-15T16:34:58Z
An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control.
Jesus
OMP:0005172
microbial_phenotype
An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control.
OMP:JG
acid phosphatase activity phenotype
2016-05-18T14:29:30Z
An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum.
GO:0003993
Jesus
OMP:0005173
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
acid phosphatase activity
GO:0003993
An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum.
OMP:JG
presence of acid phosphatase activity
2016-05-18T14:33:20Z
An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity.
Jesus
OMP:0005174
microbial_phenotype
An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity.
OMP:JG
absence of acid phosphatase activity
2016-05-18T14:39:41Z
An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity.
Jesus
OMP:0005175
microbial_phenotype
An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity.
OMP:JG
altered acid phosphatase activity
2016-05-18T14:40:33Z
An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control.
Jesus
OMP:0005176
microbial_phenotype
An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control.
OMP:JG
decreased acid phosphatase activity
2016-05-18T14:41:06Z
An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control.
Jesus
OMP:0005177
microbial_phenotype
An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control.
OMP:JG
abolished acid phosphatase activity
2016-05-18T14:41:52Z
A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished.
Jesus
OMP:0005178
microbial_phenotype
A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished.
OMP:JG
increased acid phosphatase activity
2016-05-18T14:43:12Z
An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control.
Jesus
OMP:0005179
microbial_phenotype
An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control.
OMP:JG
cytoskeleton morphology phenotype
2016-05-21T09:09:03Z
A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell.
GO:0005856
Jesus
OMP:0005180
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
cytoskeleton
GO:0005856
A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell.
OMP:JG
altered cytoskeleton morphology phenotype
2016-05-21T09:57:50Z
A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control.
Jesus
OMP:0005181
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control.
GO:JG
actin cytoskeleton morphology phenotype
2016-05-21T09:59:30Z
A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell.
GO:00015629
Jesus
OMP:0005182
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell.
OMP:JG
absence of actin cytoskeleton
2016-05-21T10:01:36Z
An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton.
Jesus
OMP:0005183
microbial_phenotype
An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton.
OMP:JG
presence of actin cytoskeleton
2016-05-21T10:03:01Z
An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton.
Jesus
OMP:0005184
microbial_phenotype
An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton.
OMP:JG
altered actin cytoskeleton morphology
2016-05-21T10:03:47Z
An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control.
Jesus
OMP:0005185
microbial_phenotype
An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control.
OMP:JG
decreased cytoskeleton phenotype
2016-05-21T10:04:40Z
An altered cytoskeleton morphology phenotype where
cytoskeleton morphology is decreased relative to a designated control.
Jesus
OMP:0005186
microbial_phenotype
true
An altered cytoskeleton morphology phenotype where
cytoskeleton morphology is decreased relative to a designated control.
OMP:JG
abolished cytoskeleton morphology
2016-05-21T10:05:21Z
A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished.
Jesus
OMP:0005187
microbial_phenotype
true
A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished.
OMP:JG
increased cytoskeleton morphology
2016-05-21T10:06:05Z
An altered cytoskeleton morphology phenotype where
cytoskeleton morphology is increased relative to a designated control.
Jesus
OMP:0005188
microbial_phenotype
true
An altered cytoskeleton morphology phenotype where
cytoskeleton morphology is increased relative to a designated control.
OMP:JG
anaerobic population growth phenotype
2016-06-09T15:08:16Z
A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen.
Jesus
OMP:0005189
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen.
OMP:JG
presence of anaerobic population growth
2016-06-09T15:10:36Z
A population growth range phenotype where a microbial population is able to grow in the absence of oxygen.
Jesus
OMP:0005190
microbial_phenotype
A population growth range phenotype where a microbial population is able to grow in the absence of oxygen.
OMP:JG
absence of anaerobic population growth
2016-06-09T15:12:13Z
An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen.
Jesus
OMP:0005191
microbial_phenotype
An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen.
OMP:JG
altered anaerobic population growth
2016-06-09T15:12:52Z
A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control.
Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
Jesus
OMP:0005192
microbial_phenotype
A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control.
OMP:JG
increased anaerobic population growth yield
2016-06-09T15:13:45Z
An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control.
Jesus
OMP:0005193
microbial_phenotype
An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control.
OMP:JG
decreased anaerobic population growth yield
2016-06-09T15:14:35Z
An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control.
Jesus
OMP:0005194
microbial_phenotype
An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control.
OMP:JG
abolished anaerobic population growth
2016-06-09T15:15:50Z
An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished.
Jesus
OMP:0005195
microbial_phenotype
An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished.
OMP:JG
increased anaerobic population growth rate
2016-06-09T15:19:53Z
An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control.
Jesus
OMP:0005196
microbial_phenotype
An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control.
OMP:JG
decreased anaerobic population growth rate
2016-06-09T15:21:49Z
An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control.
Jesus
OMP:0005197
microbial_phenotype
An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control.
OMP:JG
alpha-1,3-mannosyltransferase activity phenotype
2016-06-09T23:05:33Z
An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage.
GO:0000033
Jesus
OMP:0005198
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
alpha-1,3- mannosyltransferase activity
GO:0000033
An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage.
OMP:JG
presence of alpha-1,3-mannosyltransferase activity
2016-06-09T23:08:19Z
An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity.
Jesus
OMP:0005199
microbial_phenotype
An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity.
OMP:JG
absence of alpha-1,3-mannosyltransferase activity
2016-06-09T23:09:26Z
An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity.
Jesus
OMP:0005200
microbial_phenotype
An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity.
GO:JG
altered alpha-1,3-mannosyltransferase activity
2016-06-09T23:13:17Z
An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control.
Jesus
OMP:0005201
microbial_phenotype
An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control.
OMP:JG
increased alpha-1,3-mannosyltransferase activity
2016-06-09T23:14:41Z
An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control.
Jesus
OMP:0005202
microbial_phenotype
An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control.
OMP:JG
decreased alpha-1,3-mannosyltransferase activity
2016-06-09T23:15:42Z
An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control.
Jesus
OMP:0005203
microbial_phenotype
An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control.
OMP:JG
abolished alpha-1,3-mannosyltransferase activity
2016-06-09T23:16:29Z
An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished.
Jesus
OMP:0005204
microbial_phenotype
An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished.
OMP:JG
adhesion phenotype
2016-06-20T14:06:30Z
A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly.
APO:0000288
GO:0022610
Jesus
OMP:0005205
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
biological adhesion
GO:0022610
A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly.
OMP:JG
adhesion
APO:0000288
adhesion to host phenotype
2016-06-20T14:10:51Z
An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship.
GO:0044406
Jesus
OMP:0005206
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
adhesion to host
GO:0044406
An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship.
OMP:JG
absence of adhesion to host
2016-06-20T14:12:43Z
An adhesion to host phenotype where a microbe lacks the ability to attach to a host.
Jesus
OMP:0005207
microbial_phenotype
An adhesion to host phenotype where a microbe lacks the ability to attach to a host.
OMP:JG
presence of adhesion to host
2016-06-20T14:14:40Z
An adhesion to host phenotype where a microbe has the ability to attach to a host.
Jesus
OMP:0005208
microbial_phenotype
An adhesion to host phenotype where a microbe has the ability to attach to a host.
OMP:JG
altered adhesion to host
2016-06-20T14:15:04Z
An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control.
Jesus
OMP:0005209
microbial_phenotype
An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control.
OMP:JG
decreased adhesion to host
2016-06-20T14:16:04Z
An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control.
Jesus
OMP:0005210
microbial_phenotype
An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control.
OMP:JG
abolished adhesion to host
2016-06-20T14:16:42Z
A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished.
Jesus
OMP:0005211
microbial_phenotype
A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished.
OMP:JG
increased adhesion to host
2016-06-20T14:17:26Z
An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control.
Jesus
OMP:0005212
microbial_phenotype
An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control.
OMP:JG
presence of adhesion
2016-06-20T14:19:00Z
An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
Jesus
OMP:0005213
microbial_phenotype
An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
OMP:JG
absence of adhesion
2016-06-20T14:19:34Z
An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
Jesus
OMP:0005214
microbial_phenotype
An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
OMP:JG
altered adhesion
2016-06-20T14:20:13Z
An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control.
Jesus
OMP:0005215
microbial_phenotype
An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control.
OMP:JG
increased adhesion
2016-06-20T14:20:57Z
An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control.
Jesus
OMP:0005216
microbial_phenotype
An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control.
OMP:JG
decreased adhesion
2016-06-20T14:21:29Z
An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control.
Jesus
OMP:0005217
microbial_phenotype
An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control.
OMP:JG
abolished adhesion
2016-06-20T14:22:55Z
A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished.
Jesus
OMP:0005218
microbial_phenotype
A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished.
OMP:JG
cell fusion phenotype
2016-06-20T23:02:09Z
A cellular process phenotype involving the fusion of individual cells from different organisms.
Jesus
OMP:0005219
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cellular process phenotype involving the fusion of individual cells from different organisms.
OMP:JG
presence of cell fusion
2016-06-20T23:03:39Z
A cell fusion phenotype where fusion of individual cells from different organisms occurs.
Jesus
OMP:0005220
microbial_phenotype
A cell fusion phenotype where fusion of individual cells from different organisms occurs.
OMP:JG
altered cell fusion
2016-06-20T23:04:36Z
A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control.
Jesus
OMP:0005221
microbial_phenotype
A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control.
OMP:JG
increased cell fusion
2016-06-20T23:07:58Z
An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control.
Jesus
OMP:0005222
microbial_phenotype
An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control.
OMP:JG
decreased cell fusion
2016-06-20T23:08:40Z
An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control.
Jesus
OMP:0005223
microbial_phenotype
An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control.
OMP:JG
abolished cell fusion
2016-06-20T23:09:29Z
A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished.
Jesus
OMP:0005224
microbial_phenotype
A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished.
OMP:JG
delayed cell fusion
2016-06-20T23:10:02Z
An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control.
Jesus
OMP:0005225
microbial_phenotype
An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control.
OMP:JG
cell fusion during mating phenotype
2016-06-20T23:11:14Z
A cell fusion phenotype relating to the fusion of individual cells from each partner during mating.
APO:0000033
Jesus
OMP:0005226
conjugation with cellular fusion
microbial_phenotype
cell fusion
APO:0000033
GO:0000747
conjugation with cellular fusion
A cell fusion phenotype relating to the fusion of individual cells from each partner during mating.
OMP:JG
presence of cell fusion during mating
2016-06-20T23:15:38Z
A cell fusion during mating phenotype where individual cells from each partner fuse during mating.
Jesus
OMP:0005227
microbial_phenotype
A cell fusion during mating phenotype where individual cells from each partner fuse during mating.
OMP:JG
absence of cell fusion during mating
2016-06-20T23:16:33Z
A cell fusion during mating phenotype where cell fusion does not occur during mating.
Jesus
OMP:0005228
microbial_phenotype
A cell fusion during mating phenotype where cell fusion does not occur during mating.
OMP:JG
altered cell fusion during mating
2016-06-20T23:17:17Z
A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control.
Jesus
OMP:0005229
microbial_phenotype
A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control.
OMP:JG
increased cell fusion during mating
2016-06-20T23:17:51Z
An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating.
Jesus
OMP:0005230
microbial_phenotype
An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating.
OMP:JG
decreased cell fusion during mating
2016-06-20T23:21:08Z
An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating.
Jesus
OMP:0005231
microbial_phenotype
An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating.
OMP:JG
abolished cell fusion during mating
2016-06-20T23:21:44Z
A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished.
Jesus
OMP:0005232
microbial_phenotype
A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished.
OMP:JG
cell wall morphology phenotype
2016-06-20T23:33:27Z
A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
APO:0000053
Jesus
OMP:0005233
microbial_phenotype
A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
GO:0005618
OMP:JG
Cell wall morphology
APO:0000053
altered cell wall morphology
2016-06-20T23:36:20Z
A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control.
Jesus
OMP:0005234
microbial_phenotype
A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control.
OMP:JG
presence of cell wall
2016-06-20T23:37:37Z
A cell wall morphology phenotype where a cell or cells exhibit a cell wall.
Jesus
OMP:0005235
microbial_phenotype
A cell wall morphology phenotype where a cell or cells exhibit a cell wall.
OMP:JG
absence of cell wall
2016-06-20T23:38:17Z
A cell wall morphology phenotype where a cell or cells lack a cell wall.
Jesus
OMP:0005236
microbial_phenotype
A cell wall morphology phenotype where a cell or cells lack a cell wall.
OMP:JG
golgi apparatus phenotype
2016-06-20T23:41:43Z
A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport.
GO:0005794
Jesus
OMP:0005237
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
golgi apparatus
GO:0005794
A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport.
OMP:JG
golgi apparatus morphology phenotype
2016-06-20T23:43:17Z
A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack.
APO:0000243
Jesus
OMP:0005238
microbial_phenotype
Golgi morphology
APO:0000243
A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack.
OMP:JG
altered golgi morphology
2016-06-20T23:44:33Z
A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control.
Jesus
OMP:0005239
microbial_phenotype
A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control.
OMP:JG
presence of golgi apparatus
2016-06-20T23:45:22Z
A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus.
Jesus
OMP:0005240
microbial_phenotype
A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus.
OMP:JG
absence of golgi apparatus
2016-06-20T23:46:03Z
A golgi apparatus phenotype where a cell or cells lack a golgi apparatus.
Jesus
OMP:0005241
microbial_phenotype
A golgi apparatus phenotype where a cell or cells lack a golgi apparatus.
OMP:JG
delayed cell fusion during mating
2016-06-23T14:28:58Z
An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control.
Jesus
OMP:0005242
microbial_phenotype
An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control.
OMP:JG
filamentous growth phenotype
2016-06-23T14:38:44Z
APO:0000027
An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape.
GO:0030447
Jesus
OMP:0005243
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
development
APO:0000027
filamentous growth
GO:0030447
An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape.
GO:0030447
OMP:JG
altered filamentous growth
2016-06-23T14:41:10Z
A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control.
Jesus
OMP:0005244
microbial_phenotype
A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control.
OMP:JG
increased filamentous growth
2016-06-23T14:41:44Z
An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control.
Jesus
OMP:0005245
microbial_phenotype
An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control.
OMP:JG
decreased filamentous growth
2016-06-23T14:42:18Z
An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control.
Jesus
OMP:0005246
microbial_phenotype
An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control.
OMP:JG
abolished filamentous growth
2016-06-23T14:42:45Z
A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished.
Jesus
OMP:0005247
microbial_phenotype
A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished.
OMP:JG
presence of filamentous growth
2016-06-23T14:43:53Z
A filamentous growth phenotype where a microbe exhibits filamentous growth.
Jesus
OMP:0005248
microbial_phenotype
A filamentous growth phenotype where a microbe exhibits filamentous growth.
OMP:JG
absence of filamentous growth
2016-06-23T14:44:33Z
A filamentous growth phenotype where a microbe does not exhibit filamentous growth.
Jesus
OMP:0005249
microbial_phenotype
A filamentous growth phenotype where a microbe does not exhibit filamentous growth.
OMP:JG
aerobic population growth phenotype
2016-06-23T14:59:55Z
A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%).
Jesus
OMP:0005250
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%).
OMP:JG
absence of aerobic population growth
2016-06-23T15:00:52Z
An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%).
Jesus
OMP:0005251
microbial_phenotype
An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%).
OMP:JG
altered aerobic population growth
2016-06-23T15:01:40Z
A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control.
Jesus
OMP:0005252
microbial_phenotype
A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control.
OMP:JG
presence of aerobic population growth
2016-06-23T15:02:38Z
A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2).
Jesus
OMP:0005253
microbial_phenotype
A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2).
OMP:JG
microaerophilic population growth phenotype
2016-06-23T15:04:24Z
A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2.
Jesus
OMP:0005254
microbial_phenotype
A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2.
OMP:JG
presence of microaerophilic population growth
2016-06-23T15:05:26Z
A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions.
Jesus
OMP:0005255
microbial_phenotype
A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions.
OMP:JG
absence of microaerophilic growth
2016-06-23T15:06:52Z
A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment.
Jesus
OMP:0005256
microbial_phenotype
A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment.
JG:OMP
altered microaerophilic population growth
2016-06-23T15:07:30Z
A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control.
Jesus
OMP:0005257
microbial_phenotype
A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control.
OMP:JG
increased microaerophilic population growth rate
2016-06-23T15:07:51Z
An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
Jesus
OMP:0005258
microbial_phenotype
An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
OMP:JG
decreased microaerophilic population growth rate
2016-06-23T15:08:31Z
An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
Jesus
OMP:0005259
microbial_phenotype
An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
OMP:JG
transport phenotype
2016-06-27T14:17:43Z
A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
GO:0006810
Jesus
OMP:0005260
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
OMP:JG
endocytosis phenotype
2016-06-27T14:20:19Z
A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
APO:0000075
FYPO:0003886
GO:0006897
Jesus
OMP:0005261
microbial_phenotype
A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
OMP:JG
altered endocytosis
2016-06-27T14:23:04Z
An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control.
Jesus
OMP:0005262
microbial_phenotype
An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control.
OMP:JG
increased endocytosis
2016-06-27T14:23:59Z
An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
FYPO:0000425
Jesus
OMP:0005263
increased endocytosis during vegetative growth
microbial_phenotype
An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
OMP:JG
FYPO:0000425
increased endocytosis during vegetative growth
decreased endocytosis
2016-06-27T14:26:10Z
An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
FYPO:0000422
Jesus
OMP:0005264
decreased endocytosis during vegetative growth
microbial_phenotype
An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
OMP:JG
FYPO:0000422
decreased endocytosis during vegetative growth
abolished endocytosis
2016-06-27T14:29:14Z
A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished.
Jesus
OMP:0005265
abolished endocytosis during vegetative growth
microbial_phenotype
FYPO:0000421
abolished endocytosis during vegetative growth
A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished.
OMP:JG
delayed onset of endocytosis
2016-06-27T14:31:13Z
An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
Jesus
OMP:0005266
delayed onset of endocytosis during vegetative growth
microbial_phenotype
FYPO:0000424
delayed onset of endocytosis during vegetative growth
An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
OMP:JG
presence of endocytosis
2016-06-27T14:32:32Z
An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis.
Jesus
OMP:0005267
microbial_phenotype
An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis.
OMP:JG
absence of endocytosis
2016-06-27T14:33:03Z
An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis.
Jesus
OMP:0005268
microbial_phenotype
An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis.
OMP:JG
endomembrane system phenotype
2016-06-27T14:45:57Z
A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles.
GO:0012505
Jesus
OMP:0005269
PMID:19121819
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
endomembrane system
GO:0012505
A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles.
OMP:JG
endomembrane system morphology phenotype
2016-06-27T14:48:31Z
APO:0000303
An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system.
Jesus
OMP:0005270
microbial_phenotype
endomembrane system morphology
APO:0000303
An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system.
OMP:JG
altered endomembrane system morphology
2016-06-27T14:51:21Z
An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control.
Jesus
OMP:0005271
microbial_phenotype
An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control.
OMP:JG
presence of endomembrane system
2016-06-27T14:52:02Z
An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system.
Jesus
OMP:0005272
microbial_phenotype
An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system.
OMP:JG
absence of endomembrane system
2016-06-27T14:52:45Z
An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system.
Jesus
OMP:0005273
microbial_phenotype
An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system.
OMP:JG
organic heterocyclic compound resistance phenotype
2016-07-15T15:29:19Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element.
D-cycloserine resistance phenotype
Jesus
OMP:0005274
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
chloripromazine resistance phenotype
coumarin resistance phenotype
cycloheximide resistance phenotype
methotrexate resistance phenotype
microbial_phenotype
paraquat dichloride resistance phenotype
phenazine methosulfate resistance phenotype
pyocyanin resistance phenotype
radicicol resistance phenotype
rifampicin resistance phenotype
thiolactomycin resistance phenotype
thiolactone resistance phenotype
CHEBI:53396
phenazine methosulfate resistance phenotype
CHEBI:556075
radicicol resistance phenotype
CHEBI:28077
rifampicin resistance phenotype
CHEBI:40009
D-cycloserine resistance phenotype
CHEBI:28794
coumarin resistance phenotype
CHEBI:62220
pyocyanin resistance phenotype
CHEBI:34905
paraquat dichloride resistance phenotype
CHEBI:3647
chloripromazine resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element.
CHEBI:24532
OMP:JG
CHEBI:60317
thiolactone resistance phenotype
CID:445629
thiolactomycin resistance phenotype
CHEBI:27641
cycloheximide resistance phenotype
CHEBI:44185
methotrexate resistance phenotype
altered organic heterocyclic compound resistance
2016-07-15T15:33:41Z
An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control.
Jesus
OMP:0005275
microbial_phenotype
An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control.
OMP:JG
decreased resistance to organic heterocyclic compound
2016-07-15T15:34:14Z
An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control.
Jesus
OMP:0005276
microbial_phenotype
An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control.
OMP:JG
abolished resistance to organic heterocyclic compound
2016-07-15T15:34:45Z
A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished.
Jesus
OMP:0005277
microbial_phenotype
A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished.
OMP:JG
increased resistance to organic heterocyclic compound
2016-07-15T15:35:37Z
An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control.
Jesus
OMP:0005278
microbial_phenotype
An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control.
OMP:JG
not resistant to organic heterocyclic compound
2016-07-15T15:36:29Z
An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound.
Jesus
OMP:0005279
microbial_phenotype
An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound.
OMP:JG
resistant to organic heterocyclic compound
2016-07-15T15:37:34Z
An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds.
Jesus
OMP:0005280
cycloheximide
microbial_phenotype
An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds.
OMP:JG
CHEBI:27641
cycloheximide
colonization of host tissue phenotype
2016-08-16T01:05:03Z
A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue.
Jesus
OMP:0005281
microbial_phenotype
A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue.
OMP:JG
presence of colonization of host tissue
2016-08-16T01:06:46Z
A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host.
Jesus
OMP:0005282
microbial_phenotype
A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host.
OMP:JG
absence of colonization of host tissue
2016-08-16T01:07:20Z
A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host.
Jesus
OMP:0005283
microbial_phenotype
A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host.
OMP:JG
altered colonization of host tissue
2016-08-16T01:07:57Z
A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control.
Jesus
OMP:0005284
microbial_phenotype
A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control.
OMP:JG
increased colonization of host tissue
2016-08-16T01:08:32Z
An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control.
Jesus
OMP:0005285
microbial_phenotype
An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control.
OMP:JG
decreased colonization of host tissue
2016-08-16T01:09:04Z
An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control.
Jesus
OMP:0005286
microbial_phenotype
An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control.
OMP:JG
abolished colonization of host tissue
2016-08-16T01:09:35Z
A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished.
Jesus
OMP:0005287
microbial_phenotype
A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished.
OMP:JG
colonization of tissue in an immunocompromised host phenotype
2016-08-16T01:46:42Z
A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host.
Jesus
OMP:0005288
microbial_phenotype
A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host.
OMP:JG
presence of colonization of tissue in an immunocompromised host
2016-08-16T01:47:48Z
A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host.
Jesus
OMP:0005289
microbial_phenotype
A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host.
OMP:JG
absence of colonization of tissue in an immunocompromised host
2016-08-16T01:48:23Z
A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host.
Jesus
OMP:0005290
microbial_phenotype
A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host.
OMP:JG
altered colonization of tissue in an immunocompromised host
2016-08-16T01:49:00Z
A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control.
Jesus
OMP:0005291
microbial_phenotype
A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control.
OMP:JG
increased colonization of tissue in an immunocompromised host
2016-08-16T01:49:41Z
An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control.
Jesus
OMP:0005292
microbial_phenotype
An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control.
OMP:JG
decreased colonization of tissue in an immunocompromised host
2016-08-16T01:50:17Z
An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control.
Jesus
OMP:0005293
microbial_phenotype
An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control.
OMP:JG
abolished colonization of tissue in an immunocompromised host
2016-08-16T01:50:45Z
A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished.
Jesus
OMP:0005294
microbial_phenotype
A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished.
OMP:JG
colonization of mouse tissue
2016-08-29T15:32:17Z
A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue.
Jesus
OMP:0005295
microbial_phenotype
A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue.
OMP:JG
presence of colonization of mouse tissue
2016-08-29T15:34:02Z
A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue.
Jesus
OMP:0005296
microbial_phenotype
A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue.
OMP:JG
absence of colonization of mouse tissue
2016-08-29T15:34:47Z
A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue.
Jesus
OMP:0005297
microbial_phenotype
A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue.
OMP:JG
altered colonization of mouse tissue
2016-08-29T15:35:22Z
A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control.
Jesus
OMP:0005298
microbial_phenotype
A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control.
OMP:JG
increased colonization of mouse tissue
2016-08-29T15:36:17Z
An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control.
Jesus
OMP:0005299
microbial_phenotype
An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control.
OMP:JG
decreased colonization of mouse tissue
2016-08-29T15:36:52Z
An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control.
Jesus
OMP:0005300
microbial_phenotype
An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control.
OMP:JG
abolished colonization of mouse tissue
2016-08-29T15:37:32Z
A decreased colonization of mouse tissue phenotype where colonization is abolished.
Jesus
OMP:0005301
microbial_phenotype
A decreased colonization of mouse tissue phenotype where colonization is abolished.
OMP:JG
colonization of tissue in an immunocompromised mouse phenotype
2016-08-30T11:28:41Z
A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse.
Jesus
OMP:0005302
microbial_phenotype
A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse.
OMP:JG
presence of colonization of tissue in an immunocompromised mouse
2016-08-30T11:31:08Z
A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse.
Jesus
OMP:0005303
microbial_phenotype
A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse.
OMP:JG
absence of colonization of tissue in an immunocompromised mouse
2016-08-30T11:32:11Z
A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse.
Jesus
OMP:0005304
microbial_phenotype
A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse.
OMP:JG
altered colonization of tissue in an immunocompromised mouse
2016-08-30T11:33:51Z
A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
Jesus
OMP:0005305
microbial_phenotype
A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
OMP:JG
increased colonization of tissue in an immunocompromised mouse
2016-08-30T11:35:33Z
An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
Jesus
OMP:0005306
microbial_phenotype
An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
OMP:JG
decreased colonization of tissue in an immunocompromised mouse
2016-08-30T11:35:57Z
An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
Jesus
OMP:0005307
microbial_phenotype
An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
OMP:JG
abolished colonization of tissue in an immunocompromised mouse
2016-08-30T11:36:46Z
A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished.
Jesus
OMP:0005308
microbial_phenotype
A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished.
OMP:JG
colonization of rabbit tissue phenotype
2016-08-30T11:43:47Z
A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue.
Jesus
OMP:0005309
microbial_phenotype
A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue.
OMP:JG
presence of colonization of rabbit tissue
2016-08-30T11:44:31Z
A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue.
Jesus
OMP:0005310
microbial_phenotype
A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue.
OMP:JG
absence of colonization of rabbit tissue
2016-08-30T11:45:59Z
A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue.
Jesus
OMP:0005311
microbial_phenotype
A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue.
OMP:JG
altered colonization of rabbit tissue
2016-08-30T11:46:52Z
A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
Jesus
OMP:0005312
microbial_phenotype
A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
OMP:JG
increased colonization of rabbit tissue
2016-08-30T11:47:21Z
An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control.
Jesus
OMP:0005313
microbial_phenotype
An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control.
OMP:JG
decreased colonization of rabbit tissue
2016-08-30T11:47:50Z
An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
Jesus
OMP:0005314
microbial_phenotype
An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
OMP:JG
abolished colonization of rabbit tissue
2016-08-30T11:48:21Z
A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished.
Jesus
OMP:0005315
microbial_phenotype
A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished.
OMP:JG
colonization of tissue in an immunocompromised rabbit phenotype
2016-08-30T11:49:36Z
A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit.
Jesus
OMP:0005316
microbial_phenotype
A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit.
OMP:JG
presence of colonization of tissue in an immunocompromised rabbit
2016-08-30T11:50:36Z
A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit.
Jesus
OMP:0005317
microbial_phenotype
A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit.
OMP:JG
absence of colonization of tissue in an immunocompromised rabbit
2016-08-30T11:52:27Z
A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit.
Jesus
OMP:0005318
microbial_phenotype
A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit.
OMP:JG
altered colonization of tissue in an immunocompromised rabbit
2016-08-30T11:52:54Z
A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
Jesus
OMP:0005319
microbial_phenotype
A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
OMP:JG
increased colonization of tissue in an immunocompromised rabbit
2016-08-30T11:55:35Z
An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
Jesus
OMP:0005320
microbial_phenotype
An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
OMP:JG
decreased colonization of tissue in an immunocompromised rabbit
2016-08-30T11:56:07Z
An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
Jesus
OMP:0005321
microbial_phenotype
An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
OMP:JG
abolished colonization of tissue in an immunocompromised rabbit
2016-08-30T11:56:47Z
A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished.
Jesus
OMP:0005322
microbial_phenotype
A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished.
OMP:JG
altered cell motility by swarming
2016-09-19T14:01:13Z
A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control.
OMP:0005323
jguzman
microbial_phenotype
A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control.
OMP:JG
altered cell motility by swimming
2016-09-19T14:02:03Z
A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control.
OMP:0005324
jguzman
microbial_phenotype
A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control.
OMP:JG
agar invasion phenotype
2016-09-23T16:58:54Z
An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth.
Jesus
OMP:0005325
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth.
OMP:JG
presence of agar invasion
2016-09-23T17:03:49Z
An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth.
Jesus
OMP:0005326
invasive growth
microbial_phenotype
An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth.
OMP:JG
APO:0000028
invasive growth
absence of agar invasion
2016-09-23T17:05:49Z
An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth.
Jesus
OMP:0005327
microbial_phenotype
An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth.
OMP:JG
altered agar invasion
2016-09-23T17:07:22Z
An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control.
Jesus
OMP:0005328
microbial_phenotype
An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control.
OMP:JG
increased agar invasion
2016-09-23T17:07:59Z
An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control.
Jesus
OMP:0005329
microbial_phenotype
An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control.
OMP:JG
decreased agar invasion phenotype
2016-09-23T17:08:25Z
An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control.
Jesus
OMP:0005330
microbial_phenotype
An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control.
OMP:JG
abolished agar invasion
2016-09-23T17:08:54Z
A decreased agar invasion phenotype where the ability to invade agar media is abolished.
Jesus
OMP:0005331
microbial_phenotype
A decreased agar invasion phenotype where the ability to invade agar media is abolished.
OMP:JG
protein localization phenotype
2016-10-05T14:17:25Z
A cellular component phenotype relating to the localization or placement of proteins within a cell.
APO:0000209
Jesus
OMP:0005332
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cellular component phenotype relating to the localization or placement of proteins within a cell.
APO:0000209
OMP:JG
protein/peptide distribution
APO:0000209
altered protein localization
2016-10-05T14:18:53Z
A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control.
Jesus
OMP:0005333
microbial_phenotype
A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control.
OMP:JG
presence of protein localization
2016-10-05T14:19:21Z
A protein localization phenotype where an organism, cell, or cells exhibit protein localization.
Jesus
OMP:0005334
microbial_phenotype
A protein localization phenotype where an organism, cell, or cells exhibit protein localization.
OMP:JG
absence of protein localization
2016-10-05T14:19:51Z
A protein localization phenotype where an organism, cell, or cells lack protein localization.
Jesus
OMP:0005335
microbial_phenotype
A protein localization phenotype where an organism, cell, or cells lack protein localization.
OMP:JG
cell lysis phenotype
2016-10-31T13:27:46Z
A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised.
Jesus
OMP:0005336
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised.
FYPO:0002488
GO::0019835
OMP:JG
absence of cell lysis
2016-10-31T13:29:12Z
A cell lysis phenotype where cytolysis doesn't occur.
Jesus
OMP:0005337
microbial_phenotype
A cell lysis phenotype where cytolysis doesn't occur.
OMP:JG
presence of cell lysis
2016-10-31T13:30:04Z
A cell lysis phenotype where cytolysis occurs.
Jesus
OMP:0005338
microbial_phenotype
A cell lysis phenotype where cytolysis occurs.
OMP:JG
altered cell lysis
2016-10-31T13:30:56Z
A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control.
Jesus
OMP:0005339
microbial_phenotype
A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control.
OMP:JG
decreased cell lysis
2016-10-31T13:31:44Z
An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control.
Jesus
OMP:0005340
microbial_phenotype
An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control.
OMP:JG
abolished cell lysis
2016-10-31T13:32:41Z
A decreased cell lysis phenotype where cytolysis is abolished.
Jesus
OMP:0005341
microbial_phenotype
A decreased cell lysis phenotype where cytolysis is abolished.
OMP:JG
increased cell lysis
2016-10-31T13:33:49Z
An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control.
Jesus
OMP:0005342
microbial_phenotype
An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control.
OMP:JG
organic aromatic compound resistance phenotype
2016-10-31T13:40:40Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound.
CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype
Jesus
OMP:0005343
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
procaine resistance phenotype
propidium iodide resistance phenotype
sulfamethizole resistance phenotype
triclosan resistance phenotype
CHEBI:51240
propidium iodide resistance phenotype
CHEBI:164200
triclosan resistance phenotype
CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype
CHEBI:3259
CHEBI:8430
procaine resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound.
OMP:JG
CHEBI:9331
sulfamethizole resistance phenotype
altered organic aromatic compound resistance
2016-10-31T13:45:41Z
An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control.
Jesus
OMP:0005344
microbial_phenotype
An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control.
OMP:JG
decreased resistance to organic aromatic compounds
2016-10-31T13:46:37Z
An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control.
Jesus
OMP:0005345
microbial_phenotype
An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control.
OMP:JG
abolished resistance to organic aromatic compounds
2016-10-31T13:47:39Z
A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished.
Jesus
OMP:0005346
microbial_phenotype
A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished.
OMP:JG
increased resistance to organic aromatic compounds
2016-10-31T13:48:38Z
An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control.
Jesus
OMP:0005347
microbial_phenotype
An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control.
OMP:JG
not resistant to organic aromatic compounds
2016-10-31T13:49:36Z
An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds.
Jesus
OMP:0005348
microbial_phenotype
An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds.
OMP:JG
resistant to organic aromatic compounds
2016-10-31T13:50:26Z
An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds.
Jesus
OMP:0005349
microbial_phenotype
An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds.
OMP:JG
presence of mating
2016-11-21T13:08:52Z
A mating phenotype where an organism uses the process of conjugation for sexual reproduction.
Jesus
OMP:0005350
microbial_phenotype
A mating phenotype where an organism uses the process of conjugation for sexual reproduction.
OMP:JG
absence of mating
2016-11-21T13:10:46Z
A mating phenotype where an organism does not use the process of conjugation for sexual reproduction.
Jesus
OMP:0005351
microbial_phenotype
A mating phenotype where an organism does not use the process of conjugation for sexual reproduction.
OMP:JG
altered mating
2016-11-21T13:11:47Z
A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control.
Jesus
OMP:0005352
microbial_phenotype
A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control.
OMP:JG
increased mating
2016-11-21T13:13:40Z
An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control.
Jesus
OMP:0005353
microbial_phenotype
An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control.
OMP:JG
decreased mating
2016-11-21T13:14:33Z
An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control.
Jesus
OMP:0005354
microbial_phenotype
An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control.
OMP:JG
abolished mating
2016-11-21T13:15:43Z
A decreased mating phenotype where sexual reproduction by conjugation is abolished.
Jesus
OMP:0005355
microbial_phenotype
A decreased mating phenotype where sexual reproduction by conjugation is abolished.
OMP:JG
mating efficiency phenotype
2016-11-21T13:27:01Z
A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate.
Jesus
OMP:0005356
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Depending on the assay used, a change in measured mating efficiency may reflect a change in conjugation frequency (see OMP:0007412 mating phenotype and its descendants) and/or a change in some other biological process such as sexual sporulation (see OMP:0007045 and its descendants). For this reason mating efficiency phenotype is not a child of mating phenotype, but instead a child of sexual reproduction phenotype (OMP:0007406).
microbial_phenotype
A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate.
FYPO:0001147
OMP:JG
altered mating efficiency
2016-11-21T13:29:32Z
A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control.
Jesus
OMP:0005357
microbial_phenotype
A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control.
OMP:JG
increased mating efficiency
2016-11-21T13:30:39Z
A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control.
Jesus
OMP:0005358
microbial_phenotype
A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control.
OMP:JG
decreased mating efficiency
2016-11-21T13:32:39Z
A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control.
Jesus
OMP:0005359
microbial_phenotype
A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control.
OMP:JG
abolished mating efficiency
2016-11-21T13:33:33Z
A decreased mating efficiency phenotype where mating is abolished.
Jesus
OMP:0005360
microbial_phenotype
A decreased mating efficiency phenotype where mating is abolished.
OMP:JG
osmotaxis phenotype
2016-12-20T12:48:52Z
A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se.
Jesus
OMP:0005361
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se.
OMP:JG
PMID:3059348
presence of osmotaxis
2016-12-20T12:51:45Z
An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient.
Jesus
OMP:0005362
microbial_phenotype
An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient.
OMP:JG
absence of osmotaxis
2016-12-20T12:52:21Z
An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient.
Jesus
OMP:0005363
microbial_phenotype
An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient.
OMP:JG
presence of positive osmotaxis
2016-12-20T12:53:34Z
A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration.
Jesus
OMP:0005364
microbial_phenotype
A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration.
OMP:JG
presence of negative osmotaxis
2016-12-20T12:54:30Z
A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration.
Jesus
OMP:0005365
microbial_phenotype
A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration.
OMP:JG
abolished osmotaxis
2016-12-20T12:59:07Z
A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished.
Jesus
OMP:0005366
microbial_phenotype
A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished.
OMP:JG
absence of negative osmotaxis
2016-12-20T13:00:12Z
An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis.
Jesus
OMP:0005367
microbial_phenotype
An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis.
OMP:JG
abolished negative osmotaxis
2016-12-20T13:02:31Z
A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished.
Jesus
OMP:0005368
microbial_phenotype
A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished.
OMP:JG
absence of positive osmotaxis
2016-12-20T13:03:16Z
A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis.
Jesus
OMP:0005369
microbial_phenotype
A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis.
OMP:JG
abolished positive osmotaxis
2016-12-20T13:04:08Z
A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished.
Jesus
OMP:0005370
microbial_phenotype
A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished.
OMP:JG
altered osmotaxis
2016-12-20T13:05:17Z
An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control.
Jesus
OMP:0005371
microbial_phenotype
An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control.
OMP:JG
decreased osmotaxis
2016-12-20T13:06:09Z
An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control.
Jesus
OMP:0005372
microbial_phenotype
An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control.
OMP:JG
sporulation frequency phenotype
2016-12-20T13:17:56Z
A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions.
Jesus
OMP:0005373
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions.
OMP:JG
increased osmotaxis
2016-12-20T13:08:00Z
An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control.
Jesus
OMP:0005374
microbial_phenotype
An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control.
OMP:JG
increased negative osmotaxis
2016-12-20T13:08:34Z
An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control.
Jesus
OMP:0005375
microbial_phenotype
An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control.
OMP:JG
increased positive osmotaxis
2016-12-20T13:09:07Z
An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control.
Jesus
OMP:0005376
microbial_phenotype
An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control.
OMP:JG
sexual sporulation frequency
2016-12-20T13:23:48Z
A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions.
Jesus
OMP:0005377
microbial_phenotype
sporulation efficiency
APO:0000044
sporulation efficiency
A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions.
APO:0000044
OMP:JG
altered sexual sporulation frequency
2016-12-20T13:27:44Z
A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control.
Jesus
OMP:0005378
altered sexual sporulation efficiency
microbial_phenotype
A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control.
OMP:JG
increased sexual sporulation frequency
2016-12-20T13:32:18Z
An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control.
Jesus
OMP:0005379
increased sexual sporulation efficiency
microbial_phenotype
An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control.
OMP:JG
decreased sexual sporulation frequency
2016-12-20T13:33:55Z
An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control.
Jesus
OMP:0005380
decreased sexual sporulation efficiency
microbial_phenotype
An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control.
OMP:JG
abolished sexual sporulation frequency
2016-12-20T13:35:03Z
A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection.
Jesus
OMP:0005381
abolished sexual sporulation efficiency
microbial_phenotype
A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection.
OMP:JG
tail morphology phenotype
2017-11-03T21:07:19Z
A virion morphology phenotype that is referring to the form and structure of tails on viral particles.
MiLaptop
OMP:0005382
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A virion morphology phenotype that is referring to the form and structure of tails on viral particles.
OMP:dr
presence of tail
2017-11-03T21:10:23Z
A tail morphology phenotype where the virus has a tail present.
MiLaptop
OMP:0005383
microbial_phenotype
presence of short tail
2017-11-03T21:15:15Z
A tail length phenotype where the maximum length of the tail is 17 nm.
MiLaptop
OMP:0005384
microbial_phenotype
presence of normal tail
2017-11-03T21:17:21Z
A tail length phenotype ranging from 18 nm to 109 nm.
MiLaptop
OMP:0005385
microbial_phenotype
capsid morphology phenotype
2017-11-03T21:01:58Z
A virion morphology phenotype related to the form and structure of the capsid of the virion.
MiLaptop
OMP:0005386
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
presence of long tail
2017-11-03T21:19:23Z
A tail length phenotype ranging from 110 nm to 300 nm.
MiLaptop
OMP:0005387
microbial_phenotype
presence of contractile tail
2017-11-03T21:20:42Z
A phage tail phenotype where the tail contracts to inject its DNA into the host.
MiLaptop
OMP:0005388
microbial_phenotype
presence of non-contractile tail
2017-11-03T21:33:18Z
A phage tail phenotype where the tail does not contract to inject its DNA into the host.
MiLaptop
OMP:0005389
microbial_phenotype
presence of a single tail
2017-11-03T21:34:28Z
A phage tail phenotype where only one tail per virion is present.
MiLaptop
OMP:0005390
microbial_phenotype
presence of multiple tails
2017-11-03T21:35:33Z
A phage tail phenotype where more than one tail per virion is present.
MiLaptop
OMP:0005391
microbial_phenotype
absence of tail
2017-11-03T21:36:16Z
A tail morphology phenotype where the virus has no tail.
MiLaptop
OMP:0005392
microbial_phenotype
pseudo tail morphology phenotype
2017-11-03T21:39:58Z
A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion.
MiLaptop
OMP:0005393
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion.
OMP:dr
polyhedral shape
2017-11-03T21:42:47Z
A capsid morphology phenotype where the capsid is shaped like a polyhedron which is a solid formed by plane faces.
MiLaptop
OMP:0005394
microbial_phenotype
icosahedral capsid shape
2017-11-03T21:45:08Z
A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces.
MiLaptop
OMP:0005395
microbial_phenotype
A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces.
OMP:dr
isometric capsid
2017-11-03T21:52:04Z
A capsid morphology phenotype where the capsid is shaped isometrically which is a shape that is characterized by equality of measure.
MiLaptop
OMP:0005396
microbial_phenotype
octahedral capsid
2017-11-03T21:53:27Z
A capsid morphology phenotype where the capsid is shaped like an octahedron which is a polyhedron with 8 plane faces.
MiLaptop
OMP:0005397
microbial_phenotype
dodecahedral capsid shape
2017-11-03T21:55:20Z
A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces.
MiLaptop
OMP:0005398
microbial_phenotype
A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces.
OMP:dr
secondary metabolite production phenotype
2015-06-09T15:06:53Z
A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction.
OMP:0006000
microbial_phenotype
tkveton
A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction.
APO:0000292
OMP:TCK
altered chromosome segregation
2014-07-24T14:14:37Z
A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control.
OMP:0006001
jonathanherrera
microbial_phenotype
A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control.
OMP:JCH
altered homologous recombination
2014-07-24T15:04:15Z
A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control.
OMP:0006002
jonathanherrera
microbial_phenotype
A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control.
OMP:JCH
altered gene silencing
2014-07-24T15:10:50Z
A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control.
OMP:0006003
jonathanherrera
microbial_phenotype
A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control.
OMP:JCH
increased budding
2014-03-26T21:33:14Z
An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control.
OMP:0006004
increased budding index
jonathanherrera
microbial_phenotype
An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control.
OMP:WAM
altered site-specific recombination
2014-07-24T15:21:56Z
A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control.
OMP:0006005
jonathanherrera
microbial_phenotype
A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control.
OMP:JCH
decreased budding
2014-03-26T21:33:14Z
An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control.
OMP:0006006
decreased budding index
jonathanherrera
microbial_phenotype
An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control.
OMP:WAM
altered heterocyst formation
2014-07-24T16:24:44Z
A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control.
OMP:0006007
jonathanherrera
microbial_phenotype
A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control.
OMP:JCH
photosynthesis phenotype
2014-04-01T14:18:12Z
A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules.
OMP:0006008
jonathanherrera
microbial_phenotype
A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules.
OMP:JCH
altered myxospore formation
2014-07-24T16:26:38Z
A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control.
OMP:0006009
jonathanherrera
microbial_phenotype
A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control.
OMP:JCH
altered pilus phenotype
2014-07-24T16:28:24Z
A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control.
OMP:0006010
jonathanherrera
microbial_phenotype
A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control.
OMP:JCH
lantibiotic resistance phenotype
2014-04-30T22:47:51Z
A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid.
OMP:0006011
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
jonathanherrera
lantibiotic sensitivity phenotype
microbial_phenotype
A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid.
CHEBI:71644
OMP:WAM
decreased resistance to lantibiotic
2014-04-30T22:48:59Z
A lantibiotic resistance phenotype where resistance is decreased relative to a designated control.
OMP:0006012
increased sensitivity to lantibiotic
jonathanherrera
microbial_phenotype
A lantibiotic resistance phenotype where resistance is decreased relative to a designated control.
OMP:WAM
altered transposable element transposition phenotype
2014-07-24T16:30:53Z
A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control.
OMP:0006013
jonathanherrera
microbial_phenotype
A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control.
OMP:JCH
increased resistance to lantibiotic
2014-04-30T22:48:59Z
A lantibiotic resistance phenotype where resistance is increased relative to a designated control.
OMP:0006014
decreased sensitivity to lantibiotic
jonathanherrera
microbial_phenotype
A lantibiotic resistance phenotype where resistance is increased relative to a designated control.
OMP:WAM
presence of transposable element transposition
2014-07-24T16:34:28Z
A transposable element transposition phenotype where a cell or cells have transposition of transposable elements.
OMP:0006015
jonathanherrera
microbial_phenotype
A transposable element transposition phenotype where a cell or cells have transposition of transposable elements.
OMP:WAM
absence of transposable element transposition
2014-07-24T16:34:28Z
A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements.
OMP:0006016
jonathanherrera
microbial_phenotype
A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements.
OMP:WAM
altered aminoglycoside resistance
2014-07-24T17:04:53Z
An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control.
OMP:0006017
jonathanherrera
microbial_phenotype
An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control.
OMP:JCH
altered aminopyrimidine resistance
2014-07-24T17:13:02Z
An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control.
OMP:0006018
jonathanherrera
microbial_phenotype
An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control.
OMP:JCH
altered azole resistance
2014-07-24T17:20:23Z
An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control.
OMP:0006019
jonathanherrera
microbial_phenotype
An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control.
OMp:JCH
altered bacteriocin resistance
2014-07-24T17:21:28Z
A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control.
OMP:0006020
jonathanherrera
microbial_phenotype
A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control.
OMP:JCH
altered beta-lactam resistance
2014-07-24T17:26:03Z
A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control.
OMP:0006021
jonathanherrera
microbial_phenotype
A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control.
OMP:JCH
nutrient utilization phenotype
2013-09-10T14:40:06Z
A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture.
OMP:0006022
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
jonathanherrera
microbial_phenotype
A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture.
ISBN:9780073402406
carbon source utilization phenotype
2013-09-10T17:51:21Z
A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon.
N-acetyl glucosamine
OMP:0006023
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
acetate
glucosamine
glucose
glycerol
jonathanherrera
maltose
microbial_phenotype
succinate
A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon.
OMP:DAS
presence of organic carbon source utilization
2013-09-10T18:39:02Z
A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source.
OMP:0006024
heterotrophy
jonathanherrera
microbial_phenotype
A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source.
ISBN:9780073402406
OMP:DAS
altered chloramphenicol resistance
2014-07-24T17:39:51Z
A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control.
OMP:0006025
jonathanherrera
microbial_phenotype
A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control.
OMP:JCH
nitrogen source utilization phenotype
2013-09-10T17:51:21Z
A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen.
NH4Cl (ammonia)
OMP:0006026
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
jonathanherrera
microbial_phenotype
A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen.
OMP:DAS
bacteriocin resistance phenotype
2013-10-04T16:57:43Z
An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species.
CHEBI:48081
OMP:0006027
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
bacteriocin sensitivity phenotype
colicins resistance phenotype
fusidic acid resistance phenotype
iantibiotic resistance phenotype
jonathanherrera
microbial_phenotype
microcin resistance phenotype
nisin resistance phenotype
subtilin resistance phenotype
type A lantibiotic resistance phenotype
type B lantibiotic resistance phenotype
CHEBI:64627
microcin resistance phenotype
CHEBI:71644
iantibiotic resistance phenotype
ChEBI:71629
nisin resistance phenotype
CHEBI:71647
type B lantibiotic resistance phenotype
CHEBI:71645
type A lantibiotic resistance phenotype
GO:0015468
colicins resistance phenotype
Bactibase:BAC045
subtilin resistance phenotype
CHEBI:29013
fusidic acid resistance phenotype
bacteriocin
CHEBI:48081
An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species.
CHEBI:48081
OMP:JCH
azole antimicrobial agent resistance phenotype
2013-10-10T19:15:32Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen.
CHEBI:68452
OMP:0006028
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen. A mancude ring has the maximum number of noncumulative double bonds, e.g. benzene, indole.
azole sensitivity phenotype
benomyl resistance phenotype
fluconazole resistance phenotype
itraconazole resistance phenotype
jonathanherrera
ketoconazole resistance phenotype
miconazole resistance phenotype
microbial_phenotype
posaconazole resistance phenotype
thiabendazole resistance phenotype
triazole resistance phenotype
voriconazole resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen.
CHEBI:68452
OMP:DAS
CHEBI:47519
ketoconazole resistance phenotype
azole
CHEBI:68452
CHEBI:45979
thiabendazole resistance phenotype
CHEBI:38597
triazole resistance phenotype
CHEBI:6923
miconazole resistance phenotype
CHEBI:6076
itraconazole resistance phenotype
CHEBI:3015
benomyl resistance phenotype
CHEBI:46081
fluconazole resistance phenotype
CHEBI:64355
posaconazole resistance phenotype
CHEBI:10023
voriconazole resistance phenotype
quinolone resistance phenotype
2013-10-10T19:15:32Z
An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure.
CHEBI:23765
OMP:0006029
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Quinolones are a class of quinolines, which are aromatic heterocyclic compounds that contain a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring.
ciprofloxacin resistance phenotype
dibucaine resistance phenotype
doxorubicin resistance phenotype
jonathanherrera
levofloxacin resistance phenotype
microbial_phenotype
nalidixic acid resistance phenotype
norfloxacin resistance phenotype
quinolines
quinolone sensitivity phenotype
streptonigrin
CHEBI:9287
streptonigrin
CHEBI:63598
levofloxacin resistance phenotype
CHEBI:100147
nalidixic acid resistance phenotype
quinolone
CHEBI:23765
An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure.
CHEBI:23765
OMP:JCH
CHEBI:28748
doxorubicin resistance phenotype
CHEBI:100241
ciprofloxacin resistance phenotype
CHEBI:100246
norfloxacin resistance phenotype
CHEBI:26513
quinolines
CHEBI:247956
dibucaine resistance phenotype
dinitrogen utilization phenotype
2013-09-10T17:54:07Z
A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen.
OMP:0006030
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
diatomic nitrogen utilization phenotype
jonathanherrera
microbial_phenotype
nitrogen fixation phenotype
A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen.
OMP:DAS
altered resistance to macrolide
2014-07-24T17:40:33Z
A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control.
OMP:0006031
jonathanherrera
microbial_phenotype
A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control.
OMP:JCH
altered pteridine resistance
2014-07-24T17:42:30Z
A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control.
OMP:0006032
jonathanherrera
microbial_phenotype
A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control.
OMP:JCH
altered lifespan phenotype
2014-07-24T17:52:43Z
An lifespan phenotype that is altered relative to a designated control.
OMP:0006033
jonathanherrera
microbial_phenotype
An lifespan phenotype that is altered relative to a designated control.
OMP:JCH
altered stress-induced mutagenesis
2014-07-24T17:57:37Z
A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control.
OMP:0006034
jonathanherrera
microbial_phenotype
A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control.
OMP:JCH
altered budding
2014-07-24T18:10:38Z
A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control.
OMP:0006035
jonathanherrera
microbial_phenotype
A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control.
OMP:JCH
decreased resistance to macrolide
2013-10-11T17:35:04Z
A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control.
OMP:0006036
increased sensitivity to macrolide
jonathanherrera
microbial_phenotype
A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control.
OMP:JCH
increased resistance to macrolide
2013-10-11T17:35:04Z
A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control.
OMP:0006037
decreased sensitivity to macrolide
jonathanherrera
microbial_phenotype
A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control.
OMP:JCH
not resistant to macrolide
2013-10-11T17:35:04Z
A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds.
OMP:0006038
jonathanherrera
microbial_phenotype
sensitivity to macrolide
A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds.
OMP:JCH
resistant to macrolide
2013-10-11T17:35:04Z
A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds.
OMP:0006039
jonathanherrera
microbial_phenotype
A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds.
OMP:JCH
decreased resistance to quinolone
2013-10-11T17:38:00Z
A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control.
OMP:0006040
increased sensitivity to quinoline
jonathanherrera
microbial_phenotype
A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control.
OMP:JCH
increased resistance to quinolone
2013-10-11T17:38:00Z
A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control.
OMP:0006041
decreased sensitivity to quinoline
jonathanherrera
microbial_phenotype
A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control.
OMP:JCH
not resistant to quinolone
2013-10-11T17:38:00Z
A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds.
OMP:0006042
jonathanherrera
microbial_phenotype
sensitivity to quinolone
A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds.
OMp:JCH
resistant to quinolone
2013-10-11T17:38:00Z
A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds.
OMP:0006043
jonathanherrera
microbial_phenotype
A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds.
OMP:JCH
decreased resistance to beta-lactam
2013-10-11T17:40:34Z
A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control.
OMP:0006044
increased sensitivity to beta-lactam
jonathanherrera
microbial_phenotype
A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control.
OMP:JCH
increased resistance to beta-lactam compound
2013-10-11T17:40:34Z
A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control.
OMP:0006045
decreased sensitivity to beta-lactam
jonathanherrera
microbial_phenotype
A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control.
OMP:JCH
not resistant to beta-lactam
2013-10-11T17:40:34Z
A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds.
OMP:0006046
beta-lactam sensitivity
jonathanherrera
microbial_phenotype
A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds.
OMP:JCH
resistant to beta-lactam
2013-10-11T17:40:34Z
An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds.
OMP:0006047
jonathanherrera
microbial_phenotype
An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds.
OMP:JCH
decreased resistance to bacteriocin
2013-10-11T17:44:39Z
An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control.
OMP:0006048
increased sensitivity to bacteriocin
jonathanherrera
microbial_phenotype
An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control.
OMP:JCH
increased resistance to bacteriocin
2013-10-11T17:44:39Z
A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control.
OMP:0006049
decreased sensitivity to a bacteriocin
jonathanherrera
microbial_phenotype
A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control.
OMP:JCH
not resistant to bacteriocin
2013-10-11T17:44:39Z
A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins.
OMP:0006050
bacteriocin sensitivity
jonathanherrera
microbial_phenotype
A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins.
OMP:JCH
resistant to bacteriocin
2013-10-11T17:44:39Z
A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins.
OMP:0006051
jonathanherrera
microbial_phenotype
A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins.
OMP:JCH
decreased resistance to azole
2013-10-11T17:45:44Z
An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control.
OMP:0006052
increased sensitivity to azole
jonathanherrera
microbial_phenotype
An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control.
OMP:DAS
increased resistance to azole compound
2013-10-11T17:45:44Z
An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control.
OMP:0006053
decreased sensitivity to azole
jonathanherrera
microbial_phenotype
An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control.
OMP:DAS
not resistant to azole
2013-10-11T17:45:44Z
An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds.
OMP:0006054
azole sensitivity
jonathanherrera
microbial_phenotype
An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds.
OMP:DAS
resistant to azole
2013-10-11T17:45:44Z
An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds.
OMP:0006055
jonathanherrera
microbial_phenotype
An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds.
OMP:DAS
aminoglycoside antimicrobial agent resistance phenotype
2013-10-22T13:29:22Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars.
CHEBI:47779
OMP:0006056
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
amikacin resistance phenotype
aminoglycoside sensitivity phenotype
gentamicin resistance phenotype
hygromycin B resistance phenotype
jonathanherrera
kanamycin resistance phenotype
microbial_phenotype
neomycin resistance phenotype
spectinomycin resistance phenotype
streptomycin resistance phenotype
tobramycin resistance phenotype
CHEBI:16976
hygromycin B resistance phenotype
CHEBI:5312
gentamicin resistance phenotype
CHEBI:28864
tobramycin resistance phenotype
CHEBI:2673
amikacin resistance phenotype
CHEBI:32158
spectinomycin resistance phenotype
CHEBI:17076
streptomycin resistance phenotype
CHEBI:6104
kanamycin resistance phenotype
CHEBI:7508
neomycin resistance phenotype
aminoglycoside
CHEBI:47779
An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars.
CHEBI:47779
OMP:JCH
decreased resistance to aminoglycoside
2013-10-22T19:24:20Z
An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control.
OMP:0006057
increased sensitivity to aminoglycoside
jonathanherrera
microbial_phenotype
An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control.
OMP:JCH
increased resistance to aminoglycoside
2013-10-22T19:24:20Z
An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control.
OMP:0006058
decreased sensitivity to aminoglycoside
jonathanherrera
microbial_phenotype
An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control.
OMP:JCH
not resistant to aminoglycoside
2013-10-22T19:24:20Z
An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides.
OMP:0006059
aminoglycoside sensitivity
jonathanherrera
microbial_phenotype
An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides.
OMP:JCH
resistant to aminoglycoside
2013-10-22T19:24:20Z
An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds.
OMP:0006060
jonathanherrera
microbial_phenotype
An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds.
OMP:JCH
decreased resistance to tetracycline
2013-10-23T19:27:35Z
A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control.
OMP:0006061
increased sensitivity to tetracycline
jonathanherrera
microbial_phenotype
A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control.
OMP:JCH
tetracycline resistance phenotype
2013-10-23T17:21:25Z
An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton.
CHEBI:27902
OMP:0006062
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
bacteriostatic resistance phenotype
chlortetracycline resistance phenotype
doxycycline resistance phenotype
jonathanherrera
microbial_phenotype
minocycline resistance phenotype
oxytetracycline resistance phenotype
tetracycline sensitivity phenotype
CHEBI:27701
oxytetracycline resistance phenotype
CHEBI:50694
minocycline resistance phenotype
CHEBI:50845
doxycycline resistance phenotype
An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton.
CHEBI:27902
OMP:JCH
increased resistance to tetracycline
2013-10-23T19:27:35Z
A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control.
OMP:0006063
decreased sensitivity to tetracycline
jonathanherrera
microbial_phenotype
A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control.
OMP:JCH
not resistant to tetracycline
2013-10-23T19:27:35Z
A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines.
OMP:0006064
jonathanherrera
microbial_phenotype
sensitivity to tetracycline
A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines.
OMP:JCH
resistant to tetracycline
2013-10-23T19:27:35Z
A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds.
OMP:0006065
jonathanherrera
microbial_phenotype
A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds.
OMP:JCH
chloramphenicol resistance phenotype
2013-10-24T12:57:25Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions.
CHEBI:17698
OMP:0006066
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
chloramphenicol sensitivity phenotype
jonathanherrera
microbial_phenotype
chloramphenicol
CHEBI:17698
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions.
CHEBI:17698
OMP:JCH
decreased resistance to chloramphenicol
2013-10-24T19:41:11Z
A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control.
OMP:0006067
increased sensitivity to chloramphenicol
jonathanherrera
microbial_phenotype
A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control.
OMP:JCH
increased resistance to chloramphenicol
2013-10-24T19:41:11Z
A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control.
OMP:0006068
decreased sensitivity to chloramphenicol
jonathanherrera
microbial_phenotype
A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control.
OMP:JCH
not resistant to chloramphenicol
2013-10-24T19:41:11Z
A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol.
OMP:0006069
chloramphenicol sensitivity
jonathanherrera
microbial_phenotype
A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol.
OMP:JCH
resistant to chloramphenicol
2013-10-24T19:41:11Z
A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol.
OMP:0006070
jonathanherrera
microbial_phenotype
A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol.
OMP:JCH
altered mutation frequency
2014-07-24T18:18:59Z
A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control.
OMP:0006071
jonathanherrera
microbial_phenotype
A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control.
OMP:JCH
not resistant to lantibiotic
2014-04-30T22:48:59Z
A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics.
OMP:0006072
jonathanherrera
microbial_phenotype
sensitive to lantibiotic
A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics.
OMP:WAM
resistant to lantibiotic
2014-04-30T22:48:59Z
A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds.
OMP:0006073
jonathanherrera
microbial_phenotype
A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds.
OMP:WAM
increased resistance to pteridine
2014-05-12T13:04:39Z
A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control.
OMP:0006074
decreased sensitivity to pteridine
jonathanherrera
microbial_phenotype
A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control.
CHEBI:27601
OMP:DAS
not resistant to pteridine
2014-05-12T13:04:40Z
A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds.
OMP:0006075
jonathanherrera
microbial_phenotype
sensitivity to pteridine
A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds.
CHEBI:27601
OMP:JCH
resistant to pteridine
2014-05-12T13:04:40Z
A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds.
OMP:0006076
jonathanherrera
microbial_phenotype
A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds.
CHEBI:27601
OMP:JCH
altered catalase test result
2014-07-15T14:55:03Z
A catalase test phenotype where catalase activity is altered relative to a designated control.
OMP:0006077
jonathanherrera
microbial_phenotype
A catalase test phenotype where catalase activity is altered relative to a designated control.
OMP:JCH
decarboxylase negative
2014-07-15T19:59:58Z
A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity.
OMP:0006078
jonathanherrera
microbial_phenotype
A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity.
OMP:JCH
altered decarboxylase test result
2014-07-15T19:59:58Z
A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control.
OMP:0006079
jonathanherrera
microbial_phenotype
A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control.
OMP:JCH
decarboxylase positive
2014-07-15T19:59:58Z
A decarboxylase test phenotype where an organism exhibits decarboxylase activity.
OMP:0006080
jonathanherrera
microbial_phenotype
A decarboxylase test phenotype where an organism exhibits decarboxylase activity.
OMP:JCH
increased decarboxylase activity
2014-07-15T20:00:41Z
An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control.
OMP:0006081
jonathanherrera
microbial_phenotype
An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control.
OMP:JCH
decreased decarboxylase activity
2014-07-15T20:00:41Z
An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control.
OMP:0006082
jonathanherrera
microbial_phenotype
An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control.
OMP:JCH
altered oxidase test result
2014-07-15T20:06:25Z
An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control.
OMP:0006083
jonathanherrera
microbial_phenotype
An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control.
OMP:JCH
oxidase negative
2014-07-15T20:06:25Z
An oxidase test phenotype where an organism doesn't exhibit oxidase activity.
OMP:0006084
jonathanherrera
microbial_phenotype
oxidase deficient
An oxidase test phenotype where an organism doesn't exhibit oxidase activity.
OMP:JCH
oxidase positive
2014-07-15T20:06:25Z
An oxidase test phenotype where an organism exhibits oxidase activity.
OMP:0006085
jonathanherrera
microbial_phenotype
An oxidase test phenotype where an organism exhibits oxidase activity.
OMP:JCH
increased oxidase activity
2014-07-15T20:06:48Z
An altered oxidase test phenotype where oxidase activity is increased relative to a designated control.
OMP:0006086
jonathanherrera
microbial_phenotype
An altered oxidase test phenotype where oxidase activity is increased relative to a designated control.
OMP:JCH
decreased oxidase activity
2014-07-15T20:06:48Z
An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control.
OMP:0006087
jonathanherrera
microbial_phenotype
An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control.
OMP:JCH
altered urease test result
2014-07-15T20:07:31Z
A urease test phenotype where urease activity is altered relative to a designated control.
OMP:0006088
jonathanherrera
microbial_phenotype
A urease test phenotype where urease activity is altered relative to a designated control.
OMP:JCH
urease positive
2014-07-15T20:07:31Z
A urease test phenotype where an organism exhibits urease activity.
OMP:0006089
jonathanherrera
microbial_phenotype
A urease test phenotype where an organism exhibits urease activity.
OMP:JCH
urease negative
2014-07-15T20:07:31Z
A urease test phenotype where an organism doesn't exhibit urease activity.
OMP:0006090
jonathanherrera
microbial_phenotype
urease deficient
A urease test phenotype where an organism doesn't exhibit urease activity.
OMP:JCH
increased urease activity
2014-07-15T20:07:54Z
An altered urease activity phenotype where urease activity is increased relative to a designated control.
OMP:0006091
jonathanherrera
microbial_phenotype
An altered urease activity phenotype where urease activity is increased relative to a designated control.
OMP:JCH
decreased urease activity
2014-07-15T20:07:54Z
An altered urease activity phenotype where there urease activity is decreased relative to a designated control.
OMP:0006092
jonathanherrera
microbial_phenotype
An altered urease activity phenotype where there urease activity is decreased relative to a designated control.
OMP:JCH
altered quorum sensing phenotype
2014-07-24T18:43:39Z
A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control.
OMP:0006093
jonathanherrera
microbial_phenotype
A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control.
OMP:JCH
abolished decarboxylase activity
2014-07-24T20:05:39Z
A decreased decarboxylase activity phenotype where decarboxylase activity is abolished.
OMP:0006094
jonathanherrera
microbial_phenotype
A decreased decarboxylase activity phenotype where decarboxylase activity is abolished.
OMP:JCH
abolished enzymatic activity
2014-07-24T20:09:28Z
A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished.
OMP:0006095
jonathanherrera
microbial_phenotype
A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished.
OMP:JCH
abolished oxidase activity
2014-07-24T20:11:44Z
A decreased oxidase activity phenotype where oxidase activity is abolished.
OMP:0006096
jonathanherrera
microbial_phenotype
A decreased oxidase activity phenotype where oxidase activity is abolished.
OMP:JCH
abolished urease activity
2014-07-24T20:17:01Z
A decreased urease activity phenotype where urease activity is abolished.
OMP:0006097
jonathanherrera
microbial_phenotype
A decreased urease activity phenotype where urease activity is abolished.
OMP:JCH
abolished aerotaxis
2014-07-24T20:18:01Z
A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished.
OMP:0006098
jonathanherrera
microbial_phenotype
A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished.
OMP:JCH
abolished budding
2014-07-25T11:08:59Z
A decreased budding phenotype where the fraction of budding cells is decreased to zero.
OMP:0006099
jonathanherrera
microbial_phenotype
A decreased budding phenotype where the fraction of budding cells is decreased to zero.
OMP:JCH
abolished motility by swimming
2014-08-15T19:12:43Z
A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished.
OMP:0006100
jonathanherrera
microbial_phenotype
A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished.
OMP:JCH
abolished caffeine resistance
2014-07-25T11:40:57Z
A caffeine resistance phenotype where resistance to caffeine is abolished.
OMP:0006101
jonathanherrera
microbial_phenotype
A caffeine resistance phenotype where resistance to caffeine is abolished.
OMP:JCH
abolished capsule formation
2014-07-25T11:52:24Z
A decreased amount of capsule phenotype where capsule is abolished.
OMP:0006102
jonathanherrera
microbial_phenotype
A decreased amount of capsule phenotype where capsule is abolished.
OMP:JCH
abolished organic carbon source utilization
2014-07-25T11:54:11Z
A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished.
OMP:0006103
jonathanherrera
microbial_phenotype
A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished.
OMP:JCH
abolished catalase activity
2014-07-25T11:59:12Z
A decreased catalase activity phenotype where catalase activity is abolished.
OMP:0006104
jonathanherrera
microbial_phenotype
A decreased catalase activity phenotype where catalase activity is abolished.
OMP:JCH
antimicrobial peptide production phenotype
2015-06-09T15:14:37Z
A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa.
OMP:0006105
microbial_phenotype
tkveton
A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa.
GO:0000276
OMP:TCK
altered antimicrobial peptide production
2015-06-09T15:16:13Z
An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control.
OMP:0006106
microbial_phenotype
tkveton
An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control.
OMP:TCK
presence of outer membrane vesicles
2014-07-28T18:19:45Z
A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles.
OMP:0006107
jonathanherrera
microbial_phenotype
vesiculation
A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles.
OMP:JCH
abolished chemotaxis
2014-07-25T12:11:10Z
A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished.
OMP:0006108
jonathanherrera
microbial_phenotype
A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished.
OMP:JCH
absence of outer membrane vesicles
2014-07-28T18:19:45Z
A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles.
OMP:0006109
jonathanherrera
microbial_phenotype
A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles.
OMP:JCH
abolished endospore formation
2014-07-25T12:21:50Z
A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished.
OMP:0006110
jonathanherrera
microbial_phenotype
A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished.
OMP:JCH
abolished chromosome segregation
2014-07-25T12:24:27Z
A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished.
OMP:0006111
jonathanherrera
microbial_phenotype
A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished.
OMP:JCH
abolished gene silencing
2014-07-25T12:40:10Z
A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished.
OMP:0006112
jonathanherrera
microbial_phenotype
A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished.
OMP:JCH
abolished homologous recombination
2014-07-25T12:45:20Z
A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished.
OMP:0006113
jonathanherrera
microbial_phenotype
A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished.
OMP:JCH
abolished site-specific recombination
2014-07-25T12:47:43Z
A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished.
OMP:0006114
jonathanherrera
microbial_phenotype
A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished.
OMP:JCH
abolished gene expression
2014-07-25T12:50:04Z
A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control.
OMP:0006115
jonathanherrera
microbial_phenotype
A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control.
OMP:JCH
abolished population growth at acidic pH
2014-07-25T12:58:01Z
An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished.
OMP:0006116
jonathanherrera
microbial_phenotype
An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished.
OMP:DAS
abolished population growth at alkaline pH
2014-07-25T13:02:17Z
An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished.
OMP:0006117
jonathanherrera
microbial_phenotype
An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished.
OMP:JCH
decreased antimicrobial peptide production
2015-06-09T15:17:23Z
An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control.
OMP:0006118
microbial_phenotype
tkveton
An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control.
OMP:TCK
abolished hemolysis
2014-07-25T13:17:12Z
A decreased hemolysis phenotype where hemolysis is abolished.
OMP:0006119
jonathanherrera
microbial_phenotype
A decreased hemolysis phenotype where hemolysis is abolished.
OMP:JCH
abolished heterocyst formation
2014-07-25T13:19:17Z
A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished.
OMP:0006120
jonathanherrera
microbial_phenotype
A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished.
OMP:JCH
abolished induced expression of the SOS response
2014-07-25T13:22:37Z
A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished.
OMP:0006121
jonathanherrera
microbial_phenotype
A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished.
OMP:JCH
abolished uninduced expression of the SOS response
2014-07-25T13:24:16Z
A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished.
OMP:0006122
jonathanherrera
microbial_phenotype
A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished.
OMP:JCH
abolished mitotic recombination
2014-07-25T13:27:32Z
A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished.
OMP:0006123
jonathanherrera
microbial_phenotype
A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished.
OMP:JCH
abolished mutation frequency
2014-07-25T14:05:31Z
A decreased mutation frequency phenotype where mutations no longer occur.
**This term was made obsolete because it describes a phenotype that is unlikely to occur in nature.
OMP:0006124
This term was made obsolete because it describes a phenotype that is unlikely to occur in nature.
jonathanherrera
microbial_phenotype
true
A decreased mutation frequency phenotype where mutations no longer occur.
**This term was made obsolete because it describes a phenotype that is unlikely to occur in nature.
OMP:JCH
abolished myxospore formation
2014-07-25T14:07:02Z
A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished.
OMP:0006125
jonathanherrera
microbial_phenotype
A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished.
OMP:JCH
altered DNA supercoiling
2014-07-25T14:11:37Z
A DNA supercoiling phenotype where supercoiling is altered relative to a designated control.
OMP:0006126
jonathanherrera
microbial_phenotype
A DNA supercoiling phenotype where supercoiling is altered relative to a designated control.
OMP:JCH
abolished negative DNA supercoiling
2014-07-25T14:16:09Z
A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished.
OMP:0006127
jonathanherrera
microbial_phenotype
A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished.
OMP:JCH
abolished positive DNA supercoiling
2014-07-25T14:16:27Z
A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished.
OMP:0006128
jonathanherrera
microbial_phenotype
A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished.
OMP:JCH
absence of negative supercoiling
2014-07-25T14:32:08Z
A DNA supercoiling phenotype where negative supercoiling is absent.
OMP:0006129
jonathanherrera
microbial_phenotype
A DNA supercoiling phenotype where negative supercoiling is absent.
OMP:JCH
absence of positive supercoiling
2014-07-25T14:32:42Z
A DNA supercoiling phenotype where positive supercoiling is absent.
OMP:0006130
jonathanherrera
microbial_phenotype
A DNA supercoiling phenotype where positive supercoiling is absent.
OMP:JCH
abolished flagella
2014-07-25T14:43:31Z
A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero.
OMP:0006131
jonathanherrera
microbial_phenotype
A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero.
OMP:JCH
abolished number of pili
2014-07-25T14:46:12Z
A decreased number of pili phenotype where the number of pili is decreased to zero.
OMP:0006132
jonathanherrera
microbial_phenotype
A decreased number of pili phenotype where the number of pili is decreased to zero.
OMP:JCH
abolished purine requirement
2014-07-25T14:47:24Z
A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished.
OMP:0006133
jonathanherrera
microbial_phenotype
A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished.
OMP:JCH
abolished quorum sensing
2014-07-25T14:49:11Z
A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished.
OMP:0006134
jonathanherrera
microbial_phenotype
A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished.
OMP:JCH
abolished biofilm formation
2014-07-25T14:50:55Z
A decreased biofilm formation phenotype where the ability to form a biofilm is abolished.
OMP:0006135
jonathanherrera
microbial_phenotype
A decreased biofilm formation phenotype where the ability to form a biofilm is abolished.
OMP:JCH
abolished transposition
2014-07-25T14:52:06Z
A decreased rate of transposition phenotype where the ability to perform transposition is abolished.
OMP:0006136
jonathanherrera
microbial_phenotype
A decreased rate of transposition phenotype where the ability to perform transposition is abolished.
OMP:JCH
abolished resistance to aminoglycoside
2014-07-25T14:54:43Z
A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished.
OMP:0006137
jonathanherrera
microbial_phenotype
A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished.
OMP:JCH
abolished resistance to aminopyrimidine
2014-07-25T14:59:06Z
A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished.
OMP:0006138
jonathanherrera
microbial_phenotype
A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished.
OMP:JCH
abolished resistance to azole
2014-07-25T15:00:48Z
A decreased resistance to azole phenotype where resistance to azole is abolished.
OMP:0006139
jonathanherrera
microbial_phenotype
A decreased resistance to azole phenotype where resistance to azole is abolished.
OMP:JCH
abolished resistance to bacteriocin
2014-07-25T15:02:13Z
A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished.
OMP:0006140
jonathanherrera
microbial_phenotype
A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished.
OMP:JCH
abolished resistance to beta-lactam
2014-07-25T15:04:08Z
A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished.
OMP:0006141
jonathanherrera
microbial_phenotype
A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished.
OMP:JCh
abolished resistance to chloramphenicol
2014-07-25T15:05:24Z
A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished.
OMP:0006142
jonathanherrera
microbial_phenotype
A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished.
OMP:JCH
abolished resistance to lantibiotic
2014-07-25T15:07:57Z
A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished.
OMP:0006143
jonathanherrera
microbial_phenotype
A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished.
OMP:JCh
abolished resistance to macrolide
2014-07-25T15:09:24Z
A decreased resistance to macrolide phenotype where resistance to macrolides is abolished.
OMP:0006144
jonathanherrera
microbial_phenotype
A decreased resistance to macrolide phenotype where resistance to macrolides is abolished.
OMP:JCH
abolished resistance to pteridine
2014-07-25T15:11:04Z
A decreased resistance to pteridine phenotype where resistance to pteridine is abolished.
OMP:0006145
jonathanherrera
microbial_phenotype
A decreased resistance to pteridine phenotype where resistance to pteridine is abolished.
OMP:JCH
abolished resistance to quinolone
2014-07-25T15:12:28Z
A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished.
OMP:0006146
jonathanherrera
microbial_phenotype
A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished.
OMP:JCH
abolished resistance to tetracycline
2014-07-25T15:18:09Z
A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished.
OMP:0006147
jonathanherrera
microbial_phenotype
A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished.
OMP:JCH
abolished stress-induced mutagenesis
2014-07-25T15:19:48Z
A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished.
OMP:0006148
jonathanherrera
microbial_phenotype
A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished.
OMP:JCH
abolished utilization of dinitrogen
2014-07-25T15:22:06Z
A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished.
OMP:0006149
jonathanherrera
microbial_phenotype
A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished.
OMP:JCH
abolished utilization of inorganic nitrogen
2014-07-25T15:23:03Z
A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen.
OMP:0006150
jonathanherrera
microbial_phenotype
A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen.
OMP:JCH
abolished utilization of inorganic phosphorus
2014-07-25T15:31:15Z
A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished.
OMP:0006151
jonathanherrera
microbial_phenotype
A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished.
OMP:JCH
abolished utilization of inorganic sulfur
2014-07-25T15:33:11Z
A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished.
OMP:0006152
jonathanherrera
microbial_phenotype
A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished.
OMP:JCH
abolished utilization of organic nitrogen
2014-07-25T15:36:09Z
An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished.
OMP:0006153
jonathanherrera
microbial_phenotype
An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished.
OMP:JCH
abolished utilization of organic phosphorus
2014-07-25T15:37:42Z
A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished.
OMP:0006154
jonathanherrera
microbial_phenotype
A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished.
OMP:JCH
abolished utilization of organic sulfur
2014-07-25T15:40:13Z
A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished.
OMP:0006155
jonathanherrera
microbial_phenotype
A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished.
OMP:JCH
altered outer membrane vesicles
2014-07-28T18:44:09Z
An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control.
OMP:0006156
jonathanherrera
microbial_phenotype
An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control.
OMP:JCH
abolished vitamin/enzyme cofactor requirement
2014-07-25T15:43:18Z
A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished.
OMP:0006157
jonathanherrera
microbial_phenotype
A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished.
OMP:JCH
increased outer membrane vesicle production
2014-07-28T18:45:05Z
An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control.
OMP:0006158
hyper-vesiculating
jonathanherrera
microbial_phenotype
An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control.
OMP:JCH
decreased outer membrane vesicle production
2014-07-28T18:45:05Z
An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control.
OMP:0006159
jonathanherrera
microbial_phenotype
An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control.
OMP:JCH
abolished outer membrane vesicle
2014-07-28T20:49:39Z
A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished.
OMP:0006160
jonathanherrera
microbial_phenotype
A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished.
OMP:JCH
altered endospore formation
2014-07-29T15:37:45Z
A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control.
OMP:0006161
jonathanherrera
microbial_phenotype
A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control.
OMP:JCH
altered nanotube phenotype
2014-07-29T18:03:06Z
A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control.
OMP:0006162
jonathanherrera
microbial_phenotype
A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control.
OMP:JCH
presence of heme utilization
2014-08-05T13:35:01Z
A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron.
OMP:0006163
jonathanherrera
microbial_phenotype
A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron.
OMP:JCH
altered colony size phenotype
2014-08-05T13:44:09Z
An colony size phenotype where size is altered relative to a designated control.
OMP:0006164
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
jonathanherrera
microbial_phenotype
An colony size phenotype where size is altered relative to a designated control.
OMP:JCH
cylindrical akinete
2014-08-06T17:30:58Z
An akinete morphology phenotype where the organism forms a cylindrical akinete.
OMP:0006165
jonathanherrera
microbial_phenotype
An akinete morphology phenotype where the organism forms a cylindrical akinete.
OMP:JCH
presence of binary fission
2014-08-08T15:51:18Z
A binary fission phenotype where an organism multiplies by the process of binary fission.
OMP:0006166
jonathanherrera
microbial_phenotype
A binary fission phenotype where an organism multiplies by the process of binary fission.
OMP:JCH
abolished motility by swarming
2014-08-13T17:25:47Z
A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished.
OMP:0006167
jonathanherrera
microbial_phenotype
A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished.
OMP:JCH
altered binary fission
2014-08-08T15:59:42Z
A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control.
OMP:0006168
jonathanherrera
microbial_phenotype
A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control.
OMP:JCH
increased binary fission
2014-08-08T16:01:46Z
An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control.
OMP:0006169
jonathanherrera
microbial_phenotype
An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control.
OMP:JCH
decreased binary fission
2014-08-08T16:01:46Z
An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control.
OMP:0006170
jonathanherrera
microbial_phenotype
An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control.
OMP:JCH
abolished binary fission
2014-08-08T16:01:54Z
A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished.
OMP:0006171
jonathanherrera
microbial_phenotype
A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished.
OMP:JCH
increased antimicrobial peptide production
2015-06-09T15:17:53Z
An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control.
OMP:0006172
microbial_phenotype
tkveton
An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control.
OMP:TCK
presence of multiple fission
2014-08-08T16:42:12Z
A multiple fission phenotype where an organism reproduces by the process of multiple fission.
OMP:0006173
jonathanherrera
microbial_phenotype
A multiple fission phenotype where an organism reproduces by the process of multiple fission.
OMP:JCH
altered multiple fission
2014-08-08T16:42:12Z
A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control.
OMP:0006174
jonathanherrera
microbial_phenotype
A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control.
OMP:JCH
decreased multiple fission
2014-08-08T16:46:45Z
An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control.
OMP:0006175
jonathanherrera
microbial_phenotype
An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control.
OMP:JCH
increased multiple fission
2014-08-08T16:46:45Z
An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control.
OMP:0006176
jonathanherrera
microbial_phenotype
An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control.
OMP:JCH
abolished multiple fission
2014-08-08T16:49:27Z
A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished.
OMP:0006177
jonathanherrera
microbial_phenotype
A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished.
OMP:JCH
abolished antimicrobial peptide production
2015-06-09T15:18:24Z
An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished.
OMP:0006178
microbial_phenotype
tkveton
An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished.
OMP:TCK
presence of antimicrobial peptide production
2015-06-09T15:19:02Z
An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide.
OMP:0006179
microbial_phenotype
tkveton
An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide.
OMP:TCK
absence of antimicrobial peptide production
2015-06-09T15:19:38Z
An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide.
OMP:0006180
microbial_phenotype
tkveton
An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide.
OMP:TCK
abolished motility
2014-06-29T14:10:40Z
A decreased motility phenotype where the ability of a microbe to be motile is abolished.
OMP:0007000
microbial_phenotype
siegele
A decreased motility phenotype where the ability of a microbe to be motile is abolished.
OMP:JCH
altered motility
2014-04-24T17:38:06Z
A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control.
OMP:0007001
microbial_phenotype
siegele
A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control.
OMP:DAS
decreased positive supercoiling
2013-09-05T16:08:29Z
An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control.
OMP:0007002
microbial_phenotype
siegele
An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control.
OMP:WAM
increased positive supercoiling
2013-09-05T16:09:28Z
An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control.
OMP:0007003
microbial_phenotype
siegele
An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control.
OMP:WAM
decreased resistance to pteridine
2014-01-31T18:03:55Z
A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control.
DeborahSiegele
OMP:0007004
increased sensitivity to pteridine
microbial_phenotype
A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control.
CHEBI:27601
OMP:DAS
decreased negative chemotaxis
2014-08-07T18:35:51Z
A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control.
OMP:0007005
dsiegele
microbial_phenotype
A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control.
OMP:DAS
population phenotype
2014-07-21T10:25:43Z
A microbial phenotype where the phenotype is observed at the level of a microbial population.
OBI:0000181
OMP:0007006
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
population
OBI:0000181
A microbial phenotype where the phenotype is observed at the level of a microbial population.
OMP:DAS
nutrient import phenotype
2014-07-31T16:11:22Z
A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment.
GO:0098657
OMP:0007007
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
import into cell
GO:0098657
A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment.
OMP:DAS
decreased population growth at acidic pH
2013-09-11T17:11:01Z
An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control.
OMP:0007008
microbial_phenotype
siegele
An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control.
OMP:DAS
increased population growth at acidic pH
2013-09-11T17:11:44Z
An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control.
OMP:0007009
microbial_phenotype
siegele
An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control.
OMP:DAS
decreased population growth at alkaline pH
2013-09-11T17:14:28Z
An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control.
OMP:0007010
microbial_phenotype
siegele
An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control.
OMP:DAS
increased population growth at alkaline pH
2013-09-11T17:14:56Z
An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control.
OMP:0007011
microbial_phenotype
siegele
An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control.
OMP:DAS
presence of inorganic carbon source utilization
2013-09-13T15:10:16Z
A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source.
OMP:0007012
autotrophy
microbial_phenotype
siegele
A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source.
ISBN:9780073402406
OMP:DAS
inorganic nitrogen source utilization phenotype
2013-09-13T15:19:33Z
A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen.
OMP:0007013
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
nitrate utilization, phenotype
siegele
A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen.
OMP:DAS
organic nitrogen source utilization phenotype
2013-09-13T15:20:24Z
A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen.
OMP:0007014
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen.
OMP:DAS
altered nutrient import phenotype
2014-07-31T16:16:15Z
A nutrient uptake phenotype that is altered relative to a designated control.
OMP:0007015
microbial_phenotype
siegele
A nutrient uptake phenotype that is altered relative to a designated control.
OMP:DAS
decreased nutrient import
2014-07-31T16:16:52Z
An altered nutrient import phenotype where import is decreased relative to a designated control.
OMP:0007016
microbial_phenotype
siegele
An altered nutrient import phenotype where import is decreased relative to a designated control.
OMP:DAS
abolished nutrient import
2014-07-31T16:18:02Z
A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished.
OMP:0007017
microbial_phenotype
siegele
A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished.
OMP:DAS
does not require growth factor(s)
2013-09-16T17:29:19Z
A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals.
OMP:0007018
microbial_phenotype
prototroph
prototrophic
siegele
A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals.
OMP:DAS
increased amino acid requirement
2013-09-16T17:30:07Z
An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control.
OMP:0007019
microbial_phenotype
siegele
An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control.
OMP:DAS
increased biofilm formation
2014-08-01T00:12:56Z
An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control.
OMP:0007020
microbial_phenotype
siegele
An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control.
OMP:DAS
decreased amino acid requirement
2013-09-17T16:13:20Z
An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control.
OMP:0007021
microbial_phenotype
siegele
An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control.
OMP:DAS
decreased purine requirement
2013-09-17T16:30:10Z
An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
OMP:0007022
microbial_phenotype
siegele
An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
OMP:DAS
increased purine requirement
2013-09-17T16:30:36Z
An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
OMP:0007023
microbial_phenotype
siegele
An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
OMP:DAS
increased vitamin/enzyme cofactor requirement
2013-09-17T16:31:05Z
A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control.
OMP:0007024
microbial_phenotype
siegele
A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control.
OMP:DAS
decreased vitamin/enzyme cofactor requirement
2013-09-17T16:33:34Z
A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control.
OMP:0007025
microbial_phenotype
siegele
A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control.
OMP:DAS
decreased biofilm formation
2014-08-01T00:12:56Z
An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control.
OMP:0007026
microbial_phenotype
siegele
An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control.
OMP:DAS
increased quorum sensing
2013-09-17T16:45:02Z
A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control.
OMP:0007027
microbial_phenotype
siegele
A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control.
OMP:DAS
decreased quorum sensing
2013-09-17T16:45:18Z
An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control.
OMP:0007028
microbial_phenotype
siegele
An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control.
OMP:DAS
decreased utilization of dinitrogen
2013-09-28T20:59:52Z
A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control.
DeborahSiegele
OMP:0007029
microbial_phenotype
A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control.
OMP:DAS
increased utilization of dinitrogen
2013-09-28T21:02:26Z
A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control.
DeborahSiegele
OMP:0007030
microbial_phenotype
A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control.
OMP:DAS
presence of dinitrogen utilization
2013-09-28T21:02:26Z
A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen.
DeborahSiegele
OMP:0007031
microbial_phenotype
A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen.
OMP:DAS
decreased utilization of inorganic nitrogen source
2013-09-28T21:03:56Z
An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control.
DeborahSiegele
OMP:0007032
microbial_phenotype
An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control.
OMP:DAS
increased utilization of inorganic nitrogen source
2013-09-28T21:05:18Z
An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control.
DeborahSiegele
OMP:0007033
microbial_phenotype
An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control.
OMP:DAS
utilization of inorganic nitrogen phenotype
2013-09-28T21:05:43Z
An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source.
DeborahSiegele
OMP:0007034
microbial_phenotype
An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source.
OMP:DAS
decreased organic nitrogen source utilization
2013-09-28T21:07:53Z
An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control.
DeborahSiegele
OMP:0007035
microbial_phenotype
An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control.
OMP:DAS
increased organic nitrogen source utilization
2013-09-28T21:07:58Z
An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control.
DeborahSiegele
OMP:0007036
microbial_phenotype
An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control.
OMP:DAS
utilization of organic nitrogen phenotype
2013-09-28T21:08:02Z
An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen.
DeborahSiegele
OMP:0007037
microbial_phenotype
true
An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen.
OMP:DAS
amino acid requirement
2013-09-29T00:27:05Z
A growth factor requirement phenotype where the required growth factor is one or more amino acids.
DeborahSiegele
OMP:0007038
homocysteine requirement
isoleucine requirement
methionine requirement
microbial_phenotype
valine requirement
CHEBI:27266
valine requirement
CHEBI:24898
isoleucine requirement
CHEBI:17230
homocysteine requirement
CHEBI:16811
methionine requirement
A growth factor requirement phenotype where the required growth factor is one or more amino acids.
OMP:DAS
purine requirement
2013-09-29T00:33:05Z
A requires growth factor(s) phenotype where the required growth factor is a purine base.
DeborahSiegele
OMP:0007039
adenine requirement
microbial_phenotype
A requires growth factor(s) phenotype where the required growth factor is a purine base.
OMP:DAS
CHEBI:16708
adenine requirement
vitamin/enzyme cofactor requirement
2013-09-29T00:36:46Z
A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor.
DeborahSiegele
OMP:0007040
microbial_phenotype
A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor.
OMP:DAS
decreased positive chemotaxis
2014-08-07T18:37:42Z
A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control.
OMP:0007041
dsiegele
microbial_phenotype
A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control.
OMP:DAS
sulfur source utilization phenotype
2013-09-29T09:39:03Z
A nutrient utilization phenotype where the nutrient is used as a source of sulfur.
DeborahSiegele
OMP:0007042
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A nutrient utilization phenotype where the nutrient is used as a source of sulfur.
OMP:DAS
phosphorus source utilization phenotype
2013-09-29T09:41:48Z
A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus.
DeborahSiegele
OMP:0007043
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus.
OMP:DAS
growth factor requirement phenotype
2013-10-01T15:07:53Z
A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction.
OMP:0007044
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction.
ISBN:9780878936083
OMP:DAS
inorganic phosphorus source utilization
2013-10-01T15:17:10Z
A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus.
OMP:0007045
microbial_phenotype
siegele
A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus.
OMP:DAS
organic phosphorus source utilization
2013-10-01T15:17:10Z
A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus.
OMP:0007046
microbial_phenotype
siegele
A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus.
OMP:DAS
decreased utilization of inorganic phosphorus source
2013-10-01T15:19:36Z
An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control.
OMP:0007047
microbial_phenotype
siegele
An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control.
OMP:DAS
increased utilization of inorganic phosphorus source
2013-10-01T15:19:36Z
An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control.
OMP:0007048
microbial_phenotype
siegele
An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control.
OMP:DAS
utilization of inorganic phosphorus phenotype
2013-10-01T15:19:36Z
An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus.
OMP:0007049
This term was made obsolete because it is redundant with OMP:0007045.
microbial_phenotype
siegele
true
An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus.
OMP:DAS
decreased utilization of organic phosphorus source
2013-10-01T15:20:22Z
An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control.
OMP:0007050
microbial_phenotype
siegele
An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control.
OMP:DAS
increased utilization of organic phosphorus source
2013-10-01T15:20:22Z
An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control.
OMP:0007051
microbial_phenotype
siegele
An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control.
OMP:DAS
utilization of organic phosphorus
2013-10-01T15:20:22Z
An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus.
OMP:0007052
This term was made obsolete because it is redunant with OMP:0007046.
microbial_phenotype
siegele
true
An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus.
OMP:DAS
increased positive chemotaxis
2014-08-08T18:08:51Z
An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control.
OMP:0007053
dsiegele
microbial_phenotype
An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control.
OMP:DAS
increased negative chemotaxis
2014-08-08T18:08:51Z
An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control.
OMP:0007054
dsiegele
microbial_phenotype
An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control.
OMP:DAS
decreased utilization of inorganic sulfur
2013-10-01T15:33:08Z
An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
OMP:0007055
microbial_phenotype
siegele
An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
OMP:DAS
increased utilization of inorganic sulfur
2013-10-01T15:33:32Z
An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
OMP:0007056
microbial_phenotype
siegele
An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
OMP:DAS
presence of inorganic sulfur utilization
2013-10-01T15:33:38Z
A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur.
OMP:0007057
microbial_phenotype
siegele
A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur.
OMP:DAS
decreased utilization of organic sulfur source
2013-10-01T15:34:00Z
An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
OMP:0007058
microbial_phenotype
siegele
An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
OMP:DAS
increased utilization of organic sulfur
2013-10-01T15:34:05Z
An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
OMP:0007059
microbial_phenotype
siegele
An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
OMP:DAS
presence of organic sulfur utilization
2013-10-01T15:34:09Z
A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur.
OMP:0007060
microbial_phenotype
siegele
A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur.
OMP:DAS
iron source utilization phenotype
2013-10-01T15:46:38Z
A nutrient utilization phenotype where the nutrient is being used as a source of iron.
OMP:0007061
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A nutrient utilization phenotype where the nutrient is being used as a source of iron.
OMP:JCH
increased heterocyst formation
2014-01-31T18:31:01Z
A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control.
DeborahSiegele
OMP:0007062
microbial_phenotype
A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control.
OMP:DAS
increased myxospore formation
2014-01-31T18:45:09Z
An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control.
DeborahSiegele
OMP:0007063
microbial_phenotype
An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control.
OMP:DAS
phototrophic phenotype
2014-01-31T18:49:00Z
An energy metabolism phenotype where light is used as the energy source.
DeborahSiegele
OMP:0007064
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
phototroph
An energy metabolism phenotype where light is used as the energy source.
ISBN:978-0-07-340240-6
OMP:DAS
pteridine resistance phenotype
2014-02-03T15:39:56Z
An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound.
CHEBI:26373
OMP:0007065
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
antifolate resistance
methotrexate resistance phenotype
microbial_phenotype
pteridine sensitivity phenotype
siegele
An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound.
CHEBI:26373
OMP:DAS
CHEBI:44185
methotrexate resistance phenotype
CHEBI:73913
antifolate resistance
asexual reproduction phenotype
2014-02-03T15:55:25Z
A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process.
GO:0019954
OMP:0007066
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
asexual reproduction
GO:0019954
A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process.
ISBN:0673521435
OMP:DAS
binary fission phenotype
2014-02-03T15:55:54Z
An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape.
GO:0043093
OMP:0007067
microbial_phenotype
siegele
An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape.
ISBN:0673521435
OMP:DAS
cytokinesis by binary fission
GO:0043093
multiple fission phenotype
2014-02-03T16:09:27Z
An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells.
OMP:0007068
baeocyte formation
microbial_phenotype
siegele
An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells.
ISBN:9781593392925
OMP:JCH
requires growth factor(s)
2014-02-21T15:07:59Z
A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium.
OMP:0007069
auxotroph
auxotrophic
microbial_phenotype
siegele
A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium.
OMP:DAS
decreased organic carbon source utilization
2014-02-21T15:18:08Z
An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control.
OMP:0007070
microbial_phenotype
siegele
An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control.
OMP:DAS
increased organic carbon source utilization
2014-02-21T15:18:41Z
An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control.
OMP:0007071
microbial_phenotype
siegele
An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control.
OMP:DAS
anaerobic respiration phenotype
2014-02-21T15:28:04Z
A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2).
OMP:0007072
microbial_phenotype
siegele
A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2).
ISBN:978-0-07-340240-6
OMP:DAS
fermentation phenotype
2014-02-21T15:31:32Z
An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain.
OMP:0007073
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain.
ISBN:978-0-07-340240-6
OMP:DAS
increased growth factor requirement
2014-02-21T15:42:23Z
A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control.
OMP:0007074
microbial_phenotype
siegele
A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control.
OMP:DAS
decreased growth factor requirement
2014-02-21T15:42:44Z
A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control.
OMP:0007075
microbial_phenotype
siegele
A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control.
OMP:DAS
altered aerotaxis
2014-04-24T17:41:34Z
An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control.
OMP:0007076
microbial_phenotype
siegele
An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control.
OMP:JCH
altered chemotaxis
2014-04-24T17:43:04Z
A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control.
OMP:0007077
microbial_phenotype
siegele
A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control.
OMP:JCH
altered carbon source utilization
2014-04-30T15:40:12Z
An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control.
OMP:0007078
microbial_phenotype
siegele
An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control.
OMP:JCH
altered growth factor requirement
2014-04-30T15:52:18Z
A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control.
OMP:0007079
microbial_phenotype
siegele
A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control.
OMP:JCH
altered gene expression
2014-08-11T16:32:07Z
A gene expression phenotype where expression of a gene or genes is altered relative to a designated control.
OMP:0007080
dsiegele
microbial_phenotype
A gene expression phenotype where expression of a gene or genes is altered relative to a designated control.
OMP:DAS
altered purine requirement
2014-04-30T16:03:42Z
An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control.
OMP:0007081
microbial_phenotype
siegele
An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control.
OMP:JCH
altered vitamin/enzyme cofactor requirement
2014-04-30T16:07:16Z
An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control.
OMP:0007082
microbial_phenotype
siegele
An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control.
OMP:JCH
altered cell size
2014-07-06T14:41:49Z
An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control.
OMP:0007083
microbial_phenotype
siegele
An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control.
OMP:DAS
decreased cell length
2014-07-06T14:43:59Z
An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control.
OMP:0007084
microbial_phenotype
siegele
An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control.
OMP:DAS
altered microbial phenotype
2014-07-10T12:28:36Z
A microbial phenotype that is altered in some way relative to a designated control.
OMP:0007085
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype that is altered in some way relative to a designated control.
OMP:DAS
altered sulfur source utilization phenotype
2014-07-10T12:40:51Z
A sulfur source utilization phenotype that is altered relative to a designated control.
OMP:0007086
microbial_phenotype
siegele
A sulfur source utilization phenotype that is altered relative to a designated control.
OMP:DAS
altered iron source utilization
2014-07-10T12:48:21Z
An iron source utilization phenotype that is altered relative to a designated control.
OMP:0007087
microbial_phenotype
siegele
An iron source utilization phenotype that is altered relative to a designated control.
OMP:DAS
altered heme utilization phenotype
2014-07-10T12:49:28Z
A heme utilization phenotype altered relative to a designated control.
OMP:0007088
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A heme utilization phenotype altered relative to a designated control.
OMP:JCH
abolished heme utilization
2014-07-10T12:51:30Z
A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished.
OMP:0007089
microbial_phenotype
siegele
A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished.
OMP:JCH
more rod-like cell shape
2014-07-10T21:50:33Z
An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control.
OMP:0007090
microbial_phenotype
siegele
An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control.
OMP:DAS
decreased motility by gliding
2014-07-10T20:08:43Z
A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control.
OMP:0007091
microbial_phenotype
siegele
A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control.
OMP:JCH
decreased motility by swarming
2014-07-10T20:08:43Z
A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control.
OMP:0007092
microbial_phenotype
siegele
A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control.
OMP:JCH
decreased motility by swimming
2014-07-10T20:08:43Z
A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control.
OMP:0007093
microbial_phenotype
siegele
A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control.
OMP:JCH
decreased motility by twitching
2014-07-10T20:08:43Z
A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control.
OMP:0007094
microbial_phenotype
siegele
A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control.
OMP:JCH
increased motility by gliding
2014-07-10T20:10:11Z
An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control.
OMP:0007095
microbial_phenotype
siegele
An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control.
OMP:JCH
increased motility by swarming
2014-07-10T20:10:11Z
An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control.
OMP:0007096
microbial_phenotype
siegele
An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control.
OMP:JCH
increased motility by swimming
2014-07-10T20:10:11Z
An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control.
OMP:0007097
microbial_phenotype
siegele
An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control.
OMP:JCH
increased motility by twitching
2014-07-10T20:10:11Z
An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control.
OMP:0007098
microbial_phenotype
siegele
An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control.
OMP:JCH
cylindrical cell shape
2014-07-10T20:13:46Z
A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter.
OMP:0007099
PATO:0001873
microbial_phenotype
siegele
A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter.
OMP:DAS
spheroid cell shape
2014-07-10T20:13:46Z
A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes.
OMP:0007100
PATO:0001865
microbial_phenotype
siegele
A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes.
OMP:DAS
altered cell shape
2014-07-10T20:24:53Z
A cell shape phenotype where the shape of a cell is altered relative to a designated control.
APO::0000051
OMP:0007101
microbial_phenotype
siegele
A cell shape phenotype where the shape of a cell is altered relative to a designated control.
OMP:DAS
cell shape
APO::0000051
more rounded cell shape
2014-07-10T21:51:13Z
An altered cell shape phenotype where a cell's shape is rounder than that of a designated control.
OMP:0007102
microbial_phenotype
siegele
An altered cell shape phenotype where a cell's shape is rounder than that of a designated control.
OMP:DAS
altered cell morphology
2014-07-10T22:43:40Z
A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control.
OMP:0007103
abnormal cell morphology
microbial_phenotype
siegele
A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control.
OMP:DAS
FYPO:0000005
abnormal cell morphology
altered nutrient utilization
2014-07-10T22:45:48Z
A nutrient utilization phenotype that is altered relative to a designated control.
OMP:0007104
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A nutrient utilization phenotype that is altered relative to a designated control.
OMP:DAS
altered flagellum
2014-07-10T23:00:30Z
A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control.
OMP:0007105
microbial_phenotype
siegele
A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control.
OMP:DAS
transcription phenotype
2014-08-11T16:37:39Z
A gene expression phenotype that affects DNA-dependent transcription.
GO:0006351
OMP:0007106
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
A gene expression phenotype that affects DNA-dependent transcription.
GO:0006351
OMP:DAS
transcription, DNA-templated
GO:0006351
translation phenotype
2014-08-11T16:37:39Z
A gene expression phenotype that affects translation of one or more mRNAs.
FYPO:0000291
GO:0006412
OMP:0007107
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
translation
GO:0006412
translation phenotype
FYPO:0000291
A gene expression phenotype that affects translation of one or more mRNAs.
GO:0006412
OMP:DAS
altered transcription
2014-08-11T16:37:59Z
A transcription phenotype where transcription of a gene or genes is altered relative to a designated control.
OMP:0007108
dsiegele
microbial_phenotype
A transcription phenotype where transcription of a gene or genes is altered relative to a designated control.
OMP:DAS
chemotrophic phenotype
2014-07-17T13:45:13Z
An energy metabolism phenotype where energy is obtained from the oxidation of chemicals.
OMP:0007109
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
An energy metabolism phenotype where energy is obtained from the oxidation of chemicals.
ISBN:978-0-07-340240-6
OMP:DAS
chemolithotrophic
2014-07-17T13:46:04Z
A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals.
OMP:0007110
microbial_phenotype
siegele
A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals.
ISBN:978-0-07-340240-6
OMP:DAS
chemoorganotrophic
2014-07-17T13:46:04Z
A chemotrophic phenotype where energy is derived from the oxidation of organic molecules.
OMP:0007111
microbial_phenotype
organotroph
siegele
A chemotrophic phenotype where energy is derived from the oxidation of organic molecules.
ISBN:978-0-07-340240-6
OMP:DAS
respiration phenotype
2014-07-17T13:56:17Z
An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor.
GO:0045333
OMP:0007112
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
cellular respiration
GO:0045333
An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor.
ISBN:978-0-07-340240-6
OMP:DAS
ferrous iron (Fe2+) oxidation
2014-07-17T14:28:35Z
A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+).
OMP:0007113
microbial_phenotype
siegele
A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+).
ISBN:978-0-07-340240-6
OMP:DAS
sulfide (H2S) oxidation
2014-07-17T14:28:35Z
A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S).
OMP:0007114
microbial_phenotype
siegele
A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S).
ISBN:978-0-07-340240-6
OMP:DAS
altered population growth rate
2014-07-17T16:29:34Z
A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control.
OMP:0007115
altered doubling time
altered generation time
altered growth rate
microbial_phenotype
siegele
A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control.
OMP:DAS
altered cell stalk
2014-07-18T13:53:13Z
An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control.
OMP:0007116
microbial_phenotype
siegele
An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control.
OMP:DAS
increased transcription of gene or operon
2014-08-11T16:41:06Z
An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control.
OMP:0007117
dsiegele
microbial_phenotype
An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control.
OMP:DAS
decreased transcription of gene or operon
2014-08-11T16:41:06Z
An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control.
OMP:0007118
dsiegele
microbial_phenotype
An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control.
OMP:DAS
abolished transcription of gene or operon
2014-08-11T16:42:21Z
A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control.
OMP:0007119
dsiegele
microbial_phenotype
A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control.
OMP:DAS
decreased transcription of sigma-factor dependent genes
2014-08-11T16:57:46Z
A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control.
OMP:0007120
The UniProt accession for the particular sigma factor should be entered in the extension field.
dsiegele
microbial_phenotype
A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control.
OMP:DAS
increased transcription of sigma-factor dependent genes
2014-08-11T17:02:37Z
An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control.
OMP:0007121
The UniProt accession for the particular sigma factor should be entered in the extension field.
dsiegele
microbial_phenotype
An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control.
OMP:DAS
altered translation
2014-08-11T17:07:54Z
A translation phenotype where translation of one or more mRNAs is altered relative to a designated control.
OMP:0007122
dsiegele
microbial_phenotype
A translation phenotype where translation of one or more mRNAs is altered relative to a designated control.
OMP:DAS
Increased translation
2014-08-11T17:10:06Z
An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control.
OMP:0007123
dsiegele
microbial_phenotype
An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control.
OMP:DAS
decreased translation
2014-08-11T17:10:06Z
An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control.
OMP:0007124
dsiegele
microbial_phenotype
An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control.
OMP:DAS
abolished translation
2014-08-11T17:10:06Z
A decreased translation phenotype where translation of one or more mRNAs is abolished.
OMP:0007125
dsiegele
microbial_phenotype
A decreased translation phenotype where translation of one or more mRNAs is abolished.
OMP:DAS
viscous colony consistency
2014-08-11T17:58:30Z
A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency.
OMP:0007126
SNOMEDCT:16601003
dsiegele
microbial_phenotype
Bacterial colony consistency, viscous
SNOMEDCT:16601003
A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency.
ISBN:1555810489
OMP:WAM
altered taxis
2014-08-12T13:30:01Z
A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control.
OMP:0007127
dsiegele
microbial_phenotype
A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control.
OMP:DAS
altered cell arrangement
2014-08-12T13:36:13Z
A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control.
OMP:0007128
dsiegele
microbial_phenotype
A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control.
OMP:DAS
altered outer membrane vesicle production
2014-08-14T18:22:16Z
An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control.
OMP:0007129
dsiegele
microbial_phenotype
An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control.
OMP:DAS
differential test phenotype
2014-08-16T16:40:58Z
A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms.
OMP:0007130
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms.
ISBN:9780895828309
OMP:DAS
altered differential test result
2014-08-16T16:44:03Z
A differential media phenotype where the results of a differential test are altered relative to a designated control.
OMP:0007131
microbial_phenotype
siegele
A differential media phenotype where the results of a differential test are altered relative to a designated control.
OMP:DAS
decreased flagellum length
2014-08-17T00:46:29Z
An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control.
OMP:0007132
microbial_phenotype
siegele
An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control.
OMP:DAS
altered capsule phenotype
2014-08-17T12:52:35Z
A capsule phenotype where the capsule layer is altered relative to a designated control.
OMP:0007133
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A capsule phenotype where the capsule layer is altered relative to a designated control.
OMP:DAS
altered resistance to an antimicrobial agent
2014-08-17T13:12:31Z
An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control.
OMP:0007134
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control.
OMP:DAS
not resistant to alkaloid
2014-08-17T13:19:30Z
An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound.
OMP:0007135
microbial_phenotype
siegele
An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound.
OMP:DAS
resistant to alkaloid
2014-08-17T13:19:30Z
An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds.
OMP:0007136
microbial_phenotype
siegele
An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds.
OMP:DAS
altered alkaloid resistance
2014-08-17T13:19:30Z
An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control.
OMP:0007137
microbial_phenotype
siegele
An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control.
OMP:DAS
altered effects of pH on population growth
2014-08-17T17:35:20Z
A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control.
OMP:0007138
microbial_phenotype
siegele
A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control.
OMP:DAS
altered lantibiotic resistance phenotype
2014-08-17T18:03:16Z
A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control.
OMP:0007139
lantibiotic sensitivity phenotype
microbial_phenotype
siegele
A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control.
OMP:DAS
schizogeny phenotype
2014-08-18T17:02:12Z
A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell.
GO:0020014
OMP:0007140
microbial_phenotype
siegele
A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell.
ISBN:9781593392925
OMP:DAS
schizogeny
GO:0020014
presence of schizogeny
2014-08-18T17:12:34Z
A schizogeny phenotype where an organism reproduces by the process of schizogeny.
OMP:0007141
microbial_phenotype
siegele
A schizogeny phenotype where an organism reproduces by the process of schizogeny.
OMP:DAS
asexual sporulation phenotype
2014-08-18T17:15:43Z
A sporulation phenotype related to the formation of spores derived from the products of mitosis.
GO:0030436
OMP:0007142
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
mitotic spore formation
siegele
A sporulation phenotype related to the formation of spores derived from the products of mitosis.
GO:0030436
OMP:DAS
PMID:9781593392925
asexual sporulation
GO:0030436
presence of asexual sporulation
2014-08-18T17:19:11Z
An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores.
OMP:0007143
microbial_phenotype
siegele
An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores.
OMP:DAS
altered asexual reproduction
2014-08-18T17:22:42Z
An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control.
OMP:0007144
microbial_phenotype
siegele
An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control.
OMP:DAS
altered asexual sporulation
2014-08-18T17:23:30Z
An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control.
OMP:0007145
microbial_phenotype
siegele
An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control.
OMP:DAS
altered schizogeny
2014-08-18T17:24:18Z
A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control.
OMP:0007146
microbial_phenotype
siegele
A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control.
OMP:DAS
altered DNA replication
2014-08-19T14:26:57Z
A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control.
OMP:0007147
microbial_phenotype
siegele
A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control.
OMP:DAS
cytokinesis phenotype
2014-08-19T14:37:21Z
A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells.
GO:0000910
OMP:0007148
cell division phenotype
microbial_phenotype
siegele
A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells.
OMP:DAS
cytokinesis
GO:0000910
septation phenotype
2014-08-19T14:52:08Z
A cytokinesis phenotype related to the process of forming a septum that separates daughter cells.
OMP:0007149
abnormal septation
microbial_phenotype
siegele
FYPO:0000117
abnormal septation
A cytokinesis phenotype related to the process of forming a septum that separates daughter cells.
OMP:DAS
abolished motility by gliding
2014-08-20T23:57:11Z
A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished.
OMP:0007150
microbial_phenotype
siegele
A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished.
OMP:DAS
altered colony pigmentation
2014-08-27T22:56:03Z
A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control.
OMP:0007151
microbial_phenotype
siegele
A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control.
OMP:DAS
persister cell phenotype
2014-08-28T11:55:19Z
A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics.
OMP:0007152
microbial_phenotype
siegele
A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics.
OMP:DAS
PMID:20528688
altered persister cell phenotype
2014-08-28T11:57:56Z
A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control.
OMP:0007153
microbial_phenotype
siegele
A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control.
OMP:DAS
increased frequency of persister cells
2014-08-28T11:59:20Z
An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control.
OMP:0007154
microbial_phenotype
siegele
An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control.
OMP:DAS
decreased frequency of persister cells
2014-08-28T12:00:42Z
An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control.
OMP:0007155
microbial_phenotype
siegele
An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control.
OMP:DAS
population growth rate phenotype
2014-08-28T12:14:20Z
A population growth phenotype concerning the rate at which a microbial population multiplies over time.
OMP:0007156
microbial_phenotype
siegele
A population growth phenotype concerning the rate at which a microbial population multiplies over time.
OMP:DAS
altered population growth
2014-08-28T12:15:47Z
A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control.
OMP:0007157
microbial_phenotype
siegele
A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control.
OMP:DAS
altered response to stress phenotype
2014-08-28T16:51:03Z
A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control.
OMP:0007158
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control.
OMP:DAS
altered response to radiation stress
2014-08-28T17:03:47Z
A radiation stress phenotype that is altered relative to a designated control.
OMP:0007159
microbial_phenotype
siegele
A radiation stress phenotype that is altered relative to a designated control.
OMP:DAS
altered colony morphology
2014-08-29T12:27:50Z
A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control.
OMP:0007160
microbial_phenotype
siegele
A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control.
OMP:DAS
regulation phenotype
2014-09-14T14:45:03Z
A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality.
FYPO:0000145
OMP:0007161
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
regulation phenotype
FYPO:0000145
A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality.
OMP:DAS
gene expression regulation phenotype
2014-09-14T14:47:50Z
A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover.
FYPO:0000288
OMP:0007162
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
gene expression regulation phenotype
FYPO:0000288
A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover.
OMP:DAS
transcription regulation phenotype
2014-09-14T14:52:31Z
A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription.
FYPO:0000143
OMP:0007163
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription.
OMP:DAS
transcription regulation phenotype
FYPO:0000143
translation regulation phenotype
2014-09-14T14:54:10Z
A gene expression regulation phenotype that affects the regulation of translation.
FYPO:0000289
OMP:0007164
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
protein synthesis regulation
siegele
translation regulation phenotype
FYPO:0000289
A gene expression regulation phenotype that affects the regulation of translation.
OMP:DAS
altered septation
2014-09-14T15:35:53Z
A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control.
OMP:0007165
microbial_phenotype
siegele
A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control.
OMP:DAS
altered cytokinesis
2014-09-14T15:36:38Z
A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control.
OMP:0007166
microbial_phenotype
siegele
A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control.
OMP:DAS
population growth phenotype
2014-09-25T17:14:07Z
A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population.
GO:0000003
OMP:0007167
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population.
OMP:DAS
reproduction
GO:0000003
abolished septation
2014-09-25T17:18:11Z
A decreased septation phenotype where formation of new cell septa is abolished.
OMP:0007168
microbial_phenotype
siegele
A decreased septation phenotype where formation of new cell septa is abolished.
OMP:DAS
antimicrobial peptide resistance phenotype
2014-09-26T15:57:03Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached.
**This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action.
OMP:0007169
OMP:0007881
microbial_phenotype
siegele
true
An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached.
**This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action.
OMP:DAS
altered resistance to host defense peptides
2014-09-26T16:02:16Z
An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control.
OMP:0007170
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control.
OMP:DAS
resistant to host defense peptide
2014-09-26T16:02:16Z
A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides.
OMP:0007171
microbial_phenotype
siegele
A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides.
OMP:DAS
not resistant to host defense peptide
2014-09-26T16:02:16Z
A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides.
OMP:0007172
microbial_phenotype
siegele
A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides.
OMP:DAS
decreased resistance to host defense peptides
2014-09-26T16:02:54Z
An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control.
Increased sensitivity to host defense peptide
OMP:0007173
microbial_phenotype
siegele
An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control.
OMP:DAS
increased resistance to host defense peptides
2014-09-26T16:02:54Z
An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control.
OMP:0007174
microbial_phenotype
siegele
An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control.
OMP:DAS
presence of aerobic respiration
2014-09-29T14:00:51Z
An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration.
OMP:0007175
microbial_phenotype
siegele
An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration.
OMP:DAS
absence of aerobic respiration
2014-09-29T14:02:56Z
An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration.
OMP:0007176
microbial_phenotype
siegele
An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration.
OMP:DAS
altered aerobic respiration
2014-09-29T14:04:45Z
An aerobic respiration phenotype that is altered relative to a designated control.
OMP:0007177
microbial_phenotype
siegele
An aerobic respiration phenotype that is altered relative to a designated control.
OMP:DAS
increased aerobic respiration
2014-09-29T14:05:44Z
An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control.
OMP:0007178
microbial_phenotype
siegele
An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control.
OMP:DAS
decreased aerobic respiration
2014-09-29T14:06:33Z
An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control.
OMP:0007179
microbial_phenotype
siegele
An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control.
OMP:DAS
abolished aerobic respiration
2014-09-29T14:07:17Z
A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished.
OMP:0007180
microbial_phenotype
siegele
A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished.
OMP:DAS
presence of anaerobic respiration
2014-09-29T14:08:46Z
An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration.
OMP:0007181
microbial_phenotype
siegele
An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration.
OMP:DAS
absence of anaerobic respiration
2014-09-29T14:08:46Z
An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration.
OMP:0007182
microbial_phenotype
siegele
An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration.
OMP:DAS
altered anaerobic respiration
2014-09-29T14:08:46Z
An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control.
OMP:0007183
microbial_phenotype
siegele
An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control.
OMP:DAS
increased anaerobic respiration
2014-09-29T14:08:46Z
An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control.
OMP:0007184
microbial_phenotype
siegele
An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control.
OMP:DAS
decreased anaerobic respiration
2014-09-29T14:08:46Z
An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control.
OMP:0007185
microbial_phenotype
siegele
An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control.
OMP:DAS
abolished anaerobic respiration
2014-09-29T14:08:46Z
A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished.
OMP:0007186
microbial_phenotype
siegele
A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished.
OMP:DAS
quality (Interim)
2014-10-03T17:22:57Z
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
OMP:0007187
microbial_phenotype
siegele
true
altered_process_quality
2014-10-03T17:27:01Z
A quality which inheres in an process that is altered in same way relative to a designated control.
OMP:0007188
microbial_phenotype
siegele
A quality which inheres in an process that is altered in same way relative to a designated control.
OMP:DAS
PATO:0001236
altered_relative_to
2014-10-03T17:45:57Z
A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity.
OMP:0007189
microbial_phenotype
siegele
A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity.
OMP:DAS
altered dinitrogen utilization
2014-10-04T01:42:58Z
A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control.
OMP:0007190
microbial_phenotype
siegele
A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control.
OMP:DAS
absence of dinitrogen utilization
2014-10-04T01:44:57Z
A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen.
OMP:0007191
microbial_phenotype
siegele
A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen.
OMP:DAS
effect of non-nutrient environmental factors on population growth phenotype
2014-10-04T18:41:07Z
A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population.
OMP:0007192
microbial_phenotype
siegele
A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population.
ISBN:9780073402406
OMP:DAS
altered_physical_object_quality
2014-10-04T19:34:54Z
A physical object quality that is altered relative to a designated control.
OMP:0007193
microbial_phenotype
siegele
A physical object quality that is altered relative to a designated control.
OMP:DAS
biological process phenotype
2014-10-18T21:38:46Z
A microbial phenotype that affects a biological process.
FYPO:0000300
GO:0008150
OMP:0007194
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
biological_process
GO:0008150
A microbial phenotype that affects a biological process.
FYPO:0000300
OMP:DAS
biological process phenotype
FYPO:0000300
chemical resistance phenotype
2014-10-18T21:39:28Z
A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity.
APO:0000087
OMP:0007195
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
chemical sensitivity phenotype
microbial_phenotype
siegele
resistance to chemicals
APO:0000087
A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity.
OMP:DAS
altered akinete formation
2014-10-20T15:08:04Z
An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control.
OMP:0007196
microbial_phenotype
siegele
An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control.
OMP:DAS
cellular component phenotype
2014-10-21T23:28:25Z
A microbial phenotype that affects a quality of a cellular component.
CMPO:0000259
GO:0005575
OMP:0007197
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype that affects a quality of a cellular component.
OMP:DAS
cellular component phenotype
CMPO:0000259
cellular_component
GO:0005575
presence of resistance to UV-A radiation
2015-02-04T21:53:26Z
A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm).
OMP:0007198
microbial_phenotype
siegele
A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm).
ISO:21348
OMP:DAS
presence of resistance to UV-B radiation
2015-02-04T22:00:52Z
A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm).
OMP:0007199
microbial_phenotype
siegele
A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm).
ISO:21348
OMP:DAS
presence of resistance to UV-C radiation
2015-02-04T22:02:13Z
A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm).
OMP:0007200
microbial_phenotype
siegele
A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm).
ISO:21348
OMP:DAS
decreased resistance to UV-C radiation
2015-02-04T22:03:32Z
A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control.
OMP:0007201
microbial_phenotype
siegele
A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control.
OMP:DAS
abolished resistance to UV-C radiation
2015-02-04T22:05:25Z
A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished.
OMP:0007202
microbial_phenotype
siegele
A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished.
OMP:DAS
altered gene expression regulation
2015-02-05T11:12:46Z
A gene expression regulation phenotype that is altered relative to a designated control.
OMP:0007203
microbial_phenotype
siegele
A gene expression regulation phenotype that is altered relative to a designated control.
OMP:DAS
decreased resistance to UV-A radiation
2015-02-05T11:30:34Z
A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control.
OMP:0007204
microbial_phenotype
siegele
A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control.
OMP:DAS
decreased resistance to UV-B radiation
2015-02-05T11:31:00Z
A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control.
OMP:0007205
microbial_phenotype
siegele
A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control.
OMP:DAS
increased resistance to UV-A
2015-02-05T11:35:37Z
An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control.
OMP:0007206
microbial_phenotype
siegele
An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control.
OMP:DAS
increased resistance to UV-B
2015-02-05T11:35:59Z
An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control.
OMP:0007207
microbial_phenotype
siegele
An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control.
OMP:DAS
increased resistance to UV-C
2015-02-05T11:36:16Z
An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control.
OMP:0007208
microbial_phenotype
siegele
An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control.
OMP:DAS
presence of RecA-mediated homologous recombination
2015-02-17T12:08:11Z
A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein.
OMP:0007209
dsiegele
microbial_phenotype
A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein.
OMP:DAS
presence of lambda Red-mediated recombination
2015-02-17T12:13:27Z
A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo).
OMP:0007210
dsiegele
microbial_phenotype
A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo).
OMP:DAS
altered trace element utilization
2015-03-13T15:13:30Z
A trace element utilization phenotype that is altered relative to a designated control.
OMP:0007211
altered micronutrient utilization
microbial_phenotype
siegele
A trace element utilization phenotype that is altered relative to a designated control.
OMP:DAS
altered phosphorus source utilization
2015-03-13T15:23:04Z
A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control.
OMP:0007212
microbial_phenotype
siegele
A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control.
OMP:DAS
altered inorganic phosphorus source utilization
2015-03-13T15:25:43Z
An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control.
OMP:0007213
microbial_phenotype
siegele
An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control.
OMP:DAS
altered organic phosphorus source utilization
2015-03-13T15:29:56Z
An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control.
OMP:0007214
microbial_phenotype
siegele
An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control.
OMP:DAS
rifamycin resistance phenotype
2015-03-15T22:30:48Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds.
CHEBI:26580
OMP:0007215
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
rifabutin resistance phenotype
rifampicin resistance phenotype
rifapentine resistance phenotype
siegele
CHEBI:28077
rifampicin resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds.
CHEBI:26580
OMP:DAS
rifamycin
CHEBI:26580
CHEBI:45304
rifapentine resistance phenotype
CHEBI:45367
rifabutin resistance phenotype
altered rifamycin resistance
2015-03-15T22:32:58Z
A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control.
OMP:0007216
microbial_phenotype
siegele
A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control.
OMP:DAS
not resistant to rifamycin
2015-03-15T22:32:58Z
A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins.
OMP:0007217
microbial_phenotype
siegele
A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins.
OMP:DAS
resistant to rifamycin
2015-03-15T22:32:58Z
A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins.
OMP:0007218
microbial_phenotype
siegele
A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins.
OMP:DAS
decreased resistance to rifamycin
2015-03-15T22:37:30Z
An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control.
OMP:0007219
microbial_phenotype
siegele
An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control.
OMP:DAS
increased resistance to rifamycin
2015-03-15T22:39:31Z
An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control.
OMP:0007220
microbial_phenotype
siegele
An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control.
OMP:DAS
abolished resistance to rifamycin
2015-03-15T22:40:32Z
A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished.
OMP:0007221
microbial_phenotype
siegele
A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished.
OMP:DAS
growth rate control of transcription
2015-05-20T16:23:34Z
A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases.
OMP:0007222
microbial_phenotype
siegele
A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases.
OMP:DAS
PMID:11844765
decreased spore germination efficiency
2015-06-01T16:03:03Z
A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control.
OMP:0007223
dsiegele
microbial_phenotype
A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control.
OMP:DAS
endospore location phenotype
2015-06-03T16:03:42Z
An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium).
OMP:0007224
dsiegele
microbial_phenotype
An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium).
OMP:KDA
central location of endospore
2015-06-03T16:06:06Z
An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium).
OMP:0007225
dsiegele
microbial_phenotype
An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium).
ISBN:9780073402406
OMP:DAS
terminal location of endospore
2015-06-04T15:40:39Z
An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium).
OMP:0007226
dsiegele
microbial_phenotype
An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium).
OMP:DAS
swollen sporangium
2015-06-04T15:42:45Z
A xx.
OMP:0007227
dsiegele
microbial_phenotype
A xx.
ISBN:9780073402406
OMP:DAS
endospore morphology phenotype
2015-06-04T16:05:37Z
A spore morphology phenotype that is related to the form and structure of an endospore.
OMP:0007228
dsiegele
microbial_phenotype
A spore morphology phenotype that is related to the form and structure of an endospore.
CL:0000563
GO:0034301
OMP:DAS
endospore external encapsulating structure phenotype
2015-06-04T16:17:34Z
An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore.
GO:0043591
OMP:0007229
dsiegele
microbial_phenotype
endospore external encapsulating structure
GO:0043591
An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore.
GO:0043591
OMP:DAS
endospore exosporium phenotype
2015-06-04T16:22:54Z
An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid.
GO:0043592
OMP:0007230
dsiegele
microbial_phenotype
exosporium
GO:0043592
An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid.
GO:0043592
OMP:DAS
presence of an exosporium
2015-06-04T16:29:52Z
An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore.
OMP:0007231
dsiegele
microbial_phenotype
An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore.
OMP:DAS
absence of an exosporium
2015-06-04T16:29:52Z
An exosporium phenotype where the mature endospore lacks an exosporium.
OMP:0007232
dsiegele
microbial_phenotype
An exosporium phenotype where the mature endospore lacks an exosporium.
OMP:DAS
absence of binary fission
2015-06-20T18:21:53Z
A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission.
OMP:0007233
microbial_phenotype
siegele
A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission.
OMP:JCH
absence of budding
2015-06-20T18:24:03Z
A budding phenotype where an organism lacks to the ability to multiply by the process of budding.
OMP:0007234
microbial_phenotype
siegele
A budding phenotype where an organism lacks to the ability to multiply by the process of budding.
OMP:JCH
absence of multiple fission
2015-06-20T18:25:24Z
A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission.
OMP:0007235
microbial_phenotype
siegele
A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission.
OMP:JCH
absence of asexual sporulation
2015-06-20T18:26:28Z
An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores.
OMP:0007236
microbial_phenotype
siegele
An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores.
OMP:JCH
bacteriophage sensitivity phenotype
2015-06-29T17:35:29Z
A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage.
OMP:0007237
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage.
OMP:DAS
sensitive to bacteriophage
2015-06-29T17:56:42Z
A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage.
OMP:0007238
microbial_phenotype
siegele
A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage.
OMP:DAS
not sensitive to bacteriophage
2015-06-29T18:02:50Z
A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage.
OMP:0007239
bacteriophage resistance
microbial_phenotype
siegele
A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage.
OMP:DAS
decreased bacteriophage absorption
2015-06-29T18:05:20Z
An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage.
OMP:0007240
microbial_phenotype
siegele
An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage.
OMP:DAS
post-injection defect
2015-06-29T18:09:11Z
An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection.
OMP:0007241
microbial_phenotype
siegele
An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection.
OMP:DAS
altered host-virus interaction
2015-07-04T00:13:56Z
A host-virus interaction phenotype that is altered relative to a designated control.
OMP:0007242
microbial_phenotype
siegele
A host-virus interaction phenotype that is altered relative to a designated control.
OMP:DAS
altered bacteriophage sensitivity
2015-07-04T00:16:40Z
A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control.
OMP:0007243
microbial_phenotype
siegele
A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control.
OMP:DAS
decreased sensitivity to bacteriophage
2015-07-04T00:18:12Z
An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control.
OMP:0007244
microbial_phenotype
siegele
An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control.
OMP:DAS
abolished sensitivity to bacteriophage
2015-07-04T00:20:54Z
A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished.
OMP:0007245
microbial_phenotype
siegele
A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished.
OMP:DAS
not resistant to a chemical
2015-07-16T00:36:34Z
A chemical resistance phenotype where a microbe is not resistant to a chemical.
OMP:0007246
microbial_phenotype
siegele
A chemical resistance phenotype where a microbe is not resistant to a chemical.
OMP:DAS
resistant to a chemical
2015-07-16T00:36:34Z
A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical.
OMP:0007247
microbial_phenotype
siegele
A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical.
OMP:DAS
altered resistance to chemical
2015-07-16T00:36:34Z
A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control.
OMP:0007248
altered chemical sensitivity
microbial_phenotype
siegele
A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control.
OMP:DAS
decreased resistance to a chemical
increased sensitivity to a chemical
2015-07-16T00:42:17Z
An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control.
OMP:0007249
microbial_phenotype
siegele
An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control.
OMP:DAS
increased resistance to a chemical
2015-07-16T00:42:17Z
An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control.
OMP:0007250
decreased sensitivity to a chemical
microbial_phenotype
siegele
An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control.
OMP:DAS
abolished chemical sensitivity
2015-07-16T00:42:17Z
An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished.
Chemical sensitivity phenotype and its child terms were renamed as chemical resistance phenotypes to be consistent with other branches of OMP. Other terms in this branch were redefined, but this term was made obsolete and replaced by OMP:0007250 ! increased resistance to a chemical.
When using OMP:0007250 for annotations enter the database identifier for the specific chemical in the Annotation Extension field.
OMP:0007250
OMP:0007251
microbial_phenotype
siegele
true
An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished.
OMP:DAS
colonization of a host phenotype
2015-07-31T13:22:28Z
A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism.
OMP:0007252
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism.
OMP:DAS
presence of colonization of a host
2015-07-31T13:25:08Z
A colonization of a host phenotype where a microbe is able to colonize a host organism.
OMP:0007253
microbial_phenotype
siegele
A colonization of a host phenotype where a microbe is able to colonize a host organism.
OMP:JG
absence of colonization of a host
2015-07-31T13:25:08Z
A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism.
OMP:0007254
microbial_phenotype
siegele
A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism.
OMP:JG
altered colonization of a host
2015-07-31T13:25:08Z
A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
OMP:0007255
microbial_phenotype
siegele
A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
OMP:DAS
increased colonization of a host
2015-07-31T13:26:07Z
An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
OMP:0007256
microbial_phenotype
siegele
An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
OMP:DAS
decreased colonization of a host
2015-07-31T13:26:07Z
An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
OMP:0007257
microbial_phenotype
siegele
An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
OMP:DAS
abolished colonization of a host
2015-07-31T13:26:07Z
A decreased colonization of a host phenotype where colonization of a host organism is abolished.
OMP:0007258
microbial_phenotype
siegele
A decreased colonization of a host phenotype where colonization of a host organism is abolished.
OMP:DAS
microbial cell viability phenotype
2015-07-31T13:47:33Z
A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions.
OMP:0007259
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
cell viability
microbial_phenotype
siegele
A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions.
FYPO:0000004
OMP:DAS
FYPO:0000004
cell viability
altered microbial cell viability
2015-07-31T14:00:54Z
A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control.
OMP:0007260
microbial_phenotype
siegele
A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control.
OMP:DAS
decreased cell viability
2015-07-31T14:00:54Z
An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control.
OMP:0007261
microbial_phenotype
siegele
An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control.
OMP:DAS
increased cell viability
2015-07-31T14:00:54Z
An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control.
OMP:0007262
microbial_phenotype
siegele
An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control.
OMP:DAS
viable but nonculturable cell
2015-07-31T14:00:54Z
OMP:0007263
microbial_phenotype
siegele
drug-dependent population growth phenotype
2015-08-03T14:04:45Z
A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium.
OMP:0007264
microbial_phenotype
siegele
A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium.
OMP:DAS
presence of drug-dependent population growth
2015-08-03T14:07:51Z
A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium.
OMP:0007265
microbial_phenotype
siegele
A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium.
OMP:DAS
absence of drug-dependent population growth
2015-08-03T14:07:51Z
A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium.
OMP:0007266
microbial_phenotype
siegele
A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium.
OMP:DAS
altered drug-dependence of population growth
2015-08-03T14:07:51Z
A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control.
OMP:0007267
microbial_phenotype
siegele
A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control.
OMP:REF
increased drug-dependence of population growth
2015-08-03T14:07:51Z
An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control.
OMP:0007268
microbial_phenotype
siegele
An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control.
OMP:DAS
decreased drug-dependence of population growth
2015-08-03T14:07:51Z
An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control.
OMP:0007269
microbial_phenotype
siegele
An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control.
OMP:DAS
abolished drug-dependence of population growth
2015-08-03T14:07:51Z
A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished.
OMP:0007270
microbial_phenotype
siegele
A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished.
OMP:DAS
increased sensitivity to bacteriophage
2015-08-11T16:54:13Z
An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control.
OMP:0007271
microbial_phenotype
siegele
An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control.
OMP:DAS
decreased absorption of bacteriocin
2015-09-24T20:41:51Z
An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells.
OMP:0007272
microbial_phenotype
siegele
An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells.
OMP:DAS
bacteriocin tolerant
2015-09-24T20:45:00Z
An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects.
OMP:0007273
colicin tolerant
microbial_phenotype
siegele
An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects.
OMP:DAS
PMID:4860908
mixotrophic carbon source utilization
2015-09-28T15:12:37Z
A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode.
OMP:0007274
microbial_phenotype
mixotrophy
siegele
A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode.
OMP:DAS
altered frequency of reversing direction of flagellar rotation
2015-10-17T19:56:02Z
An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control.
OMP:0007275
microbial_phenotype
siegele
An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control.
OMP:DAS
increased threshold for positive chemotaxis
2015-11-07T13:32:21Z
A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control.
OMP:0007276
microbial_phenotype
siegele
A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control.
OMP:DAS
cell wall morphology phenotype
2015-11-11T15:41:37Z
OMP:0005233
OMP:0007277
This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
microbial_phenotype
siegele
true
GO:0005618
OMP:DAS
This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
disproportionation of thiosulfate
2015-11-12T00:46:14Z
A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide.
Disproportionation of thiosulfate is the reaction: thiosulfate + H2O --> SO42- + HS- + H+.
OMP:0007278
microbial_phenotype
siegele
A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide.
OMP:DAS
PMID:10919837
altered protein activity phenotype
2016-01-07T22:48:43Z
A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control.
OMP:0007279
microbial_phenotype
siegele
A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control.
OMP:DAS
presence of enzymatic activity
2016-01-09T18:04:12Z
An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism.
OMP:0007280
microbial_phenotype
siegele
An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism.
OMP:DAS
absence of enzymatic activity
2016-01-09T18:05:38Z
An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism.
OMP:0007281
microbial_phenotype
siegele
An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism.
OMP:DAS
presence of UV-radiation resistance
2016-01-09T18:37:25Z
A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation.
OMP:0007282
microbial_phenotype
siegele
A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation.
OMP:DAS
absence of UV radiation resistance
2016-01-09T18:39:51Z
A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation.
OMP:0007283
microbial_phenotype
siegele
A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation.
OMP:DAS
presence of virulence
2016-01-09T18:47:01Z
A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host).
OMP:0007284
microbial_phenotype
siegele
A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host).
OMP:DAS
laccase activity phenotype
2016-01-10T00:30:53Z
A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor.
OMP:0007285
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Laccase is involved in the synthesis of fungal melanin.
benzenediol:oxygen oxidoreductase activity
microbial_phenotype
siegele
A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor.
OMP:DAS
EC:1.10.3.2
benzenediol:oxygen oxidoreductase activity
presence of laccase activity
2016-01-10T00:36:59Z
A laccase phenotype where an organism exhibits laccase activity.
OMP:0007286
microbial_phenotype
siegele
A laccase phenotype where an organism exhibits laccase activity.
OMP:DAS
absence of laccase activity
2016-01-10T00:37:17Z
A laccase phenotype where an organism doesn't exhibit laccase activity.
OMP:0007287
microbial_phenotype
siegele
A laccase phenotype where an organism doesn't exhibit laccase activity.
OMP:DAS
altered laccase activity
2016-01-10T00:37:57Z
A laccase activity phenotype where laccase activity is altered relative to a designated control.
OMP:0007288
microbial_phenotype
siegele
A laccase activity phenotype where laccase activity is altered relative to a designated control.
OMP:DAS
increased laccase activity
2016-01-10T00:45:01Z
An altered laccase activity phenotype where laccase activity is increased relative to a designated control.
OMP:0007289
microbial_phenotype
siegele
An altered laccase activity phenotype where laccase activity is increased relative to a designated control.
OMP:DAS
decreased laccase activity
2016-01-10T00:45:01Z
An altered laccase activity phenotype where laccase activity is decreased relative to a designated control.
OMP:0007290
microbial_phenotype
siegele
An altered laccase activity phenotype where laccase activity is decreased relative to a designated control.
OMP:DAS
abolished laccase activity
2016-01-10T00:45:01Z
A decreased laccase activity phenotype where laccase activity is abolished.
OMP:0007291
microbial_phenotype
siegele
A decreased laccase activity phenotype where laccase activity is abolished.
OMP:DAS
altered spore germination efficiency
2016-01-10T00:55:26Z
A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control.
OMP:0007292
microbial_phenotype
siegele
A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control.
OMP:DAS
increased spore germination efficiency
2016-01-10T00:57:49Z
A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control.
OMP:0007293
microbial_phenotype
siegele
A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control.
OMP:DAS
diazonium blue B staining phenotype
2016-01-29T22:48:37Z
A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts.
APO:0000061
OMP:0007294
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
fast blue B staining phenotype
microbial_phenotype
siegele
A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts.
OMP:DAS
PMID:60081
doi:10.1099/00207713-31-2-204
CHEBI:87629
fast blue B staining phenotype
colony color
APO:0000061
presence of diazonium blue B staining
2016-01-29T23:13:37Z
A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B.
OMP:0007295
microbial_phenotype
siegele
A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B.
OMP:DAS
absence of diazonium blue B staining
2016-01-29T23:13:37Z
A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B.
OMP:0007296
microbial_phenotype
siegele
A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B.
OMP:DAS
altered diazonium blue B staining
2016-01-29T23:13:37Z
A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control.
OMP:0007297
microbial_phenotype
siegele
A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control.
OMP:DAS
presence of acid-fast stain
2016-01-29T23:18:08Z
An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
OMP:0007298
microbial_phenotype
siegele
An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
OMP:DAS
absence of acid-fast stain
2016-01-29T23:19:38Z
An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
OMP:0007299
microbial_phenotype
non-acid-fast staining
siegele
An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
OMP:DAS
altered acid-fast stain
2016-01-29T23:29:27Z
An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control.
OMP:0007300
microbial_phenotype
siegele
An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control.
OMP:DAS
decreased diazonium blue B staining
2016-01-30T00:33:19Z
An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control.
OMP:0007301
microbial_phenotype
siegele
An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control.
OMP:DAS
increased diazonium blue B staining
2016-01-30T00:33:19Z
An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control.
OMP:0007302
microbial_phenotype
siegele
An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control.
OMP:DAS
abolished diazonium blue B staining
2016-01-30T13:32:56Z
A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished.
OMP:0007303
microbial_phenotype
siegele
A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished.
OMP:DAS
altered cell staining phenotype
2016-01-31T00:30:08Z
A cell staining phenotype that is altered relative to a designated control.
OMP:0007304
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell staining phenotype that is altered relative to a designated control.
OMP:DAS
altered utilization of inorganic nitrogen source
2016-01-31T00:41:26Z
An inorganic nitrogen source utilization phenotype that is altered relative to a designated control.
OMP:0007305
microbial_phenotype
siegele
An inorganic nitrogen source utilization phenotype that is altered relative to a designated control.
OMP:DAS
presence of inorganic nitrogen source utilization
2016-01-31T00:43:21Z
An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen.
OMP:0007306
microbial_phenotype
siegele
An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen.
OMP:DAS
absence of inorganic nitrogen utilization
2016-01-31T00:44:37Z
An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen.
OMP:0007307
microbial_phenotype
siegele
An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen.
OMP:DAS
cell death phenotype
2016-02-02T14:15:49Z
A biological process phenotype that relates to the cessation of life of an individual cell.
APO:0000312
OMP:0007308
dsiegele
microbial_phenotype
A biological process phenotype that relates to the cessation of life of an individual cell.
APO:0000312
OMP:DAS
cell death
APO:0000312
apoptosis phenotype
2016-02-02T14:27:37Z
An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process.
GO:0006915
OMP:0007309
dsiegele
microbial_phenotype
apoptotic process
GO:0006915
APO:0000155
An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process.
OMP:DAS
absence of apoptosis
2016-02-02T14:31:24Z
An apoptosis phenotype where a cell or cells cannot undergo apoptosis.
OMP:0007310
dsiegele
microbial_phenotype
An apoptosis phenotype where a cell or cells cannot undergo apoptosis.
OMP:DAS
presence of apoptosis
2016-02-02T14:31:24Z
An apoptosis phenotype where a cell or cells can undergo apoptosis.
OMP:0007311
dsiegele
microbial_phenotype
An apoptosis phenotype where a cell or cells can undergo apoptosis.
OMP:DAS
altered apoptosis
2016-02-02T14:31:24Z
An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control.
OMP:0007312
dsiegele
microbial_phenotype
An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control.
OMP:DAS
decreased apoptosis
2016-02-02T14:58:50Z
An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control.
OMP:0007313
dsiegele
microbial_phenotype
An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control.
OMP:DAS
increased apoptosis
2016-02-02T14:58:50Z
An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control.
OMP:0007314
dsiegele
microbial_phenotype
An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control.
OMP:DAS
population morphology phenotype
2016-02-05T20:20:28Z
A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm.
OMP:0007315
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm.
OMP:DAS
abolished superoxide dismutase activity
2016-02-23T02:09:35Z
A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished.
OMP:0007316
microbial_phenotype
siegele
A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished.
OMP:DAS
abolished protein kinase A activity
2016-02-23T02:13:30Z
A decreased protein kinase A activity phenotype where the activity is abolished.
OMP:0007317
microbial_phenotype
siegele
A decreased protein kinase A activity phenotype where the activity is abolished.
OMP:DAS
abolished ferric reductase activity
2016-02-23T02:16:03Z
A decreased ferric reductase activity phenotype where ferric reductase activity is abolished.
OMP:0007318
microbial_phenotype
siegele
A decreased ferric reductase activity phenotype where ferric reductase activity is abolished.
OMP:DAS
mucoid colony surface phenotype
2016-02-25T18:35:28Z
A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony.
OMP:0007319
microbial_phenotype
siegele
A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony.
OMP:DAS
absence of mucoid colonies
2016-02-25T18:43:57Z
A mucoid colony phenotype where the organism forms nonmucoid colonies.
OMP:0007320
microbial_phenotype
siegele
A mucoid colony phenotype where the organism forms nonmucoid colonies.
OMP:DAS
altered mucoid colony phenotype
2016-02-25T18:44:52Z
A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control.
OMP:0007321
microbial_phenotype
siegele
A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control.
OMP:DAS
increased mucoidy
2016-02-25T18:46:37Z
OMP:0007322
microbial_phenotype
siegele
decreased mucoidy
2016-02-25T18:46:37Z
An altered mucoid colony pheotype where colonies are less mucoid than a designated control.
OMP:0007323
microbial_phenotype
siegele
An altered mucoid colony pheotype where colonies are less mucoid than a designated control.
OMP:DAS
abolished mucoidy
2016-02-25T18:46:37Z
A decreased mucoidy phenotype where mucoid colonies are abolished.
OMP:0007324
microbial_phenotype
siegele
A decreased mucoidy phenotype where mucoid colonies are abolished.
OMP:DAS
absence of inorganic sulfur utilization
2016-02-25T22:42:30Z
A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur.
OMP:0007325
microbial_phenotype
siegele
A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur.
OMP:DAS
absence of organic sulfur utilization
2016-02-25T22:42:30Z
A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur.
OMP:0007326
microbial_phenotype
siegele
A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur.
OMP:DAS
bud morphology phenotype
2016-05-21T22:43:21Z
A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding.
APO:0000212
GO:0005933
OMP:0007327
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding.
GO:0005933
OMP:DAS
cellular bud
GO:0005933
bud morphology
APO:0000212
altered bud morphology
2016-05-21T22:52:05Z
A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control.
OMP:0007328
microbial_phenotype
siegele
A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control.
OMP:DAS
bud neck morphology
2016-05-21T22:59:29Z
A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell.
APO:0000056
OMP:0007329
microbial_phenotype
siegele
A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell.
GO:0005935
OMP:DAS
bud neck morphology
APO:0000056
altered bud neck morphology
2016-05-21T23:02:47Z
A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control.
OMP:0007330
microbial_phenotype
siegele
A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control.
OMP:DAS
abolished apoptosis
2016-05-26T23:29:02Z
A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished.
OMP:0007331
microbial_phenotype
siegele
A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished.
OMP:DAS
cellular process phenotype
2016-05-27T23:03:44Z
A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell.
FYPO:0000114
OMP:0007332
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell.
GO:0009987
OMP:DAS
cellular process phenotype
FYPO:0000114
autophagy phenotype
2016-05-27T23:08:08Z
A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm.
OMP:0007333
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
autolysosome formation
autophagosome formation
microbial_phenotype
siegele
A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm.
GO:0006914
OMP:DAS
autophagic vesicle formation phenotype
2016-05-27T23:09:01Z
An autophagy phenotype related to the formation of autophagic vesicles.
OMP:0007334
microbial_phenotype
siegele
An autophagy phenotype related to the formation of autophagic vesicles.
OMP:DAS
altered autophagic vesicle formation
2016-05-27T23:09:26Z
An autophagic vesicle formation phenotype that is altered relative to a designated control.
OMP:0007335
microbial_phenotype
siegele
An autophagic vesicle formation phenotype that is altered relative to a designated control.
OMP:DAS
increased autophagic vesicle formation
2016-05-27T23:10:53Z
An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control.
OMP:0007336
microbial_phenotype
siegele
An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control.
OMP:DAS
decreased autophagic vesicle formation
2016-05-27T23:10:53Z
An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control.
OMP:0007337
microbial_phenotype
siegele
An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control.
OMP:DAS
abolished autophagic vesicle formation
2016-05-27T23:10:53Z
A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished.
OMP:0007338
microbial_phenotype
siegele
A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished.
OMP:DAS
nuclear morphology phenotype
2016-05-28T02:18:45Z
A cell morphology phenotype related to the size, shape, or appearance of the nucleus.
APO:0000057
OMP:0007339
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell morphology phenotype related to the size, shape, or appearance of the nucleus.
OMP:DAS
nuclear morphology
APO:0000057
altered nuclear morphology
2016-05-28T02:21:05Z
A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control.
OMP:0007340
microbial_phenotype
siegele
A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control.
OMP:DAS
altered cell death
2016-05-28T02:24:07Z
A cell death phenotype where death of a cell or cells is altered relative to a designated control.
OMP:0007341
microbial_phenotype
siegele
A cell death phenotype where death of a cell or cells is altered relative to a designated control.
OMP:DAS
altered cellular process
2016-05-28T02:25:03Z
A cellular process phenotype where a cellular process is altered relative to a designated control.
OMP:0007342
microbial_phenotype
siegele
A cellular process phenotype where a cellular process is altered relative to a designated control.
OMP:DAS
altered autophagy
2016-05-28T02:28:04Z
An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control.
OMP:0007343
microbial_phenotype
siegele
An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control.
OMP:DAS
nuclear position phenotype
2016-05-28T02:34:23Z
A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells.
OMP:0007344
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells.
APO:0000118
OMP:DAS
altered nuclear position
2016-05-28T02:36:59Z
A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control.
OMP:0007345
microbial_phenotype
siegele
A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control.
OMP:DAS
protein secretion phenotype
2016-06-08T17:02:00Z
A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell.
OMP:0007346
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
exocytosis
microbial_phenotype
protein secretion
siegele
APO:0000078
protein secretion
A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell.
GO:0009306
OMP:DAS
altered protein secretion
2016-06-09T22:42:13Z
A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control.
OMP:0007347
microbial_phenotype
siegele
A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control.
OMP:DAS
increased protein secretion
2016-06-09T22:43:50Z
An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control.
FYPO:0000539
OMP:0007348
microbial_phenotype
siegele
An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control.
OMP:DAS
increased protein secretion
FYPO:0000539
decreased protein secretion
2016-06-09T22:47:42Z
An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control.
FYPO:0000538
OMP:0007349
microbial_phenotype
siegele
An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control.
OMP:DAS
decreased protein secretion
FYPO:0000538
abolished protein secretion
2016-06-09T22:48:16Z
A decreased protein secretion phenotype where the process of protein secretion is abolished.
FYPO:0000537
OMP:0007350
microbial_phenotype
siegele
abolished protein secretion
FYPO:0000537
A decreased protein secretion phenotype where the process of protein secretion is abolished.
OMP:DAS
altered biological process
2016-06-09T22:50:27Z
A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control.
OMP:0007351
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control.
OMP:DAS
altered cell development
2016-06-09T22:58:20Z
A cell development phenotype where development of a cell or cells is altered relative to a designated control.
OMP:0007352
microbial_phenotype
siegele
A cell development phenotype where development of a cell or cells is altered relative to a designated control.
OMP:DAS
altered spore germination
2016-06-09T23:07:17Z
A spore germination phenotype where germination of a spore or spores is altered relative to a designated control.
OMP:0007353
microbial_phenotype
siegele
A spore germination phenotype where germination of a spore or spores is altered relative to a designated control.
OMP:DAS
altered amino acid requirement
2016-06-16T15:56:40Z
An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control.
OMP:0007354
dsiegele
microbial_phenotype
An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control.
OMP:DAS
abolished amino acid requirement
2016-06-16T16:20:47Z
A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished.
OMP:0007355
dsiegele
microbial_phenotype
A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished.
OMP:DAS
quinone resistance phenotype
2016-06-17T01:16:57Z
An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds.
CHEBI:36141
OMP:0007356
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
mitomycin resistance phenotype
siegele
CHEBI:25357
mitomycin resistance phenotype
An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds.
CHEBI:36141
OMP:DAS
quinone
CHEBI:36141
altered cellular component phenotype
2016-06-20T16:01:53Z
A cellular component phenotype where a quality of a cellular component is altered relative to a designated control.
OMP:0007357
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
A cellular component phenotype where a quality of a cellular component is altered relative to a designated control.
OMP:DAS
nucleoside resistance phenotype
2016-06-20T16:23:54Z
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.
OMP:0007358
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
azidothymidine resistance phenotype
dsiegele
microbial_phenotype
puromycin resistance phenotype
tunicamycin resistance phenotype
zidovudine resistance phenotype
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.
CHEBI:33838
OMP:DAS
CHEBI:29699
tunicamycin resistance phenotype
CHEBI:10110
zidovudine resistance phenotype
CHEBI:17939
puromycin resistance phenotype
CHEBI:10110
azidothymidine resistance phenotype
resistant to a nucleoside
2016-06-20T16:27:19Z
A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside.
OMP:0007359
dsiegele
microbial_phenotype
A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside.
OMP:DAS
not resistant to a nucleoside
2016-06-20T16:27:19Z
A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside.
OMP:0007360
dsiegele
microbial_phenotype
A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside.
OMP:DAS
altered resistance to a nucleoside
2016-06-20T16:27:19Z
A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control.
OMP:0007361
dsiegele
microbial_phenotype
A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control.
OMP:DAS
Increased resistance to a nucleoside
2016-06-20T16:40:21Z
An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control.
OMP:0007362
dsiegele
microbial_phenotype
An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control.
OMP:DAS
decreased resistance to a nucleoside
2016-06-20T16:40:21Z
An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control.
OMP:0007363
dsiegele
microbial_phenotype
An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control.
OMP:DAS
abolished resistance to a nucleoside
2016-06-20T16:40:21Z
An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished.
OMP:0007364
dsiegele
microbial_phenotype
An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished.
OMP:DAS
acridine antimicrobial agent resistance phenotype
2016-06-21T01:11:35Z
An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom.
OMP:0007365
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
acridine orange
acriflavine resistance phenotype
acriflavinium chloride
microbial_phenotype
siegele
An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom.
CHEBI:36420
OMP:DAS
CHEBI:74728
acriflavinium chloride
CHEBI:51739
acridine orange
resistant to an acridine
2016-06-21T01:17:16Z
An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine.
OMP:0007366
microbial_phenotype
siegele
An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine.
OMP:DAS
not resistant to an acridine
2016-06-21T01:17:16Z
An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine.
OMP:0007367
microbial_phenotype
siegele
An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine.
OMP:DAS
altered resistance to an acridine
2016-06-21T01:17:16Z
An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control.
OMP:0007368
microbial_phenotype
siegele
An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control.
OMP:DAS
increased resistance to an acridine
2016-06-21T01:17:16Z
An altered resistance to an acridine phenotype where resistance is increased relative to a designated control.
OMP:0007369
microbial_phenotype
siegele
An altered resistance to an acridine phenotype where resistance is increased relative to a designated control.
OMP:DAS
decreased resistance to an acridine
2016-06-21T01:17:16Z
An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control.
OMP:0007370
microbial_phenotype
siegele
An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control.
OMP:DAS
abolished resistance to an acridine
2016-06-21T01:17:16Z
A decreased resistance to an acridine phenotype where resistance abolished.
OMP:0007371
microbial_phenotype
siegele
A decreased resistance to an acridine phenotype where resistance abolished.
OMP:DAS
alkylating agent resistance phenotype
2016-06-22T16:41:33Z
A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning.
Hydroxyurea
MMS
OMP:0007372
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
alkylating agent sensitivity phenotype
dsiegele
methyl methanesulfonate
microbial_phenotype
CHEBI:25255
methyl methanesulfonate
A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning.
CHEBI:22333
OMP:DAS
CHEBI:25255
MMS
CHEBI:44423
Hydroxyurea
resistant to alkylating agent
2016-06-23T15:27:23Z
An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent.
OMP:0007373
dsiegele
microbial_phenotype
An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent.
OMP:das
not resistant to alkylating agent
2016-06-23T15:27:23Z
An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent.
OMP:0007374
dsiegele
microbial_phenotype
An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent.
OMP:DAS
altered resistance to an alkylating agent
2016-06-23T15:27:23Z
An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control.
OMP:0007375
dsiegele
microbial_phenotype
An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control.
OMP:DAS
increased resistance to alkylating agent
2016-06-23T15:27:23Z
An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control.
OMP:0007376
decreased sensitivity to an alkylating agent
dsiegele
microbial_phenotype
An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control.
OMP:DAS
decreased resistance to alkylating agent
2016-06-23T15:27:23Z
An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control.
OMP:0007377
dsiegele
increased sensitivity to an alkylating agent
microbial_phenotype
An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control.
OMP:DAS
abolished resistance to alkylating agent
2016-06-23T15:27:23Z
An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished.
OMP:0007378
dsiegele
microbial_phenotype
An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished.
OMP:DAS
pyrimidine requirement
2016-06-23T15:57:42Z
A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base.
OMP:0007379
dsiegele
microbial_phenotype
uracil requirement
A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base.
OMP:DAS
CHEBI:17568
uracil requirement
benzamides resistance phenotype
2016-06-26T14:45:16Z
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent.
OMP:0007380
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
benzamide resistance phenotype
benzamides sensitivity phenotype
microbial_phenotype
siegele
CHEBI:22702
benzamides sensitivity phenotype
CHEBI:28179
benzamide resistance phenotype
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent.
CHEBI:22702
OMP:DAS
resistant to benzamides
2016-06-26T14:45:16Z
A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide.
OMP:0007381
microbial_phenotype
siegele
A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide.
OMP:DAS
not resistant to benzamides
2016-06-26T14:45:16Z
A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide.
OMP:0007382
microbial_phenotype
siegele
A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide.
OMP:DAS
altered resistance to benzamides
2016-06-26T14:45:16Z
A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control.
OMP:0007383
microbial_phenotype
siegele
A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control.
OMP:DAS
increased resistance to a benzamide
2016-06-26T14:45:16Z
An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control.
OMP:0007384
microbial_phenotype
siegele
An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control.
OMP:DAS
decreased resistance benzamides
2016-06-26T14:45:16Z
An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control.
OMP:0007385
microbial_phenotype
siegele
An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control.
OMP:DAS
abolished resistance to benzamides
2016-06-26T14:45:16Z
A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished.
OMP:0007386
microbial_phenotype
siegele
A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished.
OMP:DAS
altered pyrimidine requirement
2016-06-29T15:45:39Z
An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control.
OMP:0007387
dsiegele
microbial_phenotype
An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control.
OMP:DAS
increased pyrimidine requirement
2016-06-29T15:47:23Z
An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
OMP:0007388
dsiegele
microbial_phenotype
An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
OMP:DAS
decreased pyrimidine requirement
2016-06-29T15:47:23Z
An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
OMP:0007389
dsiegele
microbial_phenotype
An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
OMP:DAS
abolished pyrimidine requirement
2016-06-29T15:47:23Z
A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished.
OMP:0007390
dsiegele
microbial_phenotype
A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished.
OMP:DAS
abolished cell viability
2016-06-29T19:15:29Z
A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions.
OMP:0007391
inviable
microbial_phenotype
siegele
APO:0000112
inviable
A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions.
OMP:DAS
presence of microbial cell viability
2016-07-01T22:15:10Z
A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions.
OMP:0007392
microbial_phenotype
siegele
A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions.
FYPO:0000124
OMP:DAS
absence of microbial cell viability
2016-07-01T22:15:10Z
A cell viability phenotype where a microbial cell is not viable under the specified conditions.
OMP:0007393
inviable
inviable cell
microbial_phenotype
siegele
A cell viability phenotype where a microbial cell is not viable under the specified conditions.
FYPO:0000049
OMP:DAS
FYPO:0000049
inviable cell
APO:0000112
inviable
lethality phenotype
2016-07-06T13:10:19Z
A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host.
OMP:0007394
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host.
OMP:DAS
presence of lethality
2016-07-06T13:12:26Z
A lethality phenotype where infection by a microbe can cause death of the host.
OMP:0007395
microbial_phenotype
siegele
A lethality phenotype where infection by a microbe can cause death of the host.
OMP:DAS
absence of lethality
2016-07-06T13:12:26Z
A lethality phenotype where infection by a microbe does not cause death of the host.
OMP:0007396
microbial_phenotype
siegele
A lethality phenotype where infection by a microbe does not cause death of the host.
OMP:DAS
altered lethality
2016-07-06T13:12:26Z
A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control.
OMP:0007397
microbial_phenotype
siegele
A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control.
OMP:DAS
decreased lethality
2016-07-06T13:12:26Z
An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control.
OMP:0007398
microbial_phenotype
siegele
An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control.
OMP:DAS
abolished lethality
2016-07-06T13:12:26Z
A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished.
OMP:0007399
microbial_phenotype
siegele
A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished.
OMP:DAS
increased lethality
2016-07-06T13:12:26Z
An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control.
OMP:0007400
microbial_phenotype
siegele
An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control.
OMP:DAS
ascospore formation phenotype
2016-07-06T14:29:13Z
A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
OMP:0007401
microbial_phenotype
siegele
A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
GO:0030437
OMP:DAS
presence of ascospore formation
2016-07-06T14:32:46Z
APO:0000041
An ascospore formation phenotype where a microbe has the ability to form ascospores.
FYPO:0000590
OMP:0007402
microbial_phenotype
siegele
normal sporulation
FYPO:0000590
An ascospore formation phenotype where a microbe has the ability to form ascospores.
OMP:DAS
sporulation
APO:0000041
altered microbe-host interaction
2016-07-09T13:22:30Z
A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control.
OMP:0007403
microbial_phenotype
siegele
A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control.
OMP:DAS
abolished resistance to killing by host
2016-07-09T13:24:32Z
A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished.
OMP:0007404
microbial_phenotype
siegele
A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished.
OMP:DAS
sexual sporulation phenotype
2016-07-09T14:14:51Z
A sporulation phenotype related to the formation of spores derived from the products of meiosis.
GO:0034293
OMP:0007405
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
sexual sporulation
GO:0034293
A sporulation phenotype related to the formation of spores derived from the products of meiosis.
GO:0034293
OMP:DAS
sexual reproduction phenotype
2016-07-09T14:24:56Z
A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
GO:0019953
OMP:0007406
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
GO:0019953
OMP:DAS
absence of ascospore formation
2016-07-09T14:47:12Z
An ascospore formation phenotype where a microbe lacks the ability to form ascospores.
OMP:0007407
microbial_phenotype
siegele
An ascospore formation phenotype where a microbe lacks the ability to form ascospores.
OMP:DAS
altered ascospore formation
2016-07-09T14:51:28Z
An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control.
OMP:0007408
abnormal sporulation
microbial_phenotype
siegele
FYPO:0000121
abnormal sporulation
An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control.
OMP:DAS
akinete morphology phenotype
2016-07-13T18:36:45Z
A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria.
OMP:0007409
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Akinetes are typically more resistant to dessication and other environmental stresses than vegetative cells.
microbial_phenotype
siegele
A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria.
OMP:DAS
PMID:11948167
doi:10.1046/j.1469-8137.1999.00505.x
altered akinete morphology
2016-07-13T18:43:01Z
An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control.
OMP:0007410
microbial_phenotype
siegele
An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control.
OMP:DAS
altered spore morphology
2016-07-13T18:45:02Z
A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control.
OMP:0007411
microbial_phenotype
siegele
A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control.
OMP:DAS
mating phenotype
2016-07-14T16:21:02Z
A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types.
FYPO:0000301
OMP:0007412
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
An example of conjugation with cellular fusion is found in Saccharomyces cerevisiae.
dsiegele
mating response
microbial_phenotype
APO:0000032
mating response
A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types.
GO:0000747
OMP:DAS
mating phenotype
FYPO:0000301
conjugation phenotype
2016-07-14T16:25:26Z
A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms.
GO:0000746
OMP:0007413
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
An example of conjugation would be the transfer of a conjugative plasmid from a donor bacterium to a recipient bacterium.
dsiegele
microbial_phenotype
conjugation
GO:0000746
A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms.
GO:0000746
OMP:DAS
absence of conjugation
2016-07-14T16:32:10Z
A conjugation phenotype where mating does not occur through the process of conjugation.
OMP:0007414
dsiegele
microbial_phenotype
A conjugation phenotype where mating does not occur through the process of conjugation.
OMP:DAS
presence of conjugation
2016-07-14T16:32:10Z
A conjugation phenotype where mating occurs through the process of conjugation.
OMP:0007415
dsiegele
microbial_phenotype
A conjugation phenotype where mating occurs through the process of conjugation.
OMP:DAS
altered conjugation
2016-07-14T16:32:10Z
A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control.
OMP:0007416
dsiegele
microbial_phenotype
A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control.
OMP:DAS
decreased conjugation
2016-07-14T16:36:35Z
An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control.
OMP:0007417
dsiegele
microbial_phenotype
An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control.
OMP:DAS
increased conjugation
2016-07-14T16:36:35Z
An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control.
OMP:0007418
dsiegele
microbial_phenotype
An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control.
OMP:DAS
abolished conjugation
2016-07-14T16:36:35Z
A decreased conjugation phenotype where conjugation is abolished.
OMP:0007419
dsiegele
microbial_phenotype
A decreased conjugation phenotype where conjugation is abolished.
OMP:DAS
increased akinete formation
2016-07-16T16:44:37Z
An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control.
OMP:0007420
microbial_phenotype
siegele
An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control.
OMP:DAS
decreased akinete formation
2016-07-16T16:44:37Z
An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control.
OMP:0007421
microbial_phenotype
siegele
An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control.
OMP:DAS
abolished akinete formation
2016-07-16T16:44:37Z
A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished.
OMP:0007422
microbial_phenotype
siegele
A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished.
OMP:DAS
decreased budding frequency
2016-07-16T16:56:11Z
A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control.
OMP:0007423
budding index
microbial_phenotype
siegele
A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control.
APO:0000089
OMP:DAS
increased budding frequency
2016-07-16T16:58:06Z
An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control.
OMP:0007424
budding index
microbial_phenotype
siegele
APO:0000089
An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control.
OMP:DAS
absence of schizogeny
2016-07-16T17:12:16Z
A schizogeny phenotype where an organism does not reproduce by the process of schizogeny.
OMP:0007425
microbial_phenotype
siegele
A schizogeny phenotype where an organism does not reproduce by the process of schizogeny.
OMP:DAS
increased schizogeny
2016-07-16T17:14:28Z
An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control.
OMP:0007426
microbial_phenotype
siegele
An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control.
OMP:DAS
decreased schizogeny
2016-07-16T17:14:28Z
An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control.
OMP:0007427
microbial_phenotype
siegele
An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control.
OMP:DAS
abolished schizogeny
2016-07-16T17:14:28Z
A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished.
OMP:0007428
microbial_phenotype
siegele
A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished.
OMP:DAS
increased asexual spore formation
2016-07-19T15:37:25Z
An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control.
OMP:0007429
microbial_phenotype
siegele
An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control.
OMP:DAS
decreased asexual spore formation
2016-07-19T15:37:25Z
An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control.
OMP:0007430
microbial_phenotype
siegele
An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control.
OMP:DAS
abolished asexual spore formation
2016-07-19T15:37:25Z
A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished.
OMP:0007431
microbial_phenotype
siegele
A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished.
OMP:DAS
altered number of flagella
2016-07-20T15:45:00Z
An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control.
OMP:0007432
microbial_phenotype
siegele
An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control.
OMP:DAS
presence of sexual sporulation
2016-07-27T19:29:30Z
A sexual sporulation phenotype where an organism is able to produce sexual spores.
OMP:0007433
microbial_phenotype
siegele
A sexual sporulation phenotype where an organism is able to produce sexual spores.
OMP:DAS
absence of sexual sporulation
2016-07-27T19:29:30Z
A sexual sporulation phenotype where an organism is not able to produce sexual spores.
OMP:0007434
microbial_phenotype
siegele
A sexual sporulation phenotype where an organism is not able to produce sexual spores.
OMP:DAS
altered sexual sporulation
2016-07-27T19:29:30Z
A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control.
OMP:0007435
microbial_phenotype
siegele
A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control.
OMP:DAS
increased sexual sporulation
2016-07-27T19:29:30Z
An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control.
OMP:0007436
microbial_phenotype
siegele
An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control.
OMP:DAS
decreased sexual sporulation
2016-07-27T19:29:30Z
An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control.
OMP:0007437
microbial_phenotype
siegele
An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control.
OMP:DAS
abolished sexual sporulation
2016-07-27T19:29:30Z
A decreased sexual sporulation phenotype where the formation of sexual spores is abolished.
OMP:0007438
microbial_phenotype
siegele
A decreased sexual sporulation phenotype where the formation of sexual spores is abolished.
OMP:DAS
presence of sexual reproduction
2016-07-27T19:32:00Z
A sexual reproduction phenotype where an organism is able to reproduce sexually.
OMP:0007439
microbial_phenotype
siegele
A sexual reproduction phenotype where an organism is able to reproduce sexually.
OMP:DAS
absence of sexual reproduction
2016-07-27T19:32:00Z
A sexual reproduction phenotype where an organism is not able to reproduce sexually.
OMP:0007440
microbial_phenotype
siegele
A sexual reproduction phenotype where an organism is not able to reproduce sexually.
OMP:DAS
altered sexual reproduction
2016-07-27T19:32:00Z
A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control.
OMP:0007441
microbial_phenotype
siegele
A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control.
OMP:DAS
presence of lethality in mice
2016-07-27T22:27:42Z
A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus).
OMP:0007442
microbial_phenotype
siegele
A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus).
OMP:DAS
presence of lethality in immunocompromised mice
2016-07-27T22:27:43Z
A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus).
OMP:0007443
microbial_phenotype
siegele
A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus).
OMP:DAS
absence of lethality in mice
2016-07-27T22:28:22Z
An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus).
OMP:0007444
microbial_phenotype
siegele
An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus).
OMP:DAS
absence of lethality in immunocompromised mice
2016-07-27T22:28:22Z
An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus).
OMP:0007445
microbial_phenotype
siegele
An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus).
OMP:DAS
decreased lethality in mice
2016-07-27T22:29:04Z
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
OMP:0007446
microbial_phenotype
siegele
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
OMP:DAS
decreased lethality in immunocompromised mice
2016-07-27T22:31:31Z
A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control.
OMP:0007447
microbial_phenotype
siegele
A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control.
OMP:DAS
abolished lethality in mice
2016-07-27T22:33:19Z
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished.
OMP:0007448
microbial_phenotype
siegele
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished.
OMP:DAS
abolished lethality in immunocompromised mice
2016-07-27T22:33:19Z
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished.
OMP:0007449
microbial_phenotype
siegele
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished.
OMP:DAS
increased lethality in mice
2016-07-27T22:40:08Z
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
OMP:0007450
microbial_phenotype
siegele
A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
OMP:DAS
increased lethality in immunocompromised mice
2016-07-27T22:40:08Z
A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control.
OMP:0007451
microbial_phenotype
siegele
A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control.
OMP:DAS
presence of survival in macrophage
2016-08-08T14:58:53Z
A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages.
OMP:0007452
dsiegele
microbial_phenotype
A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages.
OMP:DAS
absence of survival in macrophage
2016-08-08T15:15:44Z
OMP:0007453
dsiegele
microbial_phenotype
altered survival in macrophage
2016-08-08T15:16:09Z
OMP:0007454
dsiegele
microbial_phenotype
survival in macrophage phenotype
2016-08-08T15:17:42Z
OMP:0007455
dsiegele
microbial_phenotype
population viability phenotype
2016-08-10T14:51:48Z
A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce.
OMP:0007456
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce.
FYPO:0002057
OMP:DAS
viable cell population
2016-08-10T14:56:12Z
A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions.
FYPO:0002058
OMP:0007457
dsiegele
microbial_phenotype
viable cell population
FYPO:0002058
A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions.
OMP:DAS
nonviable cell population
2016-08-10T14:56:12Z
A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions.
FYPO:0002059
OMP:0007458
dsiegele
inviable cell population
microbial_phenotype
A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions.
FYPO:0002059
OMP:DAS
inviable cell population
FYPO:0002059
altered cell population viability
2016-08-10T14:56:12Z
A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control.
OMP:0007459
dsiegele
microbial_phenotype
A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control.
OMP:DAS
viable vegetative cell population
2016-08-10T15:00:12Z
A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle.
FYPO:0002060
OMP:0007460
dsiegele
microbial_phenotype
viable vegetative cell population
FYPO:0002060
A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle.
FYPO:0002060
OMP:DAS
nonviable vegetative cell population
2016-08-10T15:16:25Z
A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle.
FYPO:0002061
OMP:0007461
dsiegele
inviable vegetative cell population
microbial_phenotype
A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle.
FYPO:0002061
OMP:DAS
inviable vegetative cell population
FYPO:0002061
colonization of invertebrate host phenotype
2016-09-04T21:42:45Z
A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host.
OMP:0007462
colonization of silkworm (Bombyx mori)
microbial_phenotype
siegele
A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host.
OMP:DAS
TaxonomyID:7091
colonization of silkworm (Bombyx mori)
presence of flocculation
2016-09-12T14:35:40Z
A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells.
APO:0000065
OMP:0007463
dsiegele
microbial_phenotype
A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells.
OMP:DAS
flocculation
APO:0000065
absence of flocculation
2016-09-12T14:35:40Z
A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells.
OMP:0007464
dsiegele
microbial_phenotype
A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells.
OMP:DAS
altered flocculation
2016-09-12T14:35:40Z
A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control.
OMP:0007465
dsiegele
microbial_phenotype
A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control.
OMP:JG
increased flocculation
2016-09-12T14:35:40Z
An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control.
OMP:0007466
dsiegele
microbial_phenotype
An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control.
OMP:JG
decreased flocculation
2016-09-12T14:35:40Z
An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control.
OMP:0007467
dsiegele
microbial_phenotype
An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control.
OMP:JG
abolished flocculation
2016-09-12T14:35:40Z
A decreased flocculation phenotype where flocculation is abolished.
OMP:0007468
dsiegele
microbial_phenotype
A decreased flocculation phenotype where flocculation is abolished.
OMP:JG
altered liquid culture morphology
2016-09-12T15:14:45Z
A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control.
OMP:0007469
dsiegele
microbial_phenotype
A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control.
OMP:DAS
altered population morphology
2016-09-12T15:16:19Z
A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control.
OMP:0007470
dsiegele
microbial_phenotype
A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control.
OMP:DAS
increased ascospore formation
2016-09-13T14:35:10Z
An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control.
OMP:0007471
dsiegele
microbial_phenotype
An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control.
OMP:DAS
decreased ascospore formation
2016-09-13T14:35:10Z
An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control.
OMP:0007472
dsiegele
microbial_phenotype
An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control.
OMP:DAS
abolished ascospore formation
2016-09-13T14:35:10Z
An altered ascospore formation phenotype where the formation of ascospores is abolished.
FYPO:0000583
OMP:0007473
dsiegele
microbial_phenotype
abolished sporulation
FYPO:0000583
An altered ascospore formation phenotype where the formation of ascospores is abolished.
OMP:DAS
phenolic antimicrobial agent resistance phenotype
2016-09-19T16:00:17Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
OMP:0007474
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
dsiegele
gilvusmycin antimicrobial agent resistance phenotype
microbial_phenotype
phenol antimicrobial agent resistance phenotype
phenols antimicrobial agent sensitivity phenotype
triclosan antimicrobial agent resistance phenotype
CHEBI:65964
gilvusmycin antimicrobial agent resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
CHEBI:33853
OMP:DAS
CHEBI:164200
triclosan antimicrobial agent resistance phenotype
CHEBI:33853
phenols antimicrobial agent sensitivity phenotype
CHEBI:15882
phenol antimicrobial agent resistance phenotype
resistant to phenols
2016-09-19T16:49:20Z
A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols.
OMP:0007475
dsiegele
microbial_phenotype
A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols.
OMP:JG
not resistant to phenols
2016-09-19T16:49:20Z
A phenols resistance phenotype where an organism or cell is sensitive to phenols.
OMP:0007476
dsiegele
microbial_phenotype
A phenols resistance phenotype where an organism or cell is sensitive to phenols.
OMP:JG
altered resistance to phenols
2016-09-19T16:49:20Z
A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control.
OMP:0007477
dsiegele
microbial_phenotype
A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control.
OMP:JG
increased resistance to phenols
2016-09-19T16:49:20Z
An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control.
OMP:0007478
dsiegele
microbial_phenotype
An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control.
OMP:JG
decreased resistance to phenols
2016-09-19T16:49:20Z
An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control.
OMP:0007479
dsiegele
microbial_phenotype
An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control.
OMP:JG
abolished resistance to phenols
2016-09-19T16:49:20Z
A decreased resistance to phenols phenotype where resistance to phenols is abolished.
OMP:0007480
dsiegele
microbial_phenotype
A decreased resistance to phenols phenotype where resistance to phenols is abolished.
OMP:JG
quaternary ammonium salts antimicrobial agent resistance phenotype
2016-09-19T17:10:16Z
An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups.
OMP:0007481
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
benzalkonium chloride resistance phenotype
dsiegele
methyl green resistance phenotype
microbial_phenotype
quaternium-15 resistance phenotype
An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups.
CHEBI:35273
OMP:DAS
CHEBI:CHEBI:87649
methyl green resistance phenotype
CHEBI:3020
benzalkonium chloride resistance phenotype
CHEBI:59607
quaternium-15 resistance phenotype
resistant to quaternary ammonium salt antimicrobial agent
2016-09-19T17:10:16Z
A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts.
OMP:0007482
dsiegele
microbial_phenotype
A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts.
OMP:JG
not resistant to quaternary ammonium salt antimicrobial agent
2016-09-19T17:10:16Z
A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts.
OMP:0007483
dsiegele
microbial_phenotype
A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts.
OMP:JG
altered resistance to quaternary ammonium salt antimicrobial agent
2016-09-19T17:10:16Z
A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control.
OMP:0007484
dsiegele
microbial_phenotype
A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control.
OMP:JG
increased resistance to quaternary ammonium salt antimicrobial agent
2016-09-19T17:10:16Z
An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control.
OMP:0007485
dsiegele
microbial_phenotype
An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control.
OMP:JG
decreased resistance to quaternary ammonium salt antimicrobial agent
2016-09-19T17:10:16Z
An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control.
OMP:0007486
dsiegele
microbial_phenotype
An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control.
OMP:JG
abolished resistance to quaternary ammonium salt antimicrobial agent
2016-09-19T17:10:16Z
A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished.
OMP:0007487
dsiegele
microbial_phenotype
A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished.
OMP:JG
absence of motility by gliding
2016-09-24T23:00:10Z
An absence of motility phenotype where a microbe is not capable of gliding motility.
OMP:0007488
microbial_phenotype
siegele
An absence of motility phenotype where a microbe is not capable of gliding motility.
OMP:DAS
absence of motility by swarming
2016-09-24T23:00:10Z
An absence of motility phenotype where a microbe is not capable of swarming motility.
OMP:0007489
microbial_phenotype
siegele
An absence of motility phenotype where a microbe is not capable of swarming motility.
OMP:DAS
absence of motility by swimming
2016-09-24T23:00:10Z
An absence of motility phenotype where a microbe is not capable of swimming motility.
OMP:0007490
microbial_phenotype
siegele
An absence of motility phenotype where a microbe is not capable of swimming motility.
OMP:DAS
absence of motility by twitching
2016-09-24T23:00:10Z
An absence of motility phenotype where a microbe is not capable of twitching motility.
OMP:0007491
microbial_phenotype
siegele
An absence of motility phenotype where a microbe is not capable of twitching motility.
OMP:DAS
altered motility by gliding
2016-09-24T23:01:37Z
A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control.
OMP:0007492
microbial_phenotype
siegele
A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control.
OMP:DAS
altered cell motility by twitching
2016-09-24T23:01:37Z
A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control.
OMP:0007493
microbial_phenotype
siegele
A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control.
OMP:DAS
abolished motility by twitching
2016-09-24T23:04:50Z
A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished.
OMP:0007494
microbial_phenotype
siegele
A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished.
OMP:DAS
epoxide resistance phenotype
2016-09-25T12:02:01Z
An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring.
OMP:0007495
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
cerulenin resistance phenotype
microbial_phenotype
siegele
CHEBI:171741
cerulenin resistance phenotype
An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring.
CHEBI:32955
OMP:DAS
resistant to an epoxide
2016-09-25T12:11:27Z
An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide.
OMP:0007496
microbial_phenotype
siegele
An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide.
OMP:JG
not resistant to an epoxide
2016-09-25T12:11:27Z
An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide.
OMP:0007497
microbial_phenotype
siegele
An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide.
OMP:JG
altered epoxide resistance
2016-09-25T12:11:27Z
An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control.
OMP:0007498
microbial_phenotype
siegele
An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control.
OMP:JG
increased resistance to an epoxide
2016-09-25T12:12:32Z
An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control.
OMP:0007499
microbial_phenotype
siegele
An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control.
OMP:JG
decreased resistance to an epoxide
2016-09-25T12:12:32Z
An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control.
OMP:0007500
microbial_phenotype
siegele
An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control.
OMP:JG
abolished resistance to an epoxide
2016-09-25T12:12:32Z
A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished.
OMP:0007501
microbial_phenotype
siegele
A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished.
OMP:JG
altered capsule morphology
2016-09-25T13:45:05Z
A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control.
OMP:0007502
microbial_phenotype
siegele
A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control.
OMP:DAS
altered capsule size
2016-09-25T13:47:16Z
An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control.
OMP:0007503
microbial_phenotype
siegele
An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control.
OMP:DAS
Increased capsule size
2016-09-25T13:49:19Z
An altered capsule size phenotype where the size of the capsule is increased relative to a designated control.
OMP:0007504
microbial_phenotype
siegele
An altered capsule size phenotype where the size of the capsule is increased relative to a designated control.
OMP:DAS
decreased capsule size
2016-09-25T13:49:19Z
An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control.
OMP:0007505
microbial_phenotype
siegele
An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control.
OMP:DAS
titan cell morphology phenotype
2016-09-25T22:33:27Z
A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
FAO:0000063
OMP:0007506
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
titan cell
FAO:0000063
A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
FAO:0000063
OMP:DAS
PMID:21821718
presence of titan cells
2016-09-25T23:28:19Z
A titan cell phenotype where a microbe is able to form titan cells.
OMP:0007507
microbial_phenotype
siegele
A titan cell phenotype where a microbe is able to form titan cells.
OMP:DAS
absence of titan cells
2016-09-25T23:28:19Z
A titan cell phenotype where a microbe cannot form titan cells.
OMP:0007508
microbial_phenotype
siegele
A titan cell phenotype where a microbe cannot form titan cells.
OMP:DAS
altered titan cell morphology
2016-09-25T23:28:19Z
A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control.
OMP:0007509
microbial_phenotype
siegele
A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control.
OMP:DAS
altered titan cell formation
2016-09-25T23:32:51Z
A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control.
OMP:0007510
microbial_phenotype
siegele
A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control.
OMP:DAS
ascospore morphology phenotype
2016-12-19T14:07:15Z
A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete.
OMP:0007511
microbial_phenotype
siegele
A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete.
CL:0000607
FAO:0000020
OMP:DAS
altered ascospore morphology
2016-12-19T14:12:30Z
An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control.
OMP:0007512
microbial_phenotype
siegele
An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control.
OMP:DAS
altered endospore morphology
2016-12-19T14:16:33Z
An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control.
OMP:0007513
microbial_phenotype
siegele
An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control.
OMP:DAS
decreased negative osmotaxis
2017-02-20T15:38:16Z
A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control.
OMP:0007514
dsiegele
microbial_phenotype
A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control.
OMP:DAS
decreased positive osmotaxis
2017-02-20T15:38:16Z
A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control.
OMP:0007515
dsiegele
microbial_phenotype
A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control.
OMP:DAS
population growth in high osmolarity phenotype
2017-02-20T15:58:54Z
A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both.
OMP:0007516
dsiegele
microbial_phenotype
A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both.
OMP:DAS
presence of population growth in high osmolarity
2017-02-20T15:59:09Z
A population growth phenotype where a microbial population can grow in conditions of high osmolarity.
OMP:0007517
dsiegele
microbial_phenotype
normal growth during cellular response to high osmolarity
FYPO:0001022
normal growth during cellular response to high osmolarity
A population growth phenotype where a microbial population can grow in conditions of high osmolarity.
OMP:DAS
absence of population growth in high osmolarity
2017-02-20T15:59:09Z
A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity.
OMP:0007518
dsiegele
microbial_phenotype
A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity.
OMP:DAS
altered population growth in high osmolarity
2017-02-20T15:59:09Z
A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control.
OMP:0007519
dsiegele
microbial_phenotype
A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control.
OMP:DAS
increased population growth in high osmolarity
2017-02-20T16:03:09Z
An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both.
OMP:0007520
dsiegele
microbial_phenotype
An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both.
OMP:DAS
decreased population growth in high osmolarity
2017-02-20T16:03:09Z
An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both.
OMP:0007521
dsiegele
microbial_phenotype
An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both.
OMP:DAS
abolished population growth in high osmolarity
2017-02-20T16:03:16Z
A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity.
OMP:0007522
dsiegele
microbial_phenotype
A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity.
OMP:DAS
altered population growth range
2017-02-20T16:06:25Z
A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control.
OMP:0007523
dsiegele
microbial_phenotype
A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control.
OMP:DAS
presence of lethality in an invertebrate host
2017-02-20T16:43:30Z
A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host.
OMP:0007524
dsiegele
microbial_phenotype
A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host.
OMP:DAS
absence of lethality in an invertebrate host
2017-02-20T16:46:31Z
An absence of lethality phenotype where the infected host is an invertebrate.
OMP:0007525
dsiegele
microbial_phenotype
An absence of lethality phenotype where the infected host is an invertebrate.
OMP:DAS
altered lethality in an invertebrate host
2017-02-20T16:48:08Z
An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control.
OMP:0007526
dsiegele
microbial_phenotype
An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control.
OMP:DAS
altered lethality in an amoeba host
2017-02-20T16:49:04Z
An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control.
OMP:0007527
dsiegele
microbial_phenotype
An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control.
OMP:DAS
presence of lethality in an amoeba host
2017-02-20T16:54:13Z
A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host.
OMP:0007528
dsiegele
microbial_phenotype
A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host.
OMP:DAS
absence of lethality in an amoeba host
2017-02-20T16:55:05Z
An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host.
OMP:0007529
dsiegele
microbial_phenotype
An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host.
OMP:DAS
decreased lethality in an amoeba host
2017-02-20T16:57:15Z
An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control.
OMP:0007530
dsiegele
microbial_phenotype
An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control.
OMP:DAS
increased lethality in an amoeba host
2017-02-20T16:57:15Z
An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control.
OMP:0007531
dsiegele
microbial_phenotype
An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control.
OMP:DAS
abolished lethality in an amoeba host
2017-02-20T16:59:35Z
A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished.
OMP:0007532
dsiegele
microbial_phenotype
A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished.
OMP:DAS
urea derivative resistance phenotype
2017-02-24T13:14:38Z
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea.
OMP:0007195
OMP:0007533
The original term and its children were deemed to be too granular and were replaced with OMP:0007195 ! chemical resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
OMP:0007247 resistant to a chemical
OMP:0007246 not resistant to a chemical
OMP:0007248 altered chemical resistance
OMP:0007249 decreased resistance to a chemical
OMP:0007883 abolished chemical resistance
OMP:0007250 increased resistance to a chemical
microbial_phenotype
siegele
true
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea.
CHEBI:47857
OMP:DAS
resistant to a urea derivative
2017-02-24T13:18:35Z
A ureas resistance phenotype where a microbe is resistant to a derivative of urea.
OMP:0007247
OMP:0007534
microbial_phenotype
siegele
true
A ureas resistance phenotype where a microbe is resistant to a derivative of urea.
CHEBI:47857
OMP:DAS
not resistant to a urea derivative
2017-02-24T13:18:35Z
A ureas resistance phenotype where a microbe is not resistant to a derivative of urea.
OMP:0007246
OMP:0007535
The original term was deemed to be too granular.
microbial_phenotype
siegele
true
A ureas resistance phenotype where a microbe is not resistant to a derivative of urea.
CHEBI:47857
OMP:DAS
altered resistance to a urea derivative
2017-02-24T13:18:35Z
A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control.
OMP:0007248
OMP:0007536
The original term was deemed to be too granular and was replaced with OMP:0007248 ! altered resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
microbial_phenotype
siegele
true
A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control.
CHEBI:47857
OMP:DAS
increased resistance to a urea derivative
2017-02-24T13:19:13Z
An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control.
OMP:0007250
OMP:0007537
The original term was deemed to be too granular and were replaced with OMP:0007250 ! increased resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
decreased sensitivity to a urea derivative
decreased sensitivity to hydroxyurea
microbial_phenotype
siegele
true
CHEBI:44423
decreased sensitivity to hydroxyurea
An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control.
OMP:DAS
decreased resistance to a urea derivative
2017-02-24T13:19:13Z
An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control.
OMP:0007249
OMP:0007538
The original term was deemed to be too granular and were replaced with OMP:0007249 decreased resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
increased sensitivity to a urea derivative
increased sensitivity to hydroxyurea
microbial_phenotype
siegele
true
An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control.
OMP:DAS
CHEBI:44423
increased sensitivity to hydroxyurea
abolished resistance to a urea derivative
2017-02-24T13:19:20Z
A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished.
OMP:0007539
OMP:0007883
The original term was deemed to be too granular and were replaced with OMP:0007883 ! abolished resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
microbial_phenotype
siegele
true
A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished.
OMP:DAS
virus phenotype
2017-04-19T13:39:46Z
A microbial phenotype related to the form and structure of a virus.
OMP:0007540
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype related to the form and structure of a virus.
OMP:DR
virion morphology phenotype
2017-04-19T13:42:41Z
A virus phenotype related to the form and structure of a virion.
OMP:0007541
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A virus phenotype related to the form and structure of a virion.
OMP:DR
haploid fruiting phenotype
2017-05-29T16:17:29Z
An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating.
GO:0000905
OMP:0007542
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
homokaryotic fruiting phenotype
microbial_phenotype
monokaryotic fruiting phenotype
siegele
An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating.
OMP:DAS
sporocarp development involved in asexual reproduction
GO:0000905
presence of haploid fruiting
2017-05-29T16:19:54Z
A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting.
OMP:0007543
microbial_phenotype
presence of monokaryotic fruiting
siegele
A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting.
OMP:DAS
absence of haploid fruiting
2017-05-29T16:21:37Z
A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting.
OMP:0007544
absence of monokaryotic fruiting
microbial_phenotype
siegele
A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting.
OMP:DAS
altered haploid fruiting
2017-05-29T16:24:41Z
A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control.
OMP:0007545
altered monokaryotic fruiting
microbial_phenotype
siegele
A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control.
OMP:DAS
increased haploid fruiting
2017-05-29T16:27:37Z
An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control.
OMP:0007546
increased monokaryotic fruiting
microbial_phenotype
siegele
An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control.
OMP:DAS
decreased haploid fruiting
2017-05-29T16:27:37Z
An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control.
OMP:0007547
decreased monokaryotic fruiting
microbial_phenotype
siegele
An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control.
OMP:DAS
abolished haploid fruiting
2017-05-29T16:27:37Z
A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished.
OMP:0007548
abolished monokaryotic fruiting
microbial_phenotype
siegele
A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished.
OMP:DAS
altered biological process phenotype
2017-05-29T16:35:44Z
OMP:0007351
OMP:0007549
This term was made obsolete because it is a duplicate of OMP:0007351.
microbial_phenotype
siegele
true
OMP:DAS
This term was made obsolete because it is a duplicate of OMP:0007351.
altered population growth - duplicate term
2017-05-29T16:37:18Z
DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations.
OMP:0007157
OMP:0007550
microbial_phenotype
siegele
true
DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations.
OMP:DAS
increased rate of haploid fruiting
2017-05-29T17:45:32Z
An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
OMP:0007551
increased rate of monokaryotic fruiting
microbial_phenotype
siegele
An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
OMP:DAS
decreased rate of haploid fruiting
2017-05-29T17:48:15Z
A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
OMP:0007552
decreased rate of monokaryotic fruiting
microbial_phenotype
siegele
A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
OMP:DAS
clamp cell morphology phenotype
2017-05-30T14:37:57Z
A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell.
OMP:0007553
microbial_phenotype
siegele
A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell.
DOI:10.1007/978-3-642-22916-9_10
FAO:0000060
OMP:DAS
titan cell formation phenotype
2017-05-30T15:28:59Z
A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
OMP:0007554
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
FAO:0000063
OMP:DAS
PMID:21821718
multicellular microorganism morphology phenotype
2017-05-30T15:39:20Z
A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism.
OMP:0007555
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism.
OMP:DAS
hyphal morphology phenotype
2017-05-30T16:03:57Z
A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall.
OMP:0007556
microbial_phenotype
siegele
A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall.
OMP:DAS
filamentous growth of a multicellular organism phenotype
2017-05-30T16:34:41Z
A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape.
OMP:0007557
hyphal growth phenotype
microbial_phenotype
siegele
A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape.
GO:0044181
OMP:DAS
clamp cell formation phenotype
2017-05-30T16:44:54Z
A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae.
OMP:0007558
microbial_phenotype
siegele
A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae.
OMP:DAS
PMID:15162390
clamp connection morphology phenotype
2017-05-30T17:04:06Z
OMP:0007559
microbial_phenotype
siegele
conidiation phenotype
2017-06-19T15:29:04Z
An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores.
OMP:0007560
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores.
FAO:0000024
GO:0048315
OMP:DAS
meiotic nuclear division phenotype
2017-06-20T15:55:03Z
A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle.
OMP:0007561
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
abnormal meiosis
dsiegele
microbial_phenotype
normal meiosis
FYPO:0000051
abnormal meiosis
FYPO:0000478
normal meiosis
A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle.
GO:0140013
OMP:DAS
presence of meiotic nuclear division
2017-06-20T16:09:31Z
A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur.
FYPO:0000478
OMP:0007562
dsiegele
microbial_phenotype
normal meiosis
FYPO:0000478
A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur.
GO:00140013
OMP:DAS
absence of meiotic nuclear division
2017-06-20T16:09:31Z
A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent.
OMP:0007563
dsiegele
microbial_phenotype
A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent.
OMP:DAS
altered meiotic nuclear division
2017-06-20T16:09:31Z
A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control.
OMP:0007564
dsiegele
microbial_phenotype
A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control.
OMP:DAS
abolished meiotic nuclear division
2017-06-20T16:12:11Z
An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished.
FYPO:0000474
OMP:0007565
dsiegele
microbial_phenotype
abolished meiosis
FYPO:0000474
An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished.
FYPO:0000474
OMP:DAS
abolished meiosis I
2017-06-20T16:18:05Z
An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur.
FYPO:0003378
OMP:0007566
dsiegele
microbial_phenotype
An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur.
GO:0007127
OMP:DAS
abolished meiosis I
FYPO:0003378
abolished meiosis II
2017-06-20T16:18:05Z
An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur.
FYPO:0003379
OMP:0007567
dsiegele
microbial_phenotype
abolished meiosis II
FYPO:0003379
An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur.
GO:0007135
OMP:DAS
resistance to stress phenotype
2017-06-21T14:34:05Z
A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress.
OMP:0007568
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
Use a descendant of this term if you have assayed growth of cells exposed to a stress in culture. If you have assayed the response to a stress at the subcellular or molecular level, consider annotating to one of the descendants of 'response to stress phenotype' (OMP:0000173).
dsiegele
microbial_phenotype
resistant to a stress
sensitive to a stress
A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress.
FYPO:0002046
OMP:DAS
resistance to oxidative stress phenotype
2017-06-21T14:51:26Z
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species.
OMP:0007569
dsiegele
microbial_phenotype
resistance to hydrogen peroxide stress
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species.
OMP:DAS
presence of resistance to oxidative stress
2017-06-21T14:58:47Z
A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress.
OMP:0007570
dsiegele
microbial_phenotype
resistant to oxidative stress
A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress.
OMP:DAS
absence of resistance to oxidative stress
2017-06-21T14:59:22Z
A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress.
FYPO:0000726
OMP:0007571
dsiegele
microbial_phenotype
sensitive to oxidative stress
A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress.
OMP:DAS
sensitive to oxidative stress
FYPO:0000726
altered resistance to stress
2017-06-21T15:00:53Z
A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control.
OMP:0007572
dsiegele
microbial_phenotype
A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control.
OMP:DAS
resistance to pH shock phenotype
2017-06-21T16:00:11Z
A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5.
OMP:0007573
dsiegele
microbial_phenotype
A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5.
OMP:DAS
resistance to alkaline pH stress phenotype
2017-06-21T16:01:32Z
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5).
OMP:0007574
dsiegele
microbial_phenotype
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5).
OMP:DAS
resistance to dessication stress phenotype
2017-06-21T16:05:55Z
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress.
OMP:0007575
dsiegele
microbial_phenotype
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress.
OMP:DAS
resistance to radiation stress phenotype
2017-06-21T16:08:28Z
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation.
OMP:0007576
dsiegele
microbial_phenotype
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation.
OMP:DAS
resistance to chemical stress phenotype
2017-06-21T16:14:11Z
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical.
OMP:0007577
dsiegele
microbial_phenotype
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical.
OMP:DAS
resistance to cold shock phenotype
2017-06-25T18:41:35Z
A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe.
OMP:0007578
microbial_phenotype
siegele
A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe.
FYPO:0006084
OMP:DAS
resistance to heat shock phenotype
2017-06-25T18:42:01Z
A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe.
OMP:0007579
microbial_phenotype
siegele
A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe.
FYPO:0002045
OMP:DAS
presence of resistance to cold shock
2017-06-25T18:48:47Z
A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe.
OMP:0007580
cold resistant
microbial_phenotype
resistant to low temperature
siegele
A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe.
OMP:DAS
absence of resistance to cold shock
2017-06-25T18:48:47Z
A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe.
OMP:0007581
cold sensitive
cold sensitivity
microbial_phenotype
siegele
A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe.
OMP:DAS
YPO:0000148
cold sensitive
APO:0000148
cold sensitivity
altered resistance to cold shock
2017-06-25T18:48:47Z
A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control.
OMP:0007582
microbial_phenotype
siegele
A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control.
OMP:DAS
presence of resistance to heat shock
2017-06-25T18:54:38Z
A resistance to heat shock phenotype where a microbial population is resistant to heat shock.
OMP:0007583
microbial_phenotype
resistance to heat shock
resistant to heat shock
siegele
FYPO:0002045
resistance to heat shock
A resistance to heat shock phenotype where a microbial population is resistant to heat shock.
OMP:DAS
absence of resistance to heat shock
2017-06-25T18:54:39Z
A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock.
OMP:0007584
microbial_phenotype
sensitive to heat shock
siegele
A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock.
OMP:DAS
altered resistance to heat
2017-06-25T18:54:39Z
A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control.
OMP:0007585
microbial_phenotype
siegele
A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control.
OMP:DAS
altered resistance to chemical stress
2017-06-25T19:35:57Z
A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control.
OMP:0007586
microbial_phenotype
siegele
A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control.
OMP:DAS
increased resistance to cold shock
2017-06-25T22:21:53Z
An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control.
OMP:0007587
microbial_phenotype
siegele
An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control.
OMP:DAS
decreased resistance to cold shock
2017-06-25T22:21:53Z
An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control.
OMP:0007588
microbial_phenotype
siegele
An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control.
OMP:DAS
abolished resistance to cold shock
2017-06-25T22:21:53Z
A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished.
OMP:0007589
microbial_phenotype
siegele
A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished.
OMP:DAS
increased resistance to heat
2017-06-25T22:26:03Z
An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control.
FYPO:0002626
OMP:0007590
microbial_phenotype
siegele
resistance to heat
FYPO:0002626
An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control.
OMP:DAS
decreased resistance to heat shock
2017-06-25T22:26:03Z
An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control.
OMP:0007591
microbial_phenotype
siegele
An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control.
OMP:DAS
abolished resistance to heat shock
2017-06-25T22:26:03Z
A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished.
OMP:0007592
microbial_phenotype
siegele
A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished.
OMP:DAS
resistance to freeze-thaw stress phenotype
2017-06-26T17:11:33Z
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing.
OMP:0007593
microbial_phenotype
siegele
A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing.
OMP:DAS
altered resistance to radiation stress
2017-06-26T20:24:54Z
A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control.
OMP:0007594
microbial_phenotype
siegele
A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control.
OMP:DAS
presence of population growth
2017-06-27T12:19:09Z
A population growth phenotype where a microbial population is able to reproduce.
OMP:0007595
microbial_phenotype
siegele
A population growth phenotype where a microbial population is able to reproduce.
OMP:das
absence of population growth
2017-06-27T12:19:09Z
A population growth phenotype where the number of individuals in a microbial population does not increase.
OMP:0007596
microbial_phenotype
siegele
A population growth phenotype where the number of individuals in a microbial population does not increase.
OMP:DAS
increased population growth
2017-06-27T12:40:34Z
An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control.
OMP:0007597
microbial_phenotype
siegele
An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control.
OMP:DAS
decreased population growth
2017-06-27T12:40:34Z
An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control.
OMP:0007598
microbial_phenotype
siegele
An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control.
OMP:DAS
abolished population growth
2017-06-27T12:40:34Z
A decreased population growth phenotype where reproduction of a microbial population is abolished.
OMP:0007599
microbial_phenotype
siegele
A decreased population growth phenotype where reproduction of a microbial population is abolished.
OMP:DAS
presence of chromosome segregation
2017-06-27T17:34:40Z
A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
OMP:0007600
microbial_phenotype
siegele
A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
OMP:DAS
absence of chromosome segregation
2017-06-27T17:34:40Z
A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells.
OMP:0007601
microbial_phenotype
siegele
A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells.
OMP:DAS
DNA break phenotype
2017-06-27T21:46:34Z
A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA.
OMP:0007602
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA.
OMP:DAS
presence of DNA breaks
2017-06-27T21:49:30Z
A DNA break phenotype where breaks in chromosomal DNA occur.
OMP:0007603
microbial_phenotype
siegele
A DNA break phenotype where breaks in chromosomal DNA occur.
OMP:DAS
absence of DNA breaks
2017-06-27T21:49:30Z
A DNA break phenotype where breaks in chromosomal DNA don't occur.
OMP:0007604
microbial_phenotype
siegele
A DNA break phenotype where breaks in chromosomal DNA don't occur.
OMP:DAS
altered frequency of DNA breaks
2017-06-27T21:49:30Z
A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control.
OMP:0007605
microbial_phenotype
siegele
A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control.
OMP:DAS
increased frequency of DNA breaks
2017-06-27T21:52:51Z
An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control.
OMP:0007606
microbial_phenotype
siegele
An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control.
OMP:DAS
decreased frequency of DNA breaks
2017-06-27T21:52:51Z
An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control.
OMP:0007607
microbial_phenotype
siegele
An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control.
OMP:DAS
abolished DNA breaks
2017-06-27T21:52:51Z
A decreased frequency of DNA breaks phenotype where DNA breaks are abolished.
OMP:0007608
microbial_phenotype
siegele
A decreased frequency of DNA breaks phenotype where DNA breaks are abolished.
OMP:DAS
presence of single-strand DNA breaks
2017-06-27T21:53:37Z
A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur.
OMP:0007609
microbial_phenotype
siegele
A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur.
OMP:DAS
presence of double-strand DNA breaks
2017-06-27T21:53:37Z
A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur.
OMP:0007610
microbial_phenotype
siegele
A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur.
OMP:DAS
absence of single-strand DNA breaks
2017-06-27T21:54:07Z
An absence of DNA breaks phenotype where single-strand DNA breaks don't occur.
OMP:0007611
microbial_phenotype
siegele
An absence of DNA breaks phenotype where single-strand DNA breaks don't occur.
OMP:DAS
absence of double-strand DNA breaks
2017-06-27T21:54:07Z
An absence of DNA breaks phenotype where double-strand DNA breaks don't occur.
OMP:0007612
microbial_phenotype
siegele
An absence of DNA breaks phenotype where double-strand DNA breaks don't occur.
OMP:DAS
increased frequency of single-strand DNA breaks
2017-06-27T21:54:53Z
An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control.
OMP:0007613
microbial_phenotype
siegele
An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control.
OMP:DAS
increased frequency of double-strand DNA breaks
2017-06-27T21:54:53Z
An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control.
OMP:0007614
microbial_phenotype
siegele
An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control.
OMP:DAS
decreased frequency of single-strand DNA breaks
2017-06-27T21:55:25Z
A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control.
OMP:0007615
microbial_phenotype
siegele
A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control.
OMP:DAS
decreased frequency of double-strand DNA breaks
2017-06-27T21:55:25Z
A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control.
OMP:0007616
microbial_phenotype
siegele
A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control.
OMP:DAS
Holliday junction structure phenotype
2017-06-28T13:51:06Z
A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA.
OMP:0007617
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA.
OMP:DAS
presence of Holliday junction structures
2017-06-28T13:53:37Z
A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA.
OMP:0007618
microbial_phenotype
siegele
A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA.
OMP:DAS
absence of Holliday junction structures
2017-06-28T13:53:37Z
A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA.
OMP:0007619
microbial_phenotype
siegele
A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA.
OMP:DAS
altered frequency of Holliday junction structures
2017-06-28T13:53:37Z
A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control.
OMP:0007620
microbial_phenotype
siegele
A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control.
OMP:DAS
increased frequency of Holliday junction structures
2017-06-28T13:56:30Z
An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control.
OMP:0007621
microbial_phenotype
siegele
An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control.
OMP:DAS
decreased frequency of Holliday junction structures
2017-06-28T13:56:30Z
An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control.
OMP:0007622
microbial_phenotype
siegele
An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control.
OMP:DAS
abolished Holliday junction structures
2017-06-28T13:56:30Z
A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished.
OMP:0007623
microbial_phenotype
siegele
A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished.
OMP:DAS
presence of chitin in cell wall
2017-07-05T13:24:55Z
A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029).
APO:0000199
OMP:0007624
dsiegele
microbial_phenotype
A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029).
OMP:DAS
chitin deposition
APO:0000199
absence of chitin in cell wall
2017-07-05T13:40:27Z
A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029).
OMP:0007625
dsiegele
microbial_phenotype
A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029).
OMP:DAS
altered cell wall chitin level
2017-07-05T13:42:09Z
An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control.
OMP:0007626
dsiegele
microbial_phenotype
An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control.
OMP:DAS
increased cell wall chitin level
2017-07-05T13:44:03Z
An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control.
OMP:0007627
dsiegele
microbial_phenotype
An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control.
OMP:DAS
decreased cell wall chitin level
2017-07-05T13:44:03Z
An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control.
OMP:0007628
dsiegele
microbial_phenotype
An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control.
OMP:DAS
abolished chitin in cell wall
2017-07-05T13:44:03Z
A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished.
OMP:0007629
dsiegele
microbial_phenotype
A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished.
OMP:DAS
altered cell wall protein level
2017-07-05T14:26:32Z
An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected.
OMP:0007630
dsiegele
microbial_phenotype
An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected.
OMP:DAS
increased cell wall protein level
2017-07-05T16:47:42Z
An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control.
OMP:0007631
dsiegele
microbial_phenotype
An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control.
OMP:DAS
cell phenotype
2017-07-05T16:09:49Z
A microbial phenotype that is observed at the level of an individual cell.
FYPO:0000002
OMP:0007632
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
cell phenotype
FYPO:0000002
A microbial phenotype that is observed at the level of an individual cell.
FYPO:0000002
OMP:DAS
cellular physical quality phenotype
2017-07-05T16:19:07Z
A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component.
FYPO:0000136
OMP:0007633
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
cellular physical quality phenotype
FYPO:0000136
A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component.
FYPO:0000136
OMP:DAS
altered level of substance in cell
2017-07-05T16:20:55Z
A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control.
OMP:0007634
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control.
FYPO:0000989
OMP:DAS
altered protein level
2017-07-05T16:24:26Z
An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected.
OMP:0007635
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected.
FYPO:0000834
OMP:DAS
altered polysaccharide level
2017-07-05T16:28:00Z
An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control.
OMP:0007636
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control.
FYPO:0001085
OMP:DAS
altered cellular physical quality phenotype
2017-07-05T16:31:01Z
A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control.
OMP:0007637
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
abnormal cellular physical quality phenotype
dsiegele
microbial_phenotype
FYPO:0004638
abnormal cellular physical quality phenotype
A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control.
OMP:DAS
altered cell phenotype
2017-07-05T16:32:45Z
A phenotype observed at the level of an individual cell that is altered relative to a designated control.
OMP:0007638
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
A phenotype observed at the level of an individual cell that is altered relative to a designated control.
OMP:DAS
decreased cell wall protein level
2017-07-05T16:47:42Z
An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control.
OMP:0007639
dsiegele
microbial_phenotype
An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control.
OMP:DAS
abolished cell wall protein level
2017-07-05T16:47:42Z
A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished.
OMP:0007640
dsiegele
microbial_phenotype
A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished.
OMP:DAS
population growth yield phenotype
2017-07-11T02:11:36Z
A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed.
OMP:0007641
microbial_phenotype
siegele
A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed.
OMP:DAS
altered population growth yield
2017-07-11T02:22:26Z
A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control.
OMP:0007642
altered population density at growth saturation
microbial_phenotype
siegele
A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control.
OMP:DAS
increased population growth yield
2017-07-11T02:24:32Z
An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control.
OMP:0007643
increased population density at growth saturation
microbial_phenotype
siegele
An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control.
OMP:DAS
decreased population growth yield
2017-07-11T02:24:32Z
An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control.
OMP:0007644
decreased population density at growth saturation
microbial_phenotype
siegele
An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control.
OMP:DAS
microbial lifestyle phenotype
2017-07-24T14:41:58Z
A microbial phenotype related to the typical way of life of a microbe.
OMP:0007645
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype related to the typical way of life of a microbe.
OMP:DAS
free-living lifestyle phenotype
2017-07-24T14:45:18Z
A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities.
Free-living lifestyle phenotypes may include the expression of flagella, sensing apparati used for
photo- and chemotactic behaviour, and quorum sensing pathways. Please request more specific child terms, as needed.
OMP:0007646
microbial_phenotype
siegele
A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities.
OMP:DAS
attached lifestyle phenotype
2017-07-24T14:59:31Z
A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface.
OMP:0007647
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like.
anchored lifestyle phenotype
microbial_phenotype
sessile lifestyle phenotype
siegele
A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface.
OMP:DAS
presence of an attached lifestyle
2017-07-26T17:24:06Z
An attached lifestyle phenotype where a microbe typically grows and reproduces while physically attached to a
is the summative outcome of multiple phenotypes that, acting together, typically provide a microbe some advantage while competing for niche space while it is physically anchored to some portion of solid material.
May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like.
OMP:0007648
microbial_phenotype
siegele
mitomycin resistance phenotype
2017-08-01T19:36:13Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces.
OMP:0007649
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
mitomycin C resistance phenotype
siegele
CHEBI:27504
mitomycin C resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces.
CHEBI:25357
OMP:DAS
resistant to mitomycin
2017-08-01T19:40:50Z
OMP:0007650
microbial_phenotype
siegele
not resistant to mitomycin
2017-08-01T19:40:50Z
OMP:0007651
microbial_phenotype
siegele
altered mitomycin resistance
2017-08-01T19:40:50Z
A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control.
OMP:0007652
microbial_phenotype
siegele
A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control.
OMP:DAS
increased resistance to mitomycin
2017-08-01T19:42:07Z
An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control.
OMP:0007653
decreased sensitivity to mitomycin
increased resistance to mitomycin C
microbial_phenotype
siegele
CHEBI:25357
decreased sensitivity to mitomycin
CHEBI:27504
increased resistance to mitomycin C
An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control.
OMP:DAS
decreased resistance to mitomycin
2017-08-01T19:42:07Z
An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control.
OMP:0007654
decreased resistance to mitomycin C
increased sensitivity to mitomycin
increased sensitivity to mitomycin C
microbial_phenotype
siegele
CHEBI:27504
decreased resistance to mitomycin C
CHEBI:27504
increased sensitivity to mitomycin C
CHEBI:25357
increased sensitivity to mitomycin
An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control.
OMP:DAS
abolished resistance to mitomycin
2017-08-01T19:42:07Z
A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished.
OMP:0007655
microbial_phenotype
siegele
A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished.
OMP:DAS
level of substance in cell phenotype
2017-08-02T00:45:28Z
OMP:0007656
microbial_phenotype
siegele
level of cellular reactive oxygen species phenotype
2017-08-02T00:47:58Z
A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell.
OMP:0007657
microbial_phenotype
siegele
A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell.
FYPO:0003004
OMP:DAS
presence of cellular reactive oxygen species
2017-08-02T00:49:40Z
OMP:0007658
microbial_phenotype
siegele
absence of cellular reactive oxygen species
2017-08-02T00:49:40Z
OMP:0007659
microbial_phenotype
siegele
altered level of cellular reactive oxygen species
2017-08-02T00:49:40Z
A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control.
OMP:0007660
microbial_phenotype
siegele
A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control.
OMP:DAS
increased level of cellular reactive oxygen species
2017-08-02T00:49:40Z
An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control.
OMP:0007661
microbial_phenotype
siegele
An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control.
OMP:DAS
decreased level of cellular reactive oxygen species
2017-08-02T00:49:40Z
OMP:0007662
microbial_phenotype
siegele
abolished cellular reactive oxygen species
2017-08-02T00:49:40Z
OMP:0007663
microbial_phenotype
siegele
bulging cell morphology
2017-09-28T10:15:36Z
An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control.
OMP:0007666
dsiegele
microbial_phenotype
An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control.
OMP:DAS
PMID:27238023
filamenting cell morphology
2017-09-28T10:36:55Z
An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide.
OMP:0007667
dsiegele
microbial_phenotype
An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide.
OMP:DAS
presence of transport
2017-10-02T15:29:18Z
A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells.
OMP:0007668
microbial_phenotype
siegele
A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells.
OMP:DAS
absence of transport
2017-10-02T15:29:18Z
A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells.
OMP:0007669
microbial_phenotype
siegele
A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells.
OMP:DAS
altered transport
2017-10-02T15:29:18Z
A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control.
OMP:0007670
microbial_phenotype
siegele
A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control.
OMP:DAS
increased transport
2017-10-02T15:29:18Z
An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control.
OMP:0007671
microbial_phenotype
siegele
An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control.
OMP:DAS
decreased transport
2017-10-02T15:29:18Z
An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control.
OMP:0007672
microbial_phenotype
siegele
An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control.
OMP:DAS
abolished transport
2017-10-02T15:29:18Z
A decreased transport phenotype where transport of a substrate(s) is abolished.
OMP:0007673
microbial_phenotype
siegele
A decreased transport phenotype where transport of a substrate(s) is abolished.
OMP:DAS
molecular function phenotype
2017-10-02T15:42:03Z
A microbial phenotype that affects a specific molecular function.
OMP:0007674
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A microbial phenotype that affects a specific molecular function.
FYPO:0000652
OMP:DAS
transporter activity phenotype
2017-10-02T15:43:05Z
A molecular function phenotype that affects a transporter activity in a microbe.
OMP:0007675
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A molecular function phenotype that affects a transporter activity in a microbe.
OMP:DAS
presence of transporter activity
2017-10-02T15:43:54Z
A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate.
OMP:0007676
microbial_phenotype
siegele
A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate.
OMP:DAS
absence of transporter activity
2017-10-02T15:43:54Z
A transporter activity phenotype where a microbe lacks a specific transporter activity.
OMP:0007677
microbial_phenotype
siegele
A transporter activity phenotype where a microbe lacks a specific transporter activity.
OMP:DAS
altered transporter activity
2017-10-02T15:43:54Z
An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control.
OMP:0007678
microbial_phenotype
siegele
An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control.
OMP:DAS
decreased transporter activity
2017-10-02T15:44:25Z
An altered transporter activity phenotype where the observed rate of a specified transporter activity is decreased relative to a designated control.
OMP:0007679
microbial_phenotype
siegele
increased transporter activity
2017-10-02T15:44:25Z
An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control.
OMP:0007680
microbial_phenotype
siegele
An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control.
OMP:DAS
abolished transporter activity
2017-10-02T15:44:25Z
A decreased transporter activity phenotype where a specified transporter activity is abolished.
OMP:0007681
microbial_phenotype
siegele
A decreased transporter activity phenotype where a specified transporter activity is abolished.
OMP:DAS
terminal phenotype
2017-10-10T10:22:47Z
A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable.
OMP:0007682
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
dsiegele
microbial_phenotype
A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable.
OMP:DAS
bending cell morphology
2017-11-14T10:52:24Z
OMP:0007683
dsiegele
microbial_phenotype
cell growth phenotype
2017-11-30T10:36:59Z
A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
OMP:0007684
dsiegele
microbial_phenotype
normal cell growth
A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0016049
OMP:das
FYPO:0002062
normal cell growth
presence of cell growth
2017-11-30T10:42:26Z
A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007685
dsiegele
microbial_phenotype
A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
OMP:das
absence of cell growth
2017-11-30T10:42:26Z
A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007686
dsiegele
microbial_phenotype
A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present.
OMP:das
altered cell growth
2017-11-30T10:42:26Z
A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007687
dsiegele
microbial_phenotype
A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control.
OMP:das
decreased cell growth
2017-11-30T10:56:24Z
An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007688
dsiegele
microbial_phenotype
An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control.
OMP:das
increased cell growth
2017-11-30T10:56:24Z
An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007689
dsiegele
microbial_phenotype
An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control.
OMP:das
abolished cell growth
2017-11-30T10:56:24Z
A decreased cell growth phenotype where cell growth is abolished.
OMP:0007690
dsiegele
microbial_phenotype
A decreased cell growth phenotype where cell growth is abolished.
OMP:das
vegetative cell growth phenotype
2017-12-01T15:44:00Z
A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
OMP:0007691
microbial_phenotype
siegele
A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
OMP:das
presence of vegetative cell growth
2017-12-01T15:47:36Z
A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007692
microbial_phenotype
siegele
A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle.
FYPO:0002085
OMP:das
absence of vegetative cell growth
2017-12-01T15:47:36Z
A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007693
microbial_phenotype
siegele
A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle.
OMP:das
altered vegetative cell growth
2017-12-01T15:47:36Z
A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
FYPO:0003154
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007694
microbial_phenotype
siegele
abnormal vegetative cell growth
FYPO:0003154
A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
FYPO:0003154
OMP:das
increased vegetative cell growth
2017-12-01T15:47:36Z
An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007695
microbial_phenotype
siegele
An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control.
OMP:das
decreased vegetative cell growth
2017-12-01T15:47:37Z
An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007696
microbial_phenotype
siegele
An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
OMP:das
abolished vegetative cell growth
2017-12-01T15:47:37Z
A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished.
Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
OMP:0007697
microbial_phenotype
siegele
A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished.
OMP:das
cell population phenotype
2017-12-04T20:08:24Z
A population phenotype that is observed at the level of a population of microbial cells.
OMP:0007698
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
cell population phenotype
microbial_phenotype
siegele
A population phenotype that is observed at the level of a population of microbial cells.
FYPO:0002057
OMP:das
FYPO:0002057
cell population phenotype
nonviable cell population
2017-12-04T20:14:07Z
A cell population phenotype in which none of the cells in the population are viable.
FYPO:0002059
OMP:0007699
microbial_phenotype
siegele
A cell population phenotype in which none of the cells in the population are viable.
FYPO:0002059
OMP:das
nonviable vegetative cell population
2017-12-04T20:15:43Z
A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle.
OMP:0007700
inviable vegetative cell population
microbial_phenotype
siegele
A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle.
FYPO:0002061
OMP:das
FYPO:0002061
inviable vegetative cell population
nonviable spore population
2017-12-04T20:19:36Z
A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate.
FYPO:000064
OMP:0007701
microbial_phenotype
siegele
inviable spore population
FYPO:000064
A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate.
FYPO:0000647
OMP:das
decreased cell population viability
2017-12-04T20:23:38Z
An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control.
OMP:0007702
microbial_phenotype
siegele
An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control.
OMP:das
increased cell population viability
2017-12-04T20:23:38Z
An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control.
OMP:0007703
microbial_phenotype
siegele
An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control.
OMP:das
abolished cell population viability
2017-12-04T20:23:38Z
OMP:0007704
microbial_phenotype
siegele
cell population viability phenotype
2017-12-04T20:26:35Z
A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment.
OMP:0007705
cell population viability
microbial_phenotype
siegele
A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment.
OMP:das
FYPO:0002057
cell population viability
viable spore population
2017-12-05T00:44:44Z
A cell population phenotype in which cells in a population of spores are viable.
FYPO:0003612
OMP:0007706
microbial_phenotype
siegele
viable spore population
FYPO:0003612
A cell population phenotype in which cells in a population of spores are viable.
FYPO:0003612
OMP:das
increased vegetative cell length
2017-12-19T16:16:41Z
An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control.
FYPO:0001122
OMP:0007707
microbial_phenotype
siegele
An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control.
OMP:das
elongated vegetative cell
FYPO:0001122
altered vegetative cell shape
2017-12-19T16:26:51Z
An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
OMP:0007708
abnormal vegetative cell shape
microbial_phenotype
siegele
FYPO:0002196
abnormal vegetative cell shape
An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
OMP:das
more convex colony
2017-12-19T16:38:38Z
An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony.
OMP:0007709
cone-shaped n
microbial_phenotype
siegele
An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony.
OMP:das
conjugation without glucose starvation
2017-12-19T16:56:43Z
An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation.
OMP:0007710
microbial_phenotype
siegele
An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation.
FYPO:0001864
OMP:das
conjugation without nitrogen starvation
2017-12-19T16:59:49Z
An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation.
OMP:0007711
microbial_phenotype
siegele
An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation.
FYPO:0003031
OMP:das
branching of vegetative cell
2017-12-19T17:04:41Z
An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control.
OMP:0007712
microbial_phenotype
siegele
An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control.
FYPO:0000015
OMP:das
altered vegetative cell size
2017-12-19T17:36:21Z
An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control.
OMP:0007713
microbial_phenotype
siegele
An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control.
OMP:das
curving vegetative cell
2017-12-19T17:39:34Z
An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line.
OMP:0007714
microbial_phenotype
siegele
An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line.
FYPO:0000016
OMP:das
altered vegetative cell morphology
2017-12-19T17:49:16Z
An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
OMP:0007715
abnormal vegetative cell morphology
microbial_phenotype
siegele
FYPO:0001118
abnormal vegetative cell morphology
An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
FYPO:0001315
OMP:das
viable vegetative cell
2017-12-19T17:54:52Z
A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions.
OMP:0007716
microbial_phenotype
siegele
viable vegetative cell
A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions.
FYPO:0001491
OMP:das
FYPO:0001491
viable vegetative cell
decreased viability of vegetative microbial cell
2017-12-19T17:56:29Z
An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control.
Note that if you have done an experiment that assays the viability of a population of microbial cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (OMP:xx) or one of its descendants.
OMP:0007717
microbial_phenotype
siegele
An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control.
OMP:das
abolished viability of vegetative microbial cell
2017-12-19T17:58:40Z
An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished.
OMP:0007718
microbial_phenotype
siegele
An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished.
OMP:das
decreased cell volume
2017-12-19T18:18:27Z
An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control.
OMP:0007719
microbial_phenotype
siegele
An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control.
OMP:das
decreased vegetative cell volume
2017-12-19T18:19:35Z
An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
OMP:0007720
microbial_phenotype
siegele
small vegetative cell
An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
OMP:das
FYPO:0000645
small vegetative cell
increased cell volume
2017-12-20T16:40:08Z
OMP:0007721
microbial_phenotype
siegele
increased vegetative cell diameter
2017-12-20T16:41:30Z
An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control.
OMP:0007722
microbial_phenotype
siegele
An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control.
OMP:das
decreased vegetative cell length
2017-12-20T16:46:25Z
An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
OMP:0007723
microbial_phenotype
siegele
An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
OMP:das
altered vegetative cell viability
2017-12-20T16:59:28Z
A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control.
OMP:0007724
microbial_phenotype
siegele
A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control.
OMP:das
nonviable after spore germination
2017-12-20T16:59:57Z
A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified.
OMP:0007725
microbial_phenotype
siegele
A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified.
FYPO:0000316
OMP:das
abolished spore viability
2017-12-20T17:07:55Z
An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate.
OMP:0007726
inviable spore
microbial_phenotype
siegele
FYPO:0002151
inviable spore
An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate.
FYPO:0002151
OMP:das
tapering vegetative cell
2017-12-20T17:25:04Z
An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control.
OMP:0007727
microbial_phenotype
siegele
An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control.
OMP:das
altered mitotic cell cycle
2017-12-20T17:40:46Z
A cellular process phenotype in which the rate, frequency, or occurrence of progression of a cell through a mitotic cell cycle is altered relative to a designated control.
OMP:0007728
abnormal mitotic cell cycle
microbial_phenotype
siegele
FYPO:0000059
abnormal mitotic cell cycle
altered vegetative cell population viability
2017-12-20T23:46:00Z
An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
OMP:0007729
microbial_phenotype
siegele
An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
OMP:das
decreased vegetative cell population viability
2017-12-20T23:47:24Z
An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control.
OMP:0007730
microbial_phenotype
siegele
An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control.
OMP:das
abolished vegetative cell population viability
2017-12-20T23:48:30Z
An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished.
OMP:0007731
inviable vegetative cell population
microbial_phenotype
siegele
An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished.
OMP:das
FYPO:0002061
inviable vegetative cell population
septation index phenotype
2017-12-21T00:00:58Z
A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time.
OMP:0007732
microbial_phenotype
siegele
A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time.
FYPO:0001903
OMP:das
presence of a septation index
2017-12-21T00:03:57Z
OMP:0007733
microbial_phenotype
siegele
altered septation index
2017-12-21T00:04:30Z
A septation index phenotype where the septation index is altered relative to a designated control.
OMP:0007734
microbial_phenotype
siegele
A septation index phenotype where the septation index is altered relative to a designated control.
OMP:das
decreased septation index
2017-12-21T00:05:56Z
A septation index of zero indicates cell cycle arrest.
An altered septation index phenotype in which the septation index is lower than a designated control.
OMP:0007735
decreased septation index
microbial_phenotype
reduced septation index
siegele
An altered septation index phenotype in which the septation index is lower than a designated control.
OMP:das
FYPO:0001128
decreased septation index
increased septation index
2017-12-21T00:08:19Z
An altered septation index phenotype where the septation index is increased relative to a designated control.
OMP:0007736
microbial_phenotype
siegele
An altered septation index phenotype where the septation index is increased relative to a designated control.
FYPO:0000650
OMP:das
more irregular colony margin
2017-12-21T13:33:02Z
An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical.
OMP:0007737
irregular colony morphology
microbial_phenotype
siegele
An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical.
FYPO:0001404
OMP:das
FYPO:0001404
irregular colony morphology
germ tube morphology phenotype
2017-12-21T13:50:25Z
A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination.
OMP:0007738
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination.
BTO:0004822
GO::0032179
OMP:das
altered germ tube morphology
2017-12-21T13:52:14Z
A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control.
OMP:0007739
microbial_phenotype
siegele
A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control.
GO:0032179
OMP:das
elongated germ tube morphology
2017-12-21T13:56:59Z
An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control.
OMP:0007740
microbial_phenotype
siegele
An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control.
OMP:das
vegetative cell lysis phenotype
2018-01-01T13:57:14Z
A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost.
OMP:0007741
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost.
FYPO:0000647
OMP:das
presence of vegetative cell lysis
2018-01-01T14:02:32Z
A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs.
OMP:0007742
microbial_phenotype
siegele
A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs.
OMP:das
absence of vegetative cell lysis
2018-01-01T14:02:32Z
A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur.
OMP:0007743
microbial_phenotype
siegele
A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur.
OMP:das
altered vegetative cell lysis
2018-01-01T14:02:32Z
A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
OMP:0007744
microbial_phenotype
siegele
A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
OMP:das
vegetative cell phenotype
2018-01-01T14:15:57Z
A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle.
OMP:0007745
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle.
FYPO:0001320
OMP:das
altered vegetative cell phenotype
2018-01-01T14:16:46Z
A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control.
OMP:0007746
abnormal vegetative cell phenotype
microbial_phenotype
siegele
FYPO:FYPO:0003755
abnormal vegetative cell phenotype
A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control.
OMP:das
altered actin cytoskeleton morphology during vegetative growth
2018-01-10T16:46:28Z
An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control.
OMP:0007747
abnormal actin cytoskeleton morphology during vegetative cell growth
microbial_phenotype
siegele
FYPO:0000350
abnormal actin cytoskeleton morphology during vegetative cell growth
An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control.
OMP:das
cellular physical quality phenotype during vegetative growth
2018-01-10T17:26:54Z
A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle.
OMP:0007748
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle.
FYPO:0001321
OMP:das
altered cellular physical quality phenotype during vegetative growth
2018-01-10T17:32:50Z
A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control.
OMP:0007749
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control.
OMP:das
subcellular component phenotype
2018-01-10T17:44:33Z
A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part.
OMP:0007750
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part.
OMP:das
altered subcellular component phenotype
2018-01-10T17:46:52Z
A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control.
OMP:0007751
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
abnormal subcellular component
microbial_phenotype
siegele
FYPO:0007751
abnormal subcellular component
A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control.
OMP:das
altered cytoskeleton
2018-01-10T17:50:16Z
A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control.
OMP:0007752
abnormal cytoskeleton
microbial_phenotype
siegele
FYPO:0002397
abnormal cytoskeleton
A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control.
OMP:das
altered actin cytoskeleton
2018-01-10T17:57:03Z
A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
OMP:0007753
abnormal actin cytoskeleton
microbial_phenotype
siegele
FYPO:0005665
abnormal actin cytoskeleton
A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
OMP:das
cytoskeleton phenotype
2018-01-10T18:39:44Z
A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell.
OMP:0007754
microbial_phenotype
siegele
A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell.
OMP:das
altered actin cytoskeleton during vegetative growth
2018-01-10T18:48:38Z
A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
OMP:0007755
abnormal actin cytoskeleton during vegetative growth
microbial_phenotype
siegele
FYPO:0002398
abnormal actin cytoskeleton during vegetative growth
A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
OMP:das
stubby vegetative cell
2018-01-20T00:04:25Z
An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control.
OMP:0007756
microbial_phenotype
siegele
An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control.
FYPO:0000024
OMP:das
more rounded vegetative cell
2018-01-20T00:23:41Z
An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells.
OMP:0007757
microbial_phenotype
more spherical vegetative cell
siegele
spheroid vegetative cell
FYPO:0000021
spheroid vegetative cell
An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells.
OMP:das
actin cytoskeleton phenotype
2018-02-24T23:27:37Z
A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell.
OMP:0007758
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell.
OMP:das
microtubule cytoskeleton phenotype
2018-02-24T23:27:37Z
A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell.
OMP:0007759
microbial_phenotype
siegele
A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell.
OMP:das
altered actin cytoskeleton
2018-02-24T23:35:18Z
An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
OMP:0007760
abnormal actin cytoskeleton
microbial_phenotype
siegele
FYPO:0005665
abnormal actin cytoskeleton
An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
OMP:das
altered microtubule cytoskeleton
2018-02-24T23:37:57Z
A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control.
OMP:0007761
abnormal microtubule cytoskeleton
microbial_phenotype
siegele
FYPO:0002399
abnormal microtubule cytoskeleton
A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control.
OMP:das
presence of microtubule cytoskeleton
2018-02-24T23:40:45Z
A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton.
OMP:0007762
microbial_phenotype
siegele
A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton.
OMP:das
absence of microtubule cytoskeleton
2018-02-24T23:40:45Z
A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton.
OMP:0007763
microbial_phenotype
siegele
A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton.
OMP:das
altered microtubule cytoskeleton morphology
2018-02-24T23:40:45Z
A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control.
OMP:0007764
microbial_phenotype
siegele
A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control.
OMP:das
altered actin cortical patch localization
2018-02-24T23:59:02Z
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control.
OMP:0007765
abnormal actin cortical patch localization
microbial_phenotype
siegele
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control.
OMP:das
FYPO:0000190
abnormal actin cortical patch localization
subcellular component phenotype during vegetative growth
2018-03-13T00:37:46Z
A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle.
OMP:0007766
microbial_phenotype
siegele
A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle.
FYPO:0001313
OMP:das
altered subcellular component phenotype during vegetative growth
2018-03-13T00:41:59Z
A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control.
OMP:0007767
abnormal subcellular component during vegetative growth
microbial_phenotype
siegele
FYPO:0001322
abnormal subcellular component during vegetative growth
A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control.
OMP:das
altered septum during vegetative growth
2018-03-13T00:45:10Z
A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control.
OMP:0007768
abnormal septum during vegetative growth
microbial_phenotype
siegele
A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control.
OMP:das
FYPO:0002455
abnormal septum during vegetative growth
altered septum morphology during vegetative growth
2018-03-13T00:45:27Z
A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control.
OMP:0007769
abnormal septum morphology during vegetative growth
microbial_phenotype
siegele
FYPO:0002023
abnormal septum morphology during vegetative growth
A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control.
OMP:das
multiseptate vegetative cell
2018-03-13T01:01:28Z
An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell.
OMP:0007770
microbial_phenotype
multiseptate vegetative cell
siegele
An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell.
FYPO:0000118
OMP:das
FYPO:0000118
multiseptate vegetative cell
presence of population growth at alkaline pH
2018-04-28T15:51:32Z
A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
OMP:0007771
microbial_phenotype
siegele
A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
OMP:das
altered vegetative population growth
2018-04-07T23:03:53Z
A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control.
OMP:0007772
microbial_phenotype
siegele
A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control.
OMP:das
presence of population growth on defined medium
2018-04-28T16:17:10Z
A population growth phenotype where a microbial population is able to grow on a defined medium.
OMP:0007773
microbial_phenotype
siegele
A population growth phenotype where a microbial population is able to grow on a defined medium.
OMP:DAS
population growth on defined medium phenotype
2018-04-28T16:19:32Z
A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium.
OMP:0007774
microbial_phenotype
siegele
A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium.
OMP:das
altered population growth on defined medium
2018-04-28T16:20:12Z
A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control.
OMP:0007775
microbial_phenotype
siegele
A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control.
OMP:das
decreased population growth on defined medium
2018-04-28T16:22:29Z
An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control.
OMP:0007776
microbial_phenotype
siegele
An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control.
OMP:das
abolished population growth on defined medium
2018-04-28T16:23:22Z
An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished.
OMP:0007777
microbial_phenotype
siegele
An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished.
OMP:das
increased population growth on defined medium
2018-04-28T16:23:56Z
A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control.
OMP:0007778
microbial_phenotype
siegele
A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control.
OMP:das
absence of population growth on defined medium
2018-04-28T16:25:49Z
A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium.
OMP:0007779
microbial_phenotype
siegele
A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium.
OMP:das
absence of microbial vegetative cell viability
2018-06-08T17:22:34Z
A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions.
OMP:0007780
microbial_phenotype
siegele
A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions.
FYPO:0001489
OMP:das
septation following abnormal chromosome segregation during vegetative growth
2018-06-08T17:31:26Z
A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells.
OMP:0007781
microbial_phenotype
septation following abnormal mitotic chromosome segregation
siegele
FYPO:0000323
septation following abnormal mitotic chromosome segregation
A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells.
FYPO:0000323
OMP:das
cut cell
2018-06-08T17:41:11Z
A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells.
OMP:0007782
cut
microbial_phenotype
siegele
FYPO:0003165
cut
A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells.
FYPO:0003165
OMP:das
cellular process phenotype during vegetative growth
2018-06-09T19:27:13Z
A phenotype that affects a cellular process in the vegetative phase of the life cycle.
OMP:0007783
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
cellular process phenotype during vegetative growth
microbial_phenotype
siegele
A phenotype that affects a cellular process in the vegetative phase of the life cycle.
FYPO:0001331
OMP:das
FYPO:0001331
cellular process phenotype during vegetative growth
altered cellular process during vegetative growth
2018-06-09T19:29:28Z
A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control.
OMP:0007784
abnormal cellular process during vegetative growth
microbial_phenotype
siegele
A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control.
OMP:das
FYPO:0001362
abnormal cellular process during vegetative growth
presence of cellular process during vegetative growth
2018-06-09T19:29:58Z
OMP:0007785
microbial_phenotype
siegele
absence of cellular process during vegetative growth
2018-06-09T19:30:25Z
A microbial phenotype where a microbe does not carry out the specified cellular process.
OMP:0007786
microbial_phenotype
siegele
A microbial phenotype where a microbe does not carry out the specified cellular process.
OMP:das
presence of cell separation after cell division during vegetative growth
2018-06-09T19:32:40Z
OMP:0007787
microbial_phenotype
siegele
altered cell separation after cell division during vegetative growth
2018-06-09T19:33:12Z
A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control.
OMP:0007788
abnormal cell separation after cytokinesis
microbial_phenotype
siegele
FYPO:0000164
abnormal cell separation after cytokinesis
A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control.
OMP:das
abolished cell separation after cell division during vegetative growth
2018-06-09T19:52:36Z
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished.
OMP:0007789
abolished cell separation after cytokinesis
microbial_phenotype
siegele
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished.
FYPO:0006557
OMP:das
FYPO:0006557
abolished cell separation after cytokinesis
decreased frequency of cell separation after cell division during vegetative growth
2018-06-09T20:00:05Z
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells.
OMP:0007790
microbial_phenotype
siegele
A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells.
OMP:das
dispersed actin cortical patch localization
2018-06-10T01:59:18Z
A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends.
OMP:0007791
dispersed actin cortical patch localization
microbial_phenotype
siegele
FYPO:0002021
dispersed actin cortical patch localization
A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends.
FYPO:0002021
OMP:das
absence of cell separation after cell division during vegetative growth
2018-06-10T02:08:44Z
A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division.
OMP:0007792
microbial_phenotype
siegele
A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division.
OMP:das
presence of vegetative cell population growth
2018-06-10T21:18:22Z
A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number.
OMP:0007793
microbial_phenotype
siegele
A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number.
OMP:das
cell population growth phenotype
2018-06-10T23:16:48Z
A cell population phenotype that affects the rate or extent of growth of a population of microbial cells.
OMP:0007794
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
cell population growth phenotype
microbial_phenotype
siegele
FYPO:0000139
cell population growth phenotype
A cell population phenotype that affects the rate or extent of growth of a population of microbial cells.
FYPO:0000139
OMP:das
vegetative cell population growth phenotype
2018-06-11T00:02:40Z
A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle.
OMP:0007795
microbial_phenotype
siegele
vegetative cell population growth phenotype
FYPO:0000139
vegetative cell population growth phenotype
A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle.
FYPO:0000139
OMP:das
presence of vegetative cell population growth
2018-06-12T00:51:39Z
OMP:0007796
microbial_phenotype
siegele
absence of vegetative cell population growth
2018-06-12T00:51:39Z
OMP:0007797
microbial_phenotype
siegele
altered vegetative cell population growth
2018-06-12T00:51:39Z
OMP:0007798
microbial_phenotype
siegele
decreased vegetative cell population growth at high temperature
2018-06-12T00:51:53Z
A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control.
OMP:0007799
decreased vegetative cell population growth at high temperature
microbial_phenotype
siegele
FYPO:0000082
decreased vegetative cell population growth at high temperature
A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control.
FYPO:0000082
OMP:das
polyether antimicrobial resistance phenotype
2018-06-18T03:07:12Z
OMP:0000274
OMP:0007800
This term and its children were deemed to be too granular. Instead, use one of the children of OMP:0000274 antimicrobial agent resistance phenotype and enter database identifier for A22 in the Annotation Extension field.
OMP:0007876 resistant to an antimicrobial agent
OMP:0007877 not resistant to an antimicrobial agent
OMP:0007134 altered resistance to an antimicrobial agent
OMP:0007878 increased resistance to an antimicrobial agent
OMP:000 7879 decreased resistance to an antimicrobial agent
OMP:0007880 abolished resistance to an antimicrobial agent
microbial_phenotype
siegele
true
altered vegetative cell population growth rate
2018-06-19T15:14:26Z
OMP:0007801
dsiegele
microbial_phenotype
increased vegetative cell population growth rate
2018-06-19T15:15:58Z
OMP:0007802
dsiegele
microbial_phenotype
decreased vegetative cell population growth rate
2018-06-19T15:15:58Z
OMP:0007803
dsiegele
microbial_phenotype
increased vegetative cell population viability
2018-06-19T15:45:43Z
An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control.
OMP:0007804
dsiegele
microbial_phenotype
An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control.
OMP:das
increased cell population viability upon starvation
2018-06-19T15:46:20Z
An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control.
OMP:0007805
dsiegele
microbial_phenotype
An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control.
OMP:das
increased cell population viability upon nitrogen starvation
2018-06-19T15:48:36Z
An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control.
OMP:0007806
dsiegele
increased viability upon nitrogen starvation
microbial_phenotype
An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control.
FYPO:0004344
OMP:das
FYPO:0004344
increased viability upon nitrogen starvation
decreased cell population viablity upon starvation
2018-06-19T15:53:27Z
OMP:0007807
dsiegele
microbial_phenotype
decreased cell population viability upon nitrogen starvation
2018-06-19T15:53:53Z
An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control.
OMP:0007808
dsiegele
loss of viability upon nitrogen starvation
microbial_phenotype
An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control.
OMP:das
FYPO:1178
loss of viability upon nitrogen starvation
altered cell population growth
2018-06-19T16:14:57Z
A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control.
OMP:0007809
dsiegele
microbial_phenotype
A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control.
OMP:das
cell population growth rate phenotype
2018-06-19T16:39:59Z
OMP:0007810
dsiegele
microbial_phenotype
cellular pigment accumulation phenotype
2018-06-20T14:50:41Z
A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell.
OMP:0007811
cellular pigment accumulation phenotype
dsiegele
microbial_phenotype
FYPO:0000739
cellular pigment accumulation phenotype
A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell.
OMP:das
presence of cellular pigment accumulation
2018-06-20T14:55:08Z
A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism.
OMP:0007812
dsiegele
microbial_phenotype
normal cellular pigment accumulation
A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism.
OMP:das
FYPO:0000740
normal cellular pigment accumulation
presence of cellular pigment accumulation during vegetative growth
2018-06-20T14:58:28Z
A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment.
OMP:0007813
dsiegele
microbial_phenotype
normal cellular pigment accumulation
A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment.
OMP:das
FYPO:0000740
normal cellular pigment accumulation
altered cellular pigment accumulation
2018-06-20T15:08:52Z
A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control.
OMP:0007814
dsiegele
microbial_phenotype
A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control.
OMP:das
increased cellular pigment accumulation
2018-06-20T15:11:51Z
An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
OMP:0007815
dsiegele
microbial_phenotype
An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
OMP:das
increased cellular pigment accumulation
2018-06-20T15:15:14Z
An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
OMP:0007816
dsiegele
increased cellular pigment accumulation
microbial_phenotype
FYPO:0000741
increased cellular pigment accumulation
An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
OMP:das
decreased cellular pigment accumulation
2018-06-20T15:20:02Z
An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
OMP:0007817
dsiegele
microbial_phenotype
An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
OMP:das
decreased cellular pigment accumulation during vegetative growth
2018-06-20T15:20:42Z
An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
OMP:0007818
dsiegele
microbial_phenotype
An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
OMP:das
absence of cellular pigment accumulation
2018-06-20T15:29:44Z
A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism.
OMP:0007819
dsiegele
microbial_phenotype
A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism.
OMP:das
absence of cellular pigment accumulation during vegetative growth
2018-06-20T15:31:24Z
A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism.
OMP:0007820
dsiegele
microbial_phenotype
A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism.
OMP:das
nitrofuran resistance phenotype
2018-06-21T22:05:44Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group.
OMP:0007821
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
difurazone (Nitrovin) resistance phenotype
microbial_phenotype
nitrofuran sensitivity phenotype
nitrofurantoin resistance phenotype
nitrofurazone resistance phenotype
siegele
CHEBI:44368
nitrofurazone resistance phenotype
CHEBI:71415
nitrofurantoin resistance phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group.
CHEBI:87230
OMP:das
resistant to nitrofuran
2018-06-21T22:07:43Z
A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds.
OMP:0007822
microbial_phenotype
siegele
A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds.
OMP:das
not resistant to nitrofuran
2018-06-21T22:07:43Z
A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds.
OMP:0007823
microbial_phenotype
siegele
A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds.
OMP:das
altered nitrofuran resistance
2018-06-21T22:07:43Z
A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control.
OMP:0007824
microbial_phenotype
siegele
A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control.
OMP:das
decreased resistance to nitrofuran
2018-06-21T22:14:44Z
An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control.
OMP:0007825
increased sensitivity to nitrofuran
microbial_phenotype
siegele
An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control.
OMP:das
abolished resistance to nitrofuran
2018-06-21T22:15:06Z
An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished.
OMP:0007826
microbial_phenotype
siegele
An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished.
OMP:das
increased resistance to nitrofuran
2018-06-21T22:15:28Z
An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control.
OMP:0007827
decreased sensitivity to nitrofuran
microbial_phenotype
siegele
An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control.
OMP:das
sulfonamide antimicrobial agent resistance phenotype
2018-06-22T00:39:30Z
An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group.
OMP:0007828
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
sulfamethizole resistance phenotype
sulfamonomethoxine resistance phenotype
sulfonamide sensitivity phenotype
An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group.
CHEBI:35358
OMP:das
CHEBI:32164
sulfamonomethoxine resistance phenotype
CHEBI:9331
sulfamethizole resistance phenotype
resistant to sulfonamide antimicrobial agent
2018-06-22T00:47:21Z
A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent.
OMP:0007829
microbial_phenotype
siegele
A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent.
OMP:das
not resistant to a sulfonamide antimicrobial agent
2018-06-22T00:47:21Z
A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent.
OMP:0007830
microbial_phenotype
siegele
A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent.
OMP:das
altered resistance to a sulfonamide antimicrobial agent
2018-06-22T00:47:21Z
A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control.
OMP:0007831
microbial_phenotype
siegele
A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control.
OMP:das
increased resistance to sulfonamide
2018-06-22T00:47:21Z
An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control.
OMP:0007832
decreased sensitivity to sulfonamide antimicrobial agent
microbial_phenotype
siegele
An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control.
OMP:das
decreased resistance to sulfonamde
2018-06-22T00:47:21Z
An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control.
OMP:0007833
increased sensitivity to sulfonamide
microbial_phenotype
siegele
An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control.
OMP:das
abolished resistance to sulfonamide
2018-06-22T00:47:21Z
A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished.
OMP:0007834
microbial_phenotype
siegele
A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished.
OMP:das
spore viability phenotype
2018-06-25T10:35:25Z
A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions.
OMP:0007835
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
microbial_phenotype
siegele
A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions.
OMP:das
viable spore
2018-06-25T10:37:49Z
A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions.
OMP:0007836
microbial_phenotype
siegele
A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions.
OMP:das
nonviable spore
2018-06-25T10:39:27Z
A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate.
OMP:0007837
microbial_phenotype
siegele
A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate.
FYPO:0002151
OMP:das
altered spore viability
2018-06-25T16:17:02Z
A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control.
OMP:0007838
microbial_phenotype
siegele
A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control.
OMP:das
decreased spore viability
2018-06-25T16:18:49Z
An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control.
OMP:0007839
microbial_phenotype
siegele
An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control.
OMP:das
increased spore viability
2018-06-25T16:18:49Z
An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control.
OMP:0007840
microbial_phenotype
siegele
An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control.
OMP:das
increased viability of vegetative microbial cell
2018-06-25T17:18:58Z
An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control.
OMP:0007841
microbial_phenotype
siegele
An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control.
OMP:das
presence of germ tube
2018-06-27T00:14:46Z
A cell morphology phenotype where a germinating microbial spore has a germ tube.
OMP:0007842
microbial_phenotype
siegele
A cell morphology phenotype where a germinating microbial spore has a germ tube.
OMP:das
absence of germ tube
2018-06-27T00:14:46Z
A cell morphology phenotype where a germinating microbial spore lacks a germ tube.
OMP:0007843
microbial_phenotype
siegele
A cell morphology phenotype where a germinating microbial spore lacks a germ tube.
OMP:das
curved germ tube morphology
2018-06-27T00:27:16Z
An altered germ tube morphology phenotype where the germ tube is curved along its long axis.
OMP:0007844
microbial_phenotype
siegele
An altered germ tube morphology phenotype where the germ tube is curved along its long axis.
OMP:das
unseptated germ tube
2018-06-27T20:58:20Z
An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell.
OMP:0007845
microbial_phenotype
siegele
An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell.
FYPO:0000311
OMP:das
organic cyclic antimicrobial agent resistance phenotype
2018-06-30T21:27:43Z
An antimicrobial agent resistance phenotype
OMP:0007846
microbial_phenotype
siegele
An antimicrobial agent resistance phenotype
CHEBI:33832
OMP:das
fosfomycin resistance phenotype
2018-07-24T19:34:05Z
An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin.
OMP:0007847
fosfomycin resistance phenotype
fosfomycin sensitivity phenotype
microbial_phenotype
siegele
An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin.
CHEBI:26069
OMP:das
CHEBI:28915
fosfomycin resistance phenotype
phenolic chemical resistance phenotype
2018-07-26T17:28:29Z
A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
OMP:0007848
epigallocatechin gallate (EGCG) chemical resistance phenotype
microbial_phenotype
phenol red chemical resistance phenotype
rose bengal chemical resistance phenotype
siegele
CHEBI:31991
phenol red chemical resistance phenotype
A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
CHEBI:33853
OMP:das
CHEBI:52261
rose bengal chemical resistance phenotype
CHEBI::4806
epigallocatechin gallate (EGCG) chemical resistance phenotype
absence of organic carbon source utilization
2018-07-27T16:15:15Z
OMP:0007849
dsiegele
microbial_phenotype
absence of inorganic carbon source utilization
2018-07-27T16:15:15Z
OMP:0007850
dsiegele
microbial_phenotype
mixotrophic energy metabolism
2018-07-27T16:29:26Z
A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth.
OMP:0007851
dsiegele
microbial_phenotype
mixotrophy
A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth.
OMP:das
increased inorganic carbon source utilization
2018-07-27T16:33:19Z
An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control.
OMP:0007852
dsiegele
microbial_phenotype
An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control.
OMP:das
decreased inorganic carbon source utilization
2018-07-27T16:33:19Z
An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control.
OMP:0007853
dsiegele
microbial_phenotype
An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control.
OMP:das
abolished inorganic carbon source utilization
2018-07-27T16:33:19Z
A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished.
OMP:0007854
dsiegele
microbial_phenotype
A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished.
OMP:das
fosmidomycin antimicrobial agent resistance phenotype
2018-07-27T17:59:33Z
An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin.
OMP:0007855
dsiegele
microbial_phenotype
An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin.
CHEBI:443725
OMP:das
presence of fosfomycin resistance
2018-07-27T18:05:19Z
An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin.
OMP:0007856
dsiegele
microbial_phenotype
An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin.
OMP:das
absence of fosfomycin resistance
2018-07-27T18:05:19Z
An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin.
OMP:0007857
dsiegele
microbial_phenotype
An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin.
OMP:das
altered fosfomycin resistance
2018-07-27T18:05:19Z
A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control.
OMP:0007858
dsiegele
microbial_phenotype
A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control.
OMP:das
increased resistance to fosfomycin
2018-07-27T18:05:19Z
An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control.
OMP:0007859
dsiegele
microbial_phenotype
An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control.
OMP:das
decreased resistance to fosfomycin
2018-07-27T18:05:19Z
An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control.
OMP:0007860
dsiegele
microbial_phenotype
An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control.
OMP:das
abolished fosfomycin resistance
2018-07-27T18:05:19Z
A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished.
OMP:0007861
dsiegele
microbial_phenotype
A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished.
OMP:das
bicyclomycin antimicrobial agent resistance phenotype
2018-07-29T21:34:15Z
OMP:0000274
OMP:0007862
The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.
OMP:0007876 resistant to an antimicrobial agent
OMP:0007877 not resistant to an antimicrobial agent
OMP:0007134 altered resistance to an antimicrobial agent
OMP:0007878 increased resistance to an antimicrobial agent
OMP:000 7879 decreased resistance to an antimicrobial agent
OMP:0007880 abolished resistance to an antimicrobial agent
microbial_phenotype
siegele
true
presence of resistance to bicyclomycin
2018-07-29T21:34:15Z
OMP:0007863
OMP:0007876
microbial_phenotype
siegele
true
absence of resistance to bicyclomycin
2018-07-29T21:34:15Z
OMP:0007864
OMP:0007877
microbial_phenotype
siegele
true
altered resistance to bicyclomycin
2018-07-29T21:34:15Z
OMP:0007134
OMP:0007865
microbial_phenotype
siegele
true
decreased resistance to bicyclomycin
2018-07-29T21:34:15Z
OMP:0007866
OMP:0007879
microbial_phenotype
siegele
true
abolished resistance to bicyclomycin
2018-07-29T21:34:15Z
OMP:0007867
OMP:0007880
The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.
microbial_phenotype
siegele
true
increased resistance to bicyclomycin
2018-07-29T21:34:15Z
OMP:0007868
OMP:0007878
microbial_phenotype
siegele
true
A22 antimicrobial agent resistance phenotype
2018-07-29T22:21:01Z
OMP:0000274
OMP:0007869
The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.
OMP:0007876 resistant to an antimicrobial agent
OMP:0007877 not resistant to an antimicrobial agent
OMP:0007134 altered resistance to an antimicrobial agent
OMP:0007878 increased resistance to an antimicrobial agent
OMP:000 7879 decreased resistance to an antimicrobial agent
OMP:0007880 abolished resistance to an antimicrobial agent
amino[sulfanyl]methaniminiumchloride antimicrobial agent resistance phenotype
microbial_phenotype
siegele
true
presence of resistance to A22
2018-07-29T22:22:16Z
OMP:0007870
OMP:0007876
This term and was deemed to be too granular. In its place, use OMP:0007876 resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
microbial_phenotype
siegele
true
absence of resistance to A22
2018-07-29T22:22:16Z
OMP:0007871
OMP:0007877
This term was deemed to be too granular. In its place, use OMP:0007877 not resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
microbial_phenotype
siegele
true
increased resistance to A22
2018-07-29T22:22:16Z
OMP:0007872
OMP:0007878
This term and was deemed to be too granular. Instead, use OMP:0007878 increased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
microbial_phenotype
siegele
true
decreased resistance to A22
2018-07-29T22:22:16Z
OMP:0007873
OMP:0007879
This term and was deemed to be too granular. In its place, use OMP:000 7879 decreased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
microbial_phenotype
siegele
true
abolished resistance to A22
2018-07-29T22:22:16Z
OMP:0007874
OMP:0007880
The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.
microbial_phenotype
siegele
true
altered resistance to A22
2018-07-29T22:22:16Z
OMP:0007134
OMP:0007875
This term and was deemed to be too granular. In its place, use OMP:0007134 altered resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
microbial_phenotype
siegele
true
resistant to an antimicrobial agent
2018-08-17T17:22:51Z
An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field.
OMP:0007876
dsiegele
microbial_phenotype
not sensitive to an antimicrobial agent
An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field.
OMP:das
not resistant to an antimicrobial agent
2018-08-17T17:25:08Z
An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field.
OMP:0007877
dsiegele
microbial_phenotype
sensitive to an antimicrobial agent
An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field.
OMP:das
increased resistance to an antimicrobial agent
2018-08-17T17:26:30Z
An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control.
OMP:0007878
dsiegele
microbial_phenotype
An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control.
OMP:das
decreased resistance to an antimicrobial agent
2018-08-17T17:26:30Z
An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control.
OMP:0007879
dsiegele
microbial_phenotype
An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control.
OMP:das
abolished resistance to an antimicrobial agent
2018-08-17T17:26:45Z
A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished.
OMP:0007880
dsiegele
microbial_phenotype
A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished.
OMP:das
host defense peptides resistance phenotype
2018-08-17T18:21:52Z
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host.
OMP:0007881
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
cecropin resistance phenotype
defensin resistance phenotype
dsiegele
host defense peptides sensitivity phenotype
microbial_phenotype
An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host.
OMP:das
abolished resistance to host defense peptides
2018-08-17T18:31:14Z
A decreased resistance to host defense peptide phenotype where resistance is abolished.
OMP:0007882
dsiegele
microbial_phenotype
A decreased resistance to host defense peptide phenotype where resistance is abolished.
OMP:das
abolished chemical resistance
2018-08-17T19:14:42Z
A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished.
OMP:0007883
dsiegele
microbial_phenotype
A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished.
OMP:das
resistant to a metal
2018-08-22T15:48:22Z
A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal.
OMP:0007884
dsiegele
microbial_phenotype
A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal.
OMP:das
not resistant to a metal
2018-08-22T15:53:56Z
A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal.
OMP:0007885
dsiegele
microbial_phenotype
sensitive to a metal
A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal.
OMP:das
decreased resistance to a metal
2018-08-22T15:54:29Z
A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control.
OMP:0007886
dsiegele
increased sensitivity to a metal
microbial_phenotype
A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control.
OMP:das
abolished resistance to a metal
2018-08-22T15:54:56Z
A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished.
OMP:0007887
dsiegele
microbial_phenotype
A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished.
OMP:das
increased resistance to a metal
2018-08-22T15:55:19Z
A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control.
OMP:0007888
decreased sensitivity to a metal
dsiegele
microbial_phenotype
A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control.
OMP:das
altered resistance to a metal
2018-08-22T15:56:07Z
A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control.
OMP:0007889
altered sensitivity to a metal
dsiegele
microbial_phenotype
A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control.
OMP:das
metal resistance phenotype
2018-08-22T18:04:54Z
A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal.
OMP:0007890
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
metal sensitivity phenotype
microbial_phenotype
siegele
A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal.
CHEBI:33521
OMP:das
surfactant resistance phenotype
2018-08-22T18:12:18Z
A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces.
OMP:0007891
benzalkonium chloride resistance phenotype
detergent resistance phenotype
microbial_phenotype
siegele
A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces.
CHEBI:35195
OMP:das
CHEBI:3020
benzalkonium chloride resistance phenotype
resistant to a surfactant
2018-08-22T18:13:28Z
A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant.
OMP:0007892
microbial_phenotype
not sensitive to a surfactant
siegele
A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant.
OMP:das
not resistant to a surfactant
2018-08-22T18:13:28Z
A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant.
OMP:0007893
microbial_phenotype
sensitive to a surfactant
siegele
A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant.
OMP:das
altered resistance to a surfactant
2018-08-22T18:13:28Z
A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control.
OMP:0007894
microbial_phenotype
siegele
A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control.
OMP:das
increased resistance to a surfactant
2018-08-22T18:13:58Z
An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control.
OMP:0007895
decreased sensitivity to a surfactant
microbial_phenotype
siegele
An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control.
OMP:das
decreased resistance to a surfactant
2018-08-22T18:13:58Z
An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control.
OMP:0007896
increased sensitivity to a surfactant
microbial_phenotype
siegele
An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control.
OMP:das
abolished resistance to a surfactant
2018-08-22T18:13:58Z
A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished.
OMP:0007897
microbial_phenotype
siegele
A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished.
OMP:das
bile acids resistance phenotype
2018-08-23T15:36:18Z
A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids.
OMP:0007898
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
bile acid sensitivity phenotype
bile salt resistance phenotype
microbial_phenotype
siegele
A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids.
CHEBI:138366
OMP:das
resistant to bile acids
2018-08-23T16:11:39Z
A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids.
OMP:0007899
microbial_phenotype
siegele
A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids.
OMP:das
not resistant to bile acids
2018-08-23T16:11:39Z
A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids.
OMP:0007900
microbial_phenotype
sensitive to bile acids
siegele
A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids.
OMP:das
altered resistance to bile acids
2018-08-23T16:11:39Z
A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control.
OMP:0007901
altered sensitivity to bile acids
microbial_phenotype
siegele
A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control.
OMP:das
increased resistance to bile acids
2018-08-23T16:11:39Z
An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control.
OMP:0007902
decreased sensitivity to bile acids
microbial_phenotype
siegele
An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control.
OMP:das
decreased resistance to bile acids
2018-08-23T16:11:39Z
An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control.
OMP:0007903
increased sensitivity to bile acids
microbial_phenotype
siegele
An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control.
OMP:das
abolished resistance to bile acids
2018-08-23T16:11:39Z
A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished.
OMP:0007904
microbial_phenotype
siegele
A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished.
OMP:das
altered nitrogen source utilization
2018-08-24T12:33:54Z
OMP:0007905
microbial_phenotype
siegele
altered organic nitrogen source utilization
2018-08-24T12:37:35Z
OMP:0007906
microbial_phenotype
siegele
presence of biofilm formation
2018-08-26T19:22:17Z
A biofilm formation phenotype where a microbe is capable of forming a biofilm.
OMP:0007907
microbial_phenotype
siegele
A biofilm formation phenotype where a microbe is capable of forming a biofilm.
OMP:das
chelator resistance phenotype
2018-08-24T16:59:36Z
OMP:0007908
microbial_phenotype
siegele
resistant to a chelator
2018-08-24T17:00:53Z
OMP:0007909
microbial_phenotype
siegele
not resistant to a chelator
2018-08-24T17:00:53Z
OMP:0007910
microbial_phenotype
siegele
altered resistance to a chelator
2018-08-24T17:00:53Z
OMP:0007911
microbial_phenotype
siegele
decreased resistance to a chelator
2018-08-24T17:00:53Z
OMP:0007912
microbial_phenotype
siegele
increased resistance to a chelator
2018-08-24T17:00:53Z
OMP:0007913
microbial_phenotype
siegele
abolished resistance to a chelator
2018-08-24T17:01:28Z
OMP:0007914
microbial_phenotype
siegele
absence of biofilm formation
2018-08-26T19:22:17Z
A biofilm formation phenotype where a microbe is incapable of forming a biofilm.
OMP:0007915
microbial_phenotype
siegele
A biofilm formation phenotype where a microbe is incapable of forming a biofilm.
OMP:das
decreased vegetative cell diameter
2018-09-05T14:59:12Z
An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control.
OMP:0007916
microbial_phenotype
siegele
An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control.
OMP:das
cell size variability
2018-09-05T15:18:58Z
A cell population phenotype that describes the extent of cell size variability within a growing microbial cell population.
OMP:0007917
microbial_phenotype
siegele
altered cell size variability within a cell population
2018-09-05T15:21:39Z
OMP:0007918
microbial_phenotype
siegele
presence of cell population growth
2018-09-05T15:58:51Z
OMP:0007919
microbial_phenotype
siegele
absence of cell population growth
2018-09-05T15:59:26Z
OMP:0007920
microbial_phenotype
siegele
presence of cell size variability within a cell population
2018-09-05T16:06:50Z
OMP:0007921
microbial_phenotype
siegele
absence of cell size variability within a cell population
2018-09-05T16:07:15Z
OMP:0007922
microbial_phenotype
siegele
decreased cell size variability within a cell population
2018-09-05T16:08:39Z
OMP:0007923
microbial_phenotype
siegele
increased cell size variability within a cell population
2018-09-05T16:08:39Z
OMP:0007924
microbial_phenotype
siegele
abolished cell size variability within a cell population
2018-09-05T16:08:39Z
OMP:0007925
microbial_phenotype
siegele
increased anaerobic population growth
2018-09-05T16:39:27Z
Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control.
OMP:0007926
microbial_phenotype
siegele
An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control.
OMP:das
decreased anaerobic population growth
2018-09-05T16:39:27Z
Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control.
OMP:0007927
microbial_phenotype
siegele
An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control.
OMP:das
commonly used descriptors
2018-09-06T17:18:16Z
Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group.
OMP:0007928
microbial_phenotype
siegele
Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group.
OMP:das
decreased microaerophilic population growth
2018-09-07T18:13:30Z
A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
OMP:0007929
microbial_phenotype
siegele
A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
OMP:das
increased microaerophilic population growth
2018-09-07T18:14:29Z
Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
OMP:0007930
microbial_phenotype
siegele
An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
OMP:das
altered population phenotype
2018-09-15T01:45:33Z
A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control.
OMP:0007931
microbial_phenotype
siegele
A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control.
OMP:das
resistance to nutrient limitation stress phenotype
2018-11-04T16:55:30Z
A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient.
OMP:0007932
microbial_phenotype
siegele
A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient.
OMP:das
presence of resistance to nutrient limitation
2018-11-04T16:56:28Z
A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient.
OMP:0007933
microbial_phenotype
siegele
A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient.
OMP:das
absence of resistance to nutrient limitation
2018-11-04T16:56:28Z
A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient.
OMP:0007934
microbial_phenotype
siegele
A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient.
OMP:das
altered resistance to nutrient limitation
2018-11-04T16:56:28Z
A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control.
OMP:0007935
microbial_phenotype
siegele
A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control.
OMP:das
increased resistance to nutrient limitation
2018-11-04T16:56:35Z
OMP:0007936
microbial_phenotype
siegele
decreased resistance to nutrient limitation
2018-11-04T16:56:58Z
OMP:0007937
microbial_phenotype
siegele
abolished resistance to nutrient limitation
2018-11-04T16:57:25Z
OMP:0007938
microbial_phenotype
siegele
increased ploidy in a vegetative microbial cell
2019-02-01T15:05:44Z
A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control.
OMP:0007939
microbial_phenotype
siegele
A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control.
OMP:das
increased spontaneous diploidization in a vegetative microbial cell
2019-02-01T15:11:39Z
An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control.
OMP:0007940
increased spontaneous diploidization
microbial_phenotype
siegele
An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control.
FYPO:0000252
OMP:DAS
FYPO:0000252
increased spontaneous diploidization
altered viability after microbial spore germination
2019-02-01T17:20:01Z
OMP:0007941
microbial_phenotype
siegele
increased survival in macrophage
2019-03-27T14:44:53Z
OMP:0007942
dsiegele
microbial_phenotype
decreased survival in macrophage
2019-03-27T14:45:12Z
OMP:0007943
dsiegele
microbial_phenotype
abolished survival in macrophage
2019-03-27T14:45:29Z
OMP:0007944
dsiegele
microbial_phenotype
presence of population growth at acidic pH
2019-09-12T00:41:29Z
A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7).
OMP:0007945
microbial_phenotype
siegele
A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7).
OMP:das
absence of population growth at acidic pH
2019-09-12T00:42:29Z
A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7).
OMP:0007946
microbial_phenotype
siegele
A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7).
OMP:das
presence of growth at alkaline pH
2019-09-12T10:31:33Z
A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
OMP:0007947
This term was made obsolete because it was redundant with OMP:0007771. The two terms weren't merged because the redundancy of OMP:0007947 was discovered after one day and was never committed to a release.
microbial_phenotype
siegele
true
A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
OMP:das
absence of growth at alkaline pH
2019-09-12T10:44:32Z
A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7).
OMP:0007948
microbial_phenotype
siegele
true
A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7).
OMP:das
<new term>
2019-09-13T00:12:25Z
OMP:0007949
microbial_phenotype
siegele
presence of population growth at high temperature
2019-09-13T01:17:11Z
A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
OMP:0007950
microbial_phenotype
siegele
A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
OMP:das
absence of population growth at high temperature
2019-09-13T01:22:12Z
A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
OMP:0007951
microbial_phenotype
siegele
A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
OMP:das
altered population growth at high temperature
2019-09-13T01:24:01Z
A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control.
OMP:0007952
microbial_phenotype
siegele
A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control.
OMP:das
increased population growth at high temperature
2019-09-13T01:25:33Z
OMP:0007953
microbial_phenotype
siegele
decreased population growth at high temperature
2019-09-13T01:25:52Z
OMP:0007954
microbial_phenotype
siegele
abolished population growth at high temperature
2019-09-13T01:26:12Z
OMP:0007955
microbial_phenotype
siegele
presence of population growth at low temperature
2019-09-13T01:41:59Z
OMP:0007956
microbial_phenotype
siegele
absence of population growth at low temperature
2019-09-13T01:41:59Z
OMP:0007957
microbial_phenotype
siegele
altered population growth at low temperature
2019-09-13T01:41:59Z
OMP:0007958
microbial_phenotype
siegele
increased population growth at low temperature
2019-09-13T01:41:59Z
OMP:0007959
microbial_phenotype
siegele
decreased population growth at low temperature
2019-09-13T01:41:59Z
OMP:0007960
microbial_phenotype
siegele
abolished population growth at low temperature
2019-09-13T01:41:59Z
OMP:0007961
microbial_phenotype
siegele
presence of cell population growth during nutrient limitation
2019-09-23T14:17:16Z
A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
OMP:0007962
microbial_phenotype
normal cell population growth during glucose starvation
normal cell population growth during iron starvation
siegele
FYPO:0004765
normal cell population growth during glucose starvation
A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
OMP:das
FYPO:0001814
normal cell population growth during iron starvation
absence of cell population growth during nutrient limitation
2019-09-23T14:22:18Z
A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration).
OMP:0007963
microbial_phenotype
siegele
A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration).
OMP:das
cell population growth during nutrient limitation phenotype
2019-09-23T14:25:30Z
A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
OMP:0007964
microbial_phenotype
siegele
A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
OMP:das
altered cell population growth during nutrient limitation
2019-09-23T14:31:13Z
A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control.
OMP:0007965
microbial_phenotype
siegele
A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control.
OMP:das
increased population growth during nutrient limitation
2019-09-23T14:32:07Z
An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control.
OMP:0007966
increased cell population growth during glucose starvation
increased vegetative cell population growth during phosphate starvation
microbial_phenotype
siegele
An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control.
OMP:das
FYPO:0003938
increased cell population growth during glucose starvation
FYPO:0004967
increased vegetative cell population growth during phosphate starvation
decreased cell population growth during nutrient limitation
2019-09-23T14:33:15Z
An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control.
OMP:0007967
decreased cell population growth during glucose starvation
decreased cell population growth during nitrogen starvation
decreased vegetative cell population growth during phosphate starvation
microbial_phenotype
siegele
FYPO:0000709
decreased cell population growth during nitrogen starvation
FYPO:0004968
decreased vegetative cell population growth during phosphate starvation
FYPO:0003743
decreased cell population growth during glucose starvation
An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control.
OMP:das
abolished population growth during nutrient limitation
2019-09-23T14:34:07Z
A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished.
OMP:0007968
abolished cell population growth during glucose starvation
microbial_phenotype
siegele
FYPO:0004837
abolished cell population growth during glucose starvation
A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished.
OMP:das
presence of organic nitrogen source utilization
2019-11-17T15:43:44Z
OMP:0007969
microbial_phenotype
siegele
absence of organic nitrogen source utilization
2019-11-17T15:43:44Z
OMP:0007970
microbial_phenotype
siegele
tolerance to an antimicrobial agent phenotype
2020-05-08T13:13:10Z
An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK).
OMP:0007971
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Tolerance applies only to microbiocidal antimicrobial agents and not to microbiostatic agents. This is in contrast to resistance which applies to both microbiocidal and microbiostatic agents.
microbial_phenotype
siegele
An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK).
DOI:10.1038/nrmicro.2016.34
OMP:das
PMID:27080241
altered tolerance to an antimicrobial agent phenotype
2020-05-08T13:17:08Z
An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control.
OMP:0007972
microbial_phenotype
siegele
An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control.
OMP:das
increased tolerance to an antimicrobial agent
2020-05-08T13:17:08Z
An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control.
OMP:0007973
microbial_phenotype
siegele
An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control.
OMP:das
decreased tolerance to an antimicrobial agent
2020-05-08T13:17:08Z
An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control.
OMP:0007974
microbial_phenotype
siegele
An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control.
OMP:das
altered cell length
2020-07-22T19:20:08Z
OMP:0007975
microbial_phenotype
siegele
altered cell length variability
2020-07-22T19:21:08Z
OMP:0007976
microbial_phenotype
siegele
altered cell diameter
2020-07-22T19:22:09Z
OMP:0007977
microbial_phenotype
siegele
altered cell diameter variability
2020-07-22T19:22:31Z
OMP:0007978
microbial_phenotype
siegele
increased cell length variability
2020-07-22T19:24:06Z
OMP:0007979
microbial_phenotype
siegele
decreased cell length variability
2020-07-22T19:24:06Z
OMP:0007980
microbial_phenotype
siegele
decreased cell diameter variability
2020-07-22T19:36:15Z
OMP:0007981
microbial_phenotype
siegele
increased cell diameter variability
2020-07-22T19:36:15Z
OMP:0007982
microbial_phenotype
siegele
altered cell area
2020-07-22T20:21:33Z
OMP:0007983
microbial_phenotype
siegele
altered cell area variability
2020-07-22T20:22:13Z
OMP:0007984
microbial_phenotype
siegele
decreased cell area
2020-07-22T20:23:00Z
OMP:0007985
microbial_phenotype
siegele
increased cell area
2020-07-22T20:23:00Z
OMP:0007986
microbial_phenotype
siegele
decreased cell area variability
2020-07-22T20:23:10Z
OMP:0007987
microbial_phenotype
siegele
increased cell area variability
2020-07-22T20:23:34Z
OMP:0007988
microbial_phenotype
siegele
altered cell volume
2020-07-22T20:25:24Z
OMP:0007989
microbial_phenotype
siegele
altered cell volume variability
2020-07-22T20:26:40Z
OMP:0007990
microbial_phenotype
siegele
decreased cell volume variability
2020-07-22T20:27:50Z
OMP:0007991
microbial_phenotype
siegele
increased cell volume variability
2020-07-22T20:27:50Z
OMP:0007992
microbial_phenotype
siegele
altered cell surface area
2020-07-22T20:28:53Z
OMP:0007993
microbial_phenotype
siegele
decreased cell surface area
2020-07-22T20:29:49Z
OMP:0007994
microbial_phenotype
siegele
increased cell surface area
2020-07-22T20:29:49Z
OMP:0007995
microbial_phenotype
siegele
altered cell surface area variability
2020-07-22T20:29:49Z
OMP:0007996
microbial_phenotype
siegele
decreased cell surface area variability
2020-07-22T20:31:33Z
OMP:0007997
microbial_phenotype
siegele
increased cell surface area variability
2020-07-22T20:31:33Z
OMP:0007998
microbial_phenotype
siegele
altered cell surface area-to-volume ratio
2020-07-22T20:32:47Z
OMP:0007999
microbial_phenotype
siegele
spore morphology phenotype
2015-06-03T13:12:00Z
A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe.
FAO:0000019
OMP:0008000
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
kanderson
microbial_phenotype
spore
FAO:0000019
A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe.
OMP:KDA
endospore germ cell wall phenotype
2015-06-08T12:07:41Z
An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination.
OMP:0008001
kanderson
microbial_phenotype
An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination.
OMP:KDA
PMID:3101583
absence of an endospore germ cell wall
2015-06-08T12:10:22Z
An endospore germ cell wall phenotype where an endospore lacks a germ cell wall.
OMP:0008002
kanderson
microbial_phenotype
An endospore germ cell wall phenotype where an endospore lacks a germ cell wall.
OMP:KDA
presence of an endospore germ cell wall
2015-06-08T12:10:22Z
An endospore germ cell wall phenotype where an endospore has a germ cell wall.
OMP:0008003
kanderson
microbial_phenotype
An endospore germ cell wall phenotype where an endospore has a germ cell wall.
OMP:KDA
endospore core phenotype
2015-06-08T12:14:34Z
An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid.
OMP:0008004
kanderson
microbial_phenotype
An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid.
ISBN:9780073402406
OMP:KDA
absence of the endospore core
2015-06-08T12:16:08Z
An endospore core phenotype where an endospore lacks a central core.
OMP:0008005
kanderson
microbial_phenotype
An endospore core phenotype where an endospore lacks a central core.
OMP:KDA
presence of a core
2015-06-08T12:16:08Z
An endospore core phenotype where the central core is present in an endospore.
OMP:0008006
kanderson
microbial_phenotype
An endospore core phenotype where the central core is present in an endospore.
OMP:KDA
endospore coat phenotype
2015-06-08T12:18:25Z
An endospore external encapsulating structure phenotype related to the endospore coat, which is on the exterior of all spores and is composed of many structural proteins that confer additional resistance.
OMP:0008007
kanderson
microbial_phenotype
An endospore external encapsulating structure phenotype related to the endospore coat, which is on the exterior of all spores and is composed of many structural proteins that confer additional resistance.
OMP:KDA
PMID:3101583
absence of an endospore coat
2015-06-08T12:19:49Z
An endospore coat phenotype where an endospore lacks a coat layer.
OMP:0008008
kanderson
microbial_phenotype
An endospore coat phenotype where an endospore lacks a coat layer.
OMP:KDA
presence of an endospore coat
2015-06-08T12:19:49Z
An endospore coat phenotype where an endospore has a coat layer.
OMP:0008009
kanderson
microbial_phenotype
An endospore coat phenotype where an endospore has a coat layer.
OMP:KDA
outer endospore membrane phenotype
2015-06-08T12:21:48Z
An endospore external encapsulating structure phenotype related to the outer endospore membrane, a phospholipid bilayer, derived from the mother cell, located between the endospore cortex and endospore coat.
GO:0043594
OMP:0008010
kanderson
microbial_phenotype
An endospore external encapsulating structure phenotype related to the outer endospore membrane, a phospholipid bilayer, derived from the mother cell, located between the endospore cortex and endospore coat.
GO:0043594
OMP:KDA
PMID:3101583
outer endospore membrane
GO:0043594
absence of an outer endospore membrane
2015-06-08T12:23:37Z
An outer endospore membrane phenotype where an endospore lacks an outer membrane.
OMP:0008011
kanderson
microbial_phenotype
An outer endospore membrane phenotype where an endospore lacks an outer membrane.
OMP:KDA
presence of an outer endospore membrane
2015-06-08T12:23:37Z
An outer endospore membrane phenotype where an endospore has an outer membrane.
OMP:0008012
kanderson
microbial_phenotype
An outer endospore membrane phenotype where an endospore has an outer membrane.
OMP:KDA
endospore internal structure phenotype
2015-06-08T12:43:22Z
An endospore morphology phenotype that relates to the inner membrane or core of an endospore.
OMP:0008013
kanderson
microbial_phenotype
An endospore morphology phenotype that relates to the inner membrane or core of an endospore.
OMP:KDA
inner endospore membrane phenotype
2015-06-08T12:45:57Z
An endospore internal structure phenotype related to the inner membrane, which surrounds the core.
OMP:0008014
kanderson
microbial_phenotype
An endospore internal structure phenotype related to the inner membrane, which surrounds the core.
OMP:KDA
PMID:3101583
absence of an inner endospore membrane
2015-06-08T12:50:07Z
An inner endospore membrane phenotype where an endospore lacks an inner membrane.
OMP:0008015
kanderson
microbial_phenotype
An inner endospore membrane phenotype where an endospore lacks an inner membrane.
OMP:KDA
presence of an inner endospore membrane
2015-06-08T12:50:07Z
An inner endospore membrane phenotype where the endospore has an inner membrane.
OMP:0008016
kanderson
microbial_phenotype
An inner endospore membrane phenotype where the endospore has an inner membrane.
OMP:KDA
endospore formation stopped at stage 0
2015-06-08T13:04:15Z
An interrupted endospore formation phenotype where sporulation is stopped before any visible morphological changes have occurred, and the cell or cells have the appearance of vegetative cells.
In many bacteria, the first visible morphological change in sporulation is formation of an asymmetric septum that separates the mother cell and forespore compartments.
OMP:0008017
kanderson
microbial_phenotype
An interrupted endospore formation phenotype where sporulation is stopped before any visible morphological changes have occurred, and the cell or cells have the appearance of vegetative cells.
OMP:KDA
PMID:3101583
interrupted endospore formation
2015-06-08T13:06:18Z
An altered endospore formation phenotype where development of the endospore is interrupted before the process is complete.
OMP:0008018
kanderson
microbial_phenotype
An altered endospore formation phenotype where development of the endospore is interrupted before the process is complete.
OMP:KDA
endospore formation stopped at stage II
2015-06-08T13:07:39Z
An interrupted endospore formation phenotype where sporulation is stopped after formation of the septum, but before engulfment of the forespore by the mother cell.
OMP:0008019
kanderson
microbial_phenotype
An interrupted endospore formation phenotype where sporulation is stopped after formation of the septum, but before engulfment of the forespore by the mother cell.
OMP:KDA
PMID:3101583
endospore formation stopped at stage III
2015-06-08T13:08:51Z
An interrupted endospore formation phenotype where sporulation is stopped after engulfment but before production of the endospore cortex and coat.
OMP:0008020
kanderson
microbial_phenotype
An interrupted endospore formation phenotype where sporulation is stopped after engulfment but before production of the endospore cortex and coat.
OMP:KDA
PMID:3101583
endospore formation stopped at stage IV
2015-06-08T13:09:45Z
An interrupted endospore formation phenotype where sporulation is stopped after deposition of the cortex and germ cell wall, but before formation of the endospore coat.
OMP:0008021
kanderson
microbial_phenotype
An interrupted endospore formation phenotype where sporulation is stopped after deposition of the cortex and germ cell wall, but before formation of the endospore coat.
OMP:KDA
PMID:3101583
endospore formation stopped at stage V
2015-06-08T13:10:24Z
An interrupted endospore formation phenotype where sporulation is stopped after formation of the coat, but before the endospore has developed its characteristic resistance properties.
OMP:0008022
kanderson
microbial_phenotype
An interrupted endospore formation phenotype where sporulation is stopped after formation of the coat, but before the endospore has developed its characteristic resistance properties.
OMP:KDA
PMID:3101583
endospore formation stopped at stage VI
2015-06-08T13:11:05Z
An interrupted endospore formation phenotype where endospore formation and maturation is complete, but before lysis of the mother cell.
OMP:0008023
kanderson
microbial_phenotype
An interrupted endospore formation phenotype where endospore formation and maturation is complete, but before lysis of the mother cell.
OMP:KDA
PMID:3101583
endospore cortex phenotype
2015-06-08T13:20:48Z
An endospore external encapsulating structure phenotype that relates to the endospore cortex, a layer surrounding an endospore that lies between the outer and inner endospore membranes and consists of peptidoglycan which is typically less cross-linked than that found in vegetable cell walls.
GO:0043595
OMP:0008024
kanderson
microbial_phenotype
An endospore external encapsulating structure phenotype that relates to the endospore cortex, a layer surrounding an endospore that lies between the outer and inner endospore membranes and consists of peptidoglycan which is typically less cross-linked than that found in vegetable cell walls.
GO:0043595
OMP:KDA
endospore cortex
GO:0043595
absence of an endospore cortex
2015-06-08T13:22:06Z
An endospore cortex phenotype where an endospore lacks a cortex.
OMP:0008025
kanderson
microbial_phenotype
An endospore cortex phenotype where an endospore lacks a cortex.
OMP:KDA
presence of a cortex
2015-06-08T13:22:06Z
An endospore cortex phenotype where an endospore has a cortex.
OMP:0008026
kanderson
microbial_phenotype
An endospore cortex phenotype where an endospore has a cortex.
OMP:KDA
altered endospore coat
2015-06-08T13:24:49Z
An endospore coat phenotype where the endospore coat is altered relative to a designated control.
OMP:0008027
kanderson
microbial_phenotype
An endospore coat phenotype where the endospore coat is altered relative to a designated control.
OMP:KDA
genetic transfer phenotype
2017-10-23T14:35:30Z
A genetic material phenotype relating to the ability of microbes to serve as a donor of recipient in the transfer of genetic material.
OMP:0008028
This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
Tianyizhou
microbial_phenotype
altered endospore cortex
2015-06-08T13:30:48Z
An endospore cortex phenotype where the endospore cortex is altered relative to a designated control.
OMP:0008029
kanderson
microbial_phenotype
An endospore cortex phenotype where the endospore cortex is altered relative to a designated control.
OMP:KDA
altered endospore germ cell wall
2015-06-08T13:31:51Z
An endospore germ cell wall phenotype where the germ cell wall is altered relative to a designated control.
OMP:0008030
kanderson
microbial_phenotype
An endospore germ cell wall phenotype where the germ cell wall is altered relative to a designated control.
OMP:KDA
altered exosporium
2015-06-08T13:32:47Z
An endospore exosporium phenotype where the exposporium is altered relative to a designated control.
OMP:0008031
kanderson
microbial_phenotype
An endospore exosporium phenotype where the exposporium is altered relative to a designated control.
OMP:KDA
altered outer membrane
2015-06-08T13:33:31Z
An outer endospore membrane phenotype where the outer membrane is altered relative to a designated control.
OMP:0008032
kanderson
microbial_phenotype
An outer endospore membrane phenotype where the outer membrane is altered relative to a designated control.
OMP:KDA
altered core
2015-06-08T13:34:26Z
An endospore core phenotype where the core is altered relative to a designated control.
OMP:0008033
kanderson
microbial_phenotype
An endospore core phenotype where the core is altered relative to a designated control.
OMP:KDA
altered inner endospore membrane
2015-06-08T13:35:10Z
An inner endospore membrane phenotype where the inner membrane is altered relative to a designated control.
OMP:0008034
kanderson
microbial_phenotype
An inner endospore membrane phenotype where the inner membrane is altered relative to a designated control.
OMP:KDA
natural competence phenotype
2017-10-23T14:46:29Z
A genetic transfer phenotype related to the ability of microbes to take up extracellular DNA from the environment under natural conditions.
OMP:0008035
Tianyizhou
microbial_phenotype
A genetic transfer phenotype related to the ability of microbes to take up extracellular DNA from the environment under natural conditions.
GO:
OMP:tz
absence of natural competence
2017-10-23T14:52:25Z
A natural competence phenotype where a microbe lacks the ability to be transformed by taking up extracellular DNA from the environment.
OMP:0008036
Tianyizhou
microbial_phenotype
A natural competence phenotype where a microbe lacks the ability to be transformed by taking up extracellular DNA from the environment.
OMP:tz
altered natural competence
2017-10-23T14:52:29Z
A natural competence phenotype where the rate, frequency, timing, or extent of natural competence is altered relative to a designated control.
OMP:0008037
Tianyizhou
microbial_phenotype
A natural competence phenotype where the rate, frequency, timing, or extent of natural competence is altered relative to a designated control.
OMP:TZ
presence of natural competence
2017-10-23T14:52:33Z
A natural competence phenotype where a microbe has the ability to be transformed by taking up extracellular DNA from the environment.
OMP:0008038
Tianyizhou
microbial_phenotype
A natural competence phenotype where a microbe has the ability to be transformed by taking up extracellular DNA from the environment.
OMP:tz
decreased natural competence
2017-10-23T15:15:23Z
An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is decreased relative to a designated control.
OMP:0008039
Tianyizhou
microbial_phenotype
An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is decreased relative to a designated control.
OMP:TZ
increased natural competence
2017-10-23T15:15:35Z
An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is increased relative to a designated control.
OMP:0008040
Tianyizhou
microbial_phenotype
An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is increased relative to a designated control.
OMP:TZ
abolished natural competence
2017-10-23T17:55:59Z
A decreased natural competence phenotype where the ability to be transformed by taking up extracellular DNA is abolished.
OMP:0008041
Tianyizhou
microbial_phenotype
A decreased natural competence phenotype where the ability to be transformed by taking up extracellular DNA is abolished.
OMP:TZ
plaque morphology phenotype
2017-12-12T17:17:11Z
A bacteriophage plaque morphology phenotype that describe the appearance, size of viral plaques.
OMP:0008043
Tianyizhou
microbial_phenotype
true
A bacteriophage plaque morphology phenotype that describe the appearance, size of viral plaques.
OMP:TZ
plaque size phenotype
2017-12-12T17:33:04Z
A bacteriophage plaque morphology phenotype that describe the size of viral plaques.
OMP:0008044
Tianyizhou
microbial_phenotype
true
A bacteriophage plaque morphology phenotype that describe the size of viral plaques.
OMP:TZ
altered plaque morphology phenotype
2017-12-12T17:36:55Z
A bacteriophage plaque morphology phenotype where the appearance, size of viral plaque is altered relative to a designated control.
OMP:0008045
Tianyizhou
microbial_phenotype
true
A bacteriophage plaque morphology phenotype where the appearance, size of viral plaque is altered relative to a designated control.
OMP:TZ
altered plaque size phenotype
2017-12-12T17:39:30Z
A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control.
OMP:0008046
Tianyizhou
microbial_phenotype
true
plaque appearance phenotype
2017-12-12T17:41:00Z
A bacteriophage plaque morphology phenotype that describe the appearance of viral plaques.
OMP:0008047
Tianyizhou
microbial_phenotype
true
altered plaque morphology phenotype
2017-12-12T17:59:53Z
A bacteriophage plaque morphology phenotype where the appearance and the size of the plaque is altered to a designated control.
OMP:0008048
Tianyizhou
microbial_phenotype
A bacteriophage plaque morphology phenotype where the appearance and the size of the plaque is altered to a designated control.
OMP:TZ
altered plaque size phenotype
2017-12-12T18:02:15Z
A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control.
OMP:0008049
Tianyizhou
microbial_phenotype
A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control.
OMP:TZ
plaque size phenotype
2017-12-12T18:35:39Z
A bacteriophage plaque morphology phenotype that describe the size of viral plaques.
OMP:0008050
Tianyizhou
microbial_phenotype
true
altered plaque appearance
2017-12-12T18:37:06Z
A bacteriophage plaque morphology phenotype where the appearance of viral plaque is altered relative to a designated control.
OMP:0008051
Tianyizhou
microbial_phenotype
more turbid plaque appearance
2017-12-12T18:38:28Z
An altered bacteriophage plaque morphology phenotype where the appearance of a viral plaque is more turbid than a designated control.
OMP:0008052
Tianyizhou
microbial_phenotype
An altered bacteriophage plaque morphology phenotype where the appearance of a viral plaque is more turbid than a designated control.
OMP:tz
clearer plaque appearance
2017-12-12T18:39:01Z
An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque is clearer relative to a designated control.
OMP:0008053
Tianyizhou
microbial_phenotype
increased plaque size phenotype
2017-12-12T18:40:37Z
A bacteriophage plaque morphology phenotype where the size of viral plaque is increased relative to a designated control.
OMP:0008054
Tianyizhou
microbial_phenotype
decreased plaque size phenotype
2017-12-12T18:41:48Z
A bacteriophage plaque morphology phenotype where the size of viral plaque is decreased relative to a designated control.
OMP:0008055
Tianyizhou
microbial_phenotype
plaque morphology phenotype
2018-02-16T16:16:46Z
A bacteriophage plaque morphology phenotype where the bacteria shows a certain size and appearance of the plaque.
OMP:0008057
Tianyizhou
microbial_phenotype
plaque appearance phenotype
2018-02-16T16:21:31Z
A bacteriophage plaque morphology phenotype where bacteria shows an appearance of the viral plaque.
OMP:0008058
Tianyizhou
microbial_phenotype
plaque size phenotype
2018-02-16T16:24:07Z
A bacteriophage plaque morphology phenotype where bacteria shows an size of the viral plaque.
OMP:0008059
Tianyizhou
microbial_phenotype
turbid plaque appearance
2018-02-16T16:26:00Z
A bacteriophage plaque morphology phenotype where the viral plaque has a turbid appearance.
OMP:0008060
Tianyizhou
microbial_phenotype
A bacteriophage plaque morphology phenotype where the viral plaque has a turbid appearance.
OMP:tz
clear plaque appearance
2018-02-16T16:26:05Z
A bacteriophage plaque morphology phenotype where the viral plaque appears to be clear.
OMP:0008061
Tianyizhou
microbial_phenotype
bull's eye plaque appearance morphology
2018-02-16T16:31:45Z
An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque has a high central density of surviving colonies and then a depletion region, followed by a high-colony-density region and then finally an apparently clear zone.
OMP:0008062
Tianyizhou
microbial_phenotype
true
altered to fuzzy edge plaque appearance
2018-02-16T16:32:23Z
An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque edge becomes fuzzy relative to a designated control.
OMP:0008063
Some mutant in phage T4 will cause the edge of the plaque become fuzzy.
Tianyizhou
microbial_phenotype
bull's eye plaque appearance
2018-02-16T17:34:00Z
A bacteriophage plaque morphology phenotype where the appearance of viral plaque has a high central density of surviving colonies and then a depletion region, followed by a high-colony-density region and then finally an apparently clear zone.
OMP:0008064
T7 will create bull's eye plaque on e.coli Hfr strain.
Tianyizhou
cocarde bacteriophage plaque phenotype
hazy bacteriophage plaque morphology
microbial_phenotype
altered to bull's eye plaque appearance
2018-02-16T17:48:35Z
An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque change from either clear or turbid to bull's eye.
OMP:0008065
Tianyizhou
cocarde plaque morphology
hazy plaque morphology
microbial_phenotype
quality
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
PATO:0000001
PATO:0000072
quality
trait
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
PATOC:GVG
mobility
A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.
PATO:0000004
Should be defined using translocation.
quality
A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.
PATOC:GVG
concentration of
A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
PATO:0000033
concentration
quality
A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
Wikipedia:http://en.wikipedia.org/wiki/concentration
frequency
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
PATO:0000044
quality
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
Wikipedia:http://en.wikipedia.org/wiki/frequency
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATO:0000051
quality
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATOC:GVG
shape
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATO:0000052
PATO:0001647
Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects.
quality
relational shape quality
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATOC:GVG
trophic quality
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
PATO:0000056
nutritional quality
quality
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Trophic_level
occurrence
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
PATO:0000057
PATO:0000156
PATO:0000158
incidence
quality
temporal
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
PATOC:GVG
spatial pattern
A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.
PATO:0000060
PATO:0000132
PATO:0001565
distribution
pattern
quality
A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.
PATOC:GVG
qualitative
PATO:0000068
TODO: define this or obsolete it and move children somewhere else.
quality
deviation(from_normal)
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
PATO:0000069
quality
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
PATOC:GVG
amount
PATO:0000053
PATO:0000070
PATO:0000071
PATO:0001169
PATO:0001226
The number of entities of this type that are part of the whole organism.
This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10.
count
count in organism
number
presence
presence or absence in organism
quality
quantitative
PATOC:GVG
The number of entities of this type that are part of the whole organism.
size
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
PATO:0000117
quality
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
WordNet:WordNet
length
A 1-D extent quality which is equal to the distance between two points.
PATO:0000122
quality
A 1-D extent quality which is equal to the distance between two points.
PATOC:GVG
orientation
A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.
PATO:0000133
PATO:0000137
amount of rotation
angle
angular magnitude
angular placement
plane angle
quality
A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.
PATOC:JE
position
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATO:0000140
PATO:0001032
PATO:0001631
location
placement
quality
relational spatial quality
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATOC:GVG
structure
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATO:0000141
PATO:0001452
conformation
quality
relational structural quality
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATOC:GVG
VT:1000738
conformation
temperature
A physical quality of the thermal energy of a system.
PATO:0000146
quality
A physical quality of the thermal energy of a system.
PATOC:GVG
texture
A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
PATO:0000150
quality
A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
PATOC:GVG
rate
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
PATO:0000161
quality
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
PATOC:melissa
viability
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
PATO:0000169
quality
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
PATOC:GVG
arrested
A quality of a process which ends earlier than the natural end time or reference process.
PATO:0000297
PATO:0001508
TODO: the definition is incorrect. See absent.
abolished
incomplete
quality
A quality of a process which ends earlier than the natural end time or reference process.
PATOC:LC
irregular spatial pattern
A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency.
PATO:0000330
quality
A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency.
PATOC:GVG
branched
A branchiness quality inhering in a bearer by virtue of the bearer's having branches.
PATO:0000402
quality
ramified
ramiform
A branchiness quality inhering in a bearer by virtue of the bearer's having branches.
WordNet:WordNet
curved
A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend.
PATO:0000406
bowing
curled
quality
A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend.
WordNet:WordNet
circular
A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.
PATO:0000411
quality
round
rounded
A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.
thefreedictionary.com:thefreedictionary.com
unbranched
A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches.
PATO:0000414
microbial_phenotype
A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches.
PATOC:GVG
auxotrophic
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
PATO:0000422
quality
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic
prototrophic
A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth.
PATO:0000423
microbial_phenotype
A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Prototrophic
regular spatial pattern
A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement.
PATO:0000440
microbial_phenotype
A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement.
PATOC:GVG
abnormal
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
PATO:0000460
aberrant
atypia
atypical
defective
quality
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
PATOC:GVG
normal
A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.
PATO:0000461
average
quality
A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.
PATOC:GVG
absent
A quality denoting the lack of an entity.
Example: [ E=wing Q=absent ] -applies to an organism that lacks wings. Note that this is the reciprocal quality to the relational quality "lacks all parts of type". This means that [E=wing Q=absent] is replaceable with [E=organism Q=lacks_all_parts_of_type E2=Wing]. The latter is preferable as it allows greater precision in stating what is lacking from where. E.g. We can say [E=spermatocyte Q=lacks_all_parts_of_type E2=aster] to describe spermatocytes that have no asters.
PATO:0000462
PATO:0001996
absence
absent from organism
quality
A quality denoting the lack of an entity.
thefreedictionary.:thefreedictionary.
present
A quality inhering in a bearer by virtue of the bearer's existence.
PATO:0000467
present in organism
quality
A quality inhering in a bearer by virtue of the bearer's existence.
PATOC:GVG
increased duration
A duration quality of a process which is relatively high.
PATO:0000498
PATO:0000715
chronic
high time
increased period
increased time
prolonged period
quality
slow time
A duration quality of a process which is relatively high.
PATOC:GVG
decreased duration
A duration quality of a process which is relatively low.
PATO:0000499
PATO:0000716
decreased period
decreased time
fast time
low period
quality
shortened period
A duration quality of a process which is relatively low.
PATOC:GVG
delayed
A quality of a process which starts later than the natural start time or the reference process.
PATO:0000502
late
quality
A quality of a process which starts later than the natural start time or the reference process.
PATOC:LC
increased length
A length quality which is relatively large.
PATO:0000573
long
quality
A length quality which is relatively large.
PATOC:GVG
decreased length
A length quality which is relatively small.
PATO:0000574
quality
short
shortened
stubby
A length quality which is relatively small.
PATOC:GVG
increased size
A size quality which is relatively high.
PATO:0000586
PATO:0001202
big
enlarged
expanded
great
large
quality
A size quality which is relatively high.
PATOC:GVG
decreased size
A size quality which is relatively low.
PATO:0000587
hypoplasia
quality
reduced
small
tiny
underdeveloped
A size quality which is relatively low.
PATOC:GVG
increased thickness
A thickness which is relatively high.
PATO:0000591
high thickness
quality
stout
thick
thickened
A thickness which is relatively high.
PATOC:GVG
decreased thickness
A thickness which is relatively low.
PATO:0000592
low thickness
quality
slender
thin
A thickness which is relatively low.
PATOC:GVG
increased volume
A volume which is relatively high.
PATO:0000595
high volume
large volume
quality
A volume which is relatively high.
PATOC:GVG
decreased volume
A volume which is relatively low.
PATO:0000596
low volume
quality
small volume
A volume which is relatively low.
PATOC:GVG
bent
A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.
PATO:0000617
quality
A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.
PATOC:MAH
mislocalised
A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.
PATO:0000621
PATO:0000628
ectopic
mislocalized
quality
A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.
PATOC:GVG
fused with
A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity.
PATO:0000642
coalesced
fused
fused to
joined with
merged with
quality
A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity.
PATOC:GVG
unfused from
A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity.
PATO:0000651
microbial_phenotype
unfused
A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity.
PATOC:nw
continuous
A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent.
PATO:0000429
PATO:0000689
quality
uninterrupted
A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent.
thefreedictionary.com:thefreedictionary.com
discontinuous
A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions.
PATO:0000426
PATO:0000690
intermittent
interrupted
quality
A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions.
thefreedictionary.com:thefreedictionary.com
premature
A quality of a process which starts earlier than the natural start time or the reference process.
PATO:0000691
PATO:0000694
PATO:0002086
advanced
early
precocious
quality
A quality of a process which starts earlier than the natural start time or the reference process.
PATO:LC
rough
A texture quality inhering in a bearer by virtue of the bearer's irregular surface.
PATO:0000700
PATO:0001616
coarse
quality
A texture quality inhering in a bearer by virtue of the bearer's irregular surface.
PATOC:GVG
smooth
A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities.
PATO:0000701
microbial_phenotype
A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities.
PATOC:GVG
lethal (sensu genetics)
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
PATO:0000718
quality
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
PATOC:GVG
viable
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
PATO:0000719
quality
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
PATOC:GVG
decreased rate
A rate which is relatively low.
PATO:0000911
quality
slow rate
A rate which is relatively low.
PATO:GVG
increased rate
A rate which is relatively high.
PATO:0000912
fast rate
high rate
quality
A rate which is relatively high.
PATO:GVG
thickness
A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
PATO:0000915
quality
A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
WordNet:WordNet
volume
A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
PATO:0000918
quality
A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
PATOC:GVG
sharpness
A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point.
PATO:0000944
apiculate
quality
A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point.
PATOC:GVG
elliptic
A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section.
PATO:0000947
ellipse-shaped
ellipsoid
elliptical
oval
ovoid
quality
A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section.
PATOC:GVG
permeability
A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).
PATO:0000970
quality
A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).
Biology-online:Biology-online
permeable
A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion).
PATO:0000982
porous
quality
A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion).
Biology-online:Biology-online
impermeable
A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion).
PATO:0000983
microbial_phenotype
A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion).
Biology-online:Biology-online
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATO:0001018
PATO:0002079
Wikipedia:Physical_property
quality
relational physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATOC:GVG
concentrated
A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration.
PATO:0001159
quality
A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration.
PATOC:GVG
increased concentration
A concentration which is higher relative to the normal or average.
PATO:0001162
high concentration
quality
A concentration which is higher relative to the normal or average.
PATOC:GVG
decreased concentration
A concentration which is lower relative to the normal or average.
PATO:0001163
low concentration
quality
A concentration which is lower relative to the normal or average.
PATOC:GVG
process quality
A quality which inheres in an process.
PATO:0001236
PATO:0001239
PATO:0001240
See comments of relational quality of a physical entity.
quality
quality of a process
quality of occurrent
quality of process
relational quality of occurrent
A quality which inheres in an process.
PATOC:GVG
physical object quality
A quality which inheres in a continuant.
PATO:0001237
PATO:0001238
PATO:0001241
Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.
monadic quality of a continuant
monadic quality of an object
monadic quality of continuant
multiply inhering quality of a physical entity
quality
quality of a continuant
quality of a single physical entity
quality of an object
quality of continuant
snap:Quality
A quality which inheres in a continuant.
PATOC:GVG
increased temperature
A temperature which is relatively high.
PATO:0000678
PATO:0001305
high temperature
hot
quality
A temperature which is relatively high.
PATOC:GVG
decreased temperature
A temperature which is relatively low.
PATO:0000677
PATO:0001306
cold
low temperature
quality
A temperature which is relatively low.
PATOC:GVG
duration
A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.
PATO:0000081
PATO:0001309
period
quality
time
A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.
PATOC:mellybelly
convex
A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.
PATO:0001355
microbial_phenotype
A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.
PATOC:GVG
lobate
A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes.
PATO:0001367
quality
A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes.
PATOC:GVG
cellular quality
A monadic quality of continuant that exists at the cellular level of organisation.
PATO:0001396
quality
A monadic quality of continuant that exists at the cellular level of organisation.
PATOC:GVG
nucleate quality
A cellular quality inhering in a bearer by virtue of bearer's number of nuclei.
PATO:0001404
quality
A cellular quality inhering in a bearer by virtue of bearer's number of nuclei.
PATOC:GVG
binucleate
A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei.
PATO:0001406
quality
A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei.
Biology-online:Biology-online
mononucleate
A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus.
PATO:0001407
quality
A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus.
Biology-online:Biology-online
sharp
A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge.
PATO:0001419
quality
A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge.
PATOC:GVG
attachment quality
A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.
PATO:0001435
quality
A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.
PATOC:GVG
wholeness
A structural quality inhering in a bearer by virtue of whether the bearer includes all its components.
PATO:0001442
quality
A structural quality inhering in a bearer by virtue of whether the bearer includes all its components.
thefreedictionary.com:thefreedictionary.com
broken
A broken quality inhering in a bearer by virtue of the bearer's being broken open.
PATO:0001443
PATO:0001444
PATO:0001820
burst
cracked
fractured
fragmented
hemorrhaged
quality
ruptured
split
torn
A broken quality inhering in a bearer by virtue of the bearer's being broken open.
PATOC:GVG
detached from
An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity.
PATO:0001453
detached
quality
An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity.
PATOC:GVG
sensitivity of a process
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
PATO:0001457
quality
sensitivity of occurrent
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
PATOC:GVG
spherical
A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).
PATO:0000408
PATO:0001499
globular
quality
rotund
A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).
WordNet:WordNet
delaminated
A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer.
PATO:0001514
quality
A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer.
PATOC:cjm
increased sensitivity of a process
A sensitivity of a process which is higher than normal or average.
PATO:0001551
high sensitivity of occurrent
increased sensitivity of occurrent
quality
A sensitivity of a process which is higher than normal or average.
PATO:GVG
decreased sensitivity of a process
A sensitivity of a process which is lower than normal or average.
PATO:0001552
decreased sensitivity of occurrent
low sensitivity of occurrent
quality
A sensitivity of a process which is lower than normal or average.
PATO:GVG
has number of
OBO_REL:has_part
PATO:0001555
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
cardinality
extra or missing physical or functional parts
has or lacks parts of type
mereological quality
number
number of
quality
PATOC:CJM
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
lacking processual parts
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
PATO:0001558
quality
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
PATOC:GVG
having extra processual parts
A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts.
PATO:0001561
having supernumerary processual parts
quality
A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts.
PATOC:GVG
extra or missing processual parts
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
PATO:0001564
quality
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
PATOC:GVG
increased permeability
A permeability which is relatively high.
PATO:0001577
high permeability
quality
A permeability which is relatively high.
PATO:GVG
decreased permeability
A permeability which is relatively low.
PATO:0001578
low permeability
microbial_phenotype
A permeability which is relatively low.
PATO:GVG
curvature
A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.
PATO:0001591
quality
A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.
WordNet:WordNet
protruding
A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary.
PATO:0001598
PATO:0001644
protruding
quality
relational protruding quality
A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary.
WordNet:WordNet
aggregated
A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.
PATO:0001629
clumped
clustered
quality
A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.
WordNet:WordNet
dispersed
A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent.
PATO:0001630
quality
A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent.
WordNet:WordNet
stubby
A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build.
PATO:0001643
quality
A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build.
thefreedictionary.com:thefreedictionary.com
1-D extent
1-D size
A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
PATO:0001708
quality
A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
PATOC:GVG
3-D extent
3D size
A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
PATO:0001710
quality
A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
PATOC:GVG
split
A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.
PATO:0001786
clefted
divided
forked
quality
septate
A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.
die.net:die.net
kinked
A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length.
PATO:0001798
quality
tightly curled
twisted
A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length.
thefreedictionary.com:thefreedictionary.com
imperforate
A structural quality inhering in a bearer by virtue of the bearer's having no opening.
PATO:0001821
microbial_phenotype
A structural quality inhering in a bearer by virtue of the bearer's having no opening.
thefreedictionary.com:thefreedictionary.com
tangled
A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel.
PATO:0001846
quality
A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel.
answers.com:answers.com
constricted
A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically.
PATO:0001837
PATO:0001847
quality
stenosis
stenotic
stricture
A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically.
WordNet:WordNet
concave
A shape quality in a bearer by virtue of the bearer's curving inward.
PATO:0001857
quality
A shape quality in a bearer by virtue of the bearer's curving inward.
WordNet:WordNet
spheroid
A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids.
PATO:0001864
PATO:0001865
quality
sphericality
A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids.
Wikipedia:http://en.wikipedia.org/wiki/Spheroid
sigmoid
A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped.
PATO:0001878
S-shaped
quality
sigmoidal
A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped.
PATOC:CJM
has normal numbers of parts of type
PATO:0001905
The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
having physical part
quality
PATOC:CJM
The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
multinucleate
A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus.
PATO:0001908
quality
A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus.
PATOC:GVG
surface feature shape
A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell.
PATO:0001925
This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved.
quality
A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell.
PATOC:CJM
organismal quality
A quality that inheres in an entire organism or part of an organism.
PATO:0001995
quality
A quality that inheres in an entire organism or part of an organism.
PATOC:CJM
lacks parts or has fewer parts of type
PATO:0001999
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
loss of
quality
PATOC:CJM
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
lacks all parts of type
A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity.
Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2.
OBO_REL:lacks_part
PATO:0001557
PATO:0002000
lacks all physical parts of type
quality
A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity.
PATOC:CJM
has fewer parts of type
Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type.
PATO:0001569
PATO:0002001
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
decreased number of
has decreased number of
has fewer physical parts of type
quality
PATOC:CJM
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
has extra parts of type
In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q=<this> E2=finger.
PATO:0001560
PATO:0002002
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
has extra parts of
has increased number of
having extra physical parts
having supernumerary physical parts
increased number of
quality
PATOC:CJM
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
concavity
PATO:0002005
Surface shape that refers to the inward or outward curvature of the surface.
quality
PATOC:MAH
Surface shape that refers to the inward or outward curvature of the surface.
2-D shape
2-D projection
A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.
PATO:0002006
cross-sectional
quality
A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.
PATOC:CJM
convex 3-D shape
A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.
Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png
PATO:0002007
Use this term or an is_a child of this term when the entire shape of the object is known.
quality
A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.
PATOC:CJM
concave 3-D shape
A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave.
Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png
PATO:0002008
quality
A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave.
PATOC:CJM
branchiness
A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity.
PATO:0002009
quality
A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity.
PATOC:MAH
structure, cavities
A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.
PATO:0002014
quality
A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.
PATOC:GVG
increased occurrence
2009-03-26T11:10:11Z
An occurrence which is relatively high.
George Gkoutos
PATO:0002051
increased incidence
quality
An occurrence which is relatively high.
PATOC:GVG
decreased occurrence
2009-03-26T11:12:35Z
An occurrence which is relatively low.
George Gkoutos
PATO:0002052
decreased incidence
quality
An occurrence which is relatively low.
PATOC:GVG
physical quality of a process
2009-06-05T09:16:46Z
PATO:0002062
george
quality
altered number of
2009-09-21T10:41:58Z
George Gkoutos
Having extra or fewer parts.
PATO:0002083
quality
Having extra or fewer parts.
PATOC:GVG
perforate
2009-10-05T03:37:05Z
A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes.
PATO:0000649
PATO:0002112
george
permeable
pierced
quality
A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes.
answers.com:answers.com
displaced
2010-03-01T02:56:33Z
A positional quality inhering in a bearer by virtue the bearer's being changed in position.
George Gkoutos
PATO:0002181
quality
A positional quality inhering in a bearer by virtue the bearer's being changed in position.
PATOC:GVG
molecular quality
2010-03-10T03:18:15Z
A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
George Gkoutos
PATO:0002061
PATO:0002182
quality
relational molecular quality
A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
PATOC:GVG
obclavate
2010-07-08T01:47:09Z
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate.
PATO:0002213
george
quality
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate.
PATOC:GVG
teardrop-shaped
2010-07-23T02:31:11Z
A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop.
PATO:0002240
drop shaped
george
quality
A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop.
url:wordnetweb.princeton.edu/perl/webwn
pointed
2010-09-08T03:15:16Z
A shape quality inhering in a bearer by virtue of the bearer's having a point.
PATO:0002258
george
quality
A shape quality inhering in a bearer by virtue of the bearer's having a point.
PATOC:http://www.merriam-webster.com/dictionary/pointed
3-D shape
2010-10-05T12:31:16Z
A shape that inheres in a 3 dimensional entity.
PATO:0002266
george
quality
A shape that inheres in a 3 dimensional entity.
PATOC:OREGON
increased quality
2011-06-16T06:39:43Z
A quality that has a value that is increased compared to normal or average.
George Gkoutos
PATO:0002300
quality
A quality that has a value that is increased compared to normal or average.
PATOC:GVG
decreased quality
2011-06-16T06:40:15Z
A quality that has a value that is decreased compared to normal or average.
George Gkoutos
PATO:0002301
quality
A quality that has a value that is decreased compared to normal or average.
PATOC:GVG
decreased process quality
2011-06-16T06:50:59Z
A quality of a process that has a value that is decreased compared to normal or average.
George Gkoutos
PATO:0002302
quality
A quality of a process that has a value that is decreased compared to normal or average.
PATOC:GVG
decreased object quality
2011-06-16T06:51:54Z
A quality of an object that has a value that is decreased compared to normal or average.
George Gkoutos
PATO:0002303
quality
A quality of an object that has a value that is decreased compared to normal or average.
PATOC:GVG
increased process quality
2011-06-16T06:53:08Z
A quality of a process that has a value that is increased compared to normal or average.
George Gkoutos
PATO:0002304
quality
A quality of a process that has a value that is increased compared to normal or average.
PATOC:GVG
increased object quality
2011-06-16T06:54:01Z
A quality of an object that has a value that is increased compared to normal or average.
George Gkoutos
PATO:0002305
quality
A quality of an object that has a value that is increased compared to normal or average.
PATOC:GVG
superelliptic
2011-10-12T12:45:16Z
A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt
George Gkoutos
Lamé curve
PATO:0002318
quality
A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt
wiktionary:superellipse
temporal distribution quality
2011-11-22T01:12:28Z
A temporal distribution pattern of process occurrences within a regulation/reference process.
George Gkoutos
PATO:0002323
quality
A temporal distribution pattern of process occurrences within a regulation/reference process.
PATOC:LC
offset quality
2011-11-23T11:46:00Z
George Gkoutos
PATO:0002324
The temporal relation between the end of the process with respect to a reference process.
completeness
extent
quality
GOC:CJM
completeness
PATOC:LC
The temporal relation between the end of the process with respect to a reference process.
GOC:CJM
extent
onset quality
2011-11-23T11:47:34Z
George Gkoutos
PATO:0002325
The temporal relation between the start of the process with respect to a reference process.
initiation
quality
PATOC:LC
The temporal relation between the start of the process with respect to a reference process.
lemon-shaped
2012-01-31T03:55:16Z
A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc
PATO:0002345
gkoutos
quality
A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc
PATOC:MH
snowman-shaped
2012-01-31T03:58:10Z
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes.
PATO:0002346
gkoutos
quality
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes.
PATOC:MH
nucleated
2013-10-21T05:44:34Z
A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus.
PATO:0002505
gkoutos
quality
A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus.
PATOC:GVG
complete structure
2014-09-25T15:11:47Z
A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts.
PATO:0005012
microbial_phenotype
wasila.dahdul
A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts.
PATOC:WD
incomplete structure
2014-09-25T15:12:35Z
A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities.
PATO:0005013
quality
wasila.dahdul
A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities.
PATOC:WD
C-shaped
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C.
PATO:0015019
quality
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C.
github:mah11
https://github.com/pato-ontology/pato/issues/96
J-shaped
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J.
PATO:0015020
quality
A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J.
github:mah11
https://github.com/pato-ontology/pato/issues/96