1.2 13:04:2021 14:52 OBO-Edit 2.3.1 microbial_phenotype select is_a closure siegele definition expand assertion to term replaced by never_in_taxon Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: ?X and (RO_0002162 some ?Y) Class: ?X DisjointWith: RO_0002162 some ?Y RO:0002161 external never_in_taxon never_in_taxon true true is opposite_of RO:0002604 is_opposite_of is_opposite_of quality true true BRAND NAME Involved_in FORMULA INN IUPAC NAME InChI InChIKey SMILES SO feature annotation Abnormal/normal slim Absent/present slim Attribute slim cell_quality Disposition slim Grouping classes that can be excluded Aspergillus GO slim Candida GO slim Generic GO slim GOA and proteome slim Metagenomics GO slim PIR GO slim Plant GO slim Fission yeast GO slim Viral GO slim Yeast GO slim Prokaryotic GO subset Human phenotype slim Catalytic activity terms in need of attention Pathology slim Term not to be used for direct annotation Term not to be used for direct manual annotation Relational slim: types of quality that require an additional entity in order to exist Scalar slim Systematic synonym Value slim Viral overhaul terms subset_property synonym_type_property consider has_alternative_id has_broad_synonym database_cross_reference has_exact_synonym has_narrow_synonym has_obo_format_version has_obo_namespace has_related_synonym has_scope in_subset shorthand part_of BFO:0000050 Example: amino_acid part_of polypeptide. Used in FYPO to identify phenotypes that are always observed in the context of another, usually larger-scale, phenotype. X part_of Y if X is a subregion of Y. part_of part_of sequence X part_of Y if X is a subregion of Y. http://precedings.nature.com/documents/3495/version/1 has_part BFO:0000051 Example: operon has_part gene. Inverse of part_of. Used in FYPO to link phenotypes that are collections of features to phenotypes representing the features. has_part has_part sequence Inverse of part_of. http://precedings.nature.com/documents/3495/version/1 preceded_by BFO:0000062 Used in FYPO when a phenotype is observed after another event, usually a GO biological process, has ended, and where there isn't a suitable process to use with a during relation. microbial_phenotype preceded_by preceded_by precedes BFO:0000063 Used in FYPO when a phenotype is observed before another event, usually a GO biological process, begins, and where there isn't a suitable process to use with a during relation. microbial_phenotype precedes precedes occurs in BFO:0000066 Used in FYPO to identify a location, usually a cellular component or cell type, within which a phenotype is observed or relevant. microbial_phenotype occurs_in occurs_in during GOREL:0000002 Identifies a process, cell cycle stage or life stage during which a phenotype is observed or relevant. during during microbial_phenotype exists_during GOREL:0000032 Identifies a process, cell cycle stage or life stage during which a phenotype that affects a continuant, such as a cellular component or the level of a substance, is observed or relevant. exists_during exists_during microbial_phenotype occurs_at GOREL:0000501 This relation is not constrained with respect to whether the place where an event occurs completely surrounds, or is adjacent to, the location indicated. Example: chromatin silencing at centromere unfolds_around centromere : Repression of transcription of centromeric DNA by the formation of heterochromatin. Used in FYPO to identify a position where a phenotype is observed or relevant, usually a DNA or RNA sequence feature specified by a SO ID. microbial_phenotype occurs_at occurs_at inheres_in RO:0000052 Used in FYPO as described in PATO best practices; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps). inheres_in inheres_in microbial_phenotype participates_in RO:0000056 external participates_in participates_in has role RO:0000087 chebi_ontology has_role has_role located in RO:0001025 Used in FYPO to indicate where a physical quality phenotype is observed. located_in located_in microbial_phenotype happens_during GOREL:0000001 Identifies a process, cell cycle stage or life stage during which a phenotype that affects an occurrent, i.e. a biological process or molecular function, is observed or relevant. RO:0002092 external happens_during happens_during ends_during RO:0002093 ends_during ends_during external regulates RO:0002211 external regulates regulates negatively regulates RO:0002212 external negatively_regulates negatively_regulates positively regulates RO:0002213 external positively_regulates positively_regulates has_output Def comes from gorel file. Used in FYPO where one phenotype (p) always results in an additional phenotype (c) as a consequence. There may be other ways to get phenotype (c). RO:0002234 has_output has_output microbial_phenotype p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. GOC:curators p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. inheres in part of RO:0002314 Used in FYPO as described in MP/HP logical definition best practices for processes, and in an analogous manner for cell/cell part structure; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps). inheres_in_part_of inheres_in_part_of microbial_phenotype output_of Inverse of has_output. Relation between a structure and a process that forms it, or between one process and a preceding process; A output_of B used where B has_output A isn't always true. Implies that process B is the only way to get output. Used in FYPO where one phenotype (c) always results when another phenotype (p) is present. Phenotype (p) may have other consequences in addition to phenotype (c). RO:0002353 formation results from microbial_phenotype output_of output_of PomBase:mah formation results from towards RO:0002503 Relation binding a relational quality or disposition to the relevant type of entity. Relation binding a relational quality or disposition to the relevant type of entity. Used in FYPO as described in PATO best practices; identifies abolished GO processes; identifies substances affected by phenotypes. quality towards towards adjacent_to A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap. adjacent_to sequence A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap. PMID:20226267 SO:ke contains 2010-10-14T01:32:15Z Example: pre_miRNA contains miRNA_loop. The inverse of contained_by. contains kareneilbeck sequence PMID:20226267 The inverse of contained_by. correlates_with correlates_with quality decreased_in_magnitude_relative_to This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. decreased_in_magnitude_relative_to q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality PATOC:CJM q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. decreased_relative_to 2014-02-13T01:39:46Z Marcus P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P. decreased_relative_to microbial_phenotype true ECO:MCC P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P. derives_from derives_from sequence different_in_magnitude_relative_to different_in_magnitude_relative_to q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality PATOC:CJM q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. directly_associated_with 2009-08-26T02:50:08Z Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. Association is weaker than correlation or proportionality. These relations may be later added to PATO. cjm directly_associated_with q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. quality PATOC:cjm Wikipedia:Association_(statistics) q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. has_cross_section Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. has_cross_section quality s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. PATOC:CJM s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. has_dividend_entity has_dividend_entity quality has_dividend_quality has_dividend_quality quality has_divisor_entity has_divisor_entity quality has_divisor_quality has_divisor_quality quality has functional parent chebi_ontology has_functional_parent has_origin has_origin sequence has parent hydride chebi_ontology has_parent_hydride has_quality The relationship between a feature and an attribute. has_quality sequence has_ratio_quality has_ratio_quality quality increased_in_magnitude_relative_to This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. increased_in_magnitude_relative_to q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality PATOC:CJM q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. increased_relative_to 2014-02-13T01:41:08Z Marcus P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P. increased_relative_to microbial_phenotype true ECO:MCC P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P. inversely_associated_with 2009-08-26T02:50:24Z Association is weaker than correlation or proportionality. These relations may be later added to PATO. cjm inversely_associated_with q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. quality PATOC:cjm Wikipedia:Association_(statistics) q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. is conjugate acid of chebi_ontology is_conjugate_acid_of true is conjugate base of chebi_ontology is_conjugate_base_of true is enantiomer of chebi_ontology is_enantiomer_of true is_magnitude_of is_magnitude_of pato.ontology is_measurement_of is_measurement_of pato.ontology is substituent group from chebi_ontology is_substituent_group_from is tautomer of chebi_ontology is_tautomer_of true is_unit_of is_unit_of pato.ontology member_of A subtype of part_of. Inverse is collection_of. Winston, M, Chaffin, R, Herrmann: A taxonomy of part-whole relations. Cognitive Science 1987, 11:417-444. member_of sequence non_functional_homolog_of A relationship between a pseudogenic feature and its functional ancestor. non_functional_homolog_of sequence A relationship between a pseudogenic feature and its functional ancestor. SO:ke overlaps 2010-10-14T01:33:15Z Example: coding_exon overlaps CDS. X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y. kareneilbeck overlaps sequence PMID:20226267 X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y. qualifier Used in FYPO as described in PATO best practices; placeholder relation to indicate normality/abnormality. microbial_phenotype qualifier realized_by quality realized_by reciprocal_of There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. quality reciprocal_of PATOC:CJM q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. similar_in_magnitude_relative_to q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality similar_in_magnitude_relative_to PATOC:CJM q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. singly_occurring_form_of PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. monadic_form_of quality singly_occurring_form_of transcribed_from 2009-08-19T12:05:39Z Example: primary_transcript transcribed_from gene. X is transcribed_from Y if X is synthesized from template Y. kareneilbeck sequence transcribed_from X is transcribed_from Y if X is synthesized from template Y. http://precedings.nature.com/documents/3495/version/1 transcribed_to 2009-08-19T12:08:24Z Example: gene transcribed_to primary_transcript. Inverse of transcribed_from. kareneilbeck sequence transcribed_to Inverse of transcribed_from. http://precedings.nature.com/documents/3495/version/1 variant_of A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A. Added to SO during the immunology workshop, June 2007. This relationship was approved by Barry Smith. sequence variant_of A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A. SO:immuno_workshop chemical entity A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. CHEBI:24431 chebi_ontology A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. CHEBI:Team biological role A role played by the molecular entity or part thereof within a biological context. CHEBI:24432 chebi_ontology A role played by the molecular entity or part thereof within a biological context. CHEBI:Team pesticide CHEBI:25944 Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests. Wikipedia:Pesticide chebi_ontology CHEBI:Team Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests. application CHEBI:33232 Intended use of the molecular entity or part thereof by humans. chebi_ontology CHEBI:Team Intended use of the molecular entity or part thereof by humans. antimicrobial agent A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans. CHEBI:33281 antimicrobial chebi_ontology microbiocides A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans. CHEBI:Team role A role is a particular behaviour which a material entity may exhibit. CHEBI:50906 chebi_ontology A role is a particular behaviour which a material entity may exhibit. CHEBI:Team reproduction GO:0000003 GO:0019952 GO:0050876 The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms. Wikipedia:Reproduction biological_process reproductive physiological process GOC:go_curators GOC:isa_complete GOC:jl ISBN:0198506732 The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms. cilium or flagellum-dependent cell motility Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella. GO:0001539 Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC. biological_process ciliary or bacterial-type flagellar motility ciliary/flagellar motility Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella. GOC:cilia GOC:hjd GOC:krc cellular_component GO:0005575 GO:0008372 NIF_Subcellular:sao1337158144 Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. cellular component cellular_component subcellular entity NIF_Subcellular:nlx_subcell_100315 subcellular entity GOC:go_curators NIF_Subcellular:sao-1337158144 The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. cell GO:0005623 NIF_Subcellular:sao1813327414 The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. Wikipedia:Cell_(biology) cellular_component GOC:go_curators The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. GO:0006139 GO:0055134 biological_process cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism nucleobase, nucleoside and nucleotide metabolic process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process nucleobase, nucleoside, nucleotide and nucleic acid metabolism Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. GOC:ai GOC:dph GOC:tb nucleobase, nucleoside, nucleotide and nucleic acid metabolic process DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. DNA metabolism GO:0006259 GO:0055132 biological_process cellular DNA metabolism Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. ISBN:0198506732 DNA replication GO:0006260 GO:0055133 Reactome:REACT_100559 Reactome:REACT_101280 Reactome:REACT_101497 Reactome:REACT_102679 Reactome:REACT_103614 Reactome:REACT_104547 Reactome:REACT_105292 Reactome:REACT_105467 Reactome:REACT_105835 Reactome:REACT_106018 Reactome:REACT_106104 Reactome:REACT_106382 Reactome:REACT_106434 Reactome:REACT_106732 Reactome:REACT_107075 Reactome:REACT_107423 Reactome:REACT_108461 Reactome:REACT_108634 Reactome:REACT_108739 Reactome:REACT_108768 Reactome:REACT_108929 Reactome:REACT_109137 Reactome:REACT_112472 Reactome:REACT_113703 Reactome:REACT_29423 Reactome:REACT_29444 Reactome:REACT_29691 Reactome:REACT_29764 Reactome:REACT_30149 Reactome:REACT_31024 Reactome:REACT_31919 Reactome:REACT_32546 Reactome:REACT_32932 Reactome:REACT_33572 Reactome:REACT_33874 Reactome:REACT_50018 Reactome:REACT_53588 Reactome:REACT_6729 Reactome:REACT_6738 Reactome:REACT_6750 Reactome:REACT_6769 Reactome:REACT_6798 Reactome:REACT_6869 Reactome:REACT_6936 Reactome:REACT_6939 Reactome:REACT_77532 Reactome:REACT_79188 Reactome:REACT_79450 Reactome:REACT_80432 Reactome:REACT_80571 Reactome:REACT_80896 Reactome:REACT_80988 Reactome:REACT_81803 Reactome:REACT_83095 Reactome:REACT_84829 Reactome:REACT_85561 Reactome:REACT_86410 Reactome:REACT_86739 Reactome:REACT_87233 Reactome:REACT_87449 Reactome:REACT_87590 Reactome:REACT_88085 Reactome:REACT_88384 Reactome:REACT_88529 Reactome:REACT_89355 Reactome:REACT_89439 Reactome:REACT_89725 Reactome:REACT_90512 Reactome:REACT_90809 Reactome:REACT_90838 Reactome:REACT_91184 Reactome:REACT_91302 Reactome:REACT_92527 Reactome:REACT_92644 Reactome:REACT_92706 Reactome:REACT_94983 Reactome:REACT_95253 Reactome:REACT_95329 Reactome:REACT_96115 Reactome:REACT_96804 Reactome:REACT_96998 Reactome:REACT_97204 Reactome:REACT_97726 Reactome:REACT_99948 See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'. The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. Wikipedia:DNA_replication biological_process Loading of claspin onto DNA during replication origin firing, Xenopus tropicalis Reactome:REACT_99948 Binding of ATR-ATRIP to the RPA-ssDNA complex, Canis familiaris Reactome:REACT_87233 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Rattus norvegicus Reactome:REACT_50018 Recruitment of Rad17-RFC complex to DNA, Danio rerio Reactome:REACT_83095 Recruitment and activation of Chk1, Homo sapiens Reactome:REACT_6869 Loading of claspin onto DNA during replication origin firing, Homo sapiens Reactome:REACT_6738 Recruitment and activation of Chk1, Danio rerio Reactome:REACT_91184 Recruitment of Rad17-RFC complex to DNA, Gallus gallus Reactome:REACT_106018 Binding of ATR-ATRIP to the RPA-ssDNA complex, Rattus norvegicus Reactome:REACT_85561 Activation of claspin, Gallus gallus Reactome:REACT_88529 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Taeniopygia guttata Reactome:REACT_29764 Binding of ATR-ATRIP to the RPA-ssDNA complex, Danio rerio Reactome:REACT_84829 Activation of ATR in response to replication stress, Caenorhabditis elegans Reactome:REACT_97726 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Mus musculus Reactome:REACT_92527 Recruitment of Rad17-RFC complex to DNA, Canis familiaris Reactome:REACT_81803 Binding of ATR-ATRIP to the RPA-ssDNA complex, Gallus gallus Reactome:REACT_88085 Activation of ATR in response to replication stress, Drosophila melanogaster Reactome:REACT_108929 Activation of claspin, Xenopus tropicalis Reactome:REACT_101280 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Gallus gallus Reactome:REACT_113703 Stalling of DNA replication fork and RPA binding, Bos taurus Reactome:REACT_90512 Recruitment and activation of Chk1, Bos taurus Reactome:REACT_108461 Stalling of DNA replication fork and RPA binding, Xenopus tropicalis Reactome:REACT_94983 Activation of ATR in response to replication stress, Bos taurus Reactome:REACT_108768 Loading of claspin onto DNA during replication origin firing, Mus musculus Reactome:REACT_108634 Binding of ATR-ATRIP to the RPA-ssDNA complex, Taeniopygia guttata Reactome:REACT_29444 Activation of ATR in response to replication stress, Homo sapiens Reactome:REACT_6769 Activation of ATR in response to replication stress, Taeniopygia guttata Reactome:REACT_95253 Stalling of DNA replication fork and RPA binding, Gallus gallus Reactome:REACT_105835 Recruitment of Rad17-RFC complex to DNA, Rattus norvegicus Reactome:REACT_87449 Activation of claspin, Mus musculus Reactome:REACT_80571 Binding of ATR-ATRIP to the RPA-ssDNA complex, Xenopus tropicalis Reactome:REACT_108739 Stalling of DNA replication fork and RPA binding, Taeniopygia guttata Reactome:REACT_103614 Loading of claspin onto DNA during replication origin firing, Taeniopygia guttata Reactome:REACT_80432 Activation of ATR in response to replication stress, Xenopus tropicalis Reactome:REACT_105292 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Dictyostelium discoideum Reactome:REACT_33572 Recruitment of Rad17-RFC complex to DNA, Xenopus tropicalis Reactome:REACT_31024 Stalling of DNA replication fork and RPA binding, Homo sapiens Reactome:REACT_6936 Activation of ATR in response to replication stress, Schizosaccharomyces pombe Reactome:REACT_29423 Loading of claspin onto DNA during replication origin firing, Gallus gallus Reactome:REACT_97204 Recruitment and activation of Chk1, Rattus norvegicus Reactome:REACT_86739 Stalling of DNA replication fork and RPA binding, Canis familiaris Reactome:REACT_77532 Activation of claspin, Bos taurus Reactome:REACT_101497 Loading of claspin onto DNA during replication origin firing, Rattus norvegicus Reactome:REACT_31919 Recruitment and activation of Chk1, Taeniopygia guttata Reactome:REACT_32932 Recruitment of Rad17-RFC complex to DNA, Homo sapiens Reactome:REACT_6798 Activation of ATR in response to replication stress, Danio rerio Reactome:REACT_107075 Activation of ATR in response to replication stress, Rattus norvegicus Reactome:REACT_29691 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Schizosaccharomyces pombe Reactome:REACT_88384 Activation of claspin, Canis familiaris Reactome:REACT_106434 Recruitment of Rad17-RFC complex to DNA, Bos taurus Reactome:REACT_87590 Activation of claspin, Danio rerio Reactome:REACT_89355 Recruitment and activation of Chk1, Sus scrofa Reactome:REACT_80896 Binding of ATR-ATRIP to the RPA-ssDNA complex, Mus musculus Reactome:REACT_96115 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Caenorhabditis elegans Reactome:REACT_107423 Loading of claspin onto DNA during replication origin firing, Bos taurus Reactome:REACT_80988 Activation of claspin, Homo sapiens Reactome:REACT_6750 Recruitment and activation of Chk1, Canis familiaris Reactome:REACT_106732 Stalling of DNA replication fork and RPA binding, Danio rerio Reactome:REACT_92706 Recruitment and activation of Chk1, Gallus gallus Reactome:REACT_104547 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Xenopus tropicalis Reactome:REACT_92644 Activation of ATR in response to replication stress, Canis familiaris Reactome:REACT_91302 Stalling of DNA replication fork and RPA binding, Mus musculus Reactome:REACT_86410 Loading of claspin onto DNA during replication origin firing, Canis familiaris Reactome:REACT_53588 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Danio rerio Reactome:REACT_90809 Recruitment of Rad17-RFC complex to DNA, Taeniopygia guttata Reactome:REACT_90838 Recruitment and activation of Chk1, Xenopus tropicalis Reactome:REACT_33874 Activation of ATR in response to replication stress, Gallus gallus Reactome:REACT_102679 Activation of ATR in response to replication stress, Sus scrofa Reactome:REACT_89439 Stalling of DNA replication fork and RPA binding, Rattus norvegicus Reactome:REACT_109137 Recruitment and activation of Chk1, Mus musculus Reactome:REACT_96804 Activation of claspin, Rattus norvegicus Reactome:REACT_30149 Activation of ATR in response to replication stress, Saccharomyces cerevisiae Reactome:REACT_112472 Recruitment of Rad17-RFC complex to DNA, Mus musculus Reactome:REACT_32546 Loading of claspin onto DNA during replication origin firing, Danio rerio Reactome:REACT_105467 Activation of claspin, Taeniopygia guttata Reactome:REACT_95329 Activation of ATR in response to replication stress, Mus musculus Reactome:REACT_100559 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Canis familiaris Reactome:REACT_79188 Binding of ATR-ATRIP to the RPA-ssDNA complex, Homo sapiens Reactome:REACT_6939 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Bos taurus Reactome:REACT_96998 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Homo sapiens Reactome:REACT_6729 Activation of ATR in response to replication stress, Dictyostelium discoideum Reactome:REACT_79450 GOC:mah The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. Loading of claspin onto DNA during replication origin firing, Drosophila melanogaster Reactome:REACT_89725 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Drosophila melanogaster Reactome:REACT_106382 Binding of ATR-ATRIP to the RPA-ssDNA complex, Bos taurus Reactome:REACT_106104 transcription, DNA-templated DNA-dependent transcription GO:0006350 GO:0006351 GO:0061018 GO:0061022 The cellular synthesis of RNA on a template of DNA. Wikipedia:Transcription_(genetics) biological_process cellular transcription cellular transcription, DNA-dependent transcription transcription regulator activity transcription, DNA-dependent GOC:jl GOC:txnOH The cellular synthesis of RNA on a template of DNA. GOC:txnOH transcription, DNA-dependent translation GO:0006412 GO:0006416 GO:0006453 GO:0043037 Reactome:REACT_100338 Reactome:REACT_100851 Reactome:REACT_101045 Reactome:REACT_101324 Reactome:REACT_1014 Reactome:REACT_103420 Reactome:REACT_105544 Reactome:REACT_29980 Reactome:REACT_33559 Reactome:REACT_77710 Reactome:REACT_79784 Reactome:REACT_81734 Reactome:REACT_81833 Reactome:REACT_82171 Reactome:REACT_83429 Reactome:REACT_83530 Reactome:REACT_86996 Reactome:REACT_95535 Reactome:REACT_96394 The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. Wikipedia:Translation_(genetics) biological_process protein anabolism protein biosynthesis protein biosynthetic process protein formation protein synthesis protein translation Translation, Mus musculus Reactome:REACT_95535 Translation, Bos taurus Reactome:REACT_29980 Translation, Rattus norvegicus Reactome:REACT_33559 Translation, Drosophila melanogaster Reactome:REACT_77710 GOC:go_curators The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. Translation, Caenorhabditis elegans Reactome:REACT_81833 Translation, Escherichia coli Reactome:REACT_96394 Translation, Plasmodium falciparum Reactome:REACT_103420 Translation, Canis familiaris Reactome:REACT_101324 GOC:curators protein biosynthetic process Translation, Xenopus tropicalis Reactome:REACT_82171 Translation, Gallus gallus Reactome:REACT_83530 Translation, Homo sapiens Reactome:REACT_1014 Translation, Arabidopsis thaliana Reactome:REACT_105544 Translation, Saccharomyces cerevisiae Reactome:REACT_100851 Translation, Oryza sativa Reactome:REACT_86996 Translation, Dictyostelium discoideum Reactome:REACT_101045 Translation, Danio rerio Reactome:REACT_79784 Translation, Sus scrofa Reactome:REACT_100338 Translation, Schizosaccharomyces pombe Reactome:REACT_81734 Translation, Taeniopygia guttata Reactome:REACT_83429 cellular aromatic compound metabolic process GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. aromatic compound metabolism aromatic hydrocarbon metabolic process aromatic hydrocarbon metabolism biological_process GOC:ai ISBN:0198506732 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. nitrogen compound metabolic process GO:0006807 Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node. The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. biological_process nitrogen compound metabolism CHEBI:51143 GOC:go_curators GOC:jl ISBN:0198506732 The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. cellular component movement GO:0006928 Note that in GO cellular components include whole cells (cell is_a cellular component). The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore. biological_process cell movement cellular component motion GOC:dgh GOC:dph GOC:jl GOC:mlg The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore. GOC:dph GOC:jl cellular component motion chemotaxis GO:0006935 The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). Wikipedia:Chemotaxis biological_process taxis in response to chemical stimulus ISBN:0198506732 The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). chromosome segregation GO:0007059 The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. Wikipedia:Chromosome_segregation biological_process chromosome division chromosome transmission GOC:jl GOC:mah GOC:mtg_cell_cycle GOC:vw The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. biological_process Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. GO:0000004 GO:0007582 GO:0008150 Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. Wikipedia:Biological_process biological process biological_process physiological process Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. GOC:go_curators GOC:isa_complete metabolic process GO:0008152 Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. Wikipedia:Metabolism biological_process metabolic process resulting in cell growth metabolism metabolism resulting in cell growth GOC:go_curators ISBN:0198547684 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. biosynthetic process GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. Wikipedia:Anabolism anabolism biological_process biosynthesis formation synthesis GOC:curators ISBN:0198547684 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. macromolecule biosynthetic process GO:0009059 GO:0043284 The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. biological_process biopolymer biosynthetic process macromolecule anabolism macromolecule biosynthesis macromolecule formation macromolecule synthesis CHEBI:33694 GOC:mah The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GOC:mtg_chebi_dec09 biopolymer biosynthetic process energy taxis GO:0009453 The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. biological_process energytaxis taxis in response to energy source GOC:jl PMID:11029423 The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. aerotaxis GO:0009454 The directed movement of a motile cell or organism in response to environmental oxygen. biological_process taxis in response to atmospheric oxygen GOC:jl ISBN:0192801023 The directed movement of a motile cell or organism in response to environmental oxygen. response to external stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. GO:0009605 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process response to environmental stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. GOC:hb spore germination GO:0009847 The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). biological_process GOC:lr The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). negative regulation of metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. GO:0009892 biological_process down regulation of metabolic process down-regulation of metabolic process downregulation of metabolic process inhibition of metabolic process negative regulation of metabolism Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. GOC:go_curators cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. GO:0008151 GO:0009987 GO:0050875 biological_process cell growth and/or maintenance cell physiology cellular physiological process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. GOC:go_curators GOC:isa_complete gene expression GO:0010467 Reactome:REACT_100537 Reactome:REACT_101147 Reactome:REACT_101952 Reactome:REACT_105649 Reactome:REACT_108313 Reactome:REACT_29068 Reactome:REACT_34240 Reactome:REACT_71 Reactome:REACT_78136 Reactome:REACT_78959 Reactome:REACT_79662 Reactome:REACT_85241 Reactome:REACT_85359 Reactome:REACT_86357 Reactome:REACT_89816 Reactome:REACT_91657 Reactome:REACT_91965 Reactome:REACT_93586 Reactome:REACT_93968 Reactome:REACT_94814 Reactome:REACT_98256 The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. Wikipedia:Gene_expression biological_process Gene Expression, Saccharomyces cerevisiae Reactome:REACT_98256 Gene Expression, Rattus norvegicus Reactome:REACT_91965 Gene Expression, Canis familiaris Reactome:REACT_86357 Gene Expression, Danio rerio Reactome:REACT_101147 Gene Expression, Homo sapiens Reactome:REACT_71 Gene Expression, Schizosaccharomyces pombe Reactome:REACT_94814 Gene Expression, Mycobacterium tuberculosis Reactome:REACT_89816 Gene Expression, Taeniopygia guttata Reactome:REACT_78959 Gene Expression, Plasmodium falciparum Reactome:REACT_79662 Gene Expression, Drosophila melanogaster Reactome:REACT_105649 Gene Expression, Sus scrofa Reactome:REACT_101952 Gene Expression, Escherichia coli Reactome:REACT_29068 Gene Expression, Staphylococcus aureus N315 Reactome:REACT_34240 Gene Expression, Oryza sativa Reactome:REACT_85241 Gene Expression, Caenorhabditis elegans Reactome:REACT_108313 Gene Expression, Dictyostelium discoideum Reactome:REACT_93586 Gene Expression, Bos taurus Reactome:REACT_93968 Gene Expression, Arabidopsis thaliana Reactome:REACT_91657 Gene Expression, Mus musculus Reactome:REACT_78136 Gene Expression, Gallus gallus Reactome:REACT_85359 Gene Expression, Xenopus tropicalis Reactome:REACT_100537 GOC:dph GOC:tb The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. GO:0010468 Wikipedia:Regulation_of_gene_expression biological_process regulation of gene product expression regulation of protein expression Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. GOC:dph GOC:tb GOC:curators regulation of gene product expression GOC:curators regulation of protein expression negative regulation of macromolecule metabolic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GO:0010605 biological_process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GOC:dph GOC:tb negative regulation of gene expression Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. GO:0010629 biological_process Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. GOC:dph GOC:tb RNA metabolic process GO:0016070 RNA metabolism Reactome:REACT_107259 Reactome:REACT_107652 Reactome:REACT_110289 Reactome:REACT_21257 Reactome:REACT_30579 Reactome:REACT_31367 Reactome:REACT_33720 Reactome:REACT_80071 Reactome:REACT_83630 Reactome:REACT_84169 Reactome:REACT_85788 Reactome:REACT_88316 Reactome:REACT_89992 Reactome:REACT_91556 Reactome:REACT_92152 Reactome:REACT_94876 Reactome:REACT_99403 Reactome:REACT_99885 The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. biological_process Metabolism of RNA, Schizosaccharomyces pombe Reactome:REACT_107652 Metabolism of RNA, Arabidopsis thaliana Reactome:REACT_94876 Metabolism of RNA, Drosophila melanogaster Reactome:REACT_92152 Metabolism of RNA, Caenorhabditis elegans Reactome:REACT_80071 Metabolism of RNA, Bos taurus Reactome:REACT_91556 Metabolism of RNA, Oryza sativa Reactome:REACT_85788 ISBN:0198506732 The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Metabolism of RNA, Xenopus tropicalis Reactome:REACT_30579 Metabolism of RNA, Danio rerio Reactome:REACT_110289 Metabolism of RNA, Sus scrofa Reactome:REACT_107259 Metabolism of RNA, Dictyostelium discoideum Reactome:REACT_31367 Metabolism of RNA, Mus musculus Reactome:REACT_88316 Metabolism of RNA, Rattus norvegicus Reactome:REACT_99403 Metabolism of RNA, Homo sapiens Reactome:REACT_21257 Metabolism of RNA, Canis familiaris Reactome:REACT_84169 Metabolism of RNA, Plasmodium falciparum Reactome:REACT_33720 Metabolism of RNA, Gallus gallus Reactome:REACT_99885 Metabolism of RNA, Saccharomyces cerevisiae Reactome:REACT_89992 Metabolism of RNA, Taeniopygia guttata Reactome:REACT_83630 gene silencing Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. GO:0016458 Note that this process is the opposite of long-term maintenance of gene activation. Wikipedia:Gene_silencing biological_process long-term maintenance of gene inactivation Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. GOC:dph GOC:jid GOC:tb heterocycle biosynthetic process GO:0018130 The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). biological_process heterocycle anabolism heterocycle biosynthesis heterocycle formation heterocycle synthesis ISBN:0198547684 The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). regulation of metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. GO:0019222 biological_process regulation of metabolism Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. GOC:go_curators aromatic compound biosynthetic process GO:0019438 The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. aromatic compound anabolism aromatic compound biosynthesis aromatic compound formation aromatic compound synthesis aromatic hydrocarbon biosynthesis aromatic hydrocarbon biosynthetic process biological_process GOC:ai The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. protein metabolic process GO:0006411 GO:0019538 The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. Wikipedia:Protein_metabolism biological_process protein metabolic process and modification protein metabolism protein metabolism and modification GOC:ma The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. asexual reproduction GO:0019954 The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process. Wikipedia:Asexual_reproduction biological_process ISBN:0387520546 The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process. cell cycle process GO:0022402 The cellular process that ensures successive accurate and complete genome replication and chromosome segregation. biological_process GOC:isa_complete GOC:mtg_cell_cycle The cellular process that ensures successive accurate and complete genome replication and chromosome segregation. cell differentiation GO:0030154 The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. Wikipedia:Cellular_differentiation biological_process ISBN:0198506732 The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. sporulation resulting in formation of a cellular spore GO:0030435 Note that the synonym 'spore differentiation', like the term name and definition, refers to differentiation into a spore rather than any subsequent developmental changes that a spore may undergo. The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. Wikipedia:Sporogenesis biological_process cellular spore formation by sporulation spore biosynthesis spore differentiation spore formation GOC:mah GOC:pamgo_curators ISBN:0072992913 The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. GOC:dph GOC:tb cellular spore formation by sporulation asexual sporulation GO:0030436 The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species. asexual spore formation biological_process mitotic spore formation mitotic sporulation GOC:mah PMID:9529886 The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species. envelope A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers. GO:0031975 cellular_component A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers. GOC:mah GOC:pz transposition Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. GO:0032196 Wikipedia:Transposon biological_process Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. GOC:jp ISBN:1555812090 developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. GO:0032502 biological_process development A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. GOC:isa_complete RNA biosynthetic process GO:0032774 RNA anabolism RNA biosynthesis RNA formation RNA synthesis The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. biological_process GOC:mah The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. endospore formation GO:0034301 The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions. biological_process GOC:ds GOC:mah ISBN:0470090278 The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions. myxospore formation GO:0034303 The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria. biological_process GOC:ds ISBN:0122268008 The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria. cellular nitrogen compound metabolic process GO:0034641 Reactome:REACT_102000 Reactome:REACT_103710 Reactome:REACT_107293 Reactome:REACT_108179 Reactome:REACT_109042 Reactome:REACT_13 Reactome:REACT_28699 Reactome:REACT_29108 Reactome:REACT_32429 Reactome:REACT_33347 Reactome:REACT_34326 Reactome:REACT_55564 Reactome:REACT_77741 Reactome:REACT_82379 Reactome:REACT_86268 Reactome:REACT_90299 Reactome:REACT_91959 Reactome:REACT_93580 Reactome:REACT_95666 Reactome:REACT_98086 Reactome:REACT_99241 The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. biological_process cellular nitrogen compound metabolism Metabolism of amino acids and derivatives, Dictyostelium discoideum Reactome:REACT_98086 Metabolism of amino acids and derivatives, Caenorhabditis elegans Reactome:REACT_29108 Metabolism of amino acids and derivatives, Rattus norvegicus Reactome:REACT_32429 GOC:mah The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. Metabolism of amino acids and derivatives, Saccharomyces cerevisiae Reactome:REACT_28699 Metabolism of amino acids and derivatives, Xenopus tropicalis Reactome:REACT_108179 Metabolism of amino acids and derivatives, Sus scrofa Reactome:REACT_109042 Metabolism of amino acids and derivatives, Canis familiaris Reactome:REACT_95666 Metabolism of amino acids and derivatives, Taeniopygia guttata Reactome:REACT_77741 Metabolism of amino acids and derivatives, Mus musculus Reactome:REACT_33347 Metabolism of amino acids and derivatives, Oryza sativa Reactome:REACT_90299 Metabolism of amino acids and derivatives, Homo sapiens Reactome:REACT_13 Metabolism of amino acids and derivatives, Escherichia coli Reactome:REACT_103710 Metabolism of amino acids and derivatives, Gallus gallus Reactome:REACT_55564 Metabolism of amino acids and derivatives, Arabidopsis thaliana Reactome:REACT_107293 Metabolism of amino acids and derivatives, Mycobacterium tuberculosis Reactome:REACT_102000 Metabolism of amino acids and derivatives, Staphylococcus aureus N315 Reactome:REACT_34326 Metabolism of amino acids and derivatives, Plasmodium falciparum Reactome:REACT_91959 Metabolism of amino acids and derivatives, Drosophila melanogaster Reactome:REACT_86268 Metabolism of amino acids and derivatives, Danio rerio Reactome:REACT_93580 Metabolism of amino acids and derivatives, Schizosaccharomyces pombe Reactome:REACT_99241 Metabolism of amino acids and derivatives, Bos taurus Reactome:REACT_82379 cellular macromolecule biosynthetic process GO:0034645 GO:0034961 The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells. biological_process cellular biopolymer biosynthetic process cellular macromolecule anabolism cellular macromolecule biosynthesis cellular macromolecule formation cellular macromolecule synthesis GOC:mtg_chebi_dec09 cellular biopolymer biosynthetic process GOC:mah cellular macromolecule anabolism GOC:mah cellular macromolecule formation GOC:mah cellular macromolecule biosynthesis GOC:mah cellular macromolecule synthesis CHEBI:33694 GOC:mah The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells. nucleobase-containing compound biosynthetic process GO:0034654 The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids. biological_process nucleobase, nucleoside, nucleotide and nucleic acid anabolism nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis nucleobase, nucleoside, nucleotide and nucleic acid formation nucleobase, nucleoside, nucleotide and nucleic acid synthesis GOC:mah The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids. growth GO:0040007 GO:0048590 See also the biological process term 'cell growth ; GO:0016049'. The increase in size or mass of an entire organism, a part of an organism or a cell. biological_process growth pattern non-developmental growth GOC:mah non-developmental growth GOC:bf GOC:ma The increase in size or mass of an entire organism, a part of an organism or a cell. locomotion GO:0040011 Self-propelled movement of a cell or organism from one location to another. biological_process GOC:dgh Self-propelled movement of a cell or organism from one location to another. response to chemical Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. GO:0042221 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process response to chemical stimulus response to chemical substance GOC:dos response to chemical stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. GOC:jl taxis GO:0042330 The directed movement of a motile cell or organism in response to an external stimulus. Wikipedia:Taxis biological_process directed movement in response to stimulus GOC:jl ISBN:0192801023 The directed movement of a motile cell or organism in response to an external stimulus. cell projection A prolongation or process extending from a cell, e.g. a flagellum or axon. GO:0042995 cell process cellular process cellular projection cellular_component A prolongation or process extending from a cell, e.g. a flagellum or axon. GOC:jl http://www.cogsci.princeton.edu/~wn/ type IV pilus-dependent motility Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility. GO:0043107 TFP-dependent motility TFP-dependent movement biological_process social gliding motility twitching motility type 4 pilus-dependent motility type four pilus-dependent motility Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility. GOC:go_curators PMID:12704238 heterocyst differentiation GO:0043158 The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. biological_process heterocyst biosynthesis heterocyst cell differentiation heterocyst formation GOC:jl The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. macromolecule metabolic process GO:0043170 GO:0043283 The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. biological_process biopolymer metabolic process macromolecule metabolism GOC:mtg_chebi_dec09 biopolymer metabolic process CHEBI:33694 GOC:mah The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. sporulation GO:0043934 The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. Wikipedia:Spore biological_process GOC:pamgo_curators The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. asexual sporulation resulting in formation of a cellular spore GO:0043936 The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. biological_process GOC:pamgo_curators The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. cellular metabolic process GO:0044237 The chemical reactions and pathways by which individual cells transform chemical substances. biological_process cellular metabolism intermediary metabolism GOC:mah intermediary metabolism GOC:go_curators The chemical reactions and pathways by which individual cells transform chemical substances. primary metabolic process GO:0044238 The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. biological_process primary metabolism GOC:go_curators The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. http://www.metacyc.org cellular biosynthetic process GO:0044249 The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. biological_process cellular anabolism cellular biosynthesis cellular formation cellular synthesis GOC:jl The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. cellular macromolecule metabolic process GO:0034960 GO:0044260 The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells. biological_process cellular biopolymer metabolic process cellular macromolecule metabolism CHEBI:33694 GOC:mah The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells. GOC:mtg_chebi_dec09 cellular biopolymer metabolic process cellular protein metabolic process GO:0044267 Reactome:REACT_101554 Reactome:REACT_102155 Reactome:REACT_105825 Reactome:REACT_106151 Reactome:REACT_108005 Reactome:REACT_109022 Reactome:REACT_17015 Reactome:REACT_32904 Reactome:REACT_34473 Reactome:REACT_80561 Reactome:REACT_81994 Reactome:REACT_82523 Reactome:REACT_85873 Reactome:REACT_86658 Reactome:REACT_89852 Reactome:REACT_91052 Reactome:REACT_93132 Reactome:REACT_96466 Reactome:REACT_99179 The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification. biological_process cellular protein metabolism Metabolism of proteins, Bos taurus Reactome:REACT_108005 Metabolism of proteins, Danio rerio Reactome:REACT_82523 Metabolism of proteins, Saccharomyces cerevisiae Reactome:REACT_85873 Metabolism of proteins, Oryza sativa Reactome:REACT_99179 Metabolism of proteins, Taeniopygia guttata Reactome:REACT_34473 Metabolism of proteins, Xenopus tropicalis Reactome:REACT_106151 Metabolism of proteins, Escherichia coli Reactome:REACT_80561 Metabolism of proteins, Dictyostelium discoideum Reactome:REACT_105825 Metabolism of proteins, Arabidopsis thaliana Reactome:REACT_102155 Metabolism of proteins, Sus scrofa Reactome:REACT_81994 Metabolism of proteins, Homo sapiens Reactome:REACT_17015 Metabolism of proteins, Schizosaccharomyces pombe Reactome:REACT_109022 Metabolism of proteins, Gallus gallus Reactome:REACT_101554 Metabolism of proteins, Canis familiaris Reactome:REACT_32904 Metabolism of proteins, Mus musculus Reactome:REACT_93132 Metabolism of proteins, Plasmodium falciparum Reactome:REACT_96466 GOC:jl The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification. Metabolism of proteins, Rattus norvegicus Reactome:REACT_89852 Metabolism of proteins, Drosophila melanogaster Reactome:REACT_86658 Metabolism of proteins, Caenorhabditis elegans Reactome:REACT_91052 cellular nitrogen compound biosynthetic process GO:0044271 The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds. biological_process nitrogen compound anabolism nitrogen compound biosynthesis nitrogen compound formation nitrogen compound synthesis GOC:jl ISBN:0198506732 The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds. cell part Any constituent part of a cell, the basic structural and functional unit of all organisms. GO:0044464 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cellular subcomponent cellular_component protoplast NIF_Subcellular:sao628508602 cellular subcomponent Any constituent part of a cell, the basic structural and functional unit of all organisms. GOC:jl GOC:mah protoplast single-organism process A biological process that involves only one organism. GO:0044699 biological_process single organism process A biological process that involves only one organism. GOC:jl single-organism metabolic process A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism. GO:0044710 biological_process A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism. GOC:jl single-organism biosynthetic process A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. GO:0044711 biological_process A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. GOC:jl single-organism cellular process Any process that is carried out at the cellular level, occurring within a single organism. GO:0044763 biological_process Any process that is carried out at the cellular level, occurring within a single organism. GOC:jl single-organism developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. GO:0044767 biological_process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. GOC:jl cell cycle DNA replication GO:0044786 The DNA-dependent DNA replication that takes place as part of the cell cycle. biological_process GOC:mtg_cell_cycle The DNA-dependent DNA replication that takes place as part of the cell cycle. heterocycle metabolic process GO:0046483 The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). biological_process heterocycle metabolism CHEBI:5686 ISBN:0198506732 The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). negative regulation of biological process Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GO:0043118 GO:0048519 biological_process down regulation of biological process down-regulation of biological process downregulation of biological process inhibition of biological process negative regulation of physiological process Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GOC:jid anatomical structure formation involved in morphogenesis GO:0048646 Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense. The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. biological_process formation of an anatomical structure involved in morphogenesis GOC:dph GOC:jid GOC:tb The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:dph GOC:tb formation of an anatomical structure involved in morphogenesis cellular developmental process A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition. GO:0048869 biological_process A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition. GOC:isa_complete cell motility Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another. GO:0048870 biological_process cell locomotion cell movement movement of a cell Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another. GOC:dgh GOC:dph GOC:isa_complete GOC:mlg regulation of biological process Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GO:0050789 GO:0050791 biological_process regulation of physiological process Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GOC:ai GOC:go_curators response to stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. GO:0050896 GO:0051869 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process physiological response to stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. GOC:ai GOC:bf localization Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location. GO:0051179 biological_process establishment and maintenance of cellular component location establishment and maintenance of localization establishment and maintenance of position establishment and maintenance of substance location establishment and maintenance of substrate location localisation Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location. GOC:ai GOC:mah localisation regulation of macromolecule metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GO:0060255 biological_process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GOC:dph GOC:tb biological regulation Any process that modulates a measurable attribute of any biological process, quality or function. GO:0065007 biological_process regulation Any process that modulates a measurable attribute of any biological process, quality or function. GOC:dph GOC:isa_complete GOC:mah GOC:pr GOC:vw organic substance metabolic process GO:0071704 The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. biological_process organic molecular entity metabolic process organic molecular entity metabolism organic substance metabolism CHEBI:50860 GOC:mah The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. bacterial-type flagellum-dependent cell motility Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope. GO:0071973 bacterial-type flagellar cell motility biological_process flagellin-based flagellar cell motility GOC:mah flagellin-based flagellar cell motility Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope. GOC:cilia GOC:krc GOC:mah cell swimming Cell motility that results in the smooth movement of a cell through a liquid medium. GO:0071975 biological_process cell swimming motility Cell motility that results in the smooth movement of a cell through a liquid medium. PMID:18461074 GOC:mah cell swimming motility cell gliding Cell motility that results in the smooth movement of a cell along a solid surface. GO:0071976 biological_process cell gliding motility Cell motility that results in the smooth movement of a cell along a solid surface. PMID:18461074 GOC:mah cell gliding motility bacterial-type flagellum-dependent swarming motility Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria. GO:0071978 bacterial-type flagellar swarming motility bacterial-type flagellum-mediated cell swarming biological_process GOC:mah bacterial-type flagellum-mediated cell swarming Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria. GOC:cilia PMID:14527279 PMID:18461074 nucleic acid metabolic process Any cellular metabolic process involving nucleic acids. GO:0090304 biological_process Any cellular metabolic process involving nucleic acids. GOC:dph GOC:tb archaeal or bacterial-type flagellum-dependent cell motility Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. This term was added for mapping to the UniProt keyword "flagellar rotation". For manual annotation, please use one of the child terms of GO:0097588 that refer specifically to either archaeal- or bacterial-type flagella. Cell motility due to movement of bacterial- or archaeal-type flagella. GO:0097588 biological_process Cell motility due to movement of bacterial- or archaeal-type flagella. GOC:cilia GOC:krc organic cyclic compound metabolic process GO:1901360 The chemical reactions and pathways involving organic cyclic compound. biological_process organic cyclic compound metabolism GOC:TermGenie organic cyclic compound metabolism GOC:TermGenie The chemical reactions and pathways involving organic cyclic compound. organic cyclic compound biosynthetic process GO:1901362 The chemical reactions and pathways resulting in the formation of organic cyclic compound. biological_process organic cyclic compound anabolism organic cyclic compound biosynthesis organic cyclic compound formation organic cyclic compound synthesis GOC:TermGenie organic cyclic compound anabolism GOC:TermGenie organic cyclic compound formation GOC:TermGenie organic cyclic compound synthesis GOC:TermGenie The chemical reactions and pathways resulting in the formation of organic cyclic compound. GOC:TermGenie organic cyclic compound biosynthesis organic substance biosynthetic process GO:1901576 The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon. biological_process organic molecular entity anabolism organic molecular entity biosynthesis organic molecular entity biosynthetic process organic molecular entity formation organic molecular entity synthesis organic substance anabolism organic substance biosynthesis organic substance formation organic substance synthesis GOC:TermGenie organic molecular entity biosynthesis GOC:TermGenie organic molecular entity anabolism GOC:TermGenie GOC:pr The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon. GOC:TermGenie organic molecular entity synthesis GOC:TermGenie organic molecular entity formation microbial phenotype 2011-03-10T04:01:50Z OMP:0000000 The observable manifestation of the genotype of a microbial cell or group of cells in an environment. microbial_phenotype OMP:MCC The observable manifestation of the genotype of a microbial cell or group of cells in an environment. motility phenotype 2011-03-10T06:55:06Z A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. GO:0048870 OMP:0000001 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. OMP:MCC cell motility GO:0048870 decreased motility 2011-03-10T07:02:42Z An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control. OMP:0000002 PATO:0002297 microbial_phenotype An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control. OMP:MCC cell arrangement phenotype 2011-04-14T02:30:07Z A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another. OMP:0000003 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another. OMP:MCC taxis phenotype 2011-04-14T03:29:20Z A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus. OMP:0000004 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus. ISBN:0192800329 OMP:MCC presence of motility 2011-04-14T03:35:35Z A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another. OMP:0000005 mchibucos microbial_phenotype motile A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another. OMP:MCC presence of akinete formation 2011-04-26T02:51:36Z An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete. OMP:0000006 mchibucos microbial_phenotype An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete. OMP:MCC absence of akinete formation 2011-04-26T02:52:52Z An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete. OMP:0000007 mchibucos microbial_phenotype An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete. OMP:MCC presence of budding 2011-04-26T02:58:46Z A budding phenotype where an organism reproduces by the process of budding. OMP:0000008 mchibucos microbial_phenotype A budding phenotype where an organism reproduces by the process of budding. OMP:MCC decreased cell surface area-to-volume ratio 2020-07-22T22:22:03Z OMP:0000009 microbial_phenotype siegele presence of heterocysts 2011-04-26T02:59:42Z A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst. OMP:0000010 mchibucos microbial_phenotype A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst. OMP:MCC absence of heterocysts 2011-04-26T02:59:42Z A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst. OMP:0000011 mchibucos microbial_phenotype A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst. OMP:MCC abolished spore germination efficiency 2011-04-26T03:01:38Z A decreased spore germination phenotype where no spores germinate. OMP:0000012 mchibucos microbial_phenotype A decreased spore germination phenotype where no spores germinate. OMP:MCC decreased endospore formation 2011-06-07T10:14:15Z An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control. OMP:0000013 mchibucos microbial_phenotype An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control. OMP:JCH increased endospore formation 2011-06-07T10:14:39Z An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control. OMP:0000014 mchibucos microbial_phenotype An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control. OMP:JCH decreased heterocyst formation 2011-04-26T03:05:35Z A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control. OMP:0000015 mchibucos microbial_phenotype A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control. OMP:MCC delayed spore germination 2011-04-26T03:07:11Z A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period. OMP:0000016 mchibucos microbial_phenotype A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period. OMP:MCC presence of endospore formation 2011-04-26T03:09:10Z An endospore formation phenotype where the cell possesses the ability to form an endospore. OMP:0000017 mchibucos microbial_phenotype An endospore formation phenotype where the cell possesses the ability to form an endospore. OMP:MCC absence of endospore formation 2011-04-26T03:09:25Z An endospore formation phenotype where the cell does not possess the ability to form an endospore. OMP:0000018 mchibucos microbial_phenotype An endospore formation phenotype where the cell does not possess the ability to form an endospore. OMP:MCC increased cell surface area-to-volume ratio 2020-07-22T22:22:03Z OMP:0000019 microbial_phenotype siegele presence of myxospore formation 2011-04-26T03:10:51Z A myxospore formation phenotype where an organism possesses the ability to form myxospores. OMP:0000020 mchibucos microbial_phenotype A myxospore formation phenotype where an organism possesses the ability to form myxospores. OMP:MCC absence of myxospore formation 2011-04-26T03:10:51Z A myxospore formation phenotype where an organism does not possess the ability to form myxospores. OMP:0000021 mchibucos microbial_phenotype A myxospore formation phenotype where an organism does not possess the ability to form myxospores. OMP:MCC decreased myxospore formation 2011-04-26T03:10:51Z An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control. OMP:0000022 mchibucos microbial_phenotype An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control. OMP:MCC periplasmic flagellum/flagella 2011-06-07T11:12:48Z A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope. OMP:0000023 axial fibril axial filament endoflagella mchibucos microbial_phenotype A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope. ISBN:9780073402406 OMP:DAS altered flagellum length 2011-06-07T11:19:56Z An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control. OMP:0000024 mchibucos microbial_phenotype An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control. OMP:MCC altered cell surface area-to-volume ratio variability 2020-07-22T22:23:15Z OMP:0000025 microbial_phenotype siegele host-virus interaction phenotype 2011-06-06T02:39:55Z A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus. OMP:0000026 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. host-bacteriophage interaction phenotype host-phage interaction phenotype mchibucos microbial_phenotype A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus. OMP:JCH flagellum morphology phenotype 2011-04-26T03:26:26Z A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell. OMP:0000027 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. axial filament phenotype mchibucos microbial_phenotype A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell. OMP:MCC decreased number of pili 2011-04-26T03:29:28Z A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control. OMP:0000028 decreased fimbriae formation mchibucos microbial_phenotype A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control. OMP:MCC presence of flagellum 2011-04-26T03:29:34Z A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments. OMP:0000029 mchibucos microbial_phenotype A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments. OMP:MCC absence of flagellum 2011-04-26T03:29:50Z A flagellum phenotype where the organism does not possess a flagellum or flagella. OMP:0000030 mchibucos microbial_phenotype non-flagellated phenotype A flagellum phenotype where the organism does not possess a flagellum or flagella. OMP:MCC altered flagellum shape 2011-04-26T03:41:37Z An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control. OMP:0000031 mchibucos microbial_phenotype An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control. OMP:MCC decreased cell surface area-to-volume ratio variability 2020-07-22T22:24:44Z OMP:0000032 microbial_phenotype siegele absence of pilus 2011-04-26T03:44:01Z A pilus phenotype where an organism does not possess a pilus. OMP:0000033 fimbria absent mchibucos microbial_phenotype A pilus phenotype where an organism does not possess a pilus. OMP:MCC presence of pilus 2011-04-26T03:44:22Z A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions. Fimbria (plural, fimbriae) is a common synonym for pilus (plural, pili). OMP:0000034 fimbria present mchibucos microbial_phenotype A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions. OMP:MCC malformed pilus 2011-04-26T03:44:34Z A pilus phenotype where the cell possesses a pilus that was distorted during formation. OMP:0000035 malformed fimbrium mchibucos microbial_phenotype A pilus phenotype where the cell possesses a pilus that was distorted during formation. OMP:MCC increased amount of capsule 2011-06-07T10:53:11Z An altered capsule phenotype where the amount of capsule is increased relative to a designated control. OMP:0000036 mchibucos microbial_phenotype An altered capsule phenotype where the amount of capsule is increased relative to a designated control. OMP:DAS increased flagellum length 2011-06-07T11:25:05Z An altered flagellum length phenotype where the length of the flagellum is longer than a designated control. OMP:0000037 mchibucos microbial_phenotype An altered flagellum length phenotype where the length of the flagellum is longer than a designated control. OMP:MCC increased cell surface area-to-volume ratio variability 2020-07-22T22:24:44Z OMP:0000038 microbial_phenotype siegele O2 effects on population growth phenotype 2011-06-06T03:36:04Z A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment. OMP:0000039 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment. OMP:WAM decreased cell size 2011-04-26T03:47:26Z An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control. OMP:0000040 mchibucos microbial_phenotype An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control. OMP:MCC increased cell size 2011-04-26T03:49:09Z An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control. OMP:0000041 mchibucos microbial_phenotype An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control. OMP:MCC anucleoid 2011-04-26T03:51:47Z A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population. OMP:0000042 mchibucos microbial_phenotype A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population. OMP:DAS nucleoid number phenotype 2011-04-26T03:53:34Z A nucleoid phenotype dealing with the number of nucleoid regions in the cell. OMP:0000043 mchibucos microbial_phenotype A nucleoid phenotype dealing with the number of nucleoid regions in the cell. OMP:WAM altered cell circularity 2020-07-22T22:30:41Z Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2). OMP:0000044 microbial_phenotype siegele Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2). OMP:das increased motility 2011-04-26T04:08:26Z An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control. OMP:0000045 PATO:0002298 mchibucos microbial_phenotype An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control. OMP:MCC presence of chemotaxis 2011-04-26T04:17:42Z A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient. OMP:0000046 mchibucos microbial_phenotype A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient. OMP:MCC aerotaxis phenotype 2011-04-26T04:18:11Z A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2). GO:0009454 OMP:0000047 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2). ISBN:0192800329 OMP:MCC aerotaxis GO:0009454 chemotaxis phenotype 2011-04-26T04:27:11Z A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient. GO:0006935 OMP:0000048 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. ChEBI cross product candidate (and child terms). mchibucos microbial_phenotype A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient. ISBN:0198506732 OMP:MCC presence of aerotaxis 2011-04-26T04:27:42Z An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2). OMP:0000049 mchibucos microbial_phenotype An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2). OMP:MCC decreased amount of capsule 2011-06-07T10:53:59Z An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control. OMP:0000050 mchibucos microbial_phenotype An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control. OMP:DAS decreased cell circularity 2020-07-22T22:32:02Z OMP:0000051 microbial_phenotype siegele presence of positive chemotaxis 2011-04-26T04:42:14Z A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical. OMP:0000052 mchibucos microbial_phenotype A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical. OMP:MCC presence of negative chemotaxis 2011-04-26T04:42:14Z A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical). OMP:0000053 mchibucos microbial_phenotype repellent A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical). OMP:MCC absence of positive chemotaxis 2011-04-26T04:42:14Z An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical. OMP:0000054 mchibucos microbial_phenotype An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical. OMP:MCC absence of negative chemotaxis 2011-04-26T04:42:14Z An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical. OMP:0000055 mchibucos microbial_phenotype An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical. OMP:MCC presence of positive aerotaxis 2011-04-26T04:44:17Z A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen. GO:0052131 OMP:0000056 mchibucos microbial_phenotype A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen. OMP:MCC presence of negative aerotaxis 2011-04-26T04:44:17Z A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen. GO:0052130 OMP:0000057 mchibucos microbial_phenotype A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen. OMP:MCC absence of positive aerotaxis 2011-04-26T04:44:17Z An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2). OMP:0000058 mchibucos microbial_phenotype An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2). OMP:MCC absence of negative aerotaxis 2011-04-26T04:44:17Z An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2). OMP:0000059 mchibucos microbial_phenotype An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2). OMP:MCC presence of quorum sensing 2011-04-26T05:02:51Z A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. OMP:0000060 mchibucos microbial_phenotype A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. OMP:MCC decreased virulence 2011-04-26T05:02:57Z An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control. OMP:0000061 PATO:0002147 less virulent mchibucos microbial_phenotype An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control. OMP:MCC increased virulence 2011-04-26T05:03:12Z An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control. OMP:0000062 PATO:0002148 mchibucos microbial_phenotype more virulent An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control. OMP:MCC absence of quorum sensing 2011-04-26T05:06:00Z A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. OMP:0000063 mchibucos microbial_phenotype A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. OMP:MCC increased cell circularity 2020-07-22T22:32:02Z OMP:0000064 microbial_phenotype siegele absence of virulence 2011-04-26T05:06:35Z A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host). OMP:0000065 avirulence incompatible interaction mchibucos microbial_phenotype A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host). OMP:MCC abolished virulence 2011-04-26T05:09:24Z A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished. OMP:0000066 mchibucos microbial_phenotype A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished. OMP:MCC presence of motility by swarming 2011-02-02T03:28:43Z A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces. OMP:0000067 adrienne microbial_phenotype A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces. OMP:MCC virulence phenotype 2011-02-02T03:28:59Z A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host). APO:0000048 GO:0009405 OMP:0000068 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne infectious agent microbial_phenotype pathogen pathogenesis GO:0009405 virulence APO:0000048 A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host). OMP:MCC quorum sensing phenotype 2011-02-07T03:47:50Z A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves. GO:0009372 OMP:0000069 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype quorum sensing GO:0009372 A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves. GO:0009372 OMP:MCC cell development phenotype 2011-02-02T03:11:48Z A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition. GO:0048869 OMP:0000070 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype cellular developmental process GO:0048869 A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition. OMP:MCC cell morphology phenotype 2011-02-02T03:15:16Z A microbial phenotype related to the form and structure of a microbial cell. APO:0000050 OMP:0000071 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype cellular morphology APO:0000050 A microbial phenotype related to the form and structure of a microbial cell. OMP:MCC filamentous 2011-02-02T03:31:35Z A cell arrangement phenotype where cells are joined end-to-end in linear chains. OMP:0000072 adrienne microbial_phenotype A cell arrangement phenotype where cells are joined end-to-end in linear chains. OMP:MCC cell shape phenotype 2011-02-02T03:18:02Z A cell morphology phenotype where the trait in question is the shape of a cell. APO:0000051 OMP:0000073 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype cell shape APO:0000051 A cell morphology phenotype where the trait in question is the shape of a cell. OMP:MCC cell size phenotype 2011-02-02T03:18:19Z A cell morphology phenotype where the trait in question is the size of a cell. APO:0000052 OMP:0000074 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype A cell morphology phenotype where the trait in question is the size of a cell. OMP:MCC cell size APO:0000052 coccus 2011-02-02T03:18:29Z A spheroid cell phenotype where a cell is spherical or nearly spherical. OMP:0000075 adrienne microbial_phenotype spherical-shaped A spheroid cell phenotype where a cell is spherical or nearly spherical. ISBN:9780073402406 OMP:MCC rod-shaped cells 2011-02-02T03:18:47Z A cylindrical cell phenotype where an organism has rod-shaped cells. OMP:0000076 adrienne bacillus microbial_phenotype A cylindrical cell phenotype where an organism has rod-shaped cells. ISBN:9780073402406 OMP:MCC vibrio 2011-02-02T03:19:31Z A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral. OMP:0000077 adrienne microbial_phenotype A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral. ISBN:9780073402406 OMP:AEZ flagellum arrangement phenotype 2011-02-02T03:43:16Z A flagellum phenotype where the trait in question is the location of the flagellum on an organism. OMP:0000078 adrienne microbial_phenotype A flagellum phenotype where the trait in question is the location of the flagellum on an organism. OMP:MCC monotrichous 2011-02-02T03:44:18Z A flagellum distribution phenotype where an organism has a single flagellum. OMP:0000079 adrienne microbial_phenotype single flagellum A flagellum distribution phenotype where an organism has a single flagellum. ISBN:9780073402406 amphitrichous 2011-02-02T03:45:34Z A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell. OMP:0000080 adrienne microbial_phenotype A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell. ISBN:9780073402406 OMP:MCC lophotrichous 2011-02-02T03:46:16Z A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell. OMP:0000081 adrienne microbial_phenotype A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell. ISBN:9780073402406 peritrichous flagella 2011-02-02T03:46:44Z A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface. OMP:0000082 adrienne microbial_phenotype A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface. ISBN:9780073402406 OMP:MCC cell projection morphology phenotype 2011-02-02T03:47:44Z A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell. GO:0042995 OMP:0000083 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. adrienne cell appendage phenotype microbial_phenotype A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell. GO:0042995 OMP:MCC cell projection GO:0042995 pilus morphology phenotype 2011-02-02T03:47:57Z A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell. OMP:0000084 adrienne fimbria phenotype microbial_phenotype GO:0009289 fimbria phenotype A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell. ISBN:9780073402406 OMP:MCC cell envelope morphology phenotype 2011-02-02T03:49:03Z A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope. OMP:0000085 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope. OMP:MCC spiral cell shape 2011-02-02T03:19:47Z A cell shape phenotype where a cell is helical or cork-screw shaped. OMP:0000086 adrienne curved rod microbial_phenotype spirillum spirochete vibrio A cell shape phenotype where a cell is helical or cork-screw shaped. OMP:MCC facultative anaerobe 2011-06-06T03:42:26Z A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present. OMP:0000087 facultative aerobe mchibucos microbial_phenotype ISBN:978-0134261928 facultative aerobe A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present. ISBN:9780073402406 OMP:WAM filamentous colony 2011-06-07T12:08:48Z A colony form phenotype characterized by growth of thin individual projections in the colony. OMP:0000088 SNOMEDCT:31153000 mchibucos microbial_phenotype A colony form phenotype characterized by growth of thin individual projections in the colony. OMP:WAM budding phenotype 2011-02-02T03:23:41Z An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism. GO:0007114 OMP:0000089 adrienne microbial_phenotype An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism. OMP:DAS cell budding GO:0007114 lifespan phenotype 2011-02-02T03:24:11Z An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells. OMP:0000090 adrienne microbial_phenotype An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells. OMP:WAM sporulation phenotype 2011-02-02T03:24:24Z A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction. GO:0043934 OMP:0000091 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype sporulation GO:0043934 A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction. OMP:MCC heterocyst formation phenotype 2011-02-02T03:24:43Z A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. GO:0043158 OMP:0000092 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. DOI:10.1046/j.1469-8137.1999.00505.x OMP:MCC heterocyst differentiation GO:0043158 akinete formation phenotype 2011-02-02T03:25:02Z A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell. GO:0034302 OMP:0000093 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes typically are more resistant to dessication and other environmental stresses than vegetative cells. adrienne microbial_phenotype akinete formation GO:0034302 A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell. OMP:MCC doi:10.1046/j.1469-8137.1999.00505.x endospore formation phenotype 2011-02-02T03:25:29Z A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. FAO:0000019 GO:0034301 OMP:0000094 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype spore FAO:0000019 A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. OMP:MCC endospore formation GO:0034301 spore germination phenotype 2011-02-02T03:25:47Z A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). GO:0009847 OMP:0000095 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype spore germination GO:0009847 A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). OMP:MCC myxospore formation phenotype 2011-02-02T03:26:41Z A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria. GO:0034303 OMP:0000096 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne microbial_phenotype A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria. OMP:MCC myxospore formation GO:0034303 absence of chemotaxis 2011-02-02T03:28:13Z A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient. OMP:0000097 adrienne microbial_phenotype A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient. OMP:MCC altered virulence 2011-04-28T02:11:35Z A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control. OMP:0000098 PATO:0002146 compatible interaction mchibucos microbial_phenotype virulence A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control. OMP:MCC hemolysis test 2011-06-07T03:17:22Z A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells. OMP:0000099 mchibucos microbial_phenotype A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells. OMP:WAM colony morphology phenotype 2011-02-02T02:14:39Z A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium. APO:0000060 Adrienne OMP:0000100 colony appearance phenotype microbial_phenotype A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium. ISBN:9780073302089 OMP:WAM colony appearance APO:0000060 microbial communication phenotype 2011-02-07T03:45:44Z A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated. Adrienne OMP:0000101 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated. OMP:JCH colony opacity phenotype 2011-06-07T12:18:14Z A colony morphology phenotype dealing with the degree to which light can pass through a colony. OMP:0000102 mchibucos microbial_phenotype A colony morphology phenotype dealing with the degree to which light can pass through a colony. OMP:WAM colony form phenotype 2011-02-02T02:41:50Z A colony morphology phenotype dealing with the basic shape or form of a colony or colonies. Adrienne OMP:0000103 microbial_phenotype A colony morphology phenotype dealing with the basic shape or form of a colony or colonies. OMP:WAM colony elevation phenotype 2011-02-02T02:42:12Z A colony morphology phenotype dealing with the height or vertical growth of the colony. Adrienne OMP:0000104 microbial_phenotype A colony morphology phenotype dealing with the height or vertical growth of the colony. OMP:WAM aerotolerant anaerobe 2011-06-06T03:43:38Z A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present. OMP:0000105 mchibucos microbial_phenotype A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present. ISBN:9780073402406 OMP:WAM colony sheen phenotype 2011-02-02T02:42:37Z A colony surface phenotype characterized by a soft luster on the surface. Adrienne OMP:0000106 microbial_phenotype A colony surface phenotype characterized by a soft luster on the surface. OMP:JCH colony pigmentation phenotype 2011-02-02T02:43:25Z A colony morphology phenotype related to the color of a colony or colonies. Adrienne OMP:0000107 microbial_phenotype A colony morphology phenotype related to the color of a colony or colonies. OMP:WAM colony optical phenotype 2011-02-02T02:43:46Z A colony morphology phenotype dealing with the interaction of a colony or colonies and light. Adrienne OMP:0000108 microbial_phenotype A colony morphology phenotype dealing with the interaction of a colony or colonies and light. OMP:JCH presence of mucoid colonies 2011-02-07T03:38:08Z A mucoid colony phenotype where the colonies are mucoid. Adrienne OMP:0000109 microbial_phenotype viscous colony texture A mucoid colony phenotype where the colonies are mucoid. ISBN:1555810489 OMP:WAM OMP:WAM viscous colony texture opaque colony 2011-02-02T02:45:02Z A colony opacity phenotype characterized by inability of light to pass through it. Adrienne OMP:0000110 SNOMED:P3-51350 microbial_phenotype A colony opacity phenotype characterized by inability of light to pass through it. OMP:WAM presence of motility by swimming 2011-02-07T03:17:40Z A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium. In Bacteria and Archaea, motility by swimming is typically powered by a flagellum or flagella. In Protists, swimming motility is typically powered by cilia or flagella. OMP:0000111 adrienne microbial_phenotype A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium. OMP:MCC presence of motility by gliding 2011-02-07T03:18:03Z A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface. OMP:0000112 adrienne microbial_phenotype A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface. OMP:MCC presence of motility by twitching 2011-02-07T03:18:13Z A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili. GO:0043107 OMP:0000113 Twitching motility of bacteria typically involves type IV pili. adrienne microbial_phenotype A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili. OMP:MCC PMID:12142488 type IV pilus-dependent motility GO:0043107 translucent colony 2011-02-02T02:45:20Z A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance. Adrienne OMP:0000114 SNOMED:P3-51370 microbial_phenotype semi-translucent A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance. OMP:WAM transparent colony 2011-02-02T02:45:41Z A colony opacity phenotype characterized by a clear appearance. Adrienne OMP:0000115 SNOMED:P3-51360 microbial_phenotype A colony opacity phenotype characterized by a clear appearance. OMP:WAM pigmented colony 2011-02-02T02:46:17Z A colony pigmentation phenotype where colonies are pigmented. Adrienne OMP:0000116 microbial_phenotype A colony pigmentation phenotype where colonies are pigmented. OMP:WAM diplococcus 2011-02-18T02:29:12Z A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane. OMP:0000117 adrienne microbial_phenotype A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane. ISBN:9780073402406 OMP:AEZ streptococcus 2011-02-18T02:31:37Z A cell arrangement phenotype where chains of coccus cells arise from division events in one plane. OMP:0000118 adrienne microbial_phenotype A cell arrangement phenotype where chains of coccus cells arise from division events in one plane. OMP:AEZ tetrad 2011-02-18T02:33:22Z A cell arrangement phenotype where squares of four coccus cells arise from division in two planes. OMP:0000119 adrienne microbial_phenotype micrococcus arrangement A cell arrangement phenotype where squares of four coccus cells arise from division in two planes. OMP:AEZ sarcina 2011-02-18T02:34:40Z A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes. OMP:0000120 adrienne microbial_phenotype A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes. OMP:AEZ staphylococcus 2011-02-18T02:39:34Z A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes. OMP:0000121 adrienne microbial_phenotype A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes. OMP:AEZ streptobacillus 2011-02-18T02:47:10Z A cell arrangement phenotype where bacillis cells are arranged in chains. OMP:0000122 adrienne microbial_phenotype A cell arrangement phenotype where bacillis cells are arranged in chains. OMP:AEZ coccobacillus cell shape 2011-02-18T02:48:21Z A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod). OMP:0000123 adrienne microbial_phenotype A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod). ISBN:9780073402406 OMP:MCC spirillum 2011-02-18T02:51:54Z A spiral cell shape phenotype where a cell forms a rigid spiral. OMP:0000124 adrienne microbial_phenotype A spiral cell shape phenotype where a cell forms a rigid spiral. ISBN:9780073402406 OMP:AEZ spirochete 2011-02-18T02:52:33Z A spiral cell shape phenotype where a cell forms a flexible spiral. OMP:0000125 adrienne microbial_phenotype A spiral cell shape phenotype where a cell forms a flexible spiral. ISBN:9780073402406 OMP:AEZ trichome-forming 2011-02-18T02:55:59Z A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width. OMP:0000126 adrienne microbial_phenotype A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width. OMP:DAS PMID:5318446 sheathed 2011-02-18T02:59:18Z A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath. OMP:0000127 adrienne microbial_phenotype A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath. OMP:MCC stalked cell shape 2011-02-18T02:59:38Z A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol. OMP:0000128 adrienne microbial_phenotype prosthecate bacterium URL:http://en.wikipedia.org/wiki/Prosthecate_bacteria prosthecate bacterium A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol. OMP:MCC PMID:14245437 cuboidal cell shape 2011-02-18T02:59:57Z A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell. OMP:0000129 adrienne microbial_phenotype square A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell. OMP:MCC star-shaped cell shape 2011-02-18T03:00:30Z A cell shape phenotype where a cell has projections that form points. OMP:0000130 adrienne microbial_phenotype A cell shape phenotype where a cell has projections that form points. OMP:MCC lobed cell shape 2011-02-18T03:00:58Z A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes). OMP:0000131 PATO:0001979 adrienne microbial_phenotype A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes). OMP:MCC lobed PATO:0001979 pleomorphic cell shape 2011-02-18T03:01:18Z A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form. OMP:0000132 PATO:0001356 adrienne microbial_phenotype A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form. ISBN:9780073402406 OMP:MCC absence of motility 2011-02-18T03:33:32Z A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another. OMP:0000133 adrienne microbial_phenotype non-motile A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another. OMP:MCC spherical akinete 2011-02-18T03:40:27Z An akinete morphology phenotype where the organism forms a spherical akinete. OMP:0000134 adrienne microbial_phenotype An akinete morphology phenotype where the organism forms a spherical akinete. OMP:JCH akinete envelope attribute 2011-02-18T03:41:16Z An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane. OMP:0000135 adrienne microbial_phenotype An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane. OMP:JCH in vitro nucleoid shape 2011-02-21T04:16:30Z A nucleoid phenotype dealing with shape of the nucleoid region. OMP:0000136 adrienne microbial_phenotype A nucleoid phenotype dealing with shape of the nucleoid region. OMP:WAM non-pigmented colony 2011-02-02T02:46:39Z A colony pigmentation phenotype colonies are non-pigmented. Adrienne OMP:0000137 colorless colony microbial_phenotype A colony pigmentation phenotype colonies are non-pigmented. OMP:WAM altered cell circularity variability 2020-07-22T22:32:45Z Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2). OMP:0000138 microbial_phenotype siegele dull colony sheen 2011-02-02T02:47:21Z A colony form phenotype characterized by a dull luster on the surface. Adrienne OMP:0000139 SNOMED:P3-513150 matte microbial_phenotype rough A colony form phenotype characterized by a dull luster on the surface. OMP:JCH nucleoid spacing 2011-02-21T04:25:41Z A nucleoid phenotype that describes the distribution of within a cell or cells. OMP:0000140 adrienne microbial_phenotype A nucleoid phenotype that describes the distribution of within a cell or cells. OMP:AZ regular nucleoid spacing 2011-02-21T04:26:57Z A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing. OMP:0000141 adrienne microbial_phenotype A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing. OMP:AZ irregular nucleoid spacing 2011-02-21T04:27:22Z A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing. OMP:0000142 adrienne microbial_phenotype A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing. OMP:AZ single nucleoid 2011-02-21T04:27:48Z A nucleoid number phenotype where there is only one nucleoid region in the cell. OMP:0000143 adrienne microbial_phenotype A nucleoid number phenotype where there is only one nucleoid region in the cell. OMP:WAM multiple nucleoids 2011-02-21T04:28:30Z A nucleoid number phenotype where there is more than one nucleoid regions in the cell. OMP:0000144 adrienne microbial_phenotype A nucleoid number phenotype where there is more than one nucleoid regions in the cell. OMP:WAM nucleoid localization 2011-02-21T04:30:32Z A nucleoid phenotype that describes the location of the nucleoid within a cell or cells. OMP:0000145 adrienne microbial_phenotype A nucleoid phenotype that describes the location of the nucleoid within a cell or cells. OMP:JCH midcell nucleoid localization 2011-02-21T04:31:22Z A nucleoid localization phenotype where the nucleoid is localized at the center of the cell. OMP:0000146 adrienne microbial_phenotype A nucleoid localization phenotype where the nucleoid is localized at the center of the cell. OMP:WAM polar nucleoid localization 2011-02-21T04:31:46Z A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell. OMP:0000147 adrienne microbial_phenotype A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell. OMP:WAM quarter cell nucleoid localization 2011-02-21T04:32:04Z A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell. OMP:0000148 adrienne microbial_phenotype A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell. OMP:AZ colony margin phenotype 2011-02-02T02:47:43Z A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification. Adrienne OMP:0000149 microbial_phenotype A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification. OMP:WAM nucleoid phenotype 2011-02-21T04:36:21Z A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined. OMP:0000150 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adrienne genophore microbial_phenotype A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined. OMP:MCC entire margin 2011-02-02T02:47:59Z A colony margin phenotype characterized by smooth growth, with no projections along the edge. Adrienne OMP:0000151 SNOMEDCT:12774002 microbial_phenotype A colony margin phenotype characterized by smooth growth, with no projections along the edge. OMP:WAM doublet nucleoid 2011-02-22T02:27:29Z A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell. OMP:0000152 adrienne dumbbell nucleoid microbial_phenotype OMP:WAM dumbbell nucleoid A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell. OMP:WAM singlet nucleoid 2011-02-22T02:27:58Z A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted. OMP:0000153 adrienne microbial_phenotype A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted. OMP:WAM undulate margin 2011-02-02T02:48:11Z A colony margin phenotype characterized by wavy growth along the colony edge. Adrienne OMP:0000154 SNOMEDCT:48408000 microbial_phenotype A colony margin phenotype characterized by wavy growth along the colony edge. OMP:WAM Bacterial colony morphology, undulate margin SNOMEDCT:48408000 lobate margin 2011-02-02T02:48:33Z A colony margin phenotype characterized by lobed growth along the colony edge. Adrienne OMP:0000155 SNOMEDCT:36580002 microbial_phenotype A colony margin phenotype characterized by lobed growth along the colony edge. OMP:WAM erose margin 2011-02-02T02:48:46Z A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony. Adrienne OMP:0000156 SNOMEDCT:86734000 microbial_phenotype A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony. OMP:WAM filiform margin 2011-02-02T02:49:05Z A colony margin phenotype characterized by thread or filamentous shaped edge. Adrienne OMP:0000157 SNOMEDCT:42844005 filamentous margin microbial_phenotype A colony margin phenotype characterized by thread or filamentous shaped edge. OMP:JCH Bacterial colony morphology, filamentous margin SNOMEDCT:42844005 curled margin 2011-02-02T02:49:30Z A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony. Adrienne OMP:0000158 SNOMEDCT:85764001 microbial_phenotype A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony. OMP:JCH absence of aerotaxis 2011-03-02T02:06:09Z An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2). OMP:0000159 adrienne microbial_phenotype An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2). OMP:MCC flat colony elevation 2011-02-02T02:49:49Z A colony elevation phenotype characterized by no growth above the medium. Adrienne OMP:0000160 SNOMED:P3-51130 microbial_phenotype A colony elevation phenotype characterized by no growth above the medium. OMP:WAM raised colony elevation 2011-02-02T02:50:01Z A colony elevation phenotype characterized by uniform growth above the medium. Adrienne OMP:0000161 SNOMED:P3-51140 microbial_phenotype A colony elevation phenotype characterized by uniform growth above the medium. OMP:WAM convex colony elevation 2011-02-02T02:50:11Z A colony elevation phenotype characterized by sloping up from the edges. Adrienne OMP:0000162 SNOMEDCT:26875006 microbial_phenotype A colony elevation phenotype characterized by sloping up from the edges. OMP:WAM Bacterial colony elevation, convex SNOMEDCT:26875006 pulvinate colony elevation 2011-02-02T02:50:30Z A colony elevation phenotype characterized by sloping steeply from edges and very high in the center. Adrienne OMP:0000163 microbial_phenotype A colony elevation phenotype characterized by sloping steeply from edges and very high in the center. OMP:WAM umbonate colony elevation 2011-02-02T02:50:42Z A colony elevation phenotype characterized by raised growth in the center. Adrienne OMP:0000164 SNOMEDCT:70929009 microbial_phenotype Bacterial colony elevation, umbonate SNOMEDCT:70929009 A colony elevation phenotype characterized by raised growth in the center. OMP:WAM increased colony size 2011-06-07T01:55:00Z A colony size phenotype where colony size is increased relative to a designated control. OMP:0000165 mchibucos microbial_phenotype A colony size phenotype where colony size is increased relative to a designated control. OMP:JCH circular colony 2011-02-02T02:51:18Z A colony form phenotype characterized by growth in a round shape. Adrienne OMP:0000166 SNOMEDCT:64781005 microbial_phenotype A colony form phenotype characterized by growth in a round shape. OMP:WAM irregular colony 2011-02-02T02:51:35Z A colony form phenotype characterized by growth without a defined shape or size. Adrienne OMP:0000167 SNOMEDCT:39696006 microbial_phenotype A colony form phenotype characterized by growth without a defined shape or size. OMP:WAM rhizoid colony 2011-02-02T02:51:57Z A colony form phenotype characterized by the growth of thin, branching projections. Adrienne OMP:0000168 SNOMEDCT:113047000 microbial_phenotype A colony form phenotype characterized by the growth of thin, branching projections. OMP:WAM spindle colony 2011-02-02T02:52:30Z A colony form phenotype characterized by growth being wide in the middle then tapering at both ends. Adrienne OMP:0000169 SNOMEDCT:77324006 microbial_phenotype A colony form phenotype characterized by growth being wide in the middle then tapering at both ends. OMP:JCH decreased cell circularity variability 2020-07-22T22:34:00Z OMP:0000170 microbial_phenotype siegele microaerophile 2011-06-06T03:44:11Z An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%). A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2. OMP:0000171 Optimal oxygen levels for growth of typical microaerophilic bacteria is 2 to 10% O2, and growth is impaired by atmospheric oxygen levels (approx. 21%). mchibucos microbial_phenotype An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%). A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2. ISBN:9780073402406 OMP:WAM response to chemical stimulus phenotype 2011-06-06T04:16:08Z A stress response phenotype dealing with the response to exposure to chemical stimuli. OMP:0000172 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A stress response phenotype dealing with the response to exposure to chemical stimuli. OMP:WAM response to stress phenotype 2011-02-02T03:13:32Z A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). Adrienne OMP:0000173 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). FYPO:0002549 GO:0006950 OMP:WAM growth phenotype 2011-02-02T03:13:59Z A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell. Adrienne GO:0040007 OMP:0000174 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. For phenotypes affecting growth of a population, see OMP:0007167 ! population growth phenotype. microbial_phenotype growth GO:0040007 A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell. GO:0040007 OMP:WAM nanotube phenotype 2011-06-07T02:59:54Z A cell projection phenotype where the structure in question is a tube. OMP:0000175 mchibucos microbial_phenotype A cell projection phenotype where the structure in question is a tube. OMP:DAS biofilm formation phenotype 2011-02-02T03:17:19Z A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation. Adrienne OMP:0000176 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation. GO:0042710 OMP:WAM liquid culture morphology phenotype 2011-02-02T03:20:39Z A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium. APO:0000064 Adrienne OMP:0000177 microbial_phenotype liquid culture appearance APO:0000064 A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium. OMP:WAM flocculation phenotype 2011-02-02T03:21:00Z A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs. APO:0000065 Adrienne OMP:0000178 clumping flocculation microbial_phenotype flocculation APO:0000065 A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs. GO:0000128 ISBN:9780763743031 OMP:WAM colony size phenotype 2011-02-02T03:22:43Z A colony morphology phenotype dealing with the size of the colony. Adrienne OMP:0000179 microbial_phenotype A colony morphology phenotype dealing with the size of the colony. OMP:WAM metabolic phenotype 2011-06-06T03:59:59Z A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolism OMP:0000180 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. GO:0008152 colony with diffusible pigment 2011-06-07T12:18:54Z A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony. OMP:0000181 mchibucos microbial_phenotype A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony. OMP:WAM gas production test 2011-02-07T03:52:30Z A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth. Adrienne OMP:0000182 microbial_phenotype A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth. OMP:JCH anaerobic respiration with sulfate as the terminal acceptor 2011-02-07T03:52:44Z A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor. Adrienne GO:0019420 OMP:0000183 dissimilatory sulfate reduction microbial_phenotype sulfide production ISBN:978-0-07-340240-6 dissimilatory sulfate reduction dissimilatory sulfate reduction GO:0019420 A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor. ISBN:978-0-07-340240-6 OMP:DAS obligate anaerobe 2011-02-02T03:29:34Z A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2). Adrienne OMP:0000184 microbial_phenotype strict anaerobe A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2). ISBN:9780073402406 OMP:WAM obligate aerobe 2011-02-02T03:29:51Z A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth. Adrienne OMP:0000185 microbial_phenotype strict aerobe A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth. ISBN:9780073402406 OMP:WAM increased cell circularity variability 2020-07-22T22:34:00Z OMP:0000186 microbial_phenotype siegele granulation phenotype 2011-06-07T02:22:14Z A liquid culture morphology phenotype where cells group together and form small particles in the medium. OMP:0000187 granulation in liquid mchibucos microbial_phenotype precipitation in liquid culture A liquid culture morphology phenotype where cells group together and form small particles in the medium. ISBN:9780763743031 OMP:WAM gram positive 2011-02-02T03:34:29Z A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol. Adrienne GO:0009275 OMP:0000188 microbial_phenotype Gram-positive-bacterium-type cell wall GO:0009275 A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol. OMP:DAS gram negative 2011-02-02T03:34:45Z A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol. Adrienne GO:0009276 OMP:0000189 microbial_phenotype A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol. OMP:DAS Gram-negative-bacterium-type cell wall GO:0009276 gram variable 2011-02-02T03:34:58Z A gram stain phenotype where a cell or cells give variable results to the gram stain. Adrienne OMP:0000190 microbial_phenotype A gram stain phenotype where a cell or cells give variable results to the gram stain. OMP:DAS gram stain phenotype 2011-02-02T03:35:15Z A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol. Adrienne OMP:0000191 SNOMEDCT:385484003 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol. ISBN:978-0-07-340240-6 ISBN:978-0077292812 OMP:DAS Gram stain SNOMEDCT:385484003 chemical production phenotype 2011-02-03T11:24:08Z A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals. Adrienne OMP:0000192 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals. OMP:JCH altered cell aspect ratio 2020-07-22T22:35:03Z An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control. OMP:0000193 microbial_phenotype siegele An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control. OMP:das catalase positive 2011-06-06T04:28:49Z A catalase test phenotype where an organism exhibits catalase activity. OMP:0000194 mchibucos microbial_phenotype A catalase test phenotype where an organism exhibits catalase activity. OMP:JCH decreased catalase activity 2011-06-06T04:29:20Z An altered catalase activity phenotype where catalase activity is decreased relative to a designated control. OMP:0000195 mchibucos microbial_phenotype An altered catalase activity phenotype where catalase activity is decreased relative to a designated control. OMP:JCH increased catalase activity 2011-06-06T04:29:39Z An altered catalase activity phenotype where catalase activity is increased relative to a designated control. OMP:0000196 mchibucos microbial_phenotype positive regulation of catalase activity GO:1902553 positive regulation of catalase activity An altered catalase activity phenotype where catalase activity is increased relative to a designated control. OMP:JCH microbe-host interaction phenotype 2011-02-03T11:25:01Z A microbial phenotype related to the interactions between a microbe and its host(s). APO:0000287 Adrienne GO:0051704 OMP:0000197 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A microbial phenotype related to the interactions between a microbe and its host(s). OMP:WAM interaction with host/environment APO:0000287 multi-organism process GO:0051704 catalase negative 2011-06-06T04:30:12Z A catalase test phenotype where an organism doesn't exhibit catalase activity. OMP:0000198 mchibucos microbial_phenotype A catalase test phenotype where an organism doesn't exhibit catalase activity. OMP:JCH acid-fast staining phenotype 2011-02-03T11:38:46Z A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin. Adrienne OMP:0000199 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin. ISBN:978-0-07-729281-1 OMP:DAS colony with non-diffusible pigment 2011-06-07T12:19:32Z A colony pigmentation phenotype characterized by pigmentation only in the colony. OMP:0000200 mchibucos microbial_phenotype A colony pigmentation phenotype characterized by pigmentation only in the colony. OMP:WAM nanotube mediated communication 2011-03-02T01:41:52Z A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube. Adrienne OMP:0000201 microbial_phenotype nanotubule mediated communication A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube. OMP:WAM PMID:21335240 outer membrane vesicles phenotype 2011-03-02T01:43:12Z A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles. Adrienne OMP:0000202 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles. OMP:JCH PMID:20825345 capsule phenotype 2011-06-07T09:44:51Z A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope. APO:0000331 OMP:0000203 glycocalyx mchibucos microbial_phenotype slime layer capsule formation APO:0000331 A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope. ISBN:9780073402406 OMP:DAS presence of capsule 2011-06-07T09:45:20Z A capsule phenotype where a cell or cells have a capsule. OMP:0000204 When present, the capsule layer lies outside the cell wall and/or outer membrane. glycocalyx mchibucos microbial_phenotype slime layer OMP:DAS slime layer OMP:DAS glycocalyx A capsule phenotype where a cell or cells have a capsule. OMP:DAS forms single species biofilm 2011-06-07T02:26:30Z A biofilm phenotype where the biofilm is formed by a single species. OMP:0000205 mchibucos microbial_phenotype A biofilm phenotype where the biofilm is formed by a single species. OMP:WAM altered hemolysis test result 2011-06-07T03:17:46Z A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control. OMP:0000206 mchibucos microbial_phenotype A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control. OMP:WAM serotype phenotype 2011-03-02T02:16:33Z A microbial phenotype that is distinguished by the presence a specific surface antigen. Adrienne OMP:0000207 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. antigenic typing phenotype microbial_phenotype serological test phenotype serovar A microbial phenotype that is distinguished by the presence a specific surface antigen. OMP:MCC absence of hemolysis 2011-06-07T03:18:33Z A hemolysis test phenotype where a cell or cells does not cause hemolysis. OMP:0000208 mchibucos microbial_phenotype A hemolysis test phenotype where a cell or cells does not cause hemolysis. OMP:WAM fluorescent colony 2011-06-07T12:20:31Z A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence. OMP:0000209 mchibucos microbial_phenotype A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence. OMP:WAM colony surface phenotype 2011-06-07T12:31:24Z A colony morphology phenotype that describes the appearance of the surface of a colony or colonies. OMP:0000210 mchibucos microbial_phenotype A colony morphology phenotype that describes the appearance of the surface of a colony or colonies. OMP:WAM absence of capsule 2011-06-07T09:49:20Z A capsule phenotype where a cell or cells lack capsule. OMP:0000211 mchibucos microbial_phenotype A capsule phenotype where a cell or cells lack capsule. OMP:DAS smooth colony surface 2011-06-07T12:32:12Z A colony surface phenotype where colonies have a shiny glistening surface. OMP:0000212 SNOMEDCT:90926009 mchibucos microbial_phenotype Bacterial colony surface, smooth SNOMEDCT:90926009 A colony surface phenotype where colonies have a shiny glistening surface. ISBN:1555810489 OMP:WAM increased number of flagella 2011-06-07T09:53:17Z An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control. OMP:0000213 mchibucos microbial_phenotype An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control. OMP:DAS cell staining phenotype 2011-02-03T01:33:37Z A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification. APO:0000061 Adrienne OMP:0000214 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification. OMP:DAS colony color APO:0000061 decreased number of flagella 2011-06-07T09:54:51Z An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control. OMP:0000215 mchibucos microbial_phenotype An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control. OMP:DAS aerobic respiration phenotype 2011-02-07T03:53:18Z A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor. Adrienne OMP:0000216 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor. ISBN:978-0-07-340240-6 OMP:DAS increased hemolysis 2011-06-07T03:19:00Z An altered hemolysis phenotype where hemolysis is increased relative to a designated control. OMP:0000217 mchibucos microbial_phenotype An altered hemolysis phenotype where hemolysis is increased relative to a designated control. OMP:WAM catalase test phenotype 2011-02-03T04:43:28Z A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water. Adrienne GO:0004096 OMP:0000218 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O [EC:1.11.1.6]. microbial_phenotype catalase activity GO:0004096 A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water. ISBN:9780895828309 OMP:JCH decarboxylase test phenotype 2011-02-03T04:43:53Z A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine. Adrienne OMP:0000219 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine. ISBN:9780895828309 OMP:JCH oxidase test phenotype 2011-02-03T04:44:11Z A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products. Adrienne OMP:0000220 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products. ISBN:9780895828309 OMP:JCH enzymatic activity phenotype 2011-02-03T04:44:39Z A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes. Adrienne FYPO:0000654 GO:0003824 OMP:0000221 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. catalytic activity microbial_phenotype A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes. ISBN:0198506732 OMP:JCH catalytic activity GO:0003824 catalytic activity phenotype FYPO:0000654 urease test phenotype 2011-02-03T04:45:37Z A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide. Adrienne GO:0009039 OMP:0000222 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide. ISBN:9780895828309 OMP:JCH urease activity GO:0009039 decreased cell aspect ratio 2020-07-22T22:36:00Z An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control. OMP:0000223 microbial_phenotype siegele An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control. OMP:das energy metabolism phenotype 2011-06-06T04:53:09Z A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers. OMP:0000224 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bioenergetics mchibucos microbial_phenotype A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers. OMP:JCH carbon dioxide production 2011-02-07T03:53:37Z A chemical production phenotype where carbon dioxide is produced. Adrienne OMP:0000225 microbial_phenotype A chemical production phenotype where carbon dioxide is produced. OMP:JCH increased cell aspect ratio 2020-07-22T22:36:00Z An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control. OMP:0000226 microbial_phenotype siegele An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control. OMP:das altered cell aspect ratio variability 2020-07-22T22:37:16Z OMP:0000227 microbial_phenotype siegele rough colony surface 2011-06-07T12:32:41Z A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface. OMP:0000228 SNOMEDCT:77092005 mchibucos microbial_phenotype Bacterial colony surface, rough SNOMEDCT:77092005 A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface. ISBN:1555810489 OMP:WAM colony consistency phenotype 2011-06-07T12:34:58Z A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle. OMP:0000229 colony texture mchibucos microbial_phenotype A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle. ISBN:1555810489 OMP:WAM rugose colony surface 2011-06-07T12:35:30Z A colony surface phenotype that is characterized by a surface that is wrinkled. OMP:0000230 mchibucos microbial_phenotype wrinkled colony surface A colony surface phenotype that is characterized by a surface that is wrinkled. OMP:JCH growth into medium 2011-06-07T12:38:26Z A colony elevation phenotype characterized by growth into the medium not above it. OMP:0000231 mchibucos microbial_phenotype A colony elevation phenotype characterized by growth into the medium not above it. OMP:WAM iridescent colony 2011-06-07T12:39:13Z A colony opacity phenotype characterized by varying colors being observed in reflected light. OMP:0000232 mchibucos microbial_phenotype A colony opacity phenotype characterized by varying colors being observed in reflected light. OMP:WAM decreased cell aspect ratio variability 2020-07-22T22:38:22Z OMP:0000233 microbial_phenotype siegele butyrous colony consistency 2011-06-07T12:41:24Z A colony consistency phenotype where a colony or colonies have a butter-like consistency. OMP:0000234 SNOMEDCT:25778006 buttery colony consistency mchibucos microbial_phenotype A colony consistency phenotype where a colony or colonies have a butter-like consistency. ISBN:1555810489 OMP:WAM Bacterial colony consistency, butyrous SNOMEDCT:25778006 increased cell aspect ratio variability 2020-07-22T22:38:22Z OMP:0000235 microbial_phenotype siegele dry colony consistency 2011-06-07T12:42:40Z A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency. OMP:0000236 SNOMEDCT:87916001 friable colony mchibucos microbial_phenotype Bacterial colony consistency, friable SNOMEDCT:87916001 A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency. ISBN:1555810489 OMP:WAM colony odor phenotype 2011-06-07T12:45:12Z A morphology phenotype dealing with the smell a colony produces. OMP:0000237 mchibucos microbial_phenotype A morphology phenotype dealing with the smell a colony produces. OMP:WAM crateriform colony elevation 2011-06-07T01:11:04Z A colony elevation phenotype characterized by crater like growth. OMP:0000238 mchibucos microbial_phenotype A colony elevation phenotype characterized by crater like growth. OMP:WAM plicate colony surface 2011-06-07T01:11:50Z A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated. OMP:0000239 mchibucos microbial_phenotype A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated. OMP:JCH punctiform colony 2011-06-07T01:50:03Z A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm. OMP:0000240 SNOMEDCT:55699002 mchibucos microbial_phenotype A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm. OMP:WAM decreased colony size 2011-06-07T01:55:22Z A colony size phenotype where colony size is decreased relative to a designated control. OMP:0000241 mchibucos microbial_phenotype A colony size phenotype where colony size is decreased relative to a designated control. OMP:JCH concentrically ringed surface colony 2011-06-07T01:58:00Z A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis. OMP:0000242 concentric colony surface texture mchibucos microbial_phenotype A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis. OMP:JCH sectored colony 2011-06-07T02:04:20Z A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate. OMP:0000243 mchibucos microbial_phenotype A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate. OMP:WAM papillated colony 2011-06-07T02:06:19Z A colony form phenotype characterized by growth of small, round or cone-shaped protuberances. OMP:0000244 colony papillation mchibucos microbial_phenotype A colony form phenotype characterized by growth of small, round or cone-shaped protuberances. OMP:JCH participates in multi-species biofilm 2011-06-07T02:27:00Z A biofilm phenotype where the formation involves two or more species. OMP:0000245 mchibucos microbial_phenotype A biofilm phenotype where the formation involves two or more species. OMP:WAM presence of nanotubes 2011-06-07T03:00:25Z A nanotube phenotype where a cell or cells have the ability to produce nanotubes. OMP:0000246 mchibucos microbial_phenotype A nanotube phenotype where a cell or cells have the ability to produce nanotubes. OMP:JCH absence of nanotubes 2011-06-07T03:01:32Z A nanotube phenotype where a cell or cells lack the ability to produce nanotubes. OMP:0000247 mchibucos microbial_phenotype A nanotube phenotype where a cell or cells lack the ability to produce nanotubes. OMP:JCH biofilm architecture phenotype 2011-06-07T03:05:56Z A biofilm phenotype dealing with the structural formation of the biofilm. OMP:0000248 mchibucos microbial_phenotype A biofilm phenotype dealing with the structural formation of the biofilm. OMP:WAM decreased hemolysis 2011-06-07T03:19:25Z An altered hemolysis phenotype where hemolysis is decreased relative to a designated control. OMP:0000249 mchibucos microbial_phenotype An altered hemolysis phenotype where hemolysis is decreased relative to a designated control. OMP:WAM altered cell division 2020-07-22T22:55:26Z A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control. OMP:0000250 abnormal cell division microbial_phenotype siegele A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control. OMP:das FYPO:0000186 abnormal cell division altered cell division ratio variability 2020-07-22T22:58:18Z OMP:0000251 microbial_phenotype siegele metabolite accumulation 2011-07-21T12:51:15Z A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism. OMP:0000252 mchibucos microbial_phenotype A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism. OMP:JCH gene expression phenotype 2011-07-21T01:03:06Z A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation. FYPO:0000142 GO:0010467 OMP:0000253 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation. ISBN:9781615835409 OMP:WAM gene expression GO:0010467 gene expression phenotype FYPO:0000142 constitutive transcription 2011-07-21T01:05:42Z An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively. OMP:0000254 constitutive gene expression mchibucos microbial_phenotype An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively. OMP:WAM plating morphology phenotype 2011-07-21T01:34:48Z A growth phenotype related to the morphology of colonies on solid medium. OMP:0000255 This term was made obsolete because it is redundant with OMP:0000100 ! colony morphology phenotype. mchibucos microbial_phenotype true A growth phenotype related to the morphology of colonies on solid medium. OMP:WAM MacConkey agar phenotype 2011-07-21T01:35:25Z A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium. ** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself. OMP:0000256 This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself. mchibucos microbial_phenotype true A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium. ** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself. OMP:AZ decreased cell division ratio variability 2020-07-22T23:00:48Z OMP:0000257 microbial_phenotype siegele red colony on MacConkey agar 2011-07-21T01:38:10Z A colony morphology phenotype where cells form a red colony on MacConkey agar medium. OMP:0000258 This term was made obsolete because 'red colony on MacConkey agar' was determined to be evidence for a phenotype, i.e. utilization of a particular sugar, rather than the phenotype itself. mchibucos microbial_phenotype true A colony morphology phenotype where cells form a red colony on MacConkey agar medium. OMP:AZ increased cell division ratio variability 2020-07-22T23:00:48Z OMP:0000259 microbial_phenotype siegele altered nucleoid area 2020-07-22T23:02:57Z OMP:0000260 microbial_phenotype siegele decreased nucleoid area 2020-07-22T23:04:02Z OMP:0000261 microbial_phenotype siegele increased nucleoid area 2020-07-22T23:04:02Z OMP:0000262 microbial_phenotype siegele altered nucleoid area variability 2020-07-22T23:05:16Z OMP:0000263 microbial_phenotype siegele decreased nucleoid area variability 2020-07-22T23:06:26Z OMP:0000264 microbial_phenotype siegele increased nucleoid area variability 2020-07-22T23:06:26Z OMP:0000265 microbial_phenotype siegele altered cell population growth rate 2020-07-22T23:15:57Z OMP:0000266 microbial_phenotype siegele increased gene expression 2011-07-21T02:01:35Z An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control. OMP:0000267 mchibucos microbial_phenotype An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control. OMP:WAM decreased gene expression 2011-07-21T02:02:26Z An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control. OMP:0000268 mchibucos microbial_phenotype An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control. OMP:WAM protein activity phenotype 2011-07-21T02:05:51Z A microbial phenotype related to the enzymatic or other activity of a protein. OMP:0000269 This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. During OMP call on 2016-01-27 we decided to delete the term OMP:0000269 ! protein activity phenotype because when observing a phenotype we don't know what kind of molecule is doing something, just that a particular activity is absent, present, or altered. mchibucos microbial_phenotype true A microbial phenotype related to the enzymatic or other activity of a protein. APO:0000022 OMP:WAM decreased cell population growth rate 2020-07-22T23:16:35Z OMP:0000270 microbial_phenotype siegele increased cell population growth rate 2020-07-22T23:16:35Z OMP:0000271 microbial_phenotype siegele cell morphology variability 2020-07-23T10:45:45Z OMP:0000272 microbial_phenotype siegele altered cell perimeter length 2020-07-23T11:13:40Z OMP:0000273 microbial_phenotype siegele antimicrobial agent resistance phenotype 2011-07-21T02:21:21Z A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe. CHEBI:33281 OMP:0000274 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. antibiotic resistance phenotype antibiotic sensitivity phenotype antifungal resistance phenotype antimetabolite resistance phenotype antimicrobial compound sensitivity phenotype antiviral resistance phenotype mchibucos microbial_phenotype antimicrobial agent CHEBI:33281 A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe. CHEBI:33281 OMP:MCC decreased cell perimeter 2020-07-23T11:14:11Z OMP:0000275 microbial_phenotype siegele increased cell perimeter 2020-07-23T11:14:11Z OMP:0000276 microbial_phenotype siegele altered cell perimeter length variability 2020-07-23T11:14:34Z OMP:0000277 microbial_phenotype siegele decreased cell perimeter length variability 2020-07-23T11:15:25Z OMP:0000278 microbial_phenotype siegele increased cell perimeter length variability 2020-07-23T11:15:25Z OMP:0000279 microbial_phenotype siegele increased cell length 2011-07-21T02:37:15Z An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control. FYPO:0000017 OMP:0000280 The mukB mutant appear to have elongated cell length. This is different from cell filamentation. PMID:1989883. mchibucos microbial_phenotype elongated cell FYPO:0000017 An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control. OMP:DAS altered cell population phenotype 2020-07-23T11:38:45Z OMP:0000281 microbial_phenotype siegele decreased population growth rate 2011-07-21T02:43:01Z An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control. OMP:0000282 decreased growth rate increased doubling time increased generation time mchibucos microbial_phenotype An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control. OMP:DAS increased population growth rate 2011-07-21T02:43:22Z An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control. OMP:0000283 decreased doubling time decreased generation time increased growth rate mchibucos microbial_phenotype An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control. OMP:DAS altered cell population growth yield 2020-07-23T12:28:35Z OMP:0000284 microbial_phenotype siegele decreased cell population growth yield 2020-07-23T12:29:32Z OMP:0000285 microbial_phenotype siegele increased cell population growth yield 2020-07-23T12:29:32Z OMP:0000286 microbial_phenotype siegele altered fraction of non-constricted cells 2020-07-23T12:46:03Z OMP:0000287 microbial_phenotype population growth phenotype siegele decreased fraction of non-constricted cells 2020-07-23T12:47:02Z OMP:0000288 microbial_phenotype siegele increased number of anucleoid cells 2011-07-21T04:07:44Z An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control. In Escherichia coli mutations in the muk or par genes result in an increased number of anucleoid cells. OMP:0000289 mchibucos microbial_phenotype An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control. OMP:DAS genetic material phenotype 2011-07-21T04:24:02Z A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information. OMP:0000290 RNA This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. double stranded DNA mchibucos microbial_phenotype single stranded DNA ISBN:9780198529170 RNA A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information. ISBN:9780198529170 OMP:WAM ISBN:9780198529170 double stranded DNA ISBN:9780198529170 single stranded DNA genophore phenotype 2011-07-21T04:25:09Z A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes. OMP:0000291 This term was obsoleted because it is rarely used. Instead, genophore phenotype is listed as a synonym of nucleoid phenotype. mchibucos microbial_phenotype true A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes. ISBN:9780195307610 ISBN:9781613441138 OMP:DAS increased fraction of non-constricted cells 2020-07-23T12:47:02Z OMP:0000292 microbial_phenotype siegele altered fraction of cells with one nucleoid 2020-07-23T12:50:06Z OMP:0000293 microbial_phenotype siegele DNA supercoiling phenotype 2011-07-21T04:46:29Z A genetic material phenotype related to supercoiling of a double-stranded DNA molecule. OMP:0000294 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A genetic material phenotype related to supercoiling of a double-stranded DNA molecule. OMP:DAS presence of negative supercoiling 2011-07-21T04:47:38Z A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix. OMP:0000295 mchibucos microbial_phenotype underwound DNA A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix. ISBN:9781613441138 presence of positive supercoiling 2011-07-21T04:48:22Z A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix. OMP:0000296 mchibucos microbial_phenotype overwound DNA A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix. ISBN:9781613441138 decreased fraction of cells with one nucleoid 2020-07-23T12:50:57Z OMP:0000297 microbial_phenotype siegele increased fraction of cells with one nucleoid 2020-07-23T12:50:57Z OMP:0000298 microbial_phenotype siegele galactose-1-phosphate uridyl transferase activity 2011-07-21T05:12:43Z An enzymatic activity phenotype where galactose-1-phosphate uridyl transferase activity is present. OMP:0000299 This term was obsoleted in response to the decision to not have terms for individual enzyme activities unless those activities are commonly used for identification or classification. mchibucos microbial_phenotype true altered fraction of cells with two nucleoids 2020-07-23T12:52:56Z OMP:0000300 microbial_phenotype siegele decreased fraction of cells with two nucleoids 2020-07-23T12:53:45Z OMP:0000301 microbial_phenotype siegele increased fraction of cells with two nucleoids 2020-07-23T12:53:45Z OMP:0000302 microbial_phenotype siegele altered correlation between nucleoid and cell constriction during cell division 2020-07-23T14:15:02Z OMP:0000303 microbial_phenotype siegele increased substrate binding 2011-07-21T05:18:58Z A substrate binding phenotype where a protein has increased affinity for a substrate. OMP:0000304 This term was obsoleted in response to the decision that Kd measurements are too granular a phenotype for OMP, at least at this time. The issue can be reconsidered if a need for such terms arises in the future. mchibucos microbial_phenotype true decreased correlation between nucleoid and cell constriction during cell division 2020-07-23T14:16:06Z OMP:0000305 microbial_phenotype siegele macromolecular biosynthesis phenotype 2011-07-21T05:44:45Z A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. OMP:0000306 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GO:0009059 OMP:WAM DNA replication phenotype 2011-07-21T05:45:47Z A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle. GO:0044786 OMP:0000307 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype cell cycle DNA replication GO:0044786 A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle. OMP:WAM over-initiation of DNA replication 2011-07-21T05:46:05Z A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control. OMP:0000308 mchibucos microbial_phenotype A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control. OMP:WAM biosynthetic phenotype 2011-07-21T05:47:06Z A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. Biosynthesis OMP:0000309 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. GO:0009058 small molecule biosynthesis phenotype 2011-07-21T05:49:51Z A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. OMP:0000310 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. OMP:JCH amino acid biosynthesis phenotype 2011-07-21T05:50:25Z A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur. OMP:0000311 mchibucos microbial_phenotype A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur. OMP:JCH locomotion phenotype 2012-04-05T11:43:53Z A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. GO:0040011 OMP:0000312 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. GO:0040011 OMP:MCC locomotion GO:0040011 increased correlation between nucleoid and cell constriction during cell division 2020-07-23T14:16:06Z OMP:0000313 microbial_phenotype siegele altered degree of nucleoid constriction at the onset of cell constriction 2020-07-23T14:18:50Z OMP:0000314 This is a population average. microbial_phenotype siegele decreased degree of nucleoid constriction at the onset of cell constriction 2020-07-23T14:19:22Z OMP:0000315 microbial_phenotype siegele increased degree of nucleoid constriction at the onset of cell constriction 2020-07-23T14:19:22Z OMP:0000316 microbial_phenotype siegele cell diameter phenotype 2020-11-18T10:05:19Z OMP:0000317 microbial_phenotype siegele presence of cell length variability 2020-07-26T17:23:35Z OMP:0000318 microbial_phenotype siegele cell area phenotype 2020-11-26T13:14:47Z OMP:0000319 microbial_phenotype siegele presence of cell diameter variability 2020-07-26T17:25:52Z OMP:0000320 microbial_phenotype siegele macrolide resistance phenotype 2012-11-02T01:51:04Z An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties. CHEBI:25105 FK506 OMP:0000321 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. amphotericin B resistance phenotype azithromycin resistance phenotype bafilomycin A1 resistance phenotype brasilinolide A resistance phenotype brefeldin A resistance phenotype carvomycin A resistance phenotype clarithromycin resistance phenotype dirithromycin resistance phenotype erythromycin resistance phenotype josamycin resistance phenotype latrunculin B resistance phenotype macrolide sensitivity phenotype mchibucos microbial_phenotype polyketide resistance phenotype rapamycin resistance phenotype roxithromycin resistance phenotype spiramycin resistance phenotype telithromycin resistance phenotype troleandomycin resistance phenotype CHEBI:26188 polyketide resistance phenotype CHEBI:2682 amphotericin B resistance phenotype CHEBi:3732 clarithromycin resistance phenotype CHEBI:48080 brefeldin A resistance phenotype CHEBI:2955 azithromycin resistance phenotype CHEBI:49703 latrunculin B resistance phenotype An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties. CHEBI:25106 OMP:MCC CHEBI:9168 rapamycin resistance phenotype CHEBI:474014 dirithromycin resistance phenotype CHEBI:65514 brasilinolide A resistance phenotype CHEBI:48844 roxithromycin resistance phenotype CHEBI:31739 josamycin resistance phenotype macrolide antibiotic CHEBI:25105 CHEBI:22689 bafilomycin A1 resistance phenotype CHEBI:25105 erythromycin resistance phenotype cell length phenotype 2020-11-26T13:14:47Z OMP:0000322 microbial_phenotype siegele presence of cell area variability 2020-07-26T17:35:24Z OMP:0000323 microbial_phenotype siegele cell perimeter length phenotype 2020-11-26T13:14:47Z OMP:0000324 microbial_phenotype siegele presence of cell volume variability 2020-07-26T17:44:34Z OMP:0000325 microbial_phenotype siegele cell surface area phenotype 2020-11-26T13:14:47Z OMP:0000326 microbial_phenotype siegele presence of cell surface area variability 2020-07-26T17:50:29Z OMP:0000327 microbial_phenotype siegele cell volume phenotype 2020-11-26T13:14:47Z OMP:0000328 microbial_phenotype siegele presence of cell perimeter length variability 2020-07-26T19:07:06Z OMP:0000329 microbial_phenotype siegele cell surface area-to-volume ratio phenotype 2020-11-26T13:14:47Z OMP:0000330 microbial_phenotype siegele aminopyrimidine resistance phenotype 2012-11-02T02:02:58Z 5-flucytosine resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds. OMP:0000331 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. aminopyrimidine sensitivity phenotype antifolate resistance phenotype diaveridine resistance phenotype iclaprim resistance phenotype mchibucos microbial_phenotype piritrexim resistance phenotype pyrimethamine resistance phenotype trimethoprim resistance phenotype trimetrexate resistance phenotype CHEBI:73913 antifolate resistance phenotype CHEBI:8673 pyrimethamine resistance phenotype 5-flucytosine resistance phenotype CHEBI:5100 CHEBI:123115 diaveridine resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds. CHEBI:38338 OMP:DAS CID:5583 trimetrexate resistance phenotype CHEBI:131724 iclaprim resistance phenotype CHEBI:45924 trimethoprim resistance phenotype presence of cell surface area-to-volume ratio variability 2020-07-26T19:11:25Z OMP:0000332 microbial_phenotype siegele cell circularity phenotype 2020-11-27T16:31:01Z 4 pi area/(perimeter)^2 or 2 pi area/(perimeter)^2? defined differently in two places in paper OMP:0000333 microbial_phenotype siegele increased resistance to aminopyrimidine 2012-11-02T02:04:38Z An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control. OMP:0000334 decreased sensitivity to antifolates mchibucos microbial_phenotype An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control. OMP:DAS decreased resistance to aminopyrimidine 2012-11-02T02:04:58Z An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control. OMP:0000335 increased sensitivity to aminopyrimidine mchibucos microbial_phenotype An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control. OMP:DAS beta-lactam resistance phenotype 2012-11-02T02:06:13Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure. CHEBI:27933 OMP:0000336 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. amoxicillin resistance phenotype ampicillin resistance phenotype aztreonam resistance phenotype beta-lactam sensitivity phenotype carbapenams resistance phenotype carbenicillin resistance phenotype cefaclor resistance phenotype cefoxitin resistance phenotype cefsulodin resistance phenotype ceftazidime resistance phenotype cephalosporins resistance phenotype cephaloxporin resistance phenotype cephamycin resistance phenotype mchibucos mecillinam resistance phenotype microbial_phenotype monobactams resistance phenotype oxacillin resistance phenotype penicillin resistance phenotype CHEBI:2676 amoxicillin resistance phenotype CHEBI:55429 cephamycin resistance phenotype CHEBI:209807 cefoxitin resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure. CHEBI:35627 OMP:MCC CHEBI:7809 oxacillin resistance phenotype CHEBI:3508 ceftazidime resistance phenotype CHEBI:3507 cefsulodin resistance phenotype beta-lactam antibiotic CHEBI:27933 CHEBI:64510 carbapenams resistance phenotype CHEBI:161680 aztreonam resistance phenotype CHEBI:28971 ampicillin resistance phenotype CHEBI:51208 mecillinam resistance phenotype CHEBI:51356 penicillin resistance phenotype CHEBI:3478 cefaclor resistance phenotype CHEBI:50695 monobactams resistance phenotype CHEBI:3393 carbenicillin resistance phenotype presence of cell circularity variability 2020-07-26T19:23:30Z OMP:0000337 microbial_phenotype siegele cell aspect ratio phenotype 2020-11-27T19:14:47Z OMP:0000338 cell aspect ratio (diameter/length) microbial_phenotype siegele presence of cell aspect ratio variability 2020-07-26T19:54:28Z OMP:0000339 microbial_phenotype siegele presence of cell division ratio variability 2020-07-26T19:58:18Z OMP:0000340 microbial_phenotype siegele cell shape variability phenotype 2020-11-27T19:18:22Z A cell population phenotype where the trait is variability in cell shape within a microbial cell population. OMP:0000341 microbial_phenotype siegele A cell population phenotype where the trait is variability in cell shape within a microbial cell population. OMP:das presence of nucleoid area variability 2020-07-27T16:05:18Z OMP:0000342 microbial_phenotype siegele altered cell shape variability phenotype 2020-11-27T19:21:14Z A cell population phenotype where variability in cell shape is altered relative to a designated control. OMP:0000343 microbial_phenotype siegele A cell population phenotype where variability in cell shape is altered relative to a designated control. OMP:das nucleoid area phenotype 2020-11-27T19:47:09Z OMP:0000344 microbial_phenotype siegele cell population growth yield phenotype 2020-11-27T20:14:46Z OMP:0000345 microbial_phenotype siegele nucleoid constriction during cell division phenotype 2020-11-29T12:13:41Z OMP:0000346 microbial_phenotype siegele altered nucleoid constriction during cell division 2020-11-29T12:22:10Z OMP:0000347 This is a cell population average. microbial_phenotype siegele correlation between nucleoid and cell constriction phenotype 2020-11-29T12:40:18Z OMP:0000348 microbial_phenotype siegele cell division during cell population growth phenotype 2020-11-29T13:03:32Z OMP:0000349 microbial_phenotype siegele altered cell division during cell population growth 2020-11-29T13:09:01Z OMP:0000350 microbial_phenotype population growth phenotype siegele altered nucleoid number phenotype 2020-11-29T13:20:35Z OMP:0000351 microbial_phenotype siegele timing of cell constriction phenotype 2020-11-29T13:54:26Z OMP:0000352 microbial_phenotype siegele timing of nucleoid separation phenotype 2020-11-29T13:55:15Z OMP:0000353 microbial_phenotype siegele altered timing of cell constriction 2020-11-29T14:02:10Z OMP:0000354 microbial_phenotype siegele altered timing of nucleoid separation 2020-11-29T14:03:05Z OMP:0000355 microbial_phenotype siegele decreased relative timing of cell constriction 2020-11-29T14:13:36Z OMP:0000356 microbial_phenotype siegele increased relative timing of cell constriction 2020-11-29T14:13:36Z OMP:0000357 microbial_phenotype siegele cell length variability phenotype 2020-11-29T14:19:27Z OMP:0000358 microbial_phenotype siegele cell diameter variability phenotype 2020-11-29T14:20:53Z OMP:0000359 microbial_phenotype siegele cell area variability phenotype 2020-11-29T14:21:45Z OMP:0000360 microbial_phenotype siegele cell volume variability phenotype 2020-11-29T14:22:39Z OMP:0000361 microbial_phenotype siegele cell surface area variability phenotype 2020-11-29T14:24:11Z OMP:0000362 microbial_phenotype siegele cell perimeter length variability phenotype 2020-11-29T14:24:52Z OMP:0000363 microbial_phenotype siegele cell surface area-to-volume ratio variability phenotype 2020-11-29T14:25:30Z OMP:0000364 microbial_phenotype siegele cell circularity variability phenotype 2020-11-29T14:26:57Z OMP:0000365 microbial_phenotype siegele cell aspect ratio variability phenotype 2020-11-29T14:27:30Z OMP:0000366 microbial_phenotype siegele nucleoid area variability phenotype 2020-11-29T14:30:57Z OMP:0000367 microbial_phenotype siegele cell division ratio variability phenotype 2020-11-29T14:33:05Z OMP:0000368 microbial_phenotype siegele internalization by macrophage phenotype 2020-12-01T21:00:29Z OMP:0000369 microbial_phenotype siegele presence of internalization by macrophage 2020-12-01T21:06:40Z OMP:0000370 microbial_phenotype siegele absence of internalization by macrophage 2020-12-01T21:06:40Z OMP:0000371 microbial_phenotype siegele altered internalization by macrophage 2020-12-01T21:06:40Z OMP:0000372 microbial_phenotype siegele increased internalization by macrophage 2020-12-01T21:06:40Z OMP:0000373 microbial_phenotype siegele decreased internalization by macrophage 2020-12-01T21:06:40Z OMP:0000374 microbial_phenotype siegele abolished internalization by macrophage 2020-12-01T21:06:40Z OMP:0000375 microbial_phenotype siegele acid tolerance response phenotype 2020-12-27T00:51:04Z A response to stress phenotype related to how exposure of a microbial cell or cells to a small decrease in pH affects OMP:0000376 microbial_phenotype siegele absence of acid tolerance response 2020-12-27T00:52:03Z OMP:0000377 microbial_phenotype siegele altered acid tolerance response 2020-12-27T00:52:03Z OMP:0000378 microbial_phenotype siegele presence of acid tolerance response 2020-12-27T00:52:03Z OMP:0000379 microbial_phenotype siegele decreased acid tolerance response 2020-12-27T00:53:04Z OMP:0000380 microbial_phenotype siegele increased acid tolerance response 2020-12-27T00:53:04Z OMP:0000381 microbial_phenotype siegele abolished acid tolerance response 2020-12-27T00:53:11Z OMP:0000382 microbial_phenotype siegele cell-cell self recognition phenotype 2021-03-29T16:47:35Z <new synonym> A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self. OMP:0000383 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self. OMP:das PMID:18621670 absence of cell-cell self recognition 2021-03-29T16:49:55Z OMP:0000384 microbial_phenotype siegele presence of cell-cell self recognition 2021-03-29T16:49:55Z A cell-cell self-recognition phenotype where cells of a microbial strain recognizes self and different populations of the same strain will merge when grown on solid medium. OMP:0000385 microbial_phenotype siegele altered cell-cell self recognition 2021-03-29T16:49:55Z OMP:0000386 aberrant cell-cell self recognition microbial_phenotype siegele DDPHENO:0000122 aberrant cell-cell self recognition increased cell-cell self recognition 2021-03-29T16:52:06Z OMP:0000387 microbial_phenotype siegele decreased cell-cell self recognition 2021-03-29T16:52:06Z OMP:0000388 microbial_phenotype siegele abolished cell-cell self recognition 2021-03-29T16:52:06Z OMP:0000389 microbial_phenotype siegele presence of transcription of gene or operon 2021-04-13T14:45:21Z OMP:0000390 microbial_phenotype siegele absence of transcription of gene or operon 2021-04-13T14:46:06Z OMP:0000391 microbial_phenotype siegele resistant to aminopyrimidine 2012-11-04T02:52:01Z An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds. OMP:0000435 mchibucos microbial_phenotype An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds. OMP:DAS not resistant to aminopyrimidine 2012-11-04T02:52:18Z An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds. OMP:0000436 mchibucos microbial_phenotype sensitivity to aminopyrimidine An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds. OMP:DAS resistant to ampicillin 2012-11-04T02:52:48Z An antimicrobial compound resistance phenotype where a cell or cells are resistant to ampicillin. OMP:0000437 OMP:0006047 This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, when possible, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into the annotation extension column. In cases where a natural grouping doesn't exist, the user should use "OMP:0007876 resistant to an antimicrobial agent" and put the CHEBI ID (or other identifier) into the annotation extension column. mchibucos microbial_phenotype true resistant to penicillin 2012-11-04T02:55:41Z An antimicrobial compound resistance phenotype where a cell or cells are resistant to penicillin. OMP:0000445 OMP:0006047 This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into column 16. mchibucos microbial_phenotype true trace element utilization phenotype 2013-05-23T01:35:26Z A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts. OMP:0000450 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mchibucos microbial_phenotype micronutrient utilization A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts. OMP:JCH heme utilization phenotype 2013-05-23T01:37:06Z An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring. OMP:0000451 haem mchibucos microbial_phenotype An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring. OMP:JCH increased heme utilization 2013-05-23T01:37:51Z An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control. OMP:0000452 mchibucos microbial_phenotype An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control. OMP:JCH decreased heme utilization 2013-05-23T01:39:39Z An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control. OMP:0000453 mchibucos microbial_phenotype An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control. OMP:JCH absence of heme utilization 2013-05-23T01:40:40Z A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron. OMP:0000454 mchibucos microbial_phenotype A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron. OMP:JCH alkaloid chemical resistance phenotype 2013-05-23T01:53:57Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure. OMP:0000455 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. alkaloid sensitivity phenotype caffeine resistance phenotype mchibucos microbial_phenotype theophylline resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure. CHEBI:22315 OMP:WAM CHEBI:28177 theophylline resistance phenotype caffeine resistance phenotype 2013-05-23T01:54:51Z An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7. OMP:0000456 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. caffeine sensitivity phenotype mchibucos microbial_phenotype An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7. CHEBI:27732 OMP:WAM resistant to caffeine 2013-05-23T01:55:13Z A caffeine resistance phenotype where an organism or cell is resistant to caffeine. OMP:0000457 mchibucos microbial_phenotype A caffeine resistance phenotype where an organism or cell is resistant to caffeine. OMP:WAM not resistant to caffeine 2013-05-23T01:55:34Z A caffeine resistance phenotype where an organism or cell is sensitive to caffeine. OMP:0000458 caffeine sensitivity mchibucos microbial_phenotype A caffeine resistance phenotype where an organism or cell is sensitive to caffeine. OMP:WAM increased caffeine resistance 2013-05-23T01:58:11Z An altered caffeine resistance phenotype where resistance is increased relative to a designated control. OMP:0000459 decreased caffeine sensitivity mchibucos microbial_phenotype An altered caffeine resistance phenotype where resistance is increased relative to a designated control. OMP:WAM decreased caffeine resistance 2013-05-23T01:58:55Z An altered caffeine resistance phenotype where resistance is decreased relative to a designated control. OMP:0000460 increased caffeine sensitivity mchibucos microbial_phenotype An altered caffeine resistance phenotype where resistance is decreased relative to a designated control. OMP:WAM outer membrane phenotype 2013-08-22T01:43:06Z A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall. OMP:0000461 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall. ISBN:9780073402406 OMP:DAS presence of an outer membrane 2013-08-22T01:47:25Z An outer membrane phenotype where a cell or cells possess an outer membrane. Diderm Gram negative OMP:0000462 microbial_phenotype mycolate outer membrane siegele An outer membrane phenotype where a cell or cells possess an outer membrane. OMP:DAS increased number of pili 2013-08-22T01:48:57Z A pilus phenotype where there is an increased number of pili per cell relative to a designated control. OMP:0000463 microbial_phenotype siegele A pilus phenotype where there is an increased number of pili per cell relative to a designated control. OMP:DAS absence of an outer membrane 2013-08-22T01:53:29Z An outer membrane phenotype where a cell or cells lack an outer membrane. OMP:0000464 microbial_phenotype siegele An outer membrane phenotype where a cell or cells lack an outer membrane. OMP:DAS decreased aerotaxis 2012-11-02T01:20:31Z An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control. OMP:0000500 mchibucos microbial_phenotype An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control. OMP:DAS increased aerotaxis 2012-11-02T01:21:21Z An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control. OMP:0000502 mchibucos microbial_phenotype An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control. OMP:DAS decreased chemotaxis 2012-11-02T01:22:28Z An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control. OMP:0000503 mchibucos microbial_phenotype An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS increased chemotaxis 2012-11-02T01:23:12Z An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control. OMP:0000505 mchibucos microbial_phenotype An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control. OMP:DAS Increased negative supercoiling 2013-08-22T05:57:07Z An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control. OMP:0001001 microbial_phenotype wmeza An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control. OMP:WAM decreased negative supercoiling 2013-08-22T05:57:56Z An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control. OMP:0001002 microbial_phenotype wmeza An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control. OMP:WAM phospholipase activity phenotype 2016-01-26T15:01:05Z An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid. GO:0004620 Jesus OMP:0005000 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype phospholipase activity GO:0004620 An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid. OMP:JG altered caffeine resistance 2014-07-23T12:18:08Z A caffeine resistance phenotype that is altered relative to a designated control. OMP:0005001 microbial_phenotype wmeza A caffeine resistance phenotype that is altered relative to a designated control. OMP:WAM temperature effects on population growth phenotype 2013-09-03T01:06:05Z A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment. OMP:0005002 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype temperature requirement for growth wmeza A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment. OMP:WAM hyperthermophile 2013-09-03T01:29:51Z A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C. OMP:0005003 microbial_phenotype wmeza A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C. ISBN:9780073402406 OMP:WAM thermophile 2013-09-03T01:36:26Z A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C. OMP:0005004 microbial_phenotype wmeza A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C. ISBN:9780073402406 OMP:WAM mesophile 2013-09-04T13:24:06Z A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C. OMP:0005005 microbial_phenotype wmeza A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C. ISBN:9780073402406 OMP:WAM psychrotroph 2013-09-04T13:38:56Z A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C. OMP:0005006 microbial_phenotype wmeza A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C. ISBN:9780073402406 OMP:WAM psychrophile 2013-09-04T13:40:27Z A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower. OMP:0005007 microbial_phenotype wmeza A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower. ISBN:9780073402406 OMP:WAM pH effects on population growth phenotype 2013-09-04T13:57:28Z A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment. OMP:0005008 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment. OMP:WAM acidophile 2013-09-04T16:18:28Z A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5. OMP:0005009 microbial_phenotype wmeza A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5. ISBN:9780073402406 OMP:WAM neutrophile 2013-09-04T16:21:50Z A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0. OMP:0005010 microbial_phenotype wmeza A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0. ISBN:780073402406 OMP:WAM alkaliphile 2013-09-04T16:24:24Z A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5. OMP:0005011 microbial_phenotype wmeza A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5. ISBN:9780073402406 OMP:WAM pressure effects on population growth phenotype 2013-09-09T11:42:28Z A population growth range phenotype related to how growth of a microbial population is affected by pressure. OMP:0005012 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A population growth range phenotype related to how growth of a microbial population is affected by pressure. OMP:WAM solute and water activity effects on population growth phenotype 2013-09-09T11:43:45Z A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment. OMP:0005013 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment. OMP:WAM piezophilic growth 2013-09-09T11:49:53Z A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure. OMP:0005014 barophilic growth microbial_phenotype wmeza A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure. ISBN:9780073402406 OMP:WAM ISBN:9780073402406 barophilic growth osmotolerant growth 2013-09-09T13:05:24Z A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration. OMP:0005015 microbial_phenotype wmeza A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration. ISBN:9780073402406 OMP:WAM halophilic growth 2013-09-09T13:06:03Z A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M. OMP:0005016 microbial_phenotype wmeza A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M. ISBN:9780073402406 OMP:WAM SOS response phenotype 2013-09-18T18:35:30Z A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage. DNA damage response OMP:0005017 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage. ISBN:9781615831838 OMP:WAM altered SOS response phenotype 2013-09-19T13:39:34Z An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control. OMP:0005018 microbial_phenotype wmeza An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control. OMP:WAM absence of phospholipase activity 2016-01-26T15:16:42Z A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity. Jesus OMP:0005019 microbial_phenotype A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity. OMP:JG increased basal expression of the SOS response 2013-09-19T15:54:21Z An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control. OMP:0005020 microbial_phenotype wmeza An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control. OMP:WAM decreased basal expression of the SOS response 2013-09-19T15:55:16Z An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control. OMP:0005021 microbial_phenotype wmeza An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control. OMP:WAM absence of an SOS response 2013-09-19T16:25:09Z An SOS response phenotype where a cell or cells lack an SOS response. OMP:0005022 microbial_phenotype wmeza An SOS response phenotype where a cell or cells lack an SOS response. OMP:WAM presence of an SOS response 2013-09-19T16:25:30Z An SOS response phenotype where a cell or cells exhibit an SOS response. OMP:0005023 microbial_phenotype wmeza An SOS response phenotype where a cell or cells exhibit an SOS response. OMP:WAM increased induced expression of the SOS response 2013-09-20T13:01:05Z An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control. OMP:0005024 microbial_phenotype wmeza An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control. OMP:WAM decreased induced expression of the SOS response 2013-09-20T13:26:46Z An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control. OMP:0005025 microbial_phenotype wmeza An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control. OMP:WAM presence of phospholipase activity 2016-01-26T15:17:15Z A phospholipase activity phenotype where an organism exhibits phospholipase activity. Jesus OMP:0005026 microbial_phenotype A phospholipase activity phenotype where an organism exhibits phospholipase activity. OMP:JG stress-induced mutagenesis phenotype 2013-09-20T15:00:09Z A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress. OMP:0005027 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress. OMP:WAM PMID:17917874 PMID:3045565 altered phospholipase activity 2016-01-26T15:17:51Z A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control. Jesus OMP:0005028 microbial_phenotype A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control. OMP:JG altered tetracycline resistance 2014-07-23T17:05:20Z A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control. OMP:0005029 microbial_phenotype wmeza A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control. OMP:WAM increased stress-induced mutagenesis 2013-09-25T15:57:03Z An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control. OMP:0005030 microbial_phenotype wmeza An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control. OMP:WAM decreased stress-induced mutagenesis 2013-09-25T15:57:46Z An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control. OMP:0005031 microbial_phenotype wmeza An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control. OMP:WAM presence of stress-induced mutagenesis 2013-09-25T15:59:12Z A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis. OMP:0005032 microbial_phenotype wmeza A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis. OMP:WAM absence of stress-induced mutagenesis 2013-09-25T18:20:22Z A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis. OMP:0005033 microbial_phenotype wmeza A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis. OMP:WAM altered quinolone resistance 2014-07-23T17:13:45Z A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control. OMP:0005034 microbial_phenotype wmeza A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control. OMP:WAM quick-stop DNA replication 2013-10-15T17:51:12Z A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. OMP:0005035 microbial_phenotype wmeza A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. OMP:JHU OMP:WAM slow-stop DNA replication 2013-10-15T17:51:40Z A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift. OMP:0005036 microbial_phenotype wmeza A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift. OMP:JHU OMP:WAM origin-independent replication 2013-10-15T18:53:12Z A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication. OMP:0005037 microbial_phenotype wmeza A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication. OMP:WAM response to oxidative stress phenotype 2013-10-15T18:59:38Z OMP:0005038 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza response to freeze/thaw stress phenotype 2013-10-15T18:59:52Z A stress response phenotype dealing with the response to cyclic freezing and melting. OMP:0005039 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A stress response phenotype dealing with the response to cyclic freezing and melting. ISBN:1555810489 OMP:WAM response to acid pH stress phenotype 2013-10-16T17:14:52Z A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5. OMP:0005040 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5. OMP:WAM response to alkaline pH stress phenotype 2013-10-16T17:15:59Z A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5. OMP:0005041 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5. OMP:WAM homologous recombination phenotype 2013-10-18T18:34:37Z A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA. OMP:0005042 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA. ISBN:9780471768654 OMP:WAM site-specific recombination phenotype 2013-10-18T18:34:58Z A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA. OMP:0005043 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA. ISBN:9780471768654 OMP:WAM altered mitotic recombination 2014-07-24T13:27:41Z A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control. OMP:0005044 microbial_phenotype wmeza A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control. OMP:WAM mitotic recombination phenotype 2013-10-18T18:38:05Z A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. OMP:0005045 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. ISBN:9780198529170 OMP:WAM gene silencing phenotype 2013-10-18T18:38:43Z A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation. GO:0016458 OMP:0005046 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza gene silencing GO:0016458 A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation. GO:0016458 OMP:WAM chromosome segregation phenotype 2013-10-18T18:39:04Z A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. GO::0007059 OMP:0005047 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. GO:0007059 OMP:WAM chromosome segregation GO::0007059 mutation frequency phenotype 2013-10-18T18:39:27Z A genetic material phenotype dealing with the frequency of mutations. OMP:0005048 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A genetic material phenotype dealing with the frequency of mutations. ISBN:9780198529170 OMP:WAM increased frequency of homologous recombination 2013-10-23T19:46:15Z A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control. OMP:0005049 microbial_phenotype wmeza A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control. OMP:WAM decreased frequency of homologous recombination 2013-10-24T12:52:41Z A homologous recombination phenotype where homologous recombination is decreased relative to a designated control. OMP:0005050 microbial_phenotype wmeza A homologous recombination phenotype where homologous recombination is decreased relative to a designated control. OMP:WAM presence of homologous recombination 2013-10-25T12:21:41Z A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination. OMP:0005051 microbial_phenotype wmeza A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination. OMP:WAM absence of homologous recombination 2013-10-25T12:22:04Z A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination. OMP:0005052 microbial_phenotype wmeza A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination. OMP:WAM altered induced expression of the SOS response 2014-07-30T12:34:21Z An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control. OMP:0005053 microbial_phenotype wmeza An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control. OMP:WAM altered basal expression of the SOS response 2014-07-30T12:58:59Z An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control. OMP:0005054 microbial_phenotype wmeza An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control. OMP:WAM increased frequency of site-specific recombination 2013-10-29T13:14:25Z A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control. OMP:0005055 microbial_phenotype wmeza A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control. OMP:WAM decreased frequency of site-specific recombination 2013-10-29T13:15:06Z A site specific recombination phenotype where site specific recombination is decreased relative to a designated control. OMP:0005056 microbial_phenotype wmeza A site specific recombination phenotype where site specific recombination is decreased relative to a designated control. OMP:WAM absence of site-specific recombination 2013-10-29T13:15:28Z A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination. OMP:0005057 microbial_phenotype wmeza A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination. OMP:WAM presence of site-specific recombination 2013-10-29T13:20:16Z A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination. OMP:0005058 microbial_phenotype wmeza A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination. OMP:WAM transposable element transposition phenotype 2013-10-30T18:35:34Z A genetic material phenotype dealing with DNA sequences that change positions within the genome. APO:0000047 GO:0032196 OMP:0005059 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza transposable element transposition APO:0000047 A genetic material phenotype dealing with DNA sequences that change positions within the genome. ISBN:9780198529170 OMP:WAM transposition GO:0032196 decreased frequency of chromosome missegregation 2013-11-04T18:09:09Z An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control. OMP:0005060 microbial_phenotype wmeza An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control. OMP:WAM increased frequency of chromosome missegregation 2013-11-04T18:09:38Z An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control. OMP:0005061 increased aneuploidy microbial_phenotype wmeza An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control. OMP:WAM increased phospholipase activity 2016-01-26T15:18:34Z An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control. Jesus OMP:0005062 microbial_phenotype An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control. OMP:JG decreased phospholipase activity 2016-01-26T15:19:23Z An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control. Jesus OMP:0005063 microbial_phenotype An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control. OMP:JG increased frequency of gene silencing 2013-11-04T18:21:37Z An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control. OMP:0005064 microbial_phenotype wmeza An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control. OMP:WAM decreased frequency of gene silencing 2013-11-04T18:21:56Z An gene silencing phenotype where gene silencing is decreased relative to a designated control. OMP:0005065 microbial_phenotype wmeza An gene silencing phenotype where gene silencing is decreased relative to a designated control. OMP:WAM absence of gene silencing 2013-11-04T18:33:14Z A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing. OMP:0005066 microbial_phenotype wmeza A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing. OMP:WAM presence of gene silencing 2013-11-04T18:34:20Z A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing. OMP:0005067 microbial_phenotype wmeza A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing. OMP:WAM increased mutation frequency 2013-11-08T17:05:44Z An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control. OMP:0005068 microbial_phenotype wmeza An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control. OMP:WAM decreased mutation frequency 2013-11-08T17:11:14Z An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control. OMP:0005069 microbial_phenotype wmeza An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control. OMP:WAM increased mitotic recombination 2013-11-08T17:11:59Z An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control. OMP:0005070 microbial_phenotype wmeza An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control. OMP:WAM decreased mitotic recombination 2013-11-08T17:12:27Z An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control. OMP:0005071 microbial_phenotype wmeza An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control. OMP:WAM absence of mitotic recombination 2013-11-08T17:35:56Z A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination. OMP:0005072 microbial_phenotype wmeza A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination. OMP:WAM presence of mitotic recombination 2013-11-08T17:36:20Z A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination. OMP:0005073 microbial_phenotype wmeza A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination. OMP:WAM increased rate of transposable element transposition 2013-11-11T13:41:50Z A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control. OMP:0005074 microbial_phenotype wmeza A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control. OMP:WAM decreased rate of transposable element transposition 2013-11-11T13:42:44Z A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control. OMP:0005075 microbial_phenotype wmeza A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control. OMP:WAM increased resistance to acidic pH stress 2013-11-15T18:09:55Z An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control. OMP:0005076 decreased acidic pH sensitivity microbial_phenotype wmeza An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control. OMP:WAM OMP:WAM decreased acidic pH sensitivity decreased resistance to acidic pH stress 2013-11-15T18:12:48Z An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control. OMP:0005077 increased sensitivity to acid pH stress microbial_phenotype wmeza OMP:WAM increased sensitivity to acid pH stress An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control. OMP:WAM increased resistance to alkaline pH stress 2013-11-15T18:14:08Z An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control. OMP:0005078 decreased alkaline pH sensitivity microbial_phenotype wmeza An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control. OMP:WAM OMP:WAM decreased alkaline pH sensitivity decreased resistance to alkaline pH stress 2013-11-15T18:16:03Z An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control. OMP:0005079 increased alkaline pH sensitivity microbial_phenotype wmeza An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control. OMP:WAM OMP:WAM increased alkaline pH sensitivity response to dessication stress phenotype 2013-11-18T11:42:37Z A stress response phenotype dealing with the removal or immobilisation of water. OMP:0005080 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A stress response phenotype dealing with the removal or immobilisation of water. ISBN:9780471138228 OMP:WAM response to radiation stress phenotype 2013-11-18T11:50:57Z A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths. OMP:0005081 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype radiation resistance wmeza A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths. OMP:WAM response to thermotolerance stress phenotype 2013-11-18T12:22:55Z A stress response phenotype dealing with the resistance response to normally lethal high temperature levels. OMP:0005082 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A stress response phenotype dealing with the resistance response to normally lethal high temperature levels. OMP:WAM response to ionizing radiation phenotype 2013-11-22T15:55:45Z A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation. OMP:0005083 microbial_phenotype wmeza A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation. ISBN:9780471387350 OMP:WAM resistance to UV radiation phenotype 2013-11-22T15:56:27Z A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm). OMP:0005084 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm). ISO:21348 OMP:WAM resistance to gamma-ray radiation phenotype 2013-11-22T16:04:42Z A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation. OMP:0005085 microbial_phenotype wmeza A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation. OMP:WAM resistance to x-ray radiation 2013-11-22T16:05:02Z A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays. OMP:0005086 microbial_phenotype wmeza A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays. OMP:WAM increased resistance to dessication stress 2013-12-06T14:14:31Z An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control. OMP:0005087 decreased dessication sensitivity microbial_phenotype wmeza OMP:WAM decreased dessication sensitivity An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control. OMP:WAM decreased resistance to dessication stress 2013-12-06T14:15:06Z An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control. OMP:0005088 increased dessication sensitivity microbial_phenotype wmeza OMP:WAM increased dessication sensitivity An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control. OMP:WAM increased resistance to freeze/thawing stress 2013-12-06T14:28:16Z An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control. OMP:0005089 microbial_phenotype wmeza An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control. OMP:WAM decreased resistance to freeze/thawing stress 2013-12-06T14:28:46Z An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control. OMP:0005090 decreased freeze/thaw sensitivity. microbial_phenotype wmeza An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control. OMP:WAM OMP:WAM decreased freeze/thaw sensitivity. increased resistance to oxidative stress 2013-12-06T17:57:46Z An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control. OMP:0005091 decreased sensitivity to oxidative stress microbial_phenotype wmeza An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control. OMP:WAM OMP:WAM decreased sensitivity to oxidative stress decreased resistance to oxidative stress 2013-12-06T17:59:14Z An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control. OMP:0005092 increased sensitivity to oxidative stress microbial_phenotype wmeza An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control. OMP:WAM OMP:WAM increased sensitivity to oxidative stress increased resistance to gamma-ray radiation 2013-12-17T13:05:40Z An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control. OMP:0005093 decreased gamma ray sensitivity microbial_phenotype wmeza An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control. OMP:WAM OMP:WAM decreased gamma ray sensitivity decreased resistance to gamma-ray radiation 2013-12-17T13:06:05Z An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control. OMP:0005094 increased gamma ray sensitivity microbial_phenotype wmeza An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control. OMP:WAM OMP:WAM increased gamma ray sensitivity increased resistance to x-ray radiation 2013-12-17T13:26:43Z An altered x-ray radiation phenotype were resistance is increased relative to a designated control. OMP:0005095 decreased x-ray sensitivity microbial_phenotype wmeza OMP:WAM decreased x-ray sensitivity An altered x-ray radiation phenotype were resistance is increased relative to a designated control. OMP:WAM decreased resistance to x-ray radiation 2013-12-17T13:28:20Z An altered x-ray radiation phenotype where resistance is decreased relative to a designated control. OMP:0005096 increased x-ray sensitivity microbial_phenotype wmeza An altered x-ray radiation phenotype where resistance is decreased relative to a designated control. OMP:WAM OMP:WAM increased x-ray sensitivity increased resistance to UV radiation 2013-12-17T13:41:53Z An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control. OMP:0005097 decreased UV sensitivity microbial_phenotype wmeza OMP:WAM decreased UV sensitivity An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control. OMP:WAM decreased resistance to UV radiation 2013-12-17T13:43:32Z An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control. OMP:0005098 increased UV sensitivity microbial_phenotype wmeza An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control. OMP:WAM OMP:WAM increased UV sensitivity response to starvation stress phenotype 2014-01-21T12:13:04Z A stress response phenotype dealing with the response to deprivation of nourishment. OMP:0005099 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A stress response phenotype dealing with the response to deprivation of nourishment. GO:0009267 OMP:WAM macrolide dependent growth 2014-02-11T11:53:51Z A growth phenotype where growth is dependent on the presence of a macrolide. OMP:0005100 erythromycin dependent growth microbial_phenotype wmeza A growth phenotype where growth is dependent on the presence of a macrolide. OMP:WAM aminoglycoside dependent growth 2014-02-11T11:54:51Z A growth phenotype where growth is dependent on the presence of an aminoglycoside. OMP:0005101 microbial_phenotype streptomycin dependent growth wmeza A growth phenotype where growth is dependent on the presence of an aminoglycoside. OMP:WAM increased enzymatic activity 2014-04-17T10:54:45Z An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control. OMP:0005102 microbial_phenotype wmeza An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control. OMP:WAM decreased catalytic activity 2014-04-17T10:55:05Z An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control. OMP:0005103 microbial_phenotype wmeza An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control. OMP:WAM abolished resistance to dessication stress 2014-07-17T13:11:33Z A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished. OMP:0005104 microbial_phenotype wmeza A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished. OMP:WAM abolished resistance to freeze/thawing stress 2014-07-17T14:10:28Z A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished. OMP:0005105 microbial_phenotype wmeza A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished. OMP:WAM increased lifespan 2014-05-07T12:39:57Z A lifespan phenotype where lifespan is increased relative to a designated control. OMP:0005106 microbial_phenotype wmeza A lifespan phenotype where lifespan is increased relative to a designated control. OMP:WAM decreased lifespan 2014-05-07T12:40:14Z An altered lifespan phenotype where the lifespan is decreased relative to a designated control. OMP:0005107 microbial_phenotype wmeza An altered lifespan phenotype where the lifespan is decreased relative to a designated control. OMP:WAM increased cell diameter 2014-07-02T18:39:12Z MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control. OMP:0005108 OMP:0007664 increased cell width microbial_phenotype wmeza MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control. OMP:DAS OMP:WAM decreased cell diameter 2014-07-02T18:46:00Z MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control. OMP:0005109 OMP:0007665 decreased cell width microbial_phenotype wmeza MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control. OMP:DAS OMP:WAM abolished phospholipase activity 2016-01-26T15:19:53Z A decreased phospholipase activity phenotype where phospholipase activity is abolished. Jesus OMP:0005110 microbial_phenotype A decreased phospholipase activity phenotype where phospholipase activity is abolished. OMP:JG resistance to killing by host phenotype 2016-02-02T13:52:43Z A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host. APO:0000324 Jesus OMP:0005111 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host. OMP:JG resistance to killing by host cells APO:0000324 response to SDS-EDTA stress phenotype 2014-07-07T13:21:43Z A stress response phenotype dealing with the response to exposure to SDS-EDTA. OMP:0005112 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A stress response phenotype dealing with the response to exposure to SDS-EDTA. OMP:WAM decreased resistance to SDS-EDTA stress 2014-07-07T13:50:24Z An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control. OMP:0005113 microbial_phenotype wmeza An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control. OMP:WAM increased resistance to SDS-EDTA stress 2014-07-07T13:50:45Z An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control. OMP:0005114 microbial_phenotype wmeza An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control. OMP:WAM cell cycle phenotype 2014-08-07T14:54:52Z A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division. GO:0007049 OMP:0005115 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell division cycle cell division phenotype microbial_phenotype wmeza A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division. GO:0007049 OMP:WAM cell cycle GO:0007049 multi-organism process phenotype 2014-07-08T17:10:17Z A microbial phenotype related to a biological process that involves two or more organisms of the same or different species. GO:0051704 OMP:0005116 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype wmeza A microbial phenotype related to a biological process that involves two or more organisms of the same or different species. GO:0051704 OMP:DAS multi-organism process GO:0051704 presence of hemolysis 2014-07-08T17:55:17Z A hemolysis test phenotype where a cell or cells causes hemolysis. OMP:0005117 microbial_phenotype wmeza A hemolysis test phenotype where a cell or cells causes hemolysis. OMP:WAM altered resistance to acidic pH stress phenotype 2014-07-11T12:55:53Z A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control. OMP:0005118 microbial_phenotype wmeza A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control. OMP:WAM altered resistance to alkaline pH stress phenotype 2014-07-11T12:58:56Z A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control. OMP:0005119 microbial_phenotype wmeza A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control. OMP:WAM altered resistance to dessication stress phenotype 2014-07-11T12:59:47Z A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control. OMP:0005120 microbial_phenotype wmeza A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control. OMP:WAM altered resistance to freeze/thaw stress 2014-07-11T13:00:23Z A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control. OMP:0005121 microbial_phenotype wmeza A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control. OMP:JCH altered resistance to oxidative stress 2014-07-11T13:03:36Z A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control. OMP:0005122 microbial_phenotype wmeza A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control. OMP:WAM altered resistance to gamma-ray radiation 2014-07-11T13:16:15Z A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control. OMP:0005123 microbial_phenotype wmeza A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control. OMP:WAM altered resistance to x-ray radiation 2014-07-11T13:16:47Z A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control. OMP:0005124 microbial_phenotype wmeza A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control. OMP:WAM altered UV-radiation resistance 2014-07-11T13:56:51Z A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control. OMP:0005125 microbial_phenotype wmeza A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control. OMP:WAM altered resistance to SDS-EDTA stress 2014-07-11T13:57:22Z An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control. OMP:0005126 microbial_phenotype wmeza An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control. OMP:WAM abolished resistance to acidic pH stress 2014-07-15T16:46:17Z A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished. OMP:0005127 microbial_phenotype wmeza A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished. OMP:WAM abolished resistance to alkaline pH stress 2014-07-15T17:31:56Z A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished. OMP:0005128 microbial_phenotype wmeza A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished. OMP:WAM altered biofilm formation 2014-07-16T12:36:13Z A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control. OMP:0005129 microbial_phenotype wmeza A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control. OMP:WAM altered enzymatic activity 2014-07-16T17:48:24Z An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control. OMP:0005130 microbial_phenotype wmeza An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control. OMP:JCH abolished resistance to oxidative stress 2014-07-17T14:18:37Z A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished. OMP:0005131 microbial_phenotype wmeza A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished. OMP:WAM abolished resistance to gamma ray radiation 2014-07-17T14:23:39Z A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished. OMP:0005132 microbial_phenotype wmeza A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished. OMP:WAM abolished resistance to x-ray radiation 2014-07-17T14:28:44Z A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished. OMP:0005133 microbial_phenotype wmeza A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished. OMP:WAM abolished resistance to UV radiation 2014-07-17T17:22:15Z A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished. OMP:0005134 microbial_phenotype wmeza A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished. OMP:WAM abolished resistance to SDS-EDTA stress 2014-07-17T17:39:39Z A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished. OMP:0005135 microbial_phenotype wmeza A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished. OMP:WAM altered cell cycle 2014-08-07T14:55:46Z A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control. OMP:0005136 abnormal cell cycle microbial_phenotype wmeza A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control. OMP:WAM FYPO:0000011 abnormal cell cycle increased septation 2014-08-07T14:57:39Z An altered septation phenotype where formation of new cell septa is increased relative to a designated control. OMP:0005137 microbial_phenotype wmeza An altered septation phenotype where formation of new cell septa is increased relative to a designated control. OMP:WAM decreased septation 2014-08-07T14:58:34Z An altered septation phenotype where formation of new cell septa is decreased relative to a designated control. OMP:0005138 microbial_phenotype wmeza An altered septation phenotype where formation of new cell septa is decreased relative to a designated control. OMP:WAM presence of resistance to killing by host 2016-02-02T13:54:09Z A resistance to killing by host phenotype where a microbe is resistant to killing by a host. Jesus OMP:0005139 microbial_phenotype A resistance to killing by host phenotype where a microbe is resistant to killing by a host. OMP:JG absence of resistance to killing by host 2016-02-02T13:54:58Z A resistance to killing by host phenotype where a microbe is sensitive to killing by a host. Jesus OMP:0005140 microbial_phenotype A resistance to killing by host phenotype where a microbe is sensitive to killing by a host. OMP:JG altered resistance to killing by host 2016-02-02T13:55:50Z A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control. Jesus OMP:0005141 microbial_phenotype A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control. OMP:JG increased resistance to killing by host 2016-02-02T13:57:14Z An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control. Jesus OMP:0005142 microbial_phenotype An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control. OMP:JG decreased resistance to killing by host 2016-02-02T13:57:57Z An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control. Jesus OMP:0005143 microbial_phenotype An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control. OMP:JG vacuolar morphology phenotype 2016-02-03T16:33:50Z A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions. GO:0005773 Jesus OMP:0005144 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype vacuole GO:0005773 A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions. GO:0005773 OMP:JG altered vacuolar morphology 2016-02-03T16:37:58Z A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control. Jesus OMP:0005145 microbial_phenotype A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control. OMP:JG decreased vacuolar size 2016-02-03T16:39:06Z An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control. Jesus OMP:0005146 microbial_phenotype An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control. OMP:JG increased vacuolar size 2016-02-03T16:39:51Z An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control. Jesus OMP:0005147 microbial_phenotype An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control. OMP:JG ferric reductase activity phenotype 2016-02-11T12:43:04Z An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor. Jesus OMP:0005148 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor. OMP:JG absence of ferric reductase activity 2016-02-11T12:44:19Z A ferric reductase phenotype where an organism does not exhibit ferric reductase activity. Jesus OMP:0005149 microbial_phenotype A ferric reductase phenotype where an organism does not exhibit ferric reductase activity. OMP:JG altered ferric reductase activity 2016-02-11T12:44:51Z A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control. Jesus OMP:0005150 microbial_phenotype A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control. OMP:JG decreased ferric reductase activity 2016-02-11T12:45:18Z An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control. Jesus OMP:0005151 microbial_phenotype An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control. OMP:JG increased ferric reductase activity 2016-02-11T12:45:43Z An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control. Jesus OMP:0005152 microbial_phenotype An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control. OMP:JG presence of ferric reductase activity 2016-02-11T12:46:10Z A ferric reductase phenotype where an organism exhibits ferric reductase activity. Jesus OMP:0005153 microbial_phenotype A ferric reductase phenotype where an organism exhibits ferric reductase activity. OMP:JG protein kinase A activity phenotype 2016-02-11T13:11:51Z An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors. Jesus OMP:0005154 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors. OMP:JG absence of protein kinase A activity 2016-02-11T13:12:38Z A protein kinase A phenotype where an organism does not exhibit protein kinase A activity. Jesus OMP:0005155 microbial_phenotype A protein kinase A phenotype where an organism does not exhibit protein kinase A activity. OMP:JG altered protein kinase A activity 2016-02-11T13:14:19Z A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control. Jesus OMP:0005156 microbial_phenotype A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control. OMP:JG decreased protein kinase A activity 2016-02-11T13:14:52Z An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control. Jesus OMP:0005157 microbial_phenotype An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control. OMP:JG increased protein kinase A activity 2016-02-11T13:15:29Z An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control. Jesus OMP:0005158 microbial_phenotype An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control. OMP:JG presence of protein kinase A activity 2016-02-11T13:16:11Z A protein kinase A phenotype where an organism exhibits protein kinase A activity. Jesus OMP:0005159 microbial_phenotype A protein kinase A phenotype where an organism exhibits protein kinase A activity. OMP:JG phosphatase activity phenotype 2016-02-11T13:29:38Z An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive. Jesus OMP:0005160 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive. OMP:JG absence of phosphatase activity 2016-02-11T13:31:39Z A phosphatase phenotype where an organism does not exhibit Phosphatase activity. Jesus OMP:0005161 microbial_phenotype A phosphatase phenotype where an organism does not exhibit Phosphatase activity. OMP:JG altered phosphatase activity 2016-02-11T13:32:34Z A phosphatase phenotype where phosphatase activity is altered relative to a designated control. Jesus OMP:0005162 microbial_phenotype A phosphatase phenotype where phosphatase activity is altered relative to a designated control. OMP:JG decreased phosphatase activity 2016-02-11T13:33:05Z A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control. Jesus OMP:0005163 microbial_phenotype A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control. OMP:JG increased phosphatase activity 2016-02-11T13:35:13Z An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control. Jesus OMP:0005164 microbial_phenotype An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control. OMP:JG presence of phosphatase activity 2016-02-11T13:37:34Z A phosphatase phenotype where an organism exhibits phosphatase activity. Jesus OMP:0005165 microbial_phenotype A phosphatase phenotype where an organism exhibits phosphatase activity. OMP:JG superoxide dismutase activity phenotype 2016-02-15T15:25:14Z An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. GO:0004784 Jesus OMP:0005166 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. GO:0004784 OMP:JG superoxide dismutase activity GO:0004784 absence of superoxide dismutase activity 2016-02-15T15:28:14Z A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity. Jesus OMP:0005167 microbial_phenotype A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity. OMP:JG altered superoxide dismutase activity 2016-02-15T15:29:30Z A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control. Jesus OMP:0005168 microbial_phenotype A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control. OMP:JG decreased superoxide dismutase activity 2016-02-15T15:30:28Z A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control. Jesus OMP:0005169 microbial_phenotype A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control. OMP:JG increased superoxide dismutase activity 2016-02-15T15:31:28Z An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control. Jesus OMP:0005170 microbial_phenotype An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control. OMP:JG presence of superoxide dismutase activity 2016-02-15T15:32:13Z A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity. Jesus OMP:0005171 microbial_phenotype A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity. OMP:JG delayed cell cycle progression 2016-02-15T16:34:58Z An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control. Jesus OMP:0005172 microbial_phenotype An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control. OMP:JG acid phosphatase activity phenotype 2016-05-18T14:29:30Z An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum. GO:0003993 Jesus OMP:0005173 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum. OMP:JG acid phosphatase activity GO:0003993 presence of acid phosphatase activity 2016-05-18T14:33:20Z An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity. Jesus OMP:0005174 microbial_phenotype An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity. OMP:JG absence of acid phosphatase activity 2016-05-18T14:39:41Z An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity. Jesus OMP:0005175 microbial_phenotype An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity. OMP:JG altered acid phosphatase activity 2016-05-18T14:40:33Z An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control. Jesus OMP:0005176 microbial_phenotype An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control. OMP:JG decreased acid phosphatase activity 2016-05-18T14:41:06Z An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control. Jesus OMP:0005177 microbial_phenotype An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control. OMP:JG abolished acid phosphatase activity 2016-05-18T14:41:52Z A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished. Jesus OMP:0005178 microbial_phenotype A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished. OMP:JG increased acid phosphatase activity 2016-05-18T14:43:12Z An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control. Jesus OMP:0005179 microbial_phenotype An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control. OMP:JG cytoskeleton morphology phenotype 2016-05-21T09:09:03Z A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell. GO:0005856 Jesus OMP:0005180 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell. OMP:JG cytoskeleton GO:0005856 altered cytoskeleton morphology phenotype 2016-05-21T09:57:50Z A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control. Jesus OMP:0005181 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control. GO:JG actin cytoskeleton morphology phenotype 2016-05-21T09:59:30Z A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell. GO:00015629 Jesus OMP:0005182 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell. OMP:JG absence of actin cytoskeleton 2016-05-21T10:01:36Z An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton. Jesus OMP:0005183 microbial_phenotype An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton. OMP:JG presence of actin cytoskeleton 2016-05-21T10:03:01Z An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton. Jesus OMP:0005184 microbial_phenotype An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton. OMP:JG altered actin cytoskeleton morphology 2016-05-21T10:03:47Z An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control. Jesus OMP:0005185 microbial_phenotype An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control. OMP:JG decreased cytoskeleton phenotype 2016-05-21T10:04:40Z An altered cytoskeleton morphology phenotype where cytoskeleton morphology is decreased relative to a designated control. Jesus OMP:0005186 microbial_phenotype true An altered cytoskeleton morphology phenotype where cytoskeleton morphology is decreased relative to a designated control. OMP:JG abolished cytoskeleton morphology 2016-05-21T10:05:21Z A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished. Jesus OMP:0005187 microbial_phenotype true A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished. OMP:JG increased cytoskeleton morphology 2016-05-21T10:06:05Z An altered cytoskeleton morphology phenotype where cytoskeleton morphology is increased relative to a designated control. Jesus OMP:0005188 microbial_phenotype true An altered cytoskeleton morphology phenotype where cytoskeleton morphology is increased relative to a designated control. OMP:JG anaerobic population growth phenotype 2016-06-09T15:08:16Z A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen. Jesus OMP:0005189 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen. OMP:JG presence of anaerobic population growth 2016-06-09T15:10:36Z A population growth range phenotype where a microbial population is able to grow in the absence of oxygen. Jesus OMP:0005190 microbial_phenotype A population growth range phenotype where a microbial population is able to grow in the absence of oxygen. OMP:JG absence of anaerobic population growth 2016-06-09T15:12:13Z An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen. Jesus OMP:0005191 microbial_phenotype An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen. OMP:JG altered anaerobic population growth 2016-06-09T15:12:52Z A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control. Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. Jesus OMP:0005192 microbial_phenotype A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control. OMP:JG increased anaerobic population growth yield 2016-06-09T15:13:45Z An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control. Jesus OMP:0005193 microbial_phenotype An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control. OMP:JG decreased anaerobic population growth yield 2016-06-09T15:14:35Z An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control. Jesus OMP:0005194 microbial_phenotype An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control. OMP:JG abolished anaerobic population growth 2016-06-09T15:15:50Z An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished. Jesus OMP:0005195 microbial_phenotype An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished. OMP:JG increased anaerobic population growth rate 2016-06-09T15:19:53Z An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control. Jesus OMP:0005196 microbial_phenotype An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control. OMP:JG decreased anaerobic population growth rate 2016-06-09T15:21:49Z An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control. Jesus OMP:0005197 microbial_phenotype An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control. OMP:JG alpha-1,3-mannosyltransferase activity phenotype 2016-06-09T23:05:33Z An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage. GO:0000033 Jesus OMP:0005198 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage. OMP:JG alpha-1,3- mannosyltransferase activity GO:0000033 presence of alpha-1,3-mannosyltransferase activity 2016-06-09T23:08:19Z An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity. Jesus OMP:0005199 microbial_phenotype An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity. OMP:JG absence of alpha-1,3-mannosyltransferase activity 2016-06-09T23:09:26Z An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity. Jesus OMP:0005200 microbial_phenotype An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity. GO:JG altered alpha-1,3-mannosyltransferase activity 2016-06-09T23:13:17Z An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control. Jesus OMP:0005201 microbial_phenotype An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control. OMP:JG increased alpha-1,3-mannosyltransferase activity 2016-06-09T23:14:41Z An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control. Jesus OMP:0005202 microbial_phenotype An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control. OMP:JG decreased alpha-1,3-mannosyltransferase activity 2016-06-09T23:15:42Z An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control. Jesus OMP:0005203 microbial_phenotype An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control. OMP:JG abolished alpha-1,3-mannosyltransferase activity 2016-06-09T23:16:29Z An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished. Jesus OMP:0005204 microbial_phenotype An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished. OMP:JG adhesion phenotype 2016-06-20T14:06:30Z A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly. APO:0000288 GO:0022610 Jesus OMP:0005205 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype adhesion APO:0000288 biological adhesion GO:0022610 A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly. OMP:JG adhesion to host phenotype 2016-06-20T14:10:51Z An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship. GO:0044406 Jesus OMP:0005206 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship. OMP:JG adhesion to host GO:0044406 absence of adhesion to host 2016-06-20T14:12:43Z An adhesion to host phenotype where a microbe lacks the ability to attach to a host. Jesus OMP:0005207 microbial_phenotype An adhesion to host phenotype where a microbe lacks the ability to attach to a host. OMP:JG presence of adhesion to host 2016-06-20T14:14:40Z An adhesion to host phenotype where a microbe has the ability to attach to a host. Jesus OMP:0005208 microbial_phenotype An adhesion to host phenotype where a microbe has the ability to attach to a host. OMP:JG altered adhesion to host 2016-06-20T14:15:04Z An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control. Jesus OMP:0005209 microbial_phenotype An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control. OMP:JG decreased adhesion to host 2016-06-20T14:16:04Z An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control. Jesus OMP:0005210 microbial_phenotype An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control. OMP:JG abolished adhesion to host 2016-06-20T14:16:42Z A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished. Jesus OMP:0005211 microbial_phenotype A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished. OMP:JG increased adhesion to host 2016-06-20T14:17:26Z An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control. Jesus OMP:0005212 microbial_phenotype An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control. OMP:JG presence of adhesion 2016-06-20T14:19:00Z An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly. Jesus OMP:0005213 microbial_phenotype An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly. OMP:JG absence of adhesion 2016-06-20T14:19:34Z An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly. Jesus OMP:0005214 microbial_phenotype An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly. OMP:JG altered adhesion 2016-06-20T14:20:13Z An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control. Jesus OMP:0005215 microbial_phenotype An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control. OMP:JG increased adhesion 2016-06-20T14:20:57Z An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control. Jesus OMP:0005216 microbial_phenotype An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control. OMP:JG decreased adhesion 2016-06-20T14:21:29Z An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control. Jesus OMP:0005217 microbial_phenotype An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control. OMP:JG abolished adhesion 2016-06-20T14:22:55Z A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished. Jesus OMP:0005218 microbial_phenotype A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished. OMP:JG cell fusion phenotype 2016-06-20T23:02:09Z A cellular process phenotype involving the fusion of individual cells from different organisms. Jesus OMP:0005219 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cellular process phenotype involving the fusion of individual cells from different organisms. OMP:JG presence of cell fusion 2016-06-20T23:03:39Z A cell fusion phenotype where fusion of individual cells from different organisms occurs. Jesus OMP:0005220 microbial_phenotype A cell fusion phenotype where fusion of individual cells from different organisms occurs. OMP:JG altered cell fusion 2016-06-20T23:04:36Z A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control. Jesus OMP:0005221 microbial_phenotype A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control. OMP:JG increased cell fusion 2016-06-20T23:07:58Z An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control. Jesus OMP:0005222 microbial_phenotype An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control. OMP:JG decreased cell fusion 2016-06-20T23:08:40Z An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control. Jesus OMP:0005223 microbial_phenotype An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control. OMP:JG abolished cell fusion 2016-06-20T23:09:29Z A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished. Jesus OMP:0005224 microbial_phenotype A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished. OMP:JG delayed cell fusion 2016-06-20T23:10:02Z An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control. Jesus OMP:0005225 microbial_phenotype An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control. OMP:JG cell fusion during mating phenotype 2016-06-20T23:11:14Z A cell fusion phenotype relating to the fusion of individual cells from each partner during mating. APO:0000033 Jesus OMP:0005226 conjugation with cellular fusion microbial_phenotype cell fusion APO:0000033 A cell fusion phenotype relating to the fusion of individual cells from each partner during mating. OMP:JG GO:0000747 conjugation with cellular fusion presence of cell fusion during mating 2016-06-20T23:15:38Z A cell fusion during mating phenotype where individual cells from each partner fuse during mating. Jesus OMP:0005227 microbial_phenotype A cell fusion during mating phenotype where individual cells from each partner fuse during mating. OMP:JG absence of cell fusion during mating 2016-06-20T23:16:33Z A cell fusion during mating phenotype where cell fusion does not occur during mating. Jesus OMP:0005228 microbial_phenotype A cell fusion during mating phenotype where cell fusion does not occur during mating. OMP:JG altered cell fusion during mating 2016-06-20T23:17:17Z A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control. Jesus OMP:0005229 microbial_phenotype A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control. OMP:JG increased cell fusion during mating 2016-06-20T23:17:51Z An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating. Jesus OMP:0005230 microbial_phenotype An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating. OMP:JG decreased cell fusion during mating 2016-06-20T23:21:08Z An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating. Jesus OMP:0005231 microbial_phenotype An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating. OMP:JG abolished cell fusion during mating 2016-06-20T23:21:44Z A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished. Jesus OMP:0005232 microbial_phenotype A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished. OMP:JG cell wall morphology phenotype 2016-06-20T23:33:27Z A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. APO:0000053 Jesus OMP:0005233 microbial_phenotype Cell wall morphology APO:0000053 A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. GO:0005618 OMP:JG altered cell wall morphology 2016-06-20T23:36:20Z A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control. Jesus OMP:0005234 microbial_phenotype A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control. OMP:JG presence of cell wall 2016-06-20T23:37:37Z A cell wall morphology phenotype where a cell or cells exhibit a cell wall. Jesus OMP:0005235 microbial_phenotype A cell wall morphology phenotype where a cell or cells exhibit a cell wall. OMP:JG absence of cell wall 2016-06-20T23:38:17Z A cell wall morphology phenotype where a cell or cells lack a cell wall. Jesus OMP:0005236 microbial_phenotype A cell wall morphology phenotype where a cell or cells lack a cell wall. OMP:JG golgi apparatus phenotype 2016-06-20T23:41:43Z A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport. GO:0005794 Jesus OMP:0005237 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport. OMP:JG golgi apparatus GO:0005794 golgi apparatus morphology phenotype 2016-06-20T23:43:17Z A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack. APO:0000243 Jesus OMP:0005238 microbial_phenotype Golgi morphology APO:0000243 A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack. OMP:JG altered golgi morphology 2016-06-20T23:44:33Z A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control. Jesus OMP:0005239 microbial_phenotype A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control. OMP:JG presence of golgi apparatus 2016-06-20T23:45:22Z A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus. Jesus OMP:0005240 microbial_phenotype A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus. OMP:JG absence of golgi apparatus 2016-06-20T23:46:03Z A golgi apparatus phenotype where a cell or cells lack a golgi apparatus. Jesus OMP:0005241 microbial_phenotype A golgi apparatus phenotype where a cell or cells lack a golgi apparatus. OMP:JG delayed cell fusion during mating 2016-06-23T14:28:58Z An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control. Jesus OMP:0005242 microbial_phenotype An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control. OMP:JG filamentous growth phenotype 2016-06-23T14:38:44Z APO:0000027 An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape. GO:0030447 Jesus OMP:0005243 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype filamentous growth GO:0030447 development APO:0000027 An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape. GO:0030447 OMP:JG altered filamentous growth 2016-06-23T14:41:10Z A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control. Jesus OMP:0005244 microbial_phenotype A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control. OMP:JG increased filamentous growth 2016-06-23T14:41:44Z An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control. Jesus OMP:0005245 microbial_phenotype An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control. OMP:JG decreased filamentous growth 2016-06-23T14:42:18Z An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control. Jesus OMP:0005246 microbial_phenotype An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control. OMP:JG abolished filamentous growth 2016-06-23T14:42:45Z A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished. Jesus OMP:0005247 microbial_phenotype A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished. OMP:JG presence of filamentous growth 2016-06-23T14:43:53Z A filamentous growth phenotype where a microbe exhibits filamentous growth. Jesus OMP:0005248 microbial_phenotype A filamentous growth phenotype where a microbe exhibits filamentous growth. OMP:JG absence of filamentous growth 2016-06-23T14:44:33Z A filamentous growth phenotype where a microbe does not exhibit filamentous growth. Jesus OMP:0005249 microbial_phenotype A filamentous growth phenotype where a microbe does not exhibit filamentous growth. OMP:JG aerobic population growth phenotype 2016-06-23T14:59:55Z A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%). Jesus OMP:0005250 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%). OMP:JG absence of aerobic population growth 2016-06-23T15:00:52Z An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%). Jesus OMP:0005251 microbial_phenotype An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%). OMP:JG altered aerobic population growth 2016-06-23T15:01:40Z A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control. Jesus OMP:0005252 microbial_phenotype A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control. OMP:JG presence of aerobic population growth 2016-06-23T15:02:38Z A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2). Jesus OMP:0005253 microbial_phenotype A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2). OMP:JG microaerophilic population growth phenotype 2016-06-23T15:04:24Z A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2. Jesus OMP:0005254 microbial_phenotype A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2. OMP:JG presence of microaerophilic population growth 2016-06-23T15:05:26Z A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions. Jesus OMP:0005255 microbial_phenotype A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions. OMP:JG absence of microaerophilic growth 2016-06-23T15:06:52Z A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment. Jesus OMP:0005256 microbial_phenotype A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment. JG:OMP altered microaerophilic population growth 2016-06-23T15:07:30Z A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control. Jesus OMP:0005257 microbial_phenotype A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control. OMP:JG increased microaerophilic population growth rate 2016-06-23T15:07:51Z An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control. Jesus OMP:0005258 microbial_phenotype An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control. OMP:JG decreased microaerophilic population growth rate 2016-06-23T15:08:31Z An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. Jesus OMP:0005259 microbial_phenotype An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. OMP:JG transport phenotype 2016-06-27T14:17:43Z A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. GO:0006810 Jesus OMP:0005260 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. OMP:JG endocytosis phenotype 2016-06-27T14:20:19Z A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. APO:0000075 FYPO:0003886 GO:0006897 Jesus OMP:0005261 microbial_phenotype A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG altered endocytosis 2016-06-27T14:23:04Z An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control. Jesus OMP:0005262 microbial_phenotype An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control. OMP:JG increased endocytosis 2016-06-27T14:23:59Z An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. FYPO:0000425 Jesus OMP:0005263 increased endocytosis during vegetative growth microbial_phenotype FYPO:0000425 increased endocytosis during vegetative growth An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG decreased endocytosis 2016-06-27T14:26:10Z An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. FYPO:0000422 Jesus OMP:0005264 decreased endocytosis during vegetative growth microbial_phenotype FYPO:0000422 decreased endocytosis during vegetative growth An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG abolished endocytosis 2016-06-27T14:29:14Z A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished. Jesus OMP:0005265 abolished endocytosis during vegetative growth microbial_phenotype FYPO:0000421 abolished endocytosis during vegetative growth A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished. OMP:JG delayed onset of endocytosis 2016-06-27T14:31:13Z An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. Jesus OMP:0005266 delayed onset of endocytosis during vegetative growth microbial_phenotype FYPO:0000424 delayed onset of endocytosis during vegetative growth An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG presence of endocytosis 2016-06-27T14:32:32Z An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis. Jesus OMP:0005267 microbial_phenotype An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis. OMP:JG absence of endocytosis 2016-06-27T14:33:03Z An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis. Jesus OMP:0005268 microbial_phenotype An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis. OMP:JG endomembrane system phenotype 2016-06-27T14:45:57Z A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles. GO:0012505 Jesus OMP:0005269 PMID:19121819 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype endomembrane system GO:0012505 A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles. OMP:JG endomembrane system morphology phenotype 2016-06-27T14:48:31Z APO:0000303 An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system. Jesus OMP:0005270 microbial_phenotype endomembrane system morphology APO:0000303 An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system. OMP:JG altered endomembrane system morphology 2016-06-27T14:51:21Z An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control. Jesus OMP:0005271 microbial_phenotype An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control. OMP:JG presence of endomembrane system 2016-06-27T14:52:02Z An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system. Jesus OMP:0005272 microbial_phenotype An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system. OMP:JG absence of endomembrane system 2016-06-27T14:52:45Z An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system. Jesus OMP:0005273 microbial_phenotype An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system. OMP:JG organic heterocyclic compound resistance phenotype 2016-07-15T15:29:19Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element. D-cycloserine resistance phenotype Jesus OMP:0005274 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chloripromazine resistance phenotype coumarin resistance phenotype cycloheximide resistance phenotype methotrexate resistance phenotype microbial_phenotype paraquat dichloride resistance phenotype phenazine methosulfate resistance phenotype pyocyanin resistance phenotype radicicol resistance phenotype rifampicin resistance phenotype thiolactomycin resistance phenotype thiolactone resistance phenotype CHEBI:34905 paraquat dichloride resistance phenotype CHEBI:53396 phenazine methosulfate resistance phenotype CHEBI:556075 radicicol resistance phenotype CHEBI:62220 pyocyanin resistance phenotype CHEBI:27641 cycloheximide resistance phenotype CHEBI:28794 coumarin resistance phenotype CHEBI:3647 chloripromazine resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element. CHEBI:24532 OMP:JG CHEBI:28077 rifampicin resistance phenotype CID:445629 thiolactomycin resistance phenotype CHEBI:44185 methotrexate resistance phenotype CHEBI:40009 D-cycloserine resistance phenotype CHEBI:60317 thiolactone resistance phenotype altered organic heterocyclic compound resistance 2016-07-15T15:33:41Z An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control. Jesus OMP:0005275 microbial_phenotype An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control. OMP:JG decreased resistance to organic heterocyclic compound 2016-07-15T15:34:14Z An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control. Jesus OMP:0005276 microbial_phenotype An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control. OMP:JG abolished resistance to organic heterocyclic compound 2016-07-15T15:34:45Z A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished. Jesus OMP:0005277 microbial_phenotype A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished. OMP:JG increased resistance to organic heterocyclic compound 2016-07-15T15:35:37Z An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control. Jesus OMP:0005278 microbial_phenotype An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control. OMP:JG not resistant to organic heterocyclic compound 2016-07-15T15:36:29Z An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound. Jesus OMP:0005279 microbial_phenotype An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound. OMP:JG resistant to organic heterocyclic compound 2016-07-15T15:37:34Z An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds. Jesus OMP:0005280 cycloheximide microbial_phenotype An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds. OMP:JG CHEBI:27641 cycloheximide colonization of host tissue phenotype 2016-08-16T01:05:03Z A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue. Jesus OMP:0005281 microbial_phenotype A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue. OMP:JG presence of colonization of host tissue 2016-08-16T01:06:46Z A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host. Jesus OMP:0005282 microbial_phenotype A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host. OMP:JG absence of colonization of host tissue 2016-08-16T01:07:20Z A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host. Jesus OMP:0005283 microbial_phenotype A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host. OMP:JG altered colonization of host tissue 2016-08-16T01:07:57Z A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control. Jesus OMP:0005284 microbial_phenotype A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control. OMP:JG increased colonization of host tissue 2016-08-16T01:08:32Z An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control. Jesus OMP:0005285 microbial_phenotype An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control. OMP:JG decreased colonization of host tissue 2016-08-16T01:09:04Z An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control. Jesus OMP:0005286 microbial_phenotype An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control. OMP:JG abolished colonization of host tissue 2016-08-16T01:09:35Z A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished. Jesus OMP:0005287 microbial_phenotype A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished. OMP:JG colonization of tissue in an immunocompromised host phenotype 2016-08-16T01:46:42Z A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host. Jesus OMP:0005288 microbial_phenotype A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host. OMP:JG presence of colonization of tissue in an immunocompromised host 2016-08-16T01:47:48Z A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host. Jesus OMP:0005289 microbial_phenotype A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host. OMP:JG absence of colonization of tissue in an immunocompromised host 2016-08-16T01:48:23Z A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host. Jesus OMP:0005290 microbial_phenotype A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host. OMP:JG altered colonization of tissue in an immunocompromised host 2016-08-16T01:49:00Z A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control. Jesus OMP:0005291 microbial_phenotype A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control. OMP:JG increased colonization of tissue in an immunocompromised host 2016-08-16T01:49:41Z An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control. Jesus OMP:0005292 microbial_phenotype An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control. OMP:JG decreased colonization of tissue in an immunocompromised host 2016-08-16T01:50:17Z An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control. Jesus OMP:0005293 microbial_phenotype An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control. OMP:JG abolished colonization of tissue in an immunocompromised host 2016-08-16T01:50:45Z A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished. Jesus OMP:0005294 microbial_phenotype A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished. OMP:JG colonization of mouse tissue 2016-08-29T15:32:17Z A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue. Jesus OMP:0005295 microbial_phenotype A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue. OMP:JG presence of colonization of mouse tissue 2016-08-29T15:34:02Z A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue. Jesus OMP:0005296 microbial_phenotype A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue. OMP:JG absence of colonization of mouse tissue 2016-08-29T15:34:47Z A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue. Jesus OMP:0005297 microbial_phenotype A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue. OMP:JG altered colonization of mouse tissue 2016-08-29T15:35:22Z A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control. Jesus OMP:0005298 microbial_phenotype A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG increased colonization of mouse tissue 2016-08-29T15:36:17Z An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control. Jesus OMP:0005299 microbial_phenotype An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control. OMP:JG decreased colonization of mouse tissue 2016-08-29T15:36:52Z An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control. Jesus OMP:0005300 microbial_phenotype An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG abolished colonization of mouse tissue 2016-08-29T15:37:32Z A decreased colonization of mouse tissue phenotype where colonization is abolished. Jesus OMP:0005301 microbial_phenotype A decreased colonization of mouse tissue phenotype where colonization is abolished. OMP:JG colonization of tissue in an immunocompromised mouse phenotype 2016-08-30T11:28:41Z A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse. Jesus OMP:0005302 microbial_phenotype A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse. OMP:JG presence of colonization of tissue in an immunocompromised mouse 2016-08-30T11:31:08Z A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse. Jesus OMP:0005303 microbial_phenotype A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse. OMP:JG absence of colonization of tissue in an immunocompromised mouse 2016-08-30T11:32:11Z A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse. Jesus OMP:0005304 microbial_phenotype A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse. OMP:JG altered colonization of tissue in an immunocompromised mouse 2016-08-30T11:33:51Z A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. Jesus OMP:0005305 microbial_phenotype A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG increased colonization of tissue in an immunocompromised mouse 2016-08-30T11:35:33Z An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. Jesus OMP:0005306 microbial_phenotype An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. OMP:JG decreased colonization of tissue in an immunocompromised mouse 2016-08-30T11:35:57Z An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. Jesus OMP:0005307 microbial_phenotype An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG abolished colonization of tissue in an immunocompromised mouse 2016-08-30T11:36:46Z A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished. Jesus OMP:0005308 microbial_phenotype A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished. OMP:JG colonization of rabbit tissue phenotype 2016-08-30T11:43:47Z A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue. Jesus OMP:0005309 microbial_phenotype A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue. OMP:JG presence of colonization of rabbit tissue 2016-08-30T11:44:31Z A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue. Jesus OMP:0005310 microbial_phenotype A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue. OMP:JG absence of colonization of rabbit tissue 2016-08-30T11:45:59Z A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue. Jesus OMP:0005311 microbial_phenotype A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue. OMP:JG altered colonization of rabbit tissue 2016-08-30T11:46:52Z A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. Jesus OMP:0005312 microbial_phenotype A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG increased colonization of rabbit tissue 2016-08-30T11:47:21Z An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control. Jesus OMP:0005313 microbial_phenotype An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control. OMP:JG decreased colonization of rabbit tissue 2016-08-30T11:47:50Z An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. Jesus OMP:0005314 microbial_phenotype An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG abolished colonization of rabbit tissue 2016-08-30T11:48:21Z A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished. Jesus OMP:0005315 microbial_phenotype A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished. OMP:JG colonization of tissue in an immunocompromised rabbit phenotype 2016-08-30T11:49:36Z A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit. Jesus OMP:0005316 microbial_phenotype A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit. OMP:JG presence of colonization of tissue in an immunocompromised rabbit 2016-08-30T11:50:36Z A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit. Jesus OMP:0005317 microbial_phenotype A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit. OMP:JG absence of colonization of tissue in an immunocompromised rabbit 2016-08-30T11:52:27Z A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit. Jesus OMP:0005318 microbial_phenotype A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit. OMP:JG altered colonization of tissue in an immunocompromised rabbit 2016-08-30T11:52:54Z A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. Jesus OMP:0005319 microbial_phenotype A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG increased colonization of tissue in an immunocompromised rabbit 2016-08-30T11:55:35Z An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. Jesus OMP:0005320 microbial_phenotype An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. OMP:JG decreased colonization of tissue in an immunocompromised rabbit 2016-08-30T11:56:07Z An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. Jesus OMP:0005321 microbial_phenotype An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG abolished colonization of tissue in an immunocompromised rabbit 2016-08-30T11:56:47Z A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished. Jesus OMP:0005322 microbial_phenotype A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished. OMP:JG altered cell motility by swarming 2016-09-19T14:01:13Z A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control. OMP:0005323 jguzman microbial_phenotype A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control. OMP:JG altered cell motility by swimming 2016-09-19T14:02:03Z A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control. OMP:0005324 jguzman microbial_phenotype A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control. OMP:JG agar invasion phenotype 2016-09-23T16:58:54Z An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth. Jesus OMP:0005325 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth. OMP:JG presence of agar invasion 2016-09-23T17:03:49Z An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth. Jesus OMP:0005326 invasive growth microbial_phenotype An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth. OMP:JG APO:0000028 invasive growth absence of agar invasion 2016-09-23T17:05:49Z An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth. Jesus OMP:0005327 microbial_phenotype An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth. OMP:JG altered agar invasion 2016-09-23T17:07:22Z An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control. Jesus OMP:0005328 microbial_phenotype An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control. OMP:JG increased agar invasion 2016-09-23T17:07:59Z An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control. Jesus OMP:0005329 microbial_phenotype An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control. OMP:JG decreased agar invasion phenotype 2016-09-23T17:08:25Z An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control. Jesus OMP:0005330 microbial_phenotype An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control. OMP:JG abolished agar invasion 2016-09-23T17:08:54Z A decreased agar invasion phenotype where the ability to invade agar media is abolished. Jesus OMP:0005331 microbial_phenotype A decreased agar invasion phenotype where the ability to invade agar media is abolished. OMP:JG protein localization phenotype 2016-10-05T14:17:25Z A cellular component phenotype relating to the localization or placement of proteins within a cell. APO:0000209 Jesus OMP:0005332 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cellular component phenotype relating to the localization or placement of proteins within a cell. APO:0000209 OMP:JG protein/peptide distribution APO:0000209 altered protein localization 2016-10-05T14:18:53Z A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control. Jesus OMP:0005333 microbial_phenotype A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control. OMP:JG presence of protein localization 2016-10-05T14:19:21Z A protein localization phenotype where an organism, cell, or cells exhibit protein localization. Jesus OMP:0005334 microbial_phenotype A protein localization phenotype where an organism, cell, or cells exhibit protein localization. OMP:JG absence of protein localization 2016-10-05T14:19:51Z A protein localization phenotype where an organism, cell, or cells lack protein localization. Jesus OMP:0005335 microbial_phenotype A protein localization phenotype where an organism, cell, or cells lack protein localization. OMP:JG cell lysis phenotype 2016-10-31T13:27:46Z A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised. Jesus OMP:0005336 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised. FYPO:0002488 GO::0019835 OMP:JG absence of cell lysis 2016-10-31T13:29:12Z A cell lysis phenotype where cytolysis doesn't occur. Jesus OMP:0005337 microbial_phenotype A cell lysis phenotype where cytolysis doesn't occur. OMP:JG presence of cell lysis 2016-10-31T13:30:04Z A cell lysis phenotype where cytolysis occurs. Jesus OMP:0005338 microbial_phenotype A cell lysis phenotype where cytolysis occurs. OMP:JG altered cell lysis 2016-10-31T13:30:56Z A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control. Jesus OMP:0005339 microbial_phenotype A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control. OMP:JG decreased cell lysis 2016-10-31T13:31:44Z An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control. Jesus OMP:0005340 microbial_phenotype An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control. OMP:JG abolished cell lysis 2016-10-31T13:32:41Z A decreased cell lysis phenotype where cytolysis is abolished. Jesus OMP:0005341 microbial_phenotype A decreased cell lysis phenotype where cytolysis is abolished. OMP:JG increased cell lysis 2016-10-31T13:33:49Z An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control. Jesus OMP:0005342 microbial_phenotype An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control. OMP:JG organic aromatic compound resistance phenotype 2016-10-31T13:40:40Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound. CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype Jesus OMP:0005343 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype procaine resistance phenotype propidium iodide resistance phenotype sulfamethizole resistance phenotype triclosan resistance phenotype CHEBI:51240 propidium iodide resistance phenotype CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype CHEBI:3259 An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound. OMP:JG CHEBI:164200 triclosan resistance phenotype CHEBI:9331 sulfamethizole resistance phenotype CHEBI:8430 procaine resistance phenotype altered organic aromatic compound resistance 2016-10-31T13:45:41Z An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control. Jesus OMP:0005344 microbial_phenotype An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control. OMP:JG decreased resistance to organic aromatic compounds 2016-10-31T13:46:37Z An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control. Jesus OMP:0005345 microbial_phenotype An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control. OMP:JG abolished resistance to organic aromatic compounds 2016-10-31T13:47:39Z A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished. Jesus OMP:0005346 microbial_phenotype A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished. OMP:JG increased resistance to organic aromatic compounds 2016-10-31T13:48:38Z An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control. Jesus OMP:0005347 microbial_phenotype An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control. OMP:JG not resistant to organic aromatic compounds 2016-10-31T13:49:36Z An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds. Jesus OMP:0005348 microbial_phenotype An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds. OMP:JG resistant to organic aromatic compounds 2016-10-31T13:50:26Z An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds. Jesus OMP:0005349 microbial_phenotype An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds. OMP:JG presence of mating 2016-11-21T13:08:52Z A mating phenotype where an organism uses the process of conjugation for sexual reproduction. Jesus OMP:0005350 microbial_phenotype A mating phenotype where an organism uses the process of conjugation for sexual reproduction. OMP:JG absence of mating 2016-11-21T13:10:46Z A mating phenotype where an organism does not use the process of conjugation for sexual reproduction. Jesus OMP:0005351 microbial_phenotype A mating phenotype where an organism does not use the process of conjugation for sexual reproduction. OMP:JG altered mating 2016-11-21T13:11:47Z A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control. Jesus OMP:0005352 microbial_phenotype A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control. OMP:JG increased mating 2016-11-21T13:13:40Z An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control. Jesus OMP:0005353 microbial_phenotype An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control. OMP:JG decreased mating 2016-11-21T13:14:33Z An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control. Jesus OMP:0005354 microbial_phenotype An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control. OMP:JG abolished mating 2016-11-21T13:15:43Z A decreased mating phenotype where sexual reproduction by conjugation is abolished. Jesus OMP:0005355 microbial_phenotype A decreased mating phenotype where sexual reproduction by conjugation is abolished. OMP:JG mating efficiency phenotype 2016-11-21T13:27:01Z A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate. Jesus OMP:0005356 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Depending on the assay used, a change in measured mating efficiency may reflect a change in conjugation frequency (see OMP:0007412 mating phenotype and its descendants) and/or a change in some other biological process such as sexual sporulation (see OMP:0007045 and its descendants). For this reason mating efficiency phenotype is not a child of mating phenotype, but instead a child of sexual reproduction phenotype (OMP:0007406). microbial_phenotype A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate. FYPO:0001147 OMP:JG altered mating efficiency 2016-11-21T13:29:32Z A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control. Jesus OMP:0005357 microbial_phenotype A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control. OMP:JG increased mating efficiency 2016-11-21T13:30:39Z A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control. Jesus OMP:0005358 microbial_phenotype A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control. OMP:JG decreased mating efficiency 2016-11-21T13:32:39Z A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control. Jesus OMP:0005359 microbial_phenotype A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control. OMP:JG abolished mating efficiency 2016-11-21T13:33:33Z A decreased mating efficiency phenotype where mating is abolished. Jesus OMP:0005360 microbial_phenotype A decreased mating efficiency phenotype where mating is abolished. OMP:JG osmotaxis phenotype 2016-12-20T12:48:52Z A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se. Jesus OMP:0005361 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se. OMP:JG PMID:3059348 presence of osmotaxis 2016-12-20T12:51:45Z An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient. Jesus OMP:0005362 microbial_phenotype An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient. OMP:JG absence of osmotaxis 2016-12-20T12:52:21Z An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient. Jesus OMP:0005363 microbial_phenotype An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient. OMP:JG presence of positive osmotaxis 2016-12-20T12:53:34Z A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration. Jesus OMP:0005364 microbial_phenotype A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration. OMP:JG presence of negative osmotaxis 2016-12-20T12:54:30Z A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration. Jesus OMP:0005365 microbial_phenotype A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration. OMP:JG abolished osmotaxis 2016-12-20T12:59:07Z A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished. Jesus OMP:0005366 microbial_phenotype A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished. OMP:JG absence of negative osmotaxis 2016-12-20T13:00:12Z An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis. Jesus OMP:0005367 microbial_phenotype An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis. OMP:JG abolished negative osmotaxis 2016-12-20T13:02:31Z A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished. Jesus OMP:0005368 microbial_phenotype A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished. OMP:JG absence of positive osmotaxis 2016-12-20T13:03:16Z A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis. Jesus OMP:0005369 microbial_phenotype A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis. OMP:JG abolished positive osmotaxis 2016-12-20T13:04:08Z A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished. Jesus OMP:0005370 microbial_phenotype A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished. OMP:JG altered osmotaxis 2016-12-20T13:05:17Z An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control. Jesus OMP:0005371 microbial_phenotype An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control. OMP:JG decreased osmotaxis 2016-12-20T13:06:09Z An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control. Jesus OMP:0005372 microbial_phenotype An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control. OMP:JG sporulation frequency phenotype 2016-12-20T13:17:56Z A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions. Jesus OMP:0005373 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions. OMP:JG increased osmotaxis 2016-12-20T13:08:00Z An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control. Jesus OMP:0005374 microbial_phenotype An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control. OMP:JG increased negative osmotaxis 2016-12-20T13:08:34Z An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control. Jesus OMP:0005375 microbial_phenotype An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control. OMP:JG increased positive osmotaxis 2016-12-20T13:09:07Z An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control. Jesus OMP:0005376 microbial_phenotype An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control. OMP:JG sexual sporulation frequency 2016-12-20T13:23:48Z A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions. Jesus OMP:0005377 microbial_phenotype sporulation efficiency APO:0000044 sporulation efficiency A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions. APO:0000044 OMP:JG altered sexual sporulation frequency 2016-12-20T13:27:44Z A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control. Jesus OMP:0005378 altered sexual sporulation efficiency microbial_phenotype A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control. OMP:JG increased sexual sporulation frequency 2016-12-20T13:32:18Z An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control. Jesus OMP:0005379 increased sexual sporulation efficiency microbial_phenotype An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control. OMP:JG decreased sexual sporulation frequency 2016-12-20T13:33:55Z An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control. Jesus OMP:0005380 decreased sexual sporulation efficiency microbial_phenotype An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control. OMP:JG abolished sexual sporulation frequency 2016-12-20T13:35:03Z A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection. Jesus OMP:0005381 abolished sexual sporulation efficiency microbial_phenotype A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection. OMP:JG tail morphology phenotype 2017-11-03T21:07:19Z A virion morphology phenotype that is referring to the form and structure of tails on viral particles. MiLaptop OMP:0005382 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A virion morphology phenotype that is referring to the form and structure of tails on viral particles. OMP:dr presence of tail 2017-11-03T21:10:23Z A tail morphology phenotype where the virus has a tail present. MiLaptop OMP:0005383 microbial_phenotype presence of short tail 2017-11-03T21:15:15Z A tail length phenotype where the maximum length of the tail is 17 nm. MiLaptop OMP:0005384 microbial_phenotype presence of normal tail 2017-11-03T21:17:21Z A tail length phenotype ranging from 18 nm to 109 nm. MiLaptop OMP:0005385 microbial_phenotype capsid morphology phenotype 2017-11-03T21:01:58Z A virion morphology phenotype related to the form and structure of the capsid of the virion. MiLaptop OMP:0005386 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype presence of long tail 2017-11-03T21:19:23Z A tail length phenotype ranging from 110 nm to 300 nm. MiLaptop OMP:0005387 microbial_phenotype presence of contractile tail 2017-11-03T21:20:42Z A phage tail phenotype where the tail contracts to inject its DNA into the host. MiLaptop OMP:0005388 microbial_phenotype presence of non-contractile tail 2017-11-03T21:33:18Z A phage tail phenotype where the tail does not contract to inject its DNA into the host. MiLaptop OMP:0005389 microbial_phenotype presence of a single tail 2017-11-03T21:34:28Z A phage tail phenotype where only one tail per virion is present. MiLaptop OMP:0005390 microbial_phenotype presence of multiple tails 2017-11-03T21:35:33Z A phage tail phenotype where more than one tail per virion is present. MiLaptop OMP:0005391 microbial_phenotype absence of tail 2017-11-03T21:36:16Z A tail morphology phenotype where the virus has no tail. MiLaptop OMP:0005392 microbial_phenotype pseudo tail morphology phenotype 2017-11-03T21:39:58Z A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion. MiLaptop OMP:0005393 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion. OMP:dr polyhedral shape 2017-11-03T21:42:47Z A capsid morphology phenotype where the capsid is shaped like a polyhedron which is a solid formed by plane faces. MiLaptop OMP:0005394 microbial_phenotype icosahedral capsid shape 2017-11-03T21:45:08Z A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces. MiLaptop OMP:0005395 microbial_phenotype A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces. OMP:dr isometric capsid 2017-11-03T21:52:04Z A capsid morphology phenotype where the capsid is shaped isometrically which is a shape that is characterized by equality of measure. MiLaptop OMP:0005396 microbial_phenotype octahedral capsid 2017-11-03T21:53:27Z A capsid morphology phenotype where the capsid is shaped like an octahedron which is a polyhedron with 8 plane faces. MiLaptop OMP:0005397 microbial_phenotype dodecahedral capsid shape 2017-11-03T21:55:20Z A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces. MiLaptop OMP:0005398 microbial_phenotype A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces. OMP:dr secondary metabolite production phenotype 2015-06-09T15:06:53Z A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction. OMP:0006000 microbial_phenotype tkveton A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction. APO:0000292 OMP:TCK altered chromosome segregation 2014-07-24T14:14:37Z A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control. OMP:0006001 jonathanherrera microbial_phenotype A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control. OMP:JCH altered homologous recombination 2014-07-24T15:04:15Z A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control. OMP:0006002 jonathanherrera microbial_phenotype A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control. OMP:JCH altered gene silencing 2014-07-24T15:10:50Z A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control. OMP:0006003 jonathanherrera microbial_phenotype A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control. OMP:JCH increased budding 2014-03-26T21:33:14Z An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control. OMP:0006004 increased budding index jonathanherrera microbial_phenotype An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control. OMP:WAM altered site-specific recombination 2014-07-24T15:21:56Z A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control. OMP:0006005 jonathanherrera microbial_phenotype A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control. OMP:JCH decreased budding 2014-03-26T21:33:14Z An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control. OMP:0006006 decreased budding index jonathanherrera microbial_phenotype An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control. OMP:WAM altered heterocyst formation 2014-07-24T16:24:44Z A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control. OMP:0006007 jonathanherrera microbial_phenotype A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control. OMP:JCH photosynthesis phenotype 2014-04-01T14:18:12Z A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules. OMP:0006008 jonathanherrera microbial_phenotype A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules. OMP:JCH altered myxospore formation 2014-07-24T16:26:38Z A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control. OMP:0006009 jonathanherrera microbial_phenotype A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control. OMP:JCH altered pilus phenotype 2014-07-24T16:28:24Z A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control. OMP:0006010 jonathanherrera microbial_phenotype A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control. OMP:JCH lantibiotic resistance phenotype 2014-04-30T22:47:51Z A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid. OMP:0006011 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. jonathanherrera lantibiotic sensitivity phenotype microbial_phenotype A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid. CHEBI:71644 OMP:WAM decreased resistance to lantibiotic 2014-04-30T22:48:59Z A lantibiotic resistance phenotype where resistance is decreased relative to a designated control. OMP:0006012 increased sensitivity to lantibiotic jonathanherrera microbial_phenotype A lantibiotic resistance phenotype where resistance is decreased relative to a designated control. OMP:WAM altered transposable element transposition phenotype 2014-07-24T16:30:53Z A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control. OMP:0006013 jonathanherrera microbial_phenotype A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control. OMP:JCH increased resistance to lantibiotic 2014-04-30T22:48:59Z A lantibiotic resistance phenotype where resistance is increased relative to a designated control. OMP:0006014 decreased sensitivity to lantibiotic jonathanherrera microbial_phenotype A lantibiotic resistance phenotype where resistance is increased relative to a designated control. OMP:WAM presence of transposable element transposition 2014-07-24T16:34:28Z A transposable element transposition phenotype where a cell or cells have transposition of transposable elements. OMP:0006015 jonathanherrera microbial_phenotype A transposable element transposition phenotype where a cell or cells have transposition of transposable elements. OMP:WAM absence of transposable element transposition 2014-07-24T16:34:28Z A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements. OMP:0006016 jonathanherrera microbial_phenotype A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements. OMP:WAM altered aminoglycoside resistance 2014-07-24T17:04:53Z An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control. OMP:0006017 jonathanherrera microbial_phenotype An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control. OMP:JCH altered aminopyrimidine resistance 2014-07-24T17:13:02Z An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control. OMP:0006018 jonathanherrera microbial_phenotype An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control. OMP:JCH altered azole resistance 2014-07-24T17:20:23Z An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control. OMP:0006019 jonathanherrera microbial_phenotype An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control. OMp:JCH altered bacteriocin resistance 2014-07-24T17:21:28Z A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control. OMP:0006020 jonathanherrera microbial_phenotype A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control. OMP:JCH altered beta-lactam resistance 2014-07-24T17:26:03Z A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control. OMP:0006021 jonathanherrera microbial_phenotype A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control. OMP:JCH nutrient utilization phenotype 2013-09-10T14:40:06Z A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture. OMP:0006022 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. jonathanherrera microbial_phenotype A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture. ISBN:9780073402406 carbon source utilization phenotype 2013-09-10T17:51:21Z A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon. N-acetyl glucosamine OMP:0006023 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. acetate glucosamine glucose glycerol jonathanherrera maltose microbial_phenotype succinate A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon. OMP:DAS presence of organic carbon source utilization 2013-09-10T18:39:02Z A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source. OMP:0006024 heterotrophy jonathanherrera microbial_phenotype A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source. ISBN:9780073402406 OMP:DAS altered chloramphenicol resistance 2014-07-24T17:39:51Z A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control. OMP:0006025 jonathanherrera microbial_phenotype A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control. OMP:JCH nitrogen source utilization phenotype 2013-09-10T17:51:21Z A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen. NH4Cl (ammonia) OMP:0006026 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. jonathanherrera microbial_phenotype A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen. OMP:DAS bacteriocin resistance phenotype 2013-10-04T16:57:43Z An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species. CHEBI:48081 OMP:0006027 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bacteriocin sensitivity phenotype colicins resistance phenotype fusidic acid resistance phenotype iantibiotic resistance phenotype jonathanherrera microbial_phenotype microcin resistance phenotype nisin resistance phenotype subtilin resistance phenotype type A lantibiotic resistance phenotype type B lantibiotic resistance phenotype CHEBI:71647 type B lantibiotic resistance phenotype CHEBI:64627 microcin resistance phenotype bacteriocin CHEBI:48081 Bactibase:BAC045 subtilin resistance phenotype GO:0015468 colicins resistance phenotype CHEBI:29013 fusidic acid resistance phenotype An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species. CHEBI:48081 OMP:JCH ChEBI:71629 nisin resistance phenotype CHEBI:71644 iantibiotic resistance phenotype CHEBI:71645 type A lantibiotic resistance phenotype azole antimicrobial agent resistance phenotype 2013-10-10T19:15:32Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen. CHEBI:68452 OMP:0006028 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen. A mancude ring has the maximum number of noncumulative double bonds, e.g. benzene, indole. azole sensitivity phenotype benomyl resistance phenotype fluconazole resistance phenotype itraconazole resistance phenotype jonathanherrera ketoconazole resistance phenotype miconazole resistance phenotype microbial_phenotype posaconazole resistance phenotype thiabendazole resistance phenotype triazole resistance phenotype voriconazole resistance phenotype azole CHEBI:68452 CHEBI:6923 miconazole resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen. CHEBI:68452 OMP:DAS CHEBI:45979 thiabendazole resistance phenotype CHEBI:46081 fluconazole resistance phenotype CHEBI:47519 ketoconazole resistance phenotype CHEBI:6076 itraconazole resistance phenotype CHEBI:10023 voriconazole resistance phenotype CHEBI:3015 benomyl resistance phenotype CHEBI:38597 triazole resistance phenotype CHEBI:64355 posaconazole resistance phenotype quinolone resistance phenotype 2013-10-10T19:15:32Z An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure. CHEBI:23765 OMP:0006029 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Quinolones are a class of quinolines, which are aromatic heterocyclic compounds that contain a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring. ciprofloxacin resistance phenotype dibucaine resistance phenotype doxorubicin resistance phenotype jonathanherrera levofloxacin resistance phenotype microbial_phenotype nalidixic acid resistance phenotype norfloxacin resistance phenotype quinolines quinolone sensitivity phenotype streptonigrin CHEBI:28748 doxorubicin resistance phenotype CHEBI:247956 dibucaine resistance phenotype CHEBI:63598 levofloxacin resistance phenotype CHEBI:100241 ciprofloxacin resistance phenotype An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure. CHEBI:23765 OMP:JCH CHEBI:100246 norfloxacin resistance phenotype CHEBI:26513 quinolines CHEBI:100147 nalidixic acid resistance phenotype quinolone CHEBI:23765 CHEBI:9287 streptonigrin dinitrogen utilization phenotype 2013-09-10T17:54:07Z A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen. OMP:0006030 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. diatomic nitrogen utilization phenotype jonathanherrera microbial_phenotype nitrogen fixation phenotype A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen. OMP:DAS altered resistance to macrolide 2014-07-24T17:40:33Z A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control. OMP:0006031 jonathanherrera microbial_phenotype A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control. OMP:JCH altered pteridine resistance 2014-07-24T17:42:30Z A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control. OMP:0006032 jonathanherrera microbial_phenotype A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control. OMP:JCH altered lifespan phenotype 2014-07-24T17:52:43Z An lifespan phenotype that is altered relative to a designated control. OMP:0006033 jonathanherrera microbial_phenotype An lifespan phenotype that is altered relative to a designated control. OMP:JCH altered stress-induced mutagenesis 2014-07-24T17:57:37Z A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control. OMP:0006034 jonathanherrera microbial_phenotype A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control. OMP:JCH altered budding 2014-07-24T18:10:38Z A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control. OMP:0006035 jonathanherrera microbial_phenotype A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control. OMP:JCH decreased resistance to macrolide 2013-10-11T17:35:04Z A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control. OMP:0006036 increased sensitivity to macrolide jonathanherrera microbial_phenotype A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control. OMP:JCH increased resistance to macrolide 2013-10-11T17:35:04Z A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control. OMP:0006037 decreased sensitivity to macrolide jonathanherrera microbial_phenotype A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control. OMP:JCH not resistant to macrolide 2013-10-11T17:35:04Z A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds. OMP:0006038 jonathanherrera microbial_phenotype sensitivity to macrolide A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds. OMP:JCH resistant to macrolide 2013-10-11T17:35:04Z A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds. OMP:0006039 jonathanherrera microbial_phenotype A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds. OMP:JCH decreased resistance to quinolone 2013-10-11T17:38:00Z A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control. OMP:0006040 increased sensitivity to quinoline jonathanherrera microbial_phenotype A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control. OMP:JCH increased resistance to quinolone 2013-10-11T17:38:00Z A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control. OMP:0006041 decreased sensitivity to quinoline jonathanherrera microbial_phenotype A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control. OMP:JCH not resistant to quinolone 2013-10-11T17:38:00Z A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds. OMP:0006042 jonathanherrera microbial_phenotype sensitivity to quinolone A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds. OMp:JCH resistant to quinolone 2013-10-11T17:38:00Z A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds. OMP:0006043 jonathanherrera microbial_phenotype A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds. OMP:JCH decreased resistance to beta-lactam 2013-10-11T17:40:34Z A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control. OMP:0006044 increased sensitivity to beta-lactam jonathanherrera microbial_phenotype A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control. OMP:JCH increased resistance to beta-lactam compound 2013-10-11T17:40:34Z A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control. OMP:0006045 decreased sensitivity to beta-lactam jonathanherrera microbial_phenotype A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control. OMP:JCH not resistant to beta-lactam 2013-10-11T17:40:34Z A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds. OMP:0006046 beta-lactam sensitivity jonathanherrera microbial_phenotype A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds. OMP:JCH resistant to beta-lactam 2013-10-11T17:40:34Z An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds. OMP:0006047 jonathanherrera microbial_phenotype An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds. OMP:JCH decreased resistance to bacteriocin 2013-10-11T17:44:39Z An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control. OMP:0006048 increased sensitivity to bacteriocin jonathanherrera microbial_phenotype An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control. OMP:JCH increased resistance to bacteriocin 2013-10-11T17:44:39Z A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control. OMP:0006049 decreased sensitivity to a bacteriocin jonathanherrera microbial_phenotype A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control. OMP:JCH not resistant to bacteriocin 2013-10-11T17:44:39Z A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins. OMP:0006050 bacteriocin sensitivity jonathanherrera microbial_phenotype A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins. OMP:JCH resistant to bacteriocin 2013-10-11T17:44:39Z A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins. OMP:0006051 jonathanherrera microbial_phenotype A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins. OMP:JCH decreased resistance to azole 2013-10-11T17:45:44Z An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control. OMP:0006052 increased sensitivity to azole jonathanherrera microbial_phenotype An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control. OMP:DAS increased resistance to azole compound 2013-10-11T17:45:44Z An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control. OMP:0006053 decreased sensitivity to azole jonathanherrera microbial_phenotype An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control. OMP:DAS not resistant to azole 2013-10-11T17:45:44Z An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds. OMP:0006054 azole sensitivity jonathanherrera microbial_phenotype An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds. OMP:DAS resistant to azole 2013-10-11T17:45:44Z An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds. OMP:0006055 jonathanherrera microbial_phenotype An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds. OMP:DAS aminoglycoside antimicrobial agent resistance phenotype 2013-10-22T13:29:22Z An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars. CHEBI:47779 OMP:0006056 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. amikacin resistance phenotype aminoglycoside sensitivity phenotype gentamicin resistance phenotype hygromycin B resistance phenotype jonathanherrera kanamycin resistance phenotype microbial_phenotype neomycin resistance phenotype spectinomycin resistance phenotype streptomycin resistance phenotype tobramycin resistance phenotype CHEBI:2673 amikacin resistance phenotype CHEBI:16976 hygromycin B resistance phenotype CHEBI:17076 streptomycin resistance phenotype CHEBI:6104 kanamycin resistance phenotype CHEBI:28864 tobramycin resistance phenotype CHEBI:32158 spectinomycin resistance phenotype CHEBI:5312 gentamicin resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars. CHEBI:47779 OMP:JCH CHEBI:7508 neomycin resistance phenotype aminoglycoside CHEBI:47779 decreased resistance to aminoglycoside 2013-10-22T19:24:20Z An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control. OMP:0006057 increased sensitivity to aminoglycoside jonathanherrera microbial_phenotype An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control. OMP:JCH increased resistance to aminoglycoside 2013-10-22T19:24:20Z An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control. OMP:0006058 decreased sensitivity to aminoglycoside jonathanherrera microbial_phenotype An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control. OMP:JCH not resistant to aminoglycoside 2013-10-22T19:24:20Z An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides. OMP:0006059 aminoglycoside sensitivity jonathanherrera microbial_phenotype An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides. OMP:JCH resistant to aminoglycoside 2013-10-22T19:24:20Z An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds. OMP:0006060 jonathanherrera microbial_phenotype An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds. OMP:JCH decreased resistance to tetracycline 2013-10-23T19:27:35Z A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control. OMP:0006061 increased sensitivity to tetracycline jonathanherrera microbial_phenotype A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control. OMP:JCH tetracycline resistance phenotype 2013-10-23T17:21:25Z An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton. CHEBI:27902 OMP:0006062 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bacteriostatic resistance phenotype chlortetracycline resistance phenotype doxycycline resistance phenotype jonathanherrera microbial_phenotype minocycline resistance phenotype oxytetracycline resistance phenotype tetracycline sensitivity phenotype An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton. CHEBI:27902 OMP:JCH CHEBI:50845 doxycycline resistance phenotype CHEBI:27701 oxytetracycline resistance phenotype CHEBI:50694 minocycline resistance phenotype increased resistance to tetracycline 2013-10-23T19:27:35Z A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control. OMP:0006063 decreased sensitivity to tetracycline jonathanherrera microbial_phenotype A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control. OMP:JCH not resistant to tetracycline 2013-10-23T19:27:35Z A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines. OMP:0006064 jonathanherrera microbial_phenotype sensitivity to tetracycline A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines. OMP:JCH resistant to tetracycline 2013-10-23T19:27:35Z A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds. OMP:0006065 jonathanherrera microbial_phenotype A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds. OMP:JCH chloramphenicol resistance phenotype 2013-10-24T12:57:25Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions. CHEBI:17698 OMP:0006066 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chloramphenicol sensitivity phenotype jonathanherrera microbial_phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions. CHEBI:17698 OMP:JCH chloramphenicol CHEBI:17698 decreased resistance to chloramphenicol 2013-10-24T19:41:11Z A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control. OMP:0006067 increased sensitivity to chloramphenicol jonathanherrera microbial_phenotype A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control. OMP:JCH increased resistance to chloramphenicol 2013-10-24T19:41:11Z A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control. OMP:0006068 decreased sensitivity to chloramphenicol jonathanherrera microbial_phenotype A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control. OMP:JCH not resistant to chloramphenicol 2013-10-24T19:41:11Z A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol. OMP:0006069 chloramphenicol sensitivity jonathanherrera microbial_phenotype A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol. OMP:JCH resistant to chloramphenicol 2013-10-24T19:41:11Z A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol. OMP:0006070 jonathanherrera microbial_phenotype A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol. OMP:JCH altered mutation frequency 2014-07-24T18:18:59Z A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control. OMP:0006071 jonathanherrera microbial_phenotype A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control. OMP:JCH not resistant to lantibiotic 2014-04-30T22:48:59Z A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics. OMP:0006072 jonathanherrera microbial_phenotype sensitive to lantibiotic A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics. OMP:WAM resistant to lantibiotic 2014-04-30T22:48:59Z A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds. OMP:0006073 jonathanherrera microbial_phenotype A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds. OMP:WAM increased resistance to pteridine 2014-05-12T13:04:39Z A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control. OMP:0006074 decreased sensitivity to pteridine jonathanherrera microbial_phenotype A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control. CHEBI:27601 OMP:DAS not resistant to pteridine 2014-05-12T13:04:40Z A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds. OMP:0006075 jonathanherrera microbial_phenotype sensitivity to pteridine A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds. CHEBI:27601 OMP:JCH resistant to pteridine 2014-05-12T13:04:40Z A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds. OMP:0006076 jonathanherrera microbial_phenotype A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds. CHEBI:27601 OMP:JCH altered catalase test result 2014-07-15T14:55:03Z A catalase test phenotype where catalase activity is altered relative to a designated control. OMP:0006077 jonathanherrera microbial_phenotype A catalase test phenotype where catalase activity is altered relative to a designated control. OMP:JCH decarboxylase negative 2014-07-15T19:59:58Z A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity. OMP:0006078 jonathanherrera microbial_phenotype A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity. OMP:JCH altered decarboxylase test result 2014-07-15T19:59:58Z A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control. OMP:0006079 jonathanherrera microbial_phenotype A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control. OMP:JCH decarboxylase positive 2014-07-15T19:59:58Z A decarboxylase test phenotype where an organism exhibits decarboxylase activity. OMP:0006080 jonathanherrera microbial_phenotype A decarboxylase test phenotype where an organism exhibits decarboxylase activity. OMP:JCH increased decarboxylase activity 2014-07-15T20:00:41Z An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control. OMP:0006081 jonathanherrera microbial_phenotype An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control. OMP:JCH decreased decarboxylase activity 2014-07-15T20:00:41Z An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control. OMP:0006082 jonathanherrera microbial_phenotype An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control. OMP:JCH altered oxidase test result 2014-07-15T20:06:25Z An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control. OMP:0006083 jonathanherrera microbial_phenotype An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control. OMP:JCH oxidase negative 2014-07-15T20:06:25Z An oxidase test phenotype where an organism doesn't exhibit oxidase activity. OMP:0006084 jonathanherrera microbial_phenotype oxidase deficient An oxidase test phenotype where an organism doesn't exhibit oxidase activity. OMP:JCH oxidase positive 2014-07-15T20:06:25Z An oxidase test phenotype where an organism exhibits oxidase activity. OMP:0006085 jonathanherrera microbial_phenotype An oxidase test phenotype where an organism exhibits oxidase activity. OMP:JCH increased oxidase activity 2014-07-15T20:06:48Z An altered oxidase test phenotype where oxidase activity is increased relative to a designated control. OMP:0006086 jonathanherrera microbial_phenotype An altered oxidase test phenotype where oxidase activity is increased relative to a designated control. OMP:JCH decreased oxidase activity 2014-07-15T20:06:48Z An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control. OMP:0006087 jonathanherrera microbial_phenotype An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control. OMP:JCH altered urease test result 2014-07-15T20:07:31Z A urease test phenotype where urease activity is altered relative to a designated control. OMP:0006088 jonathanherrera microbial_phenotype A urease test phenotype where urease activity is altered relative to a designated control. OMP:JCH urease positive 2014-07-15T20:07:31Z A urease test phenotype where an organism exhibits urease activity. OMP:0006089 jonathanherrera microbial_phenotype A urease test phenotype where an organism exhibits urease activity. OMP:JCH urease negative 2014-07-15T20:07:31Z A urease test phenotype where an organism doesn't exhibit urease activity. OMP:0006090 jonathanherrera microbial_phenotype urease deficient A urease test phenotype where an organism doesn't exhibit urease activity. OMP:JCH increased urease activity 2014-07-15T20:07:54Z An altered urease activity phenotype where urease activity is increased relative to a designated control. OMP:0006091 jonathanherrera microbial_phenotype An altered urease activity phenotype where urease activity is increased relative to a designated control. OMP:JCH decreased urease activity 2014-07-15T20:07:54Z An altered urease activity phenotype where there urease activity is decreased relative to a designated control. OMP:0006092 jonathanherrera microbial_phenotype An altered urease activity phenotype where there urease activity is decreased relative to a designated control. OMP:JCH altered quorum sensing phenotype 2014-07-24T18:43:39Z A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control. OMP:0006093 jonathanherrera microbial_phenotype A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control. OMP:JCH abolished decarboxylase activity 2014-07-24T20:05:39Z A decreased decarboxylase activity phenotype where decarboxylase activity is abolished. OMP:0006094 jonathanherrera microbial_phenotype A decreased decarboxylase activity phenotype where decarboxylase activity is abolished. OMP:JCH abolished enzymatic activity 2014-07-24T20:09:28Z A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished. OMP:0006095 jonathanherrera microbial_phenotype A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished. OMP:JCH abolished oxidase activity 2014-07-24T20:11:44Z A decreased oxidase activity phenotype where oxidase activity is abolished. OMP:0006096 jonathanherrera microbial_phenotype A decreased oxidase activity phenotype where oxidase activity is abolished. OMP:JCH abolished urease activity 2014-07-24T20:17:01Z A decreased urease activity phenotype where urease activity is abolished. OMP:0006097 jonathanherrera microbial_phenotype A decreased urease activity phenotype where urease activity is abolished. OMP:JCH abolished aerotaxis 2014-07-24T20:18:01Z A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished. OMP:0006098 jonathanherrera microbial_phenotype A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished. OMP:JCH abolished budding 2014-07-25T11:08:59Z A decreased budding phenotype where the fraction of budding cells is decreased to zero. OMP:0006099 jonathanherrera microbial_phenotype A decreased budding phenotype where the fraction of budding cells is decreased to zero. OMP:JCH abolished motility by swimming 2014-08-15T19:12:43Z A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished. OMP:0006100 jonathanherrera microbial_phenotype A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished. OMP:JCH abolished caffeine resistance 2014-07-25T11:40:57Z A caffeine resistance phenotype where resistance to caffeine is abolished. OMP:0006101 jonathanherrera microbial_phenotype A caffeine resistance phenotype where resistance to caffeine is abolished. OMP:JCH abolished capsule formation 2014-07-25T11:52:24Z A decreased amount of capsule phenotype where capsule is abolished. OMP:0006102 jonathanherrera microbial_phenotype A decreased amount of capsule phenotype where capsule is abolished. OMP:JCH abolished organic carbon source utilization 2014-07-25T11:54:11Z A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished. OMP:0006103 jonathanherrera microbial_phenotype A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished. OMP:JCH abolished catalase activity 2014-07-25T11:59:12Z A decreased catalase activity phenotype where catalase activity is abolished. OMP:0006104 jonathanherrera microbial_phenotype A decreased catalase activity phenotype where catalase activity is abolished. OMP:JCH antimicrobial peptide production phenotype 2015-06-09T15:14:37Z A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa. OMP:0006105 microbial_phenotype tkveton A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa. GO:0000276 OMP:TCK altered antimicrobial peptide production 2015-06-09T15:16:13Z An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control. OMP:0006106 microbial_phenotype tkveton An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control. OMP:TCK presence of outer membrane vesicles 2014-07-28T18:19:45Z A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles. OMP:0006107 jonathanherrera microbial_phenotype vesiculation A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles. OMP:JCH abolished chemotaxis 2014-07-25T12:11:10Z A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished. OMP:0006108 jonathanherrera microbial_phenotype A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished. OMP:JCH absence of outer membrane vesicles 2014-07-28T18:19:45Z A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles. OMP:0006109 jonathanherrera microbial_phenotype A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles. OMP:JCH abolished endospore formation 2014-07-25T12:21:50Z A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished. OMP:0006110 jonathanherrera microbial_phenotype A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished. OMP:JCH abolished chromosome segregation 2014-07-25T12:24:27Z A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished. OMP:0006111 jonathanherrera microbial_phenotype A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished. OMP:JCH abolished gene silencing 2014-07-25T12:40:10Z A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished. OMP:0006112 jonathanherrera microbial_phenotype A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished. OMP:JCH abolished homologous recombination 2014-07-25T12:45:20Z A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished. OMP:0006113 jonathanherrera microbial_phenotype A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished. OMP:JCH abolished site-specific recombination 2014-07-25T12:47:43Z A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished. OMP:0006114 jonathanherrera microbial_phenotype A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished. OMP:JCH abolished gene expression 2014-07-25T12:50:04Z A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control. OMP:0006115 jonathanherrera microbial_phenotype A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control. OMP:JCH abolished population growth at acidic pH 2014-07-25T12:58:01Z An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished. OMP:0006116 jonathanherrera microbial_phenotype An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished. OMP:DAS abolished population growth at alkaline pH 2014-07-25T13:02:17Z An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished. OMP:0006117 jonathanherrera microbial_phenotype An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished. OMP:JCH decreased antimicrobial peptide production 2015-06-09T15:17:23Z An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control. OMP:0006118 microbial_phenotype tkveton An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control. OMP:TCK abolished hemolysis 2014-07-25T13:17:12Z A decreased hemolysis phenotype where hemolysis is abolished. OMP:0006119 jonathanherrera microbial_phenotype A decreased hemolysis phenotype where hemolysis is abolished. OMP:JCH abolished heterocyst formation 2014-07-25T13:19:17Z A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished. OMP:0006120 jonathanherrera microbial_phenotype A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished. OMP:JCH abolished induced expression of the SOS response 2014-07-25T13:22:37Z A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished. OMP:0006121 jonathanherrera microbial_phenotype A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished. OMP:JCH abolished uninduced expression of the SOS response 2014-07-25T13:24:16Z A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished. OMP:0006122 jonathanherrera microbial_phenotype A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished. OMP:JCH abolished mitotic recombination 2014-07-25T13:27:32Z A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished. OMP:0006123 jonathanherrera microbial_phenotype A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished. OMP:JCH abolished mutation frequency 2014-07-25T14:05:31Z A decreased mutation frequency phenotype where mutations no longer occur. **This term was made obsolete because it describes a phenotype that is unlikely to occur in nature. OMP:0006124 This term was made obsolete because it describes a phenotype that is unlikely to occur in nature. jonathanherrera microbial_phenotype true A decreased mutation frequency phenotype where mutations no longer occur. **This term was made obsolete because it describes a phenotype that is unlikely to occur in nature. OMP:JCH abolished myxospore formation 2014-07-25T14:07:02Z A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished. OMP:0006125 jonathanherrera microbial_phenotype A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished. OMP:JCH altered DNA supercoiling 2014-07-25T14:11:37Z A DNA supercoiling phenotype where supercoiling is altered relative to a designated control. OMP:0006126 jonathanherrera microbial_phenotype A DNA supercoiling phenotype where supercoiling is altered relative to a designated control. OMP:JCH abolished negative DNA supercoiling 2014-07-25T14:16:09Z A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished. OMP:0006127 jonathanherrera microbial_phenotype A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished. OMP:JCH abolished positive DNA supercoiling 2014-07-25T14:16:27Z A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished. OMP:0006128 jonathanherrera microbial_phenotype A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished. OMP:JCH absence of negative supercoiling 2014-07-25T14:32:08Z A DNA supercoiling phenotype where negative supercoiling is absent. OMP:0006129 jonathanherrera microbial_phenotype A DNA supercoiling phenotype where negative supercoiling is absent. OMP:JCH absence of positive supercoiling 2014-07-25T14:32:42Z A DNA supercoiling phenotype where positive supercoiling is absent. OMP:0006130 jonathanherrera microbial_phenotype A DNA supercoiling phenotype where positive supercoiling is absent. OMP:JCH abolished flagella 2014-07-25T14:43:31Z A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero. OMP:0006131 jonathanherrera microbial_phenotype A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero. OMP:JCH abolished number of pili 2014-07-25T14:46:12Z A decreased number of pili phenotype where the number of pili is decreased to zero. OMP:0006132 jonathanherrera microbial_phenotype A decreased number of pili phenotype where the number of pili is decreased to zero. OMP:JCH abolished purine requirement 2014-07-25T14:47:24Z A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished. OMP:0006133 jonathanherrera microbial_phenotype A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished. OMP:JCH abolished quorum sensing 2014-07-25T14:49:11Z A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished. OMP:0006134 jonathanherrera microbial_phenotype A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished. OMP:JCH abolished biofilm formation 2014-07-25T14:50:55Z A decreased biofilm formation phenotype where the ability to form a biofilm is abolished. OMP:0006135 jonathanherrera microbial_phenotype A decreased biofilm formation phenotype where the ability to form a biofilm is abolished. OMP:JCH abolished transposition 2014-07-25T14:52:06Z A decreased rate of transposition phenotype where the ability to perform transposition is abolished. OMP:0006136 jonathanherrera microbial_phenotype A decreased rate of transposition phenotype where the ability to perform transposition is abolished. OMP:JCH abolished resistance to aminoglycoside 2014-07-25T14:54:43Z A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished. OMP:0006137 jonathanherrera microbial_phenotype A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished. OMP:JCH abolished resistance to aminopyrimidine 2014-07-25T14:59:06Z A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished. OMP:0006138 jonathanherrera microbial_phenotype A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished. OMP:JCH abolished resistance to azole 2014-07-25T15:00:48Z A decreased resistance to azole phenotype where resistance to azole is abolished. OMP:0006139 jonathanherrera microbial_phenotype A decreased resistance to azole phenotype where resistance to azole is abolished. OMP:JCH abolished resistance to bacteriocin 2014-07-25T15:02:13Z A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished. OMP:0006140 jonathanherrera microbial_phenotype A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished. OMP:JCH abolished resistance to beta-lactam 2014-07-25T15:04:08Z A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished. OMP:0006141 jonathanherrera microbial_phenotype A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished. OMP:JCh abolished resistance to chloramphenicol 2014-07-25T15:05:24Z A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished. OMP:0006142 jonathanherrera microbial_phenotype A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished. OMP:JCH abolished resistance to lantibiotic 2014-07-25T15:07:57Z A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished. OMP:0006143 jonathanherrera microbial_phenotype A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished. OMP:JCh abolished resistance to macrolide 2014-07-25T15:09:24Z A decreased resistance to macrolide phenotype where resistance to macrolides is abolished. OMP:0006144 jonathanherrera microbial_phenotype A decreased resistance to macrolide phenotype where resistance to macrolides is abolished. OMP:JCH abolished resistance to pteridine 2014-07-25T15:11:04Z A decreased resistance to pteridine phenotype where resistance to pteridine is abolished. OMP:0006145 jonathanherrera microbial_phenotype A decreased resistance to pteridine phenotype where resistance to pteridine is abolished. OMP:JCH abolished resistance to quinolone 2014-07-25T15:12:28Z A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished. OMP:0006146 jonathanherrera microbial_phenotype A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished. OMP:JCH abolished resistance to tetracycline 2014-07-25T15:18:09Z A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished. OMP:0006147 jonathanherrera microbial_phenotype A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished. OMP:JCH abolished stress-induced mutagenesis 2014-07-25T15:19:48Z A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished. OMP:0006148 jonathanherrera microbial_phenotype A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished. OMP:JCH abolished utilization of dinitrogen 2014-07-25T15:22:06Z A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished. OMP:0006149 jonathanherrera microbial_phenotype A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished. OMP:JCH abolished utilization of inorganic nitrogen 2014-07-25T15:23:03Z A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen. OMP:0006150 jonathanherrera microbial_phenotype A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen. OMP:JCH abolished utilization of inorganic phosphorus 2014-07-25T15:31:15Z A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished. OMP:0006151 jonathanherrera microbial_phenotype A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished. OMP:JCH abolished utilization of inorganic sulfur 2014-07-25T15:33:11Z A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished. OMP:0006152 jonathanherrera microbial_phenotype A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished. OMP:JCH abolished utilization of organic nitrogen 2014-07-25T15:36:09Z An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished. OMP:0006153 jonathanherrera microbial_phenotype An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished. OMP:JCH abolished utilization of organic phosphorus 2014-07-25T15:37:42Z A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished. OMP:0006154 jonathanherrera microbial_phenotype A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished. OMP:JCH abolished utilization of organic sulfur 2014-07-25T15:40:13Z A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished. OMP:0006155 jonathanherrera microbial_phenotype A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished. OMP:JCH altered outer membrane vesicles 2014-07-28T18:44:09Z An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control. OMP:0006156 jonathanherrera microbial_phenotype An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control. OMP:JCH abolished vitamin/enzyme cofactor requirement 2014-07-25T15:43:18Z A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished. OMP:0006157 jonathanherrera microbial_phenotype A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished. OMP:JCH increased outer membrane vesicle production 2014-07-28T18:45:05Z An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control. OMP:0006158 hyper-vesiculating jonathanherrera microbial_phenotype An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control. OMP:JCH decreased outer membrane vesicle production 2014-07-28T18:45:05Z An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control. OMP:0006159 jonathanherrera microbial_phenotype An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control. OMP:JCH abolished outer membrane vesicle 2014-07-28T20:49:39Z A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished. OMP:0006160 jonathanherrera microbial_phenotype A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished. OMP:JCH altered endospore formation 2014-07-29T15:37:45Z A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control. OMP:0006161 jonathanherrera microbial_phenotype A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control. OMP:JCH altered nanotube phenotype 2014-07-29T18:03:06Z A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control. OMP:0006162 jonathanherrera microbial_phenotype A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control. OMP:JCH presence of heme utilization 2014-08-05T13:35:01Z A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron. OMP:0006163 jonathanherrera microbial_phenotype A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron. OMP:JCH altered colony size phenotype 2014-08-05T13:44:09Z An colony size phenotype where size is altered relative to a designated control. OMP:0006164 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. jonathanherrera microbial_phenotype An colony size phenotype where size is altered relative to a designated control. OMP:JCH cylindrical akinete 2014-08-06T17:30:58Z An akinete morphology phenotype where the organism forms a cylindrical akinete. OMP:0006165 jonathanherrera microbial_phenotype An akinete morphology phenotype where the organism forms a cylindrical akinete. OMP:JCH presence of binary fission 2014-08-08T15:51:18Z A binary fission phenotype where an organism multiplies by the process of binary fission. OMP:0006166 jonathanherrera microbial_phenotype A binary fission phenotype where an organism multiplies by the process of binary fission. OMP:JCH abolished motility by swarming 2014-08-13T17:25:47Z A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished. OMP:0006167 jonathanherrera microbial_phenotype A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished. OMP:JCH altered binary fission 2014-08-08T15:59:42Z A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control. OMP:0006168 jonathanherrera microbial_phenotype A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control. OMP:JCH increased binary fission 2014-08-08T16:01:46Z An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control. OMP:0006169 jonathanherrera microbial_phenotype An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control. OMP:JCH decreased binary fission 2014-08-08T16:01:46Z An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control. OMP:0006170 jonathanherrera microbial_phenotype An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control. OMP:JCH abolished binary fission 2014-08-08T16:01:54Z A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished. OMP:0006171 jonathanherrera microbial_phenotype A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished. OMP:JCH increased antimicrobial peptide production 2015-06-09T15:17:53Z An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control. OMP:0006172 microbial_phenotype tkveton An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control. OMP:TCK presence of multiple fission 2014-08-08T16:42:12Z A multiple fission phenotype where an organism reproduces by the process of multiple fission. OMP:0006173 jonathanherrera microbial_phenotype A multiple fission phenotype where an organism reproduces by the process of multiple fission. OMP:JCH altered multiple fission 2014-08-08T16:42:12Z A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control. OMP:0006174 jonathanherrera microbial_phenotype A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control. OMP:JCH decreased multiple fission 2014-08-08T16:46:45Z An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control. OMP:0006175 jonathanherrera microbial_phenotype An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control. OMP:JCH increased multiple fission 2014-08-08T16:46:45Z An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control. OMP:0006176 jonathanherrera microbial_phenotype An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control. OMP:JCH abolished multiple fission 2014-08-08T16:49:27Z A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished. OMP:0006177 jonathanherrera microbial_phenotype A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished. OMP:JCH abolished antimicrobial peptide production 2015-06-09T15:18:24Z An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished. OMP:0006178 microbial_phenotype tkveton An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished. OMP:TCK presence of antimicrobial peptide production 2015-06-09T15:19:02Z An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide. OMP:0006179 microbial_phenotype tkveton An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide. OMP:TCK absence of antimicrobial peptide production 2015-06-09T15:19:38Z An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide. OMP:0006180 microbial_phenotype tkveton An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide. OMP:TCK abolished motility 2014-06-29T14:10:40Z A decreased motility phenotype where the ability of a microbe to be motile is abolished. OMP:0007000 microbial_phenotype siegele A decreased motility phenotype where the ability of a microbe to be motile is abolished. OMP:JCH altered motility 2014-04-24T17:38:06Z A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control. OMP:0007001 microbial_phenotype siegele A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control. OMP:DAS decreased positive supercoiling 2013-09-05T16:08:29Z An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control. OMP:0007002 microbial_phenotype siegele An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control. OMP:WAM increased positive supercoiling 2013-09-05T16:09:28Z An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control. OMP:0007003 microbial_phenotype siegele An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control. OMP:WAM decreased resistance to pteridine 2014-01-31T18:03:55Z A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control. DeborahSiegele OMP:0007004 increased sensitivity to pteridine microbial_phenotype A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control. CHEBI:27601 OMP:DAS decreased negative chemotaxis 2014-08-07T18:35:51Z A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control. OMP:0007005 dsiegele microbial_phenotype A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS population phenotype 2014-07-21T10:25:43Z A microbial phenotype where the phenotype is observed at the level of a microbial population. OBI:0000181 OMP:0007006 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype where the phenotype is observed at the level of a microbial population. OMP:DAS population OBI:0000181 nutrient import phenotype 2014-07-31T16:11:22Z A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment. GO:0098657 OMP:0007007 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment. OMP:DAS import into cell GO:0098657 decreased population growth at acidic pH 2013-09-11T17:11:01Z An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control. OMP:0007008 microbial_phenotype siegele An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control. OMP:DAS increased population growth at acidic pH 2013-09-11T17:11:44Z An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control. OMP:0007009 microbial_phenotype siegele An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control. OMP:DAS decreased population growth at alkaline pH 2013-09-11T17:14:28Z An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control. OMP:0007010 microbial_phenotype siegele An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control. OMP:DAS increased population growth at alkaline pH 2013-09-11T17:14:56Z An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control. OMP:0007011 microbial_phenotype siegele An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control. OMP:DAS presence of inorganic carbon source utilization 2013-09-13T15:10:16Z A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source. OMP:0007012 autotrophy microbial_phenotype siegele A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source. ISBN:9780073402406 OMP:DAS inorganic nitrogen source utilization phenotype 2013-09-13T15:19:33Z A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen. OMP:0007013 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype nitrate utilization, phenotype siegele A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen. OMP:DAS organic nitrogen source utilization phenotype 2013-09-13T15:20:24Z A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen. OMP:0007014 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen. OMP:DAS altered nutrient import phenotype 2014-07-31T16:16:15Z A nutrient uptake phenotype that is altered relative to a designated control. OMP:0007015 microbial_phenotype siegele A nutrient uptake phenotype that is altered relative to a designated control. OMP:DAS decreased nutrient import 2014-07-31T16:16:52Z An altered nutrient import phenotype where import is decreased relative to a designated control. OMP:0007016 microbial_phenotype siegele An altered nutrient import phenotype where import is decreased relative to a designated control. OMP:DAS abolished nutrient import 2014-07-31T16:18:02Z A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished. OMP:0007017 microbial_phenotype siegele A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished. OMP:DAS does not require growth factor(s) 2013-09-16T17:29:19Z A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals. OMP:0007018 microbial_phenotype prototroph prototrophic siegele A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals. OMP:DAS increased amino acid requirement 2013-09-16T17:30:07Z An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control. OMP:0007019 microbial_phenotype siegele An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control. OMP:DAS increased biofilm formation 2014-08-01T00:12:56Z An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control. OMP:0007020 microbial_phenotype siegele An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control. OMP:DAS decreased amino acid requirement 2013-09-17T16:13:20Z An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control. OMP:0007021 microbial_phenotype siegele An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control. OMP:DAS decreased purine requirement 2013-09-17T16:30:10Z An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. OMP:0007022 microbial_phenotype siegele An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. OMP:DAS increased purine requirement 2013-09-17T16:30:36Z An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. OMP:0007023 microbial_phenotype siegele An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. OMP:DAS increased vitamin/enzyme cofactor requirement 2013-09-17T16:31:05Z A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control. OMP:0007024 microbial_phenotype siegele A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control. OMP:DAS decreased vitamin/enzyme cofactor requirement 2013-09-17T16:33:34Z A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control. OMP:0007025 microbial_phenotype siegele A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control. OMP:DAS decreased biofilm formation 2014-08-01T00:12:56Z An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control. OMP:0007026 microbial_phenotype siegele An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control. OMP:DAS increased quorum sensing 2013-09-17T16:45:02Z A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control. OMP:0007027 microbial_phenotype siegele A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control. OMP:DAS decreased quorum sensing 2013-09-17T16:45:18Z An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control. OMP:0007028 microbial_phenotype siegele An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control. OMP:DAS decreased utilization of dinitrogen 2013-09-28T20:59:52Z A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control. DeborahSiegele OMP:0007029 microbial_phenotype A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control. OMP:DAS increased utilization of dinitrogen 2013-09-28T21:02:26Z A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control. DeborahSiegele OMP:0007030 microbial_phenotype A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control. OMP:DAS presence of dinitrogen utilization 2013-09-28T21:02:26Z A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen. DeborahSiegele OMP:0007031 microbial_phenotype A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen. OMP:DAS decreased utilization of inorganic nitrogen source 2013-09-28T21:03:56Z An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control. DeborahSiegele OMP:0007032 microbial_phenotype An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control. OMP:DAS increased utilization of inorganic nitrogen source 2013-09-28T21:05:18Z An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control. DeborahSiegele OMP:0007033 microbial_phenotype An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control. OMP:DAS utilization of inorganic nitrogen phenotype 2013-09-28T21:05:43Z An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source. DeborahSiegele OMP:0007034 microbial_phenotype An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source. OMP:DAS decreased organic nitrogen source utilization 2013-09-28T21:07:53Z An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control. DeborahSiegele OMP:0007035 microbial_phenotype An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control. OMP:DAS increased organic nitrogen source utilization 2013-09-28T21:07:58Z An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control. DeborahSiegele OMP:0007036 microbial_phenotype An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control. OMP:DAS utilization of organic nitrogen phenotype 2013-09-28T21:08:02Z An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen. DeborahSiegele OMP:0007037 microbial_phenotype true An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen. OMP:DAS amino acid requirement 2013-09-29T00:27:05Z A growth factor requirement phenotype where the required growth factor is one or more amino acids. DeborahSiegele OMP:0007038 homocysteine requirement isoleucine requirement methionine requirement microbial_phenotype valine requirement CHEBI:27266 valine requirement A growth factor requirement phenotype where the required growth factor is one or more amino acids. OMP:DAS CHEBI:24898 isoleucine requirement CHEBI:17230 homocysteine requirement CHEBI:16811 methionine requirement purine requirement 2013-09-29T00:33:05Z A requires growth factor(s) phenotype where the required growth factor is a purine base. DeborahSiegele OMP:0007039 adenine requirement microbial_phenotype A requires growth factor(s) phenotype where the required growth factor is a purine base. OMP:DAS CHEBI:16708 adenine requirement vitamin/enzyme cofactor requirement 2013-09-29T00:36:46Z A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor. DeborahSiegele OMP:0007040 microbial_phenotype A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor. OMP:DAS decreased positive chemotaxis 2014-08-07T18:37:42Z A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control. OMP:0007041 dsiegele microbial_phenotype A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS sulfur source utilization phenotype 2013-09-29T09:39:03Z A nutrient utilization phenotype where the nutrient is used as a source of sulfur. DeborahSiegele OMP:0007042 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A nutrient utilization phenotype where the nutrient is used as a source of sulfur. OMP:DAS phosphorus source utilization phenotype 2013-09-29T09:41:48Z A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus. DeborahSiegele OMP:0007043 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus. OMP:DAS growth factor requirement phenotype 2013-10-01T15:07:53Z A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction. OMP:0007044 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction. ISBN:9780878936083 OMP:DAS inorganic phosphorus source utilization 2013-10-01T15:17:10Z A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus. OMP:0007045 microbial_phenotype siegele A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus. OMP:DAS organic phosphorus source utilization 2013-10-01T15:17:10Z A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus. OMP:0007046 microbial_phenotype siegele A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus. OMP:DAS decreased utilization of inorganic phosphorus source 2013-10-01T15:19:36Z An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control. OMP:0007047 microbial_phenotype siegele An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control. OMP:DAS increased utilization of inorganic phosphorus source 2013-10-01T15:19:36Z An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control. OMP:0007048 microbial_phenotype siegele An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control. OMP:DAS utilization of inorganic phosphorus phenotype 2013-10-01T15:19:36Z An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus. OMP:0007049 This term was made obsolete because it is redundant with OMP:0007045. microbial_phenotype siegele true An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus. OMP:DAS decreased utilization of organic phosphorus source 2013-10-01T15:20:22Z An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control. OMP:0007050 microbial_phenotype siegele An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control. OMP:DAS increased utilization of organic phosphorus source 2013-10-01T15:20:22Z An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control. OMP:0007051 microbial_phenotype siegele An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control. OMP:DAS utilization of organic phosphorus 2013-10-01T15:20:22Z An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus. OMP:0007052 This term was made obsolete because it is redunant with OMP:0007046. microbial_phenotype siegele true An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus. OMP:DAS increased positive chemotaxis 2014-08-08T18:08:51Z An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control. OMP:0007053 dsiegele microbial_phenotype An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control. OMP:DAS increased negative chemotaxis 2014-08-08T18:08:51Z An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control. OMP:0007054 dsiegele microbial_phenotype An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control. OMP:DAS decreased utilization of inorganic sulfur 2013-10-01T15:33:08Z An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. OMP:0007055 microbial_phenotype siegele An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS increased utilization of inorganic sulfur 2013-10-01T15:33:32Z An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. OMP:0007056 microbial_phenotype siegele An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS presence of inorganic sulfur utilization 2013-10-01T15:33:38Z A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur. OMP:0007057 microbial_phenotype siegele A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur. OMP:DAS decreased utilization of organic sulfur source 2013-10-01T15:34:00Z An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. OMP:0007058 microbial_phenotype siegele An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS increased utilization of organic sulfur 2013-10-01T15:34:05Z An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. OMP:0007059 microbial_phenotype siegele An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS presence of organic sulfur utilization 2013-10-01T15:34:09Z A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur. OMP:0007060 microbial_phenotype siegele A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur. OMP:DAS iron source utilization phenotype 2013-10-01T15:46:38Z A nutrient utilization phenotype where the nutrient is being used as a source of iron. OMP:0007061 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A nutrient utilization phenotype where the nutrient is being used as a source of iron. OMP:JCH increased heterocyst formation 2014-01-31T18:31:01Z A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control. DeborahSiegele OMP:0007062 microbial_phenotype A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control. OMP:DAS increased myxospore formation 2014-01-31T18:45:09Z An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control. DeborahSiegele OMP:0007063 microbial_phenotype An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control. OMP:DAS phototrophic phenotype 2014-01-31T18:49:00Z An energy metabolism phenotype where light is used as the energy source. DeborahSiegele OMP:0007064 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype phototroph An energy metabolism phenotype where light is used as the energy source. ISBN:978-0-07-340240-6 OMP:DAS pteridine resistance phenotype 2014-02-03T15:39:56Z An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound. CHEBI:26373 OMP:0007065 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. antifolate resistance methotrexate resistance phenotype microbial_phenotype pteridine sensitivity phenotype siegele CHEBI:73913 antifolate resistance An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound. CHEBI:26373 OMP:DAS CHEBI:44185 methotrexate resistance phenotype asexual reproduction phenotype 2014-02-03T15:55:25Z A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process. GO:0019954 OMP:0007066 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process. ISBN:0673521435 OMP:DAS asexual reproduction GO:0019954 binary fission phenotype 2014-02-03T15:55:54Z An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape. GO:0043093 OMP:0007067 microbial_phenotype siegele An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape. ISBN:0673521435 OMP:DAS cytokinesis by binary fission GO:0043093 multiple fission phenotype 2014-02-03T16:09:27Z An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells. OMP:0007068 baeocyte formation microbial_phenotype siegele An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells. ISBN:9781593392925 OMP:JCH requires growth factor(s) 2014-02-21T15:07:59Z A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium. OMP:0007069 auxotroph auxotrophic microbial_phenotype siegele A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium. OMP:DAS decreased organic carbon source utilization 2014-02-21T15:18:08Z An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control. OMP:0007070 microbial_phenotype siegele An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control. OMP:DAS increased organic carbon source utilization 2014-02-21T15:18:41Z An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control. OMP:0007071 microbial_phenotype siegele An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control. OMP:DAS anaerobic respiration phenotype 2014-02-21T15:28:04Z A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2). OMP:0007072 microbial_phenotype siegele A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2). ISBN:978-0-07-340240-6 OMP:DAS fermentation phenotype 2014-02-21T15:31:32Z An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain. OMP:0007073 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain. ISBN:978-0-07-340240-6 OMP:DAS increased growth factor requirement 2014-02-21T15:42:23Z A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control. OMP:0007074 microbial_phenotype siegele A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control. OMP:DAS decreased growth factor requirement 2014-02-21T15:42:44Z A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control. OMP:0007075 microbial_phenotype siegele A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control. OMP:DAS altered aerotaxis 2014-04-24T17:41:34Z An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control. OMP:0007076 microbial_phenotype siegele An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control. OMP:JCH altered chemotaxis 2014-04-24T17:43:04Z A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control. OMP:0007077 microbial_phenotype siegele A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control. OMP:JCH altered carbon source utilization 2014-04-30T15:40:12Z An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control. OMP:0007078 microbial_phenotype siegele An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control. OMP:JCH altered growth factor requirement 2014-04-30T15:52:18Z A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control. OMP:0007079 microbial_phenotype siegele A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control. OMP:JCH altered gene expression 2014-08-11T16:32:07Z A gene expression phenotype where expression of a gene or genes is altered relative to a designated control. OMP:0007080 dsiegele microbial_phenotype A gene expression phenotype where expression of a gene or genes is altered relative to a designated control. OMP:DAS altered purine requirement 2014-04-30T16:03:42Z An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control. OMP:0007081 microbial_phenotype siegele An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control. OMP:JCH altered vitamin/enzyme cofactor requirement 2014-04-30T16:07:16Z An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control. OMP:0007082 microbial_phenotype siegele An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control. OMP:JCH altered cell size 2014-07-06T14:41:49Z An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control. OMP:0007083 microbial_phenotype siegele An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control. OMP:DAS decreased cell length 2014-07-06T14:43:59Z An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control. OMP:0007084 microbial_phenotype siegele An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control. OMP:DAS altered microbial phenotype 2014-07-10T12:28:36Z A microbial phenotype that is altered in some way relative to a designated control. OMP:0007085 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype that is altered in some way relative to a designated control. OMP:DAS altered sulfur source utilization phenotype 2014-07-10T12:40:51Z A sulfur source utilization phenotype that is altered relative to a designated control. OMP:0007086 microbial_phenotype siegele A sulfur source utilization phenotype that is altered relative to a designated control. OMP:DAS altered iron source utilization 2014-07-10T12:48:21Z An iron source utilization phenotype that is altered relative to a designated control. OMP:0007087 microbial_phenotype siegele An iron source utilization phenotype that is altered relative to a designated control. OMP:DAS altered heme utilization phenotype 2014-07-10T12:49:28Z A heme utilization phenotype altered relative to a designated control. OMP:0007088 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A heme utilization phenotype altered relative to a designated control. OMP:JCH abolished heme utilization 2014-07-10T12:51:30Z A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished. OMP:0007089 microbial_phenotype siegele A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished. OMP:JCH more rod-like cell shape 2014-07-10T21:50:33Z An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control. OMP:0007090 microbial_phenotype siegele An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control. OMP:DAS decreased motility by gliding 2014-07-10T20:08:43Z A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control. OMP:0007091 microbial_phenotype siegele A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control. OMP:JCH decreased motility by swarming 2014-07-10T20:08:43Z A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control. OMP:0007092 microbial_phenotype siegele A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control. OMP:JCH decreased motility by swimming 2014-07-10T20:08:43Z A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control. OMP:0007093 microbial_phenotype siegele A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control. OMP:JCH decreased motility by twitching 2014-07-10T20:08:43Z A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control. OMP:0007094 microbial_phenotype siegele A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control. OMP:JCH increased motility by gliding 2014-07-10T20:10:11Z An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control. OMP:0007095 microbial_phenotype siegele An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control. OMP:JCH increased motility by swarming 2014-07-10T20:10:11Z An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control. OMP:0007096 microbial_phenotype siegele An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control. OMP:JCH increased motility by swimming 2014-07-10T20:10:11Z An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control. OMP:0007097 microbial_phenotype siegele An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control. OMP:JCH increased motility by twitching 2014-07-10T20:10:11Z An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control. OMP:0007098 microbial_phenotype siegele An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control. OMP:JCH cylindrical cell shape 2014-07-10T20:13:46Z A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter. OMP:0007099 PATO:0001873 microbial_phenotype siegele A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter. OMP:DAS spheroid cell shape 2014-07-10T20:13:46Z A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes. OMP:0007100 PATO:0001865 microbial_phenotype siegele A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes. OMP:DAS altered cell shape 2014-07-10T20:24:53Z A cell shape phenotype where the shape of a cell is altered relative to a designated control. APO::0000051 OMP:0007101 microbial_phenotype siegele cell shape APO::0000051 A cell shape phenotype where the shape of a cell is altered relative to a designated control. OMP:DAS more rounded cell shape 2014-07-10T21:51:13Z An altered cell shape phenotype where a cell's shape is rounder than that of a designated control. OMP:0007102 microbial_phenotype siegele An altered cell shape phenotype where a cell's shape is rounder than that of a designated control. OMP:DAS altered cell morphology 2014-07-10T22:43:40Z A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control. OMP:0007103 abnormal cell morphology microbial_phenotype siegele FYPO:0000005 abnormal cell morphology A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control. OMP:DAS altered nutrient utilization 2014-07-10T22:45:48Z A nutrient utilization phenotype that is altered relative to a designated control. OMP:0007104 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A nutrient utilization phenotype that is altered relative to a designated control. OMP:DAS altered flagellum 2014-07-10T23:00:30Z A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control. OMP:0007105 microbial_phenotype siegele A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control. OMP:DAS transcription phenotype 2014-08-11T16:37:39Z A gene expression phenotype that affects DNA-dependent transcription. GO:0006351 OMP:0007106 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A gene expression phenotype that affects DNA-dependent transcription. GO:0006351 OMP:DAS transcription, DNA-templated GO:0006351 translation phenotype 2014-08-11T16:37:39Z A gene expression phenotype that affects translation of one or more mRNAs. FYPO:0000291 GO:0006412 OMP:0007107 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype translation GO:0006412 A gene expression phenotype that affects translation of one or more mRNAs. GO:0006412 OMP:DAS translation phenotype FYPO:0000291 altered transcription 2014-08-11T16:37:59Z A transcription phenotype where transcription of a gene or genes is altered relative to a designated control. OMP:0007108 dsiegele microbial_phenotype A transcription phenotype where transcription of a gene or genes is altered relative to a designated control. OMP:DAS chemotrophic phenotype 2014-07-17T13:45:13Z An energy metabolism phenotype where energy is obtained from the oxidation of chemicals. OMP:0007109 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele An energy metabolism phenotype where energy is obtained from the oxidation of chemicals. ISBN:978-0-07-340240-6 OMP:DAS chemolithotrophic 2014-07-17T13:46:04Z A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals. OMP:0007110 microbial_phenotype siegele A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals. ISBN:978-0-07-340240-6 OMP:DAS chemoorganotrophic 2014-07-17T13:46:04Z A chemotrophic phenotype where energy is derived from the oxidation of organic molecules. OMP:0007111 microbial_phenotype organotroph siegele A chemotrophic phenotype where energy is derived from the oxidation of organic molecules. ISBN:978-0-07-340240-6 OMP:DAS respiration phenotype 2014-07-17T13:56:17Z An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor. GO:0045333 OMP:0007112 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor. ISBN:978-0-07-340240-6 OMP:DAS cellular respiration GO:0045333 ferrous iron (Fe2+) oxidation 2014-07-17T14:28:35Z A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+). OMP:0007113 microbial_phenotype siegele A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+). ISBN:978-0-07-340240-6 OMP:DAS sulfide (H2S) oxidation 2014-07-17T14:28:35Z A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S). OMP:0007114 microbial_phenotype siegele A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S). ISBN:978-0-07-340240-6 OMP:DAS altered population growth rate 2014-07-17T16:29:34Z A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control. OMP:0007115 altered doubling time altered generation time altered growth rate microbial_phenotype siegele A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control. OMP:DAS altered cell stalk 2014-07-18T13:53:13Z An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control. OMP:0007116 microbial_phenotype siegele An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control. OMP:DAS increased transcription of gene or operon 2014-08-11T16:41:06Z An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control. OMP:0007117 dsiegele microbial_phenotype An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control. OMP:DAS decreased transcription of gene or operon 2014-08-11T16:41:06Z An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control. OMP:0007118 dsiegele microbial_phenotype An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control. OMP:DAS abolished transcription of gene or operon 2014-08-11T16:42:21Z A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control. OMP:0007119 dsiegele microbial_phenotype A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control. OMP:DAS decreased transcription of sigma-factor dependent genes 2014-08-11T16:57:46Z A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control. OMP:0007120 The UniProt accession for the particular sigma factor should be entered in the extension field. dsiegele microbial_phenotype A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control. OMP:DAS increased transcription of sigma-factor dependent genes 2014-08-11T17:02:37Z An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control. OMP:0007121 The UniProt accession for the particular sigma factor should be entered in the extension field. dsiegele microbial_phenotype An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control. OMP:DAS altered translation 2014-08-11T17:07:54Z A translation phenotype where translation of one or more mRNAs is altered relative to a designated control. OMP:0007122 dsiegele microbial_phenotype A translation phenotype where translation of one or more mRNAs is altered relative to a designated control. OMP:DAS Increased translation 2014-08-11T17:10:06Z An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control. OMP:0007123 dsiegele microbial_phenotype An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control. OMP:DAS decreased translation 2014-08-11T17:10:06Z An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control. OMP:0007124 dsiegele microbial_phenotype An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control. OMP:DAS abolished translation 2014-08-11T17:10:06Z A decreased translation phenotype where translation of one or more mRNAs is abolished. OMP:0007125 dsiegele microbial_phenotype A decreased translation phenotype where translation of one or more mRNAs is abolished. OMP:DAS viscous colony consistency 2014-08-11T17:58:30Z A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency. OMP:0007126 SNOMEDCT:16601003 dsiegele microbial_phenotype Bacterial colony consistency, viscous SNOMEDCT:16601003 A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency. ISBN:1555810489 OMP:WAM altered taxis 2014-08-12T13:30:01Z A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control. OMP:0007127 dsiegele microbial_phenotype A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control. OMP:DAS altered cell arrangement 2014-08-12T13:36:13Z A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control. OMP:0007128 dsiegele microbial_phenotype A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control. OMP:DAS altered outer membrane vesicle production 2014-08-14T18:22:16Z An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control. OMP:0007129 dsiegele microbial_phenotype An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control. OMP:DAS differential test phenotype 2014-08-16T16:40:58Z A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms. OMP:0007130 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms. ISBN:9780895828309 OMP:DAS altered differential test result 2014-08-16T16:44:03Z A differential media phenotype where the results of a differential test are altered relative to a designated control. OMP:0007131 microbial_phenotype siegele A differential media phenotype where the results of a differential test are altered relative to a designated control. OMP:DAS decreased flagellum length 2014-08-17T00:46:29Z An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control. OMP:0007132 microbial_phenotype siegele An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control. OMP:DAS altered capsule phenotype 2014-08-17T12:52:35Z A capsule phenotype where the capsule layer is altered relative to a designated control. OMP:0007133 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A capsule phenotype where the capsule layer is altered relative to a designated control. OMP:DAS altered resistance to an antimicrobial agent 2014-08-17T13:12:31Z An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control. OMP:0007134 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control. OMP:DAS not resistant to alkaloid 2014-08-17T13:19:30Z An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound. OMP:0007135 microbial_phenotype siegele An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound. OMP:DAS resistant to alkaloid 2014-08-17T13:19:30Z An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds. OMP:0007136 microbial_phenotype siegele An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds. OMP:DAS altered alkaloid resistance 2014-08-17T13:19:30Z An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control. OMP:0007137 microbial_phenotype siegele An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control. OMP:DAS altered effects of pH on population growth 2014-08-17T17:35:20Z A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control. OMP:0007138 microbial_phenotype siegele A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control. OMP:DAS altered lantibiotic resistance phenotype 2014-08-17T18:03:16Z A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control. OMP:0007139 lantibiotic sensitivity phenotype microbial_phenotype siegele A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control. OMP:DAS schizogeny phenotype 2014-08-18T17:02:12Z A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell. GO:0020014 OMP:0007140 microbial_phenotype siegele A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell. ISBN:9781593392925 OMP:DAS schizogeny GO:0020014 presence of schizogeny 2014-08-18T17:12:34Z A schizogeny phenotype where an organism reproduces by the process of schizogeny. OMP:0007141 microbial_phenotype siegele A schizogeny phenotype where an organism reproduces by the process of schizogeny. OMP:DAS asexual sporulation phenotype 2014-08-18T17:15:43Z A sporulation phenotype related to the formation of spores derived from the products of mitosis. GO:0030436 OMP:0007142 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype mitotic spore formation siegele asexual sporulation GO:0030436 A sporulation phenotype related to the formation of spores derived from the products of mitosis. GO:0030436 OMP:DAS PMID:9781593392925 presence of asexual sporulation 2014-08-18T17:19:11Z An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores. OMP:0007143 microbial_phenotype siegele An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores. OMP:DAS altered asexual reproduction 2014-08-18T17:22:42Z An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control. OMP:0007144 microbial_phenotype siegele An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control. OMP:DAS altered asexual sporulation 2014-08-18T17:23:30Z An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control. OMP:0007145 microbial_phenotype siegele An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control. OMP:DAS altered schizogeny 2014-08-18T17:24:18Z A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control. OMP:0007146 microbial_phenotype siegele A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control. OMP:DAS altered DNA replication 2014-08-19T14:26:57Z A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control. OMP:0007147 microbial_phenotype siegele A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control. OMP:DAS cytokinesis phenotype 2014-08-19T14:37:21Z A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells. GO:0000910 OMP:0007148 cell division phenotype microbial_phenotype siegele A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells. OMP:DAS cytokinesis GO:0000910 septation phenotype 2014-08-19T14:52:08Z A cytokinesis phenotype related to the process of forming a septum that separates daughter cells. OMP:0007149 abnormal septation microbial_phenotype siegele FYPO:0000117 abnormal septation A cytokinesis phenotype related to the process of forming a septum that separates daughter cells. OMP:DAS abolished motility by gliding 2014-08-20T23:57:11Z A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished. OMP:0007150 microbial_phenotype siegele A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished. OMP:DAS altered colony pigmentation 2014-08-27T22:56:03Z A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control. OMP:0007151 microbial_phenotype siegele A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control. OMP:DAS persister cell phenotype 2014-08-28T11:55:19Z A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics. OMP:0007152 microbial_phenotype siegele A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics. OMP:DAS PMID:20528688 altered persister cell phenotype 2014-08-28T11:57:56Z A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control. OMP:0007153 microbial_phenotype siegele A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control. OMP:DAS increased frequency of persister cells 2014-08-28T11:59:20Z An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control. OMP:0007154 microbial_phenotype siegele An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control. OMP:DAS decreased frequency of persister cells 2014-08-28T12:00:42Z An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control. OMP:0007155 microbial_phenotype siegele An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control. OMP:DAS population growth rate phenotype 2014-08-28T12:14:20Z A population growth phenotype concerning the rate at which a microbial population multiplies over time. OMP:0007156 microbial_phenotype siegele A population growth phenotype concerning the rate at which a microbial population multiplies over time. OMP:DAS altered population growth 2014-08-28T12:15:47Z A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control. OMP:0007157 microbial_phenotype siegele A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control. OMP:DAS altered response to stress phenotype 2014-08-28T16:51:03Z A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control. OMP:0007158 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control. OMP:DAS altered response to radiation stress 2014-08-28T17:03:47Z A radiation stress phenotype that is altered relative to a designated control. OMP:0007159 microbial_phenotype siegele A radiation stress phenotype that is altered relative to a designated control. OMP:DAS altered colony morphology 2014-08-29T12:27:50Z A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control. OMP:0007160 microbial_phenotype siegele A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control. OMP:DAS regulation phenotype 2014-09-14T14:45:03Z A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality. FYPO:0000145 OMP:0007161 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele regulation phenotype FYPO:0000145 A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality. OMP:DAS gene expression regulation phenotype 2014-09-14T14:47:50Z A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover. FYPO:0000288 OMP:0007162 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover. OMP:DAS gene expression regulation phenotype FYPO:0000288 transcription regulation phenotype 2014-09-14T14:52:31Z A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription. FYPO:0000143 OMP:0007163 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele transcription regulation phenotype FYPO:0000143 A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription. OMP:DAS translation regulation phenotype 2014-09-14T14:54:10Z A gene expression regulation phenotype that affects the regulation of translation. FYPO:0000289 OMP:0007164 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype protein synthesis regulation siegele translation regulation phenotype FYPO:0000289 A gene expression regulation phenotype that affects the regulation of translation. OMP:DAS altered septation 2014-09-14T15:35:53Z A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control. OMP:0007165 microbial_phenotype siegele A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control. OMP:DAS altered cytokinesis 2014-09-14T15:36:38Z A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control. OMP:0007166 microbial_phenotype siegele A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control. OMP:DAS population growth phenotype 2014-09-25T17:14:07Z A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population. GO:0000003 OMP:0007167 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population. OMP:DAS reproduction GO:0000003 abolished septation 2014-09-25T17:18:11Z A decreased septation phenotype where formation of new cell septa is abolished. OMP:0007168 microbial_phenotype siegele A decreased septation phenotype where formation of new cell septa is abolished. OMP:DAS antimicrobial peptide resistance phenotype 2014-09-26T15:57:03Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached. **This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action. OMP:0007169 OMP:0007881 microbial_phenotype siegele true An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached. **This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action. OMP:DAS altered resistance to host defense peptides 2014-09-26T16:02:16Z An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control. OMP:0007170 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control. OMP:DAS resistant to host defense peptide 2014-09-26T16:02:16Z A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides. OMP:0007171 microbial_phenotype siegele A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides. OMP:DAS not resistant to host defense peptide 2014-09-26T16:02:16Z A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides. OMP:0007172 microbial_phenotype siegele A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides. OMP:DAS decreased resistance to host defense peptides 2014-09-26T16:02:54Z An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control. Increased sensitivity to host defense peptide OMP:0007173 microbial_phenotype siegele An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control. OMP:DAS increased resistance to host defense peptides 2014-09-26T16:02:54Z An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control. OMP:0007174 microbial_phenotype siegele An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control. OMP:DAS presence of aerobic respiration 2014-09-29T14:00:51Z An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration. OMP:0007175 microbial_phenotype siegele An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration. OMP:DAS absence of aerobic respiration 2014-09-29T14:02:56Z An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration. OMP:0007176 microbial_phenotype siegele An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration. OMP:DAS altered aerobic respiration 2014-09-29T14:04:45Z An aerobic respiration phenotype that is altered relative to a designated control. OMP:0007177 microbial_phenotype siegele An aerobic respiration phenotype that is altered relative to a designated control. OMP:DAS increased aerobic respiration 2014-09-29T14:05:44Z An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control. OMP:0007178 microbial_phenotype siegele An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control. OMP:DAS decreased aerobic respiration 2014-09-29T14:06:33Z An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control. OMP:0007179 microbial_phenotype siegele An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control. OMP:DAS abolished aerobic respiration 2014-09-29T14:07:17Z A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished. OMP:0007180 microbial_phenotype siegele A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished. OMP:DAS presence of anaerobic respiration 2014-09-29T14:08:46Z An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration. OMP:0007181 microbial_phenotype siegele An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration. OMP:DAS absence of anaerobic respiration 2014-09-29T14:08:46Z An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration. OMP:0007182 microbial_phenotype siegele An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration. OMP:DAS altered anaerobic respiration 2014-09-29T14:08:46Z An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control. OMP:0007183 microbial_phenotype siegele An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control. OMP:DAS increased anaerobic respiration 2014-09-29T14:08:46Z An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control. OMP:0007184 microbial_phenotype siegele An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control. OMP:DAS decreased anaerobic respiration 2014-09-29T14:08:46Z An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control. OMP:0007185 microbial_phenotype siegele An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control. OMP:DAS abolished anaerobic respiration 2014-09-29T14:08:46Z A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished. OMP:0007186 microbial_phenotype siegele A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished. OMP:DAS quality (Interim) 2014-10-03T17:22:57Z A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities. OMP:0007187 microbial_phenotype siegele true altered_process_quality 2014-10-03T17:27:01Z A quality which inheres in an process that is altered in same way relative to a designated control. OMP:0007188 microbial_phenotype siegele A quality which inheres in an process that is altered in same way relative to a designated control. OMP:DAS PATO:0001236 altered_relative_to 2014-10-03T17:45:57Z A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity. OMP:0007189 microbial_phenotype siegele A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity. OMP:DAS altered dinitrogen utilization 2014-10-04T01:42:58Z A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control. OMP:0007190 microbial_phenotype siegele A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control. OMP:DAS absence of dinitrogen utilization 2014-10-04T01:44:57Z A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen. OMP:0007191 microbial_phenotype siegele A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen. OMP:DAS effect of non-nutrient environmental factors on population growth phenotype 2014-10-04T18:41:07Z A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population. OMP:0007192 microbial_phenotype siegele A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population. ISBN:9780073402406 OMP:DAS altered_physical_object_quality 2014-10-04T19:34:54Z A physical object quality that is altered relative to a designated control. OMP:0007193 microbial_phenotype siegele A physical object quality that is altered relative to a designated control. OMP:DAS biological process phenotype 2014-10-18T21:38:46Z A microbial phenotype that affects a biological process. FYPO:0000300 GO:0008150 OMP:0007194 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype that affects a biological process. FYPO:0000300 OMP:DAS biological process phenotype FYPO:0000300 biological_process GO:0008150 chemical resistance phenotype 2014-10-18T21:39:28Z A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity. APO:0000087 OMP:0007195 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chemical sensitivity phenotype microbial_phenotype siegele resistance to chemicals APO:0000087 A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity. OMP:DAS altered akinete formation 2014-10-20T15:08:04Z An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control. OMP:0007196 microbial_phenotype siegele An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control. OMP:DAS cellular component phenotype 2014-10-21T23:28:25Z A microbial phenotype that affects a quality of a cellular component. CMPO:0000259 GO:0005575 OMP:0007197 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele cellular_component GO:0005575 cellular component phenotype CMPO:0000259 A microbial phenotype that affects a quality of a cellular component. OMP:DAS presence of resistance to UV-A radiation 2015-02-04T21:53:26Z A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm). OMP:0007198 microbial_phenotype siegele A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm). ISO:21348 OMP:DAS presence of resistance to UV-B radiation 2015-02-04T22:00:52Z A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm). OMP:0007199 microbial_phenotype siegele A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm). ISO:21348 OMP:DAS presence of resistance to UV-C radiation 2015-02-04T22:02:13Z A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm). OMP:0007200 microbial_phenotype siegele A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm). ISO:21348 OMP:DAS decreased resistance to UV-C radiation 2015-02-04T22:03:32Z A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control. OMP:0007201 microbial_phenotype siegele A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control. OMP:DAS abolished resistance to UV-C radiation 2015-02-04T22:05:25Z A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished. OMP:0007202 microbial_phenotype siegele A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished. OMP:DAS altered gene expression regulation 2015-02-05T11:12:46Z A gene expression regulation phenotype that is altered relative to a designated control. OMP:0007203 microbial_phenotype siegele A gene expression regulation phenotype that is altered relative to a designated control. OMP:DAS decreased resistance to UV-A radiation 2015-02-05T11:30:34Z A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control. OMP:0007204 microbial_phenotype siegele A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control. OMP:DAS decreased resistance to UV-B radiation 2015-02-05T11:31:00Z A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control. OMP:0007205 microbial_phenotype siegele A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control. OMP:DAS increased resistance to UV-A 2015-02-05T11:35:37Z An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control. OMP:0007206 microbial_phenotype siegele An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control. OMP:DAS increased resistance to UV-B 2015-02-05T11:35:59Z An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control. OMP:0007207 microbial_phenotype siegele An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control. OMP:DAS increased resistance to UV-C 2015-02-05T11:36:16Z An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control. OMP:0007208 microbial_phenotype siegele An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control. OMP:DAS presence of RecA-mediated homologous recombination 2015-02-17T12:08:11Z A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein. OMP:0007209 dsiegele microbial_phenotype A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein. OMP:DAS presence of lambda Red-mediated recombination 2015-02-17T12:13:27Z A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo). OMP:0007210 dsiegele microbial_phenotype A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo). OMP:DAS altered trace element utilization 2015-03-13T15:13:30Z A trace element utilization phenotype that is altered relative to a designated control. OMP:0007211 altered micronutrient utilization microbial_phenotype siegele A trace element utilization phenotype that is altered relative to a designated control. OMP:DAS altered phosphorus source utilization 2015-03-13T15:23:04Z A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control. OMP:0007212 microbial_phenotype siegele A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control. OMP:DAS altered inorganic phosphorus source utilization 2015-03-13T15:25:43Z An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control. OMP:0007213 microbial_phenotype siegele An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control. OMP:DAS altered organic phosphorus source utilization 2015-03-13T15:29:56Z An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control. OMP:0007214 microbial_phenotype siegele An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control. OMP:DAS rifamycin resistance phenotype 2015-03-15T22:30:48Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds. CHEBI:26580 OMP:0007215 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype rifabutin resistance phenotype rifampicin resistance phenotype rifapentine resistance phenotype siegele CHEBI:28077 rifampicin resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds. CHEBI:26580 OMP:DAS rifamycin CHEBI:26580 CHEBI:45304 rifapentine resistance phenotype CHEBI:45367 rifabutin resistance phenotype altered rifamycin resistance 2015-03-15T22:32:58Z A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control. OMP:0007216 microbial_phenotype siegele A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control. OMP:DAS not resistant to rifamycin 2015-03-15T22:32:58Z A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins. OMP:0007217 microbial_phenotype siegele A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins. OMP:DAS resistant to rifamycin 2015-03-15T22:32:58Z A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins. OMP:0007218 microbial_phenotype siegele A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins. OMP:DAS decreased resistance to rifamycin 2015-03-15T22:37:30Z An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control. OMP:0007219 microbial_phenotype siegele An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control. OMP:DAS increased resistance to rifamycin 2015-03-15T22:39:31Z An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control. OMP:0007220 microbial_phenotype siegele An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control. OMP:DAS abolished resistance to rifamycin 2015-03-15T22:40:32Z A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished. OMP:0007221 microbial_phenotype siegele A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished. OMP:DAS growth rate control of transcription 2015-05-20T16:23:34Z A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases. OMP:0007222 microbial_phenotype siegele A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases. OMP:DAS PMID:11844765 decreased spore germination efficiency 2015-06-01T16:03:03Z A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control. OMP:0007223 dsiegele microbial_phenotype A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control. OMP:DAS endospore location phenotype 2015-06-03T16:03:42Z An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium). OMP:0007224 dsiegele microbial_phenotype An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium). OMP:KDA central location of endospore 2015-06-03T16:06:06Z An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium). OMP:0007225 dsiegele microbial_phenotype An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium). ISBN:9780073402406 OMP:DAS terminal location of endospore 2015-06-04T15:40:39Z An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium). OMP:0007226 dsiegele microbial_phenotype An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium). OMP:DAS swollen sporangium 2015-06-04T15:42:45Z A xx. OMP:0007227 dsiegele microbial_phenotype A xx. ISBN:9780073402406 OMP:DAS endospore morphology phenotype 2015-06-04T16:05:37Z A spore morphology phenotype that is related to the form and structure of an endospore. OMP:0007228 dsiegele microbial_phenotype A spore morphology phenotype that is related to the form and structure of an endospore. CL:0000563 GO:0034301 OMP:DAS endospore external encapsulating structure phenotype 2015-06-04T16:17:34Z An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore. GO:0043591 OMP:0007229 dsiegele microbial_phenotype endospore external encapsulating structure GO:0043591 An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore. GO:0043591 OMP:DAS endospore exosporium phenotype 2015-06-04T16:22:54Z An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid. GO:0043592 OMP:0007230 dsiegele microbial_phenotype exosporium GO:0043592 An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid. GO:0043592 OMP:DAS presence of an exosporium 2015-06-04T16:29:52Z An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore. OMP:0007231 dsiegele microbial_phenotype An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore. OMP:DAS absence of an exosporium 2015-06-04T16:29:52Z An exosporium phenotype where the mature endospore lacks an exosporium. OMP:0007232 dsiegele microbial_phenotype An exosporium phenotype where the mature endospore lacks an exosporium. OMP:DAS absence of binary fission 2015-06-20T18:21:53Z A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission. OMP:0007233 microbial_phenotype siegele A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission. OMP:JCH absence of budding 2015-06-20T18:24:03Z A budding phenotype where an organism lacks to the ability to multiply by the process of budding. OMP:0007234 microbial_phenotype siegele A budding phenotype where an organism lacks to the ability to multiply by the process of budding. OMP:JCH absence of multiple fission 2015-06-20T18:25:24Z A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission. OMP:0007235 microbial_phenotype siegele A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission. OMP:JCH absence of asexual sporulation 2015-06-20T18:26:28Z An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores. OMP:0007236 microbial_phenotype siegele An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores. OMP:JCH bacteriophage sensitivity phenotype 2015-06-29T17:35:29Z A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage. OMP:0007237 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage. OMP:DAS sensitive to bacteriophage 2015-06-29T17:56:42Z A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage. OMP:0007238 microbial_phenotype siegele A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage. OMP:DAS not sensitive to bacteriophage 2015-06-29T18:02:50Z A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage. OMP:0007239 bacteriophage resistance microbial_phenotype siegele A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage. OMP:DAS decreased bacteriophage absorption 2015-06-29T18:05:20Z An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage. OMP:0007240 microbial_phenotype siegele An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage. OMP:DAS post-injection defect 2015-06-29T18:09:11Z An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection. OMP:0007241 microbial_phenotype siegele An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection. OMP:DAS altered host-virus interaction 2015-07-04T00:13:56Z A host-virus interaction phenotype that is altered relative to a designated control. OMP:0007242 microbial_phenotype siegele A host-virus interaction phenotype that is altered relative to a designated control. OMP:DAS altered bacteriophage sensitivity 2015-07-04T00:16:40Z A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control. OMP:0007243 microbial_phenotype siegele A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control. OMP:DAS decreased sensitivity to bacteriophage 2015-07-04T00:18:12Z An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control. OMP:0007244 microbial_phenotype siegele An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control. OMP:DAS abolished sensitivity to bacteriophage 2015-07-04T00:20:54Z A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished. OMP:0007245 microbial_phenotype siegele A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished. OMP:DAS not resistant to a chemical 2015-07-16T00:36:34Z A chemical resistance phenotype where a microbe is not resistant to a chemical. OMP:0007246 microbial_phenotype siegele A chemical resistance phenotype where a microbe is not resistant to a chemical. OMP:DAS resistant to a chemical 2015-07-16T00:36:34Z A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical. OMP:0007247 microbial_phenotype siegele A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical. OMP:DAS altered resistance to chemical 2015-07-16T00:36:34Z A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control. OMP:0007248 altered chemical sensitivity microbial_phenotype siegele A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control. OMP:DAS decreased resistance to a chemical increased sensitivity to a chemical 2015-07-16T00:42:17Z An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control. OMP:0007249 microbial_phenotype siegele An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control. OMP:DAS increased resistance to a chemical 2015-07-16T00:42:17Z An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control. OMP:0007250 decreased sensitivity to a chemical microbial_phenotype siegele An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control. OMP:DAS abolished chemical sensitivity 2015-07-16T00:42:17Z An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished. Chemical sensitivity phenotype and its child terms were renamed as chemical resistance phenotypes to be consistent with other branches of OMP. Other terms in this branch were redefined, but this term was made obsolete and replaced by OMP:0007250 ! increased resistance to a chemical. When using OMP:0007250 for annotations enter the database identifier for the specific chemical in the Annotation Extension field. OMP:0007250 OMP:0007251 microbial_phenotype siegele true An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished. OMP:DAS colonization of a host phenotype 2015-07-31T13:22:28Z A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism. OMP:0007252 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism. OMP:DAS presence of colonization of a host 2015-07-31T13:25:08Z A colonization of a host phenotype where a microbe is able to colonize a host organism. OMP:0007253 microbial_phenotype siegele A colonization of a host phenotype where a microbe is able to colonize a host organism. OMP:JG absence of colonization of a host 2015-07-31T13:25:08Z A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism. OMP:0007254 microbial_phenotype siegele A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism. OMP:JG altered colonization of a host 2015-07-31T13:25:08Z A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:0007255 microbial_phenotype siegele A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:DAS increased colonization of a host 2015-07-31T13:26:07Z An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. OMP:0007256 microbial_phenotype siegele An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. OMP:DAS decreased colonization of a host 2015-07-31T13:26:07Z An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:0007257 microbial_phenotype siegele An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:DAS abolished colonization of a host 2015-07-31T13:26:07Z A decreased colonization of a host phenotype where colonization of a host organism is abolished. OMP:0007258 microbial_phenotype siegele A decreased colonization of a host phenotype where colonization of a host organism is abolished. OMP:DAS microbial cell viability phenotype 2015-07-31T13:47:33Z A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions. OMP:0007259 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell viability microbial_phenotype siegele FYPO:0000004 cell viability A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions. FYPO:0000004 OMP:DAS altered microbial cell viability 2015-07-31T14:00:54Z A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control. OMP:0007260 microbial_phenotype siegele A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control. OMP:DAS decreased cell viability 2015-07-31T14:00:54Z An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control. OMP:0007261 microbial_phenotype siegele An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control. OMP:DAS increased cell viability 2015-07-31T14:00:54Z An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control. OMP:0007262 microbial_phenotype siegele An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control. OMP:DAS viable but nonculturable cell 2015-07-31T14:00:54Z OMP:0007263 microbial_phenotype siegele drug-dependent population growth phenotype 2015-08-03T14:04:45Z A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium. OMP:0007264 microbial_phenotype siegele A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium. OMP:DAS presence of drug-dependent population growth 2015-08-03T14:07:51Z A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium. OMP:0007265 microbial_phenotype siegele A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium. OMP:DAS absence of drug-dependent population growth 2015-08-03T14:07:51Z A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium. OMP:0007266 microbial_phenotype siegele A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium. OMP:DAS altered drug-dependence of population growth 2015-08-03T14:07:51Z A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control. OMP:0007267 microbial_phenotype siegele A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control. OMP:REF increased drug-dependence of population growth 2015-08-03T14:07:51Z An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control. OMP:0007268 microbial_phenotype siegele An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control. OMP:DAS decreased drug-dependence of population growth 2015-08-03T14:07:51Z An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control. OMP:0007269 microbial_phenotype siegele An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control. OMP:DAS abolished drug-dependence of population growth 2015-08-03T14:07:51Z A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished. OMP:0007270 microbial_phenotype siegele A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished. OMP:DAS increased sensitivity to bacteriophage 2015-08-11T16:54:13Z An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control. OMP:0007271 microbial_phenotype siegele An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control. OMP:DAS decreased absorption of bacteriocin 2015-09-24T20:41:51Z An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells. OMP:0007272 microbial_phenotype siegele An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells. OMP:DAS bacteriocin tolerant 2015-09-24T20:45:00Z An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects. OMP:0007273 colicin tolerant microbial_phenotype siegele An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects. OMP:DAS PMID:4860908 mixotrophic carbon source utilization 2015-09-28T15:12:37Z A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode. OMP:0007274 microbial_phenotype mixotrophy siegele A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode. OMP:DAS altered frequency of reversing direction of flagellar rotation 2015-10-17T19:56:02Z An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control. OMP:0007275 microbial_phenotype siegele An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control. OMP:DAS increased threshold for positive chemotaxis 2015-11-07T13:32:21Z A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control. OMP:0007276 microbial_phenotype siegele A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control. OMP:DAS cell wall morphology phenotype 2015-11-11T15:41:37Z OMP:0005233 OMP:0007277 This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. microbial_phenotype siegele true GO:0005618 OMP:DAS This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. disproportionation of thiosulfate 2015-11-12T00:46:14Z A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide. Disproportionation of thiosulfate is the reaction: thiosulfate + H2O --> SO42- + HS- + H+. OMP:0007278 microbial_phenotype siegele A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide. OMP:DAS PMID:10919837 altered protein activity phenotype 2016-01-07T22:48:43Z A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control. OMP:0007279 microbial_phenotype siegele A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control. OMP:DAS presence of enzymatic activity 2016-01-09T18:04:12Z An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism. OMP:0007280 microbial_phenotype siegele An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism. OMP:DAS absence of enzymatic activity 2016-01-09T18:05:38Z An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism. OMP:0007281 microbial_phenotype siegele An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism. OMP:DAS presence of UV-radiation resistance 2016-01-09T18:37:25Z A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation. OMP:0007282 microbial_phenotype siegele A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation. OMP:DAS absence of UV radiation resistance 2016-01-09T18:39:51Z A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation. OMP:0007283 microbial_phenotype siegele A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation. OMP:DAS presence of virulence 2016-01-09T18:47:01Z A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host). OMP:0007284 microbial_phenotype siegele A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host). OMP:DAS laccase activity phenotype 2016-01-10T00:30:53Z A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor. OMP:0007285 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Laccase is involved in the synthesis of fungal melanin. benzenediol:oxygen oxidoreductase activity microbial_phenotype siegele A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor. OMP:DAS EC:1.10.3.2 benzenediol:oxygen oxidoreductase activity presence of laccase activity 2016-01-10T00:36:59Z A laccase phenotype where an organism exhibits laccase activity. OMP:0007286 microbial_phenotype siegele A laccase phenotype where an organism exhibits laccase activity. OMP:DAS absence of laccase activity 2016-01-10T00:37:17Z A laccase phenotype where an organism doesn't exhibit laccase activity. OMP:0007287 microbial_phenotype siegele A laccase phenotype where an organism doesn't exhibit laccase activity. OMP:DAS altered laccase activity 2016-01-10T00:37:57Z A laccase activity phenotype where laccase activity is altered relative to a designated control. OMP:0007288 microbial_phenotype siegele A laccase activity phenotype where laccase activity is altered relative to a designated control. OMP:DAS increased laccase activity 2016-01-10T00:45:01Z An altered laccase activity phenotype where laccase activity is increased relative to a designated control. OMP:0007289 microbial_phenotype siegele An altered laccase activity phenotype where laccase activity is increased relative to a designated control. OMP:DAS decreased laccase activity 2016-01-10T00:45:01Z An altered laccase activity phenotype where laccase activity is decreased relative to a designated control. OMP:0007290 microbial_phenotype siegele An altered laccase activity phenotype where laccase activity is decreased relative to a designated control. OMP:DAS abolished laccase activity 2016-01-10T00:45:01Z A decreased laccase activity phenotype where laccase activity is abolished. OMP:0007291 microbial_phenotype siegele A decreased laccase activity phenotype where laccase activity is abolished. OMP:DAS altered spore germination efficiency 2016-01-10T00:55:26Z A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control. OMP:0007292 microbial_phenotype siegele A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control. OMP:DAS increased spore germination efficiency 2016-01-10T00:57:49Z A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control. OMP:0007293 microbial_phenotype siegele A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control. OMP:DAS diazonium blue B staining phenotype 2016-01-29T22:48:37Z A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts. APO:0000061 OMP:0007294 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. fast blue B staining phenotype microbial_phenotype siegele CHEBI:87629 fast blue B staining phenotype A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts. OMP:DAS PMID:60081 doi:10.1099/00207713-31-2-204 colony color APO:0000061 presence of diazonium blue B staining 2016-01-29T23:13:37Z A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B. OMP:0007295 microbial_phenotype siegele A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B. OMP:DAS absence of diazonium blue B staining 2016-01-29T23:13:37Z A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B. OMP:0007296 microbial_phenotype siegele A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B. OMP:DAS altered diazonium blue B staining 2016-01-29T23:13:37Z A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control. OMP:0007297 microbial_phenotype siegele A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control. OMP:DAS presence of acid-fast stain 2016-01-29T23:18:08Z An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. OMP:0007298 microbial_phenotype siegele An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. OMP:DAS absence of acid-fast stain 2016-01-29T23:19:38Z An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. OMP:0007299 microbial_phenotype non-acid-fast staining siegele An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. OMP:DAS altered acid-fast stain 2016-01-29T23:29:27Z An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control. OMP:0007300 microbial_phenotype siegele An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control. OMP:DAS decreased diazonium blue B staining 2016-01-30T00:33:19Z An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control. OMP:0007301 microbial_phenotype siegele An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control. OMP:DAS increased diazonium blue B staining 2016-01-30T00:33:19Z An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control. OMP:0007302 microbial_phenotype siegele An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control. OMP:DAS abolished diazonium blue B staining 2016-01-30T13:32:56Z A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished. OMP:0007303 microbial_phenotype siegele A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished. OMP:DAS altered cell staining phenotype 2016-01-31T00:30:08Z A cell staining phenotype that is altered relative to a designated control. OMP:0007304 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cell staining phenotype that is altered relative to a designated control. OMP:DAS altered utilization of inorganic nitrogen source 2016-01-31T00:41:26Z An inorganic nitrogen source utilization phenotype that is altered relative to a designated control. OMP:0007305 microbial_phenotype siegele An inorganic nitrogen source utilization phenotype that is altered relative to a designated control. OMP:DAS presence of inorganic nitrogen source utilization 2016-01-31T00:43:21Z An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen. OMP:0007306 microbial_phenotype siegele An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen. OMP:DAS absence of inorganic nitrogen utilization 2016-01-31T00:44:37Z An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen. OMP:0007307 microbial_phenotype siegele An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen. OMP:DAS cell death phenotype 2016-02-02T14:15:49Z A biological process phenotype that relates to the cessation of life of an individual cell. APO:0000312 OMP:0007308 dsiegele microbial_phenotype cell death APO:0000312 A biological process phenotype that relates to the cessation of life of an individual cell. APO:0000312 OMP:DAS apoptosis phenotype 2016-02-02T14:27:37Z An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process. GO:0006915 OMP:0007309 dsiegele microbial_phenotype APO:0000155 An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process. OMP:DAS apoptotic process GO:0006915 absence of apoptosis 2016-02-02T14:31:24Z An apoptosis phenotype where a cell or cells cannot undergo apoptosis. OMP:0007310 dsiegele microbial_phenotype An apoptosis phenotype where a cell or cells cannot undergo apoptosis. OMP:DAS presence of apoptosis 2016-02-02T14:31:24Z An apoptosis phenotype where a cell or cells can undergo apoptosis. OMP:0007311 dsiegele microbial_phenotype An apoptosis phenotype where a cell or cells can undergo apoptosis. OMP:DAS altered apoptosis 2016-02-02T14:31:24Z An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control. OMP:0007312 dsiegele microbial_phenotype An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control. OMP:DAS decreased apoptosis 2016-02-02T14:58:50Z An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control. OMP:0007313 dsiegele microbial_phenotype An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control. OMP:DAS increased apoptosis 2016-02-02T14:58:50Z An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control. OMP:0007314 dsiegele microbial_phenotype An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control. OMP:DAS population morphology phenotype 2016-02-05T20:20:28Z A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm. OMP:0007315 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm. OMP:DAS abolished superoxide dismutase activity 2016-02-23T02:09:35Z A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished. OMP:0007316 microbial_phenotype siegele A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished. OMP:DAS abolished protein kinase A activity 2016-02-23T02:13:30Z A decreased protein kinase A activity phenotype where the activity is abolished. OMP:0007317 microbial_phenotype siegele A decreased protein kinase A activity phenotype where the activity is abolished. OMP:DAS abolished ferric reductase activity 2016-02-23T02:16:03Z A decreased ferric reductase activity phenotype where ferric reductase activity is abolished. OMP:0007318 microbial_phenotype siegele A decreased ferric reductase activity phenotype where ferric reductase activity is abolished. OMP:DAS mucoid colony surface phenotype 2016-02-25T18:35:28Z A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony. OMP:0007319 microbial_phenotype siegele A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony. OMP:DAS absence of mucoid colonies 2016-02-25T18:43:57Z A mucoid colony phenotype where the organism forms nonmucoid colonies. OMP:0007320 microbial_phenotype siegele A mucoid colony phenotype where the organism forms nonmucoid colonies. OMP:DAS altered mucoid colony phenotype 2016-02-25T18:44:52Z A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control. OMP:0007321 microbial_phenotype siegele A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control. OMP:DAS increased mucoidy 2016-02-25T18:46:37Z OMP:0007322 microbial_phenotype siegele decreased mucoidy 2016-02-25T18:46:37Z An altered mucoid colony pheotype where colonies are less mucoid than a designated control. OMP:0007323 microbial_phenotype siegele An altered mucoid colony pheotype where colonies are less mucoid than a designated control. OMP:DAS abolished mucoidy 2016-02-25T18:46:37Z A decreased mucoidy phenotype where mucoid colonies are abolished. OMP:0007324 microbial_phenotype siegele A decreased mucoidy phenotype where mucoid colonies are abolished. OMP:DAS absence of inorganic sulfur utilization 2016-02-25T22:42:30Z A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur. OMP:0007325 microbial_phenotype siegele A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur. OMP:DAS absence of organic sulfur utilization 2016-02-25T22:42:30Z A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur. OMP:0007326 microbial_phenotype siegele A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur. OMP:DAS bud morphology phenotype 2016-05-21T22:43:21Z A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding. APO:0000212 GO:0005933 OMP:0007327 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele cellular bud GO:0005933 A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding. GO:0005933 OMP:DAS bud morphology APO:0000212 altered bud morphology 2016-05-21T22:52:05Z A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control. OMP:0007328 microbial_phenotype siegele A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control. OMP:DAS bud neck morphology 2016-05-21T22:59:29Z A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell. APO:0000056 OMP:0007329 microbial_phenotype siegele A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell. GO:0005935 OMP:DAS bud neck morphology APO:0000056 altered bud neck morphology 2016-05-21T23:02:47Z A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control. OMP:0007330 microbial_phenotype siegele A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control. OMP:DAS abolished apoptosis 2016-05-26T23:29:02Z A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished. OMP:0007331 microbial_phenotype siegele A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished. OMP:DAS cellular process phenotype 2016-05-27T23:03:44Z A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell. FYPO:0000114 OMP:0007332 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell. GO:0009987 OMP:DAS cellular process phenotype FYPO:0000114 autophagy phenotype 2016-05-27T23:08:08Z A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm. OMP:0007333 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. autolysosome formation autophagosome formation microbial_phenotype siegele A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm. GO:0006914 OMP:DAS autophagic vesicle formation phenotype 2016-05-27T23:09:01Z An autophagy phenotype related to the formation of autophagic vesicles. OMP:0007334 microbial_phenotype siegele An autophagy phenotype related to the formation of autophagic vesicles. OMP:DAS altered autophagic vesicle formation 2016-05-27T23:09:26Z An autophagic vesicle formation phenotype that is altered relative to a designated control. OMP:0007335 microbial_phenotype siegele An autophagic vesicle formation phenotype that is altered relative to a designated control. OMP:DAS increased autophagic vesicle formation 2016-05-27T23:10:53Z An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control. OMP:0007336 microbial_phenotype siegele An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control. OMP:DAS decreased autophagic vesicle formation 2016-05-27T23:10:53Z An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control. OMP:0007337 microbial_phenotype siegele An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control. OMP:DAS abolished autophagic vesicle formation 2016-05-27T23:10:53Z A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished. OMP:0007338 microbial_phenotype siegele A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished. OMP:DAS nuclear morphology phenotype 2016-05-28T02:18:45Z A cell morphology phenotype related to the size, shape, or appearance of the nucleus. APO:0000057 OMP:0007339 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele nuclear morphology APO:0000057 A cell morphology phenotype related to the size, shape, or appearance of the nucleus. OMP:DAS altered nuclear morphology 2016-05-28T02:21:05Z A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control. OMP:0007340 microbial_phenotype siegele A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control. OMP:DAS altered cell death 2016-05-28T02:24:07Z A cell death phenotype where death of a cell or cells is altered relative to a designated control. OMP:0007341 microbial_phenotype siegele A cell death phenotype where death of a cell or cells is altered relative to a designated control. OMP:DAS altered cellular process 2016-05-28T02:25:03Z A cellular process phenotype where a cellular process is altered relative to a designated control. OMP:0007342 microbial_phenotype siegele A cellular process phenotype where a cellular process is altered relative to a designated control. OMP:DAS altered autophagy 2016-05-28T02:28:04Z An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control. OMP:0007343 microbial_phenotype siegele An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control. OMP:DAS nuclear position phenotype 2016-05-28T02:34:23Z A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells. OMP:0007344 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells. APO:0000118 OMP:DAS altered nuclear position 2016-05-28T02:36:59Z A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control. OMP:0007345 microbial_phenotype siegele A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control. OMP:DAS protein secretion phenotype 2016-06-08T17:02:00Z A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell. OMP:0007346 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. exocytosis microbial_phenotype protein secretion siegele A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell. GO:0009306 OMP:DAS APO:0000078 protein secretion altered protein secretion 2016-06-09T22:42:13Z A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control. OMP:0007347 microbial_phenotype siegele A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control. OMP:DAS increased protein secretion 2016-06-09T22:43:50Z An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control. FYPO:0000539 OMP:0007348 microbial_phenotype siegele An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control. OMP:DAS increased protein secretion FYPO:0000539 decreased protein secretion 2016-06-09T22:47:42Z An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control. FYPO:0000538 OMP:0007349 microbial_phenotype siegele decreased protein secretion FYPO:0000538 An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control. OMP:DAS abolished protein secretion 2016-06-09T22:48:16Z A decreased protein secretion phenotype where the process of protein secretion is abolished. FYPO:0000537 OMP:0007350 microbial_phenotype siegele abolished protein secretion FYPO:0000537 A decreased protein secretion phenotype where the process of protein secretion is abolished. OMP:DAS altered biological process 2016-06-09T22:50:27Z A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control. OMP:0007351 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control. OMP:DAS altered cell development 2016-06-09T22:58:20Z A cell development phenotype where development of a cell or cells is altered relative to a designated control. OMP:0007352 microbial_phenotype siegele A cell development phenotype where development of a cell or cells is altered relative to a designated control. OMP:DAS altered spore germination 2016-06-09T23:07:17Z A spore germination phenotype where germination of a spore or spores is altered relative to a designated control. OMP:0007353 microbial_phenotype siegele A spore germination phenotype where germination of a spore or spores is altered relative to a designated control. OMP:DAS altered amino acid requirement 2016-06-16T15:56:40Z An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control. OMP:0007354 dsiegele microbial_phenotype An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control. OMP:DAS abolished amino acid requirement 2016-06-16T16:20:47Z A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished. OMP:0007355 dsiegele microbial_phenotype A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished. OMP:DAS quinone resistance phenotype 2016-06-17T01:16:57Z An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds. CHEBI:36141 OMP:0007356 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype mitomycin resistance phenotype siegele CHEBI:25357 mitomycin resistance phenotype quinone CHEBI:36141 An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds. CHEBI:36141 OMP:DAS altered cellular component phenotype 2016-06-20T16:01:53Z A cellular component phenotype where a quality of a cellular component is altered relative to a designated control. OMP:0007357 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A cellular component phenotype where a quality of a cellular component is altered relative to a designated control. OMP:DAS nucleoside resistance phenotype 2016-06-20T16:23:54Z An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents. OMP:0007358 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. azidothymidine resistance phenotype dsiegele microbial_phenotype puromycin resistance phenotype tunicamycin resistance phenotype zidovudine resistance phenotype An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents. CHEBI:33838 OMP:DAS CHEBI:29699 tunicamycin resistance phenotype CHEBI:10110 azidothymidine resistance phenotype CHEBI:17939 puromycin resistance phenotype CHEBI:10110 zidovudine resistance phenotype resistant to a nucleoside 2016-06-20T16:27:19Z A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside. OMP:0007359 dsiegele microbial_phenotype A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside. OMP:DAS not resistant to a nucleoside 2016-06-20T16:27:19Z A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside. OMP:0007360 dsiegele microbial_phenotype A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside. OMP:DAS altered resistance to a nucleoside 2016-06-20T16:27:19Z A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control. OMP:0007361 dsiegele microbial_phenotype A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control. OMP:DAS Increased resistance to a nucleoside 2016-06-20T16:40:21Z An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control. OMP:0007362 dsiegele microbial_phenotype An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control. OMP:DAS decreased resistance to a nucleoside 2016-06-20T16:40:21Z An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control. OMP:0007363 dsiegele microbial_phenotype An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control. OMP:DAS abolished resistance to a nucleoside 2016-06-20T16:40:21Z An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished. OMP:0007364 dsiegele microbial_phenotype An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished. OMP:DAS acridine antimicrobial agent resistance phenotype 2016-06-21T01:11:35Z An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom. OMP:0007365 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. acridine orange acriflavine resistance phenotype acriflavinium chloride microbial_phenotype siegele An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom. CHEBI:36420 OMP:DAS CHEBI:74728 acriflavinium chloride CHEBI:51739 acridine orange resistant to an acridine 2016-06-21T01:17:16Z An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine. OMP:0007366 microbial_phenotype siegele An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine. OMP:DAS not resistant to an acridine 2016-06-21T01:17:16Z An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine. OMP:0007367 microbial_phenotype siegele An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine. OMP:DAS altered resistance to an acridine 2016-06-21T01:17:16Z An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control. OMP:0007368 microbial_phenotype siegele An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control. OMP:DAS increased resistance to an acridine 2016-06-21T01:17:16Z An altered resistance to an acridine phenotype where resistance is increased relative to a designated control. OMP:0007369 microbial_phenotype siegele An altered resistance to an acridine phenotype where resistance is increased relative to a designated control. OMP:DAS decreased resistance to an acridine 2016-06-21T01:17:16Z An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control. OMP:0007370 microbial_phenotype siegele An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control. OMP:DAS abolished resistance to an acridine 2016-06-21T01:17:16Z A decreased resistance to an acridine phenotype where resistance abolished. OMP:0007371 microbial_phenotype siegele A decreased resistance to an acridine phenotype where resistance abolished. OMP:DAS alkylating agent resistance phenotype 2016-06-22T16:41:33Z A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. Hydroxyurea MMS OMP:0007372 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. alkylating agent sensitivity phenotype dsiegele methyl methanesulfonate microbial_phenotype CHEBI:25255 MMS A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. CHEBI:22333 OMP:DAS CHEBI:44423 Hydroxyurea CHEBI:25255 methyl methanesulfonate resistant to alkylating agent 2016-06-23T15:27:23Z An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent. OMP:0007373 dsiegele microbial_phenotype An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent. OMP:das not resistant to alkylating agent 2016-06-23T15:27:23Z An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent. OMP:0007374 dsiegele microbial_phenotype An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent. OMP:DAS altered resistance to an alkylating agent 2016-06-23T15:27:23Z An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control. OMP:0007375 dsiegele microbial_phenotype An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control. OMP:DAS increased resistance to alkylating agent 2016-06-23T15:27:23Z An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control. OMP:0007376 decreased sensitivity to an alkylating agent dsiegele microbial_phenotype An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control. OMP:DAS decreased resistance to alkylating agent 2016-06-23T15:27:23Z An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control. OMP:0007377 dsiegele increased sensitivity to an alkylating agent microbial_phenotype An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control. OMP:DAS abolished resistance to alkylating agent 2016-06-23T15:27:23Z An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished. OMP:0007378 dsiegele microbial_phenotype An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished. OMP:DAS pyrimidine requirement 2016-06-23T15:57:42Z A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base. OMP:0007379 dsiegele microbial_phenotype uracil requirement CHEBI:17568 uracil requirement A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base. OMP:DAS benzamides resistance phenotype 2016-06-26T14:45:16Z An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent. OMP:0007380 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. benzamide resistance phenotype benzamides sensitivity phenotype microbial_phenotype siegele CHEBI:28179 benzamide resistance phenotype An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent. CHEBI:22702 OMP:DAS CHEBI:22702 benzamides sensitivity phenotype resistant to benzamides 2016-06-26T14:45:16Z A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide. OMP:0007381 microbial_phenotype siegele A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide. OMP:DAS not resistant to benzamides 2016-06-26T14:45:16Z A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide. OMP:0007382 microbial_phenotype siegele A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide. OMP:DAS altered resistance to benzamides 2016-06-26T14:45:16Z A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control. OMP:0007383 microbial_phenotype siegele A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control. OMP:DAS increased resistance to a benzamide 2016-06-26T14:45:16Z An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control. OMP:0007384 microbial_phenotype siegele An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control. OMP:DAS decreased resistance benzamides 2016-06-26T14:45:16Z An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control. OMP:0007385 microbial_phenotype siegele An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control. OMP:DAS abolished resistance to benzamides 2016-06-26T14:45:16Z A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished. OMP:0007386 microbial_phenotype siegele A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished. OMP:DAS altered pyrimidine requirement 2016-06-29T15:45:39Z An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control. OMP:0007387 dsiegele microbial_phenotype An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control. OMP:DAS increased pyrimidine requirement 2016-06-29T15:47:23Z An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. OMP:0007388 dsiegele microbial_phenotype An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. OMP:DAS decreased pyrimidine requirement 2016-06-29T15:47:23Z An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. OMP:0007389 dsiegele microbial_phenotype An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. OMP:DAS abolished pyrimidine requirement 2016-06-29T15:47:23Z A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished. OMP:0007390 dsiegele microbial_phenotype A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished. OMP:DAS abolished cell viability 2016-06-29T19:15:29Z A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions. OMP:0007391 inviable microbial_phenotype siegele APO:0000112 inviable A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions. OMP:DAS presence of microbial cell viability 2016-07-01T22:15:10Z A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions. OMP:0007392 microbial_phenotype siegele A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions. FYPO:0000124 OMP:DAS absence of microbial cell viability 2016-07-01T22:15:10Z A cell viability phenotype where a microbial cell is not viable under the specified conditions. OMP:0007393 inviable inviable cell microbial_phenotype siegele FYPO:0000049 inviable cell A cell viability phenotype where a microbial cell is not viable under the specified conditions. FYPO:0000049 OMP:DAS APO:0000112 inviable lethality phenotype 2016-07-06T13:10:19Z A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host. OMP:0007394 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host. OMP:DAS presence of lethality 2016-07-06T13:12:26Z A lethality phenotype where infection by a microbe can cause death of the host. OMP:0007395 microbial_phenotype siegele A lethality phenotype where infection by a microbe can cause death of the host. OMP:DAS absence of lethality 2016-07-06T13:12:26Z A lethality phenotype where infection by a microbe does not cause death of the host. OMP:0007396 microbial_phenotype siegele A lethality phenotype where infection by a microbe does not cause death of the host. OMP:DAS altered lethality 2016-07-06T13:12:26Z A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control. OMP:0007397 microbial_phenotype siegele A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control. OMP:DAS decreased lethality 2016-07-06T13:12:26Z An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control. OMP:0007398 microbial_phenotype siegele An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control. OMP:DAS abolished lethality 2016-07-06T13:12:26Z A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished. OMP:0007399 microbial_phenotype siegele A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished. OMP:DAS increased lethality 2016-07-06T13:12:26Z An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control. OMP:0007400 microbial_phenotype siegele An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control. OMP:DAS ascospore formation phenotype 2016-07-06T14:29:13Z A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota). OMP:0007401 microbial_phenotype siegele A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota). GO:0030437 OMP:DAS presence of ascospore formation 2016-07-06T14:32:46Z APO:0000041 An ascospore formation phenotype where a microbe has the ability to form ascospores. FYPO:0000590 OMP:0007402 microbial_phenotype siegele normal sporulation FYPO:0000590 sporulation APO:0000041 An ascospore formation phenotype where a microbe has the ability to form ascospores. OMP:DAS altered microbe-host interaction 2016-07-09T13:22:30Z A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control. OMP:0007403 microbial_phenotype siegele A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control. OMP:DAS abolished resistance to killing by host 2016-07-09T13:24:32Z A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished. OMP:0007404 microbial_phenotype siegele A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished. OMP:DAS sexual sporulation phenotype 2016-07-09T14:14:51Z A sporulation phenotype related to the formation of spores derived from the products of meiosis. GO:0034293 OMP:0007405 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A sporulation phenotype related to the formation of spores derived from the products of meiosis. GO:0034293 OMP:DAS sexual sporulation GO:0034293 sexual reproduction phenotype 2016-07-09T14:24:56Z A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. GO:0019953 OMP:0007406 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. GO:0019953 OMP:DAS absence of ascospore formation 2016-07-09T14:47:12Z An ascospore formation phenotype where a microbe lacks the ability to form ascospores. OMP:0007407 microbial_phenotype siegele An ascospore formation phenotype where a microbe lacks the ability to form ascospores. OMP:DAS altered ascospore formation 2016-07-09T14:51:28Z An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control. OMP:0007408 abnormal sporulation microbial_phenotype siegele FYPO:0000121 abnormal sporulation An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control. OMP:DAS akinete morphology phenotype 2016-07-13T18:36:45Z A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria. OMP:0007409 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes are typically more resistant to dessication and other environmental stresses than vegetative cells. microbial_phenotype siegele A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria. OMP:DAS PMID:11948167 doi:10.1046/j.1469-8137.1999.00505.x altered akinete morphology 2016-07-13T18:43:01Z An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control. OMP:0007410 microbial_phenotype siegele An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control. OMP:DAS altered spore morphology 2016-07-13T18:45:02Z A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control. OMP:0007411 microbial_phenotype siegele A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control. OMP:DAS mating phenotype 2016-07-14T16:21:02Z A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types. FYPO:0000301 OMP:0007412 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation with cellular fusion is found in Saccharomyces cerevisiae. dsiegele mating response microbial_phenotype APO:0000032 mating response A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types. GO:0000747 OMP:DAS mating phenotype FYPO:0000301 conjugation phenotype 2016-07-14T16:25:26Z A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. GO:0000746 OMP:0007413 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation would be the transfer of a conjugative plasmid from a donor bacterium to a recipient bacterium. dsiegele microbial_phenotype A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. GO:0000746 OMP:DAS conjugation GO:0000746 absence of conjugation 2016-07-14T16:32:10Z A conjugation phenotype where mating does not occur through the process of conjugation. OMP:0007414 dsiegele microbial_phenotype A conjugation phenotype where mating does not occur through the process of conjugation. OMP:DAS presence of conjugation 2016-07-14T16:32:10Z A conjugation phenotype where mating occurs through the process of conjugation. OMP:0007415 dsiegele microbial_phenotype A conjugation phenotype where mating occurs through the process of conjugation. OMP:DAS altered conjugation 2016-07-14T16:32:10Z A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control. OMP:0007416 dsiegele microbial_phenotype A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control. OMP:DAS decreased conjugation 2016-07-14T16:36:35Z An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control. OMP:0007417 dsiegele microbial_phenotype An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control. OMP:DAS increased conjugation 2016-07-14T16:36:35Z An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control. OMP:0007418 dsiegele microbial_phenotype An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control. OMP:DAS abolished conjugation 2016-07-14T16:36:35Z A decreased conjugation phenotype where conjugation is abolished. OMP:0007419 dsiegele microbial_phenotype A decreased conjugation phenotype where conjugation is abolished. OMP:DAS increased akinete formation 2016-07-16T16:44:37Z An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control. OMP:0007420 microbial_phenotype siegele An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control. OMP:DAS decreased akinete formation 2016-07-16T16:44:37Z An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control. OMP:0007421 microbial_phenotype siegele An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control. OMP:DAS abolished akinete formation 2016-07-16T16:44:37Z A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished. OMP:0007422 microbial_phenotype siegele A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished. OMP:DAS decreased budding frequency 2016-07-16T16:56:11Z A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control. OMP:0007423 budding index microbial_phenotype siegele A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control. APO:0000089 OMP:DAS increased budding frequency 2016-07-16T16:58:06Z An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control. OMP:0007424 budding index microbial_phenotype siegele APO:0000089 An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control. OMP:DAS absence of schizogeny 2016-07-16T17:12:16Z A schizogeny phenotype where an organism does not reproduce by the process of schizogeny. OMP:0007425 microbial_phenotype siegele A schizogeny phenotype where an organism does not reproduce by the process of schizogeny. OMP:DAS increased schizogeny 2016-07-16T17:14:28Z An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control. OMP:0007426 microbial_phenotype siegele An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control. OMP:DAS decreased schizogeny 2016-07-16T17:14:28Z An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control. OMP:0007427 microbial_phenotype siegele An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control. OMP:DAS abolished schizogeny 2016-07-16T17:14:28Z A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished. OMP:0007428 microbial_phenotype siegele A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished. OMP:DAS increased asexual spore formation 2016-07-19T15:37:25Z An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control. OMP:0007429 microbial_phenotype siegele An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control. OMP:DAS decreased asexual spore formation 2016-07-19T15:37:25Z An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control. OMP:0007430 microbial_phenotype siegele An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control. OMP:DAS abolished asexual spore formation 2016-07-19T15:37:25Z A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished. OMP:0007431 microbial_phenotype siegele A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished. OMP:DAS altered number of flagella 2016-07-20T15:45:00Z An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control. OMP:0007432 microbial_phenotype siegele An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control. OMP:DAS presence of sexual sporulation 2016-07-27T19:29:30Z A sexual sporulation phenotype where an organism is able to produce sexual spores. OMP:0007433 microbial_phenotype siegele A sexual sporulation phenotype where an organism is able to produce sexual spores. OMP:DAS absence of sexual sporulation 2016-07-27T19:29:30Z A sexual sporulation phenotype where an organism is not able to produce sexual spores. OMP:0007434 microbial_phenotype siegele A sexual sporulation phenotype where an organism is not able to produce sexual spores. OMP:DAS altered sexual sporulation 2016-07-27T19:29:30Z A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control. OMP:0007435 microbial_phenotype siegele A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control. OMP:DAS increased sexual sporulation 2016-07-27T19:29:30Z An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control. OMP:0007436 microbial_phenotype siegele An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control. OMP:DAS decreased sexual sporulation 2016-07-27T19:29:30Z An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control. OMP:0007437 microbial_phenotype siegele An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control. OMP:DAS abolished sexual sporulation 2016-07-27T19:29:30Z A decreased sexual sporulation phenotype where the formation of sexual spores is abolished. OMP:0007438 microbial_phenotype siegele A decreased sexual sporulation phenotype where the formation of sexual spores is abolished. OMP:DAS presence of sexual reproduction 2016-07-27T19:32:00Z A sexual reproduction phenotype where an organism is able to reproduce sexually. OMP:0007439 microbial_phenotype siegele A sexual reproduction phenotype where an organism is able to reproduce sexually. OMP:DAS absence of sexual reproduction 2016-07-27T19:32:00Z A sexual reproduction phenotype where an organism is not able to reproduce sexually. OMP:0007440 microbial_phenotype siegele A sexual reproduction phenotype where an organism is not able to reproduce sexually. OMP:DAS altered sexual reproduction 2016-07-27T19:32:00Z A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control. OMP:0007441 microbial_phenotype siegele A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control. OMP:DAS presence of lethality in mice 2016-07-27T22:27:42Z A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus). OMP:0007442 microbial_phenotype siegele A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus). OMP:DAS presence of lethality in immunocompromised mice 2016-07-27T22:27:43Z A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus). OMP:0007443 microbial_phenotype siegele A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus). OMP:DAS absence of lethality in mice 2016-07-27T22:28:22Z An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus). OMP:0007444 microbial_phenotype siegele An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus). OMP:DAS absence of lethality in immunocompromised mice 2016-07-27T22:28:22Z An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus). OMP:0007445 microbial_phenotype siegele An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus). OMP:DAS decreased lethality in mice 2016-07-27T22:29:04Z A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. OMP:0007446 microbial_phenotype siegele A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. OMP:DAS decreased lethality in immunocompromised mice 2016-07-27T22:31:31Z A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control. OMP:0007447 microbial_phenotype siegele A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control. OMP:DAS abolished lethality in mice 2016-07-27T22:33:19Z A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished. OMP:0007448 microbial_phenotype siegele A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished. OMP:DAS abolished lethality in immunocompromised mice 2016-07-27T22:33:19Z A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished. OMP:0007449 microbial_phenotype siegele A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished. OMP:DAS increased lethality in mice 2016-07-27T22:40:08Z A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. OMP:0007450 microbial_phenotype siegele A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. OMP:DAS increased lethality in immunocompromised mice 2016-07-27T22:40:08Z A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control. OMP:0007451 microbial_phenotype siegele A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control. OMP:DAS presence of survival in macrophage 2016-08-08T14:58:53Z A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages. OMP:0007452 dsiegele microbial_phenotype A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages. OMP:DAS absence of survival in macrophage 2016-08-08T15:15:44Z OMP:0007453 dsiegele microbial_phenotype altered survival in macrophage 2016-08-08T15:16:09Z OMP:0007454 dsiegele microbial_phenotype survival in macrophage phenotype 2016-08-08T15:17:42Z OMP:0007455 dsiegele microbial_phenotype population viability phenotype 2016-08-10T14:51:48Z A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce. OMP:0007456 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce. FYPO:0002057 OMP:DAS viable cell population 2016-08-10T14:56:12Z A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions. FYPO:0002058 OMP:0007457 dsiegele microbial_phenotype A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions. OMP:DAS viable cell population FYPO:0002058 nonviable cell population 2016-08-10T14:56:12Z A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions. FYPO:0002059 OMP:0007458 dsiegele inviable cell population microbial_phenotype inviable cell population FYPO:0002059 A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions. FYPO:0002059 OMP:DAS altered cell population viability 2016-08-10T14:56:12Z A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control. OMP:0007459 dsiegele microbial_phenotype A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control. OMP:DAS viable vegetative cell population 2016-08-10T15:00:12Z A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle. FYPO:0002060 OMP:0007460 dsiegele microbial_phenotype viable vegetative cell population FYPO:0002060 A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle. FYPO:0002060 OMP:DAS nonviable vegetative cell population 2016-08-10T15:16:25Z A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle. FYPO:0002061 OMP:0007461 dsiegele inviable vegetative cell population microbial_phenotype A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle. FYPO:0002061 OMP:DAS inviable vegetative cell population FYPO:0002061 colonization of invertebrate host phenotype 2016-09-04T21:42:45Z A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host. OMP:0007462 colonization of silkworm (Bombyx mori) microbial_phenotype siegele A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host. OMP:DAS TaxonomyID:7091 colonization of silkworm (Bombyx mori) presence of flocculation 2016-09-12T14:35:40Z A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells. APO:0000065 OMP:0007463 dsiegele microbial_phenotype A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells. OMP:DAS flocculation APO:0000065 absence of flocculation 2016-09-12T14:35:40Z A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells. OMP:0007464 dsiegele microbial_phenotype A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells. OMP:DAS altered flocculation 2016-09-12T14:35:40Z A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control. OMP:0007465 dsiegele microbial_phenotype A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control. OMP:JG increased flocculation 2016-09-12T14:35:40Z An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control. OMP:0007466 dsiegele microbial_phenotype An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control. OMP:JG decreased flocculation 2016-09-12T14:35:40Z An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control. OMP:0007467 dsiegele microbial_phenotype An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control. OMP:JG abolished flocculation 2016-09-12T14:35:40Z A decreased flocculation phenotype where flocculation is abolished. OMP:0007468 dsiegele microbial_phenotype A decreased flocculation phenotype where flocculation is abolished. OMP:JG altered liquid culture morphology 2016-09-12T15:14:45Z A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control. OMP:0007469 dsiegele microbial_phenotype A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control. OMP:DAS altered population morphology 2016-09-12T15:16:19Z A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control. OMP:0007470 dsiegele microbial_phenotype A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control. OMP:DAS increased ascospore formation 2016-09-13T14:35:10Z An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control. OMP:0007471 dsiegele microbial_phenotype An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control. OMP:DAS decreased ascospore formation 2016-09-13T14:35:10Z An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control. OMP:0007472 dsiegele microbial_phenotype An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control. OMP:DAS abolished ascospore formation 2016-09-13T14:35:10Z An altered ascospore formation phenotype where the formation of ascospores is abolished. FYPO:0000583 OMP:0007473 dsiegele microbial_phenotype An altered ascospore formation phenotype where the formation of ascospores is abolished. OMP:DAS abolished sporulation FYPO:0000583 phenolic antimicrobial agent resistance phenotype 2016-09-19T16:00:17Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. OMP:0007474 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dsiegele gilvusmycin antimicrobial agent resistance phenotype microbial_phenotype phenol antimicrobial agent resistance phenotype phenols antimicrobial agent sensitivity phenotype triclosan antimicrobial agent resistance phenotype CHEBI:65964 gilvusmycin antimicrobial agent resistance phenotype CHEBI:15882 phenol antimicrobial agent resistance phenotype CHEBI:164200 triclosan antimicrobial agent resistance phenotype CHEBI:33853 phenols antimicrobial agent sensitivity phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. CHEBI:33853 OMP:DAS resistant to phenols 2016-09-19T16:49:20Z A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols. OMP:0007475 dsiegele microbial_phenotype A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols. OMP:JG not resistant to phenols 2016-09-19T16:49:20Z A phenols resistance phenotype where an organism or cell is sensitive to phenols. OMP:0007476 dsiegele microbial_phenotype A phenols resistance phenotype where an organism or cell is sensitive to phenols. OMP:JG altered resistance to phenols 2016-09-19T16:49:20Z A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control. OMP:0007477 dsiegele microbial_phenotype A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control. OMP:JG increased resistance to phenols 2016-09-19T16:49:20Z An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control. OMP:0007478 dsiegele microbial_phenotype An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control. OMP:JG decreased resistance to phenols 2016-09-19T16:49:20Z An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control. OMP:0007479 dsiegele microbial_phenotype An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control. OMP:JG abolished resistance to phenols 2016-09-19T16:49:20Z A decreased resistance to phenols phenotype where resistance to phenols is abolished. OMP:0007480 dsiegele microbial_phenotype A decreased resistance to phenols phenotype where resistance to phenols is abolished. OMP:JG quaternary ammonium salts antimicrobial agent resistance phenotype 2016-09-19T17:10:16Z An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups. OMP:0007481 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. benzalkonium chloride resistance phenotype dsiegele methyl green resistance phenotype microbial_phenotype quaternium-15 resistance phenotype CHEBI:59607 quaternium-15 resistance phenotype CHEBI:3020 benzalkonium chloride resistance phenotype An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups. CHEBI:35273 OMP:DAS CHEBI:CHEBI:87649 methyl green resistance phenotype resistant to quaternary ammonium salt antimicrobial agent 2016-09-19T17:10:16Z A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts. OMP:0007482 dsiegele microbial_phenotype A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts. OMP:JG not resistant to quaternary ammonium salt antimicrobial agent 2016-09-19T17:10:16Z A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts. OMP:0007483 dsiegele microbial_phenotype A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts. OMP:JG altered resistance to quaternary ammonium salt antimicrobial agent 2016-09-19T17:10:16Z A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control. OMP:0007484 dsiegele microbial_phenotype A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control. OMP:JG increased resistance to quaternary ammonium salt antimicrobial agent 2016-09-19T17:10:16Z An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control. OMP:0007485 dsiegele microbial_phenotype An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control. OMP:JG decreased resistance to quaternary ammonium salt antimicrobial agent 2016-09-19T17:10:16Z An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control. OMP:0007486 dsiegele microbial_phenotype An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control. OMP:JG abolished resistance to quaternary ammonium salt antimicrobial agent 2016-09-19T17:10:16Z A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished. OMP:0007487 dsiegele microbial_phenotype A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished. OMP:JG absence of motility by gliding 2016-09-24T23:00:10Z An absence of motility phenotype where a microbe is not capable of gliding motility. OMP:0007488 microbial_phenotype siegele An absence of motility phenotype where a microbe is not capable of gliding motility. OMP:DAS absence of motility by swarming 2016-09-24T23:00:10Z An absence of motility phenotype where a microbe is not capable of swarming motility. OMP:0007489 microbial_phenotype siegele An absence of motility phenotype where a microbe is not capable of swarming motility. OMP:DAS absence of motility by swimming 2016-09-24T23:00:10Z An absence of motility phenotype where a microbe is not capable of swimming motility. OMP:0007490 microbial_phenotype siegele An absence of motility phenotype where a microbe is not capable of swimming motility. OMP:DAS absence of motility by twitching 2016-09-24T23:00:10Z An absence of motility phenotype where a microbe is not capable of twitching motility. OMP:0007491 microbial_phenotype siegele An absence of motility phenotype where a microbe is not capable of twitching motility. OMP:DAS altered motility by gliding 2016-09-24T23:01:37Z A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control. OMP:0007492 microbial_phenotype siegele A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control. OMP:DAS altered cell motility by twitching 2016-09-24T23:01:37Z A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control. OMP:0007493 microbial_phenotype siegele A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control. OMP:DAS abolished motility by twitching 2016-09-24T23:04:50Z A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished. OMP:0007494 microbial_phenotype siegele A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished. OMP:DAS epoxide resistance phenotype 2016-09-25T12:02:01Z An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring. OMP:0007495 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cerulenin resistance phenotype microbial_phenotype siegele An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring. CHEBI:32955 OMP:DAS CHEBI:171741 cerulenin resistance phenotype resistant to an epoxide 2016-09-25T12:11:27Z An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide. OMP:0007496 microbial_phenotype siegele An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide. OMP:JG not resistant to an epoxide 2016-09-25T12:11:27Z An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide. OMP:0007497 microbial_phenotype siegele An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide. OMP:JG altered epoxide resistance 2016-09-25T12:11:27Z An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control. OMP:0007498 microbial_phenotype siegele An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control. OMP:JG increased resistance to an epoxide 2016-09-25T12:12:32Z An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control. OMP:0007499 microbial_phenotype siegele An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control. OMP:JG decreased resistance to an epoxide 2016-09-25T12:12:32Z An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control. OMP:0007500 microbial_phenotype siegele An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control. OMP:JG abolished resistance to an epoxide 2016-09-25T12:12:32Z A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished. OMP:0007501 microbial_phenotype siegele A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished. OMP:JG altered capsule morphology 2016-09-25T13:45:05Z A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control. OMP:0007502 microbial_phenotype siegele A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control. OMP:DAS altered capsule size 2016-09-25T13:47:16Z An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control. OMP:0007503 microbial_phenotype siegele An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control. OMP:DAS Increased capsule size 2016-09-25T13:49:19Z An altered capsule size phenotype where the size of the capsule is increased relative to a designated control. OMP:0007504 microbial_phenotype siegele An altered capsule size phenotype where the size of the capsule is increased relative to a designated control. OMP:DAS decreased capsule size 2016-09-25T13:49:19Z An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control. OMP:0007505 microbial_phenotype siegele An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control. OMP:DAS titan cell morphology phenotype 2016-09-25T22:33:27Z A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. FAO:0000063 OMP:0007506 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. FAO:0000063 OMP:DAS PMID:21821718 titan cell FAO:0000063 presence of titan cells 2016-09-25T23:28:19Z A titan cell phenotype where a microbe is able to form titan cells. OMP:0007507 microbial_phenotype siegele A titan cell phenotype where a microbe is able to form titan cells. OMP:DAS absence of titan cells 2016-09-25T23:28:19Z A titan cell phenotype where a microbe cannot form titan cells. OMP:0007508 microbial_phenotype siegele A titan cell phenotype where a microbe cannot form titan cells. OMP:DAS altered titan cell morphology 2016-09-25T23:28:19Z A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control. OMP:0007509 microbial_phenotype siegele A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control. OMP:DAS altered titan cell formation 2016-09-25T23:32:51Z A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control. OMP:0007510 microbial_phenotype siegele A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control. OMP:DAS ascospore morphology phenotype 2016-12-19T14:07:15Z A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete. OMP:0007511 microbial_phenotype siegele A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete. CL:0000607 FAO:0000020 OMP:DAS altered ascospore morphology 2016-12-19T14:12:30Z An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control. OMP:0007512 microbial_phenotype siegele An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control. OMP:DAS altered endospore morphology 2016-12-19T14:16:33Z An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control. OMP:0007513 microbial_phenotype siegele An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control. OMP:DAS decreased negative osmotaxis 2017-02-20T15:38:16Z A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control. OMP:0007514 dsiegele microbial_phenotype A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS decreased positive osmotaxis 2017-02-20T15:38:16Z A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control. OMP:0007515 dsiegele microbial_phenotype A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS population growth in high osmolarity phenotype 2017-02-20T15:58:54Z A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both. OMP:0007516 dsiegele microbial_phenotype A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both. OMP:DAS presence of population growth in high osmolarity 2017-02-20T15:59:09Z A population growth phenotype where a microbial population can grow in conditions of high osmolarity. OMP:0007517 dsiegele microbial_phenotype normal growth during cellular response to high osmolarity FYPO:0001022 normal growth during cellular response to high osmolarity A population growth phenotype where a microbial population can grow in conditions of high osmolarity. OMP:DAS absence of population growth in high osmolarity 2017-02-20T15:59:09Z A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity. OMP:0007518 dsiegele microbial_phenotype A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity. OMP:DAS altered population growth in high osmolarity 2017-02-20T15:59:09Z A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control. OMP:0007519 dsiegele microbial_phenotype A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control. OMP:DAS increased population growth in high osmolarity 2017-02-20T16:03:09Z An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both. OMP:0007520 dsiegele microbial_phenotype An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both. OMP:DAS decreased population growth in high osmolarity 2017-02-20T16:03:09Z An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both. OMP:0007521 dsiegele microbial_phenotype An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both. OMP:DAS abolished population growth in high osmolarity 2017-02-20T16:03:16Z A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity. OMP:0007522 dsiegele microbial_phenotype A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity. OMP:DAS altered population growth range 2017-02-20T16:06:25Z A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control. OMP:0007523 dsiegele microbial_phenotype A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control. OMP:DAS presence of lethality in an invertebrate host 2017-02-20T16:43:30Z A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host. OMP:0007524 dsiegele microbial_phenotype A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host. OMP:DAS absence of lethality in an invertebrate host 2017-02-20T16:46:31Z An absence of lethality phenotype where the infected host is an invertebrate. OMP:0007525 dsiegele microbial_phenotype An absence of lethality phenotype where the infected host is an invertebrate. OMP:DAS altered lethality in an invertebrate host 2017-02-20T16:48:08Z An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control. OMP:0007526 dsiegele microbial_phenotype An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control. OMP:DAS altered lethality in an amoeba host 2017-02-20T16:49:04Z An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control. OMP:0007527 dsiegele microbial_phenotype An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control. OMP:DAS presence of lethality in an amoeba host 2017-02-20T16:54:13Z A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host. OMP:0007528 dsiegele microbial_phenotype A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host. OMP:DAS absence of lethality in an amoeba host 2017-02-20T16:55:05Z An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host. OMP:0007529 dsiegele microbial_phenotype An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host. OMP:DAS decreased lethality in an amoeba host 2017-02-20T16:57:15Z An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control. OMP:0007530 dsiegele microbial_phenotype An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control. OMP:DAS increased lethality in an amoeba host 2017-02-20T16:57:15Z An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control. OMP:0007531 dsiegele microbial_phenotype An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control. OMP:DAS abolished lethality in an amoeba host 2017-02-20T16:59:35Z A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished. OMP:0007532 dsiegele microbial_phenotype A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished. OMP:DAS urea derivative resistance phenotype 2017-02-24T13:14:38Z An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea. OMP:0007195 OMP:0007533 The original term and its children were deemed to be too granular and were replaced with OMP:0007195 ! chemical resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. OMP:0007247 resistant to a chemical OMP:0007246 not resistant to a chemical OMP:0007248 altered chemical resistance OMP:0007249 decreased resistance to a chemical OMP:0007883 abolished chemical resistance OMP:0007250 increased resistance to a chemical microbial_phenotype siegele true An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea. CHEBI:47857 OMP:DAS resistant to a urea derivative 2017-02-24T13:18:35Z A ureas resistance phenotype where a microbe is resistant to a derivative of urea. OMP:0007247 OMP:0007534 microbial_phenotype siegele true A ureas resistance phenotype where a microbe is resistant to a derivative of urea. CHEBI:47857 OMP:DAS not resistant to a urea derivative 2017-02-24T13:18:35Z A ureas resistance phenotype where a microbe is not resistant to a derivative of urea. OMP:0007246 OMP:0007535 The original term was deemed to be too granular. microbial_phenotype siegele true A ureas resistance phenotype where a microbe is not resistant to a derivative of urea. CHEBI:47857 OMP:DAS altered resistance to a urea derivative 2017-02-24T13:18:35Z A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control. OMP:0007248 OMP:0007536 The original term was deemed to be too granular and was replaced with OMP:0007248 ! altered resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. microbial_phenotype siegele true A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control. CHEBI:47857 OMP:DAS increased resistance to a urea derivative 2017-02-24T13:19:13Z An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control. OMP:0007250 OMP:0007537 The original term was deemed to be too granular and were replaced with OMP:0007250 ! increased resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. decreased sensitivity to a urea derivative decreased sensitivity to hydroxyurea microbial_phenotype siegele true An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control. OMP:DAS CHEBI:44423 decreased sensitivity to hydroxyurea decreased resistance to a urea derivative 2017-02-24T13:19:13Z An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control. OMP:0007249 OMP:0007538 The original term was deemed to be too granular and were replaced with OMP:0007249 decreased resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. increased sensitivity to a urea derivative increased sensitivity to hydroxyurea microbial_phenotype siegele true An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control. OMP:DAS CHEBI:44423 increased sensitivity to hydroxyurea abolished resistance to a urea derivative 2017-02-24T13:19:20Z A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished. OMP:0007539 OMP:0007883 The original term was deemed to be too granular and were replaced with OMP:0007883 ! abolished resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. microbial_phenotype siegele true A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished. OMP:DAS virus phenotype 2017-04-19T13:39:46Z A microbial phenotype related to the form and structure of a virus. OMP:0007540 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype related to the form and structure of a virus. OMP:DR virion morphology phenotype 2017-04-19T13:42:41Z A virus phenotype related to the form and structure of a virion. OMP:0007541 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A virus phenotype related to the form and structure of a virion. OMP:DR haploid fruiting phenotype 2017-05-29T16:17:29Z An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating. GO:0000905 OMP:0007542 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. homokaryotic fruiting phenotype microbial_phenotype monokaryotic fruiting phenotype siegele sporocarp development involved in asexual reproduction GO:0000905 An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating. OMP:DAS presence of haploid fruiting 2017-05-29T16:19:54Z A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting. OMP:0007543 microbial_phenotype presence of monokaryotic fruiting siegele A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting. OMP:DAS absence of haploid fruiting 2017-05-29T16:21:37Z A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting. OMP:0007544 absence of monokaryotic fruiting microbial_phenotype siegele A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting. OMP:DAS altered haploid fruiting 2017-05-29T16:24:41Z A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control. OMP:0007545 altered monokaryotic fruiting microbial_phenotype siegele A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control. OMP:DAS increased haploid fruiting 2017-05-29T16:27:37Z An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control. OMP:0007546 increased monokaryotic fruiting microbial_phenotype siegele An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control. OMP:DAS decreased haploid fruiting 2017-05-29T16:27:37Z An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control. OMP:0007547 decreased monokaryotic fruiting microbial_phenotype siegele An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control. OMP:DAS abolished haploid fruiting 2017-05-29T16:27:37Z A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished. OMP:0007548 abolished monokaryotic fruiting microbial_phenotype siegele A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished. OMP:DAS altered biological process phenotype 2017-05-29T16:35:44Z OMP:0007351 OMP:0007549 This term was made obsolete because it is a duplicate of OMP:0007351. microbial_phenotype siegele true OMP:DAS This term was made obsolete because it is a duplicate of OMP:0007351. altered population growth - duplicate term 2017-05-29T16:37:18Z DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations. OMP:0007157 OMP:0007550 microbial_phenotype siegele true DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations. OMP:DAS increased rate of haploid fruiting 2017-05-29T17:45:32Z An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. OMP:0007551 increased rate of monokaryotic fruiting microbial_phenotype siegele An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. OMP:DAS decreased rate of haploid fruiting 2017-05-29T17:48:15Z A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. OMP:0007552 decreased rate of monokaryotic fruiting microbial_phenotype siegele A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. OMP:DAS clamp cell morphology phenotype 2017-05-30T14:37:57Z A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell. OMP:0007553 microbial_phenotype siegele A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell. DOI:10.1007/978-3-642-22916-9_10 FAO:0000060 OMP:DAS titan cell formation phenotype 2017-05-30T15:28:59Z A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. OMP:0007554 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. FAO:0000063 OMP:DAS PMID:21821718 multicellular microorganism morphology phenotype 2017-05-30T15:39:20Z A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism. OMP:0007555 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism. OMP:DAS hyphal morphology phenotype 2017-05-30T16:03:57Z A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall. OMP:0007556 microbial_phenotype siegele A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall. OMP:DAS filamentous growth of a multicellular organism phenotype 2017-05-30T16:34:41Z A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape. OMP:0007557 hyphal growth phenotype microbial_phenotype siegele A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape. GO:0044181 OMP:DAS clamp cell formation phenotype 2017-05-30T16:44:54Z A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae. OMP:0007558 microbial_phenotype siegele A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae. OMP:DAS PMID:15162390 clamp connection morphology phenotype 2017-05-30T17:04:06Z OMP:0007559 microbial_phenotype siegele conidiation phenotype 2017-06-19T15:29:04Z An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores. OMP:0007560 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores. FAO:0000024 GO:0048315 OMP:DAS meiotic nuclear division phenotype 2017-06-20T15:55:03Z A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle. OMP:0007561 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. abnormal meiosis dsiegele microbial_phenotype normal meiosis A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle. GO:0140013 OMP:DAS FYPO:0000478 normal meiosis FYPO:0000051 abnormal meiosis presence of meiotic nuclear division 2017-06-20T16:09:31Z A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur. FYPO:0000478 OMP:0007562 dsiegele microbial_phenotype A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur. GO:00140013 OMP:DAS normal meiosis FYPO:0000478 absence of meiotic nuclear division 2017-06-20T16:09:31Z A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent. OMP:0007563 dsiegele microbial_phenotype A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent. OMP:DAS altered meiotic nuclear division 2017-06-20T16:09:31Z A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control. OMP:0007564 dsiegele microbial_phenotype A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control. OMP:DAS abolished meiotic nuclear division 2017-06-20T16:12:11Z An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished. FYPO:0000474 OMP:0007565 dsiegele microbial_phenotype abolished meiosis FYPO:0000474 An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished. FYPO:0000474 OMP:DAS abolished meiosis I 2017-06-20T16:18:05Z An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur. FYPO:0003378 OMP:0007566 dsiegele microbial_phenotype abolished meiosis I FYPO:0003378 An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur. GO:0007127 OMP:DAS abolished meiosis II 2017-06-20T16:18:05Z An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur. FYPO:0003379 OMP:0007567 dsiegele microbial_phenotype An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur. GO:0007135 OMP:DAS abolished meiosis II FYPO:0003379 resistance to stress phenotype 2017-06-21T14:34:05Z A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress. OMP:0007568 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. Use a descendant of this term if you have assayed growth of cells exposed to a stress in culture. If you have assayed the response to a stress at the subcellular or molecular level, consider annotating to one of the descendants of 'response to stress phenotype' (OMP:0000173). dsiegele microbial_phenotype resistant to a stress sensitive to a stress A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress. FYPO:0002046 OMP:DAS resistance to oxidative stress phenotype 2017-06-21T14:51:26Z A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species. OMP:0007569 dsiegele microbial_phenotype resistance to hydrogen peroxide stress A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species. OMP:DAS presence of resistance to oxidative stress 2017-06-21T14:58:47Z A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress. OMP:0007570 dsiegele microbial_phenotype resistant to oxidative stress A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress. OMP:DAS absence of resistance to oxidative stress 2017-06-21T14:59:22Z A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress. FYPO:0000726 OMP:0007571 dsiegele microbial_phenotype sensitive to oxidative stress A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress. OMP:DAS sensitive to oxidative stress FYPO:0000726 altered resistance to stress 2017-06-21T15:00:53Z A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control. OMP:0007572 dsiegele microbial_phenotype A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control. OMP:DAS resistance to pH shock phenotype 2017-06-21T16:00:11Z A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5. OMP:0007573 dsiegele microbial_phenotype A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5. OMP:DAS resistance to alkaline pH stress phenotype 2017-06-21T16:01:32Z A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5). OMP:0007574 dsiegele microbial_phenotype A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5). OMP:DAS resistance to dessication stress phenotype 2017-06-21T16:05:55Z A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress. OMP:0007575 dsiegele microbial_phenotype A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress. OMP:DAS resistance to radiation stress phenotype 2017-06-21T16:08:28Z A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation. OMP:0007576 dsiegele microbial_phenotype A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation. OMP:DAS resistance to chemical stress phenotype 2017-06-21T16:14:11Z A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical. OMP:0007577 dsiegele microbial_phenotype A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical. OMP:DAS resistance to cold shock phenotype 2017-06-25T18:41:35Z A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe. OMP:0007578 microbial_phenotype siegele A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe. FYPO:0006084 OMP:DAS resistance to heat shock phenotype 2017-06-25T18:42:01Z A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe. OMP:0007579 microbial_phenotype siegele A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe. FYPO:0002045 OMP:DAS presence of resistance to cold shock 2017-06-25T18:48:47Z A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe. OMP:0007580 cold resistant microbial_phenotype resistant to low temperature siegele A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe. OMP:DAS absence of resistance to cold shock 2017-06-25T18:48:47Z A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe. OMP:0007581 cold sensitive cold sensitivity microbial_phenotype siegele A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe. OMP:DAS YPO:0000148 cold sensitive APO:0000148 cold sensitivity altered resistance to cold shock 2017-06-25T18:48:47Z A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control. OMP:0007582 microbial_phenotype siegele A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control. OMP:DAS presence of resistance to heat shock 2017-06-25T18:54:38Z A resistance to heat shock phenotype where a microbial population is resistant to heat shock. OMP:0007583 microbial_phenotype resistance to heat shock resistant to heat shock siegele FYPO:0002045 resistance to heat shock A resistance to heat shock phenotype where a microbial population is resistant to heat shock. OMP:DAS absence of resistance to heat shock 2017-06-25T18:54:39Z A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock. OMP:0007584 microbial_phenotype sensitive to heat shock siegele A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock. OMP:DAS altered resistance to heat 2017-06-25T18:54:39Z A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control. OMP:0007585 microbial_phenotype siegele A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control. OMP:DAS altered resistance to chemical stress 2017-06-25T19:35:57Z A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control. OMP:0007586 microbial_phenotype siegele A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control. OMP:DAS increased resistance to cold shock 2017-06-25T22:21:53Z An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control. OMP:0007587 microbial_phenotype siegele An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control. OMP:DAS decreased resistance to cold shock 2017-06-25T22:21:53Z An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control. OMP:0007588 microbial_phenotype siegele An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control. OMP:DAS abolished resistance to cold shock 2017-06-25T22:21:53Z A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished. OMP:0007589 microbial_phenotype siegele A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished. OMP:DAS increased resistance to heat 2017-06-25T22:26:03Z An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control. FYPO:0002626 OMP:0007590 microbial_phenotype siegele An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control. OMP:DAS resistance to heat FYPO:0002626 decreased resistance to heat shock 2017-06-25T22:26:03Z An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control. OMP:0007591 microbial_phenotype siegele An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control. OMP:DAS abolished resistance to heat shock 2017-06-25T22:26:03Z A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished. OMP:0007592 microbial_phenotype siegele A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished. OMP:DAS resistance to freeze-thaw stress phenotype 2017-06-26T17:11:33Z A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing. OMP:0007593 microbial_phenotype siegele A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing. OMP:DAS altered resistance to radiation stress 2017-06-26T20:24:54Z A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control. OMP:0007594 microbial_phenotype siegele A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control. OMP:DAS presence of population growth 2017-06-27T12:19:09Z A population growth phenotype where a microbial population is able to reproduce. OMP:0007595 microbial_phenotype siegele A population growth phenotype where a microbial population is able to reproduce. OMP:das absence of population growth 2017-06-27T12:19:09Z A population growth phenotype where the number of individuals in a microbial population does not increase. OMP:0007596 microbial_phenotype siegele A population growth phenotype where the number of individuals in a microbial population does not increase. OMP:DAS increased population growth 2017-06-27T12:40:34Z An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control. OMP:0007597 microbial_phenotype siegele An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control. OMP:DAS decreased population growth 2017-06-27T12:40:34Z An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control. OMP:0007598 microbial_phenotype siegele An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control. OMP:DAS abolished population growth 2017-06-27T12:40:34Z A decreased population growth phenotype where reproduction of a microbial population is abolished. OMP:0007599 microbial_phenotype siegele A decreased population growth phenotype where reproduction of a microbial population is abolished. OMP:DAS presence of chromosome segregation 2017-06-27T17:34:40Z A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. OMP:0007600 microbial_phenotype siegele A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. OMP:DAS absence of chromosome segregation 2017-06-27T17:34:40Z A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells. OMP:0007601 microbial_phenotype siegele A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells. OMP:DAS DNA break phenotype 2017-06-27T21:46:34Z A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA. OMP:0007602 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA. OMP:DAS presence of DNA breaks 2017-06-27T21:49:30Z A DNA break phenotype where breaks in chromosomal DNA occur. OMP:0007603 microbial_phenotype siegele A DNA break phenotype where breaks in chromosomal DNA occur. OMP:DAS absence of DNA breaks 2017-06-27T21:49:30Z A DNA break phenotype where breaks in chromosomal DNA don't occur. OMP:0007604 microbial_phenotype siegele A DNA break phenotype where breaks in chromosomal DNA don't occur. OMP:DAS altered frequency of DNA breaks 2017-06-27T21:49:30Z A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control. OMP:0007605 microbial_phenotype siegele A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control. OMP:DAS increased frequency of DNA breaks 2017-06-27T21:52:51Z An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control. OMP:0007606 microbial_phenotype siegele An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control. OMP:DAS decreased frequency of DNA breaks 2017-06-27T21:52:51Z An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control. OMP:0007607 microbial_phenotype siegele An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control. OMP:DAS abolished DNA breaks 2017-06-27T21:52:51Z A decreased frequency of DNA breaks phenotype where DNA breaks are abolished. OMP:0007608 microbial_phenotype siegele A decreased frequency of DNA breaks phenotype where DNA breaks are abolished. OMP:DAS presence of single-strand DNA breaks 2017-06-27T21:53:37Z A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur. OMP:0007609 microbial_phenotype siegele A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur. OMP:DAS presence of double-strand DNA breaks 2017-06-27T21:53:37Z A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur. OMP:0007610 microbial_phenotype siegele A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur. OMP:DAS absence of single-strand DNA breaks 2017-06-27T21:54:07Z An absence of DNA breaks phenotype where single-strand DNA breaks don't occur. OMP:0007611 microbial_phenotype siegele An absence of DNA breaks phenotype where single-strand DNA breaks don't occur. OMP:DAS absence of double-strand DNA breaks 2017-06-27T21:54:07Z An absence of DNA breaks phenotype where double-strand DNA breaks don't occur. OMP:0007612 microbial_phenotype siegele An absence of DNA breaks phenotype where double-strand DNA breaks don't occur. OMP:DAS increased frequency of single-strand DNA breaks 2017-06-27T21:54:53Z An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control. OMP:0007613 microbial_phenotype siegele An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control. OMP:DAS increased frequency of double-strand DNA breaks 2017-06-27T21:54:53Z An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control. OMP:0007614 microbial_phenotype siegele An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control. OMP:DAS decreased frequency of single-strand DNA breaks 2017-06-27T21:55:25Z A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control. OMP:0007615 microbial_phenotype siegele A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control. OMP:DAS decreased frequency of double-strand DNA breaks 2017-06-27T21:55:25Z A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control. OMP:0007616 microbial_phenotype siegele A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control. OMP:DAS Holliday junction structure phenotype 2017-06-28T13:51:06Z A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA. OMP:0007617 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA. OMP:DAS presence of Holliday junction structures 2017-06-28T13:53:37Z A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA. OMP:0007618 microbial_phenotype siegele A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA. OMP:DAS absence of Holliday junction structures 2017-06-28T13:53:37Z A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA. OMP:0007619 microbial_phenotype siegele A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA. OMP:DAS altered frequency of Holliday junction structures 2017-06-28T13:53:37Z A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control. OMP:0007620 microbial_phenotype siegele A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control. OMP:DAS increased frequency of Holliday junction structures 2017-06-28T13:56:30Z An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control. OMP:0007621 microbial_phenotype siegele An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control. OMP:DAS decreased frequency of Holliday junction structures 2017-06-28T13:56:30Z An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control. OMP:0007622 microbial_phenotype siegele An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control. OMP:DAS abolished Holliday junction structures 2017-06-28T13:56:30Z A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished. OMP:0007623 microbial_phenotype siegele A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished. OMP:DAS presence of chitin in cell wall 2017-07-05T13:24:55Z A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029). APO:0000199 OMP:0007624 dsiegele microbial_phenotype chitin deposition APO:0000199 A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029). OMP:DAS absence of chitin in cell wall 2017-07-05T13:40:27Z A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029). OMP:0007625 dsiegele microbial_phenotype A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029). OMP:DAS altered cell wall chitin level 2017-07-05T13:42:09Z An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control. OMP:0007626 dsiegele microbial_phenotype An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control. OMP:DAS increased cell wall chitin level 2017-07-05T13:44:03Z An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control. OMP:0007627 dsiegele microbial_phenotype An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control. OMP:DAS decreased cell wall chitin level 2017-07-05T13:44:03Z An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control. OMP:0007628 dsiegele microbial_phenotype An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control. OMP:DAS abolished chitin in cell wall 2017-07-05T13:44:03Z A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished. OMP:0007629 dsiegele microbial_phenotype A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished. OMP:DAS altered cell wall protein level 2017-07-05T14:26:32Z An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected. OMP:0007630 dsiegele microbial_phenotype An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected. OMP:DAS increased cell wall protein level 2017-07-05T16:47:42Z An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control. OMP:0007631 dsiegele microbial_phenotype An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control. OMP:DAS cell phenotype 2017-07-05T16:09:49Z A microbial phenotype that is observed at the level of an individual cell. FYPO:0000002 OMP:0007632 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A microbial phenotype that is observed at the level of an individual cell. FYPO:0000002 OMP:DAS cell phenotype FYPO:0000002 cellular physical quality phenotype 2017-07-05T16:19:07Z A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component. FYPO:0000136 OMP:0007633 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component. FYPO:0000136 OMP:DAS cellular physical quality phenotype FYPO:0000136 altered level of substance in cell 2017-07-05T16:20:55Z A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control. OMP:0007634 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control. FYPO:0000989 OMP:DAS altered protein level 2017-07-05T16:24:26Z An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected. OMP:0007635 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected. FYPO:0000834 OMP:DAS altered polysaccharide level 2017-07-05T16:28:00Z An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control. OMP:0007636 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control. FYPO:0001085 OMP:DAS altered cellular physical quality phenotype 2017-07-05T16:31:01Z A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control. OMP:0007637 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. abnormal cellular physical quality phenotype dsiegele microbial_phenotype A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control. OMP:DAS FYPO:0004638 abnormal cellular physical quality phenotype altered cell phenotype 2017-07-05T16:32:45Z A phenotype observed at the level of an individual cell that is altered relative to a designated control. OMP:0007638 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A phenotype observed at the level of an individual cell that is altered relative to a designated control. OMP:DAS decreased cell wall protein level 2017-07-05T16:47:42Z An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control. OMP:0007639 dsiegele microbial_phenotype An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control. OMP:DAS abolished cell wall protein level 2017-07-05T16:47:42Z A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished. OMP:0007640 dsiegele microbial_phenotype A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished. OMP:DAS population growth yield phenotype 2017-07-11T02:11:36Z A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed. OMP:0007641 microbial_phenotype siegele A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed. OMP:DAS altered population growth yield 2017-07-11T02:22:26Z A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control. OMP:0007642 altered population density at growth saturation microbial_phenotype siegele A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control. OMP:DAS increased population growth yield 2017-07-11T02:24:32Z An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control. OMP:0007643 increased population density at growth saturation microbial_phenotype siegele An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control. OMP:DAS decreased population growth yield 2017-07-11T02:24:32Z An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control. OMP:0007644 decreased population density at growth saturation microbial_phenotype siegele An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control. OMP:DAS microbial lifestyle phenotype 2017-07-24T14:41:58Z A microbial phenotype related to the typical way of life of a microbe. OMP:0007645 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype related to the typical way of life of a microbe. OMP:DAS free-living lifestyle phenotype 2017-07-24T14:45:18Z A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities. Free-living lifestyle phenotypes may include the expression of flagella, sensing apparati used for photo- and chemotactic behaviour, and quorum sensing pathways. Please request more specific child terms, as needed. OMP:0007646 microbial_phenotype siegele A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities. OMP:DAS attached lifestyle phenotype 2017-07-24T14:59:31Z A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface. OMP:0007647 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like. anchored lifestyle phenotype microbial_phenotype sessile lifestyle phenotype siegele A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface. OMP:DAS presence of an attached lifestyle 2017-07-26T17:24:06Z An attached lifestyle phenotype where a microbe typically grows and reproduces while physically attached to a is the summative outcome of multiple phenotypes that, acting together, typically provide a microbe some advantage while competing for niche space while it is physically anchored to some portion of solid material. May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like. OMP:0007648 microbial_phenotype siegele mitomycin resistance phenotype 2017-08-01T19:36:13Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces. OMP:0007649 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. microbial_phenotype mitomycin C resistance phenotype siegele An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces. CHEBI:25357 OMP:DAS CHEBI:27504 mitomycin C resistance phenotype resistant to mitomycin 2017-08-01T19:40:50Z OMP:0007650 microbial_phenotype siegele not resistant to mitomycin 2017-08-01T19:40:50Z OMP:0007651 microbial_phenotype siegele altered mitomycin resistance 2017-08-01T19:40:50Z A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control. OMP:0007652 microbial_phenotype siegele A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control. OMP:DAS increased resistance to mitomycin 2017-08-01T19:42:07Z An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control. OMP:0007653 decreased sensitivity to mitomycin increased resistance to mitomycin C microbial_phenotype siegele An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control. OMP:DAS CHEBI:27504 increased resistance to mitomycin C CHEBI:25357 decreased sensitivity to mitomycin decreased resistance to mitomycin 2017-08-01T19:42:07Z An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control. OMP:0007654 decreased resistance to mitomycin C increased sensitivity to mitomycin increased sensitivity to mitomycin C microbial_phenotype siegele CHEBI:27504 increased sensitivity to mitomycin C CHEBI:27504 decreased resistance to mitomycin C CHEBI:25357 increased sensitivity to mitomycin An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control. OMP:DAS abolished resistance to mitomycin 2017-08-01T19:42:07Z A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished. OMP:0007655 microbial_phenotype siegele A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished. OMP:DAS level of substance in cell phenotype 2017-08-02T00:45:28Z OMP:0007656 microbial_phenotype siegele level of cellular reactive oxygen species phenotype 2017-08-02T00:47:58Z A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell. OMP:0007657 microbial_phenotype siegele A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell. FYPO:0003004 OMP:DAS presence of cellular reactive oxygen species 2017-08-02T00:49:40Z OMP:0007658 microbial_phenotype siegele absence of cellular reactive oxygen species 2017-08-02T00:49:40Z OMP:0007659 microbial_phenotype siegele altered level of cellular reactive oxygen species 2017-08-02T00:49:40Z A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control. OMP:0007660 microbial_phenotype siegele A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control. OMP:DAS increased level of cellular reactive oxygen species 2017-08-02T00:49:40Z An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control. OMP:0007661 microbial_phenotype siegele An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control. OMP:DAS decreased level of cellular reactive oxygen species 2017-08-02T00:49:40Z OMP:0007662 microbial_phenotype siegele abolished cellular reactive oxygen species 2017-08-02T00:49:40Z OMP:0007663 microbial_phenotype siegele bulging cell morphology 2017-09-28T10:15:36Z An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control. OMP:0007666 dsiegele microbial_phenotype An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control. OMP:DAS PMID:27238023 filamenting cell morphology 2017-09-28T10:36:55Z An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide. OMP:0007667 dsiegele microbial_phenotype An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide. OMP:DAS presence of transport 2017-10-02T15:29:18Z A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells. OMP:0007668 microbial_phenotype siegele A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells. OMP:DAS absence of transport 2017-10-02T15:29:18Z A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells. OMP:0007669 microbial_phenotype siegele A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells. OMP:DAS altered transport 2017-10-02T15:29:18Z A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control. OMP:0007670 microbial_phenotype siegele A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control. OMP:DAS increased transport 2017-10-02T15:29:18Z An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control. OMP:0007671 microbial_phenotype siegele An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control. OMP:DAS decreased transport 2017-10-02T15:29:18Z An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control. OMP:0007672 microbial_phenotype siegele An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control. OMP:DAS abolished transport 2017-10-02T15:29:18Z A decreased transport phenotype where transport of a substrate(s) is abolished. OMP:0007673 microbial_phenotype siegele A decreased transport phenotype where transport of a substrate(s) is abolished. OMP:DAS molecular function phenotype 2017-10-02T15:42:03Z A microbial phenotype that affects a specific molecular function. OMP:0007674 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A microbial phenotype that affects a specific molecular function. FYPO:0000652 OMP:DAS transporter activity phenotype 2017-10-02T15:43:05Z A molecular function phenotype that affects a transporter activity in a microbe. OMP:0007675 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A molecular function phenotype that affects a transporter activity in a microbe. OMP:DAS presence of transporter activity 2017-10-02T15:43:54Z A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate. OMP:0007676 microbial_phenotype siegele A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate. OMP:DAS absence of transporter activity 2017-10-02T15:43:54Z A transporter activity phenotype where a microbe lacks a specific transporter activity. OMP:0007677 microbial_phenotype siegele A transporter activity phenotype where a microbe lacks a specific transporter activity. OMP:DAS altered transporter activity 2017-10-02T15:43:54Z An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control. OMP:0007678 microbial_phenotype siegele An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control. OMP:DAS decreased transporter activity 2017-10-02T15:44:25Z An altered transporter activity phenotype where the observed rate of a specified transporter activity is decreased relative to a designated control. OMP:0007679 microbial_phenotype siegele increased transporter activity 2017-10-02T15:44:25Z An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control. OMP:0007680 microbial_phenotype siegele An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control. OMP:DAS abolished transporter activity 2017-10-02T15:44:25Z A decreased transporter activity phenotype where a specified transporter activity is abolished. OMP:0007681 microbial_phenotype siegele A decreased transporter activity phenotype where a specified transporter activity is abolished. OMP:DAS terminal phenotype 2017-10-10T10:22:47Z A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable. OMP:0007682 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dsiegele microbial_phenotype A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable. OMP:DAS bending cell morphology 2017-11-14T10:52:24Z OMP:0007683 dsiegele microbial_phenotype cell growth phenotype 2017-11-30T10:36:59Z A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:0007684 dsiegele microbial_phenotype normal cell growth FYPO:0002062 normal cell growth A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. GO:0016049 OMP:das presence of cell growth 2017-11-30T10:42:26Z A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007685 dsiegele microbial_phenotype A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:das absence of cell growth 2017-11-30T10:42:26Z A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007686 dsiegele microbial_phenotype A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:das altered cell growth 2017-11-30T10:42:26Z A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007687 dsiegele microbial_phenotype A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control. OMP:das decreased cell growth 2017-11-30T10:56:24Z An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007688 dsiegele microbial_phenotype An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control. OMP:das increased cell growth 2017-11-30T10:56:24Z An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007689 dsiegele microbial_phenotype An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control. OMP:das abolished cell growth 2017-11-30T10:56:24Z A decreased cell growth phenotype where cell growth is abolished. OMP:0007690 dsiegele microbial_phenotype A decreased cell growth phenotype where cell growth is abolished. OMP:das vegetative cell growth phenotype 2017-12-01T15:44:00Z A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:0007691 microbial_phenotype siegele A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:das presence of vegetative cell growth 2017-12-01T15:47:36Z A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007692 microbial_phenotype siegele A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle. FYPO:0002085 OMP:das absence of vegetative cell growth 2017-12-01T15:47:36Z A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007693 microbial_phenotype siegele A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle. OMP:das altered vegetative cell growth 2017-12-01T15:47:36Z A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control. FYPO:0003154 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007694 microbial_phenotype siegele A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control. FYPO:0003154 OMP:das abnormal vegetative cell growth FYPO:0003154 increased vegetative cell growth 2017-12-01T15:47:36Z An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007695 microbial_phenotype siegele An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control. OMP:das decreased vegetative cell growth 2017-12-01T15:47:37Z An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007696 microbial_phenotype siegele An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:das abolished vegetative cell growth 2017-12-01T15:47:37Z A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished. Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. OMP:0007697 microbial_phenotype siegele A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished. OMP:das cell population phenotype 2017-12-04T20:08:24Z A population phenotype that is observed at the level of a population of microbial cells. OMP:0007698 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell population phenotype microbial_phenotype siegele A population phenotype that is observed at the level of a population of microbial cells. FYPO:0002057 OMP:das FYPO:0002057 cell population phenotype nonviable cell population 2017-12-04T20:14:07Z A cell population phenotype in which none of the cells in the population are viable. FYPO:0002059 OMP:0007699 microbial_phenotype siegele A cell population phenotype in which none of the cells in the population are viable. FYPO:0002059 OMP:das nonviable vegetative cell population 2017-12-04T20:15:43Z A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle. OMP:0007700 inviable vegetative cell population microbial_phenotype siegele FYPO:0002061 inviable vegetative cell population A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle. FYPO:0002061 OMP:das nonviable spore population 2017-12-04T20:19:36Z A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate. FYPO:000064 OMP:0007701 microbial_phenotype siegele A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate. FYPO:0000647 OMP:das inviable spore population FYPO:000064 decreased cell population viability 2017-12-04T20:23:38Z An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control. OMP:0007702 microbial_phenotype siegele An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control. OMP:das increased cell population viability 2017-12-04T20:23:38Z An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control. OMP:0007703 microbial_phenotype siegele An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control. OMP:das abolished cell population viability 2017-12-04T20:23:38Z OMP:0007704 microbial_phenotype siegele cell population viability phenotype 2017-12-04T20:26:35Z A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment. OMP:0007705 cell population viability microbial_phenotype siegele FYPO:0002057 cell population viability A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment. OMP:das viable spore population 2017-12-05T00:44:44Z A cell population phenotype in which cells in a population of spores are viable. FYPO:0003612 OMP:0007706 microbial_phenotype siegele viable spore population FYPO:0003612 A cell population phenotype in which cells in a population of spores are viable. FYPO:0003612 OMP:das increased vegetative cell length 2017-12-19T16:16:41Z An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control. FYPO:0001122 OMP:0007707 microbial_phenotype siegele An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control. OMP:das elongated vegetative cell FYPO:0001122 altered vegetative cell shape 2017-12-19T16:26:51Z An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:0007708 abnormal vegetative cell shape microbial_phenotype siegele FYPO:0002196 abnormal vegetative cell shape An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:das more convex colony 2017-12-19T16:38:38Z An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony. OMP:0007709 cone-shaped n microbial_phenotype siegele An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony. OMP:das conjugation without glucose starvation 2017-12-19T16:56:43Z An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation. OMP:0007710 microbial_phenotype siegele An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation. FYPO:0001864 OMP:das conjugation without nitrogen starvation 2017-12-19T16:59:49Z An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation. OMP:0007711 microbial_phenotype siegele An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation. FYPO:0003031 OMP:das branching of vegetative cell 2017-12-19T17:04:41Z An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control. OMP:0007712 microbial_phenotype siegele An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control. FYPO:0000015 OMP:das altered vegetative cell size 2017-12-19T17:36:21Z An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control. OMP:0007713 microbial_phenotype siegele An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control. OMP:das curving vegetative cell 2017-12-19T17:39:34Z An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line. OMP:0007714 microbial_phenotype siegele An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line. FYPO:0000016 OMP:das altered vegetative cell morphology 2017-12-19T17:49:16Z An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:0007715 abnormal vegetative cell morphology microbial_phenotype siegele FYPO:0001118 abnormal vegetative cell morphology An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. FYPO:0001315 OMP:das viable vegetative cell 2017-12-19T17:54:52Z A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions. OMP:0007716 microbial_phenotype siegele viable vegetative cell A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions. FYPO:0001491 OMP:das FYPO:0001491 viable vegetative cell decreased viability of vegetative microbial cell 2017-12-19T17:56:29Z An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control. Note that if you have done an experiment that assays the viability of a population of microbial cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (OMP:xx) or one of its descendants. OMP:0007717 microbial_phenotype siegele An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control. OMP:das abolished viability of vegetative microbial cell 2017-12-19T17:58:40Z An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished. OMP:0007718 microbial_phenotype siegele An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished. OMP:das decreased cell volume 2017-12-19T18:18:27Z An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control. OMP:0007719 microbial_phenotype siegele An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control. OMP:das decreased vegetative cell volume 2017-12-19T18:19:35Z An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:0007720 microbial_phenotype siegele small vegetative cell FYPO:0000645 small vegetative cell An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:das increased cell volume 2017-12-20T16:40:08Z OMP:0007721 microbial_phenotype siegele increased vegetative cell diameter 2017-12-20T16:41:30Z An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. OMP:0007722 microbial_phenotype siegele An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. OMP:das decreased vegetative cell length 2017-12-20T16:46:25Z An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:0007723 microbial_phenotype siegele An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:das altered vegetative cell viability 2017-12-20T16:59:28Z A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control. OMP:0007724 microbial_phenotype siegele A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control. OMP:das nonviable after spore germination 2017-12-20T16:59:57Z A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified. OMP:0007725 microbial_phenotype siegele A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified. FYPO:0000316 OMP:das abolished spore viability 2017-12-20T17:07:55Z An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate. OMP:0007726 inviable spore microbial_phenotype siegele An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate. FYPO:0002151 OMP:das FYPO:0002151 inviable spore tapering vegetative cell 2017-12-20T17:25:04Z An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control. OMP:0007727 microbial_phenotype siegele An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control. OMP:das altered mitotic cell cycle 2017-12-20T17:40:46Z A cellular process phenotype in which the rate, frequency, or occurrence of progression of a cell through a mitotic cell cycle is altered relative to a designated control. OMP:0007728 abnormal mitotic cell cycle microbial_phenotype siegele FYPO:0000059 abnormal mitotic cell cycle altered vegetative cell population viability 2017-12-20T23:46:00Z An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:0007729 microbial_phenotype siegele An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:das decreased vegetative cell population viability 2017-12-20T23:47:24Z An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control. OMP:0007730 microbial_phenotype siegele An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control. OMP:das abolished vegetative cell population viability 2017-12-20T23:48:30Z An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished. OMP:0007731 inviable vegetative cell population microbial_phenotype siegele An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished. OMP:das FYPO:0002061 inviable vegetative cell population septation index phenotype 2017-12-21T00:00:58Z A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time. OMP:0007732 microbial_phenotype siegele A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time. FYPO:0001903 OMP:das presence of a septation index 2017-12-21T00:03:57Z OMP:0007733 microbial_phenotype siegele altered septation index 2017-12-21T00:04:30Z A septation index phenotype where the septation index is altered relative to a designated control. OMP:0007734 microbial_phenotype siegele A septation index phenotype where the septation index is altered relative to a designated control. OMP:das decreased septation index 2017-12-21T00:05:56Z A septation index of zero indicates cell cycle arrest. An altered septation index phenotype in which the septation index is lower than a designated control. OMP:0007735 decreased septation index microbial_phenotype reduced septation index siegele FYPO:0001128 decreased septation index An altered septation index phenotype in which the septation index is lower than a designated control. OMP:das increased septation index 2017-12-21T00:08:19Z An altered septation index phenotype where the septation index is increased relative to a designated control. OMP:0007736 microbial_phenotype siegele An altered septation index phenotype where the septation index is increased relative to a designated control. FYPO:0000650 OMP:das more irregular colony margin 2017-12-21T13:33:02Z An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical. OMP:0007737 irregular colony morphology microbial_phenotype siegele An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical. FYPO:0001404 OMP:das FYPO:0001404 irregular colony morphology germ tube morphology phenotype 2017-12-21T13:50:25Z A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination. OMP:0007738 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination. BTO:0004822 GO::0032179 OMP:das altered germ tube morphology 2017-12-21T13:52:14Z A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control. OMP:0007739 microbial_phenotype siegele A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control. GO:0032179 OMP:das elongated germ tube morphology 2017-12-21T13:56:59Z An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control. OMP:0007740 microbial_phenotype siegele An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control. OMP:das vegetative cell lysis phenotype 2018-01-01T13:57:14Z A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost. OMP:0007741 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost. FYPO:0000647 OMP:das presence of vegetative cell lysis 2018-01-01T14:02:32Z A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs. OMP:0007742 microbial_phenotype siegele A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs. OMP:das absence of vegetative cell lysis 2018-01-01T14:02:32Z A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur. OMP:0007743 microbial_phenotype siegele A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur. OMP:das altered vegetative cell lysis 2018-01-01T14:02:32Z A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:0007744 microbial_phenotype siegele A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:das vegetative cell phenotype 2018-01-01T14:15:57Z A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle. OMP:0007745 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle. FYPO:0001320 OMP:das altered vegetative cell phenotype 2018-01-01T14:16:46Z A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control. OMP:0007746 abnormal vegetative cell phenotype microbial_phenotype siegele A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control. OMP:das FYPO:FYPO:0003755 abnormal vegetative cell phenotype altered actin cytoskeleton morphology during vegetative growth 2018-01-10T16:46:28Z An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control. OMP:0007747 abnormal actin cytoskeleton morphology during vegetative cell growth microbial_phenotype siegele FYPO:0000350 abnormal actin cytoskeleton morphology during vegetative cell growth An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control. OMP:das cellular physical quality phenotype during vegetative growth 2018-01-10T17:26:54Z A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle. OMP:0007748 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle. FYPO:0001321 OMP:das altered cellular physical quality phenotype during vegetative growth 2018-01-10T17:32:50Z A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control. OMP:0007749 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control. OMP:das subcellular component phenotype 2018-01-10T17:44:33Z A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part. OMP:0007750 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part. OMP:das altered subcellular component phenotype 2018-01-10T17:46:52Z A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control. OMP:0007751 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. abnormal subcellular component microbial_phenotype siegele A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control. OMP:das FYPO:0007751 abnormal subcellular component altered cytoskeleton 2018-01-10T17:50:16Z A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control. OMP:0007752 abnormal cytoskeleton microbial_phenotype siegele A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control. OMP:das FYPO:0002397 abnormal cytoskeleton altered actin cytoskeleton 2018-01-10T17:57:03Z A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:0007753 abnormal actin cytoskeleton microbial_phenotype siegele FYPO:0005665 abnormal actin cytoskeleton A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:das cytoskeleton phenotype 2018-01-10T18:39:44Z A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell. OMP:0007754 microbial_phenotype siegele A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell. OMP:das altered actin cytoskeleton during vegetative growth 2018-01-10T18:48:38Z A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:0007755 abnormal actin cytoskeleton during vegetative growth microbial_phenotype siegele FYPO:0002398 abnormal actin cytoskeleton during vegetative growth A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:das stubby vegetative cell 2018-01-20T00:04:25Z An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control. OMP:0007756 microbial_phenotype siegele An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control. FYPO:0000024 OMP:das more rounded vegetative cell 2018-01-20T00:23:41Z An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells. OMP:0007757 microbial_phenotype more spherical vegetative cell siegele spheroid vegetative cell FYPO:0000021 spheroid vegetative cell An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells. OMP:das actin cytoskeleton phenotype 2018-02-24T23:27:37Z A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell. OMP:0007758 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell. OMP:das microtubule cytoskeleton phenotype 2018-02-24T23:27:37Z A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell. OMP:0007759 microbial_phenotype siegele A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell. OMP:das altered actin cytoskeleton 2018-02-24T23:35:18Z An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:0007760 abnormal actin cytoskeleton microbial_phenotype siegele An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:das FYPO:0005665 abnormal actin cytoskeleton altered microtubule cytoskeleton 2018-02-24T23:37:57Z A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control. OMP:0007761 abnormal microtubule cytoskeleton microbial_phenotype siegele FYPO:0002399 abnormal microtubule cytoskeleton A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control. OMP:das presence of microtubule cytoskeleton 2018-02-24T23:40:45Z A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton. OMP:0007762 microbial_phenotype siegele A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton. OMP:das absence of microtubule cytoskeleton 2018-02-24T23:40:45Z A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton. OMP:0007763 microbial_phenotype siegele A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton. OMP:das altered microtubule cytoskeleton morphology 2018-02-24T23:40:45Z A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control. OMP:0007764 microbial_phenotype siegele A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control. OMP:das altered actin cortical patch localization 2018-02-24T23:59:02Z A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control. OMP:0007765 abnormal actin cortical patch localization microbial_phenotype siegele A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control. OMP:das FYPO:0000190 abnormal actin cortical patch localization subcellular component phenotype during vegetative growth 2018-03-13T00:37:46Z A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle. OMP:0007766 microbial_phenotype siegele A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle. FYPO:0001313 OMP:das altered subcellular component phenotype during vegetative growth 2018-03-13T00:41:59Z A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control. OMP:0007767 abnormal subcellular component during vegetative growth microbial_phenotype siegele FYPO:0001322 abnormal subcellular component during vegetative growth A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control. OMP:das altered septum during vegetative growth 2018-03-13T00:45:10Z A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control. OMP:0007768 abnormal septum during vegetative growth microbial_phenotype siegele FYPO:0002455 abnormal septum during vegetative growth A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control. OMP:das altered septum morphology during vegetative growth 2018-03-13T00:45:27Z A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control. OMP:0007769 abnormal septum morphology during vegetative growth microbial_phenotype siegele A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control. OMP:das FYPO:0002023 abnormal septum morphology during vegetative growth multiseptate vegetative cell 2018-03-13T01:01:28Z An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell. OMP:0007770 microbial_phenotype multiseptate vegetative cell siegele An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell. FYPO:0000118 OMP:das FYPO:0000118 multiseptate vegetative cell presence of population growth at alkaline pH 2018-04-28T15:51:32Z A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). OMP:0007771 microbial_phenotype siegele A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). OMP:das altered vegetative population growth 2018-04-07T23:03:53Z A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control. OMP:0007772 microbial_phenotype siegele A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control. OMP:das presence of population growth on defined medium 2018-04-28T16:17:10Z A population growth phenotype where a microbial population is able to grow on a defined medium. OMP:0007773 microbial_phenotype siegele A population growth phenotype where a microbial population is able to grow on a defined medium. OMP:DAS population growth on defined medium phenotype 2018-04-28T16:19:32Z A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium. OMP:0007774 microbial_phenotype siegele A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium. OMP:das altered population growth on defined medium 2018-04-28T16:20:12Z A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control. OMP:0007775 microbial_phenotype siegele A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control. OMP:das decreased population growth on defined medium 2018-04-28T16:22:29Z An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control. OMP:0007776 microbial_phenotype siegele An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control. OMP:das abolished population growth on defined medium 2018-04-28T16:23:22Z An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished. OMP:0007777 microbial_phenotype siegele An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished. OMP:das increased population growth on defined medium 2018-04-28T16:23:56Z A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control. OMP:0007778 microbial_phenotype siegele A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control. OMP:das absence of population growth on defined medium 2018-04-28T16:25:49Z A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium. OMP:0007779 microbial_phenotype siegele A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium. OMP:das absence of microbial vegetative cell viability 2018-06-08T17:22:34Z A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions. OMP:0007780 microbial_phenotype siegele A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions. FYPO:0001489 OMP:das septation following abnormal chromosome segregation during vegetative growth 2018-06-08T17:31:26Z A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells. OMP:0007781 microbial_phenotype septation following abnormal mitotic chromosome segregation siegele FYPO:0000323 septation following abnormal mitotic chromosome segregation A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells. FYPO:0000323 OMP:das cut cell 2018-06-08T17:41:11Z A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells. OMP:0007782 cut microbial_phenotype siegele A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells. FYPO:0003165 OMP:das FYPO:0003165 cut cellular process phenotype during vegetative growth 2018-06-09T19:27:13Z A phenotype that affects a cellular process in the vegetative phase of the life cycle. OMP:0007783 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cellular process phenotype during vegetative growth microbial_phenotype siegele FYPO:0001331 cellular process phenotype during vegetative growth A phenotype that affects a cellular process in the vegetative phase of the life cycle. FYPO:0001331 OMP:das altered cellular process during vegetative growth 2018-06-09T19:29:28Z A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control. OMP:0007784 abnormal cellular process during vegetative growth microbial_phenotype siegele A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control. OMP:das FYPO:0001362 abnormal cellular process during vegetative growth presence of cellular process during vegetative growth 2018-06-09T19:29:58Z OMP:0007785 microbial_phenotype siegele absence of cellular process during vegetative growth 2018-06-09T19:30:25Z A microbial phenotype where a microbe does not carry out the specified cellular process. OMP:0007786 microbial_phenotype siegele A microbial phenotype where a microbe does not carry out the specified cellular process. OMP:das presence of cell separation after cell division during vegetative growth 2018-06-09T19:32:40Z OMP:0007787 microbial_phenotype siegele altered cell separation after cell division during vegetative growth 2018-06-09T19:33:12Z A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control. OMP:0007788 abnormal cell separation after cytokinesis microbial_phenotype siegele A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control. OMP:das FYPO:0000164 abnormal cell separation after cytokinesis abolished cell separation after cell division during vegetative growth 2018-06-09T19:52:36Z A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished. OMP:0007789 abolished cell separation after cytokinesis microbial_phenotype siegele A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished. FYPO:0006557 OMP:das FYPO:0006557 abolished cell separation after cytokinesis decreased frequency of cell separation after cell division during vegetative growth 2018-06-09T20:00:05Z A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells. OMP:0007790 microbial_phenotype siegele A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells. OMP:das dispersed actin cortical patch localization 2018-06-10T01:59:18Z A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends. OMP:0007791 dispersed actin cortical patch localization microbial_phenotype siegele A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends. FYPO:0002021 OMP:das FYPO:0002021 dispersed actin cortical patch localization absence of cell separation after cell division during vegetative growth 2018-06-10T02:08:44Z A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division. OMP:0007792 microbial_phenotype siegele A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division. OMP:das presence of vegetative cell population growth 2018-06-10T21:18:22Z A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number. OMP:0007793 microbial_phenotype siegele A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number. OMP:das cell population growth phenotype 2018-06-10T23:16:48Z A cell population phenotype that affects the rate or extent of growth of a population of microbial cells. OMP:0007794 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell population growth phenotype microbial_phenotype siegele FYPO:0000139 cell population growth phenotype A cell population phenotype that affects the rate or extent of growth of a population of microbial cells. FYPO:0000139 OMP:das vegetative cell population growth phenotype 2018-06-11T00:02:40Z A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle. OMP:0007795 microbial_phenotype siegele vegetative cell population growth phenotype A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle. FYPO:0000139 OMP:das FYPO:0000139 vegetative cell population growth phenotype presence of vegetative cell population growth 2018-06-12T00:51:39Z OMP:0007796 microbial_phenotype siegele absence of vegetative cell population growth 2018-06-12T00:51:39Z OMP:0007797 microbial_phenotype siegele altered vegetative cell population growth 2018-06-12T00:51:39Z OMP:0007798 microbial_phenotype siegele decreased vegetative cell population growth at high temperature 2018-06-12T00:51:53Z A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control. OMP:0007799 decreased vegetative cell population growth at high temperature microbial_phenotype siegele FYPO:0000082 decreased vegetative cell population growth at high temperature A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control. FYPO:0000082 OMP:das polyether antimicrobial resistance phenotype 2018-06-18T03:07:12Z OMP:0000274 OMP:0007800 This term and its children were deemed to be too granular. Instead, use one of the children of OMP:0000274 antimicrobial agent resistance phenotype and enter database identifier for A22 in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent microbial_phenotype siegele true altered vegetative cell population growth rate 2018-06-19T15:14:26Z OMP:0007801 dsiegele microbial_phenotype increased vegetative cell population growth rate 2018-06-19T15:15:58Z OMP:0007802 dsiegele microbial_phenotype decreased vegetative cell population growth rate 2018-06-19T15:15:58Z OMP:0007803 dsiegele microbial_phenotype increased vegetative cell population viability 2018-06-19T15:45:43Z An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control. OMP:0007804 dsiegele microbial_phenotype An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control. OMP:das increased cell population viability upon starvation 2018-06-19T15:46:20Z An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control. OMP:0007805 dsiegele microbial_phenotype An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control. OMP:das increased cell population viability upon nitrogen starvation 2018-06-19T15:48:36Z An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control. OMP:0007806 dsiegele increased viability upon nitrogen starvation microbial_phenotype FYPO:0004344 increased viability upon nitrogen starvation An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control. FYPO:0004344 OMP:das decreased cell population viablity upon starvation 2018-06-19T15:53:27Z OMP:0007807 dsiegele microbial_phenotype decreased cell population viability upon nitrogen starvation 2018-06-19T15:53:53Z An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control. OMP:0007808 dsiegele loss of viability upon nitrogen starvation microbial_phenotype An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control. OMP:das FYPO:1178 loss of viability upon nitrogen starvation altered cell population growth 2018-06-19T16:14:57Z A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control. OMP:0007809 dsiegele microbial_phenotype A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control. OMP:das cell population growth rate phenotype 2018-06-19T16:39:59Z OMP:0007810 dsiegele microbial_phenotype cellular pigment accumulation phenotype 2018-06-20T14:50:41Z A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell. OMP:0007811 cellular pigment accumulation phenotype dsiegele microbial_phenotype FYPO:0000739 cellular pigment accumulation phenotype A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell. OMP:das presence of cellular pigment accumulation 2018-06-20T14:55:08Z A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism. OMP:0007812 dsiegele microbial_phenotype normal cellular pigment accumulation FYPO:0000740 normal cellular pigment accumulation A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism. OMP:das presence of cellular pigment accumulation during vegetative growth 2018-06-20T14:58:28Z A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment. OMP:0007813 dsiegele microbial_phenotype normal cellular pigment accumulation A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment. OMP:das FYPO:0000740 normal cellular pigment accumulation altered cellular pigment accumulation 2018-06-20T15:08:52Z A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control. OMP:0007814 dsiegele microbial_phenotype A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control. OMP:das increased cellular pigment accumulation 2018-06-20T15:11:51Z An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. OMP:0007815 dsiegele microbial_phenotype An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. OMP:das increased cellular pigment accumulation 2018-06-20T15:15:14Z An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. OMP:0007816 dsiegele increased cellular pigment accumulation microbial_phenotype An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. OMP:das FYPO:0000741 increased cellular pigment accumulation decreased cellular pigment accumulation 2018-06-20T15:20:02Z An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. OMP:0007817 dsiegele microbial_phenotype An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. OMP:das decreased cellular pigment accumulation during vegetative growth 2018-06-20T15:20:42Z An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. OMP:0007818 dsiegele microbial_phenotype An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. OMP:das absence of cellular pigment accumulation 2018-06-20T15:29:44Z A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism. OMP:0007819 dsiegele microbial_phenotype A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism. OMP:das absence of cellular pigment accumulation during vegetative growth 2018-06-20T15:31:24Z A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism. OMP:0007820 dsiegele microbial_phenotype A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism. OMP:das nitrofuran resistance phenotype 2018-06-21T22:05:44Z An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group. OMP:0007821 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. difurazone (Nitrovin) resistance phenotype microbial_phenotype nitrofuran sensitivity phenotype nitrofurantoin resistance phenotype nitrofurazone resistance phenotype siegele CHEBI:71415 nitrofurantoin resistance phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group. CHEBI:87230 OMP:das CHEBI:44368 nitrofurazone resistance phenotype resistant to nitrofuran 2018-06-21T22:07:43Z A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds. OMP:0007822 microbial_phenotype siegele A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds. OMP:das not resistant to nitrofuran 2018-06-21T22:07:43Z A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds. OMP:0007823 microbial_phenotype siegele A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds. OMP:das altered nitrofuran resistance 2018-06-21T22:07:43Z A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control. OMP:0007824 microbial_phenotype siegele A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control. OMP:das decreased resistance to nitrofuran 2018-06-21T22:14:44Z An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control. OMP:0007825 increased sensitivity to nitrofuran microbial_phenotype siegele An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control. OMP:das abolished resistance to nitrofuran 2018-06-21T22:15:06Z An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished. OMP:0007826 microbial_phenotype siegele An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished. OMP:das increased resistance to nitrofuran 2018-06-21T22:15:28Z An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control. OMP:0007827 decreased sensitivity to nitrofuran microbial_phenotype siegele An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control. OMP:das sulfonamide antimicrobial agent resistance phenotype 2018-06-22T00:39:30Z An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group. OMP:0007828 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele sulfamethizole resistance phenotype sulfamonomethoxine resistance phenotype sulfonamide sensitivity phenotype An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group. CHEBI:35358 OMP:das CHEBI:9331 sulfamethizole resistance phenotype CHEBI:32164 sulfamonomethoxine resistance phenotype resistant to sulfonamide antimicrobial agent 2018-06-22T00:47:21Z A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent. OMP:0007829 microbial_phenotype siegele A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent. OMP:das not resistant to a sulfonamide antimicrobial agent 2018-06-22T00:47:21Z A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent. OMP:0007830 microbial_phenotype siegele A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent. OMP:das altered resistance to a sulfonamide antimicrobial agent 2018-06-22T00:47:21Z A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control. OMP:0007831 microbial_phenotype siegele A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control. OMP:das increased resistance to sulfonamide 2018-06-22T00:47:21Z An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control. OMP:0007832 decreased sensitivity to sulfonamide antimicrobial agent microbial_phenotype siegele An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control. OMP:das decreased resistance to sulfonamde 2018-06-22T00:47:21Z An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control. OMP:0007833 increased sensitivity to sulfonamide microbial_phenotype siegele An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control. OMP:das abolished resistance to sulfonamide 2018-06-22T00:47:21Z A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished. OMP:0007834 microbial_phenotype siegele A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished. OMP:das spore viability phenotype 2018-06-25T10:35:25Z A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions. OMP:0007835 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial_phenotype siegele A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions. OMP:das viable spore 2018-06-25T10:37:49Z A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions. OMP:0007836 microbial_phenotype siegele A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions. OMP:das nonviable spore 2018-06-25T10:39:27Z A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate. OMP:0007837 microbial_phenotype siegele A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate. FYPO:0002151 OMP:das altered spore viability 2018-06-25T16:17:02Z A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control. OMP:0007838 microbial_phenotype siegele A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control. OMP:das decreased spore viability 2018-06-25T16:18:49Z An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control. OMP:0007839 microbial_phenotype siegele An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control. OMP:das increased spore viability 2018-06-25T16:18:49Z An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control. OMP:0007840 microbial_phenotype siegele An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control. OMP:das increased viability of vegetative microbial cell 2018-06-25T17:18:58Z An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control. OMP:0007841 microbial_phenotype siegele An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control. OMP:das presence of germ tube 2018-06-27T00:14:46Z A cell morphology phenotype where a germinating microbial spore has a germ tube. OMP:0007842 microbial_phenotype siegele A cell morphology phenotype where a germinating microbial spore has a germ tube. OMP:das absence of germ tube 2018-06-27T00:14:46Z A cell morphology phenotype where a germinating microbial spore lacks a germ tube. OMP:0007843 microbial_phenotype siegele A cell morphology phenotype where a germinating microbial spore lacks a germ tube. OMP:das curved germ tube morphology 2018-06-27T00:27:16Z An altered germ tube morphology phenotype where the germ tube is curved along its long axis. OMP:0007844 microbial_phenotype siegele An altered germ tube morphology phenotype where the germ tube is curved along its long axis. OMP:das unseptated germ tube 2018-06-27T20:58:20Z An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell. OMP:0007845 microbial_phenotype siegele An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell. FYPO:0000311 OMP:das organic cyclic antimicrobial agent resistance phenotype 2018-06-30T21:27:43Z An antimicrobial agent resistance phenotype OMP:0007846 microbial_phenotype siegele An antimicrobial agent resistance phenotype CHEBI:33832 OMP:das fosfomycin resistance phenotype 2018-07-24T19:34:05Z An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin. OMP:0007847 fosfomycin resistance phenotype fosfomycin sensitivity phenotype microbial_phenotype siegele An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin. CHEBI:26069 OMP:das CHEBI:28915 fosfomycin resistance phenotype phenolic chemical resistance phenotype 2018-07-26T17:28:29Z A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. OMP:0007848 epigallocatechin gallate (EGCG) chemical resistance phenotype microbial_phenotype phenol red chemical resistance phenotype rose bengal chemical resistance phenotype siegele A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. CHEBI:33853 OMP:das CHEBI::4806 epigallocatechin gallate (EGCG) chemical resistance phenotype CHEBI:31991 phenol red chemical resistance phenotype CHEBI:52261 rose bengal chemical resistance phenotype absence of organic carbon source utilization 2018-07-27T16:15:15Z OMP:0007849 dsiegele microbial_phenotype absence of inorganic carbon source utilization 2018-07-27T16:15:15Z OMP:0007850 dsiegele microbial_phenotype mixotrophic energy metabolism 2018-07-27T16:29:26Z A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth. OMP:0007851 dsiegele microbial_phenotype mixotrophy A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth. OMP:das increased inorganic carbon source utilization 2018-07-27T16:33:19Z An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control. OMP:0007852 dsiegele microbial_phenotype An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control. OMP:das decreased inorganic carbon source utilization 2018-07-27T16:33:19Z An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control. OMP:0007853 dsiegele microbial_phenotype An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control. OMP:das abolished inorganic carbon source utilization 2018-07-27T16:33:19Z A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished. OMP:0007854 dsiegele microbial_phenotype A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished. OMP:das fosmidomycin antimicrobial agent resistance phenotype 2018-07-27T17:59:33Z An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin. OMP:0007855 dsiegele microbial_phenotype An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin. CHEBI:443725 OMP:das presence of fosfomycin resistance 2018-07-27T18:05:19Z An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin. OMP:0007856 dsiegele microbial_phenotype An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin. OMP:das absence of fosfomycin resistance 2018-07-27T18:05:19Z An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin. OMP:0007857 dsiegele microbial_phenotype An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin. OMP:das altered fosfomycin resistance 2018-07-27T18:05:19Z A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control. OMP:0007858 dsiegele microbial_phenotype A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control. OMP:das increased resistance to fosfomycin 2018-07-27T18:05:19Z An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control. OMP:0007859 dsiegele microbial_phenotype An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control. OMP:das decreased resistance to fosfomycin 2018-07-27T18:05:19Z An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control. OMP:0007860 dsiegele microbial_phenotype An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control. OMP:das abolished fosfomycin resistance 2018-07-27T18:05:19Z A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished. OMP:0007861 dsiegele microbial_phenotype A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished. OMP:das bicyclomycin antimicrobial agent resistance phenotype 2018-07-29T21:34:15Z OMP:0000274 OMP:0007862 The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent microbial_phenotype siegele true presence of resistance to bicyclomycin 2018-07-29T21:34:15Z OMP:0007863 OMP:0007876 microbial_phenotype siegele true absence of resistance to bicyclomycin 2018-07-29T21:34:15Z OMP:0007864 OMP:0007877 microbial_phenotype siegele true altered resistance to bicyclomycin 2018-07-29T21:34:15Z OMP:0007134 OMP:0007865 microbial_phenotype siegele true decreased resistance to bicyclomycin 2018-07-29T21:34:15Z OMP:0007866 OMP:0007879 microbial_phenotype siegele true abolished resistance to bicyclomycin 2018-07-29T21:34:15Z OMP:0007867 OMP:0007880 The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. microbial_phenotype siegele true increased resistance to bicyclomycin 2018-07-29T21:34:15Z OMP:0007868 OMP:0007878 microbial_phenotype siegele true A22 antimicrobial agent resistance phenotype 2018-07-29T22:21:01Z OMP:0000274 OMP:0007869 The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent amino[sulfanyl]methaniminiumchloride antimicrobial agent resistance phenotype microbial_phenotype siegele true presence of resistance to A22 2018-07-29T22:22:16Z OMP:0007870 OMP:0007876 This term and was deemed to be too granular. In its place, use OMP:0007876 resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. microbial_phenotype siegele true absence of resistance to A22 2018-07-29T22:22:16Z OMP:0007871 OMP:0007877 This term was deemed to be too granular. In its place, use OMP:0007877 not resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. microbial_phenotype siegele true increased resistance to A22 2018-07-29T22:22:16Z OMP:0007872 OMP:0007878 This term and was deemed to be too granular. Instead, use OMP:0007878 increased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. microbial_phenotype siegele true decreased resistance to A22 2018-07-29T22:22:16Z OMP:0007873 OMP:0007879 This term and was deemed to be too granular. In its place, use OMP:000 7879 decreased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. microbial_phenotype siegele true abolished resistance to A22 2018-07-29T22:22:16Z OMP:0007874 OMP:0007880 The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. microbial_phenotype siegele true altered resistance to A22 2018-07-29T22:22:16Z OMP:0007134 OMP:0007875 This term and was deemed to be too granular. In its place, use OMP:0007134 altered resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. microbial_phenotype siegele true resistant to an antimicrobial agent 2018-08-17T17:22:51Z An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field. OMP:0007876 dsiegele microbial_phenotype not sensitive to an antimicrobial agent An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field. OMP:das not resistant to an antimicrobial agent 2018-08-17T17:25:08Z An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field. OMP:0007877 dsiegele microbial_phenotype sensitive to an antimicrobial agent An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field. OMP:das increased resistance to an antimicrobial agent 2018-08-17T17:26:30Z An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control. OMP:0007878 dsiegele microbial_phenotype An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control. OMP:das decreased resistance to an antimicrobial agent 2018-08-17T17:26:30Z An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control. OMP:0007879 dsiegele microbial_phenotype An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control. OMP:das abolished resistance to an antimicrobial agent 2018-08-17T17:26:45Z A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished. OMP:0007880 dsiegele microbial_phenotype A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished. OMP:das host defense peptides resistance phenotype 2018-08-17T18:21:52Z An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host. OMP:0007881 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cecropin resistance phenotype defensin resistance phenotype dsiegele host defense peptides sensitivity phenotype microbial_phenotype An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host. OMP:das abolished resistance to host defense peptides 2018-08-17T18:31:14Z A decreased resistance to host defense peptide phenotype where resistance is abolished. OMP:0007882 dsiegele microbial_phenotype A decreased resistance to host defense peptide phenotype where resistance is abolished. OMP:das abolished chemical resistance 2018-08-17T19:14:42Z A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished. OMP:0007883 dsiegele microbial_phenotype A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished. OMP:das resistant to a metal 2018-08-22T15:48:22Z A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal. OMP:0007884 dsiegele microbial_phenotype A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal. OMP:das not resistant to a metal 2018-08-22T15:53:56Z A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal. OMP:0007885 dsiegele microbial_phenotype sensitive to a metal A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal. OMP:das decreased resistance to a metal 2018-08-22T15:54:29Z A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control. OMP:0007886 dsiegele increased sensitivity to a metal microbial_phenotype A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control. OMP:das abolished resistance to a metal 2018-08-22T15:54:56Z A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished. OMP:0007887 dsiegele microbial_phenotype A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished. OMP:das increased resistance to a metal 2018-08-22T15:55:19Z A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control. OMP:0007888 decreased sensitivity to a metal dsiegele microbial_phenotype A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control. OMP:das altered resistance to a metal 2018-08-22T15:56:07Z A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control. OMP:0007889 altered sensitivity to a metal dsiegele microbial_phenotype A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control. OMP:das metal resistance phenotype 2018-08-22T18:04:54Z A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal. OMP:0007890 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. metal sensitivity phenotype microbial_phenotype siegele A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal. CHEBI:33521 OMP:das surfactant resistance phenotype 2018-08-22T18:12:18Z A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces. OMP:0007891 benzalkonium chloride resistance phenotype detergent resistance phenotype microbial_phenotype siegele CHEBI:3020 benzalkonium chloride resistance phenotype A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces. CHEBI:35195 OMP:das resistant to a surfactant 2018-08-22T18:13:28Z A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant. OMP:0007892 microbial_phenotype not sensitive to a surfactant siegele A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant. OMP:das not resistant to a surfactant 2018-08-22T18:13:28Z A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant. OMP:0007893 microbial_phenotype sensitive to a surfactant siegele A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant. OMP:das altered resistance to a surfactant 2018-08-22T18:13:28Z A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control. OMP:0007894 microbial_phenotype siegele A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control. OMP:das increased resistance to a surfactant 2018-08-22T18:13:58Z An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control. OMP:0007895 decreased sensitivity to a surfactant microbial_phenotype siegele An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control. OMP:das decreased resistance to a surfactant 2018-08-22T18:13:58Z An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control. OMP:0007896 increased sensitivity to a surfactant microbial_phenotype siegele An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control. OMP:das abolished resistance to a surfactant 2018-08-22T18:13:58Z A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished. OMP:0007897 microbial_phenotype siegele A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished. OMP:das bile acids resistance phenotype 2018-08-23T15:36:18Z A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids. OMP:0007898 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bile acid sensitivity phenotype bile salt resistance phenotype microbial_phenotype siegele A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids. CHEBI:138366 OMP:das resistant to bile acids 2018-08-23T16:11:39Z A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids. OMP:0007899 microbial_phenotype siegele A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids. OMP:das not resistant to bile acids 2018-08-23T16:11:39Z A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids. OMP:0007900 microbial_phenotype sensitive to bile acids siegele A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids. OMP:das altered resistance to bile acids 2018-08-23T16:11:39Z A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control. OMP:0007901 altered sensitivity to bile acids microbial_phenotype siegele A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control. OMP:das increased resistance to bile acids 2018-08-23T16:11:39Z An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control. OMP:0007902 decreased sensitivity to bile acids microbial_phenotype siegele An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control. OMP:das decreased resistance to bile acids 2018-08-23T16:11:39Z An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control. OMP:0007903 increased sensitivity to bile acids microbial_phenotype siegele An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control. OMP:das abolished resistance to bile acids 2018-08-23T16:11:39Z A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished. OMP:0007904 microbial_phenotype siegele A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished. OMP:das altered nitrogen source utilization 2018-08-24T12:33:54Z OMP:0007905 microbial_phenotype siegele altered organic nitrogen source utilization 2018-08-24T12:37:35Z OMP:0007906 microbial_phenotype siegele presence of biofilm formation 2018-08-26T19:22:17Z A biofilm formation phenotype where a microbe is capable of forming a biofilm. OMP:0007907 microbial_phenotype siegele A biofilm formation phenotype where a microbe is capable of forming a biofilm. OMP:das chelator resistance phenotype 2018-08-24T16:59:36Z OMP:0007908 microbial_phenotype siegele resistant to a chelator 2018-08-24T17:00:53Z OMP:0007909 microbial_phenotype siegele not resistant to a chelator 2018-08-24T17:00:53Z OMP:0007910 microbial_phenotype siegele altered resistance to a chelator 2018-08-24T17:00:53Z OMP:0007911 microbial_phenotype siegele decreased resistance to a chelator 2018-08-24T17:00:53Z OMP:0007912 microbial_phenotype siegele increased resistance to a chelator 2018-08-24T17:00:53Z OMP:0007913 microbial_phenotype siegele abolished resistance to a chelator 2018-08-24T17:01:28Z OMP:0007914 microbial_phenotype siegele absence of biofilm formation 2018-08-26T19:22:17Z A biofilm formation phenotype where a microbe is incapable of forming a biofilm. OMP:0007915 microbial_phenotype siegele A biofilm formation phenotype where a microbe is incapable of forming a biofilm. OMP:das decreased vegetative cell diameter 2018-09-05T14:59:12Z An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. OMP:0007916 microbial_phenotype siegele An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. OMP:das cell size variability 2018-09-05T15:18:58Z A cell population phenotype that describes the extent of cell size variability within a growing microbial cell population. OMP:0007917 microbial_phenotype siegele altered cell size variability within a cell population 2018-09-05T15:21:39Z OMP:0007918 microbial_phenotype siegele presence of cell population growth 2018-09-05T15:58:51Z OMP:0007919 microbial_phenotype siegele absence of cell population growth 2018-09-05T15:59:26Z OMP:0007920 microbial_phenotype siegele presence of cell size variability within a cell population 2018-09-05T16:06:50Z OMP:0007921 microbial_phenotype siegele absence of cell size variability within a cell population 2018-09-05T16:07:15Z OMP:0007922 microbial_phenotype siegele decreased cell size variability within a cell population 2018-09-05T16:08:39Z OMP:0007923 microbial_phenotype siegele increased cell size variability within a cell population 2018-09-05T16:08:39Z OMP:0007924 microbial_phenotype siegele abolished cell size variability within a cell population 2018-09-05T16:08:39Z OMP:0007925 microbial_phenotype siegele increased anaerobic population growth 2018-09-05T16:39:27Z Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control. OMP:0007926 microbial_phenotype siegele An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control. OMP:das decreased anaerobic population growth 2018-09-05T16:39:27Z Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control. OMP:0007927 microbial_phenotype siegele An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control. OMP:das commonly used descriptors 2018-09-06T17:18:16Z Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group. OMP:0007928 microbial_phenotype siegele Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group. OMP:das decreased microaerophilic population growth 2018-09-07T18:13:30Z A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. OMP:0007929 microbial_phenotype siegele A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. OMP:das increased microaerophilic population growth 2018-09-07T18:14:29Z Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control. OMP:0007930 microbial_phenotype siegele An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control. OMP:das altered population phenotype 2018-09-15T01:45:33Z A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control. OMP:0007931 microbial_phenotype siegele A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control. OMP:das resistance to nutrient limitation stress phenotype 2018-11-04T16:55:30Z A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient. OMP:0007932 microbial_phenotype siegele A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient. OMP:das presence of resistance to nutrient limitation 2018-11-04T16:56:28Z A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient. OMP:0007933 microbial_phenotype siegele A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient. OMP:das absence of resistance to nutrient limitation 2018-11-04T16:56:28Z A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient. OMP:0007934 microbial_phenotype siegele A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient. OMP:das altered resistance to nutrient limitation 2018-11-04T16:56:28Z A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control. OMP:0007935 microbial_phenotype siegele A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control. OMP:das increased resistance to nutrient limitation 2018-11-04T16:56:35Z OMP:0007936 microbial_phenotype siegele decreased resistance to nutrient limitation 2018-11-04T16:56:58Z OMP:0007937 microbial_phenotype siegele abolished resistance to nutrient limitation 2018-11-04T16:57:25Z OMP:0007938 microbial_phenotype siegele increased ploidy in a vegetative microbial cell 2019-02-01T15:05:44Z A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control. OMP:0007939 microbial_phenotype siegele A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control. OMP:das increased spontaneous diploidization in a vegetative microbial cell 2019-02-01T15:11:39Z An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control. OMP:0007940 increased spontaneous diploidization microbial_phenotype siegele An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control. FYPO:0000252 OMP:DAS FYPO:0000252 increased spontaneous diploidization altered viability after microbial spore germination 2019-02-01T17:20:01Z OMP:0007941 microbial_phenotype siegele increased survival in macrophage 2019-03-27T14:44:53Z OMP:0007942 dsiegele microbial_phenotype decreased survival in macrophage 2019-03-27T14:45:12Z OMP:0007943 dsiegele microbial_phenotype abolished survival in macrophage 2019-03-27T14:45:29Z OMP:0007944 dsiegele microbial_phenotype presence of population growth at acidic pH 2019-09-12T00:41:29Z A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7). OMP:0007945 microbial_phenotype siegele A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7). OMP:das absence of population growth at acidic pH 2019-09-12T00:42:29Z A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7). OMP:0007946 microbial_phenotype siegele A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7). OMP:das presence of growth at alkaline pH 2019-09-12T10:31:33Z A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). OMP:0007947 This term was made obsolete because it was redundant with OMP:0007771. The two terms weren't merged because the redundancy of OMP:0007947 was discovered after one day and was never committed to a release. microbial_phenotype siegele true A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). OMP:das absence of growth at alkaline pH 2019-09-12T10:44:32Z A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7). OMP:0007948 microbial_phenotype siegele true A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7). OMP:das <new term> 2019-09-13T00:12:25Z OMP:0007949 microbial_phenotype siegele presence of population growth at high temperature 2019-09-13T01:17:11Z A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. OMP:0007950 microbial_phenotype siegele A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. OMP:das absence of population growth at high temperature 2019-09-13T01:22:12Z A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. OMP:0007951 microbial_phenotype siegele A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. OMP:das altered population growth at high temperature 2019-09-13T01:24:01Z A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control. OMP:0007952 microbial_phenotype siegele A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control. OMP:das increased population growth at high temperature 2019-09-13T01:25:33Z OMP:0007953 microbial_phenotype siegele decreased population growth at high temperature 2019-09-13T01:25:52Z OMP:0007954 microbial_phenotype siegele abolished population growth at high temperature 2019-09-13T01:26:12Z OMP:0007955 microbial_phenotype siegele presence of population growth at low temperature 2019-09-13T01:41:59Z OMP:0007956 microbial_phenotype siegele absence of population growth at low temperature 2019-09-13T01:41:59Z OMP:0007957 microbial_phenotype siegele altered population growth at low temperature 2019-09-13T01:41:59Z OMP:0007958 microbial_phenotype siegele increased population growth at low temperature 2019-09-13T01:41:59Z OMP:0007959 microbial_phenotype siegele decreased population growth at low temperature 2019-09-13T01:41:59Z OMP:0007960 microbial_phenotype siegele abolished population growth at low temperature 2019-09-13T01:41:59Z OMP:0007961 microbial_phenotype siegele presence of cell population growth during nutrient limitation 2019-09-23T14:17:16Z A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). OMP:0007962 microbial_phenotype normal cell population growth during glucose starvation normal cell population growth during iron starvation siegele FYPO:0004765 normal cell population growth during glucose starvation FYPO:0001814 normal cell population growth during iron starvation A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). OMP:das absence of cell population growth during nutrient limitation 2019-09-23T14:22:18Z A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration). OMP:0007963 microbial_phenotype siegele A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration). OMP:das cell population growth during nutrient limitation phenotype 2019-09-23T14:25:30Z A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). OMP:0007964 microbial_phenotype siegele A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). OMP:das altered cell population growth during nutrient limitation 2019-09-23T14:31:13Z A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control. OMP:0007965 microbial_phenotype siegele A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control. OMP:das increased population growth during nutrient limitation 2019-09-23T14:32:07Z An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control. OMP:0007966 increased cell population growth during glucose starvation increased vegetative cell population growth during phosphate starvation microbial_phenotype siegele FYPO:0003938 increased cell population growth during glucose starvation An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control. OMP:das FYPO:0004967 increased vegetative cell population growth during phosphate starvation decreased cell population growth during nutrient limitation 2019-09-23T14:33:15Z An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control. OMP:0007967 decreased cell population growth during glucose starvation decreased cell population growth during nitrogen starvation decreased vegetative cell population growth during phosphate starvation microbial_phenotype siegele FYPO:0004968 decreased vegetative cell population growth during phosphate starvation FYPO:0003743 decreased cell population growth during glucose starvation An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control. OMP:das FYPO:0000709 decreased cell population growth during nitrogen starvation abolished population growth during nutrient limitation 2019-09-23T14:34:07Z A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished. OMP:0007968 abolished cell population growth during glucose starvation microbial_phenotype siegele A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished. OMP:das FYPO:0004837 abolished cell population growth during glucose starvation presence of organic nitrogen source utilization 2019-11-17T15:43:44Z OMP:0007969 microbial_phenotype siegele absence of organic nitrogen source utilization 2019-11-17T15:43:44Z OMP:0007970 microbial_phenotype siegele tolerance to an antimicrobial agent phenotype 2020-05-08T13:13:10Z An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK). OMP:0007971 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Tolerance applies only to microbiocidal antimicrobial agents and not to microbiostatic agents. This is in contrast to resistance which applies to both microbiocidal and microbiostatic agents. microbial_phenotype siegele An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK). DOI:10.1038/nrmicro.2016.34 OMP:das PMID:27080241 altered tolerance to an antimicrobial agent phenotype 2020-05-08T13:17:08Z An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control. OMP:0007972 microbial_phenotype siegele An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control. OMP:das increased tolerance to an antimicrobial agent 2020-05-08T13:17:08Z An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control. OMP:0007973 microbial_phenotype siegele An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control. OMP:das decreased tolerance to an antimicrobial agent 2020-05-08T13:17:08Z An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control. OMP:0007974 microbial_phenotype siegele An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control. OMP:das altered cell length 2020-07-22T19:20:08Z OMP:0007975 microbial_phenotype siegele altered cell length variability 2020-07-22T19:21:08Z OMP:0007976 microbial_phenotype siegele altered cell diameter 2020-07-22T19:22:09Z OMP:0007977 microbial_phenotype siegele altered cell diameter variability 2020-07-22T19:22:31Z OMP:0007978 microbial_phenotype siegele increased cell length variability 2020-07-22T19:24:06Z OMP:0007979 microbial_phenotype siegele decreased cell length variability 2020-07-22T19:24:06Z OMP:0007980 microbial_phenotype siegele decreased cell diameter variability 2020-07-22T19:36:15Z OMP:0007981 microbial_phenotype siegele increased cell diameter variability 2020-07-22T19:36:15Z OMP:0007982 microbial_phenotype siegele altered cell area 2020-07-22T20:21:33Z OMP:0007983 microbial_phenotype siegele altered cell area variability 2020-07-22T20:22:13Z OMP:0007984 microbial_phenotype siegele decreased cell area 2020-07-22T20:23:00Z OMP:0007985 microbial_phenotype siegele increased cell area 2020-07-22T20:23:00Z OMP:0007986 microbial_phenotype siegele decreased cell area variability 2020-07-22T20:23:10Z OMP:0007987 microbial_phenotype siegele increased cell area variability 2020-07-22T20:23:34Z OMP:0007988 microbial_phenotype siegele altered cell volume 2020-07-22T20:25:24Z OMP:0007989 microbial_phenotype siegele altered cell volume variability 2020-07-22T20:26:40Z OMP:0007990 microbial_phenotype siegele decreased cell volume variability 2020-07-22T20:27:50Z OMP:0007991 microbial_phenotype siegele increased cell volume variability 2020-07-22T20:27:50Z OMP:0007992 microbial_phenotype siegele altered cell surface area 2020-07-22T20:28:53Z OMP:0007993 microbial_phenotype siegele decreased cell surface area 2020-07-22T20:29:49Z OMP:0007994 microbial_phenotype siegele increased cell surface area 2020-07-22T20:29:49Z OMP:0007995 microbial_phenotype siegele altered cell surface area variability 2020-07-22T20:29:49Z OMP:0007996 microbial_phenotype siegele decreased cell surface area variability 2020-07-22T20:31:33Z OMP:0007997 microbial_phenotype siegele increased cell surface area variability 2020-07-22T20:31:33Z OMP:0007998 microbial_phenotype siegele altered cell surface area-to-volume ratio 2020-07-22T20:32:47Z OMP:0007999 microbial_phenotype siegele spore morphology phenotype 2015-06-03T13:12:00Z A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe. FAO:0000019 OMP:0008000 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. kanderson microbial_phenotype A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe. OMP:KDA spore FAO:0000019 endospore germ cell wall phenotype 2015-06-08T12:07:41Z An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination. OMP:0008001 kanderson microbial_phenotype An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination. OMP:KDA PMID:3101583 absence of an endospore germ cell wall 2015-06-08T12:10:22Z An endospore germ cell wall phenotype where an endospore lacks a germ cell wall. OMP:0008002 kanderson microbial_phenotype An endospore germ cell wall phenotype where an endospore lacks a germ cell wall. OMP:KDA presence of an endospore germ cell wall 2015-06-08T12:10:22Z An endospore germ cell wall phenotype where an endospore has a germ cell wall. OMP:0008003 kanderson microbial_phenotype An endospore germ cell wall phenotype where an endospore has a germ cell wall. OMP:KDA endospore core phenotype 2015-06-08T12:14:34Z An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid. OMP:0008004 kanderson microbial_phenotype An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid. ISBN:9780073402406 OMP:KDA absence of the endospore core 2015-06-08T12:16:08Z An endospore core phenotype where an endospore lacks a central core. OMP:0008005 kanderson microbial_phenotype An endospore core phenotype where an endospore lacks a central core. OMP:KDA presence of a core 2015-06-08T12:16:08Z An endospore core phenotype where the central core is present in an endospore. OMP:0008006 kanderson microbial_phenotype An endospore core phenotype where the central core is present in an endospore. OMP:KDA endospore coat phenotype 2015-06-08T12:18:25Z An endospore external encapsulating structure phenotype related to the endospore coat, which is on the exterior of all spores and is composed of many structural proteins that confer additional resistance. OMP:0008007 kanderson microbial_phenotype An endospore external encapsulating structure phenotype related to the endospore coat, which is on the exterior of all spores and is composed of many structural proteins that confer additional resistance. OMP:KDA PMID:3101583 absence of an endospore coat 2015-06-08T12:19:49Z An endospore coat phenotype where an endospore lacks a coat layer. OMP:0008008 kanderson microbial_phenotype An endospore coat phenotype where an endospore lacks a coat layer. OMP:KDA presence of an endospore coat 2015-06-08T12:19:49Z An endospore coat phenotype where an endospore has a coat layer. OMP:0008009 kanderson microbial_phenotype An endospore coat phenotype where an endospore has a coat layer. OMP:KDA outer endospore membrane phenotype 2015-06-08T12:21:48Z An endospore external encapsulating structure phenotype related to the outer endospore membrane, a phospholipid bilayer, derived from the mother cell, located between the endospore cortex and endospore coat. GO:0043594 OMP:0008010 kanderson microbial_phenotype outer endospore membrane GO:0043594 An endospore external encapsulating structure phenotype related to the outer endospore membrane, a phospholipid bilayer, derived from the mother cell, located between the endospore cortex and endospore coat. GO:0043594 OMP:KDA PMID:3101583 absence of an outer endospore membrane 2015-06-08T12:23:37Z An outer endospore membrane phenotype where an endospore lacks an outer membrane. OMP:0008011 kanderson microbial_phenotype An outer endospore membrane phenotype where an endospore lacks an outer membrane. OMP:KDA presence of an outer endospore membrane 2015-06-08T12:23:37Z An outer endospore membrane phenotype where an endospore has an outer membrane. OMP:0008012 kanderson microbial_phenotype An outer endospore membrane phenotype where an endospore has an outer membrane. OMP:KDA endospore internal structure phenotype 2015-06-08T12:43:22Z An endospore morphology phenotype that relates to the inner membrane or core of an endospore. OMP:0008013 kanderson microbial_phenotype An endospore morphology phenotype that relates to the inner membrane or core of an endospore. OMP:KDA inner endospore membrane phenotype 2015-06-08T12:45:57Z An endospore internal structure phenotype related to the inner membrane, which surrounds the core. OMP:0008014 kanderson microbial_phenotype An endospore internal structure phenotype related to the inner membrane, which surrounds the core. OMP:KDA PMID:3101583 absence of an inner endospore membrane 2015-06-08T12:50:07Z An inner endospore membrane phenotype where an endospore lacks an inner membrane. OMP:0008015 kanderson microbial_phenotype An inner endospore membrane phenotype where an endospore lacks an inner membrane. OMP:KDA presence of an inner endospore membrane 2015-06-08T12:50:07Z An inner endospore membrane phenotype where the endospore has an inner membrane. OMP:0008016 kanderson microbial_phenotype An inner endospore membrane phenotype where the endospore has an inner membrane. OMP:KDA endospore formation stopped at stage 0 2015-06-08T13:04:15Z An interrupted endospore formation phenotype where sporulation is stopped before any visible morphological changes have occurred, and the cell or cells have the appearance of vegetative cells. In many bacteria, the first visible morphological change in sporulation is formation of an asymmetric septum that separates the mother cell and forespore compartments. OMP:0008017 kanderson microbial_phenotype An interrupted endospore formation phenotype where sporulation is stopped before any visible morphological changes have occurred, and the cell or cells have the appearance of vegetative cells. OMP:KDA PMID:3101583 interrupted endospore formation 2015-06-08T13:06:18Z An altered endospore formation phenotype where development of the endospore is interrupted before the process is complete. OMP:0008018 kanderson microbial_phenotype An altered endospore formation phenotype where development of the endospore is interrupted before the process is complete. OMP:KDA endospore formation stopped at stage II 2015-06-08T13:07:39Z An interrupted endospore formation phenotype where sporulation is stopped after formation of the septum, but before engulfment of the forespore by the mother cell. OMP:0008019 kanderson microbial_phenotype An interrupted endospore formation phenotype where sporulation is stopped after formation of the septum, but before engulfment of the forespore by the mother cell. OMP:KDA PMID:3101583 endospore formation stopped at stage III 2015-06-08T13:08:51Z An interrupted endospore formation phenotype where sporulation is stopped after engulfment but before production of the endospore cortex and coat. OMP:0008020 kanderson microbial_phenotype An interrupted endospore formation phenotype where sporulation is stopped after engulfment but before production of the endospore cortex and coat. OMP:KDA PMID:3101583 endospore formation stopped at stage IV 2015-06-08T13:09:45Z An interrupted endospore formation phenotype where sporulation is stopped after deposition of the cortex and germ cell wall, but before formation of the endospore coat. OMP:0008021 kanderson microbial_phenotype An interrupted endospore formation phenotype where sporulation is stopped after deposition of the cortex and germ cell wall, but before formation of the endospore coat. OMP:KDA PMID:3101583 endospore formation stopped at stage V 2015-06-08T13:10:24Z An interrupted endospore formation phenotype where sporulation is stopped after formation of the coat, but before the endospore has developed its characteristic resistance properties. OMP:0008022 kanderson microbial_phenotype An interrupted endospore formation phenotype where sporulation is stopped after formation of the coat, but before the endospore has developed its characteristic resistance properties. OMP:KDA PMID:3101583 endospore formation stopped at stage VI 2015-06-08T13:11:05Z An interrupted endospore formation phenotype where endospore formation and maturation is complete, but before lysis of the mother cell. OMP:0008023 kanderson microbial_phenotype An interrupted endospore formation phenotype where endospore formation and maturation is complete, but before lysis of the mother cell. OMP:KDA PMID:3101583 endospore cortex phenotype 2015-06-08T13:20:48Z An endospore external encapsulating structure phenotype that relates to the endospore cortex, a layer surrounding an endospore that lies between the outer and inner endospore membranes and consists of peptidoglycan which is typically less cross-linked than that found in vegetable cell walls. GO:0043595 OMP:0008024 kanderson microbial_phenotype endospore cortex GO:0043595 An endospore external encapsulating structure phenotype that relates to the endospore cortex, a layer surrounding an endospore that lies between the outer and inner endospore membranes and consists of peptidoglycan which is typically less cross-linked than that found in vegetable cell walls. GO:0043595 OMP:KDA absence of an endospore cortex 2015-06-08T13:22:06Z An endospore cortex phenotype where an endospore lacks a cortex. OMP:0008025 kanderson microbial_phenotype An endospore cortex phenotype where an endospore lacks a cortex. OMP:KDA presence of a cortex 2015-06-08T13:22:06Z An endospore cortex phenotype where an endospore has a cortex. OMP:0008026 kanderson microbial_phenotype An endospore cortex phenotype where an endospore has a cortex. OMP:KDA altered endospore coat 2015-06-08T13:24:49Z An endospore coat phenotype where the endospore coat is altered relative to a designated control. OMP:0008027 kanderson microbial_phenotype An endospore coat phenotype where the endospore coat is altered relative to a designated control. OMP:KDA genetic transfer phenotype 2017-10-23T14:35:30Z A genetic material phenotype relating to the ability of microbes to serve as a donor of recipient in the transfer of genetic material. OMP:0008028 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Tianyizhou microbial_phenotype altered endospore cortex 2015-06-08T13:30:48Z An endospore cortex phenotype where the endospore cortex is altered relative to a designated control. OMP:0008029 kanderson microbial_phenotype An endospore cortex phenotype where the endospore cortex is altered relative to a designated control. OMP:KDA altered endospore germ cell wall 2015-06-08T13:31:51Z An endospore germ cell wall phenotype where the germ cell wall is altered relative to a designated control. OMP:0008030 kanderson microbial_phenotype An endospore germ cell wall phenotype where the germ cell wall is altered relative to a designated control. OMP:KDA altered exosporium 2015-06-08T13:32:47Z An endospore exosporium phenotype where the exposporium is altered relative to a designated control. OMP:0008031 kanderson microbial_phenotype An endospore exosporium phenotype where the exposporium is altered relative to a designated control. OMP:KDA altered outer membrane 2015-06-08T13:33:31Z An outer endospore membrane phenotype where the outer membrane is altered relative to a designated control. OMP:0008032 kanderson microbial_phenotype An outer endospore membrane phenotype where the outer membrane is altered relative to a designated control. OMP:KDA altered core 2015-06-08T13:34:26Z An endospore core phenotype where the core is altered relative to a designated control. OMP:0008033 kanderson microbial_phenotype An endospore core phenotype where the core is altered relative to a designated control. OMP:KDA altered inner endospore membrane 2015-06-08T13:35:10Z An inner endospore membrane phenotype where the inner membrane is altered relative to a designated control. OMP:0008034 kanderson microbial_phenotype An inner endospore membrane phenotype where the inner membrane is altered relative to a designated control. OMP:KDA natural competence phenotype 2017-10-23T14:46:29Z A genetic transfer phenotype related to the ability of microbes to take up extracellular DNA from the environment under natural conditions. OMP:0008035 Tianyizhou microbial_phenotype A genetic transfer phenotype related to the ability of microbes to take up extracellular DNA from the environment under natural conditions. GO: OMP:tz absence of natural competence 2017-10-23T14:52:25Z A natural competence phenotype where a microbe lacks the ability to be transformed by taking up extracellular DNA from the environment. OMP:0008036 Tianyizhou microbial_phenotype A natural competence phenotype where a microbe lacks the ability to be transformed by taking up extracellular DNA from the environment. OMP:tz altered natural competence 2017-10-23T14:52:29Z A natural competence phenotype where the rate, frequency, timing, or extent of natural competence is altered relative to a designated control. OMP:0008037 Tianyizhou microbial_phenotype A natural competence phenotype where the rate, frequency, timing, or extent of natural competence is altered relative to a designated control. OMP:TZ presence of natural competence 2017-10-23T14:52:33Z A natural competence phenotype where a microbe has the ability to be transformed by taking up extracellular DNA from the environment. OMP:0008038 Tianyizhou microbial_phenotype A natural competence phenotype where a microbe has the ability to be transformed by taking up extracellular DNA from the environment. OMP:tz decreased natural competence 2017-10-23T15:15:23Z An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is decreased relative to a designated control. OMP:0008039 Tianyizhou microbial_phenotype An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is decreased relative to a designated control. OMP:TZ increased natural competence 2017-10-23T15:15:35Z An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is increased relative to a designated control. OMP:0008040 Tianyizhou microbial_phenotype An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is increased relative to a designated control. OMP:TZ abolished natural competence 2017-10-23T17:55:59Z A decreased natural competence phenotype where the ability to be transformed by taking up extracellular DNA is abolished. OMP:0008041 Tianyizhou microbial_phenotype A decreased natural competence phenotype where the ability to be transformed by taking up extracellular DNA is abolished. OMP:TZ plaque morphology phenotype 2017-12-12T17:17:11Z A bacteriophage plaque morphology phenotype that describe the appearance, size of viral plaques. OMP:0008043 Tianyizhou microbial_phenotype true A bacteriophage plaque morphology phenotype that describe the appearance, size of viral plaques. OMP:TZ plaque size phenotype 2017-12-12T17:33:04Z A bacteriophage plaque morphology phenotype that describe the size of viral plaques. OMP:0008044 Tianyizhou microbial_phenotype true A bacteriophage plaque morphology phenotype that describe the size of viral plaques. OMP:TZ altered plaque morphology phenotype 2017-12-12T17:36:55Z A bacteriophage plaque morphology phenotype where the appearance, size of viral plaque is altered relative to a designated control. OMP:0008045 Tianyizhou microbial_phenotype true A bacteriophage plaque morphology phenotype where the appearance, size of viral plaque is altered relative to a designated control. OMP:TZ altered plaque size phenotype 2017-12-12T17:39:30Z A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control. OMP:0008046 Tianyizhou microbial_phenotype true plaque appearance phenotype 2017-12-12T17:41:00Z A bacteriophage plaque morphology phenotype that describe the appearance of viral plaques. OMP:0008047 Tianyizhou microbial_phenotype true altered plaque morphology phenotype 2017-12-12T17:59:53Z A bacteriophage plaque morphology phenotype where the appearance and the size of the plaque is altered to a designated control. OMP:0008048 Tianyizhou microbial_phenotype A bacteriophage plaque morphology phenotype where the appearance and the size of the plaque is altered to a designated control. OMP:TZ altered plaque size phenotype 2017-12-12T18:02:15Z A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control. OMP:0008049 Tianyizhou microbial_phenotype A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control. OMP:TZ plaque size phenotype 2017-12-12T18:35:39Z A bacteriophage plaque morphology phenotype that describe the size of viral plaques. OMP:0008050 Tianyizhou microbial_phenotype true altered plaque appearance 2017-12-12T18:37:06Z A bacteriophage plaque morphology phenotype where the appearance of viral plaque is altered relative to a designated control. OMP:0008051 Tianyizhou microbial_phenotype more turbid plaque appearance 2017-12-12T18:38:28Z An altered bacteriophage plaque morphology phenotype where the appearance of a viral plaque is more turbid than a designated control. OMP:0008052 Tianyizhou microbial_phenotype An altered bacteriophage plaque morphology phenotype where the appearance of a viral plaque is more turbid than a designated control. OMP:tz clearer plaque appearance 2017-12-12T18:39:01Z An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque is clearer relative to a designated control. OMP:0008053 Tianyizhou microbial_phenotype increased plaque size phenotype 2017-12-12T18:40:37Z A bacteriophage plaque morphology phenotype where the size of viral plaque is increased relative to a designated control. OMP:0008054 Tianyizhou microbial_phenotype decreased plaque size phenotype 2017-12-12T18:41:48Z A bacteriophage plaque morphology phenotype where the size of viral plaque is decreased relative to a designated control. OMP:0008055 Tianyizhou microbial_phenotype plaque morphology phenotype 2018-02-16T16:16:46Z A bacteriophage plaque morphology phenotype where the bacteria shows a certain size and appearance of the plaque. OMP:0008057 Tianyizhou microbial_phenotype plaque appearance phenotype 2018-02-16T16:21:31Z A bacteriophage plaque morphology phenotype where bacteria shows an appearance of the viral plaque. OMP:0008058 Tianyizhou microbial_phenotype plaque size phenotype 2018-02-16T16:24:07Z A bacteriophage plaque morphology phenotype where bacteria shows an size of the viral plaque. OMP:0008059 Tianyizhou microbial_phenotype turbid plaque appearance 2018-02-16T16:26:00Z A bacteriophage plaque morphology phenotype where the viral plaque has a turbid appearance. OMP:0008060 Tianyizhou microbial_phenotype A bacteriophage plaque morphology phenotype where the viral plaque has a turbid appearance. OMP:tz clear plaque appearance 2018-02-16T16:26:05Z A bacteriophage plaque morphology phenotype where the viral plaque appears to be clear. OMP:0008061 Tianyizhou microbial_phenotype bull's eye plaque appearance morphology 2018-02-16T16:31:45Z An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque has a high central density of surviving colonies and then a depletion region, followed by a high-colony-density region and then finally an apparently clear zone. OMP:0008062 Tianyizhou microbial_phenotype true altered to fuzzy edge plaque appearance 2018-02-16T16:32:23Z An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque edge becomes fuzzy relative to a designated control. OMP:0008063 Some mutant in phage T4 will cause the edge of the plaque become fuzzy. Tianyizhou microbial_phenotype bull's eye plaque appearance 2018-02-16T17:34:00Z A bacteriophage plaque morphology phenotype where the appearance of viral plaque has a high central density of surviving colonies and then a depletion region, followed by a high-colony-density region and then finally an apparently clear zone. OMP:0008064 T7 will create bull's eye plaque on e.coli Hfr strain. Tianyizhou cocarde bacteriophage plaque phenotype hazy bacteriophage plaque morphology microbial_phenotype altered to bull's eye plaque appearance 2018-02-16T17:48:35Z An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque change from either clear or turbid to bull's eye. OMP:0008065 Tianyizhou cocarde plaque morphology hazy plaque morphology microbial_phenotype quality A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities PATO:0000001 PATO:0000072 quality trait A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities PATOC:GVG mobility A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. PATO:0000004 Should be defined using translocation. quality A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. PATOC:GVG concentration of A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. PATO:0000033 concentration quality A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. Wikipedia:http://en.wikipedia.org/wiki/concentration frequency A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. PATO:0000044 quality A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. Wikipedia:http://en.wikipedia.org/wiki/frequency morphology A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. PATO:0000051 quality A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. PATOC:GVG shape A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). PATO:0000052 PATO:0001647 Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. quality relational shape quality A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). PATOC:GVG trophic quality An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. PATO:0000056 nutritional quality quality An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. Wikipedia:http://en.wikipedia.org/wiki/Trophic_level occurrence A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. PATO:0000057 PATO:0000156 PATO:0000158 incidence quality temporal A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. PATOC:GVG spatial pattern A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. PATO:0000060 PATO:0000132 PATO:0001565 distribution pattern quality A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. PATOC:GVG qualitative PATO:0000068 TODO: define this or obsolete it and move children somewhere else. quality deviation(from_normal) A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. PATO:0000069 quality A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. PATOC:GVG amount PATO:0000053 PATO:0000070 PATO:0000071 PATO:0001169 PATO:0001226 The number of entities of this type that are part of the whole organism. This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. count count in organism number presence presence or absence in organism quality quantitative PATOC:GVG The number of entities of this type that are part of the whole organism. size A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. PATO:0000117 quality A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. WordNet:WordNet length A 1-D extent quality which is equal to the distance between two points. PATO:0000122 quality A 1-D extent quality which is equal to the distance between two points. PATOC:GVG orientation A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. PATO:0000133 PATO:0000137 amount of rotation angle angular magnitude angular placement plane angle quality A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. PATOC:JE position A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. PATO:0000140 PATO:0001032 PATO:0001631 location placement quality relational spatial quality A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. PATOC:GVG structure A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. PATO:0000141 PATO:0001452 conformation quality relational structural quality VT:1000738 conformation A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. PATOC:GVG temperature A physical quality of the thermal energy of a system. PATO:0000146 quality A physical quality of the thermal energy of a system. PATOC:GVG texture A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. PATO:0000150 quality A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. PATOC:GVG rate A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. PATO:0000161 quality A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. PATOC:melissa viability An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. PATO:0000169 quality An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. PATOC:GVG arrested A quality of a process which ends earlier than the natural end time or reference process. PATO:0000297 PATO:0001508 TODO: the definition is incorrect. See absent. abolished incomplete quality A quality of a process which ends earlier than the natural end time or reference process. PATOC:LC irregular spatial pattern A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. PATO:0000330 quality A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. PATOC:GVG branched A branchiness quality inhering in a bearer by virtue of the bearer's having branches. PATO:0000402 quality ramified ramiform A branchiness quality inhering in a bearer by virtue of the bearer's having branches. WordNet:WordNet curved A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. PATO:0000406 bowing curled quality A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. WordNet:WordNet circular A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. PATO:0000411 quality round rounded A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. thefreedictionary.com:thefreedictionary.com unbranched A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. PATO:0000414 microbial_phenotype A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. PATOC:GVG auxotrophic A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. PATO:0000422 quality A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic prototrophic A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. PATO:0000423 microbial_phenotype A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. Wikipedia:http://en.wikipedia.org/wiki/Prototrophic regular spatial pattern A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. PATO:0000440 microbial_phenotype A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. PATOC:GVG abnormal A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. PATO:0000460 aberrant atypia atypical defective quality A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. PATOC:GVG normal A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. PATO:0000461 average quality A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. PATOC:GVG absent A quality denoting the lack of an entity. Example: [ E=wing Q=absent ] -applies to an organism that lacks wings. Note that this is the reciprocal quality to the relational quality "lacks all parts of type". This means that [E=wing Q=absent] is replaceable with [E=organism Q=lacks_all_parts_of_type E2=Wing]. The latter is preferable as it allows greater precision in stating what is lacking from where. E.g. We can say [E=spermatocyte Q=lacks_all_parts_of_type E2=aster] to describe spermatocytes that have no asters. PATO:0000462 PATO:0001996 absence absent from organism quality A quality denoting the lack of an entity. thefreedictionary.:thefreedictionary. present A quality inhering in a bearer by virtue of the bearer's existence. PATO:0000467 present in organism quality A quality inhering in a bearer by virtue of the bearer's existence. PATOC:GVG increased duration A duration quality of a process which is relatively high. PATO:0000498 PATO:0000715 chronic high time increased period increased time prolonged period quality slow time A duration quality of a process which is relatively high. PATOC:GVG decreased duration A duration quality of a process which is relatively low. PATO:0000499 PATO:0000716 decreased period decreased time fast time low period quality shortened period A duration quality of a process which is relatively low. PATOC:GVG delayed A quality of a process which starts later than the natural start time or the reference process. PATO:0000502 late quality A quality of a process which starts later than the natural start time or the reference process. PATOC:LC increased length A length quality which is relatively large. PATO:0000573 long quality A length quality which is relatively large. PATOC:GVG decreased length A length quality which is relatively small. PATO:0000574 quality short shortened stubby A length quality which is relatively small. PATOC:GVG increased size A size quality which is relatively high. PATO:0000586 PATO:0001202 big enlarged expanded great large quality A size quality which is relatively high. PATOC:GVG decreased size A size quality which is relatively low. PATO:0000587 hypoplasia quality reduced small tiny underdeveloped A size quality which is relatively low. PATOC:GVG increased thickness A thickness which is relatively high. PATO:0000591 high thickness quality stout thick thickened A thickness which is relatively high. PATOC:GVG decreased thickness A thickness which is relatively low. PATO:0000592 low thickness quality slender thin A thickness which is relatively low. PATOC:GVG increased volume A volume which is relatively high. PATO:0000595 high volume large volume quality A volume which is relatively high. PATOC:GVG decreased volume A volume which is relatively low. PATO:0000596 low volume quality small volume A volume which is relatively low. PATOC:GVG bent A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. PATO:0000617 quality A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. PATOC:MAH mislocalised A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. PATO:0000621 PATO:0000628 ectopic mislocalized quality A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. PATOC:GVG fused with A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. PATO:0000642 coalesced fused fused to joined with merged with quality A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. PATOC:GVG unfused from A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. PATO:0000651 microbial_phenotype unfused A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. PATOC:nw continuous A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. PATO:0000429 PATO:0000689 quality uninterrupted A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. thefreedictionary.com:thefreedictionary.com discontinuous A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. PATO:0000426 PATO:0000690 intermittent interrupted quality A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. thefreedictionary.com:thefreedictionary.com premature A quality of a process which starts earlier than the natural start time or the reference process. PATO:0000691 PATO:0000694 PATO:0002086 advanced early precocious quality A quality of a process which starts earlier than the natural start time or the reference process. PATO:LC rough A texture quality inhering in a bearer by virtue of the bearer's irregular surface. PATO:0000700 PATO:0001616 coarse quality A texture quality inhering in a bearer by virtue of the bearer's irregular surface. PATOC:GVG smooth A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. PATO:0000701 microbial_phenotype A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. PATOC:GVG lethal (sensu genetics) A viability quality inhering in a population by virtue of the bearer's long term survival inability. PATO:0000718 quality A viability quality inhering in a population by virtue of the bearer's long term survival inability. PATOC:GVG viable A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. PATO:0000719 quality A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. PATOC:GVG decreased rate A rate which is relatively low. PATO:0000911 quality slow rate A rate which is relatively low. PATO:GVG increased rate A rate which is relatively high. PATO:0000912 fast rate high rate quality A rate which is relatively high. PATO:GVG thickness A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. PATO:0000915 quality A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. WordNet:WordNet volume A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. PATO:0000918 quality A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. PATOC:GVG sharpness A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. PATO:0000944 apiculate quality A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. PATOC:GVG elliptic A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. PATO:0000947 ellipse-shaped ellipsoid elliptical oval ovoid quality A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. PATOC:GVG permeability A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). PATO:0000970 quality A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). Biology-online:Biology-online permeable A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). PATO:0000982 porous quality A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). Biology-online:Biology-online impermeable A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion). PATO:0000983 microbial_phenotype A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion). Biology-online:Biology-online physical quality A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. PATO:0001018 PATO:0002079 Wikipedia:Physical_property quality relational physical quality A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. PATOC:GVG concentrated A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. PATO:0001159 quality A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. PATOC:GVG increased concentration A concentration which is higher relative to the normal or average. PATO:0001162 high concentration quality A concentration which is higher relative to the normal or average. PATOC:GVG decreased concentration A concentration which is lower relative to the normal or average. PATO:0001163 low concentration quality A concentration which is lower relative to the normal or average. PATOC:GVG process quality A quality which inheres in an process. PATO:0001236 PATO:0001239 PATO:0001240 See comments of relational quality of a physical entity. quality quality of a process quality of occurrent quality of process relational quality of occurrent A quality which inheres in an process. PATOC:GVG physical object quality A quality which inheres in a continuant. PATO:0001237 PATO:0001238 PATO:0001241 Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. monadic quality of a continuant monadic quality of an object monadic quality of continuant multiply inhering quality of a physical entity quality quality of a continuant quality of a single physical entity quality of an object quality of continuant snap:Quality A quality which inheres in a continuant. PATOC:GVG increased temperature A temperature which is relatively high. PATO:0000678 PATO:0001305 high temperature hot quality A temperature which is relatively high. PATOC:GVG decreased temperature A temperature which is relatively low. PATO:0000677 PATO:0001306 cold low temperature quality A temperature which is relatively low. PATOC:GVG duration A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. PATO:0000081 PATO:0001309 period quality time A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. PATOC:mellybelly convex A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. PATO:0001355 microbial_phenotype A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. PATOC:GVG lobate A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. PATO:0001367 quality A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. PATOC:GVG cellular quality A monadic quality of continuant that exists at the cellular level of organisation. PATO:0001396 quality A monadic quality of continuant that exists at the cellular level of organisation. PATOC:GVG nucleate quality A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. PATO:0001404 quality A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. PATOC:GVG binucleate A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. PATO:0001406 quality A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. Biology-online:Biology-online mononucleate A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. PATO:0001407 quality A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. Biology-online:Biology-online sharp A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. PATO:0001419 quality A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. PATOC:GVG attachment quality A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. PATO:0001435 quality A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. PATOC:GVG wholeness A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. PATO:0001442 quality A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. thefreedictionary.com:thefreedictionary.com broken A broken quality inhering in a bearer by virtue of the bearer's being broken open. PATO:0001443 PATO:0001444 PATO:0001820 burst cracked fractured fragmented hemorrhaged quality ruptured split torn A broken quality inhering in a bearer by virtue of the bearer's being broken open. PATOC:GVG detached from An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. PATO:0001453 detached quality An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. PATOC:GVG sensitivity of a process A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. PATO:0001457 quality sensitivity of occurrent A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. PATOC:GVG spherical A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). PATO:0000408 PATO:0001499 globular quality rotund A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). WordNet:WordNet delaminated A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. PATO:0001514 quality A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. PATOC:cjm increased sensitivity of a process A sensitivity of a process which is higher than normal or average. PATO:0001551 high sensitivity of occurrent increased sensitivity of occurrent quality A sensitivity of a process which is higher than normal or average. PATO:GVG decreased sensitivity of a process A sensitivity of a process which is lower than normal or average. PATO:0001552 decreased sensitivity of occurrent low sensitivity of occurrent quality A sensitivity of a process which is lower than normal or average. PATO:GVG has number of OBO_REL:has_part PATO:0001555 The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. cardinality extra or missing physical or functional parts has or lacks parts of type mereological quality number number of quality PATOC:CJM The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. lacking processual parts A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. PATO:0001558 quality A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. PATOC:GVG having extra processual parts A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. PATO:0001561 having supernumerary processual parts quality A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. PATOC:GVG extra or missing processual parts A quality of a process inhering in a bearer by virtue of the bearer's processual parts. PATO:0001564 quality A quality of a process inhering in a bearer by virtue of the bearer's processual parts. PATOC:GVG increased permeability A permeability which is relatively high. PATO:0001577 high permeability quality A permeability which is relatively high. PATO:GVG decreased permeability A permeability which is relatively low. PATO:0001578 low permeability microbial_phenotype A permeability which is relatively low. PATO:GVG curvature A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. PATO:0001591 quality A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. WordNet:WordNet protruding A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. PATO:0001598 PATO:0001644 protruding quality relational protruding quality A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. WordNet:WordNet aggregated A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. PATO:0001629 clumped clustered quality A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. WordNet:WordNet dispersed A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. PATO:0001630 quality A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. WordNet:WordNet stubby A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. PATO:0001643 quality A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. thefreedictionary.com:thefreedictionary.com 1-D extent 1-D size A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. PATO:0001708 quality A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. PATOC:GVG 3-D extent 3D size A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. PATO:0001710 quality A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. PATOC:GVG split A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. PATO:0001786 clefted divided forked quality septate A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. die.net:die.net kinked A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. PATO:0001798 quality tightly curled twisted A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. thefreedictionary.com:thefreedictionary.com imperforate A structural quality inhering in a bearer by virtue of the bearer's having no opening. PATO:0001821 microbial_phenotype A structural quality inhering in a bearer by virtue of the bearer's having no opening. thefreedictionary.com:thefreedictionary.com tangled A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. PATO:0001846 quality A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. answers.com:answers.com constricted A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. PATO:0001837 PATO:0001847 quality stenosis stenotic stricture A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. WordNet:WordNet concave A shape quality in a bearer by virtue of the bearer's curving inward. PATO:0001857 quality A shape quality in a bearer by virtue of the bearer's curving inward. WordNet:WordNet spheroid A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. PATO:0001864 PATO:0001865 quality sphericality A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. Wikipedia:http://en.wikipedia.org/wiki/Spheroid sigmoid A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. PATO:0001878 S-shaped quality sigmoidal A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. PATOC:CJM has normal numbers of parts of type PATO:0001905 The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. having physical part quality PATOC:CJM The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. multinucleate A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. PATO:0001908 quality A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. PATOC:GVG surface feature shape A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. PATO:0001925 This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. quality A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. PATOC:CJM organismal quality A quality that inheres in an entire organism or part of an organism. PATO:0001995 quality A quality that inheres in an entire organism or part of an organism. PATOC:CJM lacks parts or has fewer parts of type PATO:0001999 The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. loss of quality PATOC:CJM The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. lacks all parts of type A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. OBO_REL:lacks_part PATO:0001557 PATO:0002000 lacks all physical parts of type quality A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. PATOC:CJM has fewer parts of type Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. PATO:0001569 PATO:0002001 The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. decreased number of has decreased number of has fewer physical parts of type quality PATOC:CJM The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. has extra parts of type In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q=<this> E2=finger. PATO:0001560 PATO:0002002 The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. has extra parts of has increased number of having extra physical parts having supernumerary physical parts increased number of quality PATOC:CJM The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. concavity PATO:0002005 Surface shape that refers to the inward or outward curvature of the surface. quality PATOC:MAH Surface shape that refers to the inward or outward curvature of the surface. 2-D shape 2-D projection A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. PATO:0002006 cross-sectional quality A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. PATOC:CJM convex 3-D shape A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png PATO:0002007 Use this term or an is_a child of this term when the entire shape of the object is known. quality A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. PATOC:CJM concave 3-D shape A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png PATO:0002008 quality A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. PATOC:CJM branchiness A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. PATO:0002009 quality A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. PATOC:MAH structure, cavities A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. PATO:0002014 quality A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. PATOC:GVG increased occurrence 2009-03-26T11:10:11Z An occurrence which is relatively high. George Gkoutos PATO:0002051 increased incidence quality An occurrence which is relatively high. PATOC:GVG decreased occurrence 2009-03-26T11:12:35Z An occurrence which is relatively low. George Gkoutos PATO:0002052 decreased incidence quality An occurrence which is relatively low. PATOC:GVG physical quality of a process 2009-06-05T09:16:46Z PATO:0002062 george quality altered number of 2009-09-21T10:41:58Z George Gkoutos Having extra or fewer parts. PATO:0002083 quality Having extra or fewer parts. PATOC:GVG perforate 2009-10-05T03:37:05Z A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. PATO:0000649 PATO:0002112 george permeable pierced quality A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. answers.com:answers.com displaced 2010-03-01T02:56:33Z A positional quality inhering in a bearer by virtue the bearer's being changed in position. George Gkoutos PATO:0002181 quality A positional quality inhering in a bearer by virtue the bearer's being changed in position. PATOC:GVG molecular quality 2010-03-10T03:18:15Z A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. George Gkoutos PATO:0002061 PATO:0002182 quality relational molecular quality A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. PATOC:GVG obclavate 2010-07-08T01:47:09Z A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. PATO:0002213 george quality A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. PATOC:GVG teardrop-shaped 2010-07-23T02:31:11Z A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. PATO:0002240 drop shaped george quality A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. url:wordnetweb.princeton.edu/perl/webwn pointed 2010-09-08T03:15:16Z A shape quality inhering in a bearer by virtue of the bearer's having a point. PATO:0002258 george quality A shape quality inhering in a bearer by virtue of the bearer's having a point. PATOC:http://www.merriam-webster.com/dictionary/pointed 3-D shape 2010-10-05T12:31:16Z A shape that inheres in a 3 dimensional entity. PATO:0002266 george quality A shape that inheres in a 3 dimensional entity. PATOC:OREGON increased quality 2011-06-16T06:39:43Z A quality that has a value that is increased compared to normal or average. George Gkoutos PATO:0002300 quality A quality that has a value that is increased compared to normal or average. PATOC:GVG decreased quality 2011-06-16T06:40:15Z A quality that has a value that is decreased compared to normal or average. George Gkoutos PATO:0002301 quality A quality that has a value that is decreased compared to normal or average. PATOC:GVG decreased process quality 2011-06-16T06:50:59Z A quality of a process that has a value that is decreased compared to normal or average. George Gkoutos PATO:0002302 quality A quality of a process that has a value that is decreased compared to normal or average. PATOC:GVG decreased object quality 2011-06-16T06:51:54Z A quality of an object that has a value that is decreased compared to normal or average. George Gkoutos PATO:0002303 quality A quality of an object that has a value that is decreased compared to normal or average. PATOC:GVG increased process quality 2011-06-16T06:53:08Z A quality of a process that has a value that is increased compared to normal or average. George Gkoutos PATO:0002304 quality A quality of a process that has a value that is increased compared to normal or average. PATOC:GVG increased object quality 2011-06-16T06:54:01Z A quality of an object that has a value that is increased compared to normal or average. George Gkoutos PATO:0002305 quality A quality of an object that has a value that is increased compared to normal or average. PATOC:GVG superelliptic 2011-10-12T12:45:16Z A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt George Gkoutos Lamé curve PATO:0002318 quality A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt wiktionary:superellipse temporal distribution quality 2011-11-22T01:12:28Z A temporal distribution pattern of process occurrences within a regulation/reference process. George Gkoutos PATO:0002323 quality A temporal distribution pattern of process occurrences within a regulation/reference process. PATOC:LC offset quality 2011-11-23T11:46:00Z George Gkoutos PATO:0002324 The temporal relation between the end of the process with respect to a reference process. completeness extent quality PATOC:LC The temporal relation between the end of the process with respect to a reference process. GOC:CJM completeness GOC:CJM extent onset quality 2011-11-23T11:47:34Z George Gkoutos PATO:0002325 The temporal relation between the start of the process with respect to a reference process. initiation quality PATOC:LC The temporal relation between the start of the process with respect to a reference process. lemon-shaped 2012-01-31T03:55:16Z A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc PATO:0002345 gkoutos quality A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc PATOC:MH snowman-shaped 2012-01-31T03:58:10Z A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. PATO:0002346 gkoutos quality A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. PATOC:MH nucleated 2013-10-21T05:44:34Z A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. PATO:0002505 gkoutos quality A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. PATOC:GVG complete structure 2014-09-25T15:11:47Z A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. PATO:0005012 microbial_phenotype wasila.dahdul A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. PATOC:WD incomplete structure 2014-09-25T15:12:35Z A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. PATO:0005013 quality wasila.dahdul A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. PATOC:WD C-shaped A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. PATO:0015019 quality A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. github:mah11 https://github.com/pato-ontology/pato/issues/96 J-shaped A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. PATO:0015020 quality A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. github:mah11 https://github.com/pato-ontology/pato/issues/96