uberon import.owl
type: Ontology
comment: PERSON: Fernanda Farinelli This owl file represents the necessary entities of UBERON that are reused in OntONeo Ontology. This file was created using Ontofox and some intermediary entities were not imported.
comment: UBERON subset applied to OntONeo ontology.
title: Uberon multi-species anatomy ontology

external_definition
type: AnnotationProperty
IAO_0000115: An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.
has db xref: UBPROP:0000001
has OBO namespace: uberon
id: external_definition
is metadata tag: 1
shorthand: external_definition
comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO

homology_notes
type: AnnotationProperty
IAO_0000115: Notes on the homology status of this class.
has db xref: UBPROP:0000003
has OBO namespace: uberon
id: homology_notes
is metadata tag: 1
shorthand: homology_notes
comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO

taxon_notes
type: AnnotationProperty
IAO_0000115: Notes on the how instances of this class vary across species.
has db xref: UBPROP:0000008
has OBO namespace: uberon
id: taxon_notes
is metadata tag: 1
shorthand: taxon_notes

external_ontology_notes
type: AnnotationProperty
IAO_0000115: Notes on how similar or equivalent classes are represented in other ontologies.
IAO_0000116: This annotation property may be replaced with an annotation property from an external ontology such as IAO
has db xref: UBPROP:0000012
has OBO namespace: uberon
id: external_ontology_notes
is metadata tag: 1
shorthand: external_ontology_notes

fully formed stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: post-embryonic stage
subclass of: Restriction
  on property: BFO_0000062
  some values from: organogenesis stage
subclass of: Restriction
  on property: BFO_0000063
  some values from: death stage
IAO_0000115: The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both sexually immature stage, and adult stage.
has broad synonym: adult stage
has db xref: BTO:0001043
has db xref: BilaDO:0000004
has db xref: EFO:0001272
has db xref: FBdv:00005369
has db xref: WBls:0000041
has db xref: XtroDO:0000084
has exact synonym: fully formed animal stage
has exact synonym: juvenile-adult stage
has OBO namespace: uberon
id: UBERON:0000066
in subset: efo slim

embryo stage part
type: Class
equivalent class: Class
  intersection of: life cycle stage
  intersection of: Restriction
    on property: BFO_0000050
    some values from: embryo stage
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: embryo stage
IAO_0000115: A stage that is part of the embryo stage.
has exact synonym: embryonic stage part
has OBO namespace: uberon
id: UBERON:0000067
in subset: grouping class

embryo stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000063
  some values from: fully formed stage
subclass of: Restriction
  on property: BFO_0000063
  some values from: post-embryonic stage
disjoint with: post-embryonic stage
IAO_0000115: A life cycle stage that starts with fertilization and ends with the fully formed embryo.
has db xref: http://www.snomedbrowser.com/Codes/Details/296280003
has db xref: BilaDO:0000002
has db xref: EV:0300001
has db xref: FBdv:00005289
has db xref: FMA:72652
has db xref: HsapDv:0000002
has db xref: MmusDv:0000002
has db xref: OGES:000000
has db xref: OGES:000022
has db xref: WBls:0000003
has db xref: WBls:0000092
has db xref: WBls:0000102
has db xref: XAO:1000012
has exact synonym: embryonic stage
has OBO namespace: uberon
has related synonym: embryogenesis
id: UBERON:0000068

death stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: RO_0002229
  some values from: life cycle
IAO_0000115: End of the life of an organism.
external_ontology_notes: ncit:Death is an outcome
has db xref: XAO:0000437
has db xref: XtroDO:0000085
has OBO namespace: uberon
has related synonym: death
id: UBERON:0000071

post-embryonic stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000062
  some values from: embryo stage
IAO_0000115: stage succeeding embryo, including mature structure
taxon_notes: In birds, the postnatal stage begins when the beak penetrates the shell (i.e., external pipping) (Brown et al. 1997)
has db xref: BilaDO:0000003
has db xref: OGES:000010
has db xref: OGES:000014
has db xref: OGES:000024
has db xref: WBls:0000022
has db xref: WBls:0000093
has db xref: WBls:0000103
has exact synonym: postembryonic stage
has narrow synonym: post-hatching stage
has OBO namespace: uberon
has related synonym: postembryonic
id: UBERON:0000092

life cycle
type: Class
subclass of: BFO_0000015
subclass of: Restriction
  on property: RO_0002224
  some values from: zygote stage
subclass of: Restriction
  on property: RO_0002230
  some values from: death stage
IAO_0000115: An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism.
has db xref: FBdv:00000000
has db xref: HsapDv:0000001
has db xref: MmusDv:0000001
has db xref: OGES:000011
has db xref: ncithesaurus:Life
has exact synonym: entire life cycle
has exact synonym: entire lifespan
has exact synonym: life
has exact synonym: lifespan
has OBO namespace: uberon
id: UBERON:0000104
in subset: upper level

life cycle stage
type: Class
subclass of: BFO_0000011
subclass of: Restriction
  on property: BFO_0000050
  some values from: life cycle
IAO_0000115: A spatiotemporal region encompassing some part of the life cycle of an organism.
IAO_0000116: this class represents a proper part of the life cycle of an organism. The class 'life cycle' should not be placed here
external_ontology_notes: the WBls class 'all stages' belongs here as it is the superclass of other WBls stages
external_ontology_notes: we map the ZFS unknown stage here as it is logically equivalent to saying *some* life cycle stage
has db xref: BILS:0000105
has db xref: EFO:0000399
has db xref: FBdv:00007012
has db xref: FMA:24120
has db xref: HsapDv:0000000
has db xref: MmusDv:0000000
has db xref: OlatDv:0000010
has db xref: PdumDv:0000090
has db xref: WBls:0000002
has db xref: XAO:1000000
has db xref: ZFS:0000000
has db xref: ZFS:0100000
has db xref: ncithesaurus:Developmental_Stage
has narrow synonym: developmental stage
has narrow synonym: stage
has OBO namespace: uberon
id: UBERON:0000105
in subset: efo slim
in subset: upper level

zygote stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: RO_0002223
  some values from: life cycle
IAO_0000115: A stage at which the organism is a single cell produced by means of sexual reproduction.
homology_notes: As in all metazoans, eumetazoan development begins with a fertilized egg, or zygote.[well established][VHOG]
has db xref: Zygote
has db xref: C12601
has db xref: BILS:0000106
has db xref: BilaDO:0000005
has db xref: EFO:0001322
has db xref: EHDAA:27
has db xref: EMAPA:16033
has db xref: FBdv:00005288
has db xref: HsapDv:0000001
has db xref: PdumDv:0000100
has db xref: VHOG:0000745
has db xref: XAO:1000001
has db xref: ZFS:0000001
has exact synonym: 1-cell stage
has exact synonym: fertilized egg stage
has exact synonym: one cell stage
has OBO namespace: uberon
has related synonym: fertilized egg stage
has related synonym: one-cell stage
has related synonym: zygote
has related synonym: zygotum
id: UBERON:0000106
in subset: efo slim

cleavage stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: RO_0002087
  some values from: zygote stage
IAO_0000115: The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula.
has db xref: Cleavage (embryo)
has db xref: BILS:0000107
has db xref: BilaDO:0000006
has db xref: EFO:0001290
has db xref: FBdv:00000054
has db xref: MESH:A16.254.270
has db xref: MmusDv:0000004
has db xref: OGES:000015
has db xref: OGES:000020
has db xref: PdumDv:0000200
has db xref: XAO:1000004
has db xref: ZFS:0000046
has OBO namespace: uberon
id: UBERON:0000107
in subset: efo slim

blastula stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000062
  some values from: cleavage stage
IAO_0000115: An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence.
IAO_0000116: consider adding a preceding stage 'morula stage' as part of cleavage
has db xref: Blastula
has db xref: BILS:0000108
has db xref: BilaDO:0000007
has db xref: EFO:0001282
has db xref: HsapDv:0000006
has db xref: MmusDv:0000007
has db xref: OGES:000003
has db xref: OGES:000016
has db xref: OGES:000021
has db xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
has db xref: WBls:0000005
has db xref: XAO:1000003
has db xref: ZFS:0000045
has OBO namespace: uberon
id: UBERON:0000108
in subset: efo slim

gastrula stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000062
  some values from: blastula stage
IAO_0000115: A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
has db xref: BILS:0000109
has db xref: BilaDO:0000008
has db xref: EFO:0001296
has db xref: FBdv:00005317
has db xref: HsapDv:0000010
has db xref: MmusDv:0000013
has db xref: OGES:000004
has db xref: OGES:000019
has db xref: WBls:0000010
has db xref: XAO:1000005
has db xref: ZFS:0000047
has OBO namespace: uberon
has related synonym: blastocystis trilaminaris stage
has related synonym: trilaminar blastocyst stage
has related synonym: trilaminar blastoderm stage
has related synonym: trilaminar disk stage
has related synonym: trilaminar germ stage
has related synonym: trilaminar stage
id: UBERON:0000109
in subset: efo slim

neurula stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000062
  some values from: gastrula stage
IAO_0000115: Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system.
has db xref: BILS:0000110
has db xref: BilaDO:0000009
has db xref: HsapDv:0000012
has db xref: MmusDv:0000017
has db xref: XAO:1000006
has OBO namespace: uberon
id: UBERON:0000110

organogenesis stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000062
  some values from: neurula stage
IAO_0000115: A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism.
has db xref: Organogenesis
has db xref: BILS:0000111
has db xref: BilaDO:0000010
has db xref: HsapDv:0000015
has db xref: MmusDv:0000018
has db xref: OGES:000005
has db xref: OGES:000032
has OBO namespace: uberon
has related synonym: segmentation stage
id: UBERON:0000111

sexually immature stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: fully formed stage
external_definition: The stage of being a sexually immature adult animal[XAO:1000010].
taxon_notes: In mammals this would include infant (nourishment from lactation) and juvenile (prepubertal no longer dependent on mother)
has db xref: BILS:0000112
has db xref: BTO:0002168
has db xref: EFO:0001300
has db xref: EV:0300051
has db xref: MmusDv:0000043
has db xref: OGES:000009
has db xref: XAO:1000010
has db xref: XtroDO:0000083
has db xref: ZFS:0000051
has exact synonym: immature stage
has narrow synonym: juvenile stage
has OBO namespace: uberon
has related synonym: subadult stage
id: UBERON:0000112
in subset: efo slim

post-juvenile adult stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: fully formed stage
subclass of: Restriction
  on property: BFO_0000062
  some values from: sexually immature stage
IAO_0000115: The stage of being a sexually mature adult animal.
has broad synonym: adult stage
has db xref: BILS:0000113
has db xref: EV:0300064
has db xref: EV:0300070
has db xref: MIAA:0000403
has db xref: MmusDv:0000110
has db xref: OGES:000026
has db xref: OGES:000027
has db xref: XAO:1000093
has db xref: ZFS:0000044
has OBO namespace: uberon
id: UBERON:0000113

amniotic fluid
type: Class
subclass of: FMA 9669
subclass of: Restriction
  on property: RO_0001025
  some values from: FMA_80223
subclass of: Restriction
  on property: RO_0002221
  some values from: FMA_69068
IAO_0000115: Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid.
has db xref: http://linkedlifedata.com/resource/umls/id/C0002638
has db xref: C13188
has db xref: BTO:0000068
has db xref: CALOHA:TS-0034
has db xref: ENVO:02000021
has db xref: EV:0100123
has db xref: FMA:305905
has db xref: GAID:1155
has db xref: MA:0002893
has db xref: MESH:D000653
has db xref: UMLS:C0002638
has db xref: VHOG:0001267
has OBO namespace: uberon
has related synonym: acqua amnii
has related synonym: liquor amnii
id: UBERON:0000173
in subset: pheno slim

peritoneal cavity
type: Class
equivalent class: Class
  intersection of: FMA_67552
  intersection of: Restriction
    on property: RO_0002220
    some values from: FMA_14703
  intersection of: Restriction
    on property: RO_0002220
    some values from: FMA_21451
  intersection of: Restriction
    on property: RO_0002572
    some values from: FMA 9908
subclass of: FMA_12241
subclass of: Restriction
  on property: BFO_0000050
  some values from: FMA 9908
IAO_0000115: Anatomical cavity bounded by visceral and parietal peritoneum
external_definition: The potential space between the parietal and visceral layers of the peritoneum, which are normally in contact. The peritoneal cavity is divided into the greater and lesser sac. The greater sac is the peritoneal cavity, and the lesser sac is the omental bursa. [TFD][VHOG]
homology_notes: In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG]
has db xref: Peritoneal cavity
has db xref: http://linkedlifedata.com/resource/umls/id/C1704247
has db xref: C12769
has db xref: http://www.snomedbrowser.com/Codes/Details/181616008
has db xref: BTO:0001782
has db xref: EHDAA2:0001446
has db xref: EMAPA:16138
has db xref: FMA:14704
has db xref: GAID:24
has db xref: MA:0000054
has db xref: MESH:A01.047.025.600.678
has db xref: UMLS:C1704247
has db xref: VHOG:0000852
has OBO namespace: uberon
has related synonym: cavitas peritonealis
has related synonym: saccus serosus peritonei
id: UBERON:0001179
in subset: pheno slim
in subset: uberon slim

mesenchyme
type: Class
subclass of: FMA 9637
subclass of: Restriction
  on property: RO_0002254
  some values from: FMA_69072
IAO_0000115: Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO].
IAO_0000116: the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense
external_definition: A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995.[TAO]
external_definition: Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage.[AAO]
UBPROP_0000007: mesenchymal
has db xref: Mesenchyme
has db xref: http://linkedlifedata.com/resource/umls/id/C0162415
has db xref: C13301
has db xref: AAO:0010427
has db xref: AEO:0000145
has db xref: BTO:0001393
has db xref: CALOHA:TS-0620
has db xref: EHDAA2:0003145
has db xref: EV:0100007
has db xref: TAO:0000393
has db xref: UMLS:C0162415
has db xref: VHOG:0000170
has db xref: XAO:0003046
has db xref: ZFA:0000393
has exact synonym: mesenchymal tissue
has exact synonym: mesenchyme tissue
has exact synonym: portion of mesenchymal tissue
has exact synonym: portion of mesenchyme tissue
has OBO namespace: uberon
has related synonym: mesenchyma
id: UBERON:0003104
in subset: pheno slim
in subset: uberon slim
in subset: vertebrate core

mesenchyme of umbilical cord
type: Class
equivalent class: Class
  intersection of: mesenchyme
  intersection of: Restriction
    on property: BFO_0000050
    some values from: FMA_85541
subclass of: mesenchyme
subclass of: Restriction
  on property: BFO_0000050
  some values from: FMA_85541
IAO_0000115: A gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]
IAO_0000116: TODO - check
has db xref: Wharton's jelly
has db xref: http://www.snomedbrowser.com/Codes/Details/368069009
has db xref: EMAPA:26127
has db xref: EMAPA:35925
has exact synonym: Wharton's jelly
has exact synonym: umbilical cord mesenchyme
has OBO namespace: uberon
id: UBERON:0003422

pharyngula stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000050
  some values from: organogenesis stage
IAO_0000115: A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities.
taxon_notes: Corresponds to E7-E11 in Mouse (Galis et al, TREE, 2001)
has db xref: Pharyngula
has db xref: DrerDO:0000052
has db xref: EFO:0001310
has db xref: OGES:000006
has db xref: ZFS:0000050
has exact synonym: phylotypic stage
has OBO namespace: uberon
has related synonym: pharyngula
id: UBERON:0004707
in subset: efo slim

late embryonic stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000062
  some values from: organogenesis stage
subclass of: Restriction
  on property: BFO_0000062
  some values from: pharyngula stage
IAO_0000115: An embryo stage that covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching.
has db xref: http://www.snomedbrowser.com/Codes/Details/367619004
has db xref: EV:0300011
has db xref: EVM:2990031
has db xref: FBdv:00005333
has db xref: FMA:63631
has db xref: MIAA:0000399
has db xref: MmusDv:0000031
has db xref: OGES:000023
has exact synonym: embryo late (growth) stage
has narrow synonym: fetal stage
has narrow synonym: fetus
has narrow synonym: fetus stage
has OBO namespace: uberon
has related synonym: embryo late growth stage
has related synonym: embryo late stage
id: UBERON:0007220

neonate stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: sexually immature stage
IAO_0000115: Of or pertaining to the period of time immediately following birth, or to the newborn.
IAO_0000116: consider splitting infant/newborn
has db xref: Infant
has db xref: Category:Infant organism
has db xref: Category:Newborn organism
has db xref: BTO:0001762
has db xref: EV:0300037
has db xref: HsapDv:0000082
has db xref: MmusDv:0000096
has db xref: NIF_Organism:birnlex_695
has db xref: OGES:000025
has exact synonym: neonatal stage
has narrow synonym: fledgling stage
has narrow synonym: hatchling
has narrow synonym: hatchling stage
has narrow synonym: infant stage
has narrow synonym: nestling stage
has narrow synonym: pouch stage
has narrow synonym: puggle
has narrow synonym: puggle stage
has OBO namespace: uberon
has related synonym: newborn stage
id: UBERON:0007221

late adult stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: post-juvenile adult stage
subclass of: Restriction
  on property: BFO_0000062
  some values from: prime adult stage
has db xref: http://linkedlifedata.com/resource/umls/id/C0001792
has db xref: C16268
has db xref: EV:0300123
has db xref: HsapDv:0000093
has db xref: NIF_Organism:birnlex_691
has db xref: UMLS:C0001792
has OBO namespace: uberon
has related synonym: elderly
has related synonym: elderly stage
has related synonym: geriatric
has related synonym: geriatric stage
id: UBERON:0007222

2 cell stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000050
  some values from: cleavage stage
subclass of: Restriction
  on property: RO_0002087
  some values from: zygote stage
has db xref: XAO:1000011
has db xref: XtroDO:0000006
has db xref: ZFS:0000002
has exact synonym: 2-cell stage
has exact synonym: two-cell stage
has narrow synonym: Cleavage:2-cell
has narrow synonym: NF stage 2 (2-cell)
has OBO namespace: uberon
id: UBERON:0007232

4 cell stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000050
  some values from: cleavage stage
subclass of: Restriction
  on property: RO_0002087
  some values from: 2 cell stage
has db xref: XAO:1000013
has db xref: XtroDO:0000007
has db xref: ZFS:0000003
has exact synonym: 4-cell stage
has exact synonym: four-cell stage
has narrow synonym: Cleavage:4-cell
has narrow synonym: NF stage 3 (4-cell)
has OBO namespace: uberon
id: UBERON:0007233

8 cell stage
type: Class
subclass of: embryo stage part
subclass of: Restriction
  on property: BFO_0000050
  some values from: cleavage stage
subclass of: Restriction
  on property: RO_0002087
  some values from: 4 cell stage
has db xref: XAO:1000014
has db xref: XtroDO:0000008
has db xref: ZFS:0000004
has exact synonym: 8-cell stage
has exact synonym: eight-cell stage
has narrow synonym: Cleavage:8-cell
has narrow synonym: NF stage 4 (8-cell)
has OBO namespace: uberon
id: UBERON:0007236

embryonic head
type: Class
equivalent class: Class
  intersection of: FMA 7154
  intersection of: Restriction
    on property: BFO_0000050
    some values from: FMA_69068
subclass of: FMA_69067
subclass of: FMA 7154
IAO_0000115: A head that is part of a embryo.
has db xref: CALOHA:TS-0246
has db xref: FBbt:00000155
has db xref: FMA:293011
has OBO namespace: uberon
id: UBERON:0008816
in subset: non informative

umbilical blood vessel
type: Class
equivalent class: Class
  intersection of: FMA_63183
  intersection of: Restriction
    on property: BFO_0000051
    some values from: Restriction
      on property: BFO_0000050
      some values from: FMA_85541
subclass of: FMA_63183
subclass of: Restriction
  on property: RO_0001025
  some values from: mesenchyme of umbilical cord
IAO_0000115: One of the three blood vessels, usually one large umbilical vein and two small umbilical arteries, buried within Wharton's jelly, that transport blood to and from the placenta, where exchange between the mother and fetus takes place; the umbilical vein carries oxygenated, nutrient-rich blood from the placenta to the fetus, and the umbilical arteries carry deoxygenated, nutrient-depleted blood from the fetus to the placenta.
has db xref: http://www.snomedbrowser.com/Codes/Details/408728001
has db xref: EMAPA:36493
has exact synonym: allantoic vessel
has exact synonym: umbilical cord blood vessel
has exact synonym: umbilical vessel
has OBO namespace: uberon
has related synonym: umbilical cord blood vessels
has related synonym: umbilical vasculature
id: UBERON:0010260
in subset: pheno slim

perinatal stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000051
  some values from: Restriction
    on property: BFO_0000050
    some values from: embryo stage
subclass of: Restriction
  on property: BFO_0000051
  some values from: Restriction
    on property: BFO_0000050
    some values from: post-embryonic stage
IAO_0000115: The period spanning the range immediately before and after birth
taxon_notes: In birds, the paranatal stage starts when the beak penetrates into the air pocket (air cell) between the inner and outer shell membranes
has narrow synonym: paranatal stage
has OBO namespace: uberon
id: UBERON:0012101

umbilical cord blood
type: Class
equivalent class: Class
  intersection of: FMA 9670
  intersection of: Restriction
    on property: RO_0001025
    some values from: FMA_18820
subclass of: FMA 9670
subclass of: Restriction
  on property: BFO_0000050
  some values from: FMA_63919
IAO_0000115: blood that remains in the placenta and in the attached umbilical cord after childbirth[WP].
has db xref: Cord blood
has db xref: BTO:0004053
has db xref: CALOHA:TS-1079
has db xref: EFO:0001942
has db xref: MESH:D005312
has OBO namespace: uberon
has related synonym: cord blood
has related synonym: fetal blood
has related synonym: umbilical cord blood
id: UBERON:0012168
in subset: efo slim
comment: Cord blood is collected because it contains stem cells, which can be used to treat hematopoietic and genetic disorders.[WP]

prime adult stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: post-juvenile adult stage
IAO_0000115: A life cycle stage that starts at completion of development and growth of the sexually mature adult animal, and ends before senescence.
contributor: ANiknejad
contributor: cmungall
contributor: fbastian
has OBO namespace: uberon
has related synonym: adulthood stage
id: UBERON:0018241

nursing stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: post-embryonic stage
subclass of: Restriction
  on property: BFO_0000051
  some values from: neonate stage
IAO_0000115: A mammalian developmental stage that covers the period from birth until weaning.
has exact synonym: suckling stage
has OBO namespace: uberon
id: UBERON:0018685

juvenile stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: sexually immature stage
IAO_0000115: The stage of being no more dependent of the nest and/or from caregivers for subsistence while having not reach sexual maturity.
contributor: ANiknejad
contributor: cmungall
has OBO namespace: uberon
id: UBERON:0034919

infant stage
type: Class
subclass of: life cycle stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: nursing stage
subclass of: Restriction
  on property: RO_0002087
  some values from: neonate stage
IAO_0000115: Nursing stage that follows the neonate stage in mammals and ends at weaning.
contributor: ANiknejad
contributor: cmungall
has OBO namespace: uberon
id: UBERON:0034920

life cycle temporal boundary
type: Class
subclass of: BFO_0000035
IAO_0000115: A temporal boundary connecting two life cycle stages that follow in immediate succession. A temporal boundary is an abstract, instantaneous entity.
has OBO namespace: uberon
id: UBERON:0035943
in subset: upper level

life-death temporal boundary
type: Class
equivalent class: Class
  intersection of: life cycle temporal boundary
  intersection of: Restriction
    on property: RO_0002229
    some values from: life cycle
subclass of: life cycle temporal boundary
subclass of: Restriction
  on property: BFO_0000050
  some values from: life cycle
IAO_0000115: A life cycle temporal boundary that marks the end of the life cycle of the organism.
has exact synonym: end of life cycle
has exact synonym: moment of death
has exact synonym: time of death
has OBO namespace: uberon
has related synonym: death
has related synonym: end of life
id: UBERON:0035944

start of life cycle
type: Class
equivalent class: Class
  intersection of: life cycle temporal boundary
  intersection of: Restriction
    on property: RO_0002223
    some values from: life cycle
subclass of: life cycle temporal boundary
subclass of: Restriction
  on property: BFO_0000050
  some values from: life cycle
IAO_0000115: A life cycle temporal boundary that marks the start of the life cycle of the organism.
has OBO namespace: uberon
id: UBERON:0035945

start of neonate stage
type: Class
equivalent class: Class
  intersection of: life cycle temporal boundary
  intersection of: Restriction
    on property: RO_0002223
    some values from: neonate stage
subclass of: life cycle temporal boundary
subclass of: Restriction
  on property: BFO_0000050
  some values from: neonate stage
IAO_0000115: A life cycle temporal boundary that marks the start of the neonate stage of the organism.
has exact synonym: moment of birth
has exact synonym: time of birth
has OBO namespace: uberon
has related synonym: birth
id: UBERON:0035946

shorthand