plant_trait_ontology 1.2 cooperl definition term replaced by Terms_used_for_leek Terms_used_for_squash Terms_used_for_soybean Term_used_for_barley Terms_used_for_sugarcane Terms_used_for_the_Solanaceae Terms_used_for_wheat Terms_used_for_maize_or_corn subset_property has_alternative_id has_broad_synonym database_cross_reference has_exact_synonym has_narrow_synonym has_obo_format_version has_obo_namespace has_related_synonym in_subset shorthand BFO:0000050 plant_trait_ontology part_of part_of part of BFO:0000051 plant_trait_ontology has_part has_part has part BFO:0000066 plant_trait_ontology occurs_in occurs_in occurs in RO:0000052 plant_trait_ontology inheres_in inheres_in inheres in plant_trait_ontology evaluation_location evaluation location plant_trait_ontology from_country from country plant_trait_ontology has_absolute_phenotype has absolute phenotype plant_trait_ontology has_dividend_entity has dividend entity plant_trait_ontology has_dividend_quality has dividend quality plant_trait_ontology has_divisor_entity has divisor entity plant_trait_ontology has_divisor_quality has divisor quality plant_trait_ontology has_phenotype_score has phenotype score plant_trait_ontology has_phenotype_variable has phenotype variable plant_trait_ontology has_ratio_quality has ratio quality plant_trait_ontology has_relative_phenotype has relative phenotype plant_trait_ontology relative_to relative to Sensitivity to the carbon content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in various metabolic processes. plant_trait_ontology CBSN (related) carbon deficiency (related) TO:0000001 carbon sensitivity Sensitivity to the carbon content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in various metabolic processes. Gramene:pankaj_jaiswal OBSOLETE. An epigenetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual but have arisen as a result of mechanisms regulating the expression of the genes rather than differences in the gene sequence. plant_trait_ontology TO:0000002 epigenetic trait true OBSOLETE. An epigenetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual but have arisen as a result of mechanisms regulating the expression of the genes rather than differences in the gene sequence. Gramene:pankaj_jaiswal ISBN:0198506732 Plant sensitivity to soils with alkali conditions (pH>7). plant_trait_ontology AlkS (related) alkali sensitivity (related) TO:0000003 Observed by general growth conditions in relation to standard resistant and susceptible checks. Since some soil problems are very heterogeneous in the field, several replications may be needed to obtain precise reading. Leaf is counted as discolored or dead if more than half of its area is discolored or dead. alkali soil sensitivity Plant sensitivity to soils with alkali conditions (pH>7). IRRI:SES TO:moorel Trait of a plant in which the action of the cytotoxic gene used to introduce male sterility is suppressed by the application of a chemical to the plant. Reversion of the sterility allows the RMS parent to be self-fertilized, a step that overcomes the need to remove fertile sib plants prior to making the hybrid cross. plant_trait_ontology RMS (related) TO:0000004 reversible male sterility Trait of a plant in which the action of the cytotoxic gene used to introduce male sterility is suppressed by the application of a chemical to the plant. Reversion of the sterility allows the RMS parent to be self-fertilized, a step that overcomes the need to remove fertile sib plants prior to making the hybrid cross. PMID:10645437 true Sensitivity to the calcium content in the growth medium. Plays an important role in cell wall synthesis and enzyme activities. plant_trait_ontology CALSN (related) calcium deficiency (related) TO:0000006 calcium sensitivity Sensitivity to the calcium content in the growth medium. Plays an important role in cell wall synthesis and enzyme activities. Gramene:pankaj_jaiswal Response by the plant in terms of sensitivity to sulfur content in the growth medium. It is important for synthesis of some amino acid residues. plant_trait_ontology SFSN (related) sulfur deficiency (related) TO:0000007 sulfur sensitivity Response by the plant in terms of sensitivity to sulfur content in the growth medium. It is important for synthesis of some amino acid residues. Gramene:pankaj_jaiswal Sensitivity to the potassium ion content in the growth medium. It plays an important role in controlling water by osmosis and also in the metal ion homeostasis. plant_trait_ontology KSN (related) potassium deficiency (related) TO:0000008 potassium sensitivity Sensitivity to the potassium ion content in the growth medium. It plays an important role in controlling water by osmosis and also in the metal ion homeostasis. Gramene:pankaj_jaiswal Male sterility affected by photoperiod. plant_trait_ontology PGMS (related) PPDSNGMS (related) photoperiod sensitive genic male sterility (related) TO:0000009 genic male sterility-photoperiod sensitive Male sterility affected by photoperiod. Gramene:pankaj_jaiswal IRRI:SES Sensitivity to the magnesium content in the growth medium. It is important for chlorophyll biosynthesis and metal ion homeostasis. plant_trait_ontology MGSN (related) magnesium deficiency (related) TO:0000010 magnesium sensitivity Sensitivity to the magnesium content in the growth medium. It is important for chlorophyll biosynthesis and metal ion homeostasis. Gramene:pankaj_jaiswal Sensitivity to the nitrogen content in the growth medium. It is important for protein synthesis, chlorophyll etc. plant_trait_ontology NISN (related) nitrogen deficiency (related) TO:0000011 nitrogen sensitivity Sensitivity to the nitrogen content in the growth medium. It is important for protein synthesis, chlorophyll etc. Gramene:pankaj_jaiswal Sensitivity to the molecular hydrogen or hydrogen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in the energy metabolism, osmolarity, etc. plant_trait_ontology hydrogen ion sensitivity (related) molecular hydrogen sensitivity (related) TO:0000012 hydrogen sensitivity Sensitivity to the molecular hydrogen or hydrogen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in the energy metabolism, osmolarity, etc. Gramene:pankaj_jaiswal An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a mycoplasma-like pathogen infection as compared to the susceptible and/or the reference plants of the same species. plant_trait_ontology MLO (related) MLORS (related) TO:0000013 The factors needed for successful test are the presence of sources and vectors, inoculation at the susceptible growth stage of the test plants and favorable environmental conditions. resistance to disease by mycoplasma-like organism An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a mycoplasma-like pathogen infection as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal IRRI:SES Average weight of the panicle from the plants or tillers in a given study. plant_trait_ontology PNWT (related) TO:0000014 panicle weight Average weight of the panicle from the plants or tillers in a given study. Gramene:pankaj_jaiswal Sensitivity to the molecular oxygen or reactive oxygen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, aminoacids and peptides and plays a role in the energy metabolism. plant_trait_ontology oxygen deficiency (related) TO:0000015 oxygen sensitivity Sensitivity to the molecular oxygen or reactive oxygen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, aminoacids and peptides and plays a role in the energy metabolism. Gramene:pankaj_jaiswal Sensitivity to the cobalt content in the growth medium. plant_trait_ontology COSN (related) TO:0000016 cobalt sensitivity Sensitivity to the cobalt content in the growth medium. Gramene:pankaj_jaiswal A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein. TO_GIT:54 plant_trait_ontology plant architecture trait (related) plant structure trait (related) TO:0000017 Includes traits of plant structures (PO:0009011) such as plant cell (PO:0009002), plant organ (PO:0009008), portion of plant tissue (PO:0009007), vascular system (PO:0000034), whole plant (PO:0000003) and seed (PO:0009010), as well as those of plant anatomical spaces (PO:0025117) and portions of plant substance (PO:0025161). plant morphology trait A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein. GO:0005575 Gramene:pankaj_jaiswal PO:0025131 TO:cooperl Sensitivity to the boron content in the growth medium. It plays an important role in cell division. plant_trait_ontology BOSN (related) boron deficiency (related) TO:0000018 boron sensitivity Sensitivity to the boron content in the growth medium. It plays an important role in cell division. Gramene:pankaj_jaiswal Average height measurements of 10 seedlings, in centimeters from the base of the shoot to the tip of the tallest leaf blade. plant_trait_ontology SH (related) TO:0000019 seedling height Average height measurements of 10 seedlings, in centimeters from the base of the shoot to the tip of the tallest leaf blade. IRRI:SES plant_trait_ontology BSDVRS (related) TO:0000020 black streak dwarf virus resistance Sensitivity to the copper ion content in the growth medium. Plays a role as cofactor in synthesis of some enzymes important in photosynthesis. plant_trait_ontology CUSN (related) TO:0000021 copper sensitivity Sensitivity to the copper ion content in the growth medium. Plays a role as cofactor in synthesis of some enzymes important in photosynthesis. Gramene:pankaj_jaiswal Causal agent: Oebalus pugnax. plant_trait_ontology SBUGRS (related) TO:0000022 stink bug resistance Causal agent: Oebalus pugnax. Gramene:pankaj_jaiswal Causal agent: species of Sarocladium, Bipolaris, Alternaria, Gerlachia, Fusarium, Phoma, Curvularia, Trichoconiella and Psaudomonas etc. Symptoms: darkening of glumes of spikelets, brown color to black including rotten glumes caused by one or more pathogens. Intensity ranges from sporadic discoloration to discoloration of the whole glume. Severity of grain discoloration can be estimated by counting of grains with more than 25% of glume surface affected. plant_trait_ontology Gd (related) grain discoloration (related) TO:0000023 fungal infection related grain discoloration Causal agent: species of Sarocladium, Bipolaris, Alternaria, Gerlachia, Fusarium, Phoma, Curvularia, Trichoconiella and Psaudomonas etc. Symptoms: darkening of glumes of spikelets, brown color to black including rotten glumes caused by one or more pathogens. Intensity ranges from sporadic discoloration to discoloration of the whole glume. Severity of grain discoloration can be estimated by counting of grains with more than 25% of glume surface affected. Gramene:pankaj_jaiswal IRRI:SES A ligule morphology trait (TO:0002748) which is a length of a ligule measured in millimeters from the base of the leaf collar to the tip of the ligule (PO:0020105). PATO:0000122 plant_trait_ontology LIGLG (related) LgL (related) TO:0000024 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. ligule length A ligule morphology trait (TO:0002748) which is a length of a ligule measured in millimeters from the base of the leaf collar to the tip of the ligule (PO:0020105). IRRI:SES PO:0020105 TO:cooperl Important for nitrate fixation. plant_trait_ontology TO:0000025 molybdenum sensitivity Important for nitrate fixation. Gramene:pankaj_jaiswal Abortion at tri-nucleate stage of microspore development. plant_trait_ontology TNUABR (related) TO:0000026 An example is CMS-boro in rice. aborted tri-nucleate stage Abortion at tri-nucleate stage of microspore development. Gramene:pankaj_jaiswal IRRI:SES Actual count of the total number of tillers after full heading, Specify if per plant, hill or area. plant_trait_ontology CmN (related) TO:0000027 culm number Actual count of the total number of tillers after full heading, Specify if per plant, hill or area. IRRI:SES Number of unfilled florets in a grass inflorescence. plant_trait_ontology UNFILGRNB (related) unfilled florets per panicle (related) unfilled grain (related) TO:0000028 unfilled grain number Number of unfilled florets in a grass inflorescence. Gramene:pankaj_jaiswal Sensitivity to the chlorine content in the growth medium. Chloride helps regulate the correct pH (acid/alkaline) balance. This is a major electrolyte in the living cell besides sodium and potassium. It is available to the cell mainly in the form of NaCl and KCl salts. plant_trait_ontology CHLORSN (related) TO:0000029 chlorine sensitivity Sensitivity to the chlorine content in the growth medium. Chloride helps regulate the correct pH (acid/alkaline) balance. This is a major electrolyte in the living cell besides sodium and potassium. It is available to the cell mainly in the form of NaCl and KCl salts. Gramene:pankaj_jaiswal A weed damage response (TO:0000347) trait which is the response of a plant to weed competition from sedge weeds. plant_trait_ontology TO:0000030 Sedges are perennial plants which resemble grasses, and commonly grow in shallow water or moist soils, such as rice production fields. Sedges may be distinguished from grasses by their stem cross-section (solid, triangular) and leaf shape (long, thin-textured, narrow and flat). Common sedge weeds in rice fields include Smallflower Umbrella Sedge (Cyperus difformis), Ricefield Bulrush (Scirpus mucronatus), and River Bulrush (Scirpus fluviatilis). sedge weed response A weed damage response (TO:0000347) trait which is the response of a plant to weed competition from sedge weeds. Gramene:pankaj_jaiswal ISBN:9712200299 TO:cooperl http://ipm.ucanr.edu/PMG/WEEDS/sedge_gallery.html plant_trait_ontology TO:0000031 silicon sensitivity plant_trait_ontology TO:0000032 selenium sensitivity plant_trait_ontology TO:0000033 iodine sensitivity Sensitivity to the chromium content in the growth medium. plant_trait_ontology CHRSN (related) TO:0000034 chromium sensitivity Sensitivity to the chromium content in the growth medium. Gramene:pankaj_jaiswal plant_trait_ontology TO:0000035 incompatibility trait plant_trait_ontology HYBIC (related) TO:0000036 hybrid incompatibility OBSOLETE. Determines the extent of male sterility of a male sterile line. Can be determined by either pollen sterility or spikelet fertility plant_trait_ontology degree of male sterility of male sterile lines (related) male sterility measure (related) TO:0000037 male sterility extent true OBSOLETE. Determines the extent of male sterility of a male sterile line. Can be determined by either pollen sterility or spikelet fertility Gramene:pankaj_jaiswal IRRI:SES plant_trait_ontology TO:0000038 fluorine sensitivity OBSOLETE. Defines the components that determine the over all yield from a plant plant_trait_ontology TO:0000039 yield component true OBSOLETE. Defines the components that determine the over all yield from a plant Gramene:pankaj_jaiswal A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip. plant_trait_ontology PNLG (related) PnL (related) TO:0000040 Evaluated at growth stage:8 in rice. panicle length A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip. IRRI:SES A grain length (TO:0000734) monitored after dehulling but before polishing. The grain should contain pericarp (PO:0009084). PATO:0000122 plant_trait_ontology BRWLG (related) Len (related) TO:0000041 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. brown rice length A grain length (TO:0000734) monitored after dehulling but before polishing. The grain should contain pericarp (PO:0009084). IRRI:SES PO:0009084 TO:moorel plant_trait_ontology F1HYBIC (related) TO:0000042 f1-hybrid incompatibility A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025). TO_GIT:58 plant_trait_ontology TO:0000043 root morphology trait A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025). Gramene:pankaj_jaiswal PO:0025025 TO:cooperl Trait is monitored by counting number of flowers or florets that have completed anthesis on a given day and showing exserted stigma. Trait expressed as percent stigma exsertion. plant_trait_ontology STIEX (related) stigma exsertion of male sterile lines (related) TO:0000044 Scale, (%), Stigma exsertion; 1- Above 70, Well exserted; 3- 41-70, Moderately well exserted; 5- 21-40, Just exserted; 7- 11-20, Partly exserted; 9- 0-10, Enclosed. Evaluated at growth stage:6 and 7 in rice. stigma exsertion Trait is monitored by counting number of flowers or florets that have completed anthesis on a given day and showing exserted stigma. Trait expressed as percent stigma exsertion. Gramene:pankaj_jaiswal IRRI:SES Causal agent: Balanasia oryzae-sativae (Ephelis oryzae). Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods. plant_trait_ontology UDb (related) TO:0000045 udbatta disease resistance Causal agent: Balanasia oryzae-sativae (Ephelis oryzae). Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods. Gramene:pankaj_jaiswal IRRI:SES plant_trait_ontology F2GST (related) TO:0000046 f2-generation sterility plant_trait_ontology TO:0000047 sporophytic incompatibility Causal agent: Tilletia barclayana. Symptoms: infected grains show minute black pustules or streaks bursting through the glumes. In severe infection, the rupturing glumes produce short beak-like or spur-like outgrowths. plant_trait_ontology KSRS (related) KSm (related) TO:0000048 kernel smut disease resistance Causal agent: Tilletia barclayana. Symptoms: infected grains show minute black pustules or streaks bursting through the glumes. In severe infection, the rupturing glumes produce short beak-like or spur-like outgrowths. Gramene:pankaj_jaiswal plant_trait_ontology GPHIC (related) TO:0000049 gametophytic incompatibility An inflorescence morphology trait (TO:0000373) which is the extent of branching. (PO:0009049). TO:0000263 TO_GIT:96 plant_trait_ontology panicle branching (related) TO:0000050 Branching usually determines the shape and compactness of the inflorescence inflorescence branching An inflorescence morphology trait (TO:0000373) which is the extent of branching. (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel A stem morphology trait (TO:0000361) which is the strength of a stem (PO:0009047). PATO:0001230 plant_trait_ontology CULMSTR (related) Cs (related) STEMSTR (related) culm strength (related) TO:0000051 Refer to strength (PATO:0001230): A quality inhering in a bearer by virtue of the bearer's power or force. stem strength A stem morphology trait (TO:0000361) which is the strength of a stem (PO:0009047). Gramene:pankaj_jaiswal IRRI:SES PO:0009047 TO:moorel An inflorescence morphology trait (TO:0000373) which is the extent of primary branching that usually sets the tone for shape and compactness of the inflorescence (PO:0009049) (rice panicle). plant_trait_ontology PBR (related) primary branching of panicle (related) TO:0000052 primary branching of inflorescence An inflorescence morphology trait (TO:0000373) which is the extent of primary branching that usually sets the tone for shape and compactness of the inflorescence (PO:0009049) (rice panicle). Gramene:pankaj_jaiswal PO:0009049 TO:moorel Observed under a microscope at magnification 10x10 after staining with 1% iodine potassium iodide (IKI) solution. Samples for pollen are collected from anthers and fixed in 70% alcohol. Two to three anthers are extracted from each floret and pollen grains are squeezed out into the IKI solution drop. At least three fields are used to count the sterile pollen grains; unstained withered, unstained spherical and partially stained round and fertile, from stained round pollen grains. Percentage sterility is calculated as = (unstained withered+unstained spherical+partially stained) x 100/total number of pollen grains in the field including the fertile. plant_trait_ontology TO:0000053 pollen sterility Observed under a microscope at magnification 10x10 after staining with 1% iodine potassium iodide (IKI) solution. Samples for pollen are collected from anthers and fixed in 70% alcohol. Two to three anthers are extracted from each floret and pollen grains are squeezed out into the IKI solution drop. At least three fields are used to count the sterile pollen grains; unstained withered, unstained spherical and partially stained round and fertile, from stained round pollen grains. Percentage sterility is calculated as = (unstained withered+unstained spherical+partially stained) x 100/total number of pollen grains in the field including the fertile. Gramene:pankaj_jaiswal IRRI:SES Response by the plant in terms of resistivity or sensitivity to the animals infesting them. plant_trait_ontology pest resistance (related) TO:0000054 animal damage resistance Response by the plant in terms of resistivity or sensitivity to the animals infesting them. Gramene:pankaj_jaiswal A leaf lamina morphology trait (TO:0000829) which is the extent of pubescence (presence of hairs) on a leaf lamina (PO:0020039). PATO:0001320 plant_trait_ontology LBP (related) LFLHR (related) LFLPUBES (related) leaf blade pubescence (related) TO:0000055 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. leaf lamina pubescence A leaf lamina morphology trait (TO:0000829) which is the extent of pubescence (presence of hairs) on a leaf lamina (PO:0020039). IRRI:SES A stem morphology trait (TO:0000361) which is the color of a stem (PO:0009047). PATO:0000014 plant_trait_ontology TO:0000056 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. stem color A stem morphology trait (TO:0000361) which is the color of a stem (PO:0009047). Gramene:pankaj_jaiswal PO:0009047 TO:moorel plant_trait_ontology TO:0000057 grain moisture A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant towards the applied herbicide. PECO:0007183 plant_trait_ontology herbicide tolerance (related) weedicide tolerance (related) TO:0000058 It is expected that the herbicide application must not affect the agronomic yield, if any. herbicide sensitivity A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant towards the applied herbicide. Gramene:pankaj_jaiswal TO:moorel Color of the stem node. plant_trait_ontology NDCL (related) TO:0000059 node color true true Color of the stem node. Gramene:pankaj_jaiswal Abortion at uni-nucleate stage of microspore development. plant_trait_ontology UNUABR (related) TO:0000060 An example is CMS-WA in rice. aborted uni-nucleate stage Abortion at uni-nucleate stage of microspore development. Gramene:pankaj_jaiswal IRRI:SES plant_trait_ontology brittle node (related) TO:0000061 node shattering plant_trait_ontology TO:0000062 phenol reaction plant_trait_ontology MIRP (related) disease mimic response (related) lesion mimic (related) TO:0000063 mimic response A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009). TO_GIT:140 plant_trait_ontology TO:0000064 plant embryo morphology trait A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009). PO:0009009 TO:moorel A root morphology trait (TO:0000043) which is the color of a root (PO:0009005). plant_trait_ontology RTCL (related) TO:0000065 root color A root morphology trait (TO:0000043) which is the color of a root (PO:0009005). Gramene:pankaj_jaiswal OBSOLETE. plant_trait_ontology TO:0000066 spot disease true Temperature sensitive male sterility, affected by environment. plant_trait_ontology TGMS (related) thermo sensitive genic male sterility (related) TO:0000067 genic male sterility-thermo sensitive Temperature sensitive male sterility, affected by environment. Gramene:pankaj_jaiswal IRRI:SES Measure of percentage of plants that lodged. plant_trait_ontology LOI (related) Lg (related) TO:0000068 lodging incidence Measure of percentage of plants that lodged. IRRI:SES A leaf color (TO:0000326) trait where the leaf (PO:0009025) has areas of green and non-green tissue. plant_trait_ontology albino leaf striping (related) leaf stripes (related) TO:0000069 variegated leaf A leaf color (TO:0000326) trait where the leaf (PO:0009025) has areas of green and non-green tissue. TO:cooperl Variegated leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue. plant_trait_ontology VLFNEC (related) ragged leaf (related) TO:0000070 In maize this trait is observed for chlorotic tissue between veins or older leaves, causing holes and torn appearance. variegated leaf necrosis Variegated leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue. Gramene:pankaj_jaiswal The anthocyanin content in a plant or plant part. plant_trait_ontology ANTHCN (related) TO:0000071 Anthocyanin is the red to purple pigments composed of soluble glycosides of anthocyanidins, present in leaves and floral tissue. Usually the pigment is produced under stress conditions. Amounts of anthocyanin produced depend on stored sugar and sunlight. The more stored sugar in the leaf and brighter the autumn days, the more intense red. Anthocyanin production also increases as phosphates move out of the leaves; the lack of phosphates in young leaves can also lead to the production of anthocyanin. anthocyanin content The anthocyanin content in a plant or plant part. ISBN:198506732 An awn morphology trait (TO:0002718) which is the length of awn (PO:0025349). PATO:0000122 plant_trait_ontology AWNLG (related) An (related) awning (related) TO:0000072 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. awn length An awn morphology trait (TO:0002718) which is the length of awn (PO:0025349). IRRI:SES PO:0025349 TO:moorel Sensitivity to the manganese content in the growth medium. It is important for activation of some enzymes and role in metal ion homeostasis. plant_trait_ontology MNSN (related) TO:0000073 manganese sensitivity Sensitivity to the manganese content in the growth medium. It is important for activation of some enzymes and role in metal ion homeostasis. Gramene:pankaj_jaiswal Causal agent: Magnaporthe grisea. TO_GIT:69 blast disease resistance trait (exact) blast disease susceptibility (narrow) plant_trait_ontology TO:0000074 blast disease resistance Causal agent: Magnaporthe grisea. Gramene:pankaj_jaiswal Response shown by the plant in terms of sensitivity to light stress (quality and quantity of light). plant_trait_ontology TO:0000075 light sensitivity Response shown by the plant in terms of sensitivity to light stress (quality and quantity of light). Gramene:pankaj_jaiswal OBSOLETE. The instances define various distinguishing trait features associated with inflorescence and its instances. plant_trait_ontology TO:0000076 inflorescence feature true OBSOLETE. The instances define various distinguishing trait features associated with inflorescence and its instances. Gramene:pankaj_jaiswal A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006). jaiswalp TO_GIT:57 plant_trait_ontology TO:0000077 Does not include traits of fruit, parts of fruit and adventitious roots which are borne on the shoot. shoot system morphology trait A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006). Gramene:pankaj_jaiswal PO:0009006 TO:cooperl The average dry weight of the root determined in a study. plant_trait_ontology RTDWT (related) rdw (related) rdw/t (related) root dry weight per tiller (related) total root dry weight (related) TO:0000078 root dry weight The average dry weight of the root determined in a study. Gramene:jcl Gramene:pankaj_jaiswal A bract morphology trait (TO:0000815) which is a quality of a flower bract (PO:0009034). cooperl TO_GIT:390 plant_trait_ontology TO:0000079 flower bract morphology trait A bract morphology trait (TO:0000815) which is a quality of a flower bract (PO:0009034). Gramene:pankaj_jaiswal PO:0009034 TO:cooperl Sensitivity response shown by the plant grown in either the excess or deficient amount of the micronutrient in the growth medium (soil). plant_trait_ontology micronutrient deficiency (related) TO:0000080 micronutrient sensitivity Sensitivity response shown by the plant grown in either the excess or deficient amount of the micronutrient in the growth medium (soil). Gramene:pankaj_jaiswal The average dry weight of the root, (for the root part 30cm below the soil surface) determined per tiller in a green house study. DRTDWT (exact) deep root dry weight per tiller (exact) deep root weight (exact) drw (exact) drw/t (exact) plant_trait_ontology TO:0000081 deep root dry weight The average dry weight of the root, (for the root part 30cm below the soil surface) determined per tiller in a green house study. Gramene:jcl Gramene:pankaj_jaiswal Causal agent: Recilia dorsalis (Motschulsky). plant_trait_ontology ZLFHRS (related) TO:0000082 zigzag leafhopper resistance Causal agent: Recilia dorsalis (Motschulsky). Gramene:pankaj_jaiswal Its the total number of roots penetrating the hard pans of the soil or the number of roots penetrated through the wax-petrolatum layer measured at 50 days after sowing (DAS). plant_trait_ontology PENRTNB (related) npr (related) number of penetrating roots (related) TO:0000083 penetrated root number Its the total number of roots penetrating the hard pans of the soil or the number of roots penetrated through the wax-petrolatum layer measured at 50 days after sowing (DAS). Gramene:jcl Gramene:pankaj_jaiswal A root system morphology trait (TO:0000985) which is the number of roots (PO:0009005) in a root system (PO:0025025). plant_trait_ontology RTNB (related) tnr (related) TO:0000084 root number A root system morphology trait (TO:0000985) which is the number of roots (PO:0009005) in a root system (PO:0025025). Gramene:jcl Gramene:pankaj_jaiswal PATO:0001555 TO:cooperl TO_GIT:357 A leaf morphology trait (TO:0000748) which is the rolling of a leaf preceding the leaf drying stage. plant_trait_ontology LFRL (related) wilting (related) TO:0000085 Leaf rolling is a feature observed in response to stresses like drought, water and temperature. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf rolling A leaf morphology trait (TO:0000748) which is the rolling of a leaf preceding the leaf drying stage. Gramene:jcl Gramene:pankaj_jaiswal TO:moorel Causal agent: Sarocladium oryzae. Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle; sometimes coalescing to prevent emergence of panicle. plant_trait_ontology SHROTRS (related) ShR (related) TO:0000086 sheath rot disease resistance Causal agent: Sarocladium oryzae. Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle; sometimes coalescing to prevent emergence of panicle. Gramene:pankaj_jaiswal IRRI:SES The aroma of the cooked/uncooked grains. scent (exact) plant_trait_ontology AROMA (related) Sct (related) odour (related) TO:0000087 It is often associated with the accumulation of the aromatic compound 2-acetyl-1-pyrroline. grain aroma trait The aroma of the cooked/uncooked grains. Gramene:pankaj_jaiswal IRRI:SES Causal agent: rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowish streaking of the leaves, delayed flowering or incomplete emergence of the panicle; in extreme cases, death of plants. plant_trait_ontology RYMV (related) RYMVRS (related) TO:0000088 rice yellow mottle virus resistance Causal agent: rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowish streaking of the leaves, delayed flowering or incomplete emergence of the panicle; in extreme cases, death of plants. Gramene:pankaj_jaiswal IRRI:SES A panicle inflorescence morphology trait (TO:0000847) which is the mode of branching, angle of primary branches, and spikelet density of a panicle inflorescence (PO:0030123). plant_trait_ontology PNTYPE (related) PnT (related) panicle attitude of branches (related) TO:0000089 panicle inflorescence type A panicle inflorescence morphology trait (TO:0000847) which is the mode of branching, angle of primary branches, and spikelet density of a panicle inflorescence (PO:0030123). IRRI:SES TO:moorel At 50 days after sowing (DAS), the thickness of roots penetrated through the wax-petrolatum layer is measured. Penetrated root thickness is measured on penetrated roots immediately below the wax layer. plant_trait_ontology PENRTTH (related) prt (related) TO:0000090 penetrated root thickness At 50 days after sowing (DAS), the thickness of roots penetrated through the wax-petrolatum layer is measured. Penetrated root thickness is measured on penetrated roots immediately below the wax layer. Gramene:jcl Gramene:pankaj_jaiswal OBSOLETE. plant_trait_ontology TO:0000091 leafhopper true The ratio of deep root length (for the roots found 30cm below the soil surface) and the shoot length determined in a study. plant_trait_ontology DRTSHRO (related) deep root length to shoot length ratio (related) deep root ratio (related) deep root/shoot ratio (related) dr/s (related) TO:0000092 deep root to shoot ratio The ratio of deep root length (for the roots found 30cm below the soil surface) and the shoot length determined in a study. Gramene:pankaj_jaiswal A drought related trait (TO:0000394) which is a measure of the pulling force required to uproot the plant. plant_trait_ontology RTPF (related) rpf (related) TO:0000093 Root pulling force is correlated with root weight (TO:0000279), root branching (TO:0000257) and thick root number. It is a measure of the drought resistance and is often evaluatred on rice seedlings. root pulling force A drought related trait (TO:0000394) which is a measure of the pulling force required to uproot the plant. TO:cooperl The thickness of the root present 2cm below the soil surface. plant_trait_ontology BARTTH (related) brt (related) TO:0000094 basal root thickness The thickness of the root present 2cm below the soil surface. Gramene:jcl Gramene:pankaj_jaiswal Sensitivity to the osmoticum in the growth medium. plant_trait_ontology OSRPSN (related) oa (related) TO:0000095 osmotic response sensitivity Sensitivity to the osmoticum in the growth medium. Gramene:pankaj_jaiswal Regeneration of the main stem and tillers after harvesting in a grass plant. plant_trait_ontology RAAB (related) TO:0000096 ratooning ability Regeneration of the main stem and tillers after harvesting in a grass plant. Gramene:jn Gramene:pankaj_jaiswal Amount of amylopectin present in the plant or plant part. plant_trait_ontology AMYPCTCN (related) TO:0000097 It is a polysaccharide present in starch. Amylopectin is a polymer of alpha(1,4)-linked glucose units, as is amylose (see amylose). Unlike amylose, amylopectin contains branches of 2430 glucose units connected to the main chain by an alpha(1,6) linkage. amylopectin content Amount of amylopectin present in the plant or plant part. ISBN:198506732 An endosperm morphology trait (TO:0000575) which is an opaque and hard endosperm (PO:0009089) with low or no amylose content (TO:0000196). TO_GIT:133 plant_trait_ontology opaque endosperm (related) waxy endosperm (related) TO:0000098 If the endosperm has high amount of amylose it is called as non-glutinous endosperm. This is also an endosperm quality trait (TO:0000587). glutinous endosperm An endosperm morphology trait (TO:0000575) which is an opaque and hard endosperm (PO:0009089) with low or no amylose content (TO:0000196). Gramene:pankaj_jaiswal PO:0009089 TO:moorel An endosperm morphology trait (TO:0000575) which is a wrinkled and glassy endosperm (PO:0009089) when dry. TO_GIT:133 plant_trait_ontology sugary kernel (related) TO:0000099 This is also an endosperm quality trait (TO:0000587). sugary endosperm An endosperm morphology trait (TO:0000575) which is a wrinkled and glassy endosperm (PO:0009089) when dry. Gramene:pankaj_jaiswal PO:0009089 TO:moorel An endosperm morphology trait (TO:0000575) which is a shrunken and opaque endosperm (PO:0009089). PATO:0000585 TO_GIT:133 plant_trait_ontology collapsed kernel (related) transluscent kernel (related) TO:0000100 This is also an endosperm quality trait (TO:0000587). Refers to shrunken PATO:0000585 A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). shrunken endosperm An endosperm morphology trait (TO:0000575) which is a shrunken and opaque endosperm (PO:0009089). Gramene:pankaj_jaiswal PO:0009089 TO:moorel A common sedge weed Monochoria vaginalis (monochoria), California arrowhead Sagittaria montevidensis, Gregg arrowhead Sagittaria longiloba, Ducksalad Heteranthera limosa, Echinodorus berteroi and E. cordifolius (Burhead), Ammannia spp (Redstems), Bacopa spp. (Water hyssops), Alisma plantago-aquatica (Common water plantain). Grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape. plant_trait_ontology TO:0000101 broad-leaved weed A common sedge weed Monochoria vaginalis (monochoria), California arrowhead Sagittaria montevidensis, Gregg arrowhead Sagittaria longiloba, Ducksalad Heteranthera limosa, Echinodorus berteroi and E. cordifolius (Burhead), Ammannia spp (Redstems), Bacopa spp. (Water hyssops), Alisma plantago-aquatica (Common water plantain). Grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape. Gramene:pankaj_jaiswal ISBN:9712200299 http://www.ipm.ucdavis.edu/PMG/r682700999.html Sensitivity to the phosphorus content in the growth medium. It is important in various biochemical pathways and storage of energy. plant_trait_ontology PDef (related) PHOSN (related) phosphorus deficiency (related) TO:0000102 phosphorus sensitivity Sensitivity to the phosphorus content in the growth medium. It is important in various biochemical pathways and storage of energy. IRRI:SES The sensitivity response shown by the plant growing in a stagnant water for a long period of time (not unlike deepwater presence during flash flooding of the fields). plant_trait_ontology DWSTR (related) deep water stress (related) TO:0000103 deepwater stress The sensitivity response shown by the plant growing in a stagnant water for a long period of time (not unlike deepwater presence during flash flooding of the fields). Gramene:pankaj_jaiswal An endosperm morphology trait (TO:0000575) which is an opaque and soft endosperm (PO:0009089). TO_GIT:133 plant_trait_ontology TO:0000104 This is also an endosperm quality trait (TO:0000587). floury endosperm An endosperm morphology trait (TO:0000575) which is an opaque and soft endosperm (PO:0009089). Gramene:pankaj_jaiswal PO:0009089 TO:moorel An endosperm morphology trait (TO:0000575) which is a glassy and tarnished endosperm (PO:0009089) with low amylose content (TO:0000196). TO_GIT:133 plant_trait_ontology glassy endosperm (related) TO:0000105 This is also an endosperm quality trait (TO:0000587). dull endosperm An endosperm morphology trait (TO:0000575) which is a glassy and tarnished endosperm (PO:0009089) with low amylose content (TO:0000196). Gramene:pankaj_jaiswal PO:0009089 TO:moorel Represents the different types of male sterility found in plants. plant_trait_ontology MS (related) TO:0000106 male sterility type Represents the different types of male sterility found in plants. Gramene:pankaj_jaiswal Assay for the amount of 13kDa seed storage protein present in the endosperm. plant_trait_ontology TO:0000107 endosperm storage protein-1 content Assay for the amount of 13kDa seed storage protein present in the endosperm. Gramene:pankaj_jaiswal A leaf growth and development trait (TO:0000655) which is the extent of leaf shattering based on the development of a leaf abscission zone (PO:0006501). GO:0060866 plant_trait_ontology LFSH (related) leaf abscission (related) TO:0000108 The leaf shattering trait is the occurence of the biological process of leaf abscission (GO:0060866): the controlled shedding of a leaf. leaf shattering A leaf growth and development trait (TO:0000655) which is the extent of leaf shattering based on the development of a leaf abscission zone (PO:0006501). Gramene:pankaj_jaiswal PO:0006501 TO:cooperl leaf abscission (related) GO:0060866 SOY:0001342 Assay for amount of 57kDa seed storage protein present in the endosperm. plant_trait_ontology TO:0000109 endosperm storage protein-2 content Assay for amount of 57kDa seed storage protein present in the endosperm. Gramene:pankaj_jaiswal Abortion of microspore development at uni-nucleate stage. plant_trait_ontology CMS-WA (related) WACMS (related) TO:0000110 wild abortive CMS Abortion of microspore development at uni-nucleate stage. Gramene:pankaj_jaiswal IRRI:SES The sterility induced by transgenes expressing cytotoxic component. plant_trait_ontology TO:0000111 genetically engineered male sterility The sterility induced by transgenes expressing cytotoxic component. Gramene:pankaj_jaiswal IRRI:SES An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a pathogen infection as compared to the susceptible and/or the reference plants of the same species. disease control (exact) disease resistance trait (exact) disease tolerance (exact) disease susceptibility (narrow) plant_trait_ontology TO:0000112 It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular pathogen variety causing the disease. disease resistance An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a pathogen infection as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal An embryo shape trait (TO:0000193) that is a large sized plant embryo (PO:0009009). plant_trait_ontology TO:0000113 giant embryo true true true An embryo shape trait (TO:0000193) that is a large sized plant embryo (PO:0009009). Gramene:pankaj_jaiswal PO:0009009 TO:moorel plant_trait_ontology TO:0000114 flooding related trait Determined as the dry mass of roots per unit soil volume at a given soil section. plant_trait_ontology RTMD (related) rmd (related) TO:0000115 root mass density Determined as the dry mass of roots per unit soil volume at a given soil section. Gramene:pankaj_jaiswal Root mass density 0-15 cm was calculated as the dry mass of roots per unit soil volume at 0-15 cm soil section. plant_trait_ontology rmd 0-15 (related) TO:0000116 root mass density 0-15 Root mass density 0-15 cm was calculated as the dry mass of roots per unit soil volume at 0-15 cm soil section. Gramene:jcl Gramene:pankaj_jaiswal Since there is no genetic resistance to rats, the damage can be quantified as it does not represent resistance. plant_trait_ontology RD (related) TO:0000117 rat damage resistance Since there is no genetic resistance to rats, the damage can be quantified as it does not represent resistance. Gramene:pankaj_jaiswal IRRI:SES Root mass density 15-30 cm was calculated as the dry mass of roots per unit soil volume at 15-30 cm soil section. plant_trait_ontology rmd 15-30 (related) TO:0000118 root mass density 15-30 Root mass density 15-30 cm was calculated as the dry mass of roots per unit soil volume at 15-30 cm soil section. Gramene:jcl Gramene:pankaj_jaiswal Root mass density 30-45 cm was calculated as the dry mass of roots per unit soil volume at 30-45 cm soil section. plant_trait_ontology rmd 30-45 (related) TO:0000119 root mass density 30-45 Root mass density 30-45 cm was calculated as the dry mass of roots per unit soil volume at 30-45 cm soil section. Gramene:jcl Gramene:pankaj_jaiswal Calculated as percent of root mass density over the total root mass density. Both parameters scored at the same depth. plant_trait_ontology PCENTRTMD (related) prmd (related) TO:0000120 percent root mass density Calculated as percent of root mass density over the total root mass density. Both parameters scored at the same depth. Gramene:pankaj_jaiswal Causal agent: the stem nematode Dictylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage; brown stains may develop on leaves and sheaths which later intensify to a dark brown color. A characteristic distortion consisting of twisting and withering of young leaves. A distortion of panicle which either remains enclosed with in a swollen sheath, partially emerge but are twisted and with unfilled grains or emerge completely but with unfilled grains and resembling a whitehead. plant_trait_ontology U (related) TO:0000121 Evaluated at growth stage:6-7 in rice. ufra damage Causal agent: the stem nematode Dictylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage; brown stains may develop on leaves and sheaths which later intensify to a dark brown color. A characteristic distortion consisting of twisting and withering of young leaves. A distortion of panicle which either remains enclosed with in a swollen sheath, partially emerge but are twisted and with unfilled grains or emerge completely but with unfilled grains and resembling a whitehead. Gramene:pankaj_jaiswal IRRI:SES Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 0-15cm depth. plant_trait_ontology prmd 0-15 (related) TO:0000122 percent root mass density 0-15 Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 0-15cm depth. Gramene:jcl Gramene:pankaj_jaiswal Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 15-30cm depth. plant_trait_ontology prmd 15-30 (related) TO:0000123 percent root mass density 15-30 Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 15-30cm depth. Gramene:jcl Gramene:pankaj_jaiswal A flag leaf morphology trait (TO:0000832) which is an angle of the flag leaf (PO:0020103) measured near the collar, as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. plant_trait_ontology FLFAG (related) TO:0000124 flag leaf angle A flag leaf morphology trait (TO:0000832) which is an angle of the flag leaf (PO:0020103) measured near the collar, as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. IRRI:SES PO:0020103 TO:cooperl TO:moorel Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 30-45cm depth. plant_trait_ontology prmd 30-45 (related) TO:0000125 percent root mass density 30-45 Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 30-45cm depth. Gramene:jcl Gramene:pankaj_jaiswal Causal agent: rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots. plant_trait_ontology RGSV2 (related) RGSV2RS (related) TO:0000126 rice grassy stunt virus-2 resistance Causal agent: rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots. Gramene:pankaj_jaiswal Causal agent: rice grassy stunt virus 1 (RGSV1). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. plant_trait_ontology RGSV1 (related) RGSV1RS (related) TO:0000127 rice grassy stunt virus-1 resistance Causal agent: rice grassy stunt virus 1 (RGSV1). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. Gramene:pankaj_jaiswal Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage. plant_trait_ontology HI (related) HVID (related) TO:0000128 harvest index Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage. Gramene:jcl Gramene:pankaj_jaiswal Causal agent: Ustilaginoidea virens. Symptoms: infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls. plant_trait_ontology FSRS (related) FSm (related) TO:0000129 false smut disease resistance Causal agent: Ustilaginoidea virens. Symptoms: infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls. Gramene:pankaj_jaiswal IRRI:SES Sensitivity to the far red light content in the growth environment. plant_trait_ontology FRLTSN (related) Pfr light sensitivity (related) TO:0000130 far red light sensitivity Sensitivity to the far red light content in the growth environment. Gramene:pankaj_jaiswal Water potential of a leaf. plant_trait_ontology LFWP (related) lwp (related) TO:0000131 leaf water potential Water potential of a leaf. Gramene:pankaj_jaiswal Actual measurements in millimeters from the outer diameter of the stem at the basal portion of the main stem. plant_trait_ontology BAINDIA (related) DBI (related) TO:0000132 basal internode diameter Actual measurements in millimeters from the outer diameter of the stem at the basal portion of the main stem. IRRI:SES OBSOLETE: A subjective assessment of the plant in similar site and growing conditions (often unfavorable conditions) based upon a specific facet of growth. jaiswalp plant_trait_ontology TO:0000133 stature or vigor trait true OBSOLETE: A subjective assessment of the plant in similar site and growing conditions (often unfavorable conditions) based upon a specific facet of growth. Gramene:pankaj_jaiswal Is an indirect measure of gelatinization temperature. Observed by placing six milled-rice kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30degC temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high. plant_trait_ontology ALKDIG (related) AlkD (related) TO:0000134 alkali digestion Is an indirect measure of gelatinization temperature. Observed by placing six milled-rice kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30degC temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high. Gramene:pankaj_jaiswal IRRI:SES A leaf morphology trait (TO:0000748) which is the length of a leaf (PO:0025034). MaizeGDB_QTL:61715 PATO:0000122 TO_GIT:247 plant_trait_ontology LFLG (related) LL (related) lfln (related) TO:0000135 Actual measurements, in centimeters of the leaf. Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf length A leaf morphology trait (TO:0000748) which is the length of a leaf (PO:0025034). IRRI:SES PO:0025034 TO:cooperl TO:moorel lfln (related) MaizeGDB_QTL:61715 Leaf relative water content is determined at midday (12.00 noon). plant_trait_ontology RELWCN (related) leaf relative water content (related) rec (related) TO:0000136 leaf relative water content Leaf relative water content is determined at midday (12.00 noon). Gramene:jcl Gramene:pankaj_jaiswal Number of days required for the inflorescence (head/cob/panicle) to emerge from the flag leaf of a plant or a group of plants in a study. plant_trait_ontology DTHD (related) heading date (related) TO:0000137 Often determined when the 50% length of the inflorescence has emerged as compared to its full length. Number of days is calculated from either the day of sowing of seeds or from the day of transplanting the seedlings (in case of rice) depending on type of study. days to heading Number of days required for the inflorescence (head/cob/panicle) to emerge from the flag leaf of a plant or a group of plants in a study. Gramene:pankaj_jaiswal Total protein content of the brown rice. plant_trait_ontology BRWRPROT (related) BrP (related) Prt (related) brown rice protein content (related) TO:0000138 brown rice protein Total protein content of the brown rice. IRRI:SES true A cardinal organ part morphology trait (TO:0000754) which is the color of a lemma apiculus (PO:0025616). plant_trait_ontology APICL (related) ApC (related) TO:0000140 lemma apiculus color A cardinal organ part morphology trait (TO:0000754) which is the color of a lemma apiculus (PO:0025616). IRRI:SES An awn morphology trait (TO:0002718) which is a color of the awn (PO:0025349). PATO:0000014 plant_trait_ontology AWNCL (related) TO:0000141 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. awn color An awn morphology trait (TO:0002718) which is a color of the awn (PO:0025349). IRRI:SES PO:0025349 TO:moorel An inflorescence branching (TO:0000050) trait which is the extent of secondary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle). plant_trait_ontology PnBr (related) SBR (related) panicle secondary branching (related) secondary branching of panicle (related) TO:0000142 secondary branching of inflorescence An inflorescence branching (TO:0000050) trait which is the extent of secondary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle). Gramene:pankaj_jaiswal IRRI:SES PO:0009049 TO:moorel Relative yield was calculated as the ratio of biomass in stress to that of control. plant_trait_ontology RB (related) RELBIOM (related) relative biomass yield (related) TO:0000143 relative biomass Relative yield was calculated as the ratio of biomass in stress to that of control. Gramene:jcl Gramene:pankaj_jaiswal A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran. plant_trait_ontology MR (related) milled rice ratio (related) TO:0000144 Milling is part of rice processing where the caryopsis hull (PO:0006000) and bran is removed. Milled rice consists of the broken kernels as well as the head rice (whole or 3/4 of original length or longer) milled kernels. milled rice yield A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran. https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#M A shoot axis internode morphology trait (TO:0000755) which is the length of a shoot axis internode (PO:0005005). plant_trait_ontology INLG (related) TO:0000145 shoot axis internode length A shoot axis internode morphology trait (TO:0000755) which is the length of a shoot axis internode (PO:0005005). Gramene:pankaj_jaiswal A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010). TO:0000395 PATO:0000122 TO_GIT:195 plant_trait_ontology SDLG (related) TO:0000146 Seed length is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. seed length A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010). Gramene:pankaj_jaiswal IRRI:SES PO:0009010 TO:moorel Causal agent: rice hoja blanca virus (RHBV). Symptoms: cream colored to yellow spots, elongating and coalescing to form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical "parrot beak" shape of deformation. plant_trait_ontology HBVRS (related) RHBV (related) TO:0000147 rice hoja blanca disease resistance Causal agent: rice hoja blanca virus (RHBV). Symptoms: cream colored to yellow spots, elongating and coalescing to form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical "parrot beak" shape of deformation. Gramene:pankaj_jaiswal IRRI:SES An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a viral pathogen infection as compared to the susceptible and/or the reference plants of the same species. plant_trait_ontology TO:0000148 It represents the damage done by the diease and/or the viral pathogen to the plant. The damage is a direct measure of resistance to the particular viral strain causing the diease. viral disease resistance An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a viral pathogen infection as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal IRRI:SES A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010). PATO:0000921 TO_GIT:194 plant_trait_ontology SDWD (related) plump seed (related) TO:0000149 Seed width is measured in millimeters as the distance across the seed and is a component of the seed size (TO:0000391) and can be a component of seed quality (TO:0000162). Refers to (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. seed width A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010). Gramene:pankaj_jaiswal IRRI:SES PO:0009010 TO:moorel true Causal agent: Pelopidas mathias (Fabricius) and Parnara guttata. plant_trait_ontology SKIPRS (related) TO:0000151 rice skipper resistance Causal agent: Pelopidas mathias (Fabricius) and Parnara guttata. Gramene:pankaj_jaiswal A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study. plant_trait_ontology NOP (related) NP (related) PN (related) PNNB (related) TP (related) number of effective tiller per plant (related) number of panicle (related) panicle number per plant (related) panicle number per tiller (related) seed setting tillers per plant (related) spike number (related) TO:0000152 panicle number A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study. Gramene:pankaj_jaiswal TO:moorel Relative yield is calculated as a ratio of yield in stress to that of control. plant_trait_ontology RELYLD (related) RY (related) TO:0000153 relative yield Relative yield is calculated as a ratio of yield in stress to that of control. Gramene:jcl Gramene:pankaj_jaiswal Causal agent: Stenchaetothrips biformis. monitored at growth stage 2-3. plant_trait_ontology THRIPSRS (related) TO:0000154 thrips resistance Causal agent: Stenchaetothrips biformis. monitored at growth stage 2-3. Gramene:pankaj_jaiswal IRRI:SES The index is calculated as, DSI = (1-Yds/Yns), where Yds and Yns are mean yields of a given genotype in drought susceptible (DS) and non-susceptible (NS) environments respectively. plant_trait_ontology DRSID (related) DRSSID (related) DSI (related) drought score (related) drought sensitivity index (related) TO:0000155 drought susceptibility index The index is calculated as, DSI = (1-Yds/Yns), where Yds and Yns are mean yields of a given genotype in drought susceptible (DS) and non-susceptible (NS) environments respectively. Gramene:jcl Gramene:pankaj_jaiswal At 50 days after sowing (DAS), the dry weight of roots penetrated through the wax-petrolatum layer is measured. plant_trait_ontology PENRTDWT (related) PRDW (related) TO:0000156 penetrated root dry weight At 50 days after sowing (DAS), the dry weight of roots penetrated through the wax-petrolatum layer is measured. Gramene:jcl Gramene:pankaj_jaiswal Assay determines temperature of the leaf canopy. plant_trait_ontology CANTMP (related) TO:0000157 canopy temperature Assay determines temperature of the leaf canopy. Gramene:jcl Gramene:pankaj_jaiswal Sensitivity to the red light content in the growth environment. plant_trait_ontology Pr light sensitivity (related) RLTSN (related) TO:0000158 red light sensitivity Sensitivity to the red light content in the growth environment. Gramene:pankaj_jaiswal Sensitivity response observed in an environment illuminated with blue light. plant_trait_ontology BLTSN (related) TO:0000159 blue light sensitivity Sensitivity response observed in an environment illuminated with blue light. Gramene:pankaj_jaiswal Response shown by the plant in the presence of UV light stress. plant_trait_ontology UV resistance (related) UVRS (related) Ultraviolet light sensitivity (related) Ultraviolet resistance (related) TO:0000160 UV light sensitivity Response shown by the plant in the presence of UV light stress. Gramene:pankaj_jaiswal Response shown by the plant in terms of sensitivity to one or more types of radiation stress (quality and quantity of light). plant_trait_ontology RADSN (related) radiation sensitivity (related) response to radiation (related) TO:0000161 radiation response trait Response shown by the plant in terms of sensitivity to one or more types of radiation stress (quality and quantity of light). Gramene:pankaj_jaiswal A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement. TO:0000588 TO_GIT:209 plant_trait_ontology TO:0000162 grain quality trait A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement. Gramene:pankaj_jaiswal TO:cooperl Response with respect to application of auxin. plant_trait_ontology AUXSN (related) IAA response (related) IAA sensitivity (related) indole-3-acetic acid response (related) indole-3-acetic acid sensitivity (related) TO:0000163 The most important auxin produced by plants is indole-3-acetic acid (IAA). auxin sensitivity Response with respect to application of auxin. Gramene:pankaj_jaiswal Response by the plant in terms of resistivity or sensitivity to either the biotic or the abiotic types of stress. plant_trait_ontology crop damage (related) stress resistance (related) stress susceptibility (related) stress tolerance (related) TO:0000164 stress trait Response by the plant in terms of resistivity or sensitivity to either the biotic or the abiotic types of stress. Gramene:pankaj_jaiswal A panicle inflorescence morphology trait (TO:0000847) which is the extent of coverage of panicle inflorescence (PO:0030123) by a sheath of a flag leaf (PO:0020103). plant_trait_ontology Exs (related) PNEX (related) TO:0000165 panicle inflorescence exsertion A panicle inflorescence morphology trait (TO:0000847) which is the extent of coverage of panicle inflorescence (PO:0030123) by a sheath of a flag leaf (PO:0020103). Gramene:pankaj_jaiswal IRRI:SES Sensitivity to the gibberellic acid content in the growth medium or on external application. plant_trait_ontology GA3 response (related) GASN (related) GB response (related) Gibberellin response (related) gibberellic acid response (related) TO:0000166 gibberellic acid sensitivity Sensitivity to the gibberellic acid content in the growth medium or on external application. Gramene:pankaj_jaiswal Sensitivity to the cytokinin content in the growth medium or external application. plant_trait_ontology CKSN (related) TO:0000167 cytokinin sensitivity Sensitivity to the cytokinin content in the growth medium or external application. Gramene:pankaj_jaiswal Response by the plant in terms of resistivity or sensitivity to abiotic stress. plant_trait_ontology abiotic stress tolerance (related) TO:0000168 abiotic stress trait Response by the plant in terms of resistivity or sensitivity to abiotic stress. Gramene:pankaj_jaiswal Abortion of microspore development at trinucleate stage. plant_trait_ontology BOROCMS (related) CMS-boro (related) TO:0000169 chinsurah boro CMS Abortion of microspore development at trinucleate stage. Gramene:pankaj_jaiswal IRRI:SES Some plants can elongate and grow in areas annually flooded to varying depths. The scale is based on the performance of check varieties. Specify water depth under which the data was recorded. plant_trait_ontology Elon (related) TO:0000170 elongation ability Some plants can elongate and grow in areas annually flooded to varying depths. The scale is based on the performance of check varieties. Specify water depth under which the data was recorded. IRRI:SES OBSOLETE. A stature and vigor trait (TO:0000133) which is the height of a whole plant (PO:0000003) or another plant structure (PO:0009011). TO_GIT:226 plant_trait_ontology TO:0000171 Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. height trait true OBSOLETE. A stature and vigor trait (TO:0000133) which is the height of a whole plant (PO:0000003) or another plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl Sensitivity to the jasmonic acid content in the growth medium or on external application. plant_trait_ontology JASN (related) TO:0000172 jasmonic acid sensitivity Sensitivity to the jasmonic acid content in the growth medium or on external application. Gramene:pankaj_jaiswal Sensitivity to ethylene (C2H2) content in the growth medium or the environment. plant_trait_ontology ETHSN (related) ethylene response (related) TO:0000173 ethylene sensitivity Sensitivity to ethylene (C2H2) content in the growth medium or the environment. Gramene:pankaj_jaiswal OBSOLETE. plant_trait_ontology TO:0000174 maturity trait true Causal agent: Xanthomonas oryzae pv. oryzae. plant_trait_ontology BB (related) BBRS (related) leaf blight (related) TO:0000175 Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Young leaves should not be inoculated for assay. Old or leaves with symptoms of nutrient deficiency or other diseases should also be avoided for inoculation. rice bacterial blight disease resistance Causal agent: Xanthomonas oryzae pv. oryzae. Gramene:pankaj_jaiswal IRRI:SES A nutrient sensitivity (TO:0000480) response shown by the plant grown in either an excess or deficient amount of the macronutrient in the growth medium. plant_trait_ontology macronutrient deficiency (related) TO:0000176 macronutrient sensitivity A nutrient sensitivity (TO:0000480) response shown by the plant grown in either an excess or deficient amount of the macronutrient in the growth medium. Gramene:pankaj_jaiswal An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide 2,4-dichlorophenoxyacetic acid (2,4 D). PECO:0007180 plant_trait_ontology 2,4 D sensitivity (related) 24DSN (related) TO:0000177 It is expected that the herbicide application must not affect the agronomic yield, if any. 2,4-dichlorophenoxyacetic acid sensitivity An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide 2,4-dichlorophenoxyacetic acid (2,4 D). Gramene:pankaj_jaiswal Plant sensitivity to soils with acidic conditions (pH<7). plant_trait_ontology TO:0000178 acid soil sensitivity Plant sensitivity to soils with acidic conditions (pH<7). Gramene:pankaj_jaiswal TO:moorel Response by the plant in terms of resistivity or sensitivity to biotic stress. plant_trait_ontology TO:0000179 biotic stress trait Response by the plant in terms of resistivity or sensitivity to biotic stress. Gramene:pankaj_jaiswal A spikelet morphology trait (TO:0000657) which is the fertility to a spikelet (PO:0009051). plant_trait_ontology SPKFRT (related) SpFert (related) percent sterility (related) seed setting (related) TO:0000180 Determined by percent of spikelets with grains identified by pressing the spikelets with the fingers and counting those that have no grains or the percent seed setting. Refer to fertility (PATO:0000274): A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction. spikelet fertility A spikelet morphology trait (TO:0000657) which is the fertility to a spikelet (PO:0009051). Gramene:pankaj_jaiswal IRRI:SES PO:0009051 TO:moorel A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010). TO_GIT:196 SDWT (exact) plant_trait_ontology TO:0000181 Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body. seed weight A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010). Gramene:pankaj_jaiswal PO:0009010 TO:moorel The tolerance exhibited by a plant or a group of plants (population) towards the applied insecticide. plant_trait_ontology insecticide tolerance (related) TO:0000182 insecticide sensitivity The tolerance exhibited by a plant or a group of plants (population) towards the applied insecticide. TO:moorel The trait instances, which either cannot be assigned any of the eight top level parent terms such as biochemical, anatomy, development quality, stature/vigor, sterility/fertility, stress and the yield or are yet to be assigned a parent. plant_trait_ontology TO:0000183 other miscellaneous trait The trait instances, which either cannot be assigned any of the eight top level parent terms such as biochemical, anatomy, development quality, stature/vigor, sterility/fertility, stress and the yield or are yet to be assigned a parent. Gramene:pankaj_jaiswal A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a seed (PO:0009010). plant_trait_ontology TO:0000184 seed morphology trait A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a seed (PO:0009010). Gramene:pankaj_jaiswal PO:0009010 TO:moorel Color of the stigma in a blossoming flower. plant_trait_ontology STICL (related) SgC (related) TO:0000185 stigma color Color of the stigma in a blossoming flower. Gramene:pankaj_jaiswal IRRI:SES OBSOLETE. plant_trait_ontology TO:0000186 environmental stress related trait true An anther morphology trait (TO:1000022) which is the color (PATO:0000014) of an anther (PO:0009066) TO_GIT:385 plant_trait_ontology ANTCL (related) TO:0000187 anther color true true true An anther morphology trait (TO:1000022) which is the color (PATO:0000014) of an anther (PO:0009066) TO:austin_meier Drought sensitivity is highly interactive with crop phenology, plant growth prior to stress, and timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks to cause marked differences in drought sensitivity during the vegetative stage and at least 7 rainless days during the reproductive stage to cause severe drought injury. Leaf rolling precedes leaf drying during drought. Repeated ratings are recommended through progress of the drought. plant_trait_ontology DRS (related) DRSN (related) drought susceptibility (related) TO:0000188 drought sensitivity Drought sensitivity is highly interactive with crop phenology, plant growth prior to stress, and timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks to cause marked differences in drought sensitivity during the vegetative stage and at least 7 rainless days during the reproductive stage to cause severe drought injury. Leaf rolling precedes leaf drying during drought. Repeated ratings are recommended through progress of the drought. IRRI:SES An embryo morphology trait (TO:0000064) which is the absence of embryo in the developing seed. plant_trait_ontology germless (related) TO:0000189 embryoless An embryo morphology trait (TO:0000064) which is the absence of embryo in the developing seed. Gramene:pankaj_jaiswal TO:moorel A seed coat morphology trait (TO:0000838) which is the color of the seed coat (PO:0009088). PATO:0000014 plant_trait_ontology SCC (related) SDCCL (related) bran color (related) TO:0000190 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. seed coat color A seed coat morphology trait (TO:0000838) which is the color of the seed coat (PO:0009088). Gramene:pankaj_jaiswal IRRI:SES PO:0009088 TO:moorel Causal agent: Dicladispa armigera. plant_trait_ontology HISPRS (related) TO:0000191 rice hispa resistance Causal agent: Dicladispa armigera. Gramene:pankaj_jaiswal Causal agent: Cnaphalocrocis medinalis. plant_trait_ontology LFRRS (related) TO:0000192 leaf-roller resistance Causal agent: Cnaphalocrocis medinalis. Gramene:pankaj_jaiswal An embryo morphology trait (TO:0000064) which is the shape of a plant embryo (PO:0009009). PATO:0000052 plant_trait_ontology TO:0000193 Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). embryo shape An embryo morphology trait (TO:0000064) which is the shape of a plant embryo (PO:0009009). PO:0009009 TO:moorel An embryo shape trait (TO:0000193) which is a globular plant embryo (PO:0009009). PATO:0001499 plant_trait_ontology TO:0000194 Refer to globular (PATO:0001499): A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). globular embryo An embryo shape trait (TO:0000193) which is a globular plant embryo (PO:0009009). PO:0009009 TO:moorel A plant embryo morphology trait (TO:0000064) which is an embryo of the germinating seed not producing a shoot. plant_trait_ontology SHMIN (related) TO:0000195 shootless embryo A plant embryo morphology trait (TO:0000064) which is an embryo of the germinating seed not producing a shoot. Gramene:pankaj_jaiswal TO:moorel A polysaccharide content trait (TO:0006007) which is the amount of amylose (CHEBI:28102) in a plant structure (PO:0009011). CHEBI:28102 plant_trait_ontology AMYCN (related) Amy (related) TO:0000196 Amylose is a helical polymer made of α-D-glucose units, bound to each other through α(1→4) glycosidic bonds. This polysaccharide is one of the two components of starch, making up approximately 20-30% of the structure. The other component is amylopectin, which makes up 70–80% of the structure. (REF: Wikipedia) amylose content A polysaccharide content trait (TO:0006007) which is the amount of amylose (CHEBI:28102) in a plant structure (PO:0009011). IRRI:SES ISBN:198506732 A ligule morphology trait (TO:0002748) which is the color of a ligule (PO:0020105). PATO:0000014 plant_trait_ontology LIGCL (related) LgC (related) TO:0000197 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. ligule color A ligule morphology trait (TO:0002748) which is the color of a ligule (PO:0020105). Gramene:pankaj_jaiswal IRRI:SES PO:0020105 TO:cooperl Absence of roots in the seedling or plant. plant_trait_ontology RTMIN (related) TO:0000198 rootless Absence of roots in the seedling or plant. Gramene:pankaj_jaiswal plant_trait_ontology GMS (related) TO:0000199 genic male sterility A stem strength (TO:0000051) trait which a measure of the fragility of a grass stem (culm; PO:0009047). plant_trait_ontology TO:0000200 brittle culm A stem strength (TO:0000051) trait which a measure of the fragility of a grass stem (culm; PO:0009047). Gramene:pankaj_jaiswal TO:cooperl A panicle inflorescence morphology trait (TO:0000847) which is the variation in color of the panicle inflorescence (PO:0030123). PATO:0000014 plant_trait_ontology PNCL (related) TO:0000201 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. panicle inflorescence color A panicle inflorescence morphology trait (TO:0000847) which is the variation in color of the panicle inflorescence (PO:0030123). Gramene:pankaj_jaiswal Ratio of germinated to non-germinated seeds. plant_trait_ontology GERMRO (related) TO:0000202 germination ratio Ratio of germinated to non-germinated seeds. Gramene:pankaj_jaiswal Causal agent: Xanthomonas oryzae pv. oryzicola. plant_trait_ontology BLS (related) BLSRS (related) TO:0000203 Symptoms: linear lesions with small bacterial exudates evident. This scale may also be used for leaf smut caused by Entyloma oryzae. rice bacterial leaf streak disease resistance Causal agent: Xanthomonas oryzae pv. oryzicola. Gramene:pankaj_jaiswal IRRI:SES Causal agent: Xanthomonas oryzae pv. oryzae. plant_trait_ontology SDLBTRS (related) kresek (related) leaf blight (related) TO:0000204 Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Kresek or seedling blight causes wilting and death of plant. rice seedling blight disease resistance Causal agent: Xanthomonas oryzae pv. oryzae. Gramene:pankaj_jaiswal IRRI:SES Causal agent: Sagotella furcifera. Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper). plant_trait_ontology WBPH (related) WBPHRS (related) TO:0000205 white-backed planthopper resistance Causal agent: Sagotella furcifera. Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper). Gramene:pankaj_jaiswal IRRI:SES A leaf attitude (TO:0000206) which is the angle of a leaf (PO:0025034) measured against the stem. jaiswalp PATO:0000602 plant_trait_ontology LBP (related) LFAG (related) TO:0000206 In rice, it is measured against the culm on the leaf below the flag leaf. Refer to angle value (PATO:0000602). leaf angle A leaf attitude (TO:0000206) which is the angle of a leaf (PO:0025034) measured against the stem. IRRI:SES TO:cooperl A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003). PATO:0000119 TO_GIT:367 TO_GIT:84 plant_trait_ontology Ht (related) PTHT (related) shoot height (related) TO:0000207 Comment: Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. plant height A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003). IRRI:SES PO:0000003 TO:cooperl A spikelet floret morphology trait (TO:0000274) which is the number of lemma (PO:0009037) in a spikelet floret (PO:0009082). plant_trait_ontology TO:0000208 lemma number true A spikelet floret morphology trait (TO:0000274) which is the number of lemma (PO:0009037) in a spikelet floret (PO:0009082). Gramene:pankaj_jaiswal PATO:0001555 PO:0009037 PO:0009082 TO:cooperl TO:moorel A spikelet floret morphology trait (TO:0000274) which is the number of palea (PO:0009038) in a spikelet floret (PO:0009082). plant_trait_ontology PALNB (related) TO:0000209 palea number true A spikelet floret morphology trait (TO:0000274) which is the number of palea (PO:0009038) in a spikelet floret (PO:0009082). Gramene:pankaj_jaiswal PATO:0001555 PO:0009038 PO:0009082 TO:cooperl TO:moorel A stamen morphology trait (TO:0000215) which is the number of anthers (PO:0009066) in a stamen (PO:0009029). TO_GIT:387 plant_trait_ontology ANTNB (related) TO:0000210 anther number true A stamen morphology trait (TO:0000215) which is the number of anthers (PO:0009066) in a stamen (PO:0009029). Gramene:pankaj_jaiswal TO:cooperl Scored by gel consistency type in mm. plant_trait_ontology GELCON (related) GelC (related) TO:0000211 gel consistency Scored by gel consistency type in mm. IRRI:SES Causal agent: Nephotettix spp. (Nephotettix virescens and Nephotettix cincticeps). It is the major vector for transmitting the tungro virus disease. Symptoms: Partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infected areas in the field may be patchy. plant_trait_ontology GLFHRS (related) GLH (related) TO:0000212 green leafhopper resistance Causal agent: Nephotettix spp. (Nephotettix virescens and Nephotettix cincticeps). It is the major vector for transmitting the tungro virus disease. Symptoms: Partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infected areas in the field may be patchy. Gramene:pankaj_jaiswal IRRI:SES Causal agent: rice grassy stunt virus 1 (RGSV1) and rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots. plant_trait_ontology RGSVRS (related) TO:0000213 rice grassy stunt 1 and 2 virus resistance Causal agent: rice grassy stunt virus 1 (RGSV1) and rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots. Gramene:pankaj_jaiswal IRRI:SES An anther morphology trait (TO:1000022) which is the shape (PATO:0000052) of an anther (PO:0009066). TO_GIT:385 plant_trait_ontology ANTSHP (related) TO:0000214 Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). anther shape true true true An anther morphology trait (TO:1000022) which is the shape (PATO:0000052) of an anther (PO:0009066). TO:ethan_johnson A microsporophyll morphology trait (TO:0000868) which is a quality of a stamen (PO:0009029). plant_trait_ontology stamen related trait (related) TO:0000215 stamen morphology trait A microsporophyll morphology trait (TO:0000868) which is a quality of a stamen (PO:0009029). Gramene:pankaj_jaiswal PO:0009029 TO:moorel OBSOLETE. plant_trait_ontology TO:0000216 grassy stunt virus disease true Male sterility affected by both temperature and photoperiod. plant_trait_ontology TPGMS (related) thermo-photoperiod sensitive genic male sterility (related) TO:0000217 genic male sterility-thermo-photoperiod sensitive Male sterility affected by both temperature and photoperiod. Gramene:pankaj_jaiswal IRRI:SES Observations are made on staining behavior and number of nuclei in most of the pollen. plant_trait_ontology abortion pattern (related) abortion pattern of male sterile lines (related) TO:0000218 pollen abortion type Observations are made on staining behavior and number of nuclei in most of the pollen. Gramene:pankaj_jaiswal IRRI:SES OBSOLETE. plant_trait_ontology culm morphology (related) TO:0000219 stem morphology true Causal agent: Leptocorisa oratorius. Monitored at growth stage 7-9, resistance is a measure of damaged grains per panicle. plant_trait_ontology BUGRS (related) RB (related) TO:0000220 rice bug resistance Causal agent: Leptocorisa oratorius. Monitored at growth stage 7-9, resistance is a measure of damaged grains per panicle. Gramene:pankaj_jaiswal IRRI:SES A glume morphology trait (TO:0000869) which is the color of a glume (PO:0009039). PATO:0000014 plant_trait_ontology GLCL (related) glume discoloration (related) glume pigmentation (related) pigmentation of glume (related) TO:0000221 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. glume color A glume morphology trait (TO:0000869) which is the color of a glume (PO:0009039). Gramene:pankaj_jaiswal PO:0009039 TO:moorel A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice. TO_GIT:422 plant_trait_ontology HEADR (related) head milled rice (related) head rice ratio (related) TO:0000222 Depending on the grain type, whole milled kernels are spearated using special sized screens. The weight of whole milled kernels or head rice is expressed as a percentage of the original rough rice sample. head rice yield A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice. TO:cooperl https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#H A carpel morphology trait (TO:0006012) which is a quality of a pistil. plant_trait_ontology pistil related trait (related) TO:0000223 pistil morphology trait A carpel morphology trait (TO:0006012) which is a quality of a pistil. Gramene:pankaj_jaiswal TO:moorel Sensitivity to the iron ion content in the growth medium. It is important for synthesis of chlorophyll and some enzyme activities. plant_trait_ontology FESN (related) FeTox (related) iron toxicity (related) TO:0000224 iron sensitivity Sensitivity to the iron ion content in the growth medium. It is important for synthesis of chlorophyll and some enzyme activities. Gramene:pankaj_jaiswal IRRI:SES An androecium morphology trait (TO:0000215) which is the number of stamens (PO:0009029) present in an androecium (PO:0009061). TO_GIT:386 plant_trait_ontology STANB (related) TO:0000225 stamen number An androecium morphology trait (TO:0000215) which is the number of stamens (PO:0009029) present in an androecium (PO:0009061). Gramene:pankaj_jaiswal PO:0009029 PO:0009049 TO:austin_meier TO:moorel A measure of either the absence of auricle or the length of auricle being zero. auricle absence (exact) auricle absent (exact) plant_trait_ontology AUMIN (related) TO:0000226 auricleless A measure of either the absence of auricle or the length of auricle being zero. Gramene:pankaj_jaiswal A root morphology trait (TO:0000043) which is the length of a root (PO:0009005). GIT_TO:365 PATO:0000122 plant_trait_ontology MRD (related) MRL (related) RTLG (related) maximum root depth (related) maximum root length (related) TO:0000227 refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points. root length A root morphology trait (TO:0000043) which is the length of a root (PO:0009005). GR:pj Gramene:jcl TO:austin_meier TO:cooperl A plant quality trait (TO:0000597) which is the amount of moisture in a plant structure (PO:0009011). plant_trait_ontology TO:0000228 moisture content trait A plant quality trait (TO:0000597) which is the amount of moisture in a plant structure (PO:0009011). TO:cooperl Sensitivity response on the plant development and the related growth stages by the duration of light, to which the plant has been exposed. plant_trait_ontology PPDSN (related) TO:0000229 photoperiod sensitivity trait Sensitivity response on the plant development and the related growth stages by the duration of light, to which the plant has been exposed. Gramene:pankaj_jaiswal Absence of crown roots in the plant. plant_trait_ontology CWRTMIN (related) TO:0000230 crown rootless Absence of crown roots in the plant. Gramene:pankaj_jaiswal An endosperm morphology trait (TO:0000575) which is the absence of endosperm (PO:0009089) in the seed (PO:0009010) or grain. TO_GIT:133 plant_trait_ontology ENDMIN (related) TO:0000231 This is also an endosperm quality trait (TO:0000587). endospermless An endosperm morphology trait (TO:0000575) which is the absence of endosperm (PO:0009089) in the seed (PO:0009010) or grain. Gramene:pankaj_jaiswal PO:0009010 PO:0009089 TO:moorel Caused by the interaction of cytoplasmic (mitochondrial) and nuclear genomes. The trait shows non-mendelian inheritance or maternal inheritance. cytoplasmic male sterility (sensu Oryza) (exact) plant_trait_ontology CMS (related) TO:0000232 rice cytoplasmic male sterility Caused by the interaction of cytoplasmic (mitochondrial) and nuclear genomes. The trait shows non-mendelian inheritance or maternal inheritance. Gramene:pankaj_jaiswal IRRI:SES A root morphology trait (TO:0000043) which is the volume of a root (PO:0009005). plant_trait_ontology RTVOL (related) TO:0000233 Root volume is an indirect measure of root mass or density and can be quantified by water displacement method, in cubic centimeters. root volume A root morphology trait (TO:0000043) which is the volume of a root (PO:0009005). GR_REF:6917 Gramene:pankaj_jaiswal The embryo of the germinating seed does not produce roots. plant_trait_ontology TO:0000234 radicleless The embryo of the germinating seed does not produce roots. Gramene:pankaj_jaiswal A ligule morphology trait (TO:0002748) which is the absence of a ligule (PO:0020105). PATO:0000462 plant_trait_ontology LIGMIN (related) TO:0000235 Refer to absent (PATO:0000462): A quality denoting the lack of an entity. liguleless A ligule morphology trait (TO:0002748) which is the absence of a ligule (PO:0020105). Gramene:pankaj_jaiswal PO:0020105 TO:cooperl crop damage resistance trait (exact) plant_trait_ontology TO:0000236 crop damage resistance Response by the plant in terms of sensitivity to water stress (quality and quantity of water). plant_trait_ontology TO:0000237 water stress trait Response by the plant in terms of sensitivity to water stress (quality and quantity of water). Gramene:pankaj_jaiswal A chemical stress sensitivity (TO:0000238) which is the response by the plant to a specific growth medium. plant_trait_ontology edaphic (related) TO:0000238 growth media composition sensitivity A chemical stress sensitivity (TO:0000238) which is the response by the plant to a specific growth medium. TO:moorel OBSOLETE. plant_trait_ontology TO:0000239 plant genetic trait unknown true A lemma morphology trait (TO:1000023) which is the length of a sterile lemma (PO:0009040). TO_GIT:390 plant_trait_ontology SLmL (related) STLEMLG (related) TO:0000240 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. sterile lemma length A lemma morphology trait (TO:1000023) which is the length of a sterile lemma (PO:0009040). IRRI:SES PATO:0000122 PO:0009040 TO:cooperl TO:moorel A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant. plant_trait_ontology LFNB (related) TO:0000241 leaf number A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant. Gramene:pankaj_jaiswal TO:cooperl Response by the plant in terms of resistivity or sensitivity to microbes. plant_trait_ontology TO:0000242 microbial damage resistance Response by the plant in terms of resistivity or sensitivity to microbes. Gramene:pankaj_jaiswal Measured as number of calli capable of differentiating into roots and(or) shoots under in vitro tissue culture condition. plant_trait_ontology INVRAB (related) TO:0000243 in vitro regeneration ability Measured as number of calli capable of differentiating into roots and(or) shoots under in vitro tissue culture condition. Gramene:pankaj_jaiswal A coleoptile morphology trait (TO:0000753) which is the the color of a coleoptile (PO:0020033). PATO:0000014 TO_GIT:62 plant_trait_ontology COLCL (related) TO:0000244 coleoptile color A coleoptile morphology trait (TO:0000753) which is the the color of a coleoptile (PO:0020033). Gramene:pankaj_jaiswal PO:0020033 TO:cooperl No pollen development. plant_trait_ontology TO:0000245 An example is rice TGMS line Norin PL12. pollen free No pollen development. Gramene:pankaj_jaiswal IRRI:SES Causal agent: Sogatodes oryzicola (Tagosodes orizicolus). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper). plant_trait_ontology DELRS (related) RDel (related) TO:0000246 The evaluation scales are based on symptoms. Incidence of dead plants could be considered for final evaluation. rice delphacid resistance Causal agent: Sogatodes oryzicola (Tagosodes orizicolus). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper). Gramene:pankaj_jaiswal IRRI:SES plant_trait_ontology TO:0000247 other nutrient sensitivity A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the primary macronutrient in the growth medium. plant_trait_ontology TO:0000248 primary macronutrient sensitivity A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the primary macronutrient in the growth medium. TO:moorel A measure of aging of leaf. plant_trait_ontology Foilar senescence (related) LFSNS (related) Sen (related) TO:0000249 Rapid senescence of leaves can be detrimental to yield. Can be measured by loss of normal leaf color. In triticeae it is often measured on the flag or the second from top leaf. leaf senescence trait A measure of aging of leaf. IRRI:SES A plant trait (TO:0000387) which is a measure of the active and/or healthy growth and development of a plant stucture (PO:0009011) or a population of plants. TO_GIT:xyz plant vigour trait (exact) plant_trait_ontology TO:0000250 Plants vigor traits include those of a whole plant (PO:00009011; inclucluding a seedling), or parts of the plant such as a seed (PO:0009010), or of explants such as anthers (PO:0009066) or cuttings. plant vigor trait A plant trait (TO:0000387) which is a measure of the active and/or healthy growth and development of a plant stucture (PO:0009011) or a population of plants. TO:cooperl A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the secondary macronutrient in the growth medium. plant_trait_ontology TO:0000251 secondary macronutrient sensitivity A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the secondary macronutrient in the growth medium. TO:moorel Sensitivity response shown by the plant grown in either the excess or deficient amount of the non-mineral nutrients in the growth medium. These nutrients are found in the air and water. plant_trait_ontology TO:0000252 non-mineral nutrient sensitivity Sensitivity response shown by the plant grown in either the excess or deficient amount of the non-mineral nutrients in the growth medium. These nutrients are found in the air and water. Gramene:pankaj_jaiswal plant_trait_ontology SDDOR (related) TO:0000253 seed dormancy A growth media composition sensitivity (TO:0000238) which is the response of the plant to the pH of the growth media (soil/culture media), whether it be acidic or alkaline. plant_trait_ontology soil pH stress (related) TO:0000254 growth media pH sensitivity A growth media composition sensitivity (TO:0000238) which is the response of the plant to the pH of the growth media (soil/culture media), whether it be acidic or alkaline. Gramene:pankaj_jaiswal TO:moorel Causal agent: Rhizoctonia solani. Symptom: Grayish-green lesions may enlarge and coalesce with other lesions, mostly on lower leaf sheaths, but occasionally on the leaves. TO_GIT:67 plant_trait_ontology SHBTRS (related) ShB (related) TO:0000255 sheath blight disease resistance Causal agent: Rhizoctonia solani. Symptom: Grayish-green lesions may enlarge and coalesce with other lesions, mostly on lower leaf sheaths, but occasionally on the leaves. IRRI:SES OBSOLETE. A genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual that is linked to a physical or genetic marker plant_trait_ontology TO:0000256 genetic trait true OBSOLETE. A genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual that is linked to a physical or genetic marker Gramene:pankaj_jaiswal The extent of the root branching as determined under variable treatments and environments. plant_trait_ontology RTBR (related) rbr (related) TO:0000257 root branching The extent of the root branching as determined under variable treatments and environments. Gramene:pankaj_jaiswal A leaf morphology trait (TO:0000748) which is the thickness of a leaf (PO:0025034). PATO:0000915 plant_trait_ontology TO:0000258 Refers to thickness PATO:0000915 A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf thickness A leaf morphology trait (TO:0000748) which is the thickness of a leaf (PO:0025034). PO:0025034 TO:moorel Tolerance to warm temperatures if plant is exposed to above than permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages. Mainly scored in terms of spikelet fertility in grasses. plant_trait_ontology HTol (related) TO:0000259 heat tolerance Tolerance to warm temperatures if plant is exposed to above than permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages. Mainly scored in terms of spikelet fertility in grasses. Gramene:pankaj_jaiswal IRRI:SES Since there is no genetic resistance to birds, the damage can be quantified as it does represent resistance. Factors as flag leaf angle or panicle exsertion are important. plant_trait_ontology BD (related) TO:0000260 bird damage resistance Since there is no genetic resistance to birds, the damage can be quantified as it does represent resistance. Factors as flag leaf angle or panicle exsertion are important. Gramene:pankaj_jaiswal IRRI:SES An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to insect infestation as compared to the susceptible and/or the reference plants of the same species. jaiswalp insect resistance (narrow) plant_trait_ontology TO:0000261 It represents the damage done by the insects to the plant. The damage is a direct measure of resistance to the particular insect variety. The test evaluation is valid if insect population is uniformly distributed at a high level across the screening box or the field. insect damage resistance An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to insect infestation as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal IRRI:SES A panicle inflorescence morphology trait (TO:0000847) which is the shape of a panicle inflorescence (PO:0030123). PATO:0000052 plant_trait_ontology TO:0000262 Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). panicle inflorescence shape A panicle inflorescence morphology trait (TO:0000847) which is the shape of a panicle inflorescence (PO:0030123). Gramene:pankaj_jaiswal true A lemma and palea morphology trait (TO:0000079) which is the color of the lemma (PO:0009037) and the palea (PO:0009038). PATO:0000014 plant_trait_ontology LEMCL (related) LEMPALCL (related) Lemma color (related) LmPC (related) PALCL (related) palea color (related) TO:0000264 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. lemma and palea color A lemma and palea morphology trait (TO:0000079) which is the color of the lemma (PO:0009037) and the palea (PO:0009038). Gramene:pankaj_jaiswal IRRI:SES PO:0009037 PO:0009038 TO:moorel Response shown by the plant in the presence of a light quality stress. plant_trait_ontology response to light quality (related) TO:0000265 Light quality is defined by the wavelength of the light type. light quality sensitivity Response shown by the plant in the presence of a light quality stress. Gramene:pankaj_jaiswal An endosperm morphology trait (TO:0000575) which is the chalkiness of an endosperm (PO:0009089) on the scale of (a) white belly, (b) white center or (c) white back. TO_GIT:133 plant_trait_ontology CHALK (related) Clk (related) chalkiness of endosperm (related) TO:0000266 This is also an endosperm quality trait (TO:0000587). chalky endosperm An endosperm morphology trait (TO:0000575) which is the chalkiness of an endosperm (PO:0009089) on the scale of (a) white belly, (b) white center or (c) white back. Gramene:pankaj_jaiswal IRRI:SES TO:moorel An inflorescence morphology trait (TO:0000373) which is the variation in the type of inflorescence, whether due to extent and number of branching, branch angles or modified form of the inflorescence (PO:0009049). TO:0000500 INFLOTYPE (exact) plant_trait_ontology inflorescence type (related) TO:0000267 inflorescence type An inflorescence morphology trait (TO:0000373) which is the variation in the type of inflorescence, whether due to extent and number of branching, branch angles or modified form of the inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel An inflorescence morphology trait (TO:0000373) which is the shape of an inflorescence (PO:0009049). PATO:0000052 TO_GIT:92 TO_GIT:97 head shape (narrow) plant_trait_ontology TO:0000268 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). inflorescence shape An inflorescence morphology trait (TO:0000373) which is the shape of an inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:cooperl A grain weight (TO:0000919) which is the weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000). TO:0000518 100-grain weight (exact) HGRWT (exact) hundred grain weight (exact) plant_trait_ontology HSDWT (related) hundred seed weight (related) TO:0000269 Hundred grain weights are measured in grams, on a precision balance on 100 well-developed whole grains (with the caryopsis hull; PO:0006000), dried to 13% moisture content. 100-grain weight A grain weight (TO:0000919) which is the weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000). Gramene:pankaj_jaiswal IRRI:SES TO:cooperl An inflorescence axis morphology trait (TO:0000782) which is the angle of an inflorescence axis (PO:0020122). PATO:0002326 plant_trait_ontology TO:0000270 Refers to the angle ((PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle) of an inflorescence axis (PO:0020122). inflorescence axis angle An inflorescence axis morphology trait (TO:0000782) which is the angle of an inflorescence axis (PO:0020122). Gramene:pankaj_jaiswal PO:0020122 TO:cooperl An inflorescence morphology trait (TO:0000373) trait which is the length of an inflorescence (PO:0009049). plant_trait_ontology TO:0000271 inflorescence length An inflorescence morphology trait (TO:0000373) trait which is the length of an inflorescence (PO:0009049). TO:cooperl OBSOLETE. plant_trait_ontology TO:0000272 plant survivability true Causal agent: Pseudaletia unipuncta, Spodoptera mauritia and Spodoptera praefica. The swarming caterpillars cause severe damage to rice plants in nursery beds. plant_trait_ontology AWRRS (related) TO:0000273 The worms appear suddenly in masses and move like an army from field to field so that seedbeds or the direct seeded fields look as if grazed by cattles. Generally, a transplanted crop is not severely affected. Damage by armyworms is most serious during periods of stem elongation and grain formation. Larvae defoliate plants, typically by chewing angular pieces off leaves. They may also feed on the panicle near the developing kernels causing these kernels to dry before filling. This feeding causes all or parts of the panicle to turn white. If the entire panicle is white, the damage may also be due to stem rot or feeding by rats. The seriousness of armyworm injury depends on the maturity of the plant and the amount of tissue consumed. Significant yield reduction can occur if defoliation is greater than 25% at 2 to 3 weeks before heading. They migrate from field to field and extensive losses are often caused within a week. Their migration is facilitated by the absence of standing water in the field. armyworm resistance Causal agent: Pseudaletia unipuncta, Spodoptera mauritia and Spodoptera praefica. The swarming caterpillars cause severe damage to rice plants in nursery beds. Gramene:pankaj_jaiswal http://pne.gsnu.ac.kr/riceipm/spodopte.htm http://www.ipm.ucdavis.edu/PMG/r682300411.html A flower morphology trait (TO:0000499) which is a quality of a spikelet floret (PO:0009082). TO_GIT:105 plant_trait_ontology floret related trait (related) TO:0000274 spikelet floret morphology trait A flower morphology trait (TO:0000499) which is a quality of a spikelet floret (PO:0009082). Gramene:pankaj_jaiswal TO:cooperl TO:moorel A collective phyllome structure morphology trait (TO:0000845) which is a quality of a perianth (PO:0009058). TO_GIT:105 TO_GIT:306 plant_trait_ontology perianth related trait (related) TO:0000275 perianth morphology trait A collective phyllome structure morphology trait (TO:0000845) which is a quality of a perianth (PO:0009058). Gramene:pankaj_jaiswal PO:0009058 TO:cooperl TO:moorel Becoming tolerant to drought like conditions of minimal or no water content in the growth environment. drought resistance (exact) plant_trait_ontology DRTL (related) TO:0000276 Often the plants exhibiting high salt tolerance also exhibit drought tolerance. drought tolerance Becoming tolerant to drought like conditions of minimal or no water content in the growth environment. Gramene:pankaj_jaiswal A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012). plant_trait_ontology TO:0000277 biochemical trait A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012). Gramene:pankaj_jaiswal TO:cooperl The ratio determined from the parameters evaluated for root length and the shoot length in a study. RTSHRO (exact) r/s ratio (exact) root length to shoot length ratio (exact) root/shoot ratio (exact) plant_trait_ontology TO:0000278 root to shoot ratio The ratio determined from the parameters evaluated for root length and the shoot length in a study. Gramene:pankaj_jaiswal A root morphology trait (TO:0000043) which is the weight of a root (PO:0009005). plant_trait_ontology RTWT (related) TRW (related) total root weight (related) TO:0000279 Root weight may be measured as the average dry or fresh weight of roots. root weight A root morphology trait (TO:0000043) which is the weight of a root (PO:0009005). Gramene:pankaj_jaiswal Represents the seedling growth of the plant. plant_trait_ontology SDLVIG (related) Sd (related) TO:0000280 seedling vigor Represents the seedling growth of the plant. IRRI:SES The trait associated with an assay to determine the affected metabolite's profile. plant_trait_ontology TO:0000281 metabolite content trait The trait associated with an assay to determine the affected metabolite's profile. Gramene:pankaj_jaiswal OBSOLETE: The trait associated with an assay to determine the effected enzymatic activity and protein content. plant_trait_ontology TO:0000282 enzymatic activity and protein content related trait true OBSOLETE: The trait associated with an assay to determine the effected enzymatic activity and protein content. Gramene:pankaj_jaiswal A plant trait (TO:0000387) which is a process quality (PATO:0001236) of a biological process (GO:0008150) which occurs in a plant anatomical entity (PO:0025131), a cellular component (GO:0005575), or during a plant structure development stage (PO:0009012). TO:0000349 TO_GIT:378 physiological process trait (exact) plant_trait_ontology TO:0000283 Refers to process quality (PATO:0001236): A quality which inheres in an process. biological process trait A plant trait (TO:0000387) which is a process quality (PATO:0001236) of a biological process (GO:0008150) which occurs in a plant anatomical entity (PO:0025131), a cellular component (GO:0005575), or during a plant structure development stage (PO:0009012). GO:0008150 Gramene:pankaj_jaiswal TO:cooperl Catalysis of the reaction: ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose. plant_trait_ontology ADP-glucose pyrophosphorylase (related) ADP-glucose synthase (related) ADP-glucose synthetase (related) ADPG pyrophosphorylase (related) AGPACT (related) adenosine diphosphate glucose pyrophosphorylase (related) adenosine diphosphoglucose pyrophosphorylase (related) glucose 1-phosphate adenylyltransferase (related) glucose-1-phosphate adenylyltransferase activity (related) TO:0000284 ADP glucose pyrophosphorylase activity trait Catalysis of the reaction: ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose. EC:2.7.7.27 GO:0008878 plant_trait_ontology TO:0000285 nodal tillering Measure of sensitivity of a plant if placed under submergence condition. plant_trait_ontology SUBSN (related) Sub (related) submergence tolerance (related) TO:0000286 submergence sensitivity Measure of sensitivity of a plant if placed under submergence condition. IIRRI:SES A grain shape (TO:0002730) of the brown rice. Measure after harvesting, cleaning, and dehulling. PATO:0000052 plant_trait_ontology BRWSHP (related) BrS (related) TO:0000287 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). brown rice shape A grain shape (TO:0002730) of the brown rice. Measure after harvesting, cleaning, and dehulling. IRRI:SES TO:moorel An amylase activity trait (TO:0000703) which is the quality of the endohydrolysis of 1,4-a-D-glucosidic linkages in polysaccharides containing three or more 1,4-a-linked D-glucose units. plant_trait_ontology ALPHAAMYASEACT (related) Amy (related) alpha amylase (related) endoamylase (related) glycogenase (related) taka-amylase A (related) TO:0000288 alpha-amylase activity trait An amylase activity trait (TO:0000703) which is the quality of the endohydrolysis of 1,4-a-D-glucosidic linkages in polysaccharides containing three or more 1,4-a-linked D-glucose units. EC:3.2.1.1 GO:0004556 A carotenoid content trait (TO:0000496) which is the amount of carotene (CHEBI:23042) in a plant structure (PO:0009011). CHEBI:23042 TO_GIT:24 plant_trait_ontology TO:0000289 Carotenes are a group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants, and unlike the xanthophylls, do not contain any oxygen. carotene content A carotenoid content trait (TO:0000496) which is the amount of carotene (CHEBI:23042) in a plant structure (PO:0009011). Gramene:pankaj_jaiswal ISBN:198506732 TO:cooperl A phytochemical compound content trait (TO:0000674) which is the amount of flavonoid (CHEBI:47916) in a plant structure (PO:0009011). CHEBI:47916 plant_trait_ontology TO:0000290 Flavonoids are water soluble polyphenolic molecules containing 15 carbon atoms. Flavonoids belong to the polyphenol family and have antioxidant activity. flavonoid content A phytochemical compound content trait (TO:0000674) which is the amount of flavonoid (CHEBI:47916) in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl A metabolite content trait (TO:0000281) which is the amount of carbohydrate (CHEBI:16646) in a plant structure (PO:0009011). CHEBI:16646 plant_trait_ontology CARBCN (related) TO:0000291 carbohydrate content A metabolite content trait (TO:0000281) which is the amount of carbohydrate (CHEBI:16646) in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl Causal agent: Mycoplasma. Symptoms: pale yellow, droopy leaves, excessive tillering and stunting. plant_trait_ontology YD (related) YDRS (related) TO:0000292 yellow dwarf disease resistance Causal agent: Mycoplasma. Symptoms: pale yellow, droopy leaves, excessive tillering and stunting. Gramene:pankaj_jaiswal IRRI:SES A chlorophyll content trait (TO:0000495) which is the chlorophyll a content in a plant structure (PO:0009011). Chl a (exact) chl-a (exact) chlorophyll-a content (exact) plant_trait_ontology TO:0000293 chlorophyll a content A chlorophyll content trait (TO:0000495) which is the chlorophyll a content in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl A leaf sheath auricle morphology trait (TO:0002717) which is the color of a leaf sheath auricle (PO:0020106). PATO:0000014 plant_trait_ontology AC (related) AUCL (related) TO:0000294 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. leaf sheath auricle color A leaf sheath auricle morphology trait (TO:0002717) which is the color of a leaf sheath auricle (PO:0020106). IRRI:SES PO:0020106 TO:cooperl A chlorophyll content trait (TO:0000495) which is the chlorophyll b content in a plant structure (PO:0009011). chl b content (exact) chl-b content (exact) chlorophyll-b content (exact) plant_trait_ontology TO:0000295 chlorophyll b content A chlorophyll content trait (TO:0000495) which is the chlorophyll b content in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl Represents the growth of plant. Used to evaluate genetic material under stress and non-stress conditions, several factors may interact, influencing the seedling vigor (e.g. tillering ability, plant height, etc). plant_trait_ontology VGVIG (related) Vg (related) vegetative growth vigor (related) TO:0000296 vegetative vigor Represents the growth of plant. Used to evaluate genetic material under stress and non-stress conditions, several factors may interact, influencing the seedling vigor (e.g. tillering ability, plant height, etc). Gramene:pankaj_jaiswal An oligosaccharide content (TO:0006003) which is the amount of glucosamine (CHEBI:5417) in a plant structure (PO:0009011). CHEBI:5417 Gramene:pankaj_jaiswal ISBN:198506732 plant_trait_ontology 2-amino-2-deoxyglucopyranose content (related) GLUCNCN (related) TO:0000297 It is one of the most abundant natural polysaccharide. glucosamine content A chlorophyll content trait (TO:0000495) which is the ratio of chlorophyll a to chlorophyll b in a plant structure (PO:0009011). chl a to chl b ratio (exact) chl-a to chl-b ratio (exact) chlorophyll content ratio (exact) plant_trait_ontology CHLRO (related) TO:0000298 The average ratio of chl a to chl b is about 3:1. chlorophyll ratio A chlorophyll content trait (TO:0000495) which is the ratio of chlorophyll a to chlorophyll b in a plant structure (PO:0009011). ISBN:198506732 TO:cooperl A leaf lamina morphology trait (TO:0000829) which is the color of the leaf lamina (PO:0020039). PATO:0000014 plant_trait_ontology LBC (related) LFLCL (related) leaf blade color (related) leaf color (related) TO:0000299 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. leaf lamina color A leaf lamina morphology trait (TO:0000829) which is the color of the leaf lamina (PO:0020039). IRRI:SES PO:0020039 TO:moorel Amount of glucose present in the plant or plant part. plant_trait_ontology D-glucose content (related) GLUCCN (related) dextrose content (related) TO:0000300 It is a common monosaccharide that is a component of oligo/disaccharides (sucrose, lactose, and maltose) and various complex carbohydrates. glucose content Amount of glucose present in the plant or plant part. Gramene:pankaj_jaiswal The xanthophyll content in a plant or plant part. plant_trait_ontology XANCN (related) TO:0000301 These are any group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants and contain oxygen in various forms. xanthophyll content The xanthophyll content in a plant or plant part. ISBN:198506732 OBSOLETE. plant_trait_ontology TO:0000302 smut disease true Tolerance to cold temperatures if plant is exposed to below permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages. plant_trait_ontology COLDTL (related) CTol (related) TO:0000303 cold tolerance Tolerance to cold temperatures if plant is exposed to below permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages. Gramene:pankaj_jaiswal IRRI:SES A seed morphology trait (TO:0000184) which is the thickness of a seed (PO:0009010). PATO:0000915 TO_GIT:197 plant_trait_ontology SDTH (related) TO:0000304 Seed thickness is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. seed thickness A seed morphology trait (TO:0000184) which is the thickness of a seed (PO:0009010). Gramene:pankaj_jaiswal PO:0009010 TO:moorel Catalysis of the reaction: ATP + L-glutamate + ammonia = ADP + phosphate + L-glutamine. plant_trait_ontology GS1 (related) GS1CN (related) L-glutamine synthetase (related) glutamate-ammonia ligase (related) glutamylhydroxamic synthetase (related) TO:0000305 glutamine synthetase content Catalysis of the reaction: ATP + L-glutamate + ammonia = ADP + phosphate + L-glutamine. EC:6.3.1.2 GO:0004356 A root morphology trait (TO:0000043) which is the thickness of a root (PO:0009005). plant_trait_ontology RTTH (related) TO:0000306 Root thickness may be calculated as an average of several roots. root thickness A root morphology trait (TO:0000043) which is the thickness of a root (PO:0009005). Gramene:jcl Gramene:pankaj_jaiswal TO:cooperl Amount of hexose present in the plant or plant part. plant_trait_ontology HEXCN (related) TO:0000307 Hexose is any aldose having a chain of six carbon atoms in a molecule. hexose content Amount of hexose present in the plant or plant part. ISBN:198506732 Describes the extent of fertile pollen percentage. Also refers to male sterility-measure (extent of sterility). plant_trait_ontology MALERF (related) male fertility restoration in F1 hybrids (related) TO:0000308 male fertility restoration trait Describes the extent of fertile pollen percentage. Also refers to male sterility-measure (extent of sterility). Gramene:pankaj_jaiswal IRRI:SES true Self-incompatibility allows plants to recognize and reject pollen from the same plant, thereby reducing inbreeding. plant_trait_ontology Genetic self-incompatibility (related) TO:0000310 In most cases self-incompatibility is controlled by a single genetic locus, recent results show that complex signal transduction pathways and many players are involved in pollen recognition and rejection. self-incompatibility Self-incompatibility allows plants to recognize and reject pollen from the same plant, thereby reducing inbreeding. PMID:10066554 Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. plant_trait_ontology INVACT (related) acid invertase (related) alkaline invertase (related) beta-D-fructofuranoside fructohydrolase (related) beta-fructofuranosidase activity (related) beta-fructosidase (related) beta-h-fructosidase (related) fructosylinvertase (related) glucosucrase (related) invertin (related) maxinvert L 1000 (related) saccharase (related) sucrase (related) TO:0000311 invertase activity trait Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. EC:3.2.1.26 GO:0004564 Catalysis of the reaction: 2 L-glutamate + NAD+ = L-glutamine + 2-oxoglutarate + NADH + H+. plant_trait_ontology L-glutamate synthase (NADH) (related) L-glutamate synthetase (related) NADH-dependent glutamate synthase (related) NADH-glutamate synthase (related) NADHGOGATCN (related) glutamate (reduced nicotinamide adenine dinucleotide) synthase (related) glutamate synthase (NADH) activity (related) glutamate synthase (NADH2) (related) TO:0000312 NADH glutamate synthase content Catalysis of the reaction: 2 L-glutamate + NAD+ = L-glutamine + 2-oxoglutarate + NADH + H+. EC:1.4.1.14 GO:0016040 Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. plant_trait_ontology P71CN (related) TO:0000313 perodidase-71 content Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. EC:1.11.1.7 GO:0004601 Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate. plant_trait_ontology PGAM (related) PGAMCN (related) TO:0000314 phosphoglycerate mutase content Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate. EC:5.4.2.1 GO:0004619 The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species. plant_trait_ontology TO:0000315 It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease. bacterial disease resistance The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal The photosynthesis ability determined on a plant or the plant part under stress. plant_trait_ontology PHOTOSYNAB (related) TO:0000316 Methods may include actual measurements on photosynthesis, pigment content or the content and composition of enzymes associated with photosynthesis. photosynthetic ability The photosynthesis ability determined on a plant or the plant part under stress. Gramene:pankaj_jaiswal Causal agent: Spodoptera litura. plant_trait_ontology CUWRRS (related) TO:0000317 cutworm resistance Causal agent: Spodoptera litura. Gramene:pankaj_jaiswal Amount of reducing sugar present in the plant or plant part. plant_trait_ontology REDSUGCN (related) TO:0000318 A reducing sugar is any sugar which in basic solution forms contain aldehyde or ketone groups that are oxidised to carboxylic acids. reducing sugar content Amount of reducing sugar present in the plant or plant part. Gramene:pankaj_jaiswal Amount of Rubisco enzyme or protein present in a given plant or the plant part. plant_trait_ontology RUBISCOCN (related) TO:0000319 rubisco content Amount of Rubisco enzyme or protein present in a given plant or the plant part. Gramene:pankaj_jaiswal A chlorophyll content trait (TO:0000495) which is ratio of the amount of RuBisCo protein to that of the chlorophyll content (TO:0000495) in a plant strucure (PO:0009011). plant_trait_ontology RUBISCOCHLRO (related) TO:0000320 chlorophyll to rubisco ratio A chlorophyll content trait (TO:0000495) which is ratio of the amount of RuBisCo protein to that of the chlorophyll content (TO:0000495) in a plant strucure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl A ratio of the amount of rubisco protein to that of the total nitrogen content in a plant or plant part. plant_trait_ontology RUBISCONICNRO (related) TO:0000321 rubisco to nitrogen content ratio A ratio of the amount of rubisco protein to that of the total nitrogen content in a plant or plant part. Gramene:pankaj_jaiswal A plant quality trait (TO:0000597) which is the evaluation of whether the plant phenotype is meeting the breeding objectives. plant_trait_ontology PAcp (related) overall liking (related) TO:0000322 Breeding objectives vary for each trait and variety. The evaluation should reflect the overall acceptability of the variety. phenotypic acceptability A plant quality trait (TO:0000597) which is the evaluation of whether the plant phenotype is meeting the breeding objectives. IRRI:SES TO:cooperl Causal agent: Magnaporthe salvinii (Nakataea sigmoidea, Sclerotium oryzae), and Helminthosporium sigmoideum var. irregulare. Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging. plant_trait_ontology CULMROTRS (related) SR (related) TO:0000323 stem rot disease resistance Causal agent: Magnaporthe salvinii (Nakataea sigmoidea, Sclerotium oryzae), and Helminthosporium sigmoideum var. irregulare. Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging. Gramene:pankaj_jaiswal IRRI:SES A ratio of the amount of rubisco protein to that of the soluble protein content in a plant or plant part. plant_trait_ontology RUBISCOSPROTRO (related) TO:0000324 rubisco to soluble protein ratio A ratio of the amount of rubisco protein to that of the soluble protein content in a plant or plant part. Gramene:pankaj_jaiswal Amount of the soluble protein present in the plant or the plant part. plant_trait_ontology SPROTCN (related) TO:0000325 soluble protein content Amount of the soluble protein present in the plant or the plant part. Gramene:pankaj_jaiswal A leaf morphology trait (TO:0000748) which is the color of a leaf (PO:0025034). jaiswalp PATO:0000014 plant_trait_ontology LFCL (related) TO:0000326 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf color A leaf morphology trait (TO:0000748) which is the color of a leaf (PO:0025034). Gramene:pankaj_jaiswal PO:0025034 TO:cooperl A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested. TO_GIT:289 plant_trait_ontology BIOMYLD (related) BY (related) TO:0000327 shoot system yield trait A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested. ISBN:0198506732 TO:cooperl The amount of sucrose present in the plant or the plant part. plant_trait_ontology SUCROSECN (related) saccharose content (related) TO:0000328 sucrose content The amount of sucrose present in the plant or the plant part. Gramene:pankaj_jaiswal Degree of tillering is affected by variety, spacing of plants in the field, season of planting, and environmental conditions e.g. nitrogen levels. plant_trait_ontology TIAB (related) Ti (related) TO:0000329 tillering ability Degree of tillering is affected by variety, spacing of plants in the field, season of planting, and environmental conditions e.g. nitrogen levels. Gramene:pankaj_jaiswal ISBN:9712200299 It is a measure of percent seed set on the out-pollinated primary panicle. plant_trait_ontology extent of outcrossing (related) extent of outcrossing on male sterile lines (related) TO:0000330 . outcrossing potential It is a measure of percent seed set on the out-pollinated primary panicle. Gramene:pankaj_jaiswal IRRI:SES Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate. plant_trait_ontology SPS (related) SPSACT (related) UDP-glucose-fructose-phosphate glucosyltransferase (related) sucrose 6-phosphate synthase (related) sucrose phosphate synthetase (related) sucrose phosphate-uridine diphosphate glucosyltransferase (related) sucrose-phosphate synthase activity (related) sucrosephosphate-UDP glucosyltransferase (related) uridine diphosphoglucose-fructose phosphate glucosyltransferase (related) TO:0000331 sucrose phosphate synthase activity trait Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate. EC:2.4.1.14 GO:0046524 Causal agent: Hydrellia philippina. Symptoms: Leaf margin feeding causes conspicuous damage and sometimes stunting of plants. plant_trait_ontology RWM (related) RWMRS (related) TO:0000332 rice whorl maggot resistance Causal agent: Hydrellia philippina. Symptoms: Leaf margin feeding causes conspicuous damage and sometimes stunting of plants. Gramene:pankaj_jaiswal IRRI:SES Amount of sugar present in the plant or the plant part. plant_trait_ontology SUGARCN (related) TO:0000333 sugar content Amount of sugar present in the plant or the plant part. Gramene:pankaj_jaiswal OBSOLETE. plant_trait_ontology parental line evaluation (related) TO:0000334 hybrid evaluation true A ligule morphology trait (TO:0002748) which is the actual shape of the ligule (PO:0020105). PATO:0000052 plant_trait_ontology LIGSHP (related) LS (related) TO:0000335 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). ligule shape A ligule morphology trait (TO:0002748) which is the actual shape of the ligule (PO:0020105). IRRI:SES PO:0020105 TO:cooperl A combined activity of both the alpha and beta amylase enzymes. plant_trait_ontology TAMYASEACT (related) amylase activity (related) TO:0000336 total amylase activity trait A combined activity of both the alpha and beta amylase enzymes. EC:3.2.1.- GO:0016160 Gramene:pankaj_jaiswal Represents the angle of the tiller in the submerged water fields (flash flooding). plant_trait_ontology KNEAB (related) KnA (related) tiller angle (related) TO:0000337 Less is the tiller angle compared to water surface the least is the chance of plant's survivability. kneeing ability Represents the angle of the tiller in the submerged water fields (flash flooding). IRRI:SES An amylase activity trait (TO:0000703) which is the quality of the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains. plant_trait_ontology BETAAMYASEACT (related) TO:0000338 beta-amylase activity trait An amylase activity trait (TO:0000703) which is the quality of the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains. EC:3.2.1.2 GO:0016161 A stem morphology trait (TO:0000361) which is the thickness of a stem (PO:0009047). TO:0000535 plant_trait_ontology CULMTH (related) STEMTH (related) culm thickness (related) culm thickness (sensu Poaceae) (related) TO:0000339 stem thickness A stem morphology trait (TO:0000361) which is the thickness of a stem (PO:0009047). Gramene:pankaj_jaiswal TO:cooperl Total amount of soluble sugar present in the plant or plant part. plant_trait_ontology TSOLSUGARCN (related) TO:0000340 total soluble sugar content Total amount of soluble sugar present in the plant or plant part. Gramene:pankaj_jaiswal OBSOLETE. A plant genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed plant species which is genetically linked to a physical or genetic marker TO:0000005 plant_trait_ontology obsolete trait term (related) TO:0000341 plant genetic trait true OBSOLETE. A plant genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed plant species which is genetically linked to a physical or genetic marker Gramene:pankaj_jaiswal Represents the angle of panicle axis. plant_trait_ontology PnAk (related) TO:0000342 panicle axis angle Represents the angle of panicle axis. IRRI:SES A common grass weed Echinochloa glabbrescens or Echinochloa crus-galli (Barnyard grass), Typha spp. (Cattails), Leptochloa fascicularis (Bearded sprangletop) grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape. plant_trait_ontology TO:0000343 grass weed A common grass weed Echinochloa glabbrescens or Echinochloa crus-galli (Barnyard grass), Typha spp. (Cattails), Leptochloa fascicularis (Bearded sprangletop) grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape. Gramene:pankaj_jaiswal ISBN:9712200299 http://www.ipm.ucdavis.edu/PMG/r682700999.html A flowering time trait (TO:0002616) which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence). TO_GIT:269 days to flowering (exact) Delay in flowering time (narrow) plant_trait_ontology DTFL (related) TO:0000344 Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower. days to flowering trait A flowering time trait (TO:0002616) which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence). Gramene:pankaj_jaiswal TO:cooperl plant_trait_ontology SDVIA (related) TO:0000345 seed viability Number of tillers per plant, should represent most plants within a study. plant_trait_ontology TINB (related) TO:0000346 tiller number Number of tillers per plant, should represent most plants within a study. IRRI:SES Weeds reduce the yield regardless of planting season. They compete for sunlight, nutrients and water. If any of these is lacking, the others cannot be used effectively, even if a lot are present. Thus, the competition results in poor plant growth and less yield. plant_trait_ontology TO:0000347 weed damage Weeds reduce the yield regardless of planting season. They compete for sunlight, nutrients and water. If any of these is lacking, the others cannot be used effectively, even if a lot are present. Thus, the competition results in poor plant growth and less yield. Gramene:pankaj_jaiswal ISBN:9712200299 Causal agent: Sogatodes orizicola (Muir), Sagotella furcifera and Sogatodes cubanus. Sogatodes orizicola is also a vector for the Rice black streaked dwarf fijivirus and rice hoja blanca virus (RHBV). plant_trait_ontology SAGRS (related) TO:0000348 sogatodes resistance Causal agent: Sogatodes orizicola (Muir), Sagotella furcifera and Sogatodes cubanus. Sogatodes orizicola is also a vector for the Rice black streaked dwarf fijivirus and rice hoja blanca virus (RHBV). Gramene:pankaj_jaiswal true Abortion of microspore development at bi-nucleate stage. plant_trait_ontology CMS-HL (related) HLCMS (related) TO:0000350 cms-hl type Abortion of microspore development at bi-nucleate stage. Gramene:pankaj_jaiswal IRRI:SES Sensitivity to the zinc content in the growth medium. It acts as cofactor for certain enzymes like Class II aldolases, metalloproteases, alkaline phosphatase, etc. plant_trait_ontology PDef (related) ZNSN (related) zinc deficiency (related) TO:0000351 zinc sensitivity Sensitivity to the zinc content in the growth medium. It acts as cofactor for certain enzymes like Class II aldolases, metalloproteases, alkaline phosphatase, etc. Gramene:pankaj_jaiswal IRRI:SES The dry weight of the whole plant. plant_trait_ontology DMASS (related) PTDWT (related) RTWT (related) dry mass (related) total dry mass (related) TO:0000352 plant dry weight The dry weight of the whole plant. Gramene:pankaj_jaiswal37 Abortion at later stage of microspore development, the pollen looks like fertile pollen. plant_trait_ontology PMTABR (related) TO:0000353 aborted at pollen maturity stage Abortion at later stage of microspore development, the pollen looks like fertile pollen. Gramene:pankaj_jaiswal IRRI:SES Sensitivity to aluminum content in the growth media. aluminium sensitivity (exact) plant_trait_ontology ALSN (related) aluminum toxicity (related) TO:0000354 aluminum sensitivity Sensitivity to aluminum content in the growth media. Gramene:pankaj_jaiswal Exceptional vigor of growth etc. in plants or in animal, resulting from cross breeding among inter or intra species. plant_trait_ontology HET (related) heterosis in f1 hybrid (related) hybrid vigor (related) TO:0000355 heterosis Exceptional vigor of growth etc. in plants or in animal, resulting from cross breeding among inter or intra species. Gramene:pankaj_jaiswal Causal agent: Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae). Symptom: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have same color on the edges but have a pale (usually grayish) center. Most spots have a light yellow halo around the outer edge. plant_trait_ontology BS (related) TO:0000356 brown spot disease resistance Causal agent: Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae). Symptom: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have same color on the edges but have a pale (usually grayish) center. Most spots have a light yellow halo around the outer edge. Gramene:pankaj_jaiswal IRRI:SES A plant trait (TO:0000387) which is the growth (GO:0048590) and development (GO:0032502) of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575). jaiswalp GO:0032502 GO:0048590 TO_GIT:248 plant_trait_ontology TO:0000357 Growth and development traits are qualities of the development of the whole plant or plant parts. plant growth and development trait A plant trait (TO:0000387) which is the growth (GO:0048590) and development (GO:0032502) of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575). Gramene:pankaj_jaiswal TO:cooperl plant_trait_ontology FEMST (related) TO:0000358 female sterility A flowering time trait which is the timing of the flowering (anthesis) of female flowers. plant_trait_ontology DTSLK (related) FEMFLW (related) FFLW (related) Female flower anthesis (related) Female flower flowering (related) days to silk (related) TO:0000359 Ofetn influenced by the environemnt that includes, day light, temperature and geographic location. female flowering A flowering time trait which is the timing of the flowering (anthesis) of female flowers. Gramene:pankaj_jaiswal Measure of growth or elongation rate of the leaf in a plant. plant_trait_ontology LFELRATE (related) leaf growth rate (related) TO:0000360 leaf elongation rate Measure of growth or elongation rate of the leaf in a plant. Gramene:pankaj_jaiswal A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047). TO_GIT:157 core morphology trait (narrow) plant_trait_ontology TO:0000361 stem morphology trait A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047). Gramene:pankaj_jaiswal PO:0009047 TO:moorel OBSOLETE. plant_trait_ontology TO:0000362 rot disease true true Changes monitored in leaf collar color. plant_trait_ontology CC (related) LFCCL (related) collar color (related) TO:0000364 leaf collar color Changes monitored in leaf collar color. IRRI:SES A flowering time trait (TO:0002616) which is the timing of the flowering (anthesis) of male flowers. plant_trait_ontology MALEFLW (related) MFLW (related) male flower anthesis (related) male flower flowering (related) TO:0000365 Often influenced by the environment that includes, daylight, temperature and geographic location. male flowering A flowering time trait (TO:0002616) which is the timing of the flowering (anthesis) of male flowers. Gramene:pankaj_jaiswal Measure of time taken by the reproductive growth phase in a plant's life cycle. plant_trait_ontology RGTM (related) TO:0000366 reproductive growth time Measure of time taken by the reproductive growth phase in a plant's life cycle. Gramene:pankaj_jaiswal The changes in the color of basal leaf sheath. plant_trait_ontology BALFSCL (related) BLSC (related) TO:0000367 basal leaf sheath color The changes in the color of basal leaf sheath. IRRI:SES plant_trait_ontology SHELRATE (related) elongation of plant height (related) TO:0000368 shoot elongation rate Measure of the vegetative growth phase time in a plant's life cycle. plant_trait_ontology VGTM (related) TO:0000369 vegetative growth time Measure of the vegetative growth phase time in a plant's life cycle. Gramene:pankaj_jaiswal A leaf morphology trait (TO:0000748) which is the width of a leaf (PO:0025034). MaizeGDB_QTL:61714 PATO:0000921 TO_GIT:247 plant_trait_ontology LFWD (related) LW (related) lfwid (related) TO:0000370 Actual measurements, in centimeters of the widest portion of the leaf. To be precise use the children terms leaf lamina width (TO:0002720) or 'leaf sheath width (TO:0002721). Refers to width (PATO:0000921) A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf width A leaf morphology trait (TO:0000748) which is the width of a leaf (PO:0025034). IRRI:SES PO:0025034 TO:cooperl TO:moorel lfwid (related) MaizeGDB_QTL:61714 A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein. plant_trait_ontology YLD (related) TO:0000371 yield trait A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein. Gramene:pankaj_jaiswal TO:cooperl Ratio of amount of amylose to amylopectin content. plant_trait_ontology AMYAMYPCTRO (related) TO:0000372 amylose to amylopectin ratio Ratio of amount of amylose to amylopectin content. Gramene:pankaj_jaiswal A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049). TO:0000363 TO:0000584 TO:0000585 TO_GIT:92 TO_GIT:97 Head morphology trait (narrow) plant_trait_ontology inflorescence structure trait (related) TO:0000373 inflorescence morphology trait A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 A cooking quality trait that is the tendency of gelatinized starch granules to break during cooking, especially at high temperature. plant_trait_ontology BRKVIS (related) TO:0000374 Breakdown is usually associated with the tendency of gelatinized starch granules to break during holding at high temperature, accompanied with continuous shearing (Han and Hamaker 2001). Breakdown is usually calculated from a resulting viscogram by subtracting trough from peak viscosity. The increase in rice flour breakdown viscosity, although not always significant (P < 0.05), suggests a greater protection of the starch granule integrity. This probably is due to the increased affinity of proteins to interact with starch, as a result of protein denaturation. The resulting formation of protein–starch complexes tends to increase rice flour peak viscosity. breakdown viscosity A cooking quality trait that is the tendency of gelatinized starch granules to break during cooking, especially at high temperature. PMCID:PMC434838 TO:cooperl Breakdown is usually associated with the tendency of gelatinized starch granules to break during holding at high temperature, accompanied with continuous shearing (Han and Hamaker 2001). Breakdown is usually calculated from a resulting viscogram by subtracting trough from peak viscosity. The increase in rice flour breakdown viscosity, although not always significant (P < 0.05), suggests a greater protection of the starch granule integrity. This probably is due to the increased affinity of proteins to interact with starch, as a result of protein denaturation. The resulting formation of protein–starch complexes tends to increase rice flour peak viscosity. PMCID:PMC434838 A grain length to width ratio (TO:0002731) which is determined from grain length and grain width on dehulled unpolished rice grain. PATO:0000117 PATO:0000122 PATO:0000921 plant_trait_ontology BRWRRO (related) brown rice length to width ratio (related) TO:0000375 Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. brown rice length to width ratio A grain length to width ratio (TO:0002731) which is determined from grain length and grain width on dehulled unpolished rice grain. Gramene:pankaj_jaiswal TO:moorel plant_trait_ontology CONVIS (related) TO:0000376 consistency viscosity plant_trait_ontology CKKEL (related) cooked kernel elongation (related) TO:0000377 cooked grain elongation Causal agent: Monographella albescens (Microdochium oryzae). Symptoms: the lesions occurs mostly near leaf tips, but sometimes start at the margin of the blade and develops into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo. plant_trait_ontology LFSRS (related) LSc (related) TO:0000378 leaf scald disease resistance Causal agent: Monographella albescens (Microdochium oryzae). Symptoms: the lesions occurs mostly near leaf tips, but sometimes start at the margin of the blade and develops into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo. Gramene:pankaj_jaiswal IRRI:SES plant_trait_ontology CPVIS (related) TO:0000379 cool paste viscosity OBSOLETE. plant_trait_ontology TO:0000380 planthopper true The percentage of cracked dehulled grain with most of the size still intact. plant_trait_ontology CRKGRPCENT (related) fissured grain percentage (related) TO:0000381 cracked grain percentage The percentage of cracked dehulled grain with most of the size still intact. Gramene:pankaj_jaiswal A grain weight (TO:0000919) which is the weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000). TO:0000533 1000-grain weight (exact) TGRWT (exact) thousand grain weight (exact) plant_trait_ontology TSDWT (related) thousand seed weight (related) TO:0000382 Thousand grain weights are measured in grams, on a precision balance, on 1000 well-developed whole grains (with the caryopsis hull; PO:0006000), dried to 13% moisture content. 1000-grain weight A grain weight (TO:0000919) which is the weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000). Gramene:pankaj_jaiswal Percentage opaque white area in the kernel belly. plant_trait_ontology GRBPCENTWHT (related) TO:0000383 grain belly percent white Percentage opaque white area in the kernel belly. Gramene:pankaj_jaiswal An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to nematode infestation as compared to the susceptible and/or the reference plants of the same species. plant_trait_ontology NDRS (related) TO:0000384 nematode damage resistance An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to nematode infestation as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal A grain color (TO:0002617) trait which is the color of dehulled, milled grain (caryopsis fruit; PO:0030104). PATO:0000014 plant_trait_ontology GRCL (related) MGRCL (related) TO:0000385 Dehulled, milled grains have had the caryopsis hull (PO:0006000) removed, as well as the pericarp (PO:0009084), aleurone layer (PO:0005360) and germ (plant embryo; PO:0009009). Refers to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. milled grain color A grain color (TO:0002617) trait which is the color of dehulled, milled grain (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal PATO:0000014 TO:cooperl TO:moorel Causal agent: rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths. plant_trait_ontology RSVRS (related) TO:0000386 rice ragged stunt virus resistance Causal agent: rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths. Gramene:pankaj_jaiswal, IRRI:SES A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012). jaiswalp TO_GIT:52 plant_trait_ontology plant phenotype (related) plant quality (related) TO:0000387 This includes physiological, molecular and biochemical traits as well. plant trait A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012). GO:0003674 GO:0005575 GO:0008150 Gramene:pankaj_jaiswal PO:0009012 PO:0025131 TO:cooperl Yield of forage matter upon harvest. plant_trait_ontology FRGYLD (related) FY (related) straw yield (related) TO:0000388 forage yield Yield of forage matter upon harvest. Gramene:pankaj_jaiswal Shows mendelian inheritance, caused by genetic modifications or mutations in the nuclear genome. scale:6 plant_trait_ontology TO:0000389 nuclear mediated male sterility Shows mendelian inheritance, caused by genetic modifications or mutations in the nuclear genome. Gramene:pankaj_jaiswal IRRI:SES Percentage opaque white area in the kernel core. plant_trait_ontology GRCPCENTWHT (related) TO:0000390 grain core percent white Percentage opaque white area in the kernel core. Gramene:pankaj_jaiswal A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010). PATO:0000117 TO_GIT:183 plant_trait_ontology TO:0000391 Seed size is determined by the ratio of the seed length to seed width and is a component of seed quality (TO:0000162). Seed size may be a qualitative measure or may be organized into categories ranging from small to medium to large. Refers to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. seed size A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010). Gramene:pankaj_jaiswal PO:0009010 TO:cooperl A plant trait (TO:0000387) which is a measure of either the fertility or sterility, contributed by nonfunctional male and or female plant parts or their incompatible interaction. This also includes traits on seed setting behavior in the fruit (caryopsis) of a grass plant that can be assayed in terms of spikelet sterility or fertility. plant_trait_ontology TO:0000392 sterility or fertility trait A plant trait (TO:0000387) which is a measure of either the fertility or sterility, contributed by nonfunctional male and or female plant parts or their incompatible interaction. This also includes traits on seed setting behavior in the fruit (caryopsis) of a grass plant that can be assayed in terms of spikelet sterility or fertility. Gramene:pankaj_jaiswal OBSOLETE. plant_trait_ontology TO:0000393 yield and yield component true Response by the plant in terms of sensitivity to sufficiently prolonged water deficit/scarcity or scanty water content in the soil or growth medium, that can cause damage to the plant. plant_trait_ontology dessication related trait (related) TO:0000394 drought related trait Response by the plant in terms of sensitivity to sufficiently prolonged water deficit/scarcity or scanty water content in the soil or growth medium, that can cause damage to the plant. Gramene:pankaj_jaiswal true A fruit yield trait (TO:0000871) that is the amount of grain. TO_GIT:242 plant_trait_ontology GRYLD (related) Yld (related) TO:0000396 In rice, the grain yield is often measured in kilograms per hectare at 14 percent moisture, if the experiment was done on a field trial. grain yield trait A fruit yield trait (TO:0000871) that is the amount of grain. IRRI:SES TO:contributors TO:cooperl A caryopsis fruit morphology trait (TO:0001079) which is the size of the grain (caryopsis fruit; PO:0030104). GRSZ (exact) plant_trait_ontology TO:0000397 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. grain size A caryopsis fruit morphology trait (TO:0001079) which is the size of the grain (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal PO:0009084 TO:moorel A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003). plant_trait_ontology TO:0000398 whole plant morphology trait A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003). PO:0000003 TO:cooperl A grain quality trait (TO:0000399) which is the thickness of a dehulled grain with a pericarp (PO:0009084). TO_GIT:264 plant_trait_ontology GRTH (related) TO:0000399 grain thickness A grain quality trait (TO:0000399) which is the thickness of a dehulled grain with a pericarp (PO:0009084). Gramene:pankaj_jaiswal PO:0009084 TO:moorel A lemma morphology trait (TO:1000023) which is the color of the sterile lemma (PO:0009040). plant_trait_ontology SLmC (related) STLEMCL (related) TO:0000400 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. sterile lemma color true true A lemma morphology trait (TO:1000023) which is the color of the sterile lemma (PO:0009040). IRRI:SES PATO:0000014 PO:0009040 TO:cooperl TO:moorel A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the plant growth hormone. plant_trait_ontology growth regulator sensitivity (related) plant hormone response (related) TO:0000401 plant growth hormone sensitivity A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the plant growth hormone. TO:cooperl A grain width (TO:0000975) which is the width of the dehulled grain with pericarp (PO:0009084). PATO:0000921 TO_GIT:123 width of grain without hull (exact) dehulled grain curved width (narrow) plant_trait_ontology DHULGRWD (exact) GRWD (broad) dehulled grain width (exact) TO:0000402 Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. dehulled grain width A grain width (TO:0000975) which is the width of the dehulled grain with pericarp (PO:0009084). Gramene:pankaj_jaiswal PO:0009084 TO:moorel Causal agent: Cnaphalocrosis medinalis, Marasmia patnalis. Symptoms: larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding. Plant is susceptible and resistant check (if available) after every 10-test entries. Replicate the test three times, if seed is available. Determined by percentage of damaged and folded leaves. plant_trait_ontology LF (related) LFFRS (related) TO:0000403 leaf-folder resistance Causal agent: Cnaphalocrosis medinalis, Marasmia patnalis. Symptoms: larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding. Plant is susceptible and resistant check (if available) after every 10-test entries. Replicate the test three times, if seed is available. Determined by percentage of damaged and folded leaves. Gramene:pankaj_jaiswal IRRI:SES Extent of rooting from the nodes on a stem. plant_trait_ontology TO:0000404 nodal rooting Extent of rooting from the nodes on a stem. Gramene:pankaj_jaiswal Causal agent: Nymphula depunctalis. Symptoms: Larvae feed on leaf tissue, leaving only the papery upper epidermis. plant_trait_ontology CW (related) CWRS (related) float worm (related) hama putih (indonesian) (related) paddy caseworm (related) TO:0000405 caseworm resistance Causal agent: Nymphula depunctalis. Symptoms: Larvae feed on leaf tissue, leaving only the papery upper epidermis. Gramene:pankaj_jaiswal IRRI:SES A plant quality trait (TO:0000597) which is the percentage of shattered grains, determined by firmly grasping and pulling the hand over the panicle. plant_trait_ontology PNTH (related) Thr (related) TO:0000406 panicle threshability A plant quality trait (TO:0000597) which is the percentage of shattered grains, determined by firmly grasping and pulling the hand over the panicle. IRRI:SES OBSOLETE. plant_trait_ontology TO:0000407 hoppers true plant_trait_ontology HPVIS (related) TO:0000408 hot paste viscosity plant_trait_ontology PVIS (related) TO:0000409 peak viscosity Total protein content of the polished rice. plant_trait_ontology POLRPROTCN (related) TO:0000410 polished rice protein content Total protein content of the polished rice. Gramene:pankaj_jaiswal A caryopsis fruit morphology trait (TO:0001079) which is the ratio of grain length (TO:0000734) to grain width (TO:0002762), including the caryopsis hull (PO:0006000). GRLGWDRO (exact) plant_trait_ontology SDLGWDRO (related) TO:0000411 grain length to width ratio A caryopsis fruit morphology trait (TO:0001079) which is the ratio of grain length (TO:0000734) to grain width (TO:0002762), including the caryopsis hull (PO:0006000). Gramene:pankaj_jaiswal TO:cooperl Determined by deducting the peak viscosity from the cool paste viscosity. plant_trait_ontology SETBK (related) SETBKVIS (related) setback (related) TO:0000412 setback viscosity Determined by deducting the peak viscosity from the cool paste viscosity. Gramene:pankaj_jaiswal37 Causal agent: Rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). The disease is transmitted by the green leafhopper Nephotettix spp. Symptoms: Yellow-to-yellow orange leaves, stunting and slightly reduced tillering. plant_trait_ontology RTD (related) RTVRS (related) TO:0000413 rice tungro virus resistance Causal agent: Rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). The disease is transmitted by the green leafhopper Nephotettix spp. Symptoms: Yellow-to-yellow orange leaves, stunting and slightly reduced tillering. Gramene:pankaj_jaiswal IRRI:SES http://www.fao.org/inpho/vlibrary/t0567e/T0567E03.htm plant_trait_ontology WHTRPROTCN (related) polished rice protein (related) protein content for polished rice (related) TO:0000414 white rice protein content Abortion at bi-nucleate stage of microspore development. plant_trait_ontology BNUABR (related) TO:0000415 An example is CMS-HL in rice. aborted bi-nucleate stage Abortion at bi-nucleate stage of microspore development. Gramene:pankaj_jaiswal IRRI:SES Abortion of the embryo sac leading to female sterility. plant_trait_ontology EBSABR (related) TO:0000416 embryo sac abortion Abortion of the embryo sac leading to female sterility. Gramene:pankaj_jaiswal A lemma and palea morphology trait (TO:0000079) which is the extent of pubescence (hairs) on the lemma (PO:0009037) and palea (PO:0009038). PATO:0001320 plant_trait_ontology LmPb (related) TO:0000417 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. lemma and palea pubescence A lemma and palea morphology trait (TO:0000079) which is the extent of pubescence (hairs) on the lemma (PO:0009037) and palea (PO:0009038). IRRI:SES PO:0009037 PO:0009038 TO:moorel Causal agent: Gibberella fujikuroi. Symptoms: the plant elongates abnormally, has few tillers and usually dies before producing grains. plant_trait_ontology BKRS (related) Bak (related) TO:0000418 bakanae disease resistance Causal agent: Gibberella fujikuroi. Symptoms: the plant elongates abnormally, has few tillers and usually dies before producing grains. Gramene:pankaj_jaiswal IRRI:SES A leaf morphology trait (TO:0000748) which is a quality of a vascular leaf (PO:0009025). jaiswalp TO_GIT:60 plant_trait_ontology TO:0000419 vascular leaf morphology trait A leaf morphology trait (TO:0000748) which is a quality of a vascular leaf (PO:0009025). Gramene:pankaj_jaiswal PO:0009025 TO:cooperl plant_trait_ontology TO:0000420 fertility related trait plant_trait_ontology POFRT (related) TO:0000421 pollen fertility Causal agent: Sphaerulina oryzina (Cercospora janseana). plant_trait_ontology NBLFSPRS (related) NBLS (related) TO:0000422 narrow brown leaf spot disease resistance Causal agent: Sphaerulina oryzina (Cercospora janseana). Gramene:pankaj_jaiswal IRRI:SES Causal agent: Orseolia oryzae. For the field test to be valid more than 60% of the plants should be affected with not less than 15% silver shoot in the susceptible check. Similarly, 60% of the plants in susceptible check should show silver shoots under green house tests. If any of the test entry in the field evaluation exhibits damage less than 10%, on plant basis, rate it on scale-0, since such a damage could be due to other reasons. Monitor at growth stage 2-5. plant_trait_ontology GM (related) GMRS (related) TO:0000423 gall midge resistance Causal agent: Orseolia oryzae. For the field test to be valid more than 60% of the plants should be affected with not less than 15% silver shoot in the susceptible check. Similarly, 60% of the plants in susceptible check should show silver shoots under green house tests. If any of the test entry in the field evaluation exhibits damage less than 10%, on plant basis, rate it on scale-0, since such a damage could be due to other reasons. Monitor at growth stage 2-5. IRRI:SES Causal agent: Nilparvata lugens (also Nilaparvata lugens). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy. plant_trait_ontology BPH (related) BPHRS (related) TO:0000424 brown planthopper resistance Causal agent: Nilparvata lugens (also Nilaparvata lugens). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy. Gramene:pankaj_jaiswal IRRI:SES plant_trait_ontology ANTCAB (related) anther culture response (related) TO:0000425 anther culturability A stem internode morphology trait (TO:0000756) which is the color of the stem internode (PO:0020142). TO_GIT:317 TO_GIT:64 plant_trait_ontology CmlC (related) INCL (related) culm internode color (related) TO:0000426 stem internode color A stem internode morphology trait (TO:0000756) which is the color of the stem internode (PO:0020142). IRRI:SES TO:cooperl The angle of the culm with respect to the ground surface in a grass plant. plant_trait_ontology CULMAG (related) CmA (related) TO:0000427 culm angle The angle of the culm with respect to the ground surface in a grass plant. IRRI:SES plant_trait_ontology CAIND (related) TO:0000428 callus induction Plant sensitivity observed in response to different concentrations of salt in the growth medium. plant_trait_ontology SALTSN (related) Sal (related) saline sensitivity (related) TO:0000429 salt sensitivity Plant sensitivity observed in response to different concentrations of salt in the growth medium. IRRI:SES Rate of germination of the seed. plant_trait_ontology GERMRATE (related) GERMSP (related) germination speed (related) TO:0000430 germination rate Rate of germination of the seed. Gramene:pankaj_jaiswal An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip. MaizeGDB_QTL:78112 PATO:0000122 TO_GIT:132 ear infructescence length (exact) plant_trait_ontology EARLG (related) earln (related) TO:0000431 Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters. ear length An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip. TO:cooperl earln (related) MaizeGDB_QTL:78112 Response by the plant in terms of sensitivity to temperature stress. plant_trait_ontology TO:0000432 temperature response trait Response by the plant in terms of sensitivity to temperature stress. Gramene:pankaj_jaiswal An ear infructescence morphology trait (TO:0000976) that is the diameter of an ear infructescence (PO:0025597). MaizeGDB_QTL:78113 PATO:0001334 TO_GIT:132 ear infructescence diameter (exact) plant_trait_ontology EARDIA (related) eard (related) TO:0000433 Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters. ear diameter An ear infructescence morphology trait (TO:0000976) that is the diameter of an ear infructescence (PO:0025597). Gramene:pankaj_jaiswal37 TO:cooperl eard (related) MaizeGDB_QTL:78113 plant_trait_ontology RTACT (related) TO:0000434 root activity plant_trait_ontology SDLNG (related) TO:0000435 seed longevity Determined by counting the filled and unfilled spikelets of the bagged grass inflorescence. plant_trait_ontology SPKST (related) TO:0000436 spikelet sterility Determined by counting the filled and unfilled spikelets of the bagged grass inflorescence. Gramene:pankaj_jaiswal IRRI:SES In plants, it represents the incompetence of the pollen to fertilize the ovum. Reasons could be non-viable pollen, incompatibility, pollen abortion, toxicity, genetic etc. Usually determined by either the pollen sterility or spikelet fertility (percent seed set). plant_trait_ontology MALEST (related) degree of male sterility of male sterile lines (related) male sterility measure (related) TO:0000437 male sterility In plants, it represents the incompetence of the pollen to fertilize the ovum. Reasons could be non-viable pollen, incompatibility, pollen abortion, toxicity, genetic etc. Usually determined by either the pollen sterility or spikelet fertility (percent seed set). Gramene:pankaj_jaiswal true The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a fungal pathogen infection as compared to the susceptible and/or the reference plants of the same species. plant_trait_ontology TO:0000439 It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular fungal strain causing the disease. fungal disease resistance The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a fungal pathogen infection as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal Number of grains (full grain with hull) present in one plant. plant_trait_ontology GRNBPPT (related) TO:0000440 grain number per plant Number of grains (full grain with hull) present in one plant. Gramene:pankaj_jaiswal37 plant_trait_ontology TO:0000441 humidity related trait Fresh weight of the plant. plant_trait_ontology PLFWT (related) TO:0000442 plant fresh weight Fresh weight of the plant. Gramene:pankaj_jaiswal37 An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population. TO_GIT:244 plant_trait_ontology EARNB (related) ENO (related) ENP (related) ear number per plant (related) ears per 10 plants (related) ears per plant (related) TO:0000443 To be used only for traits from maize. ear infructescence number An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population. Gramene:pankaj_jaiswal TO:cooperl plant_trait_ontology TO:0000444 parasitic weed A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001). TO:0000139 plant_trait_ontology SDNB (related) TO:0000445 fruit seed number A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001). Gramene:pankaj_jaiswal PO:0009001 PO:0009010 A leaf morphology trait (TO:0000748) which is the drying of a leaf (PO:0025034). plant_trait_ontology LFDRY (related) TO:0000446 May be a response to abiotic stress. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf drying A leaf morphology trait (TO:0000748) which is the drying of a leaf (PO:0025034). PO:0025034 TO:cooperl TO:moorel Determined by counting the number of spikelets filled with grain in one inflorescence (panicle). TO:0000438 FGRNB (exact) filled grain number per panicle (exact) number of grains per panicle (exact) plant_trait_ontology FILGRNB (related) GRNBPPN (related) filled fruit number (related) grain number per panicle (sensu Oryza) (related) TO:0000447 Another trait seed number (TO:0000445) is directly associated with it. filled grain number Determined by counting the number of spikelets filled with grain in one inflorescence (panicle). Gramene:pankaj_jaiswal Determined by counting the percent spikelets filled with grain in one grass inflorescence (panicle) or plant. plant_trait_ontology FGRPCENT (related) Filled grain percent per panicle (related) TO:0000448 filled grain percentage Determined by counting the percent spikelets filled with grain in one grass inflorescence (panicle) or plant. Gramene:pankaj_jaiswal Average weight of dehulled grains per plant. plant_trait_ontology GRYLDPPL (related) TO:0000449 grain yield per plant Average weight of dehulled grains per plant. Gramene:pankaj_jaiswal Average weight of dehulled grains per panicle. GRYLDPPN (exact) plant_trait_ontology TO:0000450 grain yield per panicle Average weight of dehulled grains per panicle. Gramene:pankaj_jaiswal A ratio of number of large vascular bundles present in the spikelets to the number of spikelets in a grass inflorescence. plant_trait_ontology LVBNBSPKNBRO (related) TO:0000451 large vascular bundle number to spikelet number ratio A ratio of number of large vascular bundles present in the spikelets to the number of spikelets in a grass inflorescence. Gramene:pankaj_jaiswal A ratio of leaf area to the number of spikelets in a grass inflorescence. plant_trait_ontology LFARSPKNBRO (related) TO:0000452 Often measured using the flag leaf. leaf area to spikelet number ratio A ratio of leaf area to the number of spikelets in a grass inflorescence. Gramene:pankaj_jaiswal A ratio of number of tiller bearing the panicles to the total number of tillers in rice. plant_trait_ontology PNTIRO (related) panicle tiller ratio (related) productive tiller percent (related) TO:0000453 Not all the tillers bear panicle. panicle to tiller ratio A ratio of number of tiller bearing the panicles to the total number of tillers in rice. Gramene:pankaj_jaiswal Causal agents: Chilo suppressalis (striped), C. polychrysus (dark headed), Rupela albinella (South American white), Scirpophaga incertulas (yellow), S innotata (white), Sesamia inferens (pink), Maliarpha separatella (african whiteheads), Diopsis macrophthalma (stalked-eyed fly), and several other species. plant_trait_ontology CULMBRRS (related) SB (related) TO:0000454 stem borer resistance Causal agents: Chilo suppressalis (striped), C. polychrysus (dark headed), Rupela albinella (South American white), Scirpophaga incertulas (yellow), S innotata (white), Sesamia inferens (pink), Maliarpha separatella (african whiteheads), Diopsis macrophthalma (stalked-eyed fly), and several other species. Gramene:pankaj_jaiswal IRRI:SES An infructescence morphology trait (TO:0000920) which is the percent of seeds (PO:0009010) set in an infructescence (PO:0006342). plant_trait_ontology SDSPCENT (related) percent seed set (related) TO:0000455 seed set percent A spikelet morphology trait (TO:0000657) which is the average number of spikelets (PO:0009051) in one or more inflorescence (PO:0009049) (e.g. rice panicle) found in a plant or on all plants of a study. plant_trait_ontology SPKNB (related) number of spikelets per panicle (related) spikelet number per panicle (related) TO:0000456 spikelet number A spikelet morphology trait (TO:0000657) which is the average number of spikelets (PO:0009051) in one or more inflorescence (PO:0009049) (e.g. rice panicle) found in a plant or on all plants of a study. Gramene:pankaj_jaiswal PO:0009049 PO:0009051 TO:moorel plant_trait_ontology TBIOMYLD (related) dry matter yield (related) total dry weight (related) TO:0000457 total biomass yield Scores are taken after 10 days following soaking rain or watering- Indicate the degree of stress before recovery. plant_trait_ontology DRR (related) TO:0000458 drought recovery Scores are taken after 10 days following soaking rain or watering- Indicate the degree of stress before recovery. IRRI:SES Length of the root epidermal cell (PO:0025164). plant_trait_ontology RTEPCELLG (related) TO:0000459 root epidermal cell length Length of the root epidermal cell (PO:0025164). Gramene:pankaj_jaiswal37 TO:cooperl plant_trait_ontology light intensity response (related) TO:0000460 light intensity sensitivity plant_trait_ontology BAVEGPH (related) TO:0000461 basic vegetative phase Is an indication of gelatinization temperature. Observed by placing six milled-grains/kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30C temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high. plant_trait_ontology GELTZTMP (related) TO:0000462 gelatinization temperature Is an indication of gelatinization temperature. Observed by placing six milled-grains/kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30C temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high. Gramene:pankaj_jaiswal IRRI:SES A difference of the average number of days between the maize tassel flowering and the first visible silk (stigma) on the maize ear. MaizeGDB_QTL:62044 plant_trait_ontology ANTSKIT (related) ASI (related) FLWSLKINTER (related) TO:0000463 anthesis silking interval A difference of the average number of days between the maize tassel flowering and the first visible silk (stigma) on the maize ear. Gramene:pankaj_jaiswal plant_trait_ontology ALBPTLDFQ (related) TO:0000464 albino plantlet differentiation frequency A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131). jaiswalp plant_trait_ontology TO:0000465 May be measured in a dry mass or in a fresh tissue. mineral and ion content trait A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131). Gramene:pankaj_jaiswal Amount of carbon present in the dry mass. plant_trait_ontology CBCN (related) TO:0000466 carbon content Amount of carbon present in the dry mass. Gramene:pankaj_jaiswal Stability of the cell membrane under the impact of temperature (heat) and water deficit stress. plant_trait_ontology CELMBSTB (related) TO:0000467 The trait is often observed in plants as a measure of drought and heat tolerance by determining the amount of solutes/electrolyte leaked from the cell. cell membrane stability Stability of the cell membrane under the impact of temperature (heat) and water deficit stress. Gramene:pankaj_jaiswal http://www.plantstress.com/methods/CMS_method.htm Causal agent: Magnaporthe grisea. Symptoms: Can affect either or both the leaf and panicles. plant_trait_ontology Bl (related) LFBLRS (related) TO:0000468 leaf blast disease resistance Causal agent: Magnaporthe grisea. Symptoms: Can affect either or both the leaf and panicles. Gramene:pankaj_jaiswal IRRI:SES A plant phenological trait (TO:0000933) which is the number of days from planting to the fruit ripening stage (PO:0025502) or seed maturation stage (PO:0007632). time to harvest (narrow) plant_trait_ontology DTMT (related) Mat (related) TO:0000469 days to maturity A plant phenological trait (TO:0000933) which is the number of days from planting to the fruit ripening stage (PO:0025502) or seed maturation stage (PO:0007632). IRRI:SES TO:cooperl A portion of plant tissue morphology trait (TO:0000843) which is a quality of a vascular tissue and its parts. plant_trait_ontology TO:0000470 vascular tissue morphology trait A portion of plant tissue morphology trait (TO:0000843) which is a quality of a vascular tissue and its parts. Gramene:pankaj_jaiswal TO:moorel Its the fraction of number of penetrated roots over the total number of roots. plant_trait_ontology RTPNID (related) TO:0000471 root penetration index Its the fraction of number of penetrated roots over the total number of roots. Gramene:jcl Gramene:pankaj_jaiswal A plant structure morphology trait (TO:0000839) which is the number of vascular bundles (PO:0005020) in a plant structure (PO:0009011). plant_trait_ontology VBNB (related) TO:0000472 vascular bundle number A plant structure morphology trait (TO:0000839) which is the number of vascular bundles (PO:0005020) in a plant structure (PO:0009011). Gramene:pankaj_jaiswal Measurement of extent of grain shattering, which depends on development of abscission zone. This trait often refers to shattering or the premature or ease of shedding of the grass fruit called caryopsis from the inflorescence. plant_trait_ontology GRSH (related) caryopsis shattering (related) TO:0000473 grain shattering Measurement of extent of grain shattering, which depends on development of abscission zone. This trait often refers to shattering or the premature or ease of shedding of the grass fruit called caryopsis from the inflorescence. Gramene:pankaj_jaiswal Angle of opening of glumes is measured on each floret, assessment based on mean angle of glume opening. plant_trait_ontology glume angle (related) opening of glume of male sterile lines (related) TO:0000474 glume opening Angle of opening of glumes is measured on each floret, assessment based on mean angle of glume opening. Gramene:pankaj_jaiswal IRRI:SES A root thickness (TO:0000306) trait which is the thickness of a shoot-borne root (PO:0000042). plant_trait_ontology ADVRTTH (related) TO:0000475 Adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are still part of the root system (PO:0025025). adventitious root thickness A root thickness (TO:0000306) trait which is the thickness of a shoot-borne root (PO:0000042). TO:cooperl A metabolite content trait (TO:0000281) which is the amount of plant hormone (CHEBI:37848) in a plant structure (PO:0009011). CHEBI:37848 plant_trait_ontology TO:0000476 growth hormone content A metabolite content trait (TO:0000281) which is the amount of plant hormone (CHEBI:37848) in a plant structure (PO:0009011). Gramene:pankaj_jaiswal Causal agent: Magnaporthe grisea (Pyricularia oryzae). Symptoms are dark necrotic lesions covering partially or completely around the panicle base (node) or the uppermost internode or the lower part. plant_trait_ontology PB (related) PNBLRS (related) TO:0000477 panicle blast disease resistance Causal agent: Magnaporthe grisea (Pyricularia oryzae). Symptoms are dark necrotic lesions covering partially or completely around the panicle base (node) or the uppermost internode or the lower part. Gramene:pankaj_jaiswal IRRI:SES Measures the growth hormone concentration in a plant or plant part. plant_trait_ontology ABA concentration (related) ABACONC (related) abscisic acid accumulation (related) abscisic acid content (related) TO:0000478 abscisic acid concentration Measures the growth hormone concentration in a plant or plant part. Gramene:pankaj_jaiswal Plant sensitivity to an acidic (pH<7) growth media. plant_trait_ontology ADSN (related) TO:0000479 acid sensitivity Plant sensitivity to an acidic (pH<7) growth media. Gramene:pankaj_jaiswal TO:moorel A growth media composition sensitivity (TO:0000238) which is the plant's response to an excess or deficient amount of the macro or micronutrient in the growth medium (soil/culture media). plant_trait_ontology nutrient deficiency (related) TO:0000480 nutrient sensitivity A growth media composition sensitivity (TO:0000238) which is the plant's response to an excess or deficient amount of the macro or micronutrient in the growth medium (soil/culture media). Gramene:pankaj_jaiswal TO:moorel Plant sensitivity to an alkali (pH>7) growth media. plant_trait_ontology ALKSN (related) TO:0000481 alkali sensitivity Plant sensitivity to an alkali (pH>7) growth media. Gramene:pankaj_jaiswal TO:moorel Response by the plant in terms of resistivity or senility to chemical stress. plant_trait_ontology TO:0000482 chemical stress sensitivity Response by the plant in terms of resistivity or senility to chemical stress. Gramene:pankaj_jaiswal Measure of the seed's germination ability at sub-permissive temperature levels. plant_trait_ontology GERMABITMP (related) germination ability at low temperature (related) TO:0000483 germinability at low temperature Measure of the seed's germination ability at sub-permissive temperature levels. Gramene:pankaj_jaiswal A seed morphology trait (TO:0000184) which is the shape of a seed (PO:0009010). PATO:0000052 TO_GIT:193 plant_trait_ontology SDSHP (related) TO:0000484 Seed shape can be a component of seed quality (TO:0000162). Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). seed shape A seed morphology trait (TO:0000184) which is the shape of a seed (PO:0009010). Gramene:pankaj_jaiswal PO:0009010 TO:moorel plant_trait_ontology TO:0000485 sterility related trait A seed morphology trait (TO:0000184) which is the color of a seed (PO:0009010). PATO:000014 TO_GIT:192 plant_trait_ontology SDCL (related) TO:0000486 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. In a seed this can be measured on the seed coat or the inside parts of a seed. seed color A seed morphology trait (TO:0000184) which is the color of a seed (PO:0009010). Gramene:pankaj_jaiswal PO:0009019 TO:moorel An endosperm morphology trait (TO:0000575) which is the color of an endosperm (PO:0009089). PATO:0000014 TO_GIT:133 plant_trait_ontology ENDCL (related) TO:0000487 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. endosperm color An endosperm morphology trait (TO:0000575) which is the color of an endosperm (PO:0009089). Gramene:pankaj_jaiswal PO:0009089 TO:moorel plant_trait_ontology TO:0000488 seed composition quality trait plant_trait_ontology TO:0000489 carbohydrate composition related trait A seed composition based quality trait (TO:0000488) which is the amount of protein (CHEBI_36080) in a seed (PO:0009010). plant_trait_ontology TO:0000490 seed protein composition trait plant_trait_ontology TO:0000491 fat and essential oil composition related trait A leaf morphology trait (TO:0000748) which is the variation in shapes and forms of a leaf (PO:0025034). PATO:0000052 plant_trait_ontology LFSHP (related) TO:0000492 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf shape A leaf morphology trait (TO:0000748) which is the variation in shapes and forms of a leaf (PO:0025034). Gramene:pankaj_jaiswal PO:0025034 TO:cooperl A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034). plant_trait_ontology TO:0000493 If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf composition trait A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034). PO:0025034 TO:moorel plant_trait_ontology TO:0000494 pigment content trait A pigment content trait (TO:0000494) which is a measure of the chlorophyll a and/or chlorophyll b content in a plant structure (PO:0009011). plant_trait_ontology CHLCN (related) TO:0000495 Chlorophyll is the principal photoreceptor in photosynthesis, the light-driven process in which carbon dioxide is fixed to yield carbohydrates and oxygen. Chlorophyll is a cyclic tetrapyrolle, similar in structure to the heme group of globins (hemoglobin, myoglobin) and cytochromes. Chlorophyll differs from heme in a few major respects, most notably that the central metal ion in chlorophyll is magnesium while that in heme is iron. chlorophyll content A pigment content trait (TO:0000494) which is a measure of the chlorophyll a and/or chlorophyll b content in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl The carotenoid content in a plant or plant part. Includes naturally occurring tetra terpenes that are synthesized only in plants. plant_trait_ontology CRTCN (related) TO:0000496 carotenoid content plant_trait_ontology RF (related) TO:0000497 fertility restoration trait Describes the extent of female fertility restoration in terms of percent seed set. plant_trait_ontology FEMRF (related) TO:0000498 female fertility restoration trait Describes the extent of female fertility restoration in terms of percent seed set. Gramene:pankaj_jaiswal A reproductive shoot system morphology trait (TO:0000786) which is a quality of a flower (PO:0009046). TO_GIT:57 plant_trait_ontology TO:0000499 flower morphology trait A reproductive shoot system morphology trait (TO:0000786) which is a quality of a flower (PO:0009046). Gramene:pankaj_jaiswal PO:0009046 TO:cooperl true A spikelet morphology trait (TO:0000657) which is the weight of a spikelet (PO:0009051). PATO:0000128 plant_trait_ontology SPKWT (related) TO:0000501 Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body. spikelet weight A spikelet morphology trait (TO:0000657) which is the weight of a spikelet (PO:0009051). Gramene:pankaj_jaiswal PO:0009051 TO:moorel Resistance to the KClO3 salt content in the growth medium. plant_trait_ontology KCLO3RS (related) KClO3 resistance (related) TO:0000502 potassium chlorate resistance Resistance to the KClO3 salt content in the growth medium. Gramene:pankaj_jaiswal A leaf rolling trait (TO:0000085) which is the measure of time taken by the leaf to roll completely under drought or water stress. plant_trait_ontology LFRLTM (related) TO:0000503 leaf rolling time A leaf rolling trait (TO:0000085) which is the measure of time taken by the leaf to roll completely under drought or water stress. Gramene:pankaj_jaiswal TO:moorel A leaf morphology trait (TO:0000748) which is the leaf surface temperature. plant_trait_ontology LFTMP (related) TO:0000504 If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf temperature A leaf morphology trait (TO:0000748) which is the leaf surface temperature. Gramene:pankaj_jaiswal TO:cooperl TO:moorel A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034). plant_trait_ontology LFWT (related) TO:0000505 If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf weight A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034). Gramene:pankaj_jaiswal TO:cooperl TO:moorel It is a measure of reduced net ammonium production in response to the receipt of photosynthate. plant_trait_ontology NIRCYC (related) nitrogen conservation (related) TO:0000506 nitrogen recycling It is a measure of reduced net ammonium production in response to the receipt of photosynthate. Gramene:pankaj_jaiswal The ability of the plant to adust the osmotic potential under stress conditions. plant_trait_ontology OSADJCAP (related) TO:0000507 The main role of osmotic adjustment in the plant is to assist in the maintenance of turgor and volume as organs lose water during desiccation, i.e. to provide dehydration tolerance. Often determined by relative water or the amount of solute accumulated at a given water potential. osmotic adjustment capacity The ability of the plant to adust the osmotic potential under stress conditions. Gramene:pankaj_jaiswal Average maximum length of the root of a plant in a study that have penetrated to a predetermined soil depth. plant_trait_ontology PENRTLG (related) TO:0000508 penetrated root length Average maximum length of the root of a plant in a study that have penetrated to a predetermined soil depth. Gramene:pankaj_jaiswal true A ratio of penetrated to total number of roots in a plant. plant_trait_ontology PENTRTRO (related) TO:0000510 penetrated to total root ratio A ratio of penetrated to total number of roots in a plant. Gramene:pankaj_jaiswal The total phosphorus ion uptake measured in a plant or a plant part. plant_trait_ontology PHOUP (related) TO:0000511 phosphorus uptake The total phosphorus ion uptake measured in a plant or a plant part. Gramene:pankaj_jaiswal Percent of plants survived under submerged conditions. plant_trait_ontology PTSPCENTSUB (related) TO:0000512 plant survival percentage under submergence Percent of plants survived under submerged conditions. Gramene:pankaj_jaiswal The total potassium ion concentration measured in a plant or a plant part or plant extract. plant_trait_ontology KCONC (related) TO:0000513 potassium concentration The total potassium ion concentration measured in a plant or a plant part or plant extract. Gramene:pankaj_jaiswal The total potassium ion uptake measured in a plant or a plant part. plant_trait_ontology KUP (related) TO:0000514 potassium uptake The total potassium ion uptake measured in a plant or a plant part. Gramene:pankaj_jaiswal A vigor trait (TO:0000250) that is the increase in aboveground biomass in a defined period of time. TO_GIT:418 plant_trait_ontology RELGRATE (related) TO:0000515 Relative growth rate may be calculated in various ways, usually as a rate of growth compared to the amount of starting biomass. In some cases, it may be expressed as a percentage. relative growth rate A vigor trait (TO:0000250) that is the increase in aboveground biomass in a defined period of time. Gramene:pankaj_jaiswal ISBN:9780044453734 TO:Laurel_Cooper The relative length of the root determined after a given treatment as compared to the one determined under normal conditions. plant_trait_ontology RELRTLG (related) TO:0000516 relative root length The relative length of the root determined after a given treatment as compared to the one determined under normal conditions. Gramene:pankaj_jaiswal Elongation of the shoot under submergence condition against a reference without submergence. plant_trait_ontology RELSHELSUB (related) TO:0000517 relative shoot elongation under submergence Elongation of the shoot under submergence condition against a reference without submergence. Gramene:pankaj_jaiswal true It is calculated from the deepest soil layer where roots were present and the longest root measured in the layer. maximum rooting depth (narrow) plant_trait_ontology RTDP (related) TO:0000519 rooting depth It is calculated from the deepest soil layer where roots were present and the longest root measured in the layer. Gramene:pankaj_jaiswal PMID:12582650 The rate of closure of stomata due to stress or coupled to the rate of photosynthesis and/or transpiration. plant_trait_ontology STOCSRRATE (related) TO:0000520 stomatal complex closure rate The rate of closure of stomata due to stress or coupled to the rate of photosynthesis and/or transpiration. Gramene:pankaj_jaiswal The amount of time taken for a stomatal complex (PO:0002000) to close. plant_trait_ontology STOCSRTM (related) TO:0000521 Stomatal complex closure may be due to stress, or coupled to the rate of photosynthesis and/or transpiration. stomatal complex closure time The amount of time taken for a stomatal complex (PO:0002000) to close. Gramene:pankaj_jaiswal TO:cooperl It is a numerical measure of the maximum rate of passage of either water vapour or carbon dioxide through the stomata. plant_trait_ontology STOCOND (related) TO:0000522 stomatal conductance It is a numerical measure of the maximum rate of passage of either water vapour or carbon dioxide through the stomata. Gramene:pankaj_jaiswal Wikipedia:Stomatal_conductance Stomatal resistance (or its inverse, stomatal conductance) can therefore be calculated from the transpiration rate and humidity gradient. (The humidity gradient is the humidity inside the leaf, determined from leaf temperature based on the assumption that the leaf's air spaces are saturated with vapor, minus the humidity of the ambient air, which is measured directly). plant_trait_ontology STORS (related) TO:0000523 This allows scientists to learn how stomata respond to changes in environmental conditions, such as light intensity, humidity, or carbon dioxide concentration. stomatal resistance Stomatal resistance (or its inverse, stomatal conductance) can therefore be calculated from the transpiration rate and humidity gradient. (The humidity gradient is the humidity inside the leaf, determined from leaf temperature based on the assumption that the leaf's air spaces are saturated with vapor, minus the humidity of the ambient air, which is measured directly). Wikipedia:Stomatal_conductance plant_trait_ontology SUBTL (related) TO:0000524 submergence tolerance The ratio of total sodium to potassium ion content measured in a plant or a plant part. plant_trait_ontology NAKRO (related) Na/K ratio (related) sodium to potassium ratio (related) TO:0000525 sodium to potassium content ratio The ratio of total sodium to potassium ion content measured in a plant or a plant part. Gramene:pankaj_jaiswal The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract. plant_trait_ontology NACONC (related) TO:0000526 sodium concentration The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract. Gramene:pankaj_jaiswal The total sodium ion uptake measured in a plant or a plant part. plant_trait_ontology NAUP (related) TO:0000527 sodium uptake The total sodium ion uptake measured in a plant or a plant part. Gramene:pankaj_jaiswal plant_trait_ontology TSHELSUB (related) TO:0000528 total shoot elongation under submergence Number of stomata present on the abaxial surface of leaf. plant_trait_ontology ABXSTOFQ (related) TO:0000529 abaxial stomatal frequency Number of stomata present on the abaxial surface of leaf. Gramene:pankaj_jaiswal Number of stomata present on the adaxial surface of leaf. plant_trait_ontology ADXSTOFQ (related) TO:0000530 adaxial stomatal frequency Number of stomata present on the adaxial surface of leaf. Gramene:pankaj_jaiswal An anther morphology trait (TO:1000022) which is the length (PATO:0000122) of an anther (PO:0009066). TO_GIT:385 plant_trait_ontology ANTLG (related) TO:0000531 Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. anther length true true An anther morphology trait (TO:1000022) which is the length (PATO:0000122) of an anther (PO:0009066). TO:austin_meier TO:ethan_johnson A cardinal organ part morphology trait (TO:0000754) which is the length of the hair of a lemma apiculus (PO:0025616). plant_trait_ontology APIHLG (related) APIHRLG (related) TO:0000532 lemma apiculus hair length A cardinal organ part morphology trait (TO:0000754) which is the length of the hair of a lemma apiculus (PO:0025616). Gramene:pankaj_jaiswal true Variation in the color of the culm of a grass plant. plant_trait_ontology CULMCL (related) TO:0000534 culm color Variation in the color of the culm of a grass plant. Gramene:pankaj_jaiswal true A spikelet floret morphology trait (TO:0000274) which is the color of a spikelet floret (PO:0009082). TO_GIT:105 plant_trait_ontology FLCL (related) TO:0000536 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. spikelet floret color A spikelet floret morphology trait (TO:0000274) which is the color of a spikelet floret (PO:0009082). Gramene:pankaj_jaiswal PATO:0000014 PO:0009082 TO:cooperl A flower morphology trait (TO:0000499) which is the color of the flower (PO:0009046). PATO:0000014 plant_trait_ontology FLCL (related) TO:0000537 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. flower color A flower morphology trait (TO:0000499) which is the color of the flower (PO:0009046). Gramene:pankaj_jaiswal PO:0009046 TO:moorel A ratio of the large sized vascular bundles to the leaf surface area. plant_trait_ontology LVBNBLFARRO (related) TO:0000538 large vascular bundle number to leaf area ratio A ratio of the large sized vascular bundles to the leaf surface area. Gramene:pankaj_jaiswal Number of the large sized vascular bundles. plant_trait_ontology LVBNB (related) TO:0000539 large vascular bundle number Number of the large sized vascular bundles. Gramene:pankaj_jaiswal A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034). PATO:0001323 plant_trait_ontology LFAR (related) TO:0000540 Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf area trait A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034). Gramene:pankaj_jaiswal PO:0025034 TO:cooperl A leaf morphology trait (TO:0000748) which is the position of the leaf (PO:0025034) on the plant. PATO:0000140 TO_GIT:226 plant_trait_ontology LFHT (related) leaf height (related) TO:0000541 Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. Usually measured from the ground. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf position A leaf morphology trait (TO:0000748) which is the position of the leaf (PO:0025034) on the plant. Gramene:pankaj_jaiswal TO:cooperl A leaf morphology trait (TO:0000748) which is the ratio of leaf length (TO:0000135) to leaf width (TO:0000370). plant_trait_ontology LFLGWDRO (related) TO:0000542 If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf length to width ratio A leaf morphology trait (TO:0000748) which is the ratio of leaf length (TO:0000135) to leaf width (TO:0000370). Gramene:pankaj_jaiswal TO:cooperl A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034). CHEBI:51143 plant_trait_ontology LFNICN (related) TO:0000543 leaf nitrogen content A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034). CHEBI:51143 A mesocotyl morphology trait (TO:0000758) which is the length of a mesocotyl (PO:0020037). PATO:0000122 TO_GIT:64 plant_trait_ontology MCTLG (related) TO:0000544 mesocotyl length A mesocotyl morphology trait (TO:0000758) which is the length of a mesocotyl (PO:0020037). Gramene:pankaj_jaiswal PO:0020037 TO:cooperl A panicle inflorescence morphology trait (TO:0000847) which is the length of the region between the panicle base to the lowest (the first) primary panicle branch. PATO:0000122 plant_trait_ontology PNBLBR (related) panicle base to first primary branch (related) panicle base to lowest primary panicle branch (related) peduncle length from panicle base to first primary branch (related) TO:0000545 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. panicle base to lowest branch A panicle inflorescence morphology trait (TO:0000847) which is the length of the region between the panicle base to the lowest (the first) primary panicle branch. Gramene:pankaj_jaiswal TO:moorel A peduncle morphology trait (TO:0000776) which is the diameter at the tip of the peduncle (PO:0009053). PATO:0001334 TO_GIT:88 plant_trait_ontology PDTDIA (related) TO:0000546 Refers to the diameter ((PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary) of the tip of a peduncle (PO:0009053). peduncle top diameter A peduncle morphology trait (TO:0000776) which is the diameter at the tip of the peduncle (PO:0009053). Gramene:pankaj_jaiswal PO:0009053 TO:cooperl A primary branch of inflorescence (TO:0000052) trait which is the number of primary branches present in the inflorescence (PO:0009049). number of second order inflorescence axes (exact) plant_trait_ontology NPB (related) PBRNB (related) PRB (related) number of primary rachis branches (related) panicle primary branch number (related) primary branches per panicle (related) TO:0000547 primary branch number A primary branch of inflorescence (TO:0000052) trait which is the number of primary branches present in the inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel A shoot system morphology trait (TO:0000077) which is the number of rhizomes present in a shoot system (PO:0009006). plant_trait_ontology RHZNB (related) rhizome number per plant (related) TO:0000548 rhizome number A shoot system morphology trait (TO:0000077) which is the number of rhizomes present in a shoot system (PO:0009006). Gramene:pankaj_jaiswal TO:cooperl A shoot axis morphology trait (TO:0000739) which is a quality of a rhizome (PO:0004542). plant_trait_ontology TO:0000549 rhizome morphology trait A shoot axis morphology trait (TO:0000739) which is a quality of a rhizome (PO:0004542). Gramene:pankaj_jaiswal TO:cooperl A rhizome morphology trait (TO:0000549) which is the angle of a branch (PO:0025073) on a rhizome (PO:0004542) . plant_trait_ontology RHZBRAG (related) rhizome branching degree (related) TO:0000550 rhizome branch angle A rhizome morphology trait (TO:0000549) which is the angle of a branch (PO:0025073) on a rhizome (PO:0004542) . Gramene:pankaj_jaiswal TO:cooperl A rhizome morphology trait (TO:0000549) which is the number of branches (PO:0025073) on a rhizome (PO:0004542). plant_trait_ontology RHZBRNB (related) rhizome branching number per plant (related) TO:0000551 rhizome branch number A rhizome morphology trait (TO:0000549) which is the number of branches (PO:0025073) on a rhizome (PO:0004542). Gramene:pankaj_jaiswal TO:cooperl The dry weight of the shoot without inflorescence. plant_trait_ontology SHDWT (related) total shoot dry weight (related) TO:0000552 shoot dry weight The dry weight of the shoot without inflorescence. Gramene:pankaj_jaiswal37 A rhizome morphology trait (TO:0000549) which is the length of a rhizome (PO:0004542). plant_trait_ontology RHZLG (related) average rhizome length (related) TO:0000553 rhizome length A rhizome morphology trait (TO:0000549) which is the length of a rhizome (PO:0004542). Gramene:pankaj_jaiswal TO:cooperl A rhizome morphology trait (TO:0000549) which is the length of a rhizome internode (PO:0025204). plant_trait_ontology RHZINLG (related) average rhizome internode length (related) TO:0000554 rhizome internode length A rhizome morphology trait (TO:0000549) which is the length of a rhizome internode (PO:0025204). Gramene:pankaj_jaiswal TO:cooperl A rhizome morphology trait (TO:0000549) which is the number of rhizome internodes (PO:0025204). plant_trait_ontology RHZINNB (related) average rhizome internode number (related) TO:0000555 rhizome internode number A rhizome morphology trait (TO:0000549) which is the number of rhizome internodes (PO:0025204). Gramene:pankaj_jaiswal TO:cooperl A rhizome morphology trait (TO:0000549) which is the dry weight of a rhizome (PO:0004542). plant_trait_ontology RHZDWT (related) rhizome dry weight per plant (related) TO:0000556 rhizome dry weight A rhizome morphology trait (TO:0000549) which is the dry weight of a rhizome (PO:0004542). TO:cooperl A secondary branching of inflorescence (TO:0000142) trait which is the number of secondary branches in an inflorescence (PO:0009049). number of third order inflorescence axes (exact) plant_trait_ontology SBRNB (related) secondary branches per panicle (related) TO:0000557 secondary branch number A secondary branching of inflorescence (TO:0000142) trait which is the number of secondary branches in an inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel Number of small sized vascular bundles present in a plant part. plant_trait_ontology SVBNB (related) TO:0000558 small vascular bundle number Number of small sized vascular bundles present in a plant part. Gramene:pankaj_jaiswal Space occupied by the plant. plant_trait_ontology SP (related) space (related) TO:0000559 plant volume Space occupied by the plant. Gramene:pankaj_jaiswal Space occupied by each culm or the tiller in a plant. plant_trait_ontology SPPCULM (related) tiller volume (related) TO:0000560 space per culm Space occupied by each culm or the tiller in a plant. Gramene:pankaj_jaiswal A ratio of total space or volume occupied by the whole plant to the total number of culms or tiller in the plant. plant_trait_ontology SPCULMRO (related) TO:0000561 space to culm ratio A ratio of total space or volume occupied by the whole plant to the total number of culms or tiller in the plant. Gramene:pankaj_jaiswal A leaf area trait (TO:0000540) that is the ratio of the leaf area (TO:0000540) to the leaf dry weight (TO:0001014) or leaf dry mass (TO:New). MaizeGDB_QTL:247869 TO_GIT:271 plant_trait_ontology SLA (related) SLFAR (related) leaf specific area (related) TO:0000562 specific leaf area A leaf area trait (TO:0000540) that is the ratio of the leaf area (TO:0000540) to the leaf dry weight (TO:0001014) or leaf dry mass (TO:New). TO:cooperl A spikelet morphology trait (TO:0000657) which is the ratio of length to the width of a spikelet (PO:0009051). PATO:0000122 PATO:0000921 plant_trait_ontology SPKLGWDRO (related) TO:0000563 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. spikelet length to width ratio A spikelet morphology trait (TO:0000657) which is the ratio of length to the width of a spikelet (PO:0009051). Gramene:pankaj_jaiswal PO:0009051 TO:moorel A spikelet morphology trait (TO:0000657) which is the width of the spikelets (PO:0009051) present in a grass inflorescence. PATO:0000921 plant_trait_ontology SPKWD (related) TO:0000564 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. spikelet width A spikelet morphology trait (TO:0000657) which is the width of the spikelets (PO:0009051) present in a grass inflorescence. Gramene:pankaj_jaiswal PO:0009051 TO:moorel Number of spikelets present in the rice panicle per unit length. plant_trait_ontology SPKPPNLG (related) number of spikelets per cm panicle length (related) spikelet number per panicle length (related) TO:0000565 spikelets per panicle length Number of spikelets present in the rice panicle per unit length. Gramene:pankaj_jaiswal A vascular leaf morphology trait (TO:0000419) which is the number of leaf stomatal complexes (PO:0025183) present on the leaf surface. plant_trait_ontology STOFQ (related) TO:0000566 leaf stomatal complex frequency A vascular leaf morphology trait (TO:0000419) which is the number of leaf stomatal complexes (PO:0025183) present on the leaf surface. Gramene:pankaj_jaiswal plant_trait_ontology TIAG (related) TO:0000567 tiller angle Weight of the shoot without inflorescence. plant_trait_ontology SHWT (related) total shoot weight (related) TO:0000568 shoot axis weight Weight of the shoot without inflorescence. Gramene:pankaj_jaiswal37 plant_trait_ontology WBPH egg mortality (related) WBPHOVI (related) TO:0000569 white-backed planthopper egg mortality plant_trait_ontology WLPCENT (related) percentage of watery lesion (related) TO:0000570 watery lesion percentage Fresh weight of the shoot without inflorescence. plant_trait_ontology SHFWT (related) total shoot fresh weight (related) TO:0000571 shoot fresh weight Fresh weight of the shoot without inflorescence. Gramene:pankaj_jaiswal37 A petal morphology trait (TO:0000863) which is the color of a petal (PO:0009032). PATO:0000014 plant_trait_ontology TO:0000572 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. petal color A petal morphology trait (TO:0000863) which is the color of a petal (PO:0009032). Gramene:pankaj_jaiswal PO:0009032 TO:moorel A sepal morphology trait (TO:0000864) which is the color of a sepal (PO:0009031) in a flower (PO:0009049). PATO:0000014 plant_trait_ontology TO:0000573 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. sepal color A sepal morphology trait (TO:0000864) which is the color of a sepal (PO:0009031) in a flower (PO:0009049). Gramene:pankaj_jaiswal PO:0009031 PO:0009049 TO:moorel A tepal morphology trait (TO:0000865) which is the color of a tepal (PO:0009033). PATO:0000014 plant_trait_ontology TO:0000574 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. tepal color A tepal morphology trait (TO:0000865) which is the color of a tepal (PO:0009033). Gramene:pankaj_jaiswal PO:0009033 TO:moorel A portion of plant tissue morphology trait (TO:0000843) which is a quality of an endosperm (PO:0009089). TO_GIT:133 plant_trait_ontology TO:0000575 endosperm morphology trait A portion of plant tissue morphology trait (TO:0000843) which is a quality of an endosperm (PO:0009089). PO:0009089 TO:moorel A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047). TO:0000309 PATO:0000122 TO_GIT:157 core length (narrow) plant_trait_ontology CULMLG (related) CmL (related) STEMLG (related) culm height (related) culm length (related) stem height (related) TO:0000576 Often measured from soil surface to highest point on stem. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. stem length A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047). Gramene:pankaj_jaiswal37 PO:0009047 TO:moorel A stem morphology trait (TO:0000361) which is the angle of a stem (PO:0009047). PATO:0002326 plant_trait_ontology STEMAG (related) TO:0000577 Refer to angle (PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle. stem angle A stem morphology trait (TO:0000361) which is the angle of a stem (PO:0009047). Gramene:pankaj_jaiswal PO:0009047 TO:moorel The average fresh weight of the root determined in a study. plant_trait_ontology RTFWT (related) total root fresh weight (related) TO:0000578 root fresh weight The average fresh weight of the root determined in a study. Gramene:pankaj_jaiswal37 The trait is an indirect measure of the balance between water absorption and transpiration. plant_trait_ontology RTDWTTINBRO (related) deep root dry weight to tiller number ratio (related) TO:0000579 root dry weight to tiller number ratio The trait is an indirect measure of the balance between water absorption and transpiration. Gramene:pankaj_jaiswal37 plant_trait_ontology TO:0000580 cytoplasmic male sterility An inflorescence morphology trait (TO:0000373) which is the color of an inflorescence (PO:0009049). PATO:0000014 TO_GIT:92 TO_GIT:97 head color (narrow) plant_trait_ontology TO:0000581 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. inflorescence color An inflorescence morphology trait (TO:0000373) which is the color of an inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:cooperl A reproductive shoot system morphology trait (TO:0000786) which is the number of inflorescences (PO:0009049). PATO:0001555 TO_GIT:97 plant_trait_ontology INFLONB (related) TO:0000582 Refer to number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. inflorescence number A reproductive shoot system morphology trait (TO:0000786) which is the number of inflorescences (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:cooperl TO:moorel An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001). TO_GIT:244 plant_trait_ontology TO:0000583 Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. infructescence weight An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001). Gramene:pankaj_jaiswal TO:cooperl true true A root length (TO:0000227) that is the length of one or more seminal roots (PO:0000046). PATO:0000122 TO_GIT:365 plant_trait_ontology TO:0000586 Seminal root is the primary root originating in a plant after germination. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. seminal root length A root length (TO:0000227) that is the length of one or more seminal roots (PO:0000046). Gramene:pankaj_jaiswal37 TO:austin_meier TO:seymour_megan A seed quality trait (TO:0000931) which is the quality of the endosperm (PO:0009089) texture, content, composition, size, etc. TO:0000150 plant_trait_ontology End (related) endosperm quality (sensu Poaceae) (related) TO:0000587 endosperm quality A seed quality trait (TO:0000931) which is the quality of the endosperm (PO:0009089) texture, content, composition, size, etc. Gramene:pankaj_jaiswal PO:0009089 true A grain weight (TO:0000919) which is the average weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000). TO:0000509 TO_GIT:245 plant_trait_ontology TO:0000589 The average grain weight (TO:0000589) can be used to calculate the overall yield or produce from a field. average grain weight A grain weight (TO:0000919) which is the average weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000). Gramene:pankaj_jaiswal TO:cooperl A grain weight (TO:0000919) which is the weight a dehulled grain (caryopsis fruit; PO:0030104). GRWT (broad) TO_GIT:242 plant_trait_ontology DHULGRWT (related) TO:0000590 Dehulling is the process of removing the caryopsis hull (PO:0006000), which consists of a dried lemma (PO:0009037) and a dried palea (PO:0009037). dehulled grain weight A grain weight (TO:0000919) which is the weight a dehulled grain (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal TO:cooperl A dehulled grain weight (TO:0000590) which is the weight of a sample of 100 dehulled grains (caryopsis fruit; PO:0030104). HDGRWT (broad) hundred grain weight (broad) HDHULGRWT (exact) hundred dehulled grain weight (exact) plant_trait_ontology TO:0000591 100-dehulled grain weight A dehulled grain weight (TO:0000590) which is the weight of a sample of 100 dehulled grains (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal TO:cooperl A dehulled grain weight (TO:0000590) which is the weight of a sample of 1000 dehulled grains (caryopsis fruit; PO:0030104) . thousand grain weight (broad) TDHULGRWT (exact) thousand dehulled grain weight (exact) plant_trait_ontology TDGRWT (related) TO:0000592 1000-dehulled grain weight A dehulled grain weight (TO:0000590) which is the weight of a sample of 1000 dehulled grains (caryopsis fruit; PO:0030104) . Gramene:pankaj_jaiswal TO:cooperl A grain weight (TO:0000919) which is the weight of a polished grain (caryopsis fruit; PO:0030104). PLSGRWT (exact) plant_trait_ontology TO:0000593 Polishing removes the bran, which consists of aleurone layer (PO:0005360), pericarp; (PO:0009084) and the germ (plant embryo; PO:0009009). In rice, this is what is referred to as 'white rice'. polished grain weight A grain weight (TO:0000919) which is the weight of a polished grain (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal TO:cooperl A polished grain weight (TO:0000593) which is the weight of a sample of 100 polished grains. HPLSGRWT (exact) hundred polished grain weight (exact) plant_trait_ontology TO:0000594 100-polished grain weight A polished grain weight (TO:0000593) which is the weight of a sample of 100 polished grains. Gramene:pankaj_jaiswal TO:cooperl A polished grain weight (TO:0000593) which is the weight of a sample of 1000 polished grains. TPLSGRWT (exact) thousand polished grain weight (exact) plant_trait_ontology TO:0000595 1000-polished grain weight A polished grain weight (TO:0000593) which is the weight of a sample of 1000 polished grains. Gramene:pankaj_jaiswal TO:cooperl OBSOLETE. plant_trait_ontology TO:0000596 plant volume (sensu Poaceae) true A plant trait (TO:0000387) that contributes to the overall utility, nutritional, or economic value of a plant, plant structure (PO:0009011) or plant product jaiswalp TO_GIT:260 plant_trait_ontology TO:0000597 Quality traits of a plant, plant structure or plant product vary from crop production to food consumption factors and may include organoleptic properties (flavor, aroma, appearance, texture, etc), storability, processing qualities and nutritional aspects. Market quality standards for crops are based on complex interaction of social, economic and biological factors and are highly crop-specific (Acquaah, 2012). Plant traits from other upper level classes may contribute to (as part_of children) to specific plant quality traits. plant quality trait A plant trait (TO:0000387) that contributes to the overall utility, nutritional, or economic value of a plant, plant structure (PO:0009011) or plant product Gramene:pankaj_jaiswal ISBN:9781118313718 TO:cooperl The total protein content measured in a plant or a plant part. plant_trait_ontology PROTCN (related) total protein content (related) TO:0000598 protein content The total protein content measured in a plant or a plant part. Gramene:pankaj_jaiswal37 A biochemical trait which is a quality of an enzymatic reaction. TO_GIT:380 plant_trait_ontology enzymatic activity (related) enzyme catalytic activity (related) TO:0000599 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. enzyme activity trait A biochemical trait which is a quality of an enzymatic reaction. TO:cooperl Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. GO:0003824 Response shown by the plant in the presence of UV-A light stress. plant_trait_ontology UV-A resistance (related) UVARS (related) Ultraviolet-A light sensitivity (related) Ultraviolet-A resistance (related) TO:0000600 UV-A light sensitivity Response shown by the plant in the presence of UV-A light stress. Gramene:pankaj_jaiswal Response shown by the plant in the presence of UV-B light stress. plant_trait_ontology UV-B resistance (related) UVBRS (related) Ultraviolet-A light sensitivity (related) Ultraviolet-B resistance (related) TO:0000601 UV-B light sensitivity Response shown by the plant in the presence of UV-B light stress. Gramene:pankaj_jaiswal The total fat or lipid content of present in the plant or the plant part such as seed. plant_trait_ontology FATCN (related) lipid content (related) TO:0000602 total fat content The total fat or lipid content of present in the plant or the plant part such as seed. Gramene:pankaj_jaiswal The ratio of total magnesium to potassium ion content measured in a plant or a plant part. plant_trait_ontology MGKCNRO (related) Magnesium to potassium ratio (related) ratio of magnesium to potassium (related) TO:0000603 magnesium to potassium content ratio The ratio of total magnesium to potassium ion content measured in a plant or a plant part. Gramene:pankaj_jaiswal Measures the fat and essential oil content in a plant or plant part. plant_trait_ontology TO:0000604 fat and essential oil content Measures the fat and essential oil content in a plant or plant part. Gramene:pankaj_jaiswal An assay to determine the content of hydrogen peroxide or the peroxide reactive ions. plant_trait_ontology H2O2 content (related) H2O2CN (related) TO:0000605 hydrogen peroxide content An assay to determine the content of hydrogen peroxide or the peroxide reactive ions. Gramene:pankaj_jaiswal An assay to determine the joint action of alpha-amylase, beta-amylase and any other carbohydrate-degrading enzymes. plant_trait_ontology DIASPWR (related) TO:0000606 diastatic power An assay to determine the joint action of alpha-amylase, beta-amylase and any other carbohydrate-degrading enzymes. GR_REF:8025 The total mineral or ion content measured after drying and burning the plant or a plant part. plant_trait_ontology TO:0000607 ash content The total mineral or ion content measured after drying and burning the plant or a plant part. Gramene:pankaj_jaiswal A mineral and ion content trait (TO:0000465) which is the sodium cation (CHEBI:29101) composition in a plant structure (PO:0009011). plant_trait_ontology TO:0000608 sodium content A mineral and ion content trait (TO:0000465) which is the sodium cation (CHEBI:29101) composition in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011). plant_trait_ontology TO:0000609 potassium content A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl The ratio of soluble protein to total protein content is a measure of the degree of proteolysis. plant_trait_ontology STPROTRO (related) Soluble protein to total protein content ratio (related) TO:0000610 As seen in degree of modification of grain to malt in barley. soluble to total protein ratio The ratio of soluble protein to total protein content is a measure of the degree of proteolysis. GR_REF:8025 It is a measure of the sugars and nitrogenous compounds available for yeast nutrition. plant_trait_ontology MALTEXTPCENT (related) malt-extract percent (related) TO:0000611 malt-extract percentage It is a measure of the sugars and nitrogenous compounds available for yeast nutrition. GR_REF:8025 A caryopsis fruit morphology trait (TO:0001079) which is a measure of the density or weight per unit of volume of a grain at a standardized moisture level. TO_GIT:262 plant_trait_ontology SDDN (related) test weight (related) TO:0000612 grain density A caryopsis fruit morphology trait (TO:0001079) which is a measure of the density or weight per unit of volume of a grain at a standardized moisture level. GR_REF:8025 TO:cooperl It is defined as the amount of hull-less kernels obtained after de-hulling, expressed as a percentage of the weight of the sample. plant_trait_ontology GROATPCENT (related) caryopsis percentage (related) groat proportion (related) hull percentage (related) TO:0000613 This trait is most commonly used in determining the milling quality of Oat. groat percentage It is defined as the amount of hull-less kernels obtained after de-hulling, expressed as a percentage of the weight of the sample. GR_REF:8025 A lemma morphology trait (TO:1000023) which is the shape of the lemma (PO:0009037). TO_GIT:390 plant_trait_ontology TO:0000614 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). lemma shape true true true A lemma morphology trait (TO:1000023) which is the shape of the lemma (PO:0009037). Gramene:pankaj_jaiswal PATO:0000052 PO:0009037 TO:cooperl TO:moorel Response with respect to application of abscisic acid. plant_trait_ontology ABA response (related) ABASN (related) abscisic acid response (related) TO:0000615 abscisic acid sensitivity Response with respect to application of abscisic acid. Gramene:pankaj_jaiswal It is a measure of the total length covered by the leaf margin. plant_trait_ontology LFCIRCUM (related) leaf circumference (related) TO:0000616 leaf perimeter It is a measure of the total length covered by the leaf margin. Gramene:pankaj_jaiswal A grain color (TO:0002617) trait which is the percentage of colored grains. percentage of damaged yellow rice grains (narrow) percentage of green rice grains (narrow) percentage of red rice grains (narrow) plant_trait_ontology TO:0000617 The measurement is on de-hulled grains in comparison to a reference color. colored grain percentage A grain color (TO:0002617) trait which is the percentage of colored grains. Gramene:pankaj_jaiswal TO:cooperl The measurement is on de-hulled grains in comparison to a reference color. TO:cooperl The percentage of cracked dehulled grain with at least one fourth of the size still intact. plant_trait_ontology CRUSHDHULGRPCENT (related) CRUSHGRPCENT (related) cracked dehulled-grain percentage (related) cracked grain percentage (related) crushed dehulled-grain percentage (related) percent broken (related) percentage brokens (related) TO:0000618 crushed grain percentage The percentage of cracked dehulled grain with at least one fourth of the size still intact. Gramene:pankaj_jaiswal A phenomenon associated to the seeds that germinate before becoming detached or harvested from the parent plant. Thus the germination occurs before the seed undergoes dormancy. plant_trait_ontology preharvest germination (related) TO:0000619 vivipary A phenomenon associated to the seeds that germinate before becoming detached or harvested from the parent plant. Thus the germination occurs before the seed undergoes dormancy. Gramene:pankaj_jaiswal A whole plant growth and development trait (TO:0000947) that is a quality of a plant embryo development stage (PO:0007631). TO_GIT:299 plant_trait_ontology TO:0000620 plant embryo development trait A whole plant growth and development trait (TO:0000947) that is a quality of a plant embryo development stage (PO:0007631). Gramene:pankaj_jaiswal TO:cooperl Traits associated with observing effects on the development of the inflorescence and its parts. plant_trait_ontology TO:0000621 inflorescence development trait Traits associated with observing effects on the development of the inflorescence and its parts. Gramene:pankaj_jaiswal Traits associated with observing effects on the development of the flower and its parts. plant_trait_ontology floret development trait (related) TO:0000622 flower development trait Traits associated with observing effects on the development of the flower and its parts. Gramene:pankaj_jaiswal An inflorescence bristle length trait (TO:0000643) that is the length of the bristles found on an involucre (PO:0009100). TO_GIT:153 plant_trait_ontology INVLCBS (related) bristle length (related) sterile inflorescence branch length (related) TO:0000623 involucre bristle length An inflorescence bristle length trait (TO:0000643) that is the length of the bristles found on an involucre (PO:0009100). Gramene:pankaj_jaiswal TO:cooperl This is an assay of any direct or indirect, harmful or beneficial effect of one plant on another through the production of chemical compounds (allelochemicals) that escape in the environment. plant_trait_ontology ALLELPATHEF (related) TO:0000624 allelopathic effect This is an assay of any direct or indirect, harmful or beneficial effect of one plant on another through the production of chemical compounds (allelochemicals) that escape in the environment. Gramene:pankaj_jaiswal A spikelet morphology trait (TO:0000657) which is the density of a spikelet (PO:0009051) in the inflorescence (PO:0009049) or on the given inflorescence branch (PO:0009081) order. PATO:0001019 plant_trait_ontology SPKDN (related) TO:0000625 Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. spikelet density A spikelet morphology trait (TO:0000657) which is the density of a spikelet (PO:0009051) in the inflorescence (PO:0009049) or on the given inflorescence branch (PO:0009081) order. Gramene:pankaj_jaiswal PO:0009049 PO:0009051 PO:0009081 TO:moorel plant_trait_ontology RELPHOCONCSHRT (related) TO:0000626 relative phosphorus distribution between shoot and root plant_trait_ontology RELPHOUTZEFY (related) TO:0000627 relative phosphorus utilization efficiency Causal agent: Sclerospora graminicola (Sacc. ) Schroet. It causes the downy mildew disease in Pearl millet. plant_trait_ontology Pg_DNMDRS (related) TO:0000628 pearl millet downy mildew resistance Causal agent: Sclerospora graminicola (Sacc. ) Schroet. It causes the downy mildew disease in Pearl millet. Gramene:pankaj_jaiswal It is determined as the number of days from the seed sowing to the stage when either the pollen shedding or anther exsertion occurs on the maize tassel. days to tassel flowering (exact) plant_trait_ontology TO:0000629 Depends on the study type. For a study with multiple plants, on average 50% of the plants must have sheeding of pollen or anther exsertion. days to tassel It is determined as the number of days from the seed sowing to the stage when either the pollen shedding or anther exsertion occurs on the maize tassel. Gramene:pankaj_jaiswal Length of the pedicel. plant_trait_ontology PDCLG (related) TO:0000630 pedicel length Length of the pedicel. Gramene:pankaj_jaiswal plant_trait_ontology GRNPTLDFQ (related) TO:0000631 green plantlet differentiation frequency plant_trait_ontology GRNPTLYLDFQ (related) TO:0000632 green plantlet yield frequency plant_trait_ontology RELTDWT (related) TO:0000633 relative total dry weight A stem morphology trait (TO:0000361) which is the number of stem nodes (PO:0020141). plant_trait_ontology NDNB (related) TO:0000634 stem node number A stem morphology trait (TO:0000361) which is the number of stem nodes (PO:0020141). Gramene:pankaj_jaiswal plant_trait_ontology POPEXPVOL (related) popcorn volume (related) TO:0000635 popping expansion volume plant_trait_ontology RELSHDWT (related) TO:0000636 relative shoot dry weight true An inflorescence width (TO:0000804) trait which is the width of a spike inflorescence (PO:0030117). plant_trait_ontology SPIKEWD (related) TO:0000638 spike width An inflorescence width (TO:0000804) trait which is the width of a spike inflorescence (PO:0030117). TO:cooperl plant_trait_ontology SDFRT (related) percent seed fertility (related) TO:0000639 seed fertility Total sum of number of roots in a plant derived per experiment. plant_trait_ontology TRTNB (related) TO:0000640 total root number Total sum of number of roots in a plant derived per experiment. Gramene:pankaj_jaiswal An inflorescence primary branch morphology trait (TO:0000846) which the length of a second order inflorescence axis (PO:0006321). PATO:0000122 plant_trait_ontology PBRLG (related) TO:0000641 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. inflorescence primary branch length An inflorescence primary branch morphology trait (TO:0000846) which the length of a second order inflorescence axis (PO:0006321). Gramene:pankaj_jaiswal PO:0006321 TO:moorel A leaf sheath morphology trait (TO:0000835) which is the measurement, in centimeters of the leaf sheath (PO:0020104) diameter. PATO:0001334 plant_trait_ontology LFSDIA (related) TO:0000642 Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. leaf sheath diameter A leaf sheath morphology trait (TO:0000835) which is the measurement, in centimeters of the leaf sheath (PO:0020104) diameter. Gramene:pankaj_jaiswal PO:0020104 TO:moorel An inflorescence morphology trait (TO:0000050) that is the length of the bristles found on an inflorescence (PO:0009049). TO_GIT:153 plant_trait_ontology BRLG (related) TO:0000643 inflorescence bristle length An inflorescence morphology trait (TO:0000050) that is the length of the bristles found on an inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel The relative (dry)weight of the root determined after a given treatment as compared to the one determined under normal conditions. plant_trait_ontology RELRTDWT (related) TO:0000644 relative root dry weight The relative (dry)weight of the root determined after a given treatment as compared to the one determined under normal conditions. Gramene:pankaj_jaiswal jaiswalp plant_trait_ontology RELPHOCONC (related) TO:0000645 relative phosphorus concentration plant_trait_ontology CAUAXIBRNB (related) TO:0000646 cauline axillary branch number plant_trait_ontology RELACIDPASEACT (related) TO:0000647 relative acid phosphatase activity plant_trait_ontology RELPHOUP (related) TO:0000648 relative phosphorus uptake A peduncle morphology trait (TO:0000776) which is the width of a peduncle (PO:0025386). PATO:0000921 TO_GIT:88 plant_trait_ontology PDCWD (related) TO:0000649 Refers to the width ((PATO:0000921):A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite) of a peduncle (PO:0009053). peduncle width A peduncle morphology trait (TO:0000776) which is the width of a peduncle (PO:0025386). Gramene:pankaj_jaiswal PO:0025386 TO:cooperl A lemma morphology trait (TO:1000023) which is the length of the lemma (PO:0009037). TO_GIT:390 plant_trait_ontology LEMLG (related) TO:0000650 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. lemma length true true true A lemma morphology trait (TO:1000023) which is the length of the lemma (PO:0009037). Gramene:pankaj_jaiswal PATO:0000122 PO:0009037 TO:moorel plant_trait_ontology FLRCL (related) TO:0000651 flour color A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue. plant_trait_ontology LFNEC (related) leaf scorch (related) TO:0000652 If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf necrosis A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue. Gramene:pankaj_jaiswal TO:cooperl A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a seed (PO:0009010). TO_GIT:254 plant_trait_ontology TO:0000653 seed growth and development trait A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a seed (PO:0009010). Gramene:pankaj_jaiswal TO:cooperl A plant structure growth and development trait (TO:0000928) that is a quality of the growth of the shoot system (PO:0009006), and shoot system development stages (PO:0025527). TO_GIT:268 plant_trait_ontology TO:0000654 shoot system growth and development trait A plant structure growth and development trait (TO:0000928) that is a quality of the growth of the shoot system (PO:0009006), and shoot system development stages (PO:0025527). Gramene:pankaj_jaiswal TO:cooperl A plant organ development trait (TO:0000927) that has as primary participant a leaf (PO:0025034). jaiswalp TO_GIT:253 plant_trait_ontology TO:0000655 leaf growth and development trait A plant organ development trait (TO:0000927) that has as primary participant a leaf (PO:0025034). Gramene:pankaj_jaiswal TO:cooperl Traits associated with observing effects on the development of the root and its parts. plant_trait_ontology TO:0000656 root development trait Traits associated with observing effects on the development of the root and its parts. Gramene:pankaj_jaiswal An inflorescence morphology trait (TO:0000373) which is a quality of a spikelet (PO:0009051). TO_GIT:144 plant_trait_ontology TO:0000657 spikelet morphology trait An inflorescence morphology trait (TO:0000373) which is a quality of a spikelet (PO:0009051). Gramene:pankaj_jaiswal PO:0009051 TO:cooperl TO:moorel It is determined as the number of days from the seed sowing to the first visible silk (stigma) on the maize ear. plant_trait_ontology TO:0000658 Depends on the study type. For a study with multiple plants, on average 50% of the plants must have exposed silks. days to silk It is determined as the number of days from the seed sowing to the first visible silk (stigma) on the maize ear. Gramene:pankaj_jaiswal The time interval between the appearance of successive leaves (days/leaf) on the developing shoot. plant_trait_ontology TO:0000659 phyllochron The time interval between the appearance of successive leaves (days/leaf) on the developing shoot. Gramene:pankaj_jaiswal plant_trait_ontology TO:0000660 axillary bud dormancy plant_trait_ontology TO:0000661 tiller bud dormancy Caused by Fusarium graminearum Schwabe, that affects the quality and yield of barley (Hordeum vulgare L.) grain. plant_trait_ontology Hv_FUSHEADBTRS (related) TO:0000662 barley fusarium head blight resistance Caused by Fusarium graminearum Schwabe, that affects the quality and yield of barley (Hordeum vulgare L.) grain. Gramene:pankaj_jaiswal Caused by Fusarium graminearum Schwabe (teleomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum aestivum L.). TO_GIT:70 plant_trait_ontology Ta_FUSHEADBTRS (related) TO:0000663 wheat fusarium head blight resistance Caused by Fusarium graminearum Schwabe (teleomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum aestivum L.). Gramene:pankaj_jaiswal plant_trait_ontology TO:0000664 fungal blight disease resistance Measurement of the whitish area found in the dehulled grain. plant_trait_ontology GRCARWHT (related) TO:0000665 grain core area white Measurement of the whitish area found in the dehulled grain. Gramene:pankaj_jaiswal plant_trait_ontology BRWRYLD (related) TO:0000666 brown rice yield OBSOLETE: The quality trait of the seed or the products derived from it. TO:0001069 TO:0001070 TO_GIT:108 plant_trait_ontology TO:0000667 cooking or brewing quality true OBSOLETE: The quality trait of the seed or the products derived from it. Gramene:pankaj_jaiswal Measuring amount of toxins found in the host plant after the infection by a fungal pathogen. The toxin is produced by the pathogen. plant_trait_ontology TO:0000668 mycotoxin content Measuring amount of toxins found in the host plant after the infection by a fungal pathogen. The toxin is produced by the pathogen. Gramene:pankaj_jaiswal Measuring amount of mycotoxin deoxynivalenol found in the host plant after the infection by a fungus Fusarium sp. plant_trait_ontology DONCONC (related) TO:0000669 deoxynivalenol content Measuring amount of mycotoxin deoxynivalenol found in the host plant after the infection by a fungus Fusarium sp. Gramene:pankaj_jaiswal PMID:12897863 The number of flowers present on a inflorescence branch or in the inflorescence itself. plant_trait_ontology FLNB (related) TO:0000670 floret number The number of flowers present on a inflorescence branch or in the inflorescence itself. Gramene:pankaj_jaiswal plant_trait_ontology PREFLFLRABR (related) frequency of pre-flowering floret abortion (related) pre-flowering floret abortion (related) TO:0000671 pre-flowering flower abortion plant_trait_ontology BRAPCENT (related) rice bran percentage (related) TO:0000672 bran percentage Caused by Fusarium graminearum Schwabe (telomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum turgidum). plant_trait_ontology Tt_FUSHEADBTRS (related) tetraploid wheat fusarium head blight disease resistance (related) TO:0000673 tetraploid wheat fusarium head blight resistance Caused by Fusarium graminearum Schwabe (telomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum turgidum). Gramene:pankaj_jaiswal They are non-nutritive plant chemicals that have protective or disease preventive properties. plant_trait_ontology TO:0000674 phytochemical compound content They are non-nutritive plant chemicals that have protective or disease preventive properties. Gramene:pankaj_jaiswal Amount of ferulic acid content determined in a given plant part. Ferulic acid is an antioxidant which neutralizes free radicals (superoxide, nitric oxide and hydroxyl radical) which could cause oxidative damage of cell membranes and DNA. Ferulic acid helps to prevent damage to the cells caused by ultraviolet light. plant_trait_ontology 4-hydroxy-3-methoxycinnamic acid (related) FERULICACIDCN (related) TO:0000675 It is found in the leaves and seeds of many plants, but especially in cereals such as brown rice, whole wheat and oats. ferulic acid content Amount of ferulic acid content determined in a given plant part. Ferulic acid is an antioxidant which neutralizes free radicals (superoxide, nitric oxide and hydroxyl radical) which could cause oxidative damage of cell membranes and DNA. Ferulic acid helps to prevent damage to the cells caused by ultraviolet light. Gramene:pankaj_jaiswal Style color is determined from blooming flowers or florets. plant_trait_ontology STYCL (related) color of silk (related) color of style (related) silk color (related) TO:0000676 style color Style color is determined from blooming flowers or florets. Gramene:pankaj_jaiswal A leaf position (TO:0000541) which is the position of the third leaf (PO:0025034) on a plant. TO_GIT:226 plant_trait_ontology 3LFHT (related) 3rd leaf height (related) third leaf height (related) TO:0000677 Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. third leaf position A leaf position (TO:0000541) which is the position of the third leaf (PO:0025034) on a plant. Gramene:pankaj_jaiswal TO:cooperl An infructescence axis morphology trait (TO:0000921) which is the diameter of a cob. MaizeGDB_QTL:82753 PATO:0001334 TO_GIT:243 plant_trait_ontology COBDIA (related) cobd (related) diameter of central spike of ear (related) TO:0000678 The cob is the first order infructescence axis PO:0025244 of the ear infructescence (new). Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters. cob diameter An infructescence axis morphology trait (TO:0000921) which is the diameter of a cob. TO:cooperl cobd (related) MaizeGDB_QTL:82753 true An inflorescence morphology trait (TO:0000373) trait which is the circumference of an inflorescence (PO:0009049). plant_trait_ontology INFLOCIRCUM (related) TO:0000680 inflorescence circumference An inflorescence morphology trait (TO:0000373) trait which is the circumference of an inflorescence (PO:0009049). TO:cooperl An ear infructescence morphology trait (TO:0000976) that is the circumference of an ear infructescence (PO:0025597). TO_GIT:132 ear infructescence circumference (exact) plant_trait_ontology EARCIRCUM (related) TO:0000681 Refers to circumference (PATO:0001648): An 1-D extent quality which is equal to the length of the closed curve of a circle. Ear circumference (TO:0000681) is equal to ear diameter (TO:0000433) times 3.14. ear circumference An ear infructescence morphology trait (TO:0000976) that is the circumference of an ear infructescence (PO:0025597). TO:cooperl An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point. PATO:0000119 TO_GIT:226 plant_trait_ontology INFLOHT (related) TO:0000682 Refer to height (PATO:0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. inflorescence height An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point. Gramene:pankaj_jaiswal PO:0009049 TO:moorel An ear infructescence morphology trait (TO:0000976) which is the position of an ear infructescence (PO:0025597). MaizeGDB_QTL:61369 TO_GIT:226 plant_trait_ontology EARHT (related) ear height (related) TO:0000683 Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. In maize this is usually measured from the ground to the attachment point of the ear. ear infructescence position An ear infructescence morphology trait (TO:0000976) which is the position of an ear infructescence (PO:0025597). Gramene:pankaj_jaiswal TO:cooperl TO:moorel An assay to test for aroma and flavor reminiscent of freshly cut grass. plant_trait_ontology GRASSYFLVOR (related) grassy flavour (related) TO:0000684 grassy flavor An assay to test for aroma and flavor reminiscent of freshly cut grass. Gramene:pankaj_jaiswal An assay for the soft and juicy texture. plant_trait_ontology FRTENDER (related) TENDER (related) TO:0000685 fruit tenderness An assay for the soft and juicy texture. Gramene:pankaj_jaiswal An assay for a juicy appetizingness. plant_trait_ontology JUICE (related) succulence (related) TO:0000686 juiciness An assay for a juicy appetizingness. Gramene:pankaj_jaiswal An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597). MaizeGDB_QTL:99383 TO_GIT:286 plant_trait_ontology KERROWNB (related) kernel row number per ear (related) TO:0000687 In maize, kernel row number is counted on the central, widest part of the uppermost ear infructescence. In comparing to teosinte "rank", kernel row number is divided by two. kernel row number per ear An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597). TO:cooperl A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597). TO_GIT:288 plant_trait_ontology KERROWLG (related) kernel set length (related) TO:0000688 kernel row length A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597). TO:cooperl plant_trait_ontology GRTENDER (related) kernel tenderness (related) TO:0000689 grain tenderness Measures the maysin content in a plant or plant part. plant_trait_ontology MAYSINCN (related) TO:0000690 Maysin is a coagulable globulin protein produced by the maize plant. It has insecticide properties. maysin content Measures the maysin content in a plant or plant part. Gramene:pankaj_jaiswal Causal agent: Setosphaeria turcica. plant_trait_ontology TO:0000691 Zea mays northern leaf blight disease resistance Causal agent: Setosphaeria turcica. Gramene:pankaj_jaiswal plant_trait_ontology NLFBTINCUBPD (related) TO:0000692 NCLB incubation period plant_trait_ontology AUDPC (related) NLFBTPROGCURV (related) TO:0000693 NCLB area under disease progress curve An assay of firmness and freshness of the fruit. plant_trait_ontology CRISP (related) TO:0000694 fruit crispness An assay of firmness and freshness of the fruit. Gramene:pankaj_jaiswal A leaf margin morphology trait (TO:0002635) which is the color of a leaf margin (PO:0020128). PATO:0000014 plant_trait_ontology LFMCL (related) leaf margin pigmentation (related) pigmentation of leaf margin (related) TO:0000695 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. leaf margin color A leaf margin morphology trait (TO:0002635) which is the color of a leaf margin (PO:0020128). PO:0020128 TO:moorel Amount of starch present in the plant or plant part. plant_trait_ontology STARCHCN (related) TO:0000696 starch content Amount of starch present in the plant or plant part. Gramene:pankaj_jaiswal A yield trait (TO:0000371) which is the yield of starch from a plant structure (PO:0009011). plant_trait_ontology STARCHYLD (related) TO:0000697 Starch yield can be assayed initially with a smaller sample, but later converted to associate with a large sample, for example, for starch yield in kilograms per hectare. starch yield A yield trait (TO:0000371) which is the yield of starch from a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl plant_trait_ontology STARCH (related) mealiness (related) TO:0000698 starchiness Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose. plant_trait_ontology SUSACT (related) TO:0000699 sucrose synthase activity trait Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose. GO:0016157 The quality of having the pleasant taste characteristic of sugar. plant_trait_ontology FRSWEET (related) SWEET (related) TO:0000700 fruit sweetness The quality of having the pleasant taste characteristic of sugar. Gramene:pankaj_jaiswal The pressure within the cell resulting from the absorption of water into the vacuole and the imbibition of water by the protoplasm. plant_trait_ontology TURGPRES (related) TO:0000701 turgor pressure The pressure within the cell resulting from the absorption of water into the vacuole and the imbibition of water by the protoplasm. Gramene:pankaj_jaiswal Concentration of starch present in the plant or plant part. plant_trait_ontology STARCHCONC (related) TO:0000702 starch concentration Concentration of starch present in the plant or plant part. Gramene:pankaj_jaiswal An enzyme activity trait (TO:0000599) which is the quality of the hydrolysis of amylose or an amylose derivative by amylase. plant_trait_ontology TO:0000703 amylase activity trait An enzyme activity trait (TO:0000599) which is the quality of the hydrolysis of amylose or an amylose derivative by amylase. Gramene:pankaj_jaiswal Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. plant_trait_ontology phosphoric monoester hydrolase activity (related) TO:0000704 phosphatase activity trait Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. GO:0016791 Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate. plant_trait_ontology ACIDPASEACT (related) TO:0000705 acid phosphatase activity trait Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate. EC:3.1.3.2 GO:0003993 A collective phyllome structure morphology trait (TO:0000845) that is the color of a caryopsis hull (PO:0006000). plant_trait_ontology HULCL (related) TO:0000706 A caryopsis hull (PO:0006000) is the dry outer covering of a caryopsis fruit (PO:0030104; grain). The caryopsis hull is comprised of a dry lemma and palea, which enclose a spiklet floret (PO:0009082). hull color A collective phyllome structure morphology trait (TO:0000845) that is the color of a caryopsis hull (PO:0006000). Gramene:pankaj_jaiswal TO:cooperl A pericarp morphology trait (TO:0000945) that is the color of the pericarp (PO:0009084). PATO:0000014 TO_GIT:292 plant_trait_ontology DHULGRCL (related) PERICARPCL (related) bran color (related) dehulled grain color (related) grain color (related) TO:0000707 Pericarp is the wall of a fruit, developed from the ovary or carpel wall. Also scored for grain color or color of the dehulled grain in grasses. pericarp color A pericarp morphology trait (TO:0000945) that is the color of the pericarp (PO:0009084). Gramene:pankaj_jaiswal TO:cooperl A whole plant morphology trait (TO:0000398) which is the color of a whole plant (PO:0000003). PATO:0000014 TO_GIT:367 TO_GIT:85 plant_trait_ontology TO:0000708 plant color A whole plant morphology trait (TO:0000398) which is the color of a whole plant (PO:0000003). Gramene:pankaj_jaiswal PO:0000003 TO:cooperl A leaf morphology trait (TO:0000748) which is the appearance of glossiness of the leaf surface. Contributed by change in either the amount or content of cuticle wax (PO:0025386) on a leaf (PO:0025034). plant_trait_ontology TO:0000709 If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf gloss A leaf morphology trait (TO:0000748) which is the appearance of glossiness of the leaf surface. Contributed by change in either the amount or content of cuticle wax (PO:0025386) on a leaf (PO:0025034). Gramene:pankaj_jaiswal Assay to detrmine the amount of globulin proteins. plant_trait_ontology TO:0000710 Globulin proteins also called globular proteins, or spheroproteins are one of the main protein classes. These have a globelike protein structure, that is more or less soluble in aqueous solutions. The two major sub classes are alpha and beta globulins. globulin protein content Assay to detrmine the amount of globulin proteins. Gramene:pankaj_jaiswal An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide imidazolinone. PECO:0007633 plant_trait_ontology TO:0000711 It is expected that the herbicide application must not affect the agronomic yield, if any. imidazolinone sensitivity An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide imidazolinone. Gramene:pankaj_jaiswal An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide sulfonylurea. plant_trait_ontology TO:0000712 It is expected that the herbicide application must not affect the agronomic yield, if any. sulfonylurea herbicide sensitivity An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide sulfonylurea. Gramene:pankaj_jaiswal An endosperm morphology trait (TO:0000575) which is a brittle endosperm (PO:0009089). TO_GIT:133 plant_trait_ontology TO:0000713 brittle endosperm An endosperm morphology trait (TO:0000575) which is a brittle endosperm (PO:0009089). PO:0009089 TO:moorel Absence of seminal roots in the plant. plant_trait_ontology absence of seminal roots (related) TO:0000714 seminal rootless Absence of seminal roots in the plant. Gramene:pankaj_jaiswal In maize ears, the floral meristems undergo repeated dichotomous branching, resulting in fascicled (highly branched and bundled or clustered) ears. plant_trait_ontology TO:0000715 fascicled ear In maize ears, the floral meristems undergo repeated dichotomous branching, resulting in fascicled (highly branched and bundled or clustered) ears. Gramene:pankaj_jaiswal An endosperm morphology trait (TO:0000575) which is an etched endosperm (PO:0009089). TO_GIT:133 plant_trait_ontology TO:0000716 This is also an endosperm quality trait (TO:0000587). etched endosperm An endosperm morphology trait (TO:0000575) which is an etched endosperm (PO:0009089). PO:0009089 TO:moorel An endosperm morphology trait (TO:0000575) which is a rough endosperm (PO:0009089). PATO:0000700 TO_GIT:133 plant_trait_ontology TO:0000717 This is also an endosperm quality trait (TO:0000587). Refers to rough PATO:0000700 A texture quality inhering in a bearer by virtue of the bearer's irregular surface. rough endosperm An endosperm morphology trait (TO:0000575) which is a rough endosperm (PO:0009089). PO:0009089 TO:moorel A grain quality trait (TO:0000162) where the grain (caryopsis fruit; PO:0030104) has a wrinkled appearance, usually from a lack of starch accumulation. wrinkled kernel (narrow) plant_trait_ontology wrinkled seed (related) TO:0000718 wrinkled grain A grain quality trait (TO:0000162) where the grain (caryopsis fruit; PO:0030104) has a wrinkled appearance, usually from a lack of starch accumulation. TO:cooperl A leaf vein morphology trait (TO:0000820) which is the color of a leaf lamina vein (PO:0020138). PATO:0000014 plant_trait_ontology TO:0000719 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. leaf vein color A leaf vein morphology trait (TO:0000820) which is the color of a leaf lamina vein (PO:0020138). PO:0020138 TO:moorel A leaf midvein morphology trait (TO:0000822) which is the color of the leaf midvein (PO:0020139). leaf midvein color (exact) plant_trait_ontology TO:0000720 leaf midrib color A leaf midvein morphology trait (TO:0000822) which is the color of the leaf midvein (PO:0020139). TO:cooperl A leaf morphology trait (TO:0000748) which is a tightly rolled leaf encasing the next emerging leaf (PO:0025034). plant_trait_ontology TO:0000721 If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf adherence A leaf morphology trait (TO:0000748) which is a tightly rolled leaf encasing the next emerging leaf (PO:0025034). Gramene:pankaj_jaiswal PO:0025034 TO:cooperl Traits associated with observing effects on the sporocyte development. plant_trait_ontology TO:0000722 sporocyte development trait Traits associated with observing effects on the sporocyte development. Gramene:pankaj_jaiswal Traits associated with observing effects on the microsporocyte development. plant_trait_ontology TO:0000723 microsporocyte development trait Traits associated with observing effects on the microsporocyte development. Gramene:pankaj_jaiswal Traits associated with observing effects on the megasporocyte development. plant_trait_ontology TO:0000724 megasporocyte development trait Traits associated with observing effects on the megasporocyte development. Gramene:pankaj_jaiswal A count of the number of megasporocyte that is done to determine any increase or decrease in number. plant_trait_ontology TO:0000725 megasporocyte number A count of the number of megasporocyte that is done to determine any increase or decrease in number. Gramene:pankaj_jaiswal A count of the number of microsporocyte that is done to determine any increase or decrease in number. plant_trait_ontology TO:0000726 microsporocyte number A count of the number of microsporocyte that is done to determine any increase or decrease in number. Gramene:pankaj_jaiswal The formation of spores. plant_trait_ontology TO:0000727 sporogenesis The formation of spores. Gramene:pankaj_jaiswal The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle or mitotic cell cycle. GO:0007049 plant_trait_ontology cell division cycle (related) TO:0000728 cell cycle trait The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle or mitotic cell cycle. R:pj The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle. GO:0051321 plant_trait_ontology TO:0000729 Meiosis is a type of cell division in which haploid gametes and spores are formed. The process involves a single duplication of the genetic material followed by two mitotic divisions. As a result each daughter cell receives half the chromosomal content (haploid) as the parent cell. meiotic cell cycle trait The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle. Gramene:pankaj_jaiswal The traits associated with various developmental landmarks and processes of cell division during the mitotic cell cycle. GO:0000278 plant_trait_ontology TO:0000730 Mitosis is a type of cell division in which a cell duplicates its genetic information (DNA), in order to generate two, identical, daughter cells. Each daughter cell receives the same chromosome number / genetic content as the parent cell. mitotic cell cycle trait The traits associated with various developmental landmarks and processes of cell division during the mitotic cell cycle. Gramene:pankaj_jaiswal Measures the lignin content in a plant or plant part. plant_trait_ontology TO:0000731 lignin content Measures the lignin content in a plant or plant part. Gramene:pankaj_jaiswal plant_trait_ontology TO:0000732 lignin monomer content Traits associated with the biosynthesis of lignin in a plant or plant part. GO:0009809 plant_trait_ontology lignin biosynthesis (related) TO:0000733 lignin biosynthesis trait Traits associated with the biosynthesis of lignin in a plant or plant part. Gramene:pankaj_jaiswal A caryopsis fruit morphology trait (TO:0001079) which is the length of a grain (caryopsis fruit; PO:0030104). TO:0002760 PATO:0000122 GRLG (exact) plant_trait_ontology DHULGRLG (related) KERLG (related) kernel length (related) length of dehulled grain (related) length of grain without hull (related) TO:0000734 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. grain length A caryopsis fruit morphology trait (TO:0001079) which is the length of a grain (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal TO:moorel The time between the initiation of two leaves on the shoot apical meristem is called a plastochron. plant_trait_ontology TO:0000735 plastochron The time between the initiation of two leaves on the shoot apical meristem is called a plastochron. Gramene:pankaj_jaiswal A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008). moorel 2012-04-19T10:36:57Z TO_GIT:55 plant_trait_ontology TO:0000736 plant organ morphology trait A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008). PO:0009008 TO:cooperl A whole plant morphology trait (TO:0000398) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003). moorel 2012-04-16T02:18:03Z TO_GIT:53 plant_trait_ontology TO:0000737 Includes visual scoring of plant characteristics such as plant height (TO:0000207), uniformity of plants, plant damage by diseases and insects and lodging incidence (TO:0000068). plant aspect A whole plant morphology trait (TO:0000398) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003). TO:curators A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004). moorel 2012-04-19T10:38:30Z TO_GIT:55 plant_trait_ontology TO:0000738 plant axis morphology trait A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004). PO:0025004 TO:cooperl A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029). moorel 2012-04-19T10:40:33Z TO_GIT:55 plant_trait_ontology TO:0000739 shoot axis morphology trait A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029). PO:0025029 TO:cooperl A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073). moorel 2012-04-19T10:42:49Z TO_GIT:56 plant_trait_ontology TO:0000740 branch morphology trait A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073). PO:0025073 TO:cooperl A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543). moorel 2012-04-19T10:45:11Z TO_GIT:56 plant_trait_ontology TO:0000741 tuber morphology trait A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543). PO:0004543 TO:cooperl A tuber morphology trait (TO:0000741) which is a quality of a subterranean shoot axis tuber (PO:0004547). moorel 2012-04-19T10:46:10Z TO_GIT:56 plant_trait_ontology TO:0000742 A subterranean shoot axis tuber (PO:0004547) is found in plants such as yam (Dioscorea sp.) and potato (Solanum tuberosum). subterranean shoot axis tuber morphology trait A tuber morphology trait (TO:0000741) which is a quality of a subterranean shoot axis tuber (PO:0004547). PO:0004547 TO:cooperl A subterranean shoot axis tuber morphology trait (TO:0000742) which is the shape of a subterranean shoot axis tuber (PO:0004547). moorel 2012-04-19T10:48:44Z tuber shape (broad) PATO:0000052 TO_GIT:56 plant_trait_ontology TO:0000743 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). subterranean shoot axis tuber shape A subterranean shoot axis tuber morphology trait (TO:0000742) which is the shape of a subterranean shoot axis tuber (PO:0004547). PO:0004547 TO:cooperl A subterranean shoot axis tuber morphology trait (TO:0000742) which is the size of a subterranean shoot axis tuber (PO:0004547). moorel 2012-04-19T10:51:20Z tuber size (broad) PATO:0000117 TO_GIT:56 plant_trait_ontology TO:0000744 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. subterranean shoot axis tuber size A subterranean shoot axis tuber morphology trait (TO:0000742) which is the size of a subterranean shoot axis tuber (PO:0004547). PO:0004547 TO:cooperl A subterranean shoot axis tuber morphology trait (TO:0000742) which is the appearance of a subterranean shoot axis tuber (PO:0004547). moorel 2012-04-19T10:54:11Z tuber appearance (broad) TO_GIT:56 plant_trait_ontology TO:0000745 A 1-9 scale is used to score the overall appearance of the tuber, with 1 the lowest score (very poor) and 9 the highest (excellent). subterranean shoot axis tuber appearance A subterranean shoot axis tuber morphology trait (TO:0000742) which is the appearance of a subterranean shoot axis tuber (PO:0004547). PO:0004547 TO:cooperl A subterranean shoot axis tuber morphology trait (TO:0000742) which is the mass of a subterranean shoot axis tuber (PO:0004547). moorel 2012-04-19T10:56:34Z tuber mass (broad) PATO:0000125 TO_GIT:56 plant_trait_ontology TO:0000746 Refer to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. subterranean shoot axis tuber mass A subterranean shoot axis tuber morphology trait (TO:0000742) which is the mass of a subterranean shoot axis tuber (PO:0004547). PO:0004547 TO:cooperl A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001). moorel 2012-04-25T01:09:12Z TO_GIT:60 plant_trait_ontology TO:0000747 phyllome morphology trait A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001). PO:0006001 TO:cooperl A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034). moorel 2012-04-25T01:16:59Z TO_GIT:60 plant_trait_ontology TO:0000748 leaf morphology trait A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034). PO:0025034 TO:cooperl A vascular leaf morphology trait (TO:0000419) which is a quality of a cotyledon (PO:0020030). moorel 2012-04-25T01:18:38Z TO_GIT:61 plant_trait_ontology TO:0000749 cotyledon morphology trait A vascular leaf morphology trait (TO:0000419) which is a quality of a cotyledon (PO:0020030). PO:0020030 TO:cooperl A seedling cotyledon morphology trait (TO:0000774) which is the color of a seedling cotyledon (PO:0025471). moorel 2012-04-25T01:38:00Z PATO:0000014 TO_GIT:61 plant_trait_ontology TO:0000750 seedling cotyledon color A seedling cotyledon morphology trait (TO:0000774) which is the color of a seedling cotyledon (PO:0025471). PO:0025471 TO:cooperl A seedling cotyledon morphology trait (TO:0000774) which is the number of seedling cotyledons (PO:0025471). moorel 2012-04-25T01:43:38Z PATO:0000070 TO_GIT:61 plant_trait_ontology TO:0000751 seedling cotyledon number A seedling cotyledon morphology trait (TO:0000774) which is the number of seedling cotyledons (PO:0025471). PO:0025471 TO:cooperl A seedling cotyledon morphology trait (TO:0000774) which is the size of a seedling cotyledon (PO:0025471). moorel 2012-04-25T01:47:23Z PATO:0000117 TO_GIT:60 plant_trait_ontology TO:0000752 seedling cotyledon size A seedling cotyledon morphology trait (TO:0000774) which is the size of a seedling cotyledon (PO:0025471). PO:0025471 TO:cooperl A plant organ morphology trait (TO:0000736) which is a quality of a coleoptile (PO:0020033). moorel 2012-04-26T12:12:50Z TO_GIT:62 plant_trait_ontology TO:0000753 coleoptile morphology trait A plant organ morphology trait (TO:0000736) which is a quality of a coleoptile (PO:0020033). PO:0020033 TO:cooperl A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001). moorel 2012-04-26T13:09:13Z TO_GIT:63 plant_trait_ontology TO:0000754 cardinal organ part morphology trait A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001). PO:0025001 TO:cooperl TO:moorel A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005). moorel 2012-04-26T13:12:37Z TO_GIT:64 plant_trait_ontology TO:0000755 shoot axis internode morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005). PO:0005005 TO:cooperl A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142). moorel 2012-04-26T13:17:31Z TO_GIT:64 plant_trait_ontology TO:0000756 stem internode morphology trait A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142). PO:0020142 TO:cooperl A stem internode morphology trait (TO:0000756) which is a quality of a hypocotyl (PO:0020100). moorel 2012-04-26T13:21:05Z TO_GIT:64 plant_trait_ontology TO:0000757 hypocotyl morphology trait A stem internode morphology trait (TO:0000756) which is a quality of a hypocotyl (PO:0020100). PO:0020100 TO:cooperl A stem internode morphology trait (TO:0000756) which is a quality of a mesocotyl (PO:0020037). moorel 2012-04-26T13:30:24Z TO_GIT:64 plant_trait_ontology TO:0000758 mesocotyl morphology trait A stem internode morphology trait (TO:0000756) which is a quality of a mesocotyl (PO:0020037). PO:0020037 TO:cooperl A seedling hypocotyl morphology trait (TO:0000769) which is the color of a seedling hypocotyl (PO:0025291). moorel 2012-04-26T13:41:13Z PATO:0000014 TO_GIT:64 plant_trait_ontology TO:0000759 The color of a seedling hypocotyl (PO:0025291) during the hypocotyl emergence stage (PO:0007043). seedling hypocotyl color A seedling hypocotyl morphology trait (TO:0000769) which is the color of a seedling hypocotyl (PO:0025291). PO:0025291 TO:cooperl A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green. moorel 2012-04-30T13:15:20Z PATO:0000014 PATO:0000320 plant_trait_ontology TO:0000760 Refers to green (PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers. seedling hypocotyl green A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green. PATO:0000320 PO:0020100 TO:cooperl A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green with a bronze band. moorel 2012-04-30T13:16:51Z PATO:0000014 PATO:0000320 PATO:0002363 plant_trait_ontology TO:0000761 Refers to green ((PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers) and bronze ((PATO:0002363): A medium brown color with a metallic sheen, resembles the actual alloy bronze). seedling hypocotyl green with bronze band A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green with a bronze band. PATO:0000320 PO:0020100 TO:cooperl A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color purple. moorel 2012-04-30T13:18:41Z PATO:0000014 PATO:0000951 plant_trait_ontology TO:0000762 Refers to purple (PATO:0000951): A color that falls about midway between red and blue in hue. seedling hypocotyl purple A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color purple. PATO:0000951 PO:0020100 TO:cooperl A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color dark purple. moorel 2012-04-30T13:20:07Z PATO:0000014 PATO:0001259 plant_trait_ontology TO:0000763 Refers to dark purple (PATO:0001259): A color consisting of purple color and low brightness. seedling hypocotyl dark purple A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color dark purple. PATO:0001259 PO:0020100 TO:cooperl A cardinal organ part morphology trait (TO:0000754) which is a quality of a stalk (PO:0025066). moorel 2012-04-30T13:27:43Z plant_trait_ontology TO:0000764 stalk morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of a stalk (PO:0025066). PO:0025066 TO:cooperl A stalk morphology trait (TO:0000764) which is a quality of a petiole (PO:0020038). moorel 2012-04-30T13:29:38Z TO_GIT:87 plant_trait_ontology TO:0000765 petiole morphology trait A stalk morphology trait (TO:0000764) which is a quality of a petiole (PO:0020038). PO:0020038 TO:cooperl A petiole morphology trait (TO:0000765) which is the length of a petiole (PO:0020038). moorel 2012-04-30T13:31:22Z PATO:0000122 TO_GIT:87 plant_trait_ontology TO:0000766 petiole length A petiole morphology trait (TO:0000765) which is the length of a petiole (PO:0020038). PO:0020038 TO:cooperl A petiole morphology trait (TO:0000765) which is the shape of a petiole (PO:0020038). moorel 2012-04-30T13:33:50Z PATO:0000052 TO_GIT:87 plant_trait_ontology TO:0000767 petiole shape A petiole morphology trait (TO:0000765) which is the shape of a petiole (PO:0020038). PO:0020038 TO:cooperl A petiole morphology trait (TO:0000765) which is the size of a petiole (PO:0020038). moorel 2012-04-30T13:37:02Z PATO:0000117 TO_GIT:87 plant_trait_ontology TO:0000768 petiole size A petiole morphology trait (TO:0000765) which is the size of a petiole (PO:0020038). PO:0020038 TO:cooperl A hypocotyl morphology trait (TO:0000757) which a seedling hypocotyl (PO:0025291). moorel 2012-05-03T12:51:59Z plant_trait_ontology TO:0000769 Use this term to describe traits for a seedling hypocotyl (PO:002529; a hypocotyl (PO:0020100) that is part of a whole plant (PO:0000003) in the seedling development stage (PO:0007131)). seedling hypocotyl morphology trait A hypocotyl morphology trait (TO:0000757) which a seedling hypocotyl (PO:0025291). PO:0025291 TO:cooperl A bacterial disease resistance (TO:0000315) that is involved in the response to bacterial blight disease. moorel 2012-05-04T13:30:57Z TO_GIT:66 plant_trait_ontology TO:0000770 bacterial blight disease resistance A bacterial disease resistance (TO:0000315) that is involved in the response to bacterial blight disease. TO:cooperl A hypocotyl morphology trait (TO:0000757) which is a quality of an embryo hypocotyl (PO:0025290). moorel 2012-05-04T13:47:12Z plant_trait_ontology TO:0000771 Use this term to describe traits for embryo hypocotyl (A hypocotyl (PO:0020100) that is part of a plant embryo (PO:0009009)). embryo hypocotyl morphology trait A hypocotyl morphology trait (TO:0000757) which is a quality of an embryo hypocotyl (PO:0025290). PO:0025290 TO:cooperl A mesocotyl morphology trait (TO:0000758) which is a quality of a seedling mesocotyl (PO:0025295). moorel 2012-05-04T13:52:34Z plant_trait_ontology TO:0000772 Use this term to descride traits for seedling mesocotyl (PO:0025295: A seedling mesocotyl is an elongation of and embryonic mesocotyl that is part of a whole plant in the seedling phase). seedling mesocotyl morphology trait A mesocotyl morphology trait (TO:0000758) which is a quality of a seedling mesocotyl (PO:0025295). PO:0025295 TO:cooperl A mesocotyl morphology trait (TO:0000758) which is a quality of an embryo mesocotyl (PO:0025294). moorel 2012-05-04T13:57:56Z plant_trait_ontology TO:0000773 embryo mesocotyl morphology trait A mesocotyl morphology trait (TO:0000758) which is a quality of an embryo mesocotyl (PO:0025294). PO:0025294 TO:cooperl A cotyledon morphology trait (TO:0000749) which is a quality of a seedling cotyledon (PO:0025471). moorel 2012-05-11T12:28:54Z TO_GIT:61 plant_trait_ontology TO:0000774 Use this term to describe traits for a seedling cotyledon ((PO:0025471):A cotyledon (PO:0020030) that is part of a whole plant (PO:0000003) in the seedling development stage (PO:0007131)). seedling cotyledon morphology trait A cotyledon morphology trait (TO:0000749) which is a quality of a seedling cotyledon (PO:0025471). PO:0025471 TO:cooperl A cotyledon morphology trait (TO:0000749) which is a quality of a plant embryo cotyledon (PO:0025470). moorel 2012-05-11T12:34:04Z plant_trait_ontology TO:0000775 Use this term to describe traits for an plant embryo cotyledon (PO:0025470): A cotyledon (PO:0020030) that is part of a plant embryo (PO:0009009). plant embryo cotyledon morphology trait A cotyledon morphology trait (TO:0000749) which is a quality of a plant embryo cotyledon (PO:0025470). PO:0025470 TO:cooperl A shoot axis morphology trait (TO:0000739) which is a quality of a peduncle (PO:0009053). moorel 2012-05-17T12:28:05Z TO_GIT:88 plant_trait_ontology TO:0000776 peduncle morphology trait A shoot axis morphology trait (TO:0000739) which is a quality of a peduncle (PO:0009053). PO:0009053 TO:cooperl A peduncle morphology trait (TO:0000776) which is a quality of the presence of cuticular wax (PO:0025386). moorel 2012-05-17T12:29:02Z TO_GIT:88 plant_trait_ontology TO:0000777 peduncle waxiness A peduncle morphology trait (TO:0000776) which is a quality of the presence of cuticular wax (PO:0025386). PO:0025386 TO:cooperl A peduncle morphology trait (TO:0000776) which is the type of a peduncle (PO:0009053). moorel 2012-05-17T13:54:47Z plant_trait_ontology TO:0000778 peduncle type A peduncle morphology trait (TO:0000776) which is the type of a peduncle (PO:0009053). PO:0009053 TO:cooperl A peduncle morphology trait (TO:0000776) which is the color of a peduncle (PO:0009053). moorel 2012-05-17T13:58:50Z PATO:0000014 plant_trait_ontology TO:0000779 Refers to the color ((PATO:0000014):A composite chromatic quality composed of hue, saturation and intensity parts) of a peduncle (PO:0009053). peduncle color A peduncle morphology trait (TO:0000776) which is the color of a peduncle (PO:0009053). PO:0009053 TO:cooperl A peduncle morphology trait (TO:0000776) which is the attachment quality of a peduncle (PO:0009053). moorel 2012-05-17T14:01:07Z PATO:0001435 plant_trait_ontology pod attachment (related) TO:0000780 Refers to the attachment quatlity ((PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity) of a peduncle (PO:0009053). peduncle attachment A peduncle morphology trait (TO:0000776) which is the attachment quality of a peduncle (PO:0009053). PO:0009053 TO:cooperl A seedling hypocotyl morphology trait (TO:0000769) which is the size of a seedling hypocotyl (PO:0025291). moorel 2012-05-17T14:19:59Z PATO:0000117 plant_trait_ontology TO:0000781 seedling hypocotyl size A seedling hypocotyl morphology trait (TO:0000769) which is the size of a seedling hypocotyl (PO:0025291). PO:0025291 TO:cooperl A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122). moorel 2012-05-17T14:39:45Z plant_trait_ontology TO:0000782 inflorescence axis morphology trait A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122). PO:0020122 TO:cooperl An inflorescence axis morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122). moorel 2012-05-17T14:42:14Z PATO:0000117 plant_trait_ontology TO:0000783 Refers to the size ((PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude) of an inflorescence axis (PO:0020122). inflorescence axis size An inflorescence axis morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122). PO:0020122 TO:cooperl A inflorescence axis morphology trait (TO:0000782) which is a quality of an inflorescence branch (PO:0009081). moorel 2012-05-18T13:25:20Z plant_trait_ontology TO:0000784 inflorescence branch morphology trait A inflorescence axis morphology trait (TO:0000782) which is a quality of an inflorescence branch (PO:0009081). PO:0009081 TO:cooperl An inflorescence branch morphology trait (TO:0000784) which is a quality of a tassel branch (PO:0006323). moorel 2012-05-18T13:29:07Z TO_GIT:89 plant_trait_ontology TO:0000785 tassel branch morphology trait An inflorescence branch morphology trait (TO:0000784) which is a quality of a tassel branch (PO:0006323). PO:0006323 TO:cooperl A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082). moorel 2012-05-18T13:35:01Z TO_GIT:57 plant_trait_ontology TO:0000786 reproductive shoot system morphology trait A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082). PO:0025082 TO:cooperl An inflorescence morphology trait (TO:0000373) which is the waxiness of an inflorescence (PO:0009049). moorel 2012-05-18T13:38:09Z plant_trait_ontology TO:0000787 inflorescence waxiness An inflorescence morphology trait (TO:0000373) which is the waxiness of an inflorescence (PO:0009049). PO:0009049 TO:cooperl An inflorescence morphology trait (TO:0000373) which is a quality of a tassel inflorescence (PO:0020126). moorel 2012-05-18T13:45:59Z TO_GIT:89 plant_trait_ontology TO:0000788 tassel inflorescence morphology trait An inflorescence morphology trait (TO:0000373) which is a quality of a tassel inflorescence (PO:0020126). PO:0020126 TO:cooperl A shoot system morphology trait (TO:0000077) which is a quality of a bud (PO:0000055). moorel 2012-05-24T13:52:40Z TO_GIT:91 plant_trait_ontology TO:0000789 bud morphology trait A shoot system morphology trait (TO:0000077) which is a quality of a bud (PO:0000055). PO:0000055 TO:cooperl A bud morphology trait (TO:0000789) which is a quality of an axillary bud (PO:0004709). moorel 2012-05-24T13:55:08Z TO_GIT:91 plant_trait_ontology TO:0000790 axillary bud morphology trait A bud morphology trait (TO:0000789) which is a quality of an axillary bud (PO:0004709). PO:0004709 TO:cooperl An axillary bud morphology trait (TO:0000790) which the size of an axillary bud (PO:0004709). moorel 2012-05-30T13:20:21Z PATO:0000117 TO_GIT:91 plant_trait_ontology TO:0000791 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. axillary bud size An axillary bud morphology trait (TO:0000790) which the size of an axillary bud (PO:0004709). PO:0004709 TO:cooperl An axillary bud morphology trait (TO:0000790) which is the number of axillary buds (PO:0004709) on a stalk or stem. moorel 2012-05-30T13:23:10Z PATO:0001056 TO_GIT:91 plant_trait_ontology TO:0000792 Refer to number (PATO:0001056). axillary bud number An axillary bud morphology trait (TO:0000790) which is the number of axillary buds (PO:0004709) on a stalk or stem. PO:0004709 TO:cooperl An axillary bud morphology trait (TO:0000790) which is the shape of an axillary bud (PO:0004709). moorel 2012-05-30T13:25:45Z PATO:0000052 TO_GIT:91 plant_trait_ontology TO:0000793 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). axillary bud shape An axillary bud morphology trait (TO:0000790) which is the shape of an axillary bud (PO:0004709). PO:0004709 TO:cooperl An axillary bud morphology trait (TO:0000790) which is the prominence of an axillary bud (PO:0004709). moorel 2012-05-30T13:29:13Z PATO:0014820 TO_GIT:91 plant_trait_ontology TO:0000794 Refer to prominent (PATO:0014820): A protruding quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. Promenence categorized by hidden, medium or exposed. axillary bud prominence An axillary bud morphology trait (TO:0000790) which is the prominence of an axillary bud (PO:0004709). PO:0004709 TO:cooperl A tassel inflorescence morphology trait (TO:0000788) which is the color of a tassel inflorescence (PO:0020126). moorel 2012-05-30T13:56:54Z PATO:0000014 TO_GIT:89 plant_trait_ontology TO:0000795 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. tassel inflorescence color A tassel inflorescence morphology trait (TO:0000788) which is the color of a tassel inflorescence (PO:0020126). PO:0020126 TO:cooperl A tassel inflorescence morphology trait (TO:0000788) which is the circumference of a tassel inflorescence (PO:0020126). moorel 2012-05-30T14:00:19Z PATO:0001684 TO_GIT:89 plant_trait_ontology TO:0000796 Refer to circumference PATO:0001684: An 1-D extent quality which is equal to the length of the closed curve of a circle. tassel inflorescence circumference A tassel inflorescence morphology trait (TO:0000788) which is the circumference of a tassel inflorescence (PO:0020126). PO:0020126 TO:cooperl A tassel inflorescence morphology trait (TO:0000788) which is the height of a tassel inflorescence (PO:0020126). moorel 2012-05-30T14:04:13Z PATO:0000119 TO_GIT:89 plant_trait_ontology TO:0000797 Refer to height PATO:0000119: A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. tassel inflorescence height A tassel inflorescence morphology trait (TO:0000788) which is the height of a tassel inflorescence (PO:0020126). PO:0020126 TO:cooperl A tassel inflorescence morphology trait (TO:0000788) which is the length of a tassel inflorescence (PO:0020126). moorel 2012-05-30T14:06:52Z PATO:0000122 TO_GIT:89 plant_trait_ontology TO:0000798 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. tassel inflorescence length A tassel inflorescence morphology trait (TO:0000788) which is the length of a tassel inflorescence (PO:0020126). PMID:28373892 PO:0020126 TO:cooperl A tassel inflorescence morphology trait (TO:0000788) which is the diameter of a tassel inflorescence (PO:0020126). moorel 2012-05-30T14:09:31Z PATO:0001334 TO_GIT:89 plant_trait_ontology TO:0000799 Refer to diameter PATO:0001334: A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. tassel inflorescence diameter A tassel inflorescence morphology trait (TO:0000788) which is the diameter of a tassel inflorescence (PO:0020126). PO:0020126 TO:cooperl An inflorescence morphology trait (TO:0000373) which is the density of an inflorescence (PO:0009049). moorel 2012-06-01T13:16:10Z PATO:0001070 TO_GIT:92 TO_GIT:97 head density (narrow) plant_trait_ontology TO:0000800 Refer to absolute density PATO:0001070. inflorescence density An inflorescence morphology trait (TO:0000373) which is the density of an inflorescence (PO:0009049). PO:0009049 TO:cooperl An inflorescence morphology trait (TO:0000373) which is the depth of an inflorescence (PO:0009049). moorel 2012-06-01T13:18:51Z PATO:0001595 TO_GIT:92 TO_GIT:97 head depth (narrow) plant_trait_ontology TO:0000801 Refer to depth PATO:0001595: A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision. inflorescence depth An inflorescence morphology trait (TO:0000373) which is the depth of an inflorescence (PO:0009049). PO:0009049 TO:cooperl An inflorescence morphology trait (TO:0000373) which is the diameter of an inflorescence (PO:0009049). moorel 2012-06-01T13:20:49Z TO:0000679 PATO:0001334 TO_GIT:92 TO_GIT:97 head diameter (narrow) plant_trait_ontology TO:0000802 Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. inflorescence diameter An inflorescence morphology trait (TO:0000373) which is the diameter of an inflorescence (PO:0009049). PO:0009049 TO:cooperl An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049). moorel 2012-06-01T13:23:12Z PATO:0000128 TO_GIT:92 TO_GIT:97 head weight (narrow) plant_trait_ontology TO:0000803 Refer to weight PATO:0000128:A physical quality inhering in a bearer that has mass near a gravitational body. inflorescence weight An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049). PO:0009049 TO:cooperl An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049). moorel 2012-06-01T13:25:43Z TO:0000637 PATO:0000921 TO_GIT:92 TO_GIT:97 head width (narrow) plant_trait_ontology INFLWD (related) TO:0000804 Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. inflorescence width An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049). PO:0009049 TO:cooperl An inflorescence morphology trait (TO:0000373) which with the texture of an inflorescence (PO:0009049). moorel 2012-06-01T13:28:08Z PATO:0000150 TO_GIT:92 TO_GIT:97 head texture (narrow) plant_trait_ontology TO:0000805 Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. inflorescence texture An inflorescence morphology trait (TO:0000373) which with the texture of an inflorescence (PO:0009049). PO:0009049 TO:cooperl A reproductive shoot system morphology trait (TO:0000786) which is the presence of an inflorescence (PO:0009049). moorel 2012-06-01T13:30:09Z PATO:0000458 TO_GIT:97 plant_trait_ontology TO:0000806 Refer to presence value PATO:0000458. inflorescence presence A reproductive shoot system morphology trait (TO:0000786) which is the presence of an inflorescence (PO:0009049). PO:0009049 TO:cooperl A collective organ part structure morphology trait (TO:0000841) which is a quality of a pseudostem (PO:0025248). moorel 2012-06-01T13:35:28Z TO_GIT:94 TO_GIT:96 plant_trait_ontology TO:0000807 pseudostem morphology trait A collective organ part structure morphology trait (TO:0000841) which is a quality of a pseudostem (PO:0025248). PO:0025248 TO:cooperl A pseudostem morphology trait (TO:0000807) which is the length of a pseudostem (PO:0025248). moorel 2012-06-01T13:38:37Z PATO:0000122 TO_GIT:94 plant_trait_ontology TO:0000808 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. pseudostem length A pseudostem morphology trait (TO:0000807) which is the length of a pseudostem (PO:0025248). PO:0025248 TO:cooperl A pseudostem morphology trait (TO:0000807) which is the shape of a pseudostem (PO:0025248). moorel 2012-06-01T13:40:25Z PATO:0000052 TO_GIT:94 TO_GIT:96 plant_trait_ontology TO:0000809 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). pseudostem shape A pseudostem morphology trait (TO:0000807) which is the shape of a pseudostem (PO:0025248). PO:0025248 TO:cooperl A pseudostem morphology trait (TO:0000807) which is the color of a pseudostem (PO:0025248). moorel 2012-06-01T13:43:28Z PATO:0000014 TO_GIT:94 TO_GIT:96 plant_trait_ontology TO:0000810 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. pseudostem color A pseudostem morphology trait (TO:0000807) which is the color of a pseudostem (PO:0025248). PO:0025248 TO:cooperl A pseudostem morphology trait (TO:0000807) which is the diameter of a pseudostem (PO:0025248). moorel 2012-06-01T13:45:05Z PATO:0001334 TO_GIT:94 TO_GIT:96 plant_trait_ontology TO:0000811 Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. pseudostem diameter A pseudostem morphology trait (TO:0000807) which is the diameter of a pseudostem (PO:0025248). PO:0025248 TO:cooperl A tassel branch morphology trait (TO:0000785) which is the dry weight of a tassel branch (PO:0006323) prior to pollen shed. moorel 2012-06-26T12:37:26Z PATO:0000128 PATO:0001824 TO_GIT:89 plant_trait_ontology TO:0000812 Refer to dry PATO:0001824: A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. Refer to weight PATO:0000128: A physical quality inhering in a bearer that has mass near a gravitational body. tassel branch dry weight A tassel branch morphology trait (TO:0000785) which is the dry weight of a tassel branch (PO:0006323) prior to pollen shed. PO:0006323 TO:cooperl A tassel branch morphology trait (TO:0000785) which is the number of tassel branches (PO:0006323). moorel 2012-06-26T12:40:53Z PATO:0001056 TO_GIT:89 plant_trait_ontology TO:0000813 Refer to number PATO:0001056. tassel branch number A tassel branch morphology trait (TO:0000785) which is the number of tassel branches (PO:0006323). PO:0006323 TO:cooperl A tassel inflorescence morphology trait (TO:0000788) which is the type of tassel inflorescence (PO:0020126). moorel 2012-06-26T12:47:20Z PATO:0000052 TO_GIT:89 plant_trait_ontology TO:0000814 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). tassel inflorescence type A tassel inflorescence morphology trait (TO:0000788) which is the type of tassel inflorescence (PO:0020126). PO:0020126 TO:cooperl A phyllome morphology trait (TO:0000747) which is a quality of a bract (PO:0009055). moorel 2012-06-26T14:29:09Z TO_GIT:109 plant_trait_ontology TO:0000815 bract morphology trait A phyllome morphology trait (TO:0000747) which is a quality of a bract (PO:0009055). PO:0009055 TO:cooperl A bract morphology trait (TO:0000815) which is the quality of an inflorescence bract (PO:0009054). moorel 2012-06-26T14:31:08Z TO_GIT:110 husk (exact) plant_trait_ontology TO:0000816 inflorescence bract morphology trait A bract morphology trait (TO:0000815) which is the quality of an inflorescence bract (PO:0009054). PO:0009054 TO:cooperl An inflorescence bract morphology trait (TO:0000816) which is the length of an inflorescence bract (PO:0009054). moorel 2012-06-26T14:34:28Z PATO:0000122 TO_GIT:110 husk length (exact) plant_trait_ontology TO:0000817 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. inflorescence bract length An inflorescence bract morphology trait (TO:0000816) which is the length of an inflorescence bract (PO:0009054). PO:0009054 TO:cooperl An inflorescence bract morphology trait (TO:0000816) which is the cover of an inflorescence bract (PO:0009054) measured as percentage of plants with ears that are not completely covered by the inflorescence bracts. moorel 2012-06-26T14:38:41Z TO_GIT:110 husk cover (exact) plant_trait_ontology TO:0000818 inflorescence bract cover An inflorescence bract morphology trait (TO:0000816) which is the cover of an inflorescence bract (PO:0009054) measured as percentage of plants with ears that are not completely covered by the inflorescence bracts. PO:0009054 TO:cooperl An inflorescence bract morphology trait (TO:0000819) which is the color of an inflorescence bract (PO:0009054). moorel 2012-06-26T14:41:14Z PATO:0000014 TO_GIT:110 husk color (exact) plant_trait_ontology TO:0000819 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. inflorescence bract color An inflorescence bract morphology trait (TO:0000819) which is the color of an inflorescence bract (PO:0009054). PO:0009054 TO:cooperl A vascular leaf morphology trait (TO:0000419) which is a quality of a leaf lamina vein (PO:0020138). moorel 2012-07-02T11:39:41Z TO_GIT:91 plant_trait_ontology TO:0000820 leaf vein morphology trait A vascular leaf morphology trait (TO:0000419) which is a quality of a leaf lamina vein (PO:0020138). PO:0020138 TO:cooperl A leaf vein morphology trait (TO:0000820) which is the size of a leaf lamina vein (PO:0020138). moorel 2012-07-02T11:45:41Z PATO:0000117 TO_GIT:91 plant_trait_ontology TO:0000821 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. leaf vein size A leaf vein morphology trait (TO:0000820) which is the size of a leaf lamina vein (PO:0020138). PO:0020138 TO:cooperl A leaf vein morphology trait (TO:0000820) which is a quality of a leaf midvein (PO:0020139). moorel 2012-07-02T11:51:56Z TO_GIT:91 leaf midrib morphology trait (exact) plant_trait_ontology TO:0000822 leaf midvein morphology trait A leaf vein morphology trait (TO:0000820) which is a quality of a leaf midvein (PO:0020139). PO:0020139 TO:cooperl A leaf midvein morphology trait (TO:0000822) which is the thickness of a leaf midvein (PO:0020139). moorel 2012-07-02T11:56:25Z PATO:0000915 TO_GIT:91 leaf midrib thickness (exact) plant_trait_ontology TO:0000823 Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. leaf midvein thickness A leaf midvein morphology trait (TO:0000822) which is the thickness of a leaf midvein (PO:0020139). PO:0020139 TO:cooperl A leaf morphology trait (TO:0000748) which is the attitude of a leaf (PO:0025034). moorel 2012-07-02T12:06:18Z TO_GIT:91 plant_trait_ontology TO:0000824 Leaf attitude traits refer to the way a leaf is naturally held on the plant. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf attitude A leaf morphology trait (TO:0000748) which is the attitude of a leaf (PO:0025034). PO:0025034 TO:cooperl A leaf morphology trait (TO:0000748) which is the flexibility of a leaf (PO:0025034). moorel 2012-07-02T12:12:45Z PATO:0001543 TO_GIT:91 plant_trait_ontology TO:0000825 Refer to flexibility (PATO:0001543): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf flexibility A leaf morphology trait (TO:0000748) which is the flexibility of a leaf (PO:0025034). PO:0025034 TO:cooperl A leaf morphology trait (TO:0000748) which is the volume of a leaf (PO:0025034). moorel 2012-07-02T12:21:58Z PATO:0000918 TO_GIT:91 plant_trait_ontology TO:0000826 Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf volume A leaf morphology trait (TO:0000748) which is the volume of a leaf (PO:0025034). PO:0025034 TO:cooperl A leaf lamina morphology trait (TO:0000829) which is the area of a leaf lamina (PO:0020039). moorel 2012-07-02T12:30:01Z PATO:0001323 TO_GIT:91 plant_trait_ontology TO:0000827 Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. leaf lamina area A leaf lamina morphology trait (TO:0000829) which is the area of a leaf lamina (PO:0020039). PO:0020039 TO:cooperl A leaf morphology trait (TO:0000748) which is a quality of the cover of a leaf (PO:0025034). moorel 2012-07-02T12:36:51Z TO_GIT:91 plant_trait_ontology TO:0000828 leaf cover A leaf morphology trait (TO:0000748) which is a quality of the cover of a leaf (PO:0025034). PO:0025034 TO:cooperl A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina (PO:0020039). moorel 2012-07-02T13:36:23Z plant_trait_ontology TO:0000829 leaf lamina morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina (PO:0020039). PO:0020039 A leaf margin morphology trait (TO:0002635)which is a quality of a leaf lamina margin (PO:0025009). moorel 2012-07-02T13:58:07Z TO_GIT:142 plant_trait_ontology TO:0000830 leaf lamina margin morphology trait A leaf margin morphology trait (TO:0002635)which is a quality of a leaf lamina margin (PO:0025009). PO:0025009 TO:moorel A vascular leaf morphology trait (TO:0000419) which is a quality of an adult vascular leaf (PO:0006340). moorel 2012-07-03T11:54:31Z TO_GIT:141 plant_trait_ontology TO:0000831 adult leaf morphology trait A vascular leaf morphology trait (TO:0000419) which is a quality of an adult vascular leaf (PO:0006340). PO:0006340 TO:moorel An adult vascular leaf morphology trait (TO:0000831) which is a quality of a flag leaf (PO:0020103). moorel 2012-07-03T12:06:07Z TO_GIT:141 plant_trait_ontology TO:0000832 flag leaf morphology trait An adult vascular leaf morphology trait (TO:0000831) which is a quality of a flag leaf (PO:0020103). PO:0020103 TO:moorel A cardinal organ part morphology trait (TO:0000754) which is a quality of a organ margin (PO:0025005). moorel 2012-07-03T12:54:18Z TO_GIT:142 plant_trait_ontology TO:0000833 organ margin morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of a organ margin (PO:0025005). PO:0025005 TO:moorel An organ margin morphology trait (TO:0000833) which is a quality of a phyllome margin (PO:0025018). moorel 2012-07-03T12:56:42Z TO_GIT:142 plant_trait_ontology TO:0000834 phyllome margin morphology trait An organ margin morphology trait (TO:0000833) which is a quality of a phyllome margin (PO:0025018). PO:0025018 TO:moorel A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath (PO:0020104). moorel 2012-07-03T13:07:07Z TO_GIT:143 plant_trait_ontology TO:0000835 leaf sheath morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath (PO:0020104). PO:0020104 TO:moorel A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496). moorel 2012-07-09T11:41:28Z TO_GIT:147 plant_trait_ontology TO:0000836 multi-tissue plant structure morphology trait A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496). PO:0025496 TO:moorel A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498). moorel 2012-07-09T13:36:14Z TO_GIT:147 plant_trait_ontology TO:0000837 cardinal part of a multi-tissue plant structure morphology trait A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498). PO:0025498 TO:moorel A portion of plant tissue morphology trait (TO:0000843) which is a quality of the seed coat (PO:0009088). moorel 2012-07-11T11:29:01Z TO_GIT:76 plant_trait_ontology TO:0000838 seed coat morphology trait A portion of plant tissue morphology trait (TO:0000843) which is a quality of the seed coat (PO:0009088). PO:0009088 TO:moorel A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011). moorel 2012-07-12T11:29:26Z TO_GIT:149 plant_trait_ontology TO:0000839 plant structure morphology trait A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011). PO:0009011 TO:cooperl TO:moorel A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497). moorel 2012-07-12T11:42:53Z TO_GIT:150 plant_trait_ontology TO:0000840 collective plant structure morphology trait A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497). PO:0025497 TO:cooperl TO:moorel A collective plant structure morphology trait (TO:0000840) which is a quality of a collective organ part structure (PO:0025269). moorel 2012-07-12T11:49:46Z TO_GIT:150 plant_trait_ontology TO:0000841 collective organ part structure morphology trait A collective plant structure morphology trait (TO:0000840) which is a quality of a collective organ part structure (PO:0025269). PO:0025269 TO:cooperl TO:moorel A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007). moorel 2012-07-12T11:55:17Z TO_GIT:150 plant_trait_ontology TO:0000842 collective plant organ structure morphology trait A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007). PO:0025007 TO:cooperl TO:moorel A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007). moorel 2012-07-12T12:18:33Z TO_GIT:151 plant_trait_ontology TO:0000843 portion of plant tissue morphology trait A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007). PO:0009007 TO:moorel A plant structure morphology trait (TO:0000839) which is a quality of an in vitro plant structure (PO:0000004). moorel 2012-07-12T13:52:02Z TO_GIT:149 plant_trait_ontology TO:0000844 in vitro plant structure morphology trait A plant structure morphology trait (TO:0000839) which is a quality of an in vitro plant structure (PO:0000004). PO:0000004 TO:moorel A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023). moorel 2012-07-13T11:30:15Z TO_GIT:304 plant_trait_ontology TO:0000845 collective phyllome structure morphology trait A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023). PO:0025023 TO:cooperl TO:moorel An inflorescence branch morphology trait (TO:0000784) which is a quality of a second order inflorescence axis (PO:0006321). moorel 2012-07-13T13:09:22Z plant_trait_ontology TO:0000846 inflorescence primary branch morphology trait An inflorescence branch morphology trait (TO:0000784) which is a quality of a second order inflorescence axis (PO:0006321). PO:0006321 TO:moorel An inflorescence morphology trait (TO:0000373) which is a quality of a panicle inflorescence (PO:0030123). moorel 2012-07-13T13:43:22Z TO_GIT:154 plant_trait_ontology panicle related trait (related) TO:0000847 panicle inflorescence morphology trait An inflorescence morphology trait (TO:0000373) which is a quality of a panicle inflorescence (PO:0030123). TO:cooperl TO:moorel A fruit size trait (TO:0002625) which is the diameter of a fruit (PO:0009001). moorel 2012-07-16T12:31:27Z PATO:0001334 plant_trait_ontology TO:0000848 Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. fruit diameter A fruit size trait (TO:0002625) which is the diameter of a fruit (PO:0009001). PO:0009001 TO:moorel A fruit morphology trait (TO:0002629) which is the attachment of a fruit (PO:0009001). moorel 2012-07-16T12:39:53Z PATO:0001435 plant_trait_ontology TO:0000849 Refer to attachment quality (PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. fruit attachment A fruit morphology trait (TO:0002629) which is the attachment of a fruit (PO:0009001). PO:0009001 TO:moorel A fruit morphology trait (TO:0002629) which is the type of a fruit (PO:0009001). moorel 2012-07-16T12:45:56Z plant_trait_ontology TO:0000850 fruit type A fruit morphology trait (TO:0002629) which is the type of a fruit (PO:0009001). PO:0009001 TO:moorel A fruit morphology trait (TO:0002629) which is the presence or absence of hair on a fruit (PO:0009001). moorel 2012-07-16T12:48:45Z PATO:0000454 TO_GIT:131 plant_trait_ontology TO:0000851 Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. fruit hairiness A fruit morphology trait (TO:0002629) which is the presence or absence of hair on a fruit (PO:0009001). PO:0009001 TO:moorel A fruit growth and development trait (TO:0000929) which is the absence or presence of a fruit (PO:0009001). moorel 2012-07-16T12:53:17Z TO_GIT:131 plant_trait_ontology TO:0000852 In cassava fruit set is a visual rating with 0 = absent and 1 = present. fruit set trait A fruit growth and development trait (TO:0000929) which is the absence or presence of a fruit (PO:0009001). TO:moorel A spikelet floret morphology trait (TO:0000274) which is the shape of a spikelet floret (PO:0009082). moorel TO_GIT:105 plant_trait_ontology TO:0000853 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). spikelet floret shape A spikelet floret morphology trait (TO:0000274) which is the shape of a spikelet floret (PO:0009082). PATO:0000052 PO:0009082 TO:cooperl TO:moorel A spikelet floret morphology trait (TO:0000274) which is the size of a spikelet floret (PO:0009082). moorel 2012-07-16T13:08:42Z TO_GIT:105 plant_trait_ontology TO:0000854 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. spikelet floret size A spikelet floret morphology trait (TO:0000274) which is the size of a spikelet floret (PO:0009082). PATO:0000117 PO:0009082 TO:cooperl TO:moorel A spikelet floret morphology trait (TO:0000274) which is the diameter of a spikelet floret (PO:0009082). moorel 2012-07-16T13:11:57Z TO_GIT:105 plant_trait_ontology TO:0000855 Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. spikelet floret diameter A spikelet floret morphology trait (TO:0000274) which is the diameter of a spikelet floret (PO:0009082). PATO:0001334 PO:0009082 TO:cooperl TO:moorel A lodiclue morphology trait (TO:0006009) which is the length of a lodicule (PO:0009036). moorel 2012-07-16T13:47:12Z PATO:0000122 TO_GIT:105 plant_trait_ontology TO:0000856 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. lodicule length A lodiclue morphology trait (TO:0006009) which is the length of a lodicule (PO:0009036). PO:0009036 TO:moorel A lodicule morphology trait (TO:0006009) which is the type of lodicule (PO:0009036). moorel 2012-07-16T13:51:17Z TO_GIT:105 plant_trait_ontology TO:0000857 lodicule type A lodicule morphology trait (TO:0006009) which is the type of lodicule (PO:0009036). PO:0009036 TO:moorel A flower morphology trait (TO:0000499) which is the diameter of a flower (PO:0009046). moorel 2012-07-25T10:16:56Z PATO:0001334 TO_GIT:105 plant_trait_ontology TO:0000858 Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. flower diameter A flower morphology trait (TO:0000499) which is the diameter of a flower (PO:0009046). PO:0009046 TO:moorel A flower morphology trait (TO:0000499) which is the shape of a flower (PO:0009046). moorel 2012-07-25T10:21:29Z PATO:0000052 TO_GIT:105 plant_trait_ontology TO:0000859 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). flower shape A flower morphology trait (TO:0000499) which is the shape of a flower (PO:0009046). PO:0009046 TO:moorel A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046). moorel 2012-07-25T10:27:25Z PATO:0000122 TO_GIT:105 plant_trait_ontology TO:0000860 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. flower length A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046). PO:0009046 TO:moorel A flower morphology trait (TO:0000499) which is a quality of the flower abscission zone (PO:0006502). moorel 2012-07-25T10:30:55Z TO_GIT:105 plant_trait_ontology TO:0000861 flower abscission zone morphology trait A flower morphology trait (TO:0000499) which is a quality of the flower abscission zone (PO:0006502). PO:0006502 TO:moorel A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395). moorel 2012-07-25T10:47:57Z TO_GIT:160 plant_trait_ontology TO:0000862 floral organ morphology trait A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395). PO:0025395 TO:moorel A phyllome morphology trait (TO:0000747) which is a quality of a petal (PO:0009032). moorel 2012-07-25T11:18:56Z TO_GIT:161 plant_trait_ontology TO:0000863 petal morphology trait A phyllome morphology trait (TO:0000747) which is a quality of a petal (PO:0009032). PO:0009032 TO:moorel A phyllome morphology trait (TO:0000747) which is a quality of a sepal (PO:0009031). moorel 2012-07-25T11:22:26Z TO_GIT:161 plant_trait_ontology TO:0000864 sepal morphology trait A phyllome morphology trait (TO:0000747) which is a quality of a sepal (PO:0009031). PO:0009031 TO:moorel A phyllome morphology trait (TO:0000747) which is a quality of a tepal (PO:0009033). moorel 2012-07-25T12:19:50Z TO_GIT:161 plant_trait_ontology TO:0000865 tepal morphology trait A phyllome morphology trait (TO:0000747) which is a quality of a tepal (PO:0009033). PO:0009033 TO:moorel A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026). moorel 2012-07-25T13:04:01Z TO_GIT:162 plant_trait_ontology TO:0000866 sporophyll morphology trait A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026). PO:0009026 TO:moorel A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027). moorel 2012-07-25T13:05:52Z TO_GIT:162 plant_trait_ontology TO:0000867 megasporophyll morphology trait A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027). PO:0009027 TO:moorel A sporophyll morphology trait (TO:0000866) which is a quality of a microsporophyll (PO:0009028). moorel 2012-07-25T13:07:55Z plant_trait_ontology TO:0000868 microsporophyll morphology trait A sporophyll morphology trait (TO:0000866) which is a quality of a microsporophyll (PO:0009028). PO:0009028 TO:moorel An inflorescence bract morphology trait (TO:0000816) which is a quality of a glume (PO:0009039). moorel 2012-08-08T11:50:03Z TO_GIT:166 plant_trait_ontology TO:0000869 glume morphology trait An inflorescence bract morphology trait (TO:0000816) which is a quality of a glume (PO:0009039). PO:0009039 TO:moorel A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves. moorel 2012-10-04T15:42:58Z plant_trait_ontology TO:0000870 leaf yield trait A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves. TO:cooperl A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001). moorel 2012-10-04T15:45:03Z TO_GIT:291 plant_trait_ontology TO:0000871 fruit yield trait A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001). TO:cooperl A leaf attitude (TO:0000824) which is a leaf held upright away from the substrate or host. moorel 2012-10-09T13:55:46Z PATO:0000622 plant_trait_ontology TO:0000872 Refer to erect (PATO:0000622): A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture. leaf erect A leaf attitude (TO:0000824) which is a leaf held upright away from the substrate or host. TO:moorel A leaf attitude (TO:0000824) which is a leaf hanging straight down. moorel 2012-10-09T14:01:24Z PATO:0000631 plant_trait_ontology TO:0000873 Refer to prostrate (PATO:0000631): A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground. leaf prostrate A leaf attitude (TO:0000824) which is a leaf hanging straight down. TO:moorel A leaf attitude (TO:0000824) which is a leaf laying flat against the substrate or host. moorel 2012-10-09T14:04:08Z plant_trait_ontology TO:0000874 leaf penduloum A leaf attitude (TO:0000824) which is a leaf laying flat against the substrate or host. TO:moorel A leaf lamina morphology trait (TO:0000829) which is the splitting of a leaf lamina (PO:0020039). moorel 2012-10-09T14:11:08Z PATO:0001786 TO_GIT:91 plant_trait_ontology TO:0000875 Refer to split (PATO:0001786): A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. leaf lamina splitting A leaf lamina morphology trait (TO:0000829) which is the splitting of a leaf lamina (PO:0020039). PO:0020039 TO:moorel A vascular leaf morphology trait (TO:0000419) which is a quality of a spine leaf (PO:0025173). moorel 2012-10-09T14:46:53Z TO_GIT:158 plant_trait_ontology TO:0000876 spine leaf morphology trait A vascular leaf morphology trait (TO:0000419) which is a quality of a spine leaf (PO:0025173). PO:0025173 TO:moorel A spine leaf morphology trait (TO:0000876) which is the size of the spine leaf (PO:0025173). moorel 2012-10-09T14:48:19Z PATO:0000117 TO_GIT:158 plant_trait_ontology TO:0000877 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. spine leaf size A spine leaf morphology trait (TO:0000876) which is the size of the spine leaf (PO:0025173). PO:0025173 TO:moorel A spine leaf morphology trait (TO:0000876) which is the color of the spine leaf (PO:0025173). moorel 2012-10-09T14:52:10Z PATO:0000014 TO_GIT:158 plant_trait_ontology TO:0000878 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. spine leaf color A spine leaf morphology trait (TO:0000876) which is the color of the spine leaf (PO:0025173). PO:0025173 TO:moorel A stem morphology trait (TO:0000361) which is the presence or absence of hair on the stem (PO:0009047). moorel 2012-10-09T15:17:12Z PATO:0000454 plant_trait_ontology TO:0000879 Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. stem hairiness A stem morphology trait (TO:0000361) which is the presence or absence of hair on the stem (PO:0009047). PO:0009047 TO:moorel A seed coat morphology trait (TO:0000838) which is the length of the seed coat (PO:0009088). moorel 2012-10-09T15:27:02Z PATO:0000122 TO_GIT:76 plant_trait_ontology TO:0000880 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. seed coat length A seed coat morphology trait (TO:0000838) which is the length of the seed coat (PO:0009088). PO:0009088 TO:moorel A flower morphology trait (TO:0000499) which is the type of a flower (PO:0009046). moorel 2012-10-11T11:30:45Z TO_GIT:175 plant_trait_ontology TO:0000881 flower type A flower morphology trait (TO:0000499) which is the type of a flower (PO:0009046). PO:0009046 TO:moorel A flower type trait (TO:0000881) which is a flower (PO:0009046) that does not open and favors self pollination. moorel 2012-10-11T11:33:35Z TO_GIT:175 plant_trait_ontology TO:0000882 cleistogamus flower A flower type trait (TO:0000881) which is a flower (PO:0009046) that does not open and favors self pollination. PO:0009046 TO:moorel A flower type trait (TO:0000881) which is a flower (PO:0009046) that opens exposing anthers (PO:0009066) and/or pistil. moorel 2012-10-11T11:37:02Z TO_GIT:175 plant_trait_ontology TO:0000883 chasmogamous flower A flower type trait (TO:0000881) which is a flower (PO:0009046) that opens exposing anthers (PO:0009066) and/or pistil. PO:0009046 PO:0009066 TO:moorel A stalk morphology trait (TO:0000764) which is a quality of a petiolule (PO:0020050). moorel 2012-10-11T11:53:06Z TO_GIT:176 plant_trait_ontology TO:0000884 petiolule morphology trait A stalk morphology trait (TO:0000764) which is a quality of a petiolule (PO:0020050). PO:0020050 TO:moorel A petiolule morphology trait (TO:0000884) which is the color of the petiolule (PO:0020050). moorel 2012-10-11T11:55:06Z PATO:0000014 TO_GIT:176 plant_trait_ontology TO:0000885 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. petiolule color A petiolule morphology trait (TO:0000884) which is the color of the petiolule (PO:0020050). PO:0020050 TO:moorel A petiolule morphology trait (TO:0000884) which is the shape of the petiolule (PO:0020050). moorel 2012-10-11T12:02:02Z PATO:0000052 TO_GIT:176 plant_trait_ontology TO:0000886 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). petiolule shape A petiolule morphology trait (TO:0000884) which is the shape of the petiolule (PO:0020050). PO:0020050 TO:moorel A petiolule morphology trait (TO:0000884) which is the length of the petiolule (PO:0020050). moorel 2012-10-11T12:05:48Z PATO:0000122 TO_GIT:176 plant_trait_ontology TO:0000887 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. petiolule length A petiolule morphology trait (TO:0000884) which is the length of the petiolule (PO:0020050). PO:0020050 TO:moorel A seed coat morphology trait (TO:0000838) which is the luster of the seed coat (PO:0009088). moorel 2012-10-11T12:26:54Z TO_GIT:148 TO_GIT:76 plant_trait_ontology TO:0000888 seed coat luster A seed coat morphology trait (TO:0000838) which is the luster of the seed coat (PO:0009088). PO:0009088 TO:moorel A seed coat morphology trait (TO:0000838) which is the hardness of the seed coat (PO:0009088). moorel 2012-10-11T12:29:15Z PATO:0000048 TO_GIT:148 TO_GIT:76 plant_trait_ontology TO:0000889 Refer to hardness (PATO:0000048): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. seed coat hardness A seed coat morphology trait (TO:0000838) which is the hardness of the seed coat (PO:0009088). PO:0009088 TO:moorel A seed coat morphology trait (TO:0000838) which is the relative proportion of seed coat (PO:0009088) to cotyledon (PO:0020030). moorel 2012-10-11T12:32:02Z PATO:0001470 TO_GIT:148 plant_trait_ontology TO:0000890 Refer to proportion (PATO:0001470): A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity. seed coat proportion A seed coat morphology trait (TO:0000838) which is the relative proportion of seed coat (PO:0009088) to cotyledon (PO:0020030). PO:0009088 PO:0020030 TO:moorel A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034). moorel 2012-10-11T12:50:20Z plant_trait_ontology TO:0000891 leaf wet weight A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034). PO:0025034 TO:moorel A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047). moorel 2012-11-20T15:35:42Z PATO:0000117 TO_GIT:157 core size (narrow) plant_trait_ontology stalk size (related) TO:0000892 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. stem size A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047). PO:0009047 TO:moorel A stem morphology trait (TO:0000361) which is the shape of a stem (PO:0009047). moorel 2012-11-20T15:44:05Z PATO:0000052 TO_GIT:80 core shape (narrow) plant_trait_ontology TO:0000893 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). stem shape A stem morphology trait (TO:0000361) which is the shape of a stem (PO:0009047). PO:0009047 TO:moorel An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001). moorel 2013-01-24T14:03:35Z PATO:0001555 TO_GIT:178 accessory fruit number (narrow) plant_trait_ontology TO:0000894 Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. fruit number trait An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001). PO:0009001 TO:moorel A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001). moorel 2013-01-24T14:15:17Z TO_GIT:179 plant_trait_ontology TO:0000895 fruit harvest index A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001). PO:0009001 TO:moorel A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034). moorel 2013-01-24T14:19:38Z TO_GIT:179 plant_trait_ontology TO:0000896 leaf harvest index A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034). PO:0025034 TO:moorel A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010). moorel 2013-01-24T14:21:24Z TO_GIT:179 plant_trait_ontology TO:0000897 seed harvest index A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010). PO:0009010 TO:moorel A cardinal organ part morphology trait (TO:0000754) which is a quality of a root nodule (PO:0003023). moorel 2013-01-24T14:24:48Z TO_GIT:181 plant_trait_ontology TO:0000898 root nodule morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of a root nodule (PO:0003023). PO:0003023 TO:moorel A root nodule morphology trait (TO:0000898) which is the weight of a root nodule (PO:0003023). moorel 2013-01-24T14:26:46Z PATO:0000128 TO_GIT:181 plant_trait_ontology TO:0000899 Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body. root nodule weight A root nodule morphology trait (TO:0000898) which is the weight of a root nodule (PO:0003023). PO:0003023 TO:moorel A root nodule morphology trait (TO:0000898) which is the number of root nodules (PO:0003023). moorel 2013-01-24T14:30:27Z PATO:0001555 TO_GIT:181 plant_trait_ontology TO:0000900 Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. root nodule number A root nodule morphology trait (TO:0000898) which is the number of root nodules (PO:0003023). PO:0003023 TO:moorel A fruit color (TO:0002617) which is the color of a fruit (PO:0009001) that has been dried. moorel 2013-01-24T14:37:51Z PATO:0000014 PATO:0001801 TO_GIT:180 dry pod color (narrow) plant_trait_ontology TO:0000901 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. Refer to decreased water composition (PATO:0001801): A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. dry fruit color A fruit color (TO:0002617) which is the color of a fruit (PO:0009001) that has been dried. PO:0009001 TO:moorel A seed coat morphology trait (TO:0000838) which is the bleeding of pigment in a seed coat (PO:0009088). moorel 2013-01-24T14:44:11Z TO_GIT:148 plant_trait_ontology TO:0000902 seed coat pigment bleeding A seed coat morphology trait (TO:0000838) which is the bleeding of pigment in a seed coat (PO:0009088). PO:0009088 TO:moorel A seed coat morphology trait (TO:0000838) which is the texture of a seed coat (PO:0009088). moorel 2013-01-24T14:45:40Z PATO:0000150 TO_GIT:147 plant_trait_ontology TO:0000903 Refer to texture (PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. seed coat texture A seed coat morphology trait (TO:0000838) which is the texture of a seed coat (PO:0009088). PO:0009088 TO:moorel A seed coat morphology trait (TO:0000838) which is the pattern of a seed coat (PO:0009088). moorel 2013-01-24T14:48:21Z PATO:0000019 TO_GIT:148 plant_trait_ontology TO:0000904 Refer to color pattern (PATO:0000019): A chromatic property that is the relative position of different hues or degrees of saturation. seed coat pattern A seed coat morphology trait (TO:0000838) which is the pattern of a seed coat (PO:0009088). PO:0009088 TO:moorel A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010). moorel 2013-01-28T13:14:23Z TO_GIT:182 plant_trait_ontology TO:0000905 seed yield trait A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010). PO:0009010 TO:cooperl TO:moorel A portion of plant tissue morphology trait (TO:0000843) which is a quality of the exocarp (PO:0009085). cooperl 2013-04-28T15:48:43Z TO_GIT:117 TO_GIT:295 epicarp morphology trait (exact) plant_trait_ontology TO:0000906 exocarp morphology trait A portion of plant tissue morphology trait (TO:0000843) which is a quality of the exocarp (PO:0009085). PO:cooperl An exocarp morphology trait (TO:0000906) which is the thickness of the exocarp (PO:0009085). cooperl 2013-04-28T16:05:01Z PATO:0000915 TO_GIT:117 TO_GIT:295 rind thickness (exact) plant_trait_ontology TO:0000907 exocarp thickness An exocarp morphology trait (TO:0000906) which is the thickness of the exocarp (PO:0009085). TO:cooperl A fruit morphology trait (TO:0002617) which is the hollowness of a fruit (PO:0009001). cooperl 2013-04-28T16:18:53Z TO_GIT:117 plant_trait_ontology TO:0000908 fruit hollowness A fruit morphology trait (TO:0002617) which is the hollowness of a fruit (PO:0009001). PATO:0002078 PO:0009001 PO:cooperl A fruit color trait (TO:0002617) which is the uniformity of the color (PATO:0000122) of the fruit (PO:0009001) . cooperl 2013-04-28T16:33:44Z TO_GIT:117 plant_trait_ontology TO:0000909 The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end. fruit color uniformity A fruit color trait (TO:0002617) which is the uniformity of the color (PATO:0000122) of the fruit (PO:0009001) . PATO:0000122 PO:cooperl A fruit flavor trait (TO:0002694) which is the bitter fruit flavor. cooperl 2013-04-28T16:46:02Z TO_GIT:117 plant_trait_ontology TO:0000910 Need PATO quality: bitter - has been requested. fruit bitterness trait A fruit flavor trait (TO:0002694) which is the bitter fruit flavor. TO:cooperl A plant structure morphology trait (TO:0000839) which is a quality of a trichome (PO:0000282). moorel 2013-06-18T14:29:56Z TO_GIT:228 plant_trait_ontology TO:0000911 trichome morphology trait A plant structure morphology trait (TO:0000839) which is a quality of a trichome (PO:0000282). PO:0000282 TO:moorel A trichome morphology trait (TO:0000911) which is a trichome (PO:0000282) lying close to and flat against a surface of a plant structure (PO:0009011). moorel 2013-06-18T14:31:49Z TO_GIT:228 plant_trait_ontology TO:0000912 trichome appressed A trichome morphology trait (TO:0000911) which is a trichome (PO:0000282) lying close to and flat against a surface of a plant structure (PO:0009011). PO:0000282 TO:moorel A trichome morphology trait (TO:0000911) which is a needle-shaped trichome (PO:0000282). moorel 2013-06-19T09:56:45Z TO_GIT:228 plant_trait_ontology TO:0000913 trichome acircular A trichome morphology trait (TO:0000911) which is a needle-shaped trichome (PO:0000282). PO:0000282 TO:moorel A trichome morphology trait (TO:0000911) which is a gray-haired and hoary trichome (PO:0000282). moorel 2013-06-19T09:59:44Z TO_GIT:228 plant_trait_ontology TO:0000914 trichome canescent A trichome morphology trait (TO:0000911) which is a gray-haired and hoary trichome (PO:0000282). PO:0000282 TO:moorel A trichome morphology trait (TO:0000911) which is a very slender or hair-like trichome (PO:0000282). moorel 2013-06-19T10:02:55Z TO_GIT:228 plant_trait_ontology TO:0000915 trichome capillary A trichome morphology trait (TO:0000911) which is a very slender or hair-like trichome (PO:0000282). PO:0000282 TO:moorel A trichome morphology trait (TO:0000911) which is a club-shaped trichome (PO:0000282). moorel 2013-06-19T10:06:59Z TO_GIT:228 plant_trait_ontology TO:0000916 Clavate (PATO:0001883): A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end. trichome clavate A trichome morphology trait (TO:0000911) which is a club-shaped trichome (PO:0000282). PO:0000282 TO:moorel A trichome morphology trait (TO:0000911) which is a sword-shaped trichome (PO:0000282). moorel 2013-06-19T10:14:01Z TO_GIT:228 plant_trait_ontology TO:0000917 Blade-like (PATO:0002235): A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. Synonym: ensiform. trichome ensiform A trichome morphology trait (TO:0000911) which is a sword-shaped trichome (PO:0000282). PO:0000282 TO:moorel A trichome morphology trait (TO:0000911) which is a rough trichome (PO:0000282). moorel 2013-06-19T10:18:46Z TO_GIT:228 plant_trait_ontology TO:0000918 trichome hirsute A trichome morphology trait (TO:0000911) which is a rough trichome (PO:0000282). PO:0000282 TO:moorel A caryopsis fruit morphology trait (TO:0001079) which is the weight of a caryopsis fruit (grain or kernel; PO:0030104). cooperl 2013-11-14T14:06:21Z TO_GIT:242 GRWT (exact) caryopsis fruit weight (exact) kernel weight (exact) 20 kernel weight (narrow) plant_trait_ontology kwt (related) TO:0000919 Grain weight (TO:0000919) is a general parent term, covering the weights of various types of caryopsis fruits (PO:0030104), and doesn't specify if they are hulled or dehulled. grain weight A caryopsis fruit morphology trait (TO:0001079) which is the weight of a caryopsis fruit (grain or kernel; PO:0030104). TO:cooperl kwt (related) MaizeGDB:78154 A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342). cooperl 2013-11-15T13:32:29Z TO_GIT:244 plant_trait_ontology TO:0000920 infructescence morphology trait A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342). TO:cooperl A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242). cooperl 2013-11-15T15:54:24Z TO_GIT:243 plant_trait_ontology TO:0000921 infructescence axis morphology trait A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242). TO:cooperl An infructescence axis morphology trait (TO:0000921) which is the weight of a cob. moorel 2014-01-07T12:48:27Z PATO:0000125 TO_GIT:109 plant_trait_ontology TO:0000922 Refers to mass (PATO:0000125) A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. cob weight An infructescence axis morphology trait (TO:0000921) which is the weight of a cob. TO:moorel An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597). cooperl 2013-12-10T20:53:38Z MaizeGDB_QTL:65408 PATO:0000125 TO_GIT:244 plant_trait_ontology earwt (related) TO:0000923 Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. ear weight An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597). TO:cooperl earwt (related) MaizeGDB:??? An infructescence axis morphology trait (TO:0000921) which is the color of a cob. moorel 2014-01-07T12:50:18Z PATO:0000014 TO_GIT:109 plant_trait_ontology cobpig (related) TO:0000924 Refers to color (PATO:0000014) A composite chromatic quality composed of hue, saturation and intensity parts. cob color An infructescence axis morphology trait (TO:0000921) which is the color of a cob. TO:moorel cobpig (related) MaizeGDB_QTL:67275 A leaf morphology trait (TO:0000748) which is a quality of a non-vascular leaf (PO:0025075). moorel 2014-01-07T13:45:07Z TO_GIT:246 plant_trait_ontology TO:0000925 non-vascular leaf morphology trait A leaf morphology trait (TO:0000748) which is a quality of a non-vascular leaf (PO:0025075). PO:0025075 TO:moorel A plant structure growth and development trait (TO:0000928) that has as primary participant a multi-tissue plant structure (PO:0025496). cooperl 2014-01-16T12:55:32Z TO_GIT:250 plant_trait_ontology TO:0000926 multi-tissue plant structure growth and development trait A plant structure growth and development trait (TO:0000928) that has as primary participant a multi-tissue plant structure (PO:0025496). TO:cooperl A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a plant organ (PO:0009008). cooperl 2014-01-16T12:57:38Z TO_GIT:251 plant_trait_ontology TO:0000927 plant organ growth and development trait A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a plant organ (PO:0009008). TO:cooperl A plant growth and development trait (TO:0000357) which is a quality of a plant structure development stage (PO:0009028). cooperl 2014-01-16T13:36:38Z TO_GIT:252 plant_trait_ontology TO:0000928 plant structure growth and development trait A plant growth and development trait (TO:0000357) which is a quality of a plant structure development stage (PO:0009028). TO:cooperl A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a fruit (PO:0009001). cooperl 2014-01-16T14:38:50Z TO_GIT:255 plant_trait_ontology TO:0000929 fruit growth and development trait A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a fruit (PO:0009001). TO:cooperl A seed growth and development trait (TO:0000653) which is the extent of seed shattering based on the development of an abscission zone (PO:0000146). moorel 2014-01-21T10:24:42Z TO_GIT:249 plant_trait_ontology hilum abscission (related) TO:0000930 seed shattering A seed growth and development trait (TO:0000653) which is the extent of seed shattering based on the development of an abscission zone (PO:0000146). PO:0000146 TO:moorel hilum abscission (related) SOY:0001341 A plant quality trait (TO:0000597) which is the commercial and /or economical value of a seed (PO:0009010) , or its overall improvement. cooperl 2014-03-17T11:41:08Z TO_GIT:209 plant_trait_ontology TO:0000931 seed quality trait A plant quality trait (TO:0000597) which is the commercial and /or economical value of a seed (PO:0009010) , or its overall improvement. TO:cooperl A hexose content trait (TO:0000307) which is the amount of mannose (CHEBI:37684). cooperl 2014-04-30T11:28:13Z TO_GIT:259 D-mannose content (narrow) plant_trait_ontology man content (related) TO:0000932 mannose content A hexose content trait (TO:0000307) which is the amount of mannose (CHEBI:37684). TO:cooperl A growth and development trait (TO:0000357) which is the timing of the occurrence of plant structure development stages (PO:0009012) and the relevant biological processes (GO:0008150). cooperl 2014-05-05T17:32:19Z TO_GIT:266 plant_trait_ontology TO:0000933 plant phenological trait A growth and development trait (TO:0000357) which is the timing of the occurrence of plant structure development stages (PO:0009012) and the relevant biological processes (GO:0008150). TO:cooperl A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (PECO:0007199) and short photoperiod (PECO:0007200) environments. cooperl 2014-05-06T16:41:00Z MaizeGDB_QTL:64797 TO_GIT:265 flowering time response to photoperiod trait (exact) plant_trait_ontology TO:0000934 photoperiod-sensitive flowering time trait A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (PECO:0007199) and short photoperiod (PECO:0007200) environments. TO:cooperl A grain weight (TO:0000919) which is the total weight of all kernels on the primary ear infructescence (PO:0025597). cooperl 2014-06-27T08:27:30Z OBO_S2F_TO:280 plant_trait_ontology TO:0000935 kernel weight per ear A grain weight (TO:0000919) which is the total weight of all kernels on the primary ear infructescence (PO:0025597). MaizeGDB:Mary_Schaeffer TO:cooperl A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant. cooperl 2014-09-02T16:37:45Z TO_GIT:285 plant_trait_ontology seeds per panicle (related) TO:0000936 infructescence yield trait A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant. TO:cooperl An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597). cooperl 2014-09-02T17:16:07Z MaizeGDB_QTL:99383 TO_GIT:283 plant_trait_ontology TO:0000937 Often calculated as the number of kernel rows in the middle of the ear times number of kernels per row. Also calculated based on total weight of kernels for an ear and average weight/kernel (Hung et al 2012). kernel number per ear An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597). PMID:22027895 TO:cooperl An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597). cooperl 2014-09-02T18:07:39Z MaizeGDB_QTL:78114 TO_GIT:284 plant_trait_ontology 78114 (related) TO:0000938 kernel number per row An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597). TO:cooperl An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) from the most distal branch point to the tip of the tassel inflorescence (PO:0020126). cooperl 2014-09-08T11:52:52Z TO_GIT:272 first order tassel inflorescence axis length (exact) plant_trait_ontology TO:0000939 tassel spike length An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) from the most distal branch point to the tip of the tassel inflorescence (PO:0020126). PMID:28373892 TO:cooperl An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) where the tassel inflorescence branches (PO:0006323) arise. cooperl 2014-09-08T11:53:39Z TO_GIT:272 plant_trait_ontology TO:0000940 tassel branch zone length An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) where the tassel inflorescence branches (PO:0006323) arise. PMID:28373892 TO:cooperl An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597). cooperl 2014-09-08T14:05:22Z MaizeGDB_QTL:65770 TO_GIT:288 plant_trait_ontology TO:0000941 Used to look at QTL traits in crosses between Teosinte and maize. In order to compare the two types of ears, the kernel row number (TO:0000687; maize) is divided by two. rank number per ear An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597). TO:cooperl A portion of plant tissue morphology trait (TO:0000843) which is the qualities of the aleurone layer (PO:0005360). cooperl 2015-07-21T15:15:42Z TO_GIT:291 plant_trait_ontology TO:0000942 aleurone layer morphology trait A portion of plant tissue morphology trait (TO:0000843) which is the qualities of the aleurone layer (PO:0005360). TO:cooperl An aleurone layer appearance (TO:0000944) that is the color of the aleurone layer (PO:0005360). cooperl 2015-07-21T15:16:24Z PATO:0000014 TO_GIT:291 plant_trait_ontology TO:0000943 aleurone layer color An aleurone layer appearance (TO:0000944) that is the color of the aleurone layer (PO:0005360). TO:cooperl An aleurone layer morphology trait (TO:0000942) that is the appearance of the aleurone layer (PO:0005360). cooperl 2015-07-21T16:08:50Z TO_GIT:291 plant_trait_ontology TO:0000944 aleurone layer appearance An aleurone layer morphology trait (TO:0000942) that is the appearance of the aleurone layer (PO:0005360). TO:cooperl A portion of plant tissue morphology trait (TO:0000843) which is a quality of the pericarp (PO:0009084). cooperl 2015-07-22T15:54:55Z TO_GIT:292 plant_trait_ontology TO:0000945 pericarp morphology trait A portion of plant tissue morphology trait (TO:0000843) which is a quality of the pericarp (PO:0009084). TO:cooperl A portion of plant tissue morphology trait (TO:0000843) which is a quality of the endocarp (PO:0009086). austinmeier 2015-07-22T17:16:05Z TO_GIT:293 plant_trait_ontology TO:0000946 endocarp morphology trait A portion of plant tissue morphology trait (TO:0000843) which is a quality of the endocarp (PO:0009086). TO:austin_meier A plant structure growth and development trait (TO:0000928) which is a quality of a whole plant development stage (PO:0007033). johnseth 2015-07-23T14:28:41Z TO_GIT:297 plant_trait_ontology TO:0000947 whole plant growth and development trait A plant structure growth and development trait (TO:0000928) which is a quality of a whole plant development stage (PO:0007033). TO:ethan_johnson A portion of plant tissue morphology trait (TO:0000843) which is a quality of a mesocarp (PO:0009087). austinmeier 2015-07-22T17:28:39Z TO_GIT:294 plant_trait_ontology TO:0000948 mesocarp morphology trait A portion of plant tissue morphology trait (TO:0000843) which is a quality of a mesocarp (PO:0009087). TO:austin_meier A whole plant growth and development trait (TO:0000947) which is a quality of a seedling development stage (PO:0007131). johnseth 2015-07-23T14:39:53Z TO_GIT:298 plant_trait_ontology TO:0000949 seedling growth and development trait A whole plant growth and development trait (TO:0000947) which is a quality of a seedling development stage (PO:0007131). TO:ethan_johnson A collective phyllome structure morphology trait (TO:0000845) that is a quality of a corolla (PO:0009059). cooperl 2015-07-27T14:48:47Z TO_GIT:299 plant_trait_ontology TO:0000950 corolla morphology trait A collective phyllome structure morphology trait (TO:0000845) that is a quality of a corolla (PO:0009059). TO:cooperl A corolla morphology trait (TO:0000950) that is the color of a corolla (PO:0009059). cooperl 2015-07-27T15:41:16Z PATO:0000014 TO_GIT:299 plant_trait_ontology TO:0000951 corolla color A corolla morphology trait (TO:0000950) that is the color of a corolla (PO:0009059). TO:cooperl A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047). cooperl 2015-08-27T15:05:35Z PATO:0000128 TO_GIT:157 stalk weight (narrow) plant_trait_ontology TO:0000952 stem weight A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047). TO:cooperl A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047). johnseth 2015-08-27T16:03:16Z PATO:0001555 TO_GIT:57 stalk number (narrow) plant_trait_ontology TO:0000953 stem number A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047). TO:cooperl An inflorescence branch morphology trait (TO:0000784) which is a quality of a spikelet rachilla (PO:0009080). johnseth 2015-10-19T14:35:34Z PATO:0000051 TO_GIT:106 plant_trait_ontology TO:0000954 spikelet rachilla morphology trait An inflorescence branch morphology trait (TO:0000784) which is a quality of a spikelet rachilla (PO:0009080). TO:Ethan_Johnson A metabolite content related trait (TO:0000281) which is the amount of cyanide (CHEBI:17514) occurring in a plant structure (PO:0009011). CHEBI:17514 plant_trait_ontology TO:0000955 cyanide content A metabolite content related trait (TO:0000281) which is the amount of cyanide (CHEBI:17514) occurring in a plant structure (PO:0009011). TO:cooperl An infructescence axis morphology trait (TO:0000921) which is the shape of a cob. johnseth 2015-09-01T14:35:54Z PATO:0000052 TO_GIT:109 plant_trait_ontology TO:0000958 cob shape An infructescence axis morphology trait (TO:0000921) which is the shape of a cob. TO:ejohnson An infructescence axis morphology trait (TO:0000921) which is the length of a cob. johnseth 2015-09-01T14:44:47Z PATO:0000122 TO_GIT:109 plant_trait_ontology TO:0000959 cob length An infructescence axis morphology trait (TO:0000921) which is the length of a cob. TO:ejohnson An infructescence axis morphology trait (TO:0000921) which is the width of a cob. johnseth 2015-09-01T14:51:33Z PATO:0000921 TO_GIT:109 plant_trait_ontology TO:0000960 cob width An infructescence axis morphology trait (TO:0000921) which is the width of a cob. TO:ejohnson An infructescence axis morphology trait (TO:0000921) which is the area of a cob. johnseth 2015-09-01T15:00:53Z PATO:0001323 TO_GIT:109 plant_trait_ontology TO:0000961 cob area An infructescence axis morphology trait (TO:0000921) which is the area of a cob. TO:ejohnson An infructescence axis morphology trait (TO:0000921) which is the angle of a cob. johnseth 2015-09-01T15:15:37Z PATO:0002326 TO_GIT:109 plant_trait_ontology TO:0000962 cob angle An infructescence axis morphology trait (TO:0000921) which is the angle of a cob. TO:ejohnson An ear infructescence morphology trait (TO:0000976) which is the color of an ear infructescence (PO:0025597). johnseth 2015-09-01T15:52:16Z PATO:0000014 TO_GIT:132 ear infructescence color (exact) plant_trait_ontology TO:0000963 ear color An ear infructescence morphology trait (TO:0000976) which is the color of an ear infructescence (PO:0025597). TO:Ethan_Johnson An ear infructescence morphology trait (TO:0000976) which is the shape of an ear infructescence (PO:0025597). johnseth 2015-09-01T16:07:23Z PATO:0000052 TO_GIT:132 ear infructescence shape (exact) plant_trait_ontology TO:0000964 ear shape An ear infructescence morphology trait (TO:0000976) which is the shape of an ear infructescence (PO:0025597). TO:Ethan_Johnson An ear infructescence morphology trait (TO:0000976) which is the qualitative rating of the harvested ear infructescence (PO:0025597). johnseth 2015-09-01T16:12:33Z TO_GIT:132 ear infructescence aspect (exact) plant_trait_ontology TO:0000965 ear aspect An ear infructescence morphology trait (TO:0000976) which is the qualitative rating of the harvested ear infructescence (PO:0025597). TO:Ethan_Johnson An ear infructescence morphology trait (TO:0000976) which is the ratio of ear infructescence position (TO:0000683) to plant height (TO:0000207). johnseth 2015-09-01T16:17:13Z TO_GIT:132 plant_trait_ontology ear position ratio (related) TO:0000966 ear infructescence position ratio An ear infructescence morphology trait (TO:0000976) which is the ratio of ear infructescence position (TO:0000683) to plant height (TO:0000207). TO:Ethan_Johnson TO:cooperl A seed morphology trait (TO:0000184) which is a quality of a hilum (PO:0020063). meiera 2015-10-13T11:16:35Z TO_GIT:81 plant_trait_ontology TO:0000967 hilum morphology trait A seed morphology trait (TO:0000184) which is a quality of a hilum (PO:0020063). TO:austin_meier A hilum morphology trait (TO:0000967) which is the color of a hilum (PO:0020063). meiera 2015-10-13T11:19:20Z TO_GIT:81 plant_trait_ontology TO:0000968 hilum color A hilum morphology trait (TO:0000967) which is the color of a hilum (PO:0020063). TO:austin_meier An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136). cooperl 2015-10-16T14:24:59Z TO_GIT:97 plant_trait_ontology TO:0000969 ear inflorescence morphology trait An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136). TO:cooperl An inflorescence density (TO:0000800) trait which is a quality of a panicle inflorescence (PO:0030123). cooperl 2015-10-16T15:23:56Z TO_GIT:97 plant_trait_ontology TO:0000970 panicle density An inflorescence density (TO:0000800) trait which is a quality of a panicle inflorescence (PO:0030123). TO:cooperl An inflorescence morphology trait (TO:0000373) which is the presence or absence of hairs on an inflorescence (PO:0009049). cooperl 2015-10-16T15:53:14Z PATO:0000454 TO_GIT:97 head hairiness (narrow) plant_trait_ontology TO:0000971 inflorescence hairiness An inflorescence morphology trait (TO:0000373) which is the presence or absence of hairs on an inflorescence (PO:0009049). TO:cooperl An inflorescence branch morphology trait (TO:0000784) which is the length of a spikelet rachilla (PO:0009080). johnseth 2015-10-19T14:40:20Z rachilla length (broad) PATO:0000122 TO_GIT:106 plant_trait_ontology TO:0000972 spikelet rachilla length An inflorescence branch morphology trait (TO:0000784) which is the length of a spikelet rachilla (PO:0009080). TO:Ethan_Johnson An inflorescence branch morphology trait (TO:0000784) which is the shape of a spikelet rachilla (PO:0009080). johnseth 2015-10-19T14:46:04Z rachilla shape (broad) PATO:0000052 TO_GIT:106 plant_trait_ontology TO:0000973 spikelet rachilla shape An inflorescence branch morphology trait (TO:0000784) which is the shape of a spikelet rachilla (PO:0009080). TO:Ethan_Johnson An inflorescence branch morphology trait (TO:0000784) which is the pubescence of a spikelet rachilla (PO:0009080). johnseth 2015-10-19T14:47:51Z rachilla hair type (broad) PATO:0000454 TO_GIT:106 plant_trait_ontology TO:0000974 spikelet rachilla hair type An inflorescence branch morphology trait (TO:0000784) which is the pubescence of a spikelet rachilla (PO:0009080). TO:Ethan_Johnson A caryopsis fruit morphology trait (TO:0001079) which is the width of a grain (PO:0009001). meiera 2015-10-20T15:15:19Z caryopsis width (exact) kernel width (exact) plant_trait_ontology TO:0000975 grain width A caryopsis fruit morphology trait (TO:0001079) which is the width of a grain (PO:0009001). TO:austin_meier TO:cooperl An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597). johnseth 2015-10-22T09:35:32Z TO_GIT:132 TO_GIT:144 plant_trait_ontology TO:0000976 ear infructescence morphology trait An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597). TO:Ethan_Johnson A leaf area trait (TO:0000540) that is the size of the total surface area of a leaf (PO:0025034). johnseth 2015-10-23T10:29:59Z TO_GIT:139 plant_trait_ontology TO:0000977 Comment: rating scale of 3, small; 5, intermediate; 7 large leaf foliage rating A leaf area trait (TO:0000540) that is the size of the total surface area of a leaf (PO:0025034). TO:Ethan_Johnson A glume morphology trait (TO:0000869) with is the shape of a glume (PO:0009039). johnseth 2015-10-23T10:46:05Z TO_GIT:166 plant_trait_ontology TO:0000978 glume shape A glume morphology trait (TO:0000869) with is the shape of a glume (PO:0009039). TO:Ethan_Johnson A collective phyllome structure morphology trait (TO:0000845) that is a quality of an involucre (PO:0009100). johnseth 2015-11-02T15:02:56Z TO_GIT:153 plant_trait_ontology TO:0000979 involucre morphology trait A collective phyllome structure morphology trait (TO:0000845) that is a quality of an involucre (PO:0009100). TO:Ethan_Johnson A plant embryo cotyledon morphology trait (TO:0000775) which is the color of the plant embryo cotyledon (PO:0025470). TO_austin_meier GIT_TO:353 plant embryo cotyledon colour (exact) plant_trait_ontology TO:0000980 plant embryo cotyledon color A plant embryo cotyledon morphology trait (TO:0000775) which is the color of the plant embryo cotyledon (PO:0025470). PATO:0000014 A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025). Ethan_Johnson TO_GIT:359 plant_trait_ontology TO:0000985 root system morphology trait A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025). ethan_johnson PO:0025025 A flower number trait (TO:0002736) which is the number of staminate flowers (PO:0025600). ethan_johnson PATO:0001555 TO_GIT:356 male flower number trait (exact) plant_trait_ontology TO:0000986 staminate flower number trait A flower number trait (TO:0002736) which is the number of pistillate flowers (PO:0025599). ethan_johnson PATO:0001555 TO_GIT:356 female flower number trait (exact) plant_trait_ontology TO:0000987 pistillate flower number trait A shoot system morphology trait (TO:0000077) that is a quality of a shoot-borne shoot system (PO:0004545). ethan_johnson TO_GIT:332 plant_trait_ontology TO:0000988 shoot-borne shoot system morphology trait A shoot-borne shoot system morphology trait (TO:0000988) that is a quality of an epicormic shoot system (PO:0004546). ethan_johnson TO_GIT:332 plant_trait_ontology TO:0000989 epicormic shoot system morphology trait A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010). ethan_johnson PATO:0000048 plant_trait_ontology TO:0000990 seed hardness A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010). TO:cooperl An epicormic shoot system morphology trait (TO:0000989) which is the number of epicormic shoot systems (PO:0004546). ethan_johnson TO_GIT:332 stem sucker number (exact) plant_trait_ontology TO:0000991 epicormic shoot system number A biological process trait (TO:0000283) which is a quality of a gibberellin biosynthetic process (GO:0009686). ethan_johnson gibberellin biosynthesis (broad) TO_GIT:383 plant_trait_ontology TO:0000992 Refers to gibberellin (CHEBI:24250) gibberellin biosynthesis trait A carbohydrate content trait (TO:0000291) which is the amount of cellulose (CHEBI:62968) in a plant structure (PO:0009011). ethan_johnson TO_GIT:384 plant_trait_ontology TO:0000993 Refers to crystalline cellulose (CHEBI:62968): A (1→4)-β-D-glucan (cellulose) in crystalline form with a structure consisting of several hundred to over ten thousand D-glucose residues joined by β(1→4) glycosidic linkages. cellulose content A carbohydrate content trait (TO:0000291) which is the amount of cellulose (CHEBI:62968) in a plant structure (PO:0009011). TO:cooperl A collective phyllome structure morphology trait (TO:0000845) that is a quality of the androecium (PO:0009061). ethan_johnson TO_GIT:386 plant_trait_ontology TO:0000994 androecium morphology trait A collective phyllome structure morphology trait (TO:0000845) that is a quality of the androecium (PO:0009061). PO:0009061 TO:cooperl A mineral and ion content trait (TO:0000465) which is the aluminium cation (CHEBI:63062) composition in a plant structure (PO:0009011). TO_GIT:412 Al content (exact) aluminium content (exact) plant_trait_ontology TO:0000995 aluminum content trait A mineral and ion content trait (TO:0000465) which is the aluminium cation (CHEBI:63062) composition in a plant structure (PO:0009011). TO:cooperl A flag leaf anatomy and morphology trait (TO:0000832) which is the area of a flag leaf (PO:0020103). 2017-07-10T10:36:57Z TO_GIT:415 plant_trait_ontology TO:0000996 flag leaf area A flag leaf anatomy and morphology trait (TO:0000832) which is the area of a flag leaf (PO:0020103). PMID:25785447 PMID:26841834 TO:cooperl A grain length (TO:0000734) measured on a dehulled, polished grain. 2017-07-10T10:36:57Z TO_GIT:415 white rice grain length (narrow) plant_trait_ontology TO:0000997 polished grain length A grain length (TO:0000734) measured on a dehulled, polished grain. PMID:26842267 TO:cooperl A grain width (TO:0000975) which is the width of the dehulled, polished grain. 2017-07-10T10:36:57Z TO_GIT:415 white rice grain width (narrow) plant_trait_ontology TO:0000998 polished grain width A grain width (TO:0000975) which is the width of the dehulled, polished grain. PMID:26842267 TO:cooperl A grain length to width ratio (TO:0002731) measured on a dehulled, polished grain. 2017-07-10T10:36:57Z TO_GIT:415 white rice grain length to width ratio (narrow) plant_trait_ontology TO:0000999 polished grain length to width ratio A grain length to width ratio (TO:0002731) measured on a dehulled, polished grain. TO:cooperl A glume morphology trait (TO:0000869) which is amount the glume (PO:0009039) covers the caryopsis. Often measured as percentage. plant_trait_ontology TO:0001000 glume cover A glume morphology trait (TO:0000869) which is amount the glume (PO:0009039) covers the caryopsis. Often measured as percentage. Gramene:pankaj_jaiswal PO:0009039 TO:moorel A glume morphology trait (TO:0000869) which is the persistence of a glume (PO:0009039). PATO:0000082 plant_trait_ontology TO:0001001 Measured as percentage of kernels or seeds carrying the glume after threshing. In a normal setup the seeds do not have glumes after the threshing process. Refer to persistence (PATO:0000082): A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm. glume persistence A glume morphology trait (TO:0000869) which is the persistence of a glume (PO:0009039). Gramene:pankaj_jaiswal PO:0009039 TO:moorel An inflorescence morphology trait (TO:0000373) which is the exsertion of an inflorescence (PO:0009049). TO_GIT:97 plant_trait_ontology TO:0001002 inflorescence exsertion An inflorescence morphology trait (TO:0000373) which is the exsertion of an inflorescence (PO:0009049). PO:0009049 TO:moorel A visual estimate of the plant height for a group of plants in an experiment. plant_trait_ontology TO:0001003 plant height uniformity A visual estimate of the plant height for a group of plants in an experiment. Gramene:pankaj_jaiswal Number of basal tillers per plant, should represent most plants within a study. plant_trait_ontology basal axillary shoot number (related) TO:0001004 basal tiller number Number of basal tillers per plant, should represent most plants within a study. Gramene:pankaj_jaiswal The height of the tallest basal tiller (basal axillary shoot) of a plant. plant_trait_ontology basal tiller height (related) TO:0001005 basal tiller length The height of the tallest basal tiller (basal axillary shoot) of a plant. Gramene:pankaj_jaiswal A root number (TO:0000084) trait which is the number of adventitious roots (shoot-borne root; PO:0000042). plant_trait_ontology TO:0001006 Adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are part of the root system (PO:0025025). adventitious root number A root number (TO:0000084) trait which is the number of adventitious roots (shoot-borne root; PO:0000042). Gramene:pankaj_jaiswal TO:cooperl A coleoptile morphology trait (TO:0000753) which is the length of a coleoptile (PO:0020033). PATO:0000122 TO_GIT:62 plant_trait_ontology TO:0001007 coleoptile length A coleoptile morphology trait (TO:0000753) which is the length of a coleoptile (PO:0020033). Gramene:pankaj_jaiswal PO:0020033 TO:cooperl In grass plants the number of days required for the full emergence of the flag leaf in a field or study. It can be counted from date of seed sowing or the transplant (in case of rice). plant_trait_ontology TO:0001008 days to flag leaf emergence In grass plants the number of days required for the full emergence of the flag leaf in a field or study. It can be counted from date of seed sowing or the transplant (in case of rice). Gramene:pankaj_jaiswal A count of number of roots present below a given depth from the soil surface. plant_trait_ontology TO:0001009 deep root number A count of number of roots present below a given depth from the soil surface. Gramene:pankaj_jaiswal Number of leaves in a plant that have undergone leaf senescence stage or are considered dead. dead leaf number (narrow) plant_trait_ontology TO:0001010 senesced leaf number Number of leaves in a plant that have undergone leaf senescence stage or are considered dead. Gramene:pankaj_jaiswal A ration of the deep root dry weight to total root dry weight per plant. deep root dry weight to total root dry weight ratio (exact) plant_trait_ontology TO:0001011 deep root weight ratio A ration of the deep root dry weight to total root dry weight per plant. Gramene:pankaj_jaiswal A root length (TO:0000227) that is the length of one or more lateral roots (PO:0020121). GIT_TO:365 PATO:0000122 plant_trait_ontology TO:0001012 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. lateral root length A root length (TO:0000227) that is the length of one or more lateral roots (PO:0020121). Gramene:pankaj_jaiswal TO:austin_meier TO:seymour_megan Average sum of number of lateral roots in a plant derived per experiment. plant_trait_ontology TO:0001013 lateral root number Average sum of number of lateral roots in a plant derived per experiment. Gramene:pankaj_jaiswal A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034). plant_trait_ontology TO:0001014 leaf dry weight A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034). Gramene:pankaj_jaiswal PO:0025034 TO:moorel The total amount of carbon fixed by the plant per unit time and is measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure. plant_trait_ontology gross photosynthetic rate (related) leaf photosynthetic rate (related) TO:0001015 photosynthetic rate The total amount of carbon fixed by the plant per unit time and is measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure. Gramene:pankaj_jaiswal A chlorophyll content trait (TO:0000495) which is the relative chlorophyll content of a plant structure (PO:0009011) after a treatment, as compared to that determined under normal growth conditions. plant_trait_ontology TO:0001016 relative chlorophyll content A chlorophyll content trait (TO:0000495) which is the relative chlorophyll content of a plant structure (PO:0009011) after a treatment, as compared to that determined under normal growth conditions. Gramene:pankaj_jaiswal TO:cooperl As determined by the ratio of photosynthetic rate to transpiration rate. photosynthetic rate to transpiration rate ratio (exact) plant_trait_ontology TO:0001017 water use efficiency As determined by the ratio of photosynthetic rate to transpiration rate. Gramene:pankaj_jaiswal The rate of transpiration. GO:0010148 plant_trait_ontology TO:0001018 transpiration rate The rate of transpiration. Gramene:pankaj_jaiswal A ratio of root dry weight to total plant dry weight. plant_trait_ontology root dry weight to total plant dry weight ratio (related) TO:0001019 root to total biomass ratio A ratio of root dry weight to total plant dry weight. Gramene:pankaj_jaiswal Volume of the sap exudate collected from the cut parts of a plant. plant_trait_ontology Sap per tiller (related) TO:0001020 exudate sap volume Volume of the sap exudate collected from the cut parts of a plant. Gramene:pankaj_jaiswal Number of days required for the emergence of inflorescence to become visible on the plant. plant_trait_ontology days to inflorescence emergence (related) TO:0001021 Often in grasses it emerges from the flag leaf whcih is the top most leaft on the shoot. days to inflorescence exsertion Number of days required for the emergence of inflorescence to become visible on the plant. Gramene:pankaj_jaiswal Number of days required for the tassel to emerge from the flag leaf in a maize plant or a group of plants in a study. plant_trait_ontology TO:0001022 Often determined when the 50% length of the tassel has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds. days to tassel emergence Number of days required for the tassel to emerge from the flag leaf in a maize plant or a group of plants in a study. Gramene:pankaj_jaiswal Number of days required for the ear shoot to emerge from the given leaf sheath in a maize plant or a group of plants in a study. plant_trait_ontology TO:0001023 Often determined when the 50% length of the ear has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds. days to ear shoot emergence Number of days required for the ear shoot to emerge from the given leaf sheath in a maize plant or a group of plants in a study. Gramene:pankaj_jaiswal A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011). jaiswalp plant_trait_ontology PHOCN (related) TO:0001024 phosphorus content A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl Amount of phosphorus in the leaf. plant_trait_ontology LFPHOCN (related) TO:0001025 Often measured in per unit dry weight. leaf phosphorus content Amount of phosphorus in the leaf. Gramene:pankaj_jaiswal The total amount of carbon lost metabolically by the plant per unit time and is measured by determining the increase in CO2 concentration over a plant leaf in a glass enclosure. plant_trait_ontology TO:0001026 respiration rate The total amount of carbon lost metabolically by the plant per unit time and is measured by determining the increase in CO2 concentration over a plant leaf in a glass enclosure. Gramene:pankaj_jaiswal It is measured as the difference between gross photosynthesis (the total amount of carbon fixed by the plant per unit time) and the respiration (the total amount of carbon lost metabolically during that same time). plant_trait_ontology TO:0001027 net photosynthetic rate It is measured as the difference between gross photosynthesis (the total amount of carbon fixed by the plant per unit time) and the respiration (the total amount of carbon lost metabolically during that same time). Gramene:pankaj_jaiswal Break point of leaf water potential in the regression of leaf water potential against leaf relative water content. plant_trait_ontology Break point of osmotic adjustment (related) TO:0001028 osmotic adjustment break point Break point of leaf water potential in the regression of leaf water potential against leaf relative water content. CIRAD:Brigitte_Courtois It is a ratio of harvest index in stress to that of control environment. plant_trait_ontology TO:0001029 relative harvest index It is a ratio of harvest index in stress to that of control environment. Gramene:pankaj_jaiswal It is a ratio of leaf area determined from a stressed plant to that grown in normal environment. plant_trait_ontology TO:0001030 relative leaf area It is a ratio of leaf area determined from a stressed plant to that grown in normal environment. Gramene:pankaj_jaiswal It is a ratio of leaf dry weight determined from a stressed plant to that grown in normal environment. plant_trait_ontology TO:0001031 relative leaf dry weight It is a ratio of leaf dry weight determined from a stressed plant to that grown in normal environment. Gramene:pankaj_jaiswal A panicle number (TO:0000152) trait which is the ratio of panicle number determined from a stressed plant to that grown in normal environment. plant_trait_ontology TO:0001032 relative panicle number A panicle number (TO:0000152) trait which is the ratio of panicle number determined from a stressed plant to that grown in normal environment. Gramene:pankaj_jaiswal TO:moorel It is a ratio of spikelet number per panicle/inflorescence determined from a stressed plant to that grown in normal environment. plant_trait_ontology relative number of spikelet per panicle (related) TO:0001033 relative spikelet number It is a ratio of spikelet number per panicle/inflorescence determined from a stressed plant to that grown in normal environment. Gramene:pankaj_jaiswal It is a ratio of the plant height determined from a stressed plant to that grown in normal environment. plant_trait_ontology TO:0001034 relative plant height It is a ratio of the plant height determined from a stressed plant to that grown in normal environment. Gramene:pankaj_jaiswal A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047). PATO:0000921 plant_trait_ontology culm diameter (related) culm width (related) TO:0001035 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. stem width A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047). Gramene:cwt PO:0009047 TO:moorel OBSOLETE. plant_trait_ontology culm senescence (related) TO:0001036 Please refer to stem senescence (TO:0020085)." [Gramene:cwt, TO:moorel] stem senescence true A yield trait (TO:0000371) which is the yield of roots (PO:0009005). cooperl plant_trait_ontology TO:0001041 root yield A yield trait (TO:0000371) which is the yield of roots (PO:0009005). TO:cooperl A plant quality trait (TO:0000597) which is the quality of roots (PO:0009005). cooperl plant_trait_ontology TO:0001042 root quality trait A plant quality trait (TO:0000597) which is the quality of roots (PO:0009005). TO:cooperl A mineral and ion content trait (TO:0000465) which is the barium cation (CHEBI:39125) composition in a plant structure (PO:0009011). TO_GIT:412 Ba content (exact) plant_trait_ontology TO:0001043 barium content trait A mineral and ion content trait (TO:0000465) which is the barium cation (CHEBI:39125) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the cobalt cation (CHEBI:23336) composition in a plant structure (PO:0009011). TO_GIT:412 Co content (exact) plant_trait_ontology TO:0001044 cobalt content trait A mineral and ion content trait (TO:0000465) which is the cobalt cation (CHEBI:23336) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the chromium cation (CHEBI:33516) composition in a plant structure (PO:0009011). TO_GIT:412 Cr content (exact) plant_trait_ontology TO:0001045 chromium content trait A mineral and ion content trait (TO:0000465) which is the chromium cation (CHEBI:33516) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the iodine cation (CHEBI:33116) composition in a plant structure (PO:0009011). TO_GIT:412 I content (exact) plant_trait_ontology TO:0001046 iodine content trait A mineral and ion content trait (TO:0000465) which is the iodine cation (CHEBI:33116) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the lead cation (CHEBI:30180) composition in a plant structure (PO:0009011). TO_GIT:412 I content (exact) plant_trait_ontology TO:0001047 lead content trait A mineral and ion content trait (TO:0000465) which is the lead cation (CHEBI:30180) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the silicon cation (CHEBI:30584) composition in a plant structure (PO:0009011). TO_GIT:412 Si content (exact) plant_trait_ontology TO:0001048 silicon content trait A mineral and ion content trait (TO:0000465) which is the silicon cation (CHEBI:30584) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the rubidium cation (CHEBI:49847) composition in a plant structure (PO:0009011). TO_GIT:412 Rb content (exact) plant_trait_ontology TO:0001049 rubidium content trait A mineral and ion content trait (TO:0000465) which is the rubidium cation (CHEBI:49847) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a plant structure (PO:0009011). TO_GIT:412 Sr content (exact) plant_trait_ontology TO:0001050 strontium content trait A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a plant structure (PO:0009011). TO:cooperl A root morphology trait (TO:0000043) which is the number of root hairs (GO:0035618) in a given surface area of a root (PO:0009005). 2017-07-14T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001051 root hair density A root morphology trait (TO:0000043) which is the number of root hairs (GO:0035618) in a given surface area of a root (PO:0009005). PMID:27294384 TO:cooperl A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root cortex (PO:0000258). 2017-07-14T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001052 root cortex cross-sectional area A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root cortex (PO:0000258). PMID:27294384 TO:cooperl A subterranean shoot axis tuber morphology trait (TO:0000742) which is the length of a subterranean shoot axis tuber (PO:0004547). 2017-11-29T10:36:57Z TO_GIT:56 plant_trait_ontology TO:0001053 Refers to length (PATO:0000122). subterranean shoot axis tuber length A subterranean shoot axis tuber morphology trait (TO:0000742) which is the length of a subterranean shoot axis tuber (PO:0004547). TO:cooperl A cardinal organ part morphology trait (TO:0000754) which is the cross-sectional area of the root stele (PO:0020124). 2017-07-14T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001054 root stele cross-sectional area A cardinal organ part morphology trait (TO:0000754) which is the cross-sectional area of the root stele (PO:0020124). PMID:27294384 TO:cooperl A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root aerenchyma (PO:0006213). 2017-07-14T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001055 root aerenchyma cross-sectional area A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root aerenchyma (PO:0006213). PMID:27294384 TO:cooperl A root morphology trait (TO:0000043) which is the cross sectional area of a root (PO:0009005). 2017-07-14T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001056 root cross sectional area A root morphology trait (TO:0000043) which is the cross sectional area of a root (PO:0009005). PMID:21454799 TO:cooperl A root system morphology trait (TO:0000985) which is the width of the root system (PO:0025025). 2017-07-10T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001057 root system width A root system morphology trait (TO:0000985) which is the width of the root system (PO:0025025). PMID:21454799 TO:cooperl A root system morphology trait (TO:0000985) which is the depth of the root system (PO:0025025). 2017-07-14T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001058 root system depth A root system morphology trait (TO:0000985) which is the depth of the root system (PO:0025025). PMID:21454799 TO:cooperl A root system morphology trait (TO:0000985) which is the ratio of the root system width (TO:0001057) to root system depth (TO:0001058). 2017-07-14T10:36:57Z TO_GIT:417 plant_trait_ontology TO:0001059 root system width to depth ratio A root system morphology trait (TO:0000985) which is the ratio of the root system width (TO:0001057) to root system depth (TO:0001058). PMID:21454799 TO:cooperl A subterranean shoot axis tuber morphology trait (TO:0000742) which is the width of a subterranean shoot axis tuber (PO:0004547). 2017-11-30T00:04:18Z TO_GIT:56 plant_trait_ontology TO:0001060 Refers to width (PATO:0000921). subterranean shoot axis tuber width A subterranean shoot axis tuber morphology trait (TO:0000742) which is the width of a subterranean shoot axis tuber (PO:0004547). TO:cooperl An inflorescence axis morphology trait (TO:0000782) which is the thickness of an inflorescence axis (PO:0020122). 2018-01-30T23:50:51Z TO_GIT:419 rachis thickness (exact) plant_trait_ontology TO:0001061 inflorescence axis thickness An inflorescence axis morphology trait (TO:0000782) which is the thickness of an inflorescence axis (PO:0020122). PMID:26841834 TO:cooperl A panicle inflorescence morphology trait (TO:0000847) which is the number of inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123). 2018-01-31T00:33:37Z TO_GIT:419 plant_trait_ontology TO:0001062 number of panicle internodes A panicle inflorescence morphology trait (TO:0000847) which is the number of inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123). PMID:26841834 TO:cooperl A panicle inflorescence morphology trait (TO:0000847) which is the length of the inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123). 2018-01-31T00:43:58Z TO_GIT:419 plant_trait_ontology TO:0001063 panicle inflorescence internode length A panicle inflorescence morphology trait (TO:0000847) which is the length of the inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123). PMID:26841834 TO:cooperl A panicle inflorescence morphology trait (TO:0000847) which is the average number of branches per inflorescence axis internode (PO:0006326) in a panicle inflorescence (PO:0030123). 2018-01-31T23:29:53Z TO_GIT:419 plant_trait_ontology TO:0001064 number of panicle inflorescence branches per internode A panicle inflorescence morphology trait (TO:0000847) which is the average number of branches per inflorescence axis internode (PO:0006326) in a panicle inflorescence (PO:0030123). PMID:26841834 TO:cooperl A panicle inflorescence morphology trait (TO:0000847) which is the length of a terminal primary branch in a panicle inflorescence (PO:0030123). 2018-01-31T23:36:03Z TO_GIT:419 plant_trait_ontology TO:0001065 panicle inflorescence terminal primary branch length A vascular tissue morphology trait (TO_0000470) which is the number of metaxylem vessels (PO:0025620). 2017-08-17T21:15:56Z TO_GIT:421 plant_trait_ontology TO:0001066 The number of metaxylem vessels (PO:0025620) may be counted in a cross section of a primary xylem (PO:0005849). number of metaxylem vessels A vascular tissue morphology trait (TO_0000470) which is the number of metaxylem vessels (PO:0025620). PMID:1186185 TO:Laurel_Cooper A flowering time trait (TO:0002616) which is the length of time for a plant or group of plants to reach booting stage (PO:0007014). 2018-02-01T19:15:02Z TO_GIT:420 plant_trait_ontology TO:0001067 days to booting A flowering time trait (TO:0002616) which is the length of time for a plant or group of plants to reach booting stage (PO:0007014). PMID:26841834 TO:cooperl A plant quality trait (TO:0000597) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest chemical, biological or mechanical transformation into a desired end product. Laurel_Cooper 2017-12-07T10:36:57Z TO_GIT:426 plant_trait_ontology TO:0001068 processing quality trait A plant quality trait (TO:0000597) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest chemical, biological or mechanical transformation into a desired end product. TO:cooperl A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for a food cooking process (FOODON:03450002). 2017-12-08T00:41:11Z plant_trait_ontology TO:0001069 cooking quality trait A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for a food cooking process (FOODON:03450002). FOODON:03450002 TO:cooperl A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest brewing of fermented endproducts. 2017-12-08T00:41:25Z plant_trait_ontology TO:0001070 brewing quality trait A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest brewing of fermented endproducts. TO:cooperl A shoot system yield trait (TO:0000327) which is the yield of shoot axis tubers (PO:0004543). 2017-12-20T23:14:07Z plant_trait_ontology TO:0001071 Use for tuber yields of yams (Dioscorea spp.) and potatoes (Solanum spp.). shoot axis tuber yield A shoot system yield trait (TO:0000327) which is the yield of shoot axis tubers (PO:0004543). TO:cooperl An inflorescence axis morphology trait (TO:0000782) which is the length of an inflorescence axis (PO:0020122). 2018-01-31T19:32:32Z TO_GIT:407 RACHISLENG (exact) rachis length (exact) plant_trait_ontology TO:0001072 inflorescence axis length An inflorescence axis morphology trait (TO:0000782) which is the length of an inflorescence axis (PO:0020122). PMID:26841834 TO:cooperl A fruit senescing quality trait (TO:0002729) that is the tendency of a fruit (PO:0009001) to dehisce, releasing one or more seed(s) (PO:0009001). Laurel_Cooper 2018-02-23T19:49:51Z TO_GIT:430 plant_trait_ontology TO:0001073 fruit shattering A fruit senescing quality trait (TO:0002729) that is the tendency of a fruit (PO:0009001) to dehisce, releasing one or more seed(s) (PO:0009001). TO:cooperl A fruit shattering trait (TO:0001073) that is the tendency of a legume fruit (PO:0030100) to dehisce, releasing one or more seed(s) (PO:0009001). Laurel_Cooper 2018-02-23T19:50:20Z pod shattering (broad) TO_GIT:430 plant_trait_ontology TO:0001074 legume fruit shattering A fruit shattering trait (TO:0001073) that is the tendency of a legume fruit (PO:0030100) to dehisce, releasing one or more seed(s) (PO:0009001). PMID:27888713 TO:cooperl A cardinal organ part morphology trait (TO:0000754) which is the size of a pulvinus (PO:0009000). 2018-03-01T23:33:59Z TO_GIT:429 plant_trait_ontology TO:0001075 pulvinus size A cardinal organ part morphology trait (TO:0000754) which is the size of a pulvinus (PO:0009000). TO:cooperl A shoot system growth and development trait (TO:0000654) that is a quality of infructescence (PO:0006342) development. Laurel_Cooper 2018-03-27T19:37:18Z plant_trait_ontology TO:0001076 infructescence development trait A shoot system growth and development trait (TO:0000654) that is a quality of infructescence (PO:0006342) development. TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a berry fruit (PO:0030108). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001077 berry fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a berry fruit (PO:0030108). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a capsule fruit (PO:0030091). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001078 capsule fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a capsule fruit (PO:0030091). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a caryopsis fruit (PO:0030104). Laurel_Cooper 2018-09-26T19:37:18Z grain morphology trait (exact) kernel morphology trait (exact) plant_trait_ontology TO:0001079 caryopsis fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a caryopsis fruit (PO:0030104). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a drupe fruit (PO:0030103). Laurel_Cooper 2018-09-26T19:37:18Z stone fruit morphology trait (exact) plant_trait_ontology TO:0001080 drupe fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a drupe fruit (PO:0030103). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a follicle fruit (PO:0030105). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001081 follicle fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a follicle fruit (PO:0030105). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a legume fruit (PO:0030100). pod morphology trait (exact) plant_trait_ontology TO:0001082 legume fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a legume fruit (PO:0030100). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a nut fruit (PO:0030102). nut morphology trait (exact) plant_trait_ontology TO:0001083 nut fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a nut fruit (PO:0030102). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a samara fruit (PO:0030099). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001084 samara fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a samara fruit (PO:0030099). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a schizocarp fruit (PO:0030098). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001085 schizocarp fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a schizocarp fruit (PO:0030098). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a silique fruit (PO:0030106). Laurel_Cooper 2018-09-26T19:37:18Z silique morphology trait (exact) plant_trait_ontology TO:0001086 silique fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a silique fruit (PO:0030106). TO:cooperl A achene fruit morphology trait (TO:0001097) which is the weight of a achene fruit (PO:0030107). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001087 achene fruit weight A achene fruit morphology trait (TO:0001097) which is the weight of a achene fruit (PO:0030107). TO:cooperl A berry fruit morphology trait (TO:0001077) which is the weight of a berry fruit (PO:0030108). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001088 berry fruit weight A berry fruit morphology trait (TO:0001077) which is the weight of a berry fruit (PO:0030108). TO:cooperl A capsule fruit morphology trait (TO:0001078) which is the weight of a capsule fruit (PO:0030091). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001089 capsule fruit weight A capsule fruit morphology trait (TO:0001078) which is the weight of a capsule fruit (PO:0030091). TO:cooperl A drupe fruit morphology trait (TO:0001080) which is the weight of a drupe fruit (PO:0030103). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001090 drupe fruit weight A drupe fruit morphology trait (TO:0001080) which is the weight of a drupe fruit (PO:0030103). TO:cooperl A follicle fruit morphology trait (TO:0001081) which is the weight of a follicle fruit (PO:0030105). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001091 follicle fruit weight A follicle fruit morphology trait (TO:0001081) which is the weight of a follicle fruit (PO:0030105). TO:cooperl A legume fruit morphology trait (TO:0001082) which is the weight of a legume fruit (PO:0030100). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001092 legume fruit weight A legume fruit morphology trait (TO:0001082) which is the weight of a legume fruit (PO:0030100). TO:cooperl A nut fruit morphology trait (TO:0001083) which is the weight of a nut fruit (PO:0030102). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001093 nut fruit weight A nut fruit morphology trait (TO:0001083) which is the weight of a nut fruit (PO:0030102). TO:cooperl A samara fruit morphology trait (TO:0001084) which is the weight of a samara fruit (PO:0030099). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001094 samara fruit weight A samara fruit morphology trait (TO:0001084) which is the weight of a samara fruit (PO:0030099). TO:cooperl A schizocarp fruit morphology trait (TO:0001085) which is the weight of a schizocarp fruit (PO:0030098). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001095 schizocarp fruit weight A schizocarp fruit morphology trait (TO:0001085) which is the weight of a schizocarp fruit (PO:0030098). TO:cooperl A silique fruit morphology trait (TO:0001086) which is the weight of a silique fruit (PO:0030106). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001096 silique fruit weight A silique fruit morphology trait (TO:0001086) which is the weight of a silique fruit (PO:0030106). TO:cooperl A fruit morphology trait (TO:0002629) which is a quality of a achene fruit (PO:0030107). Laurel_Cooper 2018-09-26T19:37:18Z accessory fruit morphology trait (narrow) plant_trait_ontology TO:0001097 achene fruit morphology trait A fruit morphology trait (TO:0002629) which is a quality of a achene fruit (PO:0030107). TO:cooperl A berry fruit morphology trait (TO:0001077) which is a quality of a pepo fruit (PO:0030111). Laurel_Cooper 2018-09-26T19:37:18Z pepo morphology trait (exact) plant_trait_ontology TO:0001098 pepo fruit morphology trait A berry fruit morphology trait (TO:0001077) which is a quality of a pepo fruit (PO:0030111). TO:cooperl A berry fruit morphology trait (TO:0001077) which is a quality of a pome fruit (PO:0030110). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001099 pome fruit morphology trait A berry fruit morphology trait (TO:0001077) which is a quality of a pome fruit (PO:0030110). TO:cooperl A capsule fruit morphology trait (TO:0001078) which is a quality of a circumscissile capsule fruit (PO:0030096). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001100 circumscissile capsule fruit morphology trait A capsule fruit morphology trait (TO:0001078) which is a quality of a circumscissile capsule fruit (PO:0030096). TO:cooperl A circumscissile capsule morphology trait (TO:0001100) which is a quality of a utricle capsule fruit (PO:0030097). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001101 utricle capsule fruit morphology trait A circumscissile capsule morphology trait (TO:0001100) which is a quality of a utricle capsule fruit (PO:0030097). TO:cooperl A capsule fruit morphology trait (TO:0001078) which is a quality of a coccarium capsule fruit (PO:0030094). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001102 coccarium capsule fruit morphology trait A capsule fruit morphology trait (TO:0001078) which is a quality of a coccarium capsule fruit (PO:0030094). TO:cooperl A capsule fruit morphology trait (TO:0001078) which is a quality of a loculicidal capsule fruit (PO:0030092). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001103 loculicidal capsule fruit morphology trait A capsule fruit morphology trait (TO:0001078) which is a quality of a loculicidal capsule fruit (PO:0030092). TO:cooperl A capsule fruit morphology trait (TO:0001078) which is a quality of a poricidal capsule fruit (PO:0030095). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001104 poricidal capsule fruit morphology trait A capsule fruit morphology trait (TO:0001078) which is a quality of a poricidal capsule fruit (PO:0030095). TO:cooperl A capsule fruit morphology trait (TO:0001078) which is a quality of a septicidal capsule fruit (PO:0030093). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001105 septicidal capsule fruit morphology trait A capsule fruit morphology trait (TO:0001078) which is a quality of a septicidal capsule fruit (PO:0030093). TO:cooperl A legume fruit morphology trait (TO:0001082) which is a quality of a loment fruit (PO:0030101). Laurel_Cooper 2018-09-26T19:37:18Z plant_trait_ontology TO:0001106 loment fruit morphology trait A legume fruit morphology trait (TO:0001082) which is a quality of a loment fruit (PO:0030101). TO:cooperl A berry fruit morphology trait (TO:0001077) which is a quality of a hesperidium fruit (PO:0030109). Laurel_Cooper 2018-09-26T19:37:18Z citrus fruit morphology trait (exact) plant_trait_ontology TO:0001107 hesperidium fruit morphology trait A berry fruit morphology trait (TO:0001077) which is a quality of a hesperidium fruit (PO:0030109). TO:cooperl A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104). GRVOL (exact) kernel volume (exact) plant_trait_ontology TO:0001108 grain volume A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104). TO:cooperl A caryopsis fruit morphology trait (TO:0001079) which is the color of a grain (caryopsis fruit; PO:0030104). 2019-02-18T19:27:51Z plant_trait_ontology kernel color (related) TO:0001109 grain color trait A caryopsis fruit morphology trait (TO:0001079) which is the color of a grain (caryopsis fruit; PO:0030104). TO:cooperl An inflorescence morphology trait (TO:0000373) which is a quality of a spike inflorescence (PO:0030117). cooperl 2019-09-19T21:16:45Z plant_trait_ontology TO:0001110 spike inflorescence morphology trait An inflorescence morphology trait (TO:0000373) which is a quality of a spike inflorescence (PO:0030117). TO:cooperl A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395). PATO:0000117 plant_trait_ontology TO:0002600 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. floral organ size A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395). Gramene:pankaj_jaiswal PO:0025395 TO:moorel A stamen morphology trait (TO:0000225) which is the size of a stamen (PO:0009029). PATO:0000117 plant_trait_ontology TO:0002601 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. stamen size A stamen morphology trait (TO:0000225) which is the size of a stamen (PO:0009029). Gramene:pankaj_jaiswal PO:0009029 TO:moorel A pistil morphology trait (TO:0000223) which is the size of a pistil. PATO:0000117 plant_trait_ontology TO:0002602 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. pistil size A pistil morphology trait (TO:0000223) which is the size of a pistil. Gramene:pankaj_jaiswal TO:moorel A petal morphology trait (TO:0000863) which is the size of a petal (PO:0009032). PATO:0000117 plant_trait_ontology TO:0002603 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. petal size A petal morphology trait (TO:0000863) which is the size of a petal (PO:0009032). Gramene:pankaj_jaiswal PO:0009032 TO:moorel A sepal morphology trait (TO:0000864) which is the size of a sepal (PO:0009031). PATO:0000117 plant_trait_ontology TO:0002604 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. sepal size A sepal morphology trait (TO:0000864) which is the size of a sepal (PO:0009031). Gramene:pankaj_jaiswal PO:0009031 TO:moorel A petal morphology trait (TO:0000863) which is the length of a petal (PO:0009032). PATO:0000122 plant_trait_ontology TO:0002605 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. petal length A petal morphology trait (TO:0000863) which is the length of a petal (PO:0009032). Gramene:pankaj_jaiswal PO:0009032 TO:moorel A petal morphology trait (TO:0000863) which is the width of a petal (PO:0009032) in a flower (PO:0009049). PATO:0000921 plant_trait_ontology TO:0002606 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. petal width A petal morphology trait (TO:0000863) which is the width of a petal (PO:0009032) in a flower (PO:0009049). Gramene:pankaj_jaiswal PO:0009032 PO:0009049 TO:moorel A sepal morphology trait (TO:0000864) which is the length of a sepal (PO:0009031). PATO:0000122 plant_trait_ontology TO:0002607 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. sepal length A sepal morphology trait (TO:0000864) which is the length of a sepal (PO:0009031). Gramene:pankaj_jaiswal PO:0009031 TO:moorel A sepal morphology trait (TO:0000864) which is the width of a sepal (PO:0009031) in a flower (PO:0009049). PATO:0000921 plant_trait_ontology TO:0002608 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. sepal width A sepal morphology trait (TO:0000864) which is the width of a sepal (PO:0009031) in a flower (PO:0009049). Gramene:pankaj_jaiswal PO:0009031 PO:0009049 TO:moorel A stamen morphology trait (TO:0000215) which is the length of a stamen (PO:0009029). PATO:0000122 plant_trait_ontology TO:0002609 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. stamen length A stamen morphology trait (TO:0000215) which is the length of a stamen (PO:0009029). Gramene:pankaj_jaiswal PO:0009029 TO:moorel A pistil morphology trait (TO:0000223) which is the length of a pistil. PATO:0000122 plant_trait_ontology TO:0002610 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. pistil length A pistil morphology trait (TO:0000223) which is the length of a pistil. Gramene:pankaj_jaiswal TO:moorel A developmental trait resulting development of increased, decreased or new organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals. plant_trait_ontology homeotic mutation (related) TO:0002611 homeotic development trait A developmental trait resulting development of increased, decreased or new organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals. Gramene:pankaj_jaiswal A developmental trait resulting development of increased, decreased or new vegetative organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of leaves into scales. plant_trait_ontology TO:0002612 vegetative homeotic development trait A developmental trait resulting development of increased, decreased or new vegetative organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of leaves into scales. Gramene:pankaj_jaiswal A developmental trait resulting development of increased, decreased or new reproductive organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals. plant_trait_ontology TO:0002613 reproductive homeotic development trait A developmental trait resulting development of increased, decreased or new reproductive organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals. Gramene:pankaj_jaiswal A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395). PATO:0000122 plant_trait_ontology TO:0002614 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. floral organ length A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395). Gramene:pankaj_jaiswal PO:0025395 TO:moorel A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395). PATO:0000921 plant_trait_ontology TO:0002615 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. floral organ width A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395). Gramene:pankaj_jaiswal PO:0025395 TO:moorel A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616). TO_GIT:267 plant_trait_ontology anthesis timing (related) time of flowering (related) TO:0002616 Often influenced by the environment that includes, day light, temperature and geographic location. flowering time trait A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616). Gramene:pankaj_jaiswal TO:cooperl A fruit morphology trait (TO:0002617) which is the color of a fruit (PO:0009001). PATO:0000014 plant_trait_ontology TO:0002617 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. fruit color A fruit morphology trait (TO:0002617) which is the color of a fruit (PO:0009001). Gramene:pankaj_jaiswal PO:0009001 TO:moorel An endocarp morphology trait (TO:0000946) which is a the color of an endocarp (PO:0009084). PATO:0000014 TO_GIT:293 plant_trait_ontology TO:0002618 endocarp color An endocarp morphology trait (TO:0000946) which is a the color of an endocarp (PO:0009084). TO:austin_meier A mesocarp morphology trait (TO:0000948) which is the color of a mesocarp (PO:0009087). PATO:0000014 TO_GIT:294 plant_trait_ontology TO:0002619 mesocarp color A mesocarp morphology trait (TO:0000948) which is the color of a mesocarp (PO:0009087). TO:austin_meier TO:cooperl An exocarp morphology trait (TO:0000906) which is the color of an exocarp (PO:0009085). PATO:0000014 TO_GIT:295 epicarp color (exact) plant_trait_ontology TO:0002620 exocarp color An exocarp morphology trait (TO:0000906) which is the color of an exocarp (PO:0009085). TO:austin_meier TO:cooperl A fruit color trait (TO:0002617) which is the color of a fruit columella (PO:0004540). PATO:0000014 plant_trait_ontology TO:0002621 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. fruit columella color A fruit color trait (TO:0002617) which is the color of a fruit columella (PO:0004540). PO:0004540 TO:moorel The traits observed for the locular tissue present around the seeds as found in Solanaceae. plant_trait_ontology TO:0002622 The values observed in tomato and pepper fruits may be defined differently. locular tissue trait The traits observed for the locular tissue present around the seeds as found in Solanaceae. SGN:nm A pericarp morphology trait (TO:0000945) that is the texture of the pericarp (PO:0009084). PATO:0000150 TO_GIT:292 plant_trait_ontology TO:0002623 pericarp texture A pericarp morphology trait (TO:0000945) that is the texture of the pericarp (PO:0009084). TO:cooperl An exocarp morphology trait (TO:0000906) that is the texture of the exocarp (PO:0009085). PATO:0000150 TO_GIT:295 plant_trait_ontology TO:0002624 exocarp texture An exocarp morphology trait (TO:0000906) that is the texture of the exocarp (PO:0009085). TO:austin_meier TO:cooperl A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001). PATO:0000117 kernel size (narrow) pod size (narrow) plant_trait_ontology FRSZ (related) TO:0002625 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. fruit size A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001). Gramene:pankaj_jaiswal TO:moorel A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001). PATO:0000122 GRLG (narrow) grain length (narrow) pod length (narrow) plant_trait_ontology TO:0002626 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. fruit length A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001). Gramene:pankaj_jaiswal PO:0009001 TO:moorel A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001). PATO:0000921 kernel width (narrow) plant_trait_ontology FRWD (related) kernel plumpness (related) percentage of plump kernels (related) plump grain (related) TO:0002627 Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. fruit width A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001). Gramene:pankaj_jaiswal PO:0009001 TO:moorel A fruit morphology trait (TO:0002629) which is the shape of a fruit (PO:0009001). PATO:0000052 pod shape (narrow) plant_trait_ontology TO:0002628 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). fruit shape A fruit morphology trait (TO:0002629) which is the shape of a fruit (PO:0009001). Gramene:pankaj_jaiswal TO:moorel A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001). plant_trait_ontology fruit morphology (related) TO:0002629 fruit morphology trait A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001). Gramene:pankaj_jaiswal PO:0009001 TO:moorel A fruit shape (TO:0002628) which is the shape of a fruit distal end (PO:0008001). PATO:0000052 plant_trait_ontology TO:0002630 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). fruit distal end shape A fruit shape (TO:0002628) which is the shape of a fruit distal end (PO:0008001). Gramene:pankaj_jaiswal PO:0008001 TO:moorel A fruit shape (TO:0002628) which is the shape of the fruit proximal end (PO:0008002). PATO:0000052 plant_trait_ontology TO:0002631 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). fruit proximal end shape A fruit shape (TO:0002628) which is the shape of the fruit proximal end (PO:0008002). Gramene:pankaj_jaiswal PO:0008002 TO:moorel A fruit morphology trait (TO:0002632) which is the size of the fruit abscission zone (PO:0006503). PATO:0000117 plant_trait_ontology size stem scar size (related) TO:0002632 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. fruit abscission zone size A fruit morphology trait (TO:0002632) which is the size of the fruit abscission zone (PO:0006503). Gramene:pankaj_jaiswal PO:0006503 TO:moorel A fruit growth and development trait (TO:0000929) that is the extent of fruit ripening (GO:0009835). GO:0009835 TO_GIT:256 plant_trait_ontology fruit ripening (related) TO:0002633 Fruit ripening (GO:0009835) is an aging process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal. fruit ripening trait A fruit growth and development trait (TO:0000929) that is the extent of fruit ripening (GO:0009835). Gramene:pankaj_jaiswal TO:cooperl In addition to the fruit color, firmness is the best measurement of ripeness. It is assayed as the force necessary to break the flesh tissues and depends on the different growth stages during the ripening process. plant_trait_ontology TO:0002634 fruit firmness In addition to the fruit color, firmness is the best measurement of ripeness. It is assayed as the force necessary to break the flesh tissues and depends on the different growth stages during the ripening process. BR:pj A phyllome margin morphology trait (TO:0000834) which is a quality of a leaf margin (PO:0020128). jaiswalp TO_GIT:142 plant_trait_ontology leaf margin curvature (related) TO:0002635 Often associated with leaf margin curvature. leaf margin morphology trait A phyllome margin morphology trait (TO:0000834) which is a quality of a leaf margin (PO:0020128). Gramene:pankaj_jaiswal PO:0020128 An assay to detrmine the variation the number of leaves. plant_trait_ontology TO:0002636 leaflet number An assay to detrmine the variation the number of leaves. Gramene:pankaj_jaiswal A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034). PATO:0000117 plant_trait_ontology TO:0002637 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. leaf size A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034). Gramene:pankaj_jaiswal PO:0025034 TO:cooperl An assay to associate observing effects on the development of shoot meristem. plant_trait_ontology shoot meristem abortion (related) TO:0002638 shoot meristem development An assay to associate observing effects on the development of shoot meristem. Gramene:pankaj_jaiswal A shoot axis morphology trait (TO:0000739) which is the amount or pattern of branches arising from the shoot axis (PO:0025029). plant_trait_ontology TO:0002639 shoot branching A shoot axis morphology trait (TO:0000739) which is the amount or pattern of branches arising from the shoot axis (PO:0025029). TO:cooperl OBSOLETE plant_trait_ontology TO:0002640 obsoleted fruit set trait true The percentage of highly indigestible or slowly digestible fiber in a feed or forage. Acid detergent fiber contains cellulose as well as silica and lignin which are associated with low digestibility. plant_trait_ontology ACIDDETFIBR (related) ADF (related) TO:0002641 The method typically uses acidified quaternary detergent solution to dissolve cell solubles, hemicellulose and soluble minerals leaving a residue of cellulose, lignin, and heat damaged protein and a portion of cell wall protein and minerals (ash). Acid detergent fiber is determined gravimetrically as the residue remaining after extraction. The lower the acid detergent fiber, the more digestible the feed is and the higher the energy value of the feed. acid detergent fiber The percentage of highly indigestible or slowly digestible fiber in a feed or forage. Acid detergent fiber contains cellulose as well as silica and lignin which are associated with low digestibility. GrainGenes_trait:Acid_Detergent_Fiber Gramene:pankaj_jaiswal The traits assayed for content and quality of food/forage based on pre or post digestive processes. plant_trait_ontology TO:0002642 dietary fiber related trait The traits assayed for content and quality of food/forage based on pre or post digestive processes. Gramene:pankaj_jaiswal It is a measure of the C isotopic composition in plant material relative to the value of the same ratio in the air of the environment where the plant is grown. plant_trait_ontology CBISOTPDISC (related) TO:0002643 carbon isotope discrimination It is a measure of the C isotopic composition in plant material relative to the value of the same ratio in the air of the environment where the plant is grown. GrainGenes_trait:Carbon_isotope_discrimination Gramene:pankaj_jaiswal PMID:11756262 Expressed as a percent, is a measure of the dry matter content of forage or feed that is retained in the animal body. plant_trait_ontology DMATTDIGAB (related) TO:0002644 dry matter digestibility Expressed as a percent, is a measure of the dry matter content of forage or feed that is retained in the animal body. GrainGenes_trait:Dry_matter_digestibility Gramene:iyt Gramene:pankaj_jaiswal Percentage of soft malt, measured from micro malting 50g of barley. plant_trait_ontology MALTTENDER (related) TO:0002645 malt tenderness Percentage of soft malt, measured from micro malting 50g of barley. GrainGenes_trait:Malt_tenderness PMID:12677407 Size of flour particles determined after grinding the grains. The size depends on the length and type of grinding. plant_trait_ontology FLRPARTSZ (related) TO:0002646 It affects the water absorption, dough handling characteristics and loaf volume while cooking. flour particle size Size of flour particles determined after grinding the grains. The size depends on the length and type of grinding. GrainGenes_trait:Particle_size Gramene:pankaj_jaiswal Expressed as a percent, is a measure of the starch content of forage or feed that is retained in the animal body. plant_trait_ontology STARCHDIG (related) TO:0002647 starch digestibility Expressed as a percent, is a measure of the starch content of forage or feed that is retained in the animal body. GrainGenes_trait:Starch_digestibility Gramene:pankaj_jaiswal A measure of the relative water absorption after soaking a known amount (weight) of seed. plant_trait_ontology WABSORPSD (related) TO:0002648 water absorption by seed A measure of the relative water absorption after soaking a known amount (weight) of seed. GrainGenes_trait:Water_absorption Gramene:pankaj_jaiswal A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the applied pesticide. plant_trait_ontology TO:0002649 pesticide sensitivity A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the applied pesticide. TO:cooperl The directional growth of a whole plant (PO:0000003) or plant structure (PO:0009011) in response to light. coleoptile curvature (narrow) coleoptile phototropism (narrow) plant_trait_ontology TO:0002650 phototropism response trait The directional growth of a whole plant (PO:0000003) or plant structure (PO:0009011) in response to light. Gramene:pankaj_jaiswal PMID:15598797 A phototropism response trait (TO:0002650) which is the directional growth of a shoot axis (PO:0025029) in response to light. plant_trait_ontology TO:0002651 shoot axis phototropism response trait A phototropism response trait (TO:0002650) which is the directional growth of a shoot axis (PO:0025029) in response to light. Gramene:pankaj_jaiswal PMID:15598797 A phototropism response trait (TO:0002650) which which is the directional growth of a root (PO:0009005) in response to light. plant_trait_ontology TO:0002652 root phototropism response trait A phototropism response trait (TO:0002650) which which is the directional growth of a root (PO:0009005) in response to light. Gramene:pankaj_jaiswal PMID:15598797 Assay for the amount of seed storage protein present in the endosperm. plant_trait_ontology TO:0002653 endosperm storage protein content Assay for the amount of seed storage protein present in the endosperm. Gramene:pankaj_jaiswal Catalysis of the reaction: ATP + pyruvate + phosphate = AMP + phosphoenolpyruvate + diphosphate. PPDK (exact) Pyruvate phosphate dikinase (exact) Pyruvate, phosphate phosphotransferase (exact) plant_trait_ontology TO:0002654 pyruvate orthophosphate dikinase activity trait Catalysis of the reaction: ATP + pyruvate + phosphate = AMP + phosphoenolpyruvate + diphosphate. EC:2.7.9.1 GO:0050242 Gramene:pankaj_jaiswal Assay to determine the size of the starch grain size. plant_trait_ontology TO:0002655 starch grain size Assay to determine the size of the starch grain size. Gramene:pankaj_jaiswal Assay to determine the shape of the starch grain. plant_trait_ontology TO:0002656 starch grain shape Assay to determine the shape of the starch grain. Gramene:pankaj_jaiswal A chemical stress sensitivity (TO:0000482) which is the production of reactive oxygen and the plants ability to readily detoxify the reactive intermediates. plant_trait_ontology TO:0002657 oxidative stress A chemical stress sensitivity (TO:0000482) which is the production of reactive oxygen and the plants ability to readily detoxify the reactive intermediates. Gramene:pankaj_jaiswal TO:moorel An assay to determine if the starch grains are formed in the plant or plant part. Often associated with the starch biosynthesis and branching of the starch. plant_trait_ontology TO:0002658 starch grain synthesis An assay to determine if the starch grains are formed in the plant or plant part. Often associated with the starch biosynthesis and branching of the starch. Gramene:pankaj_jaiswal A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062). plant_trait_ontology TO:0002659 pistil number A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062). Gramene:pankaj_jaiswal PO:0009062 TO:moorel Measures the cytokinin content in a plant or plant part. plant_trait_ontology TO:0002660 cytokinin content Measures the cytokinin content in a plant or plant part. Gramene:pankaj_jaiswal This trait can be derived based on the parameters like, degree of grain filling, grain hardness, hull color, grain moisture, etc. It can be determined for (a)synchronously with any of these parameters. plant_trait_ontology SDMT (related) asynchronous seed maturation (related) nonsynchronous seed maturation (related) synchronous seed maturation (related) TO:0002661 seed maturation This trait can be derived based on the parameters like, degree of grain filling, grain hardness, hull color, grain moisture, etc. It can be determined for (a)synchronously with any of these parameters. Gramene:pankaj_jaiswal A leaf rolling trait (TO:0000085) which is the tolerance for leaf rolling or wilting observed in response to stresses like drought, water and temperature. It precedes leaf drying stage. Cold-induced wilting tolerance (broad) LFRLTL (exact) wilting tolerance (narrow) plant_trait_ontology TO:0002662 leaf rolling tolerance A leaf rolling trait (TO:0000085) which is the tolerance for leaf rolling or wilting observed in response to stresses like drought, water and temperature. It precedes leaf drying stage. Gramene:pankaj_jaiswal TO:moorel Tolerance for leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by less number or chlorotic and/or necrotic tissue. plant_trait_ontology Cold-induced necrosis tolerance (related) LFNECTL (related) necrosis tolerance (related) TO:0002663 leaf necrosis tolerance Tolerance for leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by less number or chlorotic and/or necrotic tissue. Gramene:pankaj_jaiswal Tolerance for leaf color yellowing observed in response to stresses like drought, water and temperature. It may precedes leaf drying stage. Cold-induced yellowing tolerance (broad) plant_trait_ontology LFYTL (related) TO:0002664 leaf yellowing tolerance Tolerance for leaf color yellowing observed in response to stresses like drought, water and temperature. It may precedes leaf drying stage. Gramene:pankaj_jaiswal A root morphology trait (TO:0000043) which is the length of a root hair (GO:0035618) present on a root (PO:0009005). plant_trait_ontology RTHLG (related) RTHRLG (related) TO:0002665 Root hair length can be calculated as the average maximum length of the root hairs present. root hair length A root morphology trait (TO:0000043) which is the length of a root hair (GO:0035618) present on a root (PO:0009005). Gramene:pankaj_jaiswal Amount of phosphorus in the seed. plant_trait_ontology SDPHOCN (related) TO:0002666 seed phosphorus content Amount of phosphorus in the seed. Gramene:pankaj_jaiswal A growth hormone content (TO:0000476) trait which is the abscisic acid (CHEBI:62431) content in a plant structure (PO:0009011). CHEBI:62431 plant_trait_ontology ABA content (related) ABACN (related) TO:0002667 abscisic acid content A growth hormone content (TO:0000476) trait which is the abscisic acid (CHEBI:62431) content in a plant structure (PO:0009011). CHEBI:62431 Measures the jasmonic acid content in a plant or plant part. plant_trait_ontology JA content (related) jasmonate content (related) TO:0002668 jasmonic acid content Measures the jasmonic acid content in a plant or plant part. Gramene:pankaj_jaiswal PMID:17031029 Measures the diterpenoid phytoalexin content in a plant or plant part. plant_trait_ontology TO:0002669 Diterpenoid phytoalexins are polycyclic diterpenes involved in pathogen response. diterpenoid phytoalexin content Measures the diterpenoid phytoalexin content in a plant or plant part. Gramene:pankaj_jaiswal Measures the momilactone A content in a plant or plant part. plant_trait_ontology phytoalexin momilactone A content (related) TO:0002670 Momilactone A is a instance of diterpenoid phytoalexin. momilactone A content Measures the momilactone A content in a plant or plant part. PMID:16569039 Measures the momilactone B content in a plant structure (PO:0009011). plant_trait_ontology phytoalexin momilactone B content (related) TO:0002671 Momilactone B is a instance of diterpenoid phytoalexin. momilactone B content Measures the momilactone B content in a plant structure (PO:0009011). PMID:16569039 TO:cooperl A growth hormone content (TO:0000476) trait which is the amount of auxin (CHEBI:22676) in a plant structure (PO:0009011). CHEBI:22676 plant_trait_ontology AUXCN (related) TO:0002672 The most important auxin produced by plants is indole-3-acetic acid (IAA). auxin content A growth hormone content (TO:0000476) trait which is the amount of auxin (CHEBI:22676) in a plant structure (PO:0009011). Gramene:pankaj_jaiswal PMID:16908506 The amino acid content in a plant or plant part. plant_trait_ontology TO:0002673 amino acid content The amino acid content in a plant or plant part. Gramene:pankaj_jaiswal Amino acid tryptophan content in a plant or plant part. plant_trait_ontology TO:0002674 tryptophan content Amino acid tryptophan content in a plant or plant part. Gramene:pankaj_jaiswal Measures the gibberellic acid content in a plant or plant part. plant_trait_ontology GA content (related) GACN (related) gibberellin content (related) TO:0002675 gibberellic acid content Measures the gibberellic acid content in a plant or plant part. Gramene:pankaj_jaiswal Measures the brassinosteroid content in a plant or plant part. plant_trait_ontology BRCN (related) TO:0002676 Brassinosteroids (BR) are a group of steroidal plant hormones. brassinosteroid content Measures the brassinosteroid content in a plant or plant part. Gramene:pankaj_jaiswal Response with respect to application of Brassinosteroid. plant_trait_ontology BRSN (related) TO:0002677 Brassinosteroids (BR) are a group of steroidal plant hormones. brassinosteroid sensitivity Response with respect to application of Brassinosteroid. Gramene:pankaj_jaiswal A panicle number (TO:0000152) trait which is the absence of panicle in the plant, either due to the abortion of the developmental process and/or due to environmental factors. plant_trait_ontology TO:0002678 panicleless A panicle number (TO:0000152) trait which is the absence of panicle in the plant, either due to the abortion of the developmental process and/or due to environmental factors. Gramene:pankaj_jaiswal TO:moorel The absence of inflorescence in the plant, either due to the abortion of the inflorescence developmental process and/or due to environmental factors. plant_trait_ontology TO:0002679 inflorescenceless The absence of inflorescence in the plant, either due to the abortion of the inflorescence developmental process and/or due to environmental factors. Gramene:pankaj_jaiswal Assay to determine the amount of albumin protein. plant_trait_ontology albumen content (related) TO:0002680 albumin content Assay to determine the amount of albumin protein. Gramene:pankaj_jaiswal An assay to measure the extent of curling of the leaf lamina. plant_trait_ontology curled leaf trait (related) frizzled leaf trait (related) TO:0002681 This is due to the changes in the leaf developmental process and is different from the leaf rolling (TO:0000085) observed due to the water deficient or dorught linke conditions. leaf curling An assay to measure the extent of curling of the leaf lamina. Gramene:pankaj_jaiswal A plant cell morphology trait (TO:0002683) which is the shape of a plant cell (PO:0009002) type. PATO:0000052 plant_trait_ontology TO:0002682 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). plant cell shape A plant cell morphology trait (TO:0002683) which is the shape of a plant cell (PO:0009002) type. Gramene:pankaj_jaiswal PO:0009002 TO:moorel A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002). TO_GIT:307 plant_trait_ontology TO:0002683 plant cell morphology trait A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002). Gramene:pankaj_jaiswal PO:0009002 TO:moorel A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type. PATO:0000117 plant_trait_ontology TO:0002684 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. plant cell size A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type. Gramene:pankaj_jaiswal PO:0009002 TO:moorel A count of number of crown roots present in the seedling. plant_trait_ontology TO:0002685 crown root number A count of number of crown roots present in the seedling. Gramene:pankaj_jaiswal Traits associated with observing effects on the growth and development of the plant cell and its parts. plant_trait_ontology TO:0002686 cell growth and development trait Traits associated with observing effects on the growth and development of the plant cell and its parts. Gramene:pankaj_jaiswal An assay to determine the variation in the length of the plant cell due to cell growth and elongation. plant_trait_ontology cell length (related) TO:0002687 cell elongation trait An assay to determine the variation in the length of the plant cell due to cell growth and elongation. Gramene:pankaj_jaiswal A leaf lamina morphology trait (TO:0000829) which is the extent of the bending that occurrs to the leaf lamina (PO:0020039) joint in degrees. plant_trait_ontology TO:0002688 It may happen due to environmental stress such as upon brassinosteroid treatment. leaf lamina joint bending A leaf lamina morphology trait (TO:0000829) which is the extent of the bending that occurrs to the leaf lamina (PO:0020039) joint in degrees. Gramene:pankaj_jaiswal PMID:14615594 PO:0020039 TO:moorel A leaf sheath morphology trait (TO:0000835) which is the length of the leaf sheath (PO:0020104). PATO:0000122 plant_trait_ontology LFSLG (related) TO:0002689 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in in centimeters. leaf sheath length A leaf sheath morphology trait (TO:0000835) which is the length of the leaf sheath (PO:0020104). Gramene:pankaj_jaiswal PO:0020104 TO:moorel A leaf lamina morphology trait (TO:0000829) which is the length of the leaf laimina (PO:0020039). PATO:0000122 leaf blade length (exact) plant_trait_ontology LFLLG (related) TO:0002690 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in centimeters. leaf lamina length A leaf lamina morphology trait (TO:0000829) which is the length of the leaf laimina (PO:0020039). Gramene:pankaj_jaiswal PO:0020039 TO:moorel A peduncle morphology trait (TO:0000776) which is the length of a peduncle (PO:0009053). PATO:0000122 TO_GIT:88 neck internode length (exact) plant_trait_ontology TO:0002691 Peduncle is the stalk of an inflorescence; that part of the inflorescence below the first flower or inflorescence branch and above the last foliage leaf/pair of foliage leaves. Refers to the length ((PATO:0000122):A 1-D extent quality which is equal to the distance between two points) of a peduncle (PO:0009053). peduncle length A peduncle morphology trait (TO:0000776) which is the length of a peduncle (PO:0009053). Gramene:pankaj_jaiswal PO:0009053 TO:cooperl neck internode length (exact) PMID:17303594 An assay to determine the variation in the root meristem development. plant_trait_ontology TO:0002692 The variation may be due to both the genotypic and/or environmental effects. root meristem development An assay to determine the variation in the root meristem development. Gramene:pankaj_jaiswal PMID:17303594 An assay to determine the variation in the gravitropism under the influence of gravity or zero gravity. plant_trait_ontology TO:0002693 gravity response trait An assay to determine the variation in the gravitropism under the influence of gravity or zero gravity. Gramene:pankaj_jaiswal An assay to determine the sensory impression of a fruit by the chemical senses of taste and smell. TO_GIT:117 pod flavor trait (narrow) plant_trait_ontology TO:0002694 fruit flavor trait An assay to determine the sensory impression of a fruit by the chemical senses of taste and smell. Gramene:pankaj_jaiswal The beta-carotene content in a plant or plant part. beta-carotenoid content (exact) plant_trait_ontology TO:0002695 The most common form of carotenoid is beta-carotene. beta-carotene content The beta-carotene content in a plant or plant part. Gramene:pankaj_jaiswal The alpha-carotene content in a plant or plant part. alpha-carotenoid content (exact) plant_trait_ontology TO:0002696 The alpha-carotene is the second most common form of carotenoid. alpha carotene content The alpha-carotene content in a plant or plant part. Gramene:pankaj_jaiswal The cyclic carotene content in a plant or plant part. plant_trait_ontology TO:0002697 cyclic carotene content The cyclic carotene content in a plant or plant part. Gramene:pankaj_jaiswal The acyclic carotene content in a plant or plant part. plant_trait_ontology TO:0002698 acyclic carotene content The acyclic carotene content in a plant or plant part. Gramene:pankaj_jaiswal The lycopene content in a plant or plant part. plant_trait_ontology TO:0002699 Lycopene is the most efficient quencher of singlet oxygen free radicals. lycopene content The lycopene content in a plant or plant part. Gramene:pankaj_jaiswal The quality of producing a sharp sensation of taste or smell. plant_trait_ontology TO:0002700 pungency The quality of producing a sharp sensation of taste or smell. Gramene:pankaj_jaiswal The leutein content in a plant or plant part. plant_trait_ontology TO:0002701 lutein content The leutein content in a plant or plant part. Gramene:pankaj_jaiswal Causal agent: Cercospora spp. plant_trait_ontology TO:0002702 cercospora leaf spot resistance Causal agent: Cercospora spp. Gramene:pankaj_jaiswal The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species. plant_trait_ontology TO:0002703 protist disease resistance The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal Causal agent: Meloidogyne incognita. Symptom: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It produces characteristic galls (swellings) on roots. plant_trait_ontology TO:0002704 Meloidogyne incognita resistance Causal agent: Meloidogyne incognita. Symptom: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It produces characteristic galls (swellings) on roots. Gramene:pankaj_jaiswal Causal agent: Pseudoperonospora cubensis. It causes the downy mildew disease in cucurbits. plant_trait_ontology TO:0002705 cucurbit downy mildew resistance Causal agent: Pseudoperonospora cubensis. It causes the downy mildew disease in cucurbits. Gramene:pankaj_jaiswal Causal agent: Meloidogyne javanica. Symptom: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It produces characteristic galls (swellings) on roots. plant_trait_ontology TO:0002706 Meloidogyne javanica resistance Causal agent: Meloidogyne javanica. Symptom: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It produces characteristic galls (swellings) on roots. Gramene:pankaj_jaiswal A petiole morphology trait (TO:0000765) which is the color of the petiole (PO:0020038). PATO:0000014 plant_trait_ontology TO:0002707 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. petiole color A petiole morphology trait (TO:0000765) which is the color of the petiole (PO:0020038). Gramene:pankaj_jaiswal PO:0020038 TO:moorel The color of the xylem tissue. plant_trait_ontology TO:0002708 xylem color The color of the xylem tissue. Gramene:pankaj_jaiswal The color of the phloem tissue. plant_trait_ontology TO:0002709 phloem color The color of the phloem tissue. Gramene:pankaj_jaiswal A root morphology trait (TO:0000043) which is the shape of a root (PO:0009005). plant_trait_ontology TO:0002710 root shape A root morphology trait (TO:0000043) which is the shape of a root (PO:0009005). Gramene:pankaj_jaiswal TO:cooperl true A whole plant growth and development trait (TO:0000947) which is the color of plant and the photosynthetic organs remain green compared to turning yellow and or brown at the time of senescing. plant_trait_ontology TO:0002712 stay green trait A whole plant growth and development trait (TO:0000947) which is the color of plant and the photosynthetic organs remain green compared to turning yellow and or brown at the time of senescing. Gramene:pankaj_jaiswal A plant cell morphology trait (TO:0002683) which is a quality of a cell organelle. organelle biogenesis trait (narrow) organelle structure trait (narrow) plant_trait_ontology cell organelle development trait (related) TO:0002713 cell organelle morphology trait A plant cell morphology trait (TO:0002683) which is a quality of a cell organelle. Gramene:pankaj_jaiswal TO:moorel A plant structure growth and development trait (TO:0000928) which is a quality of plastid development. plastid biogenesis trait (narrow) plastid structure trait (narrow) plant_trait_ontology TO:0002714 plastid development trait A plant structure growth and development trait (TO:0000928) which is a quality of plastid development. Gramene:pankaj_jaiswal TO:cooperl Trait(s) associated with phenotypes observed for abnormal development of chloroplast structure and biogenesis. chloroplast biogenesis trait (narrow) chloroplast structure trait (narrow) plant_trait_ontology TO:0002715 chloroplast development trait Trait(s) associated with phenotypes observed for abnormal development of chloroplast structure and biogenesis. Gramene:pankaj_jaiswal A leaf sheath morphology trait (TO: 0002717) which is the extent of pubescence (presence of hairs) on the leaf sheath auricle (PO:0020106). plant_trait_ontology AUPUBES (related) TO:0002716 leaf sheath auricle pubescence A leaf sheath morphology trait (TO: 0002717) which is the extent of pubescence (presence of hairs) on the leaf sheath auricle (PO:0020106). Gramene:pankaj_jaiswal PO:0020106 A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath auricle (PO:0020106). TO_GIT:143 plant_trait_ontology TO:0002717 leaf sheath auricle morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath auricle (PO:0020106). Gramene:pankaj_jaiswal PO:0020106 TO:cooperl A cardinal organ part morphology trait (TO:0000754) which is a quality of an awn (PO:0025349). plant_trait_ontology TO:0002718 awn morphology trait A cardinal organ part morphology trait (TO:0000754) which is a quality of an awn (PO:0025349). Gramene:pankaj_jaiswal PO:0025349 TO:moorel An awn morphology trait (TO:0002718) which is the thickness of the awn (PO:0025349) measured at a given distance from the apiculus. PATO:0000915 plant_trait_ontology AWNTH (related) TO:0002719 Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. awn thickness An awn morphology trait (TO:0002718) which is the thickness of the awn (PO:0025349) measured at a given distance from the apiculus. Gramene:pankaj_jaiswal PO:0025349 TO:moorel A leaf lamina morphology trait (TO:0000829) which is the width of the leaf lamina (PO:0020039). PATO:0000921 LFLWD (exact) plant_trait_ontology leaf blade width (related) TO:0002720 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. in centimeters leaf lamina width A leaf lamina morphology trait (TO:0000829) which is the width of the leaf lamina (PO:0020039). Gramene:pankaj_jaiswal PO:0020039 TO:moorel A leaf sheath morphology trait (TO:0000835) which is the width of the leaf sheath (PO:0020104). PATO:0000921 plant_trait_ontology TO:0002721 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. leaf sheath width A leaf sheath morphology trait (TO:0000835) which is the width of the leaf sheath (PO:0020104). Gramene:pankaj_jaiswal PO:0020104 TO:cooperl TO:moorel A leaf morphology trait (TO:0000748) which is the extent of pubescence (presence of hairs) on the leaf (PO:0025034). jaiswalp PATO:0001320 plant_trait_ontology TO:0002722 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. leaf pubescence A leaf morphology trait (TO:0000748) which is the extent of pubescence (presence of hairs) on the leaf (PO:0025034). Gramene:pankaj_jaiswal PO:0025034 A leaf lamina margin morphology trait (TO:0000830) which is the extent of pubescence (presence of hairs) on a leaf lamina margin (PO:0025009). PATO:0001320 plant_trait_ontology LFLMPUBES (related) leaf blade margin pubescence (related) TO:0002723 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. leaf lamina margin pubescence A leaf lamina margin morphology trait (TO:0000830) which is the extent of pubescence (presence of hairs) on a leaf lamina margin (PO:0025009). Gramene:pankaj_jaiswal A leaf sheath morphology trait (TO:0000835) which is the color of the leaf sheath (PO:0020104). PATO:0000014 plant_trait_ontology LFSCL (related) TO:0002724 Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. leaf sheath color A leaf sheath morphology trait (TO:0000835) which is the color of the leaf sheath (PO:0020104). Gramene:pankaj_jaiswal PO:0020104 TO:moorel Determined for type of life cycle being annual, biannual, perennial etc. plant_trait_ontology LIFECYCHAB (related) TO:0002725 life cycle habit Determined for type of life cycle being annual, biannual, perennial etc. Gramene:pankaj_jaiswal A lemma morphology trait (TO:1000023) which is the shape of a sterile lemma (PO:0009040). TO_GIT:390 plant_trait_ontology STLEMSHP (related) TO:0002726 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). sterile lemma shape A lemma morphology trait (TO:1000023) which is the shape of a sterile lemma (PO:0009040). Gramene:pankaj_jaiswal PATO:0000052 PO:0009040 TO:cooperl TO:moorel A lemma morphology trait (TO:0000079) which is the width of a sterile lemma (PO:0009040). TO_GIT:390 plant_trait_ontology STLEMWD (related) TO:0002727 Measured in the widest portion of the sterile lemma. Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. sterile lemma width true true A lemma morphology trait (TO:0000079) which is the width of a sterile lemma (PO:0009040). Gramene:pankaj_jaiswal PATO:0000921 PO:0009040 TO:cooperl A plant quality trait (TO:0000597) which is the commercial and /or economical value of a fruit (PO:0009001) , or its overall improvement. TO_GIT:263 plant_trait_ontology TO:0002728 fruit quality trait A plant quality trait (TO:0000597) which is the commercial and /or economical value of a fruit (PO:0009001) , or its overall improvement. Gramene:pankaj_jaiswal TO:cooperl Traits associated with the fruit abscission zone. plant_trait_ontology TO:0002729 fruit senescing quality trait Traits associated with the fruit abscission zone. Gramene:pankaj_jaiswal A caryopsis fruit morphology trait (TO:0001079) which is the shape of a grain (caryopsis fruit; PO:0030104). PATO:0000052 plant_trait_ontology DHULGRSHP (related) GRSHP (related) dehulled grain shape (related) TO:0002730 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). grain shape A caryopsis fruit morphology trait (TO:0001079) which is the shape of a grain (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal TO:moorel TO:cooperl A grain size (TO:0000397) which is the grain length and grain width on dehulled grain. PATO:0000117 PATO:0000122 PATO:0000921 plant_trait_ontology DHULGRLGWDRO (related) GRLHWDRO (related) dehulled-grain length to width ratio (related) TO:0002731 grain length to width ratio A grain size (TO:0000397) which is the grain length and grain width on dehulled grain. Gramene:pankaj_jaiswal TO:moorel In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed around anthesis stage. plant_trait_ontology FLFAGERLY (related) flag leaf attitude: early stage (related) TO:0002732 flag leaf angle: early stage In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed around anthesis stage. Gramene:pankaj_jaiswal In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed at maturity stage. plant_trait_ontology FLFAGLATE (related) flag leaf attitude: late stage (related) TO:0002733 flag leaf angle: late stage In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed at maturity stage. Gramene:pankaj_jaiswal An awn morphology trait (TO:0002718) which is the presence or absence of an awn (PO:0025349). Observation may include relative awn size. PATO:0000458 plant_trait_ontology AWNPLU (related) TO:0002734 Refer to presence value PATO:0000458. awn presence An awn morphology trait (TO:0002718) which is the presence or absence of an awn (PO:0025349). Observation may include relative awn size. Gramene:pankaj_jaiswal PO:0025349 TO:moorel Malformed inflorescence (panicle in rice), by staying upright/straight at the time of maturity and may carry infertile seeds. plant_trait_ontology TO:0002735 For rice: Straighthead is a physiological disorder that causes the entire head to be blank and remain upright at maturity in rice. Straighthead generally occurs in spots scattered throughout a field and is most easily recognized near harvest when normal plants have downturned heads (from the weight of the grain in the panicle). The disease is frequently found on sandy loam soils but seldom on clay soils. Old cotton fields with arsenic residues can have a severe incidence of straighthead. Other, as yet unknown, soil factors are also involved in causing straighthead. Often it is found in fields where excessive non-decayed vegetation has been plowed under just before planting. The disease is characterized by upright heads when the rice matures due to infertile seed. Hulls may be distorted into a crescent shape or "parrot beak". One or both hulls may be missing. Affected plants continue to grow, are a darker green, and often produce shoots from a lower portion of the plant. First year crops of rice grown on "new ground" are more likely to be affected. Some varieties are more tolerant than others. Control measures include planting resistant varieties and draining fields with a history of the disorder just prior to internode elongation. straighthead Malformed inflorescence (panicle in rice), by staying upright/straight at the time of maturity and may carry infertile seeds. Gramene:pankaj_jaiswal http://plantpathology.tamu.edu/Texlab/Grains/Rice/rices.html An inflorescence morphology trait (TO:0000582 ) which is the number of flowers (PO:0009046). PATO:0001555 plant_trait_ontology TO:0002736 flower number trait An inflorescence morphology trait (TO:0000582 ) which is the number of flowers (PO:0009046). Gramene:pankaj_jaiswal PO:0009046 TO:moorel Average number of flowers (florets) per branch in a grass inflorescence. plant_trait_ontology FLNBPBR (related) TO:0002737 floret number per branch Average number of flowers (florets) per branch in a grass inflorescence. Gramene:pankaj_jaiswal Average number of flowers (florets) in a grass inflorescence. florets per panicle (exact) plant_trait_ontology FLNBPINFLO (related) FLNBPPN (related) floret number per panicle (related) florets per inflorescence (related) TO:0002738 floret number per inflorescence Average number of flowers (florets) in a grass inflorescence. Gramene:pankaj_jaiswal Average whole fruit surface area. plant_trait_ontology FRUTSURFAR (related) TO:0002739 fruit surface area Average whole fruit surface area. Gramene:pankaj_jaiswal true The average surface area of the grain without hull (dehulled) in a grass fruit caryopsis. TO:0002740 plant_trait_ontology DHULGRSURFAR (related) GRSURFAR (related) dehulled-grain surface area (related) hulled-grain surface area (related) kernel surface area (related) TO:0002741 grain surface area The average surface area of the grain without hull (dehulled) in a grass fruit caryopsis. Gramene:pankaj_jaiswal A fruit morphology trait (TO:0002629) which is the volume of the fruit (PO:0002629). PATO:0000918 plant_trait_ontology TO:0002742 Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. fruit volume A fruit morphology trait (TO:0002629) which is the volume of the fruit (PO:0002629). Gramene:pankaj_jaiswal PO:0002629 A grain volume (TO:0001108) which is the volume of a dehulled grain. PATO:0000918 DHULGRVOL (exact) plant_trait_ontology TO:0002743 Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. dehulled grain volume A grain volume (TO:0001108) which is the volume of a dehulled grain. Gramene:pankaj_jaiswal TO:moorel A fruit length (TO:0002626) which is the average length of the curved surface of fruit (PO:0009001). PATO:0000122 plant_trait_ontology TO:0002744 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. fruit curved length A fruit length (TO:0002626) which is the average length of the curved surface of fruit (PO:0009001). Gramene:pankaj_jaiswal PO:0009001 TO:moorel A grain length (TO:0000734) which is the curved surface of grain without hull (dehulled). PATO:0000122 curved length of dehulled-grain (exact) dehulled-grain curved length (exact) plant_trait_ontology DHULGRCURVLG (related) TO:0002745 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. grain curved length A grain length (TO:0000734) which is the curved surface of grain without hull (dehulled). Gramene:pankaj_jaiswal TO:moorel A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001). TO_GIT:242 plant_trait_ontology TO:0002746 Fruit weight is the weight of one or more fruits at a specified level of maturity and, for grain, moisture level. In maize it is often reported as 100 or 1000 kernel weight, in grams and at 15% moisture content. fruit weight A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001). Gramene:pankaj_jaiswal TO:cooperl A dehulled grain weight (TO:0000590) which is the weight of a sample of 10 dehulled grains (caryopsis fruit; PO:0030104). 10 grain weight (broad) TENGRWT (broad) TENDHULGRWT (exact) ten dehulled grain weight (exact) plant_trait_ontology ten grain weight (broad) TO:0002747 10-dehulled grain weight A dehulled grain weight (TO:0000590) which is the weight of a sample of 10 dehulled grains (caryopsis fruit; PO:0030104). Gramene:pankaj_jaiswal TO:cooperl A vascular leaf morphology trait (TO:0000419) which is a quality of a ligule (PO:0020105). plant_trait_ontology TO:0002748 ligule morphology trait A vascular leaf morphology trait (TO:0000419) which is a quality of a ligule (PO:0020105). Gramene:pankaj_jaiswal PO:0020105 TO:cooperl A ligule morphology trait (TO:0002748) which is the extent of pubescence (presence of hairs) on the ligule (PO:0020105). PATO:0001320 plant_trait_ontology LIGPUBES (related) TO:0002749 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. ligule pubescence A ligule morphology trait (TO:0002748) which is the extent of pubescence (presence of hairs) on the ligule (PO:0020105). Gramene:pankaj_jaiswal PO:0020105 TO:cooperl A ligule morphology trait (TO:0002748) which isthe extent of pubescence (presence of hairs) on the margin of a ligule (PO:0020105). PATO:0001320 ligule margin hairiness (exact) plant_trait_ontology LIGMPUBES (related) TO:0002750 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. ligule margin pubescence A ligule morphology trait (TO:0002748) which isthe extent of pubescence (presence of hairs) on the margin of a ligule (PO:0020105). Gramene:pankaj_jaiswal PO:0020105 TO:cooperl An inflorescence morphology trait (TO:0000373) which is the arrangement of inflorescence branches (PO:0009081). TO:0002752 plant_trait_ontology INFLBRARANGE (related) panicle branch arrangement (related) TO:0002751 inflorescence branch arrangement An inflorescence morphology trait (TO:0000373) which is the arrangement of inflorescence branches (PO:0009081). Gramene:pankaj_jaiswal PO:0009081 TO:moorel true An inflorescence branch arrangement (TO:0002751) trait which is the arrangement of primary branches in an inflorescence (PO:0009049). plant_trait_ontology PBRARANGE (related) arrangement of primary branch (related) primary branch arrangement (related) TO:0002753 arrangement of inflorescence primary branch An inflorescence branch arrangement (TO:0002751) trait which is the arrangement of primary branches in an inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel An inflorescence axis morphology trait (TO:0000782) which is the texture of an inflorescence axis (PO:0020122). PATO:0000150 panicle axis texture (exact) plant_trait_ontology INFLOAXISTEX (related) PNAXISTEX (related) TO:0002754 Refers to the texture (PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics) of an inflorescence axis (PO:0020122). inflorescence axis texture An inflorescence axis morphology trait (TO:0000782) which is the texture of an inflorescence axis (PO:0020122). Gramene:pankaj_jaiswal PO:0020122 TO:cooperl Trait(s) associated with phenotypes observed for abnormal development of cell organelle structure and its biogenesis. plant_trait_ontology TO:0002755 cell organelle development trait Trait(s) associated with phenotypes observed for abnormal development of cell organelle structure and its biogenesis. Gramene:pankaj_jaiswal Estimated by the angle of inclination of the main shoot/stem against the soil/growth medium surface. plant_trait_ontology CULMHAB (related) STEMHAB (related) culm habit (related) growth habit (related) stem habit (related) TO:0002756 shoot growth angle Estimated by the angle of inclination of the main shoot/stem against the soil/growth medium surface. Gramene:pankaj_jaiswal A flag leaf morphology trait (TO:0000832) which is the length of the flag leaf (PO:0020103). PATO:0000122 FLFLG (exact) plant_trait_ontology TO:0002757 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. flag leaf length A flag leaf morphology trait (TO:0000832) which is the length of the flag leaf (PO:0020103). Gramene:pankaj_jaiswal PO:0020103 TO:moorel Actual measurements, in centimeters of the widest portion of the flag leaf lamina. FLFLWD (exact) flag leaf blade width (exact) plant_trait_ontology TO:0002758 flag leaf lamina width Actual measurements, in centimeters of the widest portion of the flag leaf lamina. Gramene:pankaj_jaiswal A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342). PATO:0001555 plant_trait_ontology GRNB (related) kernel number (related) TO:0002759 Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. grain number A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342). Gramene:pankaj_jaiswal PO:0006342 PO:0030104 TO:moorel TO:cooperl true A grain length (TO:0000734) with hull. plant_trait_ontology HULGRLG (related) hulled grain length (related) hulled-grain length (related) TO:0002761 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. length of grain with hull A grain length (TO:0000734) with hull. Gramene:pankaj_jaiswal A grain width (TO:0000975) with caryopsis hull (PO:0006000). PATO:0000921 width of grain with hull (exact) plant_trait_ontology HULGRWD (related) hulled grain curved width (related) hulled grain width (related) TO:0002762 Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. hulled grain width A grain width (TO:0000975) with caryopsis hull (PO:0006000). Gramene:pankaj_jaiswal TO:moorel Average length of the curved surface of grain with hull (hulled). PATO:0000122 plant_trait_ontology HULGRCURVLG (related) hulled grain curved length (related) TO:0002763 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. curved length of grain with hull Average length of the curved surface of grain with hull (hulled). Gramene:pankaj_jaiswal The average surface area of the grain with hull (hulled) in a grass fruit caryopsis. plant_trait_ontology HULGRSURFAR (related) hulled-grain surface area (related) TO:0002764 surface area of grain with hull The average surface area of the grain with hull (hulled) in a grass fruit caryopsis. Gramene:pankaj_jaiswal A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000). HULGRVOL (exact) plant_trait_ontology hulled caryopsis volume (related) TO:0002765 hulled grain volume A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000). Gramene:pankaj_jaiswal A ligule morphology trait (TO:0002748) which is a shape of a margin of a ligule (PO:0020105). PATO:0000052 plant_trait_ontology LIGMSHP (related) TO:0002766 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). ligule margin shape A ligule morphology trait (TO:0002748) which is a shape of a margin of a ligule (PO:0020105). Gramene:pankaj_jaiswal PO:0020105 TO:cooperl plant_trait_ontology RHZFORM (related) TO:0002767 rhizome formation A spikelet morphology trait (TO:0000657) which is the length of a spikelet (PO:0009051). PATO:0000122 plant_trait_ontology SPKLG (related) TO:0002768 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. spikelet length A spikelet morphology trait (TO:0000657) which is the length of a spikelet (PO:0009051). Gramene:pankaj_jaiswal PO:0009051 TO:moorel The linoleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. CAS:60-33-3 CHEBI:17351 (9Z,12Z)-Octadecadienoic acid content (exact) (Z,Z)-9,12-octadecadienoic acid content (exact) 9-cis,12-cis-Octadecadienoic acid content (exact) 9Z,12Z-octadecadienoic acid content (exact) cis,cis-linoleic acid content (exact) linoleic oil content (exact) high linoleic oil content (narrow) low linoleic oil content (narrow) plant_trait_ontology TO:0005001 According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, in soybean oil the normal values for linoleic acid content are 48% - 59%. linoleic acid content The linoleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. Gramene:pankaj_jaiswal The oleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. CAS:112-80-1 CHEBI:16196 (9Z)-Octadecenoic acid content (exact) (9Z)-octadec-9-enoic acid content (exact) (Z)-Octadec-9-enoic acid content (exact) cis-9-octadecenoic acid content (exact) high oleic oil content (narrow) mid oleic oil content (narrow) plant_trait_ontology oleic oil content (related) TO:0005002 According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, for soybean oil the normal values for oleic acid content are 17% - 30%. oleic acid content The oleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. Gramene:pankaj_jaiswal The stearic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. CAS:57-11-4 CHEBI:28842 n-octadecanoic acid content (exact) octadecanoic acid content (exact) octadecoic acid content (exact) high stearic oil content (narrow) low stearic oil content (narrow) plant_trait_ontology stearic oil content (related) TO:0005003 According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. e.g. for soybean oil the normal values for stearic acid content are 2% - 5.4%. stearic acid content The stearic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. Gramene:pankaj_jaiswal The omega-3 fatty acid content in the essential oils present in or extracted from a plant or the plant part such as seed. CHEBI:25681 plant_trait_ontology TO:0005004 Omega-3 fatty acid (CHEBI:25681) is a polyunsaturated fatty acid (CHEBI:26208) . There are four subtypes of omega-3 fatty acids, namely, alpha-licanic acid (CHEBI:28771), all-cis-docosa-4,7,10,13,16,19-hexaenoic acid (CHEBI:28125), all-cis-icosa-5,8,11,14,17-pentaenoic acid and alpha-linolenic acid (CHEBI:27432). omega-3 fatty acid content The omega-3 fatty acid content in the essential oils present in or extracted from a plant or the plant part such as seed. Gramene:pankaj_jaiswal The alpha-linolenic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. CAS:463-40-1 CHEBI:27432 (9,12,15)-linolenic acid content (exact) (9Z,12Z,15Z)-Octadecatrienoic acid content (exact) (Z,Z,Z)-9,12,15-octadecatrienoic acid content (exact) 9,12,15-Octadecatrienoic acid content (exact) 9-cis,12-cis,15-cis-octadecatrienoic acid content (exact) all-cis-9,12,15-octadecatrienoic acid content (exact) cis,cis,cis-9,12,15-octadecatrienoic acid content (exact) plant_trait_ontology TO:0005005 According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, in soybean oil the normal values for alpha-linolenic acid content are 4.5% - 11%. alpha-linolenic acid content The alpha-linolenic acid content in the essential oils present in or extracted from a plant or the plant part such as seed. Gramene:pankaj_jaiswal An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glyphosate. glyphosate susceptibility (narrow) glyphosate tolerance (narrow) plant_trait_ontology TO:0005006 It is expected that the herbicide application must not affect the agronomic yield, if any. glyphosate sensitivity An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glyphosate. Gramene:pankaj_jaiswal An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glufosinate. glufosinate susceptibility (narrow) glufosinate tolerance (narrow) plant_trait_ontology TO:0005007 It is expected that the herbicide application must not affect the agronomic yield, if any. glufosinate sensitivity An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glufosinate. Gramene:pankaj_jaiswal An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide class of acetolactate synthase inhibitor. ALS inhibitor susceptibility (narrow) ALS inhibitor tolerance (narrow) acetolactate synthase inhibitor susceptibility (narrow) acetolactate synthase inhibitor tolerance (narrow) plant_trait_ontology TO:0005008 It is expected that the herbicide application must not affect the agronomic yield, if any. acetolactate synthase inhibitor sensitivity An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide class of acetolactate synthase inhibitor. Gramene:pankaj_jaiswal Causal agent: Ostrinia nubialis. ECB resistance (exact) plant_trait_ontology TO:0005009 European corn borer resistance Causal agent: Ostrinia nubialis. Gramene:pankaj_jaiswal Causal agent: Diabrotica spp. plant_trait_ontology TO:0005010 rootworm resistance Causal agent: Diabrotica spp. Gramene:pankaj_jaiswal Tolerance to the high salt content in the growth medium. SALTTL (exact) plant_trait_ontology TO:0006001 salt tolerance Tolerance to the high salt content in the growth medium. Gramene:pankaj_jaiswal Amino acid proline content in a plant or plant part. plant_trait_ontology TO:0006002 proline content Amino acid proline content in a plant or plant part. Gramene:pankaj_jaiswal Amount of oligosaccharides present in the plant or its parts. plant_trait_ontology TO:0006003 Oligosaccharide is a carbohydrate polymer that on hydrolysis yields a small number of monosaccharide molecules. oligosaccharide content Amount of oligosaccharides present in the plant or its parts. Gramene:pankaj_jaiswal Amount of raffinose present in the plant or plant part. plant_trait_ontology TO:0006004 raffinose content Amount of raffinose present in the plant or plant part. Gramene:pankaj_jaiswal Amount of fructose present in the plant or plant part. plant_trait_ontology TO:0006005 fructose content Amount of fructose present in the plant or plant part. Gramene:pankaj_jaiswal Amount of monosaccharide present in the plant or plant part. plant_trait_ontology TO:0006006 monosaccharide content Amount of monosaccharide present in the plant or plant part. Gramene:pankaj_jaiswal Amount of polysaccharide present in the plant or plant part. plant_trait_ontology TO:0006007 polysaccharide content Amount of polysaccharide present in the plant or plant part. Gramene:pankaj_jaiswal A carbohydrate content (TO:0000291) which is the amount of carbohydrate derivatives (CHEBI:63299) in a plant structure (PO:0009011). CHEBI:63299 plant_trait_ontology TO:0006008 carbohydrate derivative content A plant organ morphology trait (TO:0000736) which is a quality of a lodicule (PO:0009036) and its parts. TO_GIT:105 plant_trait_ontology TO:0006009 lodicule morphology trait A plant organ morphology trait (TO:0000736) which is a quality of a lodicule (PO:0009036) and its parts. Gramene:pankaj_jaiswal PO:0009036 TO:moorel A lodicule morphology trait (TO:0006009) which is the average number of lodicules (PO:0009036) per grass flower (floret) in a study. plant_trait_ontology TO:0006010 lodicule number A lodicule morphology trait (TO:0006009) which is the average number of lodicules (PO:0009036) per grass flower (floret) in a study. Gramene:pankaj_jaiswal PO:0009036 TO:moorel A lodicule morphology trait (TO:0006009) which is the shape of a lodicule (PO:0009036). PATO:0000052 plant_trait_ontology TO:0006011 Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). lodicule shape A lodicule morphology trait (TO:0006009) which is the shape of a lodicule (PO:0009036). Gramene:pankaj_jaiswal PO:0009036 TO:moorel A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030). plant_trait_ontology TO:0006012 carpel morphology trait A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030). Gramene:pankaj_jaiswal PO:0009030 TO:moorel A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062). plant_trait_ontology TO:0006013 carpel number A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062). Gramene:pankaj_jaiswal PO:0009030 PO:0009062 TO:moorel A leaf morphology trait (TO:0000748) which is the arrangement of the leaves on the shoot of a plant. leaf arrangement (exact) plant_trait_ontology TO:0006014 phyllotaxy A leaf morphology trait (TO:0000748) which is the arrangement of the leaves on the shoot of a plant. Gramene:pankaj_jaiswal TO:cooperl Traits associated with observing effects on the development of a given tissue type. plant_trait_ontology TO:0006015 plant tissue development trait Traits associated with observing effects on the development of a given tissue type. Gramene:pankaj_jaiswal An assay to determine the variation in the meristematic tissue development. plant_trait_ontology TO:0006016 meristem tissue development trait An assay to determine the variation in the meristematic tissue development. Gramene:pankaj_jaiswal Trait to determine the variation or effect on the establishment of meristem identity or determinacy. meristem determinacy (exact) plant_trait_ontology TO:0006017 meristem identity Trait to determine the variation or effect on the establishment of meristem identity or determinacy. Gramene:pankaj_jaiswal Trait associated with observing effects on the establishment of organ identity. plant_trait_ontology TO:0006018 Identity is considered to be the aggregate of characteristics by which a structure is recognized. organ identity Trait associated with observing effects on the establishment of organ identity. Gramene:pankaj_jaiswal Trait associated with observing effects on the establishment of floral organ identity. plant_trait_ontology TO:0006019 floral organ identity Trait associated with observing effects on the establishment of floral organ identity. Gramene:pankaj_jaiswal An assay to associate observing effects on the development of shoot apical (SAM) meristem. plant_trait_ontology TO:0006020 shoot apical meristem development An assay to associate observing effects on the development of shoot apical (SAM) meristem. Gramene:pankaj_jaiswal Trait associated with the transition of vegetative growth phase to the reproductive growth phase. plant_trait_ontology TO:0006021 Usually observed at the time of transition of shoot apical meristem (a vegetative meristem) to the inflorescence apical meristem (a reproductive meristem). vegetative to reproductive phase transition trait Trait associated with the transition of vegetative growth phase to the reproductive growth phase. Gramene:pankaj_jaiswal Traits associated with observing effects on the development of the floral organ and its parts. plant_trait_ontology TO:0006022 floral organ development trait Traits associated with observing effects on the development of the floral organ and its parts. Gramene:pankaj_jaiswal Traits associated with observing effects on the development of the lodicule in a grass flower (floret). plant_trait_ontology TO:0006023 lodicule development trait Traits associated with observing effects on the development of the lodicule in a grass flower (floret). Gramene:pankaj_jaiswal Ectopic development of lodicule in a grass flower (floret). plant_trait_ontology TO:0006024 ectopic lodicule development Ectopic development of lodicule in a grass flower (floret). Gramene:pankaj_jaiswal Traits associated with observing effects on the development of the floral bracts. plant_trait_ontology TO:0006025 flower bract development trait Traits associated with observing effects on the development of the floral bracts. Gramene:pankaj_jaiswal A flower morphology trait (TO:0000499) which is the number of flower bracts (TO:0006026). plant_trait_ontology TO:0006026 flower bract number A flower morphology trait (TO:0000499) which is the number of flower bracts (TO:0006026). Gramene:pankaj_jaiswal An inflorescence development trait (TO:0000621) which is the quality of the development of an inflorescence bract (PO:0009054). plant_trait_ontology TO:0006027 inflorescence bract development trait An inflorescence development trait (TO:0000621) which is the quality of the development of an inflorescence bract (PO:0009054). Gramene:pankaj_jaiswal TO:cooperl Number of given type of bracts in a inflorescence. plant_trait_ontology TO:0006028 inflorescence bract number Number of given type of bracts in a inflorescence. Gramene:pankaj_jaiswal Number of glumes in an inflorescence of grass, sedge or similar plant. plant_trait_ontology TO:0006029 glume number Number of glumes in an inflorescence of grass, sedge or similar plant. Gramene:pankaj_jaiswal Trait associated to observed effect on the establishment of spikelet meristem identity or determinacy. plant_trait_ontology TO:0006030 spikelet meristem identity Trait associated to observed effect on the establishment of spikelet meristem identity or determinacy. Gramene:pankaj_jaiswal An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049). PATO:0000117 plant_trait_ontology TO:0006031 Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. inflorescence size An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel A panicle inflorescence morphology trait (TO:0000847) which is the variation in size of panicle inflorescence (PO:0030123). plant_trait_ontology TO:0006032 panicle inflorescence size A panicle inflorescence morphology trait (TO:0000847) which is the variation in size of panicle inflorescence (PO:0030123). Gramene:pankaj_jaiswal TO:moorel Number of florets in a grass spikelet. plant_trait_ontology FLNBPSPK (related) TO:0006033 floret number per spikelet Number of florets in a grass spikelet. Gramene:pankaj_jaiswal A tertiary branching of inflorescence (TO:0006035) trait which is the number of tertiary branches in an inflorescence (PO:0009049). plant_trait_ontology TO:0006034 tertiary branch number A tertiary branching of inflorescence (TO:0006035) trait which is the number of tertiary branches in an inflorescence (PO:0009049). Gramene:pankaj_jaiswal PO:0009049 TO:moorel An inflorescence branching (TO:0000050) trait which is the extent of tertiary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle). plant_trait_ontology TO:0006035 tertiary branching of inflorescence An inflorescence branching (TO:0000050) trait which is the extent of tertiary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle). Gramene:pankaj_jaiswal PO:0009049 TO:moorel Elongation of the stem. plant_trait_ontology TO:0006036 Alternative associated traits are stem length (TO:0000576) and shoot elongation rate (TO:0000368). stem elongation Elongation of the stem. Gramene:pankaj_jaiswal A carpel morphology trait (TO:0006012) which is the shape of a carpel (PO:0009030). PATO:0000052 plant_trait_ontology TO:0006037 Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). carpel shape A carpel morphology trait (TO:0006012) which is the shape of a carpel (PO:0009030). Gramene:pankaj_jaiswal PO:0009030 TO:moorel A floral organ morphology trait (TO:0000862) which is the number of floral organ (PO:0025395) types in a flower (PO:0009046). plant_trait_ontology TO:0006038 floral organ number A floral organ morphology trait (TO:0000862) which is the number of floral organ (PO:0025395) types in a flower (PO:0009046). Gramene:pankaj_jaiswal PO:0009046 TO:moorel A petal morphology trait (TO:0000863) which is the number of petals (PO:0009032) in a flower (PO:0009049). plant_trait_ontology TO:0006039 petal number A petal morphology trait (TO:0000863) which is the number of petals (PO:0009032) in a flower (PO:0009049). Gramene:pankaj_jaiswal PO:0009032 PO:0009049 TO:moorel A sepal morphology trait (TO:0000864) which is the number of the sepals (PO:0009031) in a flower (PO:0009049). plant_trait_ontology TO:0006040 sepal number A sepal morphology trait (TO:0000864) which is the number of the sepals (PO:0009031) in a flower (PO:0009049). Gramene:pankaj_jaiswal PO:0009031 PO:0009049 TO:moorel A tepal morphology trait (TO:0000865) which is the number of the tepals (PO:0009033) in a flower (PO:0009049). plant_trait_ontology TO:0006041 tepal number A tepal morphology trait (TO:0000865) which is the number of the tepals (PO:0009033) in a flower (PO:0009049). Gramene:pankaj_jaiswal PO:0009033 PO:0009049 TO:moorel A mineral and ion content trait (TO:0000465) which is the lithium cation (CHEBI:49713) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T10:36:57Z plant_trait_ontology TO:0006042 May be assayed for per gram fresh weight. lithium content A mineral and ion content trait (TO:0000465) which is the lithium cation (CHEBI:49713) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A mineral and ion content trait (TO:0000465) which is the boron cation (CHEBI:30168) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:49:08Z plant_trait_ontology TO:0006043 boron content A mineral and ion content trait (TO:0000465) which is the boron cation (CHEBI:30168) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A mineral and ion content trait (TO:0000465) which is the magnesium cation (CHEBI:18420) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:51:26Z plant_trait_ontology TO:0006044 magnesium content A mineral and ion content trait (TO:0000465) which is the magnesium cation (CHEBI:18420) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011) jaiswalp 2010-10-25T04:51:26Z CHEBI:26082 plant_trait_ontology TO:0006045 phosphorus concentration A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011) Gramene:Karthik A mineral and ion content trait (TO:0000465) which is the sulfur cation (CHEBI:29832) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T10:36:57Z plant_trait_ontology TO:0006046 sulfur content A mineral and ion content trait (TO:0000465) which is the sulfur cation (CHEBI:29832) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A mineral and ion content trait (TO:0000465) which is the calcium cation (CHEBI:39123) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:54:15Z plant_trait_ontology TO:0006047 calcium content trait A mineral and ion content trait (TO:0000465) which is the calcium cation (CHEBI:39123) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011) jaiswalp 2010-10-25T04:55:34Z CHEBI:25154 plant_trait_ontology TO:0006048 manganese concentration A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011) Gramene:Karthik An iron content (TO:0020089) which is the concentration of iron cation (CHEBI:24875) in a plant structure (PO:0009011) jaiswalp 2010-10-25T04:56:30Z CHEBI:24873 plant_trait_ontology TO:0006049 iron concentration An iron content (TO:0020089) which is the concentration of iron cation (CHEBI:24875) in a plant structure (PO:0009011) Gramene:Karthik A cobalt content trait (TO:0001044) which is the concentration of cobalt cation (CHEBI:23336) in a plant structure (PO:0009011). jaiswalp 2010-10-25T10:36:57Z plant_trait_ontology TO:0006050 cobalt concentration A cobalt content trait (TO:0001044) which is the concentration of cobalt cation (CHEBI:23336) in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A mineral and ion content trait (TO:0000465) which is the nickel cation (CHEBI:25516) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:58:31Z plant_trait_ontology TO:0006051 nickel content A mineral and ion content trait (TO:0000465) which is the nickel cation (CHEBI:25516) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:59:17Z CHEBI:23377 plant_trait_ontology TO:0006052 copper concentration A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:63056) in some plant structure (PO:0009011) jaiswalp 2010-10-25T04:59:26Z plant_trait_ontology TO:0006053 zinc concentration A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:63056) in some plant structure (PO:0009011) CHEBI:63056 Gramene:Karthik A mineral and ion content trait (TO:0000465) which is the arsenic cation (CHEBI:35829) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:59:32Z plant_trait_ontology TO:0006054 arsenic content trait A mineral and ion content trait (TO:0000465) which is the arsenic cation (CHEBI:35829) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A mineral and ion content trait (TO:0000465) which is the selenium ion (CHEBI:60250) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:59:38Z plant_trait_ontology TO:0006055 selenium content A mineral and ion content trait (TO:0000465) which is the selenium ion (CHEBI:60250) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A mineral and ion content trait (TO:0000465) which is the molybdenum cation (CHEBI:37239) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T04:59:53Z plant_trait_ontology TO:0006056 molybdenum content A mineral and ion content trait (TO:0000465) which is the molybdenum cation (CHEBI:37239) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl The total Cu2+ ion concentration measured in a given volume of a plant or a plant part or plant extract. jaiswalp 2010-10-25T05:04:14Z plant_trait_ontology TO:0006057 cuperous ion concentration The total Cu2+ ion concentration measured in a given volume of a plant or a plant part or plant extract. Gramene:pankaj_jaiswal The total Cu3+ ion concentration measured in a given volume of a plant or a plant part or plant extract. jaiswalp 2010-10-25T05:04:19Z plant_trait_ontology TO:0006058 cuperic ion concentration The total Cu3+ ion concentration measured in a given volume of a plant or a plant part or plant extract. Gramene:pankaj_jaiswal A mineral and ion content trait (TO:0000465) which is the cadmium cation (CHEBI:63063) composition in a plant structure (PO:0009011). jaiswalp 2010-10-25T10:36:57Z plant_trait_ontology TO:0006059 cadmium content trait A mineral and ion content trait (TO:0000465) which is the cadmium cation (CHEBI:63063) composition in a plant structure (PO:0009011). Gramene:Karthik TO:cooperl A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll. jaiswalp 2010-10-25T05:13:05Z TO:0020113 plant_trait_ontology TO:0006060 Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue. leaf chlorosis A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll. Gramene:Karthik TO:moorel Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl. jaiswalp 2010-10-25T05:23:52Z plant_trait_ontology TO:0006061 days to germinate Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl. Gramene:curators The average width of a plant measured across an axis such as the main stem/stalk. jaiswalp 2010-10-25T05:27:37Z plant_trait_ontology TO:0006062 plant width The average width of a plant measured across an axis such as the main stem/stalk. Gramene:pankaj_jaiswal A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128). jaiswalp 2010-10-25T05:30:17Z PATO:0001206 plant_trait_ontology TO:0006063 Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. leaf margin serrated A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128). Gramene:curators PO:0020128 TO:cooperl Leaf lamina rolled into a tube like structure. jaiswalp 2010-10-25T05:34:19Z plant_trait_ontology TO:0006064 rolled leaf Leaf lamina rolled into a tube like structure. Gramene:Karthik A seedling hypocotyl morphology trait (TO:0000769) which is the length of a seedling hypocotyl (PO:0025291). jaiswalp 2010-10-25T05:36:01Z PATO:0000122 TO_GIT:64 plant_trait_ontology TO:0006065 seedling hypocotyl length A seedling hypocotyl morphology trait (TO:0000769) which is the length of a seedling hypocotyl (PO:0025291). Gramene:Karthik PO:0025291 TO:cooperl Measurement of trichomes found in per unit area of a leaf. jaiswalp 2010-10-25T05:37:25Z plant_trait_ontology TO:0006066 leaf trichome density Measurement of trichomes found in per unit area of a leaf. Gramene:curators Resistance displayed by the plant to the aphid infestation. jaiswalp 2010-10-25T05:38:56Z plant_trait_ontology TO:0006067 Aphids are members of the insect order Homoptera, family Aphididae. aphid resistance Resistance displayed by the plant to the aphid infestation. Gramene:pankaj_jaiswal Measure of the seed's germination ability in dark. jaiswalp 2010-10-25T05:42:12Z plant_trait_ontology TO:0006068 germinability in dark Measure of the seed's germination ability in dark. Gramene:curators A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50). jaiswalp 2010-10-25T05:44:20Z plant_trait_ontology TO:0006069 DSDS50 A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50). Gramene:Karthik The percentage of seeds that germinate against the total number of seeds planted. plant_trait_ontology TO:0010001 percent germination The percentage of seeds that germinate against the total number of seeds planted. Gramene:pankaj_jaiswal Describes the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins. plant_trait_ontology LFLCLDIST (related) TO:0011001 leaf lamina color distribution Describes the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins. Gramene:pankaj_jaiswal An inflorescence primary branch morphology trait (TO:0000846) which is the attitude of a second order inflorescence axis (PO:0006321) in terms of upright and drooping characters. plant_trait_ontology INFLPBRAATT (related) TO:0011002 Associated to the trait inflorescence type (TO:0000267). inflorescence primary branch attitude An inflorescence primary branch morphology trait (TO:0000846) which is the attitude of a second order inflorescence axis (PO:0006321) in terms of upright and drooping characters. Gramene:pankaj_jaiswal PO:0006321 TO:moorel An inflorescence axis morphology trait (TO:0000782) which is the color of an inflorescence axis (PO:0020122). PATO:0000014 plant_trait_ontology INFLAXISCL (related) TO:0011003 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. inflorescence axis color An inflorescence axis morphology trait (TO:0000782) which is the color of an inflorescence axis (PO:0020122). Gramene:pankaj_jaiswal PO:0020122 TO:moorel An inflorescence branch morphology trait (TO:0000784) which is the color of the inflorescence branch (PO:0009081). PATO:0000014 plant_trait_ontology INFLBRACL (related) panicle branch color (related) TO:0011004 Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. inflorescence branch color An inflorescence branch morphology trait (TO:0000784) which is the color of the inflorescence branch (PO:0009081). Gramene:pankaj_jaiswal PO:0009081 TO:moorel Length of the leaf penultimate to the first leaf below the inflorescence. plant_trait_ontology PENLFLG (related) second leaf length (related) TO:0011005 In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf. penultimate leaf length Length of the leaf penultimate to the first leaf below the inflorescence. Gramene:pankaj_jaiswal Lamina width of the leaf penultimate to the first leaf below the inflorescence. plant_trait_ontology PENLFLWD (related) second leaf width (related) TO:0011006 In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf. penultimate leaf lamina width Lamina width of the leaf penultimate to the first leaf below the inflorescence. Gramene:pankaj_jaiswal An awn morphology trait (TO:0002718) which is the width of the awn (PO:0025349). PATO:0000921 plant_trait_ontology AWNWD (related) TO:0011007 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. awn width An awn morphology trait (TO:0002718) which is the width of the awn (PO:0025349). Gramene:pankaj_jaiswal PO:0025349 TO:moorel A floral organ length (TO:0002614) that is the length of the stigma (PO:0009073). plant_trait_ontology STIGLG (related) TO:0011008 stigma length A floral organ length (TO:0002614) that is the length of the stigma (PO:0009073). Gramene:pankaj_jaiswal A floral organ length (TO:0002614) that is the length of the style (PO:0009074). PATO:0000122 TO_GIT:113 silk length (narrow) plant_trait_ontology STYLLG (related) TO:0011009 style length A floral organ length (TO:0002614) that is the length of the style (PO:0009074). Gramene:pankaj_jaiswal Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem. plant_trait_ontology INCLPROXNDCL (related) TO:0011010 internode color in proxomity to colored node Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem. Gramene:pankaj_jaiswal Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. jaiswalp 2011-12-09T01:27:39Z plant_trait_ontology TO:0012001 LAI is used to predict photosynthetic primary production and as a reference tool for crop growth. Measured on the plant canopy only. leaf area index Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. Wikipedia:Leaf_area_index A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaf (PO:0025034). jaiswalp 2011-12-09T01:52:17Z TO_GIT:275 plant_trait_ontology TO:0012002 leaf chlorophyll content A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaf (PO:0025034). PO:0025034 TO:cooperl OBSOLETE 'TO:0000495' jaiswalp 2011-12-09T01:54:09Z plant_trait_ontology TO:0012003 chlorophyll content in an extract true jaiswalp 2011-12-09T02:09:21Z plant_trait_ontology QY (related) TO:0012004 quantum yield jaiswalp 2011-12-09T02:09:52Z plant_trait_ontology OJIP (related) TO:0012005 chlorophyll fluorescence induction kinetics jaiswalp 2011-12-09T02:12:03Z plant_trait_ontology TO:0012006 fluorescence related trait jaiswalp 2011-12-09T02:13:21Z plant_trait_ontology TO:0012007 quantum yield determined by the light curve jaiswalp 2011-12-09T02:16:09Z plant_trait_ontology TO:0012008 quantum yield at a given wavelength jaiswalp 2011-12-09T02:18:08Z plant_trait_ontology F_T (related) TO:0012009 continuous fluorescence yield Leaf Area Duration (LAD) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. Measured over time. jaiswalp 2011-12-09T02:28:13Z plant_trait_ontology LAD (related) TO:0012010 leaf area duration Leaf Area Duration (LAD) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. Measured over time. group:Crop_Ontology_Group Rate of loss of normal leaf color over time. jaiswalp 2011-12-09T02:34:15Z plant_trait_ontology TO:0012011 leaf senescence rate Rate of loss of normal leaf color over time. group:Crop_Ontology_Group Time taken to lose normal leaf color. jaiswalp 2011-12-09T02:35:49Z plant_trait_ontology TO:0012012 In grasses often measured for flag or the second leaf from top. leaf senescence duration Time taken to lose normal leaf color. group:Crop_Ontology_Group A panicle inflorescence morphology trait (TO:0000847) which is the compactness of a panicle inflorescence (PO:0030123). PATO:0000052 PATO:0001485 plant_trait_ontology TO:0020001 Refer to compact (PATO:0001485): A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). panicle inflorescence compactness A panicle inflorescence morphology trait (TO:0000847) which is the compactness of a panicle inflorescence (PO:0030123). TO:moorel A grain yield trait (TO:0000396) which is the ratio of grain weight (TO:0000919) to panicle weight (TO:0000014). TO_GIT:242 plant_trait_ontology TO:0020002 Grain weight (TO:0000919) is a general parent term, covering the weights of various types of caryopsis fruits (PO:0030104), and doesn't specify if they are hulled or dehulled. grain weight to panicle weight ratio A grain yield trait (TO:0000396) which is the ratio of grain weight (TO:0000919) to panicle weight (TO:0000014). TO:cooperl A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006). plant_trait_ontology TO:0020003 shoot system potassium content A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006). Gramene:cwt ICRIS:019 TO:cooperl https://search.proquest.com/docview/1426182399 A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a shoot system (PO:0009006). plant_trait_ontology TO:0020004 shoot system sodium content A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a shoot system (PO:0009006). Gramene:cwt ICRIS:018 TO:cooperl https://search.proquest.com/docview/1426182399 Causative agent: Chilo partellus. Infections causes the appearance of small elongated holes in young whorl leaves, tunelling of earheads results in breakage or chaffy earheads affecting grain development. plant_trait_ontology TO:0020005 sorghum stem borer resistance Causative agent: Chilo partellus. Infections causes the appearance of small elongated holes in young whorl leaves, tunelling of earheads results in breakage or chaffy earheads affecting grain development. GCP:053 Gramene:cwt6 plant_trait_ontology TO:0020006 chickpea pod borer Causative agent: Atherigona soccata. Larval feeding results in central leaf wilting and drying causing the typical deadheart symptom. plant_trait_ontology TO:0020007 sorghum shoot fly resistance Causative agent: Atherigona soccata. Larval feeding results in central leaf wilting and drying causing the typical deadheart symptom. GCP:051 Gramene:cwt6 Causative agent: Aspergillus spp and Penicillium spp. Trait is measured as extent of grain surface covered with mold. plant_trait_ontology TO:0020008 sorghum grain mold Causative agent: Aspergillus spp and Penicillium spp. Trait is measured as extent of grain surface covered with mold. Gramene:cwt ICRIS:050 Causative agent: Puccinia purpurea. Infection causes purple, red or tan flecks on both surfaces of leaves, leaving a reddish powder on fingers when passed over it. plant_trait_ontology TO:0020009 sorghum rust resistance Causative agent: Puccinia purpurea. Infection causes purple, red or tan flecks on both surfaces of leaves, leaving a reddish powder on fingers when passed over it. Gramene:cwt ICRIS:049 Causative agent:Peronospora sp. It causes abundant downy white growth on the under surfaces of infected portions of leaves during humid weather, mature infected leaves become necrotic and intervenal tissues disintegrate to give the typical shredded leaf symptom. plant_trait_ontology TO:0020010 sorghum downy mildew resistance Causative agent:Peronospora sp. It causes abundant downy white growth on the under surfaces of infected portions of leaves during humid weather, mature infected leaves become necrotic and intervenal tissues disintegrate to give the typical shredded leaf symptom. Gramene:cwt ICRIS:047 plant_trait_ontology TO:0020011 chickpea botrytis grey mold resistance plant_trait_ontology TO:0020012 chickpea fusarium wild resistance plant_trait_ontology TO:0020013 chickpea colleotrichum blight resistance plant_trait_ontology TO:0020014 chickpea ascochyta blight resistance TO_GIT:69 plant_trait_ontology TO:0020015 sorghum leaf blight resistance A seed morphology trait (TO:0000184) which is the texture of a seed (PO:0009010). TO:0000150 TO_GIT:213 plant_trait_ontology TO:0020016 Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. seed texture A seed morphology trait (TO:0000184) which is the texture of a seed (PO:0009010). PO:0009010 TO:moorel A seed coat pattern trait (TO:0000904) where the seed coat (PO:0009088) has colored spots. PATO:0000333 TO_GIT:148 plant_trait_ontology TO:0020017 Refer to spotted (PATO:0000333): A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation. seed coat spotted A seed coat pattern trait (TO:0000904) where the seed coat (PO:0009088) has colored spots. PO:0009088 TO:moorel plant_trait_ontology TO:0020018 tertiary shoot branch number plant_trait_ontology TO:0020019 secondary shoot branch number plant_trait_ontology TO:0020020 primary shoot branch number plant_trait_ontology TO:0020021 basal axillary tertiary branch number plant_trait_ontology TO:0020022 basal axillary secondary branch number plant_trait_ontology TO:0020023 basal axillary primary branch number plant_trait_ontology TO:0020024 basal axillary branch number plant_trait_ontology TO:0020025 apical axillary tertiary branch number plant_trait_ontology TO:0020026 apical axillary secondary branch number plant_trait_ontology TO:0020027 apical axillary primary branch number Gramene:cwt6 plant_trait_ontology TO:0020028 apical axillary branch number Length of pubescence (presence of hairs) on the leaf blade surface. plant_trait_ontology TO:0020029 leaf lamina pubscence length Length of pubescence (presence of hairs) on the leaf blade surface. Gramene:cwt Density of pubescence (presence of hairs) on the leaf blade surface. plant_trait_ontology TO:0020030 leaf lamina pubescence density Density of pubescence (presence of hairs) on the leaf blade surface. Gramene:cwt A leaf lamina margin pudescence (TO:0002723) trait which is the length of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009). PATO:0000122 PATO:0001320 plant_trait_ontology TO:0020031 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. leaf lamina margin pubescence length A leaf lamina margin pudescence (TO:0002723) trait which is the length of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009). Gramene:cwt PO:0025009 TO:moorel A leaf lamina margin pubescence trait (TO:0002723) which is the density of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009). PATO:0001019 PATO:0001320 plant_trait_ontology TO:0020032 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. leaf lamina margin pubescence density A leaf lamina margin pubescence trait (TO:0002723) which is the density of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009). Gramene:cwt6 PO:002009 TO:moorel A glume morphology trait (TO:0000869) which is the length of a glume (PO:0009039) measured in mm (millimeter). PATO:0000122 plant_trait_ontology TO:0020033 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. glume length A glume morphology trait (TO:0000869) which is the length of a glume (PO:0009039) measured in mm (millimeter). Gramene:cwt IWIS:1420 PO:0009039 TO:moorel A glume morphology trait (TO:0000869) with is the measurement of width of glume (PO:0009039) in mm (millimeter). PATO:0000921 plant_trait_ontology TO:0020034 Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. glume width A glume morphology trait (TO:0000869) with is the measurement of width of glume (PO:0009039) in mm (millimeter). Gramene:cwt IWIS:1421 PO:0009039 TO:moorel A glume pubescence (TO:0020036) trait which is the measurement of glume hairines density on outer side of sterile glume (PO:0009039). PATO:0001019 plant_trait_ontology TO:0020035 Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. glume pubescence density A glume pubescence (TO:0020036) trait which is the measurement of glume hairines density on outer side of sterile glume (PO:0009039). Gramene:cwt IWIS:1422 PO:0009039 TO:moorel A glume morphology trait (TO:0000869) which is the extent of pubescence (presence of hairs) on the glume (PO:0009039) surface. PATO:0001320 plant_trait_ontology TO:0020036 Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. glume pubescence A glume morphology trait (TO:0000869) which is the extent of pubescence (presence of hairs) on the glume (PO:0009039) surface. Gramene:cwt PO:0009039 TO:moorel A glume pubescence (TO:0020036) which is the measurement of length of hairs on glume (PO:0009039). PATO:0000122 plant_trait_ontology TO:0020037 Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. glume pubescence length A glume pubescence (TO:0020036) which is the measurement of length of hairs on glume (PO:0009039). Gramene:cwt IWIS:1423 PO:0009039 TO:moorel A glume morphology trait (TO:0000869) which is the presence of wax on a glume (PO:0009039). PATO:0002381 plant_trait_ontology TO:0020038 Refer to waxiness (PATO:0002381): A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism. glume waxiness A glume morphology trait (TO:0000869) which is the presence of wax on a glume (PO:0009039). Gramene:cwt IWIS:1412 PO:0009039 TO:moorel Causal agent: Rhynchosporium secalis. jaiswalp 2011-08-19T12:12:24Z scald (exact) plant_trait_ontology TO:0020051 Symptoms include, oval, water-soaked, blue-grey spots (1.0-1.5 cm long) developing into lesions with dry necrotic centers and dark brown margins. Lesions will coalesce under high infection levels and are not delimited by veins. barley leaf scald disease resistance Causal agent: Rhynchosporium secalis. T-CAP:Victoria_Blake Causal agent: Cochliobolus sativus (Bipolaris sorokiniana). jaiswalp 2011-08-19T12:19:00Z spot blotch (exact) plant_trait_ontology TO:0020052 Symptoms include, uniform chocolate brown lesions that eventually merge forming irregular necrotic patches on leaves. Lesions may be surrounded by yellow zones of varying width. barley spot blotch disease resistance Causal agent: Cochliobolus sativus (Bipolaris sorokiniana). T-CAP:Victoria_Blake Causal agent: Cochliobolus sativus (Bipolaris sorokiniana). jaiswalp 2011-08-19T12:21:53Z Helminthosporium leaf blotch (exact) plant_trait_ontology TO:0020053 Symptoms include, elongated to oval shaped dark brown lesions. Centers often lighten to dark brown or tan surrounded by an irregular dark brown ring. wheat spot blotch disease resistance Causal agent: Cochliobolus sativus (Bipolaris sorokiniana). T-CAP:Victoria_Blake Causal agent: Puccinia striiformis f. sp. hordei. jaiswalp 2011-08-19T12:25:00Z BSR (exact) yellow rust (exact) plant_trait_ontology TO:0020054 Symptoms: chlorotic flecks at the infection site initially appear, followed by yellow uredinia (spore masses) in prominent stripes along the leaf veins. Black telia (overseasoning structures) readily develop from uredinia as infected plants mature. barley stripe rust disease resistance Causal agent: Puccinia striiformis f. sp. hordei. T-CAP:Victoria_Blake Causal agent: Puccinia striiformis f. sp. tritici. jaiswalp 2011-08-19T12:27:45Z yellow rust (broad) plant_trait_ontology TO:0020055 Symptoms: pustules (spore masses) containing yellow to orange-yellow urediniospores form narrow stripes on leaves, leaf sheaths and glumes. wheat stripe rust disease resistance Causal agent: Puccinia striiformis f. sp. tritici. T-CAP:Victoria_Blake Causal agent: Puccinia hordei. jaiswalp 2011-08-19T12:29:57Z brown rust (broad) plant_trait_ontology TO:0020056 Symptoms: small round orange brown pustules producing a mass of orange-brown urediniospores on the upper leaf surfaces and leaf sheaths. barley leaf rust disease resistance Causal agent: Puccinia hordei. T-CAP:Victoria_Blake Causal agent: Puccinia recondita f. sp. tritici. jaiswalp 2011-08-19T12:31:09Z brown rust (broad) plant_trait_ontology TO:0020057 Symptoms: circular to slightly elliptical pustules containing masses of orange to orange-brown urediniospores on the leaf surfaces and leaf sheaths. wheat leaf rust disease resistance Causal agent: Puccinia recondita f. sp. tritici. T-CAP:Victoria_Blake Causal agents: Cochliobolus sativus (Bipolaris sorokiniana), Fusarium culmorum and Fusarium pseudograminearum. jaiswalp 2011-08-19T12:33:03Z crown rot (broad) plant_trait_ontology TO:0020058 Symptoms: brown lesions on the roots, especially the subcrown internode. Under severe conditions, lesions can become nearly black with brown tissue extending into the crown and leaf sheaths. Stunted plants with reduced tillering and yield. Heads can be white with fewer kernels that are small and shriveled. barley common root rot resistance Causal agents: Cochliobolus sativus (Bipolaris sorokiniana), Fusarium culmorum and Fusarium pseudograminearum. T-CAP:Victoria_Blake Causal agents: Cochliobolus sativus (Bipolaris sorokiniana). jaiswalp 2011-08-19T12:36:24Z plant_trait_ontology TO:0020059 Symptoms: browning of the root, crown and basal culm tissues. Plants may lodge. White spikes can appear. wheat common root rot resistance Causal agents: Cochliobolus sativus (Bipolaris sorokiniana). T-CAP:Victoria_Blake Causal agent: Blumeria graminis f. sp. hordei. jaiswalp 2011-08-19T12:39:36Z plant_trait_ontology TO:0020060 Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off. Plant tissue becomes chlorotic or necrotic. Spherical black cleistothecia may develop. barley powdery mildew disease resistance Causal agent: Blumeria graminis f. sp. hordei. T-CAP:Victoria_Blake Causal agent: Blumeria graminis f. sp. tritici. jaiswalp 2011-08-19T12:39:36Z plant_trait_ontology TO:0020061 Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off. Plant tissue becomes chlorotic or necrotic. Spherical black cleistothecia may develop. wheat powdery mildew disease resistance Causal agent: Blumeria graminis f. sp. tritici. T-CAP:Victoria_Blake Causal agent: Pyrenophora teres f. teres. jaiswalp 2011-08-19T12:39:36Z NFNB (exact) plant_trait_ontology TO:0020062 Symptoms: in adult plants, initial symptoms are small pinpoint to elliptical brown spots which expand to form narrow, tan to light brown lesions, often delimited by leaf veins. Within lesions, dark brown longitudinal and transverse striations appear forming a net-like pattern. In seedlings, greenish grey, water-soaked areas appear forming brown lesions with netted striations. barley net form net blotch disease resistance Causal agent: Pyrenophora teres f. teres. T-CAP:Victoria_Blake Causal agent: Pyrenophora teres f. maculata. jaiswalp 2011-08-19T12:39:36Z SFNB (exact) plant_trait_ontology TO:0020063 Symptoms: dark brown, circular to elliptical lesions surrounded by bands of chlorosis. barley spot form net blotch disease resistance Causal agent: Pyrenophora teres f. maculata. T-CAP:Victoria_Blake Causal agent: Septoria passerinii and Stagonospora avenae f. sp. triticeae (teleomorph: Phaeosphaeria avenaria f. sp. triticeae). jaiswalp 2011-08-19T12:39:36Z SSLB (exact) plant_trait_ontology TO:0020064 Symptoms: in seedlings, S. passerinii causes faint, yellowish areas that turn greenish gray then straw colored with time forming a distinct demarcation next to healthy green tissue. On adult plants S. passerinii infection produces long, rectangular lesions delimited by veins that first appear graying then turn tan or straw colored. S. avenae f. sp. triticea produces yellow brown lesions that traverse veins and are shield or lens shaped. barley septoria disease resistance Causal agent: Septoria passerinii and Stagonospora avenae f. sp. triticeae (teleomorph: Phaeosphaeria avenaria f. sp. triticeae). T-CAP:Victoria_Blake Causal agent: Septoria tritici (Mycosphaerella graminicola), Septoria nodorum (Leptosphaeria nodorum), Septoria avenae f. sp. triticeae (Leptosphaeria avenaria f. sp. triticeae). jaiswalp 2011-08-19T12:39:36Z plant_trait_ontology TO:0020065 Symptoms: Initial infection sites tend to be irregular in shape, oval to elongated chlorotic spots or lesions. As these sites expand, the centers of the lesions become pale, straw colored, and slightly necrotic, often with numerous small black dots (pycnidia). The lesions of septoria tritici blotch tend to be linear and restricted laterally, while those of septoria nodorum blotch and septoria avenae blotch are more lens shaped. All above ground plant parts can be affected. wheat septoria leaf blotch disease resistance Causal agent: Septoria tritici (Mycosphaerella graminicola), Septoria nodorum (Leptosphaeria nodorum), Septoria avenae f. sp. triticeae (Leptosphaeria avenaria f. sp. triticeae). T-CAP:Victoria_Blake Causal agent: Xanthomonas translucens pv. translucens and pv. undulosa. jaiswalp 2011-08-19T12:58:34Z plant_trait_ontology TO:0020066 Symptoms: small, light to pale green spots which later expand into linear streaks. Streaks can extend the entire length of the leaf, that will become translucent. Infected leaves will turn yellow then brown as it dies. barley leaf streak resistance Causal agent: Xanthomonas translucens pv. translucens and pv. undulosa. T-CAP:Victoria_Blake Causal agent: The Barley Yellow Dwarf Viruses, Luteovirus (Group IV (+)ssRNA). jaiswalp 2011-08-19T01:00:45Z BYDV (exact) plant_trait_ontology TO:0020067 Symptoms: uneven blotches of bright yellow discoloration on the tips and margins of older leaves, eventually progressing down toward the base, covering the entire leaf within a few weeks. Reduced internode elongation causes stunting with severe infection possibly. barley yellow dwarf virus disease resistance Causal agent: The Barley Yellow Dwarf Viruses, Luteovirus (Group IV (+)ssRNA). T-CAP:Victoria_Blake Amount of beta-glucan present in the plant part or product (e.g. malt). Beta-Glucans are polysaccharides of D-glucose linked by beta-glycosidic bonds that vary by molecular mass, solubility, viscosity and 3D configuration. jaiswalp 2011-08-19T01:03:01Z plant_trait_ontology TO:0020068 beta-glucan content Amount of beta-glucan present in the plant part or product (e.g. malt). Beta-Glucans are polysaccharides of D-glucose linked by beta-glycosidic bonds that vary by molecular mass, solubility, viscosity and 3D configuration. T-CAP:Victoria_Blake An inflorescence exsertion (TO:0001002) trait measured in distance from the base of the spike (PO:0030117) to the auricle (PO:0020106) of the flag leaf (PO:0020103). jaiswalp 2011-08-19T01:07:39Z plant_trait_ontology TO:0020069 spike exsertion An inflorescence exsertion (TO:0001002) trait measured in distance from the base of the spike (PO:0030117) to the auricle (PO:0020106) of the flag leaf (PO:0020103). T-CAP:Victoria_Blake TO:cooperl Activity of beta-glucanase ((1,3-1,4)-beta-D-glucan, 4-glucanohydrolase), (EC:3.2.1.73) in the hydrolysis of beta-glucans. jaiswalp 2011-08-19T01:10:26Z plant_trait_ontology TO:0020070 beta-glucanase activity trait Activity of beta-glucanase ((1,3-1,4)-beta-D-glucan, 4-glucanohydrolase), (EC:3.2.1.73) in the hydrolysis of beta-glucans. GO:0042972 GO:0052736 T-CAP:Victoria_Blake The ability of beta-glucanase to remain active under mashing (boiling grain in water) conditions during beer making. jaiswalp 2011-08-19T01:18:25Z plant_trait_ontology TO:0020071 Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73). beta-glucanase thermostability The ability of beta-glucanase to remain active under mashing (boiling grain in water) conditions during beer making. T-CAP:Victoria_Blake Activity of beta-glucanase in the barley wort (the boiled grain and water) during the beer making process. jaiswalp 2011-08-19T01:20:23Z residual beta-glucanase (broad) plant_trait_ontology TO:0020072 Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73). residual beta-glucanase activity trait Activity of beta-glucanase in the barley wort (the boiled grain and water) during the beer making process. T-CAP:Victoria_Blake Concentration of protein in the wort after boiling the grain with water (mashing) in the beer making process. jaiswalp 2011-08-19T01:24:05Z wort protein (broad) plant_trait_ontology TO:0020073 barley wort protein concentration Concentration of protein in the wort after boiling the grain with water (mashing) in the beer making process. T-CAP:Victoria_Blake Color of the solution derived from boiling barley grain with water during the beer making process. jaiswalp 2011-08-19T01:27:42Z plant_trait_ontology TO:0020074 barley wort color Color of the solution derived from boiling barley grain with water during the beer making process. T-CAP:Victoria_Blake Percent protein in the malt prior to mashing (boiling the grain with water to produce a wort) in the beer making process. jaiswalp 2011-08-19T01:29:00Z plant_trait_ontology TO:0020075 barley malt protein Percent protein in the malt prior to mashing (boiling the grain with water to produce a wort) in the beer making process. T-CAP:Victoria_Blake Amount of phenolics present in the plant part, whole plant or product. jaiswalp 2011-08-19T01:29:58Z plant_trait_ontology TO:0020076 In barley its evaluated in ex malt. phenolic compound content Amount of phenolics present in the plant part, whole plant or product. T-CAP:Victoria_Blake A shoot system yield trait (TO:0000327) which is a measure of the number of fertile spikes (PO:0030117) dropped before harvest. jaiswalp 2011-08-19T01:33:35Z spike drop (exact) spike inflorescence deop (exact) plant_trait_ontology TO:0020077 head drop A shoot system yield trait (TO:0000327) which is a measure of the number of fertile spikes (PO:0030117) dropped before harvest. T-CAP:Victoria_Blake TO:cooperl A xanthophyll content (TO:0000301) which is the amount of zeaxanthin (CHEBI:27547) in a plant structure (PO:0009011). jaiswalp 2011-08-19T02:49:07Z CHEBI:27547 plant_trait_ontology TO:0020078 zeaxanthin content A xanthophyll content (TO:0000301) which is the amount of beta-cryptoxanthin (CHEBI:10362) in a plant structure (PO:0009011). jaiswalp 2011-08-19T02:53:13Z CHEBI:10362 plant_trait_ontology TO:0020079 beta-cryptoxanthin content This trait determines the amount of organic matter from the stover that would eventually be digested by animals. Value derived from chemical and in vitro analysis with rumen microbial inoculum of dried and ground stover, usually using Near Infrared Reflectance Spectrophotometry (NIRS) after appropriate calibration. jaiswalp 2011-08-19T03:13:08Z stover related trait (broad) in vitro organic matter digestibility (exact) plant_trait_ontology TO:0020080 Measured as percentage. stover organic matter digestibility This trait determines the amount of organic matter from the stover that would eventually be digested by animals. Value derived from chemical and in vitro analysis with rumen microbial inoculum of dried and ground stover, usually using Near Infrared Reflectance Spectrophotometry (NIRS) after appropriate calibration. GCP:GCP_324.0000031 ICRISAT:Vincent_Vadez ILRI:Michael_Blummel stover related trait (broad) GCP:GCP_324.000003 The trait takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover. jaiswalp 2011-08-19T03:17:28Z stover related traits (broad) metabolised energy (exact) plant_trait_ontology TO:0020081 Units: Kcal/kg. metabolized energy of stover The trait takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover. GCP:GCP_324.0000036 ICRISAT:Vincent_Vadez ILRI:Michael_Blummel stover related traits (broad) GCP:GCP_324.000003 A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS). jaiswalp 2011-08-19T03:20:23Z stover related traits plant_trait_ontology TO:0020082 stover nitrogen content A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS). GCP:GCP_324.0000016 ICRISAT:Vincent_Vadez ILRI:Michael_Blummel stover related traits GCP:GCP_324.000003 A stem morphology trait (TO:0000361) which is the diameter of a stem (PO:0009047). jaiswalp 2011-08-19T03:31:47Z PATO:0001334 plant_trait_ontology culm diameter (related) TO:0020083 Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. stem diameter A stem morphology trait (TO:0000361) which is the diameter of a stem (PO:0009047). Gramene:pankaj_jaiswal PO:0009047 TO:moorel A trait to measure leaf spiralling. jaiswalp 2011-08-19T03:33:01Z plant_trait_ontology TO:0020084 spiral leaf A trait to measure leaf spiralling. Gramene:pankaj_jaiswal A shoot development trait (TO:0000654) to measure the senescence of a stem (PO:0009047). jaiswalp 2011-08-19T03:34:31Z GO:0010260 TO_GIT:99 culm senescence (exact) plant_trait_ontology TO:0020085 Refer to organ senescence (GO:0010260): The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana. stem senescence A shoot development trait (TO:0000654) to measure the senescence of a stem (PO:0009047). Gramene:pankaj_jaiswal PO:0009047 TO:moorel A trait to observe neck leaf presence. jaiswalp 2011-08-19T03:35:46Z plant_trait_ontology TO:0020086 neck leaf presence A trait to observe neck leaf presence. Gramene:pankaj_jaiswal A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part. jaiswalp 2011-08-19T03:44:21Z plant_trait_ontology TO:0020087 root cracking A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part. Gramene:pankaj_jaiswal A metabolite content trait (TO:0000281) which is the concentration of water soluble components in a plant structure (PO:0009011). jaiswalp 2011-08-19T03:47:00Z TO:0002711 TO_GIT:100 plant_trait_ontology total dissolved solids content (related) TO:0020088 This trait is usually highly correlated with total soluble sugar content (TO:0000340). Often determined in fresh tissue using a refractive index. total water soluble content A metabolite content trait (TO:0000281) which is the concentration of water soluble components in a plant structure (PO:0009011). Gramene:pankaj_jaiswal TO:cooperl A mineral and ion content trait (TO:0000465) which is the iron cation (CHEBI:24875) composition in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:02:53Z CHEBI:24873 plant_trait_ontology TO:0020089 iron content trait A mineral and ion content trait (TO:0000465) which is the amount of zinc (CHEBI:63056) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:02:53Z plant_trait_ontology TO:0020090 zinc content trait A mineral and ion content trait (TO:0000465) which is the amount of zinc (CHEBI:63056) in a plant structure (PO:0009011). CHEBI:63056 A mineral and ion content trait (TO:0000465) which is the amount of manganese (CHEBI:25154) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:02:53Z CHEBI:25154 plant_trait_ontology TO:0020091 manganese content A mineral and ion content trait (TO:0000465) which is the copper cation (CHEBI:23378) composition in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:02:53Z CHEBI:23377 Cu content (exact) plant_trait_ontology TO:0020092 copper content trait A mineral and ion content trait (TO:0000465) which is the copper cation (CHEBI:23378) composition in a plant structure (PO:0009011). TO:cooperl A mineral and ion content trait (TO:0000465) which is the amount of nitrogen (CHEBI:51143) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:02:53Z CHEBI:51143 plant_trait_ontology TO:0020093 nitrogen content A mineral and ion content trait (TO:0000465) which is the amount of nitrate (CHEBI:17632) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:02:53Z CHEBI:17632 plant_trait_ontology TO:0020094 nitrate content Trait associated with any of the stomatal opening, closure, conductance, resistance process. jaiswalp 2011-08-19T04:06:44Z plant_trait_ontology TO:0020095 stomatal process related trait Trait associated with any of the stomatal opening, closure, conductance, resistance process. TO:contributors Trait associated with directed movement of minerals and ions into, out of, within or between cells. jaiswalp 2011-08-19T04:08:23Z plant_trait_ontology TO:0020096 mineral and ion transport trait Trait associated with directed movement of minerals and ions into, out of, within or between cells. TO:contributors A trait to measure the physiological parameters involved in the process of opening of stomatal pores. jaiswalp 2011-08-19T04:09:49Z plant_trait_ontology TO:0020097 stomatal opening A trait to measure the physiological parameters involved in the process of opening of stomatal pores. Gramene:pankaj_jaiswal TO:contributors The sensitivity to the nitrate content in the growth medium. jaiswalp 2011-08-19T04:11:32Z plant_trait_ontology TO:0020098 nitrate sensitivity The sensitivity to the nitrate content in the growth medium. Gramene:pankaj_jaiswal TO:contributors Trait associated with directed movement of nitrate into, out of, within or between cells. jaiswalp 2011-08-19T04:13:47Z plant_trait_ontology TO:0020099 nitrate transport Trait associated with directed movement of nitrate into, out of, within or between cells. TO:contributors The total nitrate ion uptake measured in a plant or a plant part. jaiswalp 2011-08-19T04:13:47Z plant_trait_ontology TO:0020100 nitrate uptake The total nitrate ion uptake measured in a plant or a plant part. TO:contributors Trait associated with directed movement of starch. jaiswalp 2011-08-19T04:13:47Z plant_trait_ontology TO:0020101 starch mobilization Trait associated with directed movement of starch. TO:contributors A mineral and ion content trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:16:58Z CHEBI:26020 phosphate ion content (exact) plant_trait_ontology TO:0020102 phosphate content A mineral and ion content trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011). CHEBI:26020 A root length (TO:0000227) trait which is the length of an adventitious root (shoot-borne root; PO:0000042). jaiswalp 2011-08-19T04:18:45Z plant_trait_ontology TO:0020103 An adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are part of the root system (PO:0025025). adventitious root length A root length (TO:0000227) trait which is the length of an adventitious root (shoot-borne root; PO:0000042). TO:cooperl Absence of adventitious roots in the plant. jaiswalp 2011-08-19T04:19:49Z plant_trait_ontology TO:0020104 adventitious rootless Absence of adventitious roots in the plant. TO:contributors A trait to measure the CW type of ytoplasmic male sterility in plants. jaiswalp 2011-08-19T04:21:39Z plant_trait_ontology TO:0020105 Often measured by abnormal pollen germination. CW-cytoplasmic male sterility A trait to measure the CW type of ytoplasmic male sterility in plants. TO:contributors An auxin content (TO:0002672) which is the amount of indole-3-acetic acid (CHEBI:16411) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:24:06Z CHEBI:16411 IAA content (exact) Indole-3-acetic acid (IAA) content (exact) plant_trait_ontology TO:0020106 Indole-3-acetic acid content A plant cell morphology trait (TO:0002683) which is the length of a plant cell (PO:0009002). jaiswalp 2011-08-19T04:25:39Z PATO:0000122 plant_trait_ontology TO:0020107 Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. plant cell length A plant cell morphology trait (TO:0002683) which is the length of a plant cell (PO:0009002). Gramene:pankaj_jaiswal PO:0009002 TO:moorel The length of the root cortical cell. jaiswalp 2011-08-19T04:26:36Z plant_trait_ontology TO:0020108 root cortical cell length The length of the root cortical cell. Gramene:pankaj_jaiswal TO:cooperl Traits associated with observing effects on the development of vascular bundle. jaiswalp 2011-08-19T04:27:34Z plant_trait_ontology TO:0020109 vascular bundle development trait Traits associated with observing effects on the development of vascular bundle. TO:contributors Traits associated with observing effects on the development of the gynoecium. jaiswalp 2011-08-19T04:29:46Z plant_trait_ontology TO:0020110 gynoecium development trait Traits associated with observing effects on the development of the gynoecium. TO:contributors Traits associated with observing effects on the development of the ovary. jaiswalp 2011-08-19T04:30:47Z plant_trait_ontology TO:0020111 ovary development trait Traits associated with observing effects on the development of the ovary. TO:contributors Accumulation of phosphate level in a plant or a plant part at toxic level. jaiswalp 2011-08-19T04:31:40Z plant_trait_ontology TO:0020112 phosphorus toxicity Accumulation of phosphate level in a plant or a plant part at toxic level. TO:contributors true A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006). jaiswalp 2011-08-19T04:35:33Z plant_trait_ontology TO:0020114 shoot system phosphorus content A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006). TO:contributors https://search.proquest.com/docview/1426182399 The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules. jaiswalp 2011-08-19T04:36:34Z plant_trait_ontology TO:0020115 chlorophyll fluorescence quenching The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules. TO:contributors The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under light conditions. jaiswalp 2011-08-19T04:37:43Z plant_trait_ontology TO:0020116 photochemical quenching The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under light conditions. Gramene:pankaj_jaiswal TO:contributors The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under no light conditions. jaiswalp 2011-08-19T04:37:43Z plant_trait_ontology NPQ (related) TO:0020117 non photochemical quenching The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under no light conditions. Gramene:pankaj_jaiswal TO:contributors A xanthophyll content (TO:0000301) which is the amount of neoxanthin (CHEBI:25501) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:39:32Z CHEBI:25501 plant_trait_ontology TO:0020118 neoxanthin content A xanthophyll content (TO:0000301) which is the amount of violaxanthin (CHEBI:27295) in a plant structure (PO:0009011). jaiswalp 2011-08-19T04:40:04Z CHEBI:27295 plant_trait_ontology TO:0020119 violaxanthin content An inflorescence bract morphology trait (TO:0000819) which is the presence of spines on an involucral bract (PO:0009045). jaiswalp 2011-08-19T04:50:17Z TO_GIT:110 spines on involucral bracts (exact) plant_trait_ontology TO:0020120 involucral bract spine presence An inflorescence bract morphology trait (TO:0000819) which is the presence of spines on an involucral bract (PO:0009045). Gramene:pankaj_jaiswal TO:cooperl An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to arachnids as compared to the susceptible and/or the reference plants of the same species. jaiswalp 2011-08-19T04:55:55Z plant_trait_ontology TO:0020121 arachnid damage resistance An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to arachnids as compared to the susceptible and/or the reference plants of the same species. Gramene:pankaj_jaiswal Causal agent: Tetranychus urticae. jaiswalp 2011-08-19T04:56:56Z red spider mite resistance (exact) plant_trait_ontology TO:0020122 two-spotted spider mite resistance Causal agent: Tetranychus urticae. Gramene:pankaj_jaiswal TO:contributors A trait to measure the ethanol yield from the industrial processing of feedstock (biomass). jaiswalp 2011-08-19T05:09:40Z plant_trait_ontology TO:0020123 Often measured as volume/mass unit used by DOE-USA. It's also consistent with the common measure of fuel ethanol (volume, not mass) and common measure of biomass. Please note that ethanol yield in liters per megagram would depend on both the ethanol conversion process and the composition (not just the quantity) of the biomass. And in most cases (at least for breeding), it probably would be predicted ethanol yield instead of ethanol yield that is directly measured from a pretreatment and fermentation process. ethanol yield from biomass A trait to measure the ethanol yield from the industrial processing of feedstock (biomass). Gramene:pankaj_jaiswal TO:contributors A stem internode morphology trait (TO:0000756) where the stem internode (PO:0020142) is bent. cooperl 2015-11-24T22:16:25Z plant_trait_ontology TO:1000000 Refers to bent (PATO:0000617): a shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. stem internode bent A stem internode morphology trait (TO:0000756) where the stem internode (PO:0020142) is bent. TO:cooperl OBSOLETE. A trait which is associated with the size of a cotyledon. cjmungall 2015-11-30T17:23:54Z seed leaf size (exact) plant_trait_ontology TO:1000001 This term was obsoleted at the TermGenie Gatekeeper stage. obsolete cotyledon size true OBSOLETE. A trait which is associated with the size of a cotyledon. TO:TermGenie seed leaf size (exact) TO:TermGenie A trait which is associated with the volumetric density of a secondary xylem. cjmungall 2015-11-30T17:23:56Z wood volumetric density (exact) plant_trait_ontology TO:1000002 secondary xylem volumetric density true true true A trait which is associated with the volumetric density of a secondary xylem. TO:TermGenie wood volumetric density (exact) TO:TermGenie A trait which is associated with the color of a shoot axis node. cjmungall 2015-11-30T17:23:58Z shoot axis node colour (exact) shoot axis node relative color (exact) plant_trait_ontology TO:1000003 shoot axis node color true true true A trait which is associated with the color of a shoot axis node. TO:TermGenie shoot axis node colour (exact) TO:TermGenie shoot axis node relative color (exact) TO:TermGenie An infructescence morphology trait (TO:0000920) which is the position of an infructescence (PO:0006342). cooperl 2015-12-10T00:13:35Z plant_trait_ontology TO:1000004 infructescence position An infructescence morphology trait (TO:0000920) which is the position of an infructescence (PO:0006342). TO:cooperl A tuberous root tuber morphology trait (TO:1000007) which is the diameter of a tuberous root tuber (PO:0025476). marieangelique.laporte 2015-12-11T15:55:08Z storage root diameter (exact) plant_trait_ontology root tuber diameter (related) TO:1000006 tuberous root tuber diameter A tuberous root tuber morphology trait (TO:1000007) which is the diameter of a tuberous root tuber (PO:0025476). TO:TermGenie storage root diameter (exact) TO:TermGenie root tuber diameter (related) TO:TermGenie A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476). marieangelique.laporte 2015-12-11T16:05:03Z plant_trait_ontology TO:1000007 tuberous root tuber morphology trait A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476). TO:malaporte A branch morphology trait (TO:0000740) which is the position of a branch (PO:0025073). marieangelique.laporte 2015-12-16T09:38:12Z shoot axis branch position (exact) plant_trait_ontology TO:1000008 branch position true true true A branch morphology trait (TO:0000740) which is the position of a branch (PO:0025073). TO:TermGenie shoot axis branch position (exact) TO:TermGenie A branch morphology trait (TO:0000740) which is the angle of a branch (PO:0025073). marieangelique.laporte 2015-12-16T14:12:59Z branching angle (exact) shoot axis branch angle (exact) plant_trait_ontology TO:1000009 branch angle true A branch morphology trait (TO:0000740) which is the angle of a branch (PO:0025073). TO:TermGenie shoot axis branch angle (exact) TO:TermGenie A cardinal part of a multi-tissue plant structure morphology trait (TO:0000837) which is the color of a caruncle (PO:0020060). marieangelique.laporte 2015-12-16T14:18:40Z caruncle colour (exact) plant_trait_ontology TO:1000010 caruncle color true true true A cardinal part of a multi-tissue plant structure morphology trait (TO:0000837) which is the color of a caruncle (PO:0020060). PO:0020060 TO:TermGenie caruncle colour (exact) TO:TermGenie A fruit morphology trait (TO:0002629) which is the position of a fruit (PO:0009001). cooperl 2015-12-30T18:26:07Z fruit location (exact) fruit placement (exact) accessory fruit position (narrow) achene position (narrow) acorn position (narrow) aggregate fruit position (narrow) akene position (narrow) anthocarp position (narrow) berry position (narrow) capsule position (narrow) caryopsides position (narrow) caryopsis position (narrow) circumcissile capsule position (narrow) citrus fruit position (narrow) coenocarp position (narrow) cypsela position (narrow) diclesium position (narrow) diplotegia position (narrow) diplotegium position (narrow) drupe position (narrow) folliceta position (narrow) follicetum position (narrow) glandes position (narrow) glans position (narrow) grain position (narrow) hesperidia position (narrow) hesperidium position (narrow) hip position (narrow) kernel position (narrow) legume position (narrow) loculicidal capsule position (narrow) loment position (narrow) lomentum position (narrow) multiple fruit position (narrow) nut position (narrow) nutlet position (narrow) pepo position (narrow) pod position (narrow) pome position (narrow) poricidal capsule position (narrow) pyxides location (narrow) pyxides position (narrow) pyxis position (narrow) samara position (narrow) schizocarp location (narrow) schizocarp position (narrow) septicidal capsule position (narrow) silicle location (narrow) silicle position (narrow) silicula position (narrow) silicula relational spatial quality (narrow) siliqua position (narrow) silique position (narrow) stone fruit position (narrow) syconia position (narrow) syconium position (narrow) syncarp position (narrow) utricle location (narrow) utricle position (narrow) plant_trait_ontology TO:1000011 fruit position true true true A fruit morphology trait (TO:0002629) which is the position of a fruit (PO:0009001). TO:cooperl fruit location (exact) TO:TermGenie fruit placement (exact) TO:TermGenie accessory fruit position (narrow) TO:TermGenie achene position (narrow) TO:TermGenie acorn position (narrow) TO:TermGenie aggregate fruit position (narrow) TO:TermGenie akene position (narrow) TO:TermGenie anthocarp position (narrow) TO:TermGenie berry position (narrow) TO:TermGenie capsule position (narrow) TO:TermGenie caryopsides position (narrow) TO:TermGenie caryopsis position (narrow) TO:TermGenie circumcissile capsule position (narrow) TO:TermGenie citrus fruit position (narrow) TO:TermGenie coenocarp position (narrow) TO:TermGenie cypsela position (narrow) TO:TermGenie diclesium position (narrow) TO:TermGenie diplotegia position (narrow) TO:TermGenie diplotegium position (narrow) TO:TermGenie drupe position (narrow) TO:TermGenie folliceta position (narrow) TO:TermGenie follicetum position (narrow) TO:TermGenie glandes position (narrow) TO:TermGenie glans position (narrow) TO:TermGenie grain position (narrow) TO:TermGenie hesperidia position (narrow) TO:TermGenie hesperidium position (narrow) TO:TermGenie hip position (narrow) TO:TermGenie kernel position (narrow) TO:TermGenie legume position (narrow) TO:TermGenie loculicidal capsule position (narrow) TO:TermGenie loment position (narrow) TO:TermGenie lomentum position (narrow) TO:TermGenie multiple fruit position (narrow) TO:TermGenie nut position (narrow) TO:TermGenie nutlet position (narrow) TO:TermGenie pepo position (narrow) TO:TermGenie pod position (narrow) TO:TermGenie pome position (narrow) TO:TermGenie poricidal capsule position (narrow) TO:TermGenie pyxides location (narrow) TO:TermGenie pyxides position (narrow) TO:TermGenie pyxis position (narrow) TO:TermGenie samara position (narrow) TO:TermGenie schizocarp location (narrow) TO:TermGenie schizocarp position (narrow) TO:TermGenie septicidal capsule position (narrow) TO:TermGenie silicle location (narrow) TO:TermGenie silicle position (narrow) TO:TermGenie silicula position (narrow) TO:TermGenie silicula relational spatial quality (narrow) TO:TermGenie siliqua position (narrow) TO:TermGenie silique position (narrow) TO:TermGenie stone fruit position (narrow) TO:TermGenie syconia position (narrow) TO:TermGenie syconium position (narrow) TO:TermGenie syncarp position (narrow) TO:TermGenie utricle location (narrow) TO:TermGenie utricle position (narrow) TO:TermGenie A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003). cooperl 2015-12-30T19:41:19Z planta entera (Spanish) size (exact) bush size (narrow) frutex size (narrow) frutices size (narrow) gametophyte size (narrow) herb size (narrow) liana size (narrow) prothalli size (narrow) prothallium size (narrow) prothallus size (narrow) seedling size (narrow) shrub size (narrow) sporophyte size (narrow) suffrutex size (narrow) suffrutices size (narrow) tree size (narrow) vine size (narrow) woody clump size (narrow) plant_trait_ontology clonal colony size (related) colony size (related) TO:1000012 whole plant size true true true A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003). TO:cooperl planta entera (Spanish) size (exact) TO:TermGenie bush size (narrow) TO:TermGenie frutex size (narrow) TO:TermGenie frutices size (narrow) TO:TermGenie gametophyte size (narrow) TO:TermGenie herb size (narrow) TO:TermGenie liana size (narrow) TO:TermGenie prothalli size (narrow) TO:TermGenie prothallium size (narrow) TO:TermGenie prothallus size (narrow) TO:TermGenie seedling size (narrow) TO:TermGenie shrub size (narrow) TO:TermGenie sporophyte size (narrow) TO:TermGenie suffrutex size (narrow) TO:TermGenie suffrutices size (narrow) TO:TermGenie tree size (narrow) TO:TermGenie vine size (narrow) TO:TermGenie woody clump size (narrow) TO:TermGenie clonal colony size (related) TO:TermGenie colony size (related) TO:TermGenie A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina lobe (PO:0025517). marieangelique.laporte 2016-01-05T10:49:33Z leaf lobe morphology trait (exact) plant_trait_ontology TO:1000013 leaf lamina lobe morphology trait true true A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina lobe (PO:0025517). TO:TermGenie A leaf lamina lobe morphology trait (TO:1000013) which is the length of a leaf lamina lobe (PO:0025517). marieangelique.laporte 2016-01-05T11:01:12Z leaf lobe length (exact) plant_trait_ontology TO:1000014 leaf lamina lobe length true A leaf lamina lobe morphology trait (TO:1000013) which is the length of a leaf lamina lobe (PO:0025517). TO:TermGenie A leaf lamina lobe morphology trait (TO:1000013) which is the width of a leaf lamina lobe (PO:0025517). marieangelique.laporte 2016-01-05T11:04:25Z plant_trait_ontology leaf lobe width (related) TO:1000015 leaf lamina lobe width true A leaf lamina lobe morphology trait (TO:1000013) which is the width of a leaf lamina lobe (PO:0025517). TO:TermGenie A plant ovary morphology (TO:10000021) which is the color of a plant ovary (PO:0009072). marieangelique.laporte 2016-01-05T10:36:57Z plant ovary colour (exact) plant ovary relative color (narrow) plant_trait_ontology TO:1000016 plant ovary color A plant ovary morphology (TO:10000021) which is the color of a plant ovary (PO:0009072). TO:TermGenie A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem cortex (PO:0025612). marieangelique.laporte 2016-01-05T14:08:59Z stem cortex colour (exact) stem cortex relative color (exact) plant_trait_ontology TO:1000017 stem cortex color true true true A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem cortex (PO:0025612). TO:TermGenie stem cortex colour (exact) TO:TermGenie stem cortex relative color (exact) TO:TermGenie A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem epidermis (PO:0025178). marieangelique.laporte 2016-01-05T14:11:24Z stem epidermis colour (exact) stem epidermis relative color (exact) plant_trait_ontology TO:1000018 stem epidermis color true true true A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem epidermis (PO:0025178). TO:TermGenie stem epidermis colour (exact) TO:TermGenie stem epidermis relative color (exact) TO:TermGenie A flower color trait (TO:0000537) which is the color of a disk flower (PO:0025332). marieangelique.laporte 2016-01-05T14:21:10Z disc floret color (exact) disk floret color (exact) plant_trait_ontology TO:1000019 disk flower color true true A flower color trait (TO:0000537) which is the color of a disk flower (PO:0025332). TO:TermGenie disc floret color (exact) TO:TermGenie disk floret color (exact) TO:TermGenie A cardinal organ part morphology trait (TO:0000754) which is the length of a stipule (PO:0020041). marieangelique.laporte 2016-01-05T14:57:02Z plant_trait_ontology TO:1000020 stipule length true true true A cardinal organ part morphology trait (TO:0000754) which is the length of a stipule (PO:0020041). TO:TermGenie A plant structure morphology trait (TO:0000839) which is a quality of a plant ovary (PO:0009072). cooperl 2016-01-06T01:44:00Z Poaceae ovary morphology (narrow) Zea ovary morphology (narrow) plant_trait_ontology TO:1000021 plant ovary morphology true true A plant structure morphology trait (TO:0000839) which is a quality of a plant ovary (PO:0009072). TO:TermGenie Poaceae ovary morphology (narrow) TO:TermGenie Zea ovary morphology (narrow) TO:TermGenie A collective plant organ structure trait (TO:0000842) which is the quality of an anther (PO:0009066). meiera 2016-02-20T00:23:55Z TO_GIT:385 plant_trait_ontology TO:1000022 anther morphology trait A collective plant organ structure trait (TO:0000842) which is the quality of an anther (PO:0009066). TO:austinmeier A flower bract morphology trait (TO:0000079) which is the quality of a lemma (PO:0009037). cooperl 2016-03-16T10:36:57Z TO_GIT:390 plant_trait_ontology TO:1000023 lemma morphology trait A flower bract morphology trait (TO:0000079) which is the quality of a lemma (PO:0009037). PO:0009037 TO:cooperl A flower bract morphology trait (TO:0000079) which is the quality of a palea (PO:0009038). cooperl 2016-03-17T10:36:57Z TO_GIT:390 plant_trait_ontology TO:1000024 palea morphology trait A flower bract morphology trait (TO:0000079) which is the quality of a palea (PO:0009038). PO:0009038 TO:cooperl An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a root system (PO:0025025). TO_GIT:412 root system Al content (exact) plant_trait_ontology root Al content (related) TO:1000025 root system aluminum content An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root As content (related) TO:1000026 root system arsenic content An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root B content (related) TO:1000027 root system boron content A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Ba content (related) TO:1000028 root system barium content A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Ca content (related) TO:1000029 root system calcium content A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Cd content (related) TO:1000030 root system cadmium content A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Co content (related) TO:1000031 root system cobalt content A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a root system (PO:0025025). plant_trait_ontology root Cr content (related) TO:1000032 root system chromium content A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Cu content (related) TO:1000033 root system copper content A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a root system (PO:0025025). plant_trait_ontology root Fe content (related) TO:1000034 root system iron content An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a root system (PO:0025025). plant_trait_ontology root I content (related) TO:1000035 root system iodine content An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root K content (related) TO:1000036 root system potassium content A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Li content (related) TO:1000037 root system lithium content A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Mg content (related) TO:1000038 root system magnesium content A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Mn content (related) TO:1000039 root system manganese content A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A molybdenum content trait (TO:0006056) which is the molybdenum cation (CHEBI:37239) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Mo content (related) TO:1000040 root system molybdenum content A molybdenum content trait (TO:0006056) which is the molybdenum cation (CHEBI:37239) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Na content (related) TO:1000041 root system sodium content A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Ni content (related) TO:1000042 root system nickel content A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A phosphorus content trait TO:0001024 which is the phosphorus cation (CHEBI:33467) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root P content (related) TO:1000043 root system phosphorus content A phosphorus content trait TO:0001024 which is the phosphorus cation (CHEBI:33467) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Pb content (related) TO:1000044 root system lead content A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Rb content (related) TO:1000045 root system rubidium content A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root S content (related) TO:1000046 root system sulfur content A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Se content (related) TO:1000047 root system selenium content A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Si content (related) TO:1000048 root system silicon content A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Sr content (related) TO:1000049 root system strontium content A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a root system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in a root system (PO:0025025). TO_GIT:412 plant_trait_ontology root Zn content (related) TO:1000050 root system zinc content A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in a root system (PO:0025025). CHEBI:63056 TO:cooperl https://search.proquest.com/docview/1426182399 An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a shoot system (PO:0009006). TO_GIT:412 shoot system Al content (exact) plant_trait_ontology shoot Al content (related) TO:1000051 shoot system aluminum content An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot As content (related) TO:1000052 shoot system arsenic content An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot B content (related) TO:1000053 shoot system boron content A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Ba content (related) TO:1000054 shoot system barium content A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a shoot system (PO:0025025). TO_GIT:412 plant_trait_ontology shoot Ca content (related) TO:1000055 shoot system calcium content A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a shoot system (PO:0025025). TO:cooperl https://search.proquest.com/docview/1426182399 A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Cd content (related) TO:1000056 shoot system cadmium content A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Co content (related) TO:1000057 shoot system cobalt content A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Cr content (related) TO:1000058 shoot system chromium content A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Cu content (related) TO:1000059 shoot system copper content A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Fe content (related) TO:1000060 shoot system iron content An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot I content (related) TO:1000061 shoot system iodine content An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Li content (related) TO:1000062 shoot system lithium content A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Mg content (related) TO:1000063 shoot system magnesium content A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Mn content (related) TO:1000064 shoot system manganese content A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A molybdenum content trait (TO:0006056) which is the (CHEBI:37239) in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Mo content (related) TO:1000065 shoot system molybdenum content A molybdenum content trait (TO:0006056) which is the (CHEBI:37239) in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Ni content (related) TO:1000066 shoot system nickel content A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Pb content (related) TO:1000067 shoot system lead content A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Rb content (related) TO:1000068 shoot system rubidium content A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot S content (related) TO:1000069 shoot system sulfur content A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Se content (related) TO:1000070 shoot system selenium content A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Si content (related) TO:1000071 shoot system silicon content A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A strontium content trait (TO:0001050) which is the strontium ion (CHEBI:39130) composition in a shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shoot Sr content (related) TO:1000072 shoot system strontium content A strontium content trait (TO:0001050) which is the strontium ion (CHEBI:39130) composition in a shoot system (PO:0009006). TO:cooperl https://search.proquest.com/docview/1426182399 A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in the shoot system (PO:0009006). TO_GIT:412 plant_trait_ontology shooCFt Zn content (related) TO:1000073 shoot system zinc content A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in the shoot system (PO:0009006). CHEBI:63056 TO:cooperl https://search.proquest.com/docview/1426182399 An essential fatty acid (TO:0000604) content which is the amount of a polyunsaturated, 18 carbon long fatty acid, with three double bonds. Laurel_Cooper 2020-09-16 plant_trait_ontology TO:1000074 There are two forms of linolenic acid, alpha and gamma, depending upon where the double bonds occur. linolenic acid content An essential fatty acid (TO:0000604) content which is the amount of a polyunsaturated, 18 carbon long fatty acid, with three double bonds. CHEBI:25048 TO:cooperl A fatty acid content (TO:0000604) which is the amount of a straight-chain, sixteen-carbon, saturated long-chain fatty acid in a plant structure. Laurel_Cooper 2020-09-16 hexadecanoic acid (exact) plant_trait_ontology TO:1000075 palmitic acid content A fatty acid content (TO:0000604) which is the amount of a straight-chain, sixteen-carbon, saturated long-chain fatty acid in a plant structure. CHEBI:15756 TO:cooperl