format-version: 1.2
ontology: uberon/subsets/digestive-minimal.obo

[Term]
id: UBERON:0000059
name: large intestine
namespace: uberon
def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
subset: major_organ
subset: organ_slim
synonym: "intestinum crassum" RELATED [BTO:0000706]
xref: AAO:0010396
xref: BTO:0000706
xref: EFO:0000840
xref: EMAPA:19252
xref: EV:0100077
xref: FMA:7201
xref: GAID:306
xref: galen:LargeIntestine
xref: MA:0000333
xref: MESH:A.03.492.411.495
xref: MIAA:0000046
xref: ncithesaurus:Large_Intestine
xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
xref: SCTID:181254001
xref: VHOG:0000054
xref: XAO:0000131
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0000061
name: anatomical structure
namespace: uberon
alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094
def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003]
subset: upper_level
synonym: "biological structure" EXACT []
xref: AAO:0010825
xref: AEO:0000003
xref: BILA:0000003
xref: CARO:0000003
xref: EHDAA2:0003003
xref: FBbt:00007001
xref: FMA:67135
xref: GAID:781
xref: HAO:0000003
xref: MA:0003000
xref: MESH:A.13
xref: SCTID:362889002
xref: TAO:0000037
xref: TGMA:0001823
xref: XAO:0003000
xref: ZFA:0000037
is_a: UBERON:0000465 ! material anatomical entity

[Term]
id: UBERON:0000159
name: anal canal
namespace: uberon
def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [Wikipedia:Anal_canal]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult alimentary canal" RELATED []
synonym: "anal canal" EXACT []
synonym: "anal canal viewed anatomically" EXACT []
synonym: "anal pad" RELATED []
synonym: "anatomical anal canal" EXACT []
synonym: "anus" RELATED []
synonym: "canalis analis" RELATED LATIN [Wikipedia:Anal_canal]
synonym: "canalis analis" RELATED [BTO:0001978]
synonym: "cloaca" RELATED []
synonym: "cloacal chamber" RELATED []
synonym: "mesenteron" RELATED []
synonym: "pars analis recti" RELATED [BTO:0001978]
xref: BTO:0001978
xref: EMAPA:18256
xref: FMA:15703
xref: galen:AnalCanal
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray1078.png/200px-Gray1078.png
xref: MA:0000330
xref: ncithesaurus:Anal_Canal
xref: SCTID:245438008
xref: TGMA:0001022
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0006866 ! terminal part of digestive tract

[Term]
id: UBERON:0000160
name: intestine
namespace: uberon
alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338
def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine]
comment: MA also has a class MA:0001524 bowel, not clear how this is different
subset: uberon_slim
subset: vertebrate_core
synonym: "bowel" EXACT []
xref: AAO:0000246
xref: ANISEED:1235303
xref: BTO:0000648
xref: EFO:0000834
xref: EV:0100071
xref: FMA:7199
xref: GAID:295
xref: galen:Intestine
xref: MA:0000328
xref: MA:0001524
xref: MESH:A.03.492.411
xref: MIAA:0000043
xref: ncithesaurus:Intestine
xref: SCTID:256876008
xref: TAO:0001338
xref: VHOG:0000056
xref: WBbt:0005772
xref: XAO:0000129
xref: ZFA:0001338
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0000162
name: cloaca
namespace: uberon
def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class
synonym: "cloacal chamber" RELATED []
synonym: "vent" RELATED []
xref: AAO:0000095
xref: GAID:1206
xref: MESH:A.13.223
xref: ncithesaurus:Cloaca
xref: SCTID:362857006
xref: TAO:0000330
xref: VHOG:0001186
xref: XAO:0000244
xref: ZFA:0000330
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0000163
name: embryonic cloaca
namespace: uberon
def: "Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
comment: compare UBERON:0000162 cloaca
synonym: "cloaca" RELATED SENSU []
xref: EHDAA2:0000256
xref: EHDAA:4895
xref: EMAPA:27573
xref: EMAPA:27638
is_a: UBERON:0000162 ! cloaca
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0000164
name: primitive urogenital sinus
namespace: uberon
def: "Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Definitive_urogenital_sinus]
comment: Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP]
synonym: "fetal UGS" EXACT [PMID:18977204]
synonym: "UGS" EXACT [MP:0010116]
synonym: "urogenital sinus" EXACT [MP:0010116]
xref: EHDAA2:0004060
xref: EHDAA:5029
xref: EHDAA:5919
xref: EMAPA:17211
xref: EMAPA:17379
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: ncithesaurus:Urogenital_Sinus
xref: SCTID:50961009
xref: VHOG:0000414
relationship: part_of UBERON:0000163 ! embryonic cloaca

[Term]
id: UBERON:0000165
name: mouth
namespace: uberon
def: "First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
comment: TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
subset: major_organ
subset: uberon_slim
subset: vertebrate_core
synonym: "adult mouth" EXACT []
synonym: "cavitas oris" RELATED [BTO:0001090]
synonym: "cavum oris" RELATED [BTO:0001090]
synonym: "mouth cavity" RELATED [BTO:0001090]
synonym: "oral vestibule" RELATED [BTO:0001090]
synonym: "os, cavital oralis" RELATED LATIN [Wikipedia:Mouth]
synonym: "regio oralis" EXACT [FMA:49184, FMA:TA]
synonym: "rima oris" RELATED [BTO:0001090]
synonym: "stoma" RELATED []
synonym: "vestibule of mouth" RELATED [BTO:0001090]
synonym: "vestibulum oris" RELATED [BTO:0001090]
xref: AAO:0010355
xref: BTO:0001090
xref: EFO:0000825
xref: FBbt:00003126
xref: FMA:49184
xref: GAID:75
xref: galen:Mouth
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0002474
xref: MAT:0000038
xref: MESH:A.01.456.505.631
xref: MIAA:0000038
xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
xref: TADS:0000040
xref: TAO:0000547
xref: TGMA:0000131
xref: VHOG:0000812
xref: XAO:0003029
xref: ZFA:0000547
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0000166
name: oral opening
namespace: uberon
def: "The opening of the head through which food passes into the body." [NLM:mouth]
comment: note MA includes as parts of 'oral region' the tongue, tonsils, etc, so an equivalence to the oral opening itself may not be appropriate.
subset: uberon_slim
subset: vertebrate_core
synonym: "adult mouth" RELATED []
synonym: "mouth" RELATED []
synonym: "oral fissure" EXACT [FMA:59806]
synonym: "oral orifice" EXACT [FMA:59806]
synonym: "oral part of face" EXACT []
synonym: "oral region" EXACT []
synonym: "orofacial cavity" RELATED []
synonym: "subdivision of mouth" EXACT []
xref: BTO:0004698
xref: EHDAA2:0001326
xref: EHDAA:542
xref: EMAPA:16262
xref: FMA:59806
xref: MA:0000341
xref: TAO:0000590
xref: TGMA:0000131
xref: VHOG:0000280
xref: ZFA:0000590
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0000167
name: oral cavity
namespace: uberon
subset: uberon_slim
subset: vertebrate_core
synonym: "buccal cavity" EXACT [FMA:20292]
synonym: "cavity of mouth" EXACT []
xref: AAO:0000053
xref: AAO:0000960
xref: EFO:0001975
xref: EHDAA2:0001324
xref: EHDAA:6970
xref: EMAPA:17411
xref: EV:0100057
xref: FMA:20292
xref: HAO:0000669
xref: ncithesaurus:Oral_Cavity
xref: SCTID:181220002
xref: TAO:0001027
xref: TGMA:0000102
xref: VHOG:0000188
xref: WBbt:0005255
xref: XAO:0000126
xref: ZFA:0001027
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0000168
name: segment of colon
namespace: uberon
def: "An organ segment that is part of a colon [Obol]." [OBOL:automatic]
xref: FMA:222905
relationship: part_of UBERON:0001155 ! colon

[Term]
id: UBERON:0000314
name: cecum mucosa
namespace: uberon
alt_id: UBERON:BTO_0000213-FMA_14998
def: "A mucosa that is part of a cecum [Obol]." [OBOL:automatic]
synonym: "caecum mucosa" EXACT [OBOL:automatic]
synonym: "caecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "caecum mucous membrane" EXACT [OBOL:automatic]
synonym: "caecum organ mucosa" EXACT [OBOL:automatic]
synonym: "Cecal mucosa" EXACT [FMA:14998]
synonym: "cecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "cecum mucous membrane" EXACT [OBOL:automatic]
synonym: "cecum organ mucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucous membrane" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of caecum" EXACT [OBOL:automatic]
synonym: "mucosa of cecum" EXACT [OBOL:automatic]
synonym: "mucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of caecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of caecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of cecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of caecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of cecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
xref: BTO:0000213
xref: FMA:14998
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001153 ! caecum

[Term]
id: UBERON:0000317
name: colonic mucosa
namespace: uberon
alt_id: UBERON:0003347
alt_id: UBERON:0004981
alt_id: UBERON:BTO_0000271-FMA_14984
def: "A mucosa that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon mucosa" EXACT [FMA:14984]
synonym: "colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "colon mucous membrane" EXACT [OBOL:automatic]
synonym: "colon organ mucosa" EXACT [OBOL:automatic]
synonym: "colonic mucous membrane" EXACT [FMA:14984]
synonym: "large bowel mucosa" EXACT [OBOL:automatic]
synonym: "large bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "large bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "large bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of colon" EXACT [FMA:14984]
synonym: "mucosa of large bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of colon" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large bowel" EXACT [OBOL:automatic]
synonym: "mucosa of segment of colon" EXACT [FMA:85388]
synonym: "mucous membrane of colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of large bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of large bowel" EXACT [OBOL:automatic]
xref: BTO:0000271
xref: EFO:0003038
xref: EMAPA:27375
xref: FMA:14984
xref: FMA:85388
xref: SCTID:362157008
is_a: UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001155 ! colon

[Term]
id: UBERON:0000320
name: duodenal mucosa
namespace: uberon
alt_id: UBERON:0003348
alt_id: UBERON:BTO_0000367-FMA_14942
def: "A mucosa that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "Doudenal mucosa" EXACT [FMA:14942]
synonym: "Duodenal mucous membrane" EXACT [FMA:14942]
synonym: "duodenum mucosa" RELATED [BTO:0000367]
synonym: "mucosa of duodenum" EXACT [OBOL:automatic]
synonym: "mucous membrane of duodenum" EXACT [OBOL:automatic]
xref: BTO:0000367
xref: EMAPA:27235
xref: FMA:14942
xref: SCTID:362146003
is_a: UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002114 ! duodenum

[Term]
id: UBERON:0000325
name: gastric gland
namespace: uberon
alt_id: UBERON:BTO_0000503-FMA_14919
def: "any of the branched tubules in the inner lining of the stomach that secrete gastric juice and protective mucus." []
subset: grouping_class
subset: organ_slim
xref: BTO:0000503
xref: FMA:14919
is_a: UBERON:0003294 ! gland of foregut
relationship: part_of UBERON:0006924 {source="ISBN10:0073040584"} ! stomach glandular epithelium

[Term]
id: UBERON:0000328
name: gut wall
namespace: uberon
alt_id: UBERON:BTO_0000547-FMA_45653
synonym: "wall of gut" EXACT [FMA:45653]
xref: BTO:0000547
xref: FMA:45653
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0000331
name: ileal mucosa
namespace: uberon
alt_id: UBERON:BTO_0000619-FMA_14956
def: "A mucosa that is part of a ileum [Obol]." [OBOL:automatic]
synonym: "Ileal mucous membrane" EXACT [FMA:14956]
synonym: "Ileum mucosa" EXACT [FMA:14956]
synonym: "ileum mucosa" EXACT [OBOL:automatic]
synonym: "ileum mucosa of organ" EXACT [OBOL:automatic]
synonym: "ileum mucous membrane" EXACT [OBOL:automatic]
synonym: "ileum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ileum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ileum" EXACT [OBOL:automatic]
synonym: "mucous membrane of ileum" EXACT [OBOL:automatic]
synonym: "organ mucosa of ileum" EXACT [OBOL:automatic]
xref: BTO:0000619
xref: FMA:14956
xref: SCTID:85458007
is_a: UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002116 ! ileum

[Term]
id: UBERON:0000333
name: intestinal gland
namespace: uberon
alt_id: UBERON:BTO_0000640-FMA_15052
def: "A gland that is part of a intestinal mucosa [Obol]." [OBOL:automatic]
comment: TODO check UBERON:0001983
subset: organ_slim
synonym: "bowel mucosa gland" EXACT [OBOL:automatic]
synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic]
synonym: "bowel mucous membrane gland" EXACT [OBOL:automatic]
synonym: "bowel organ mucosa gland" EXACT [OBOL:automatic]
synonym: "crypt of Lieberkuehn" RELATED [BTO:0000640]
synonym: "gland of bowel mucosa" EXACT [OBOL:automatic]
synonym: "gland of bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "gland of bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "gland of bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestinal mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestine mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "gland of intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "gland of intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "gland of Lieberkuehn" RELATED [BTO:0000640]
synonym: "gland of mucosa of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucosa of intestine" EXACT [OBOL:automatic]
synonym: "gland of mucosa of organ of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucosa of organ of intestine" EXACT [OBOL:automatic]
synonym: "gland of mucous membrane of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucous membrane of intestine" EXACT [OBOL:automatic]
synonym: "gland of organ mucosa of bowel" EXACT [OBOL:automatic]
synonym: "gland of organ mucosa of intestine" EXACT [OBOL:automatic]
synonym: "Glandula intestinalis" EXACT [FMA:15052]
synonym: "intestinal mucosa gland" EXACT [OBOL:automatic]
synonym: "intestine mucosa gland" EXACT [OBOL:automatic]
synonym: "intestine mucosa of organ gland" EXACT [OBOL:automatic]
synonym: "intestine mucous membrane gland" EXACT [OBOL:automatic]
synonym: "intestine organ mucosa gland" EXACT [OBOL:automatic]
synonym: "Lieberkuehn`s gland" RELATED [BTO:0000640]
synonym: "mucosa of bowel gland" EXACT [OBOL:automatic]
synonym: "mucosa of intestine gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bowel gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestine gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of bowel gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestine gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of bowel gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestine gland" EXACT [OBOL:automatic]
xref: BTO:0000640
xref: FMA:15052
xref: SCTID:266297002
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0001242 ! intestinal mucosa

[Term]
id: UBERON:0000355
name: pharyngeal mucosa
namespace: uberon
alt_id: UBERON:0003344
alt_id: UBERON:BTO_0001047-FMA_55031
def: "A mucosa that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "Mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047]
synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx mucosa" EXACT [OBOL:automatic]
synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa pharyngea" EXACT [FMA:55031, FMA:TA]
synonym: "tunica mucosa pharyngis" EXACT []
xref: BTO:0001047
xref: EMAPA:26957
xref: EMAPA:26965
xref: FMA:55031
xref: SCTID:362121003
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0000378
name: tongue muscle
namespace: uberon
alt_id: UBERON:BTO_0001386-FMA_46689
def: "the muscular portion of the tongue." [MP:0004136, Wikipedia:Muscles_of_tongue]
synonym: "muscle of tongue" EXACT [FMA:46689]
synonym: "musculi linguae" RELATED LATIN [Wikipedia:Muscles_of_tongue]
xref: BTO:0001386
xref: FMA:46689
xref: ncithesaurus:Tongue_Muscle
xref: SCTID:244781004
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0000388
name: epiglottis
namespace: uberon
alt_id: UBERON:BTO_0001628-FMA_55130
def: "a flap of elastic cartilage tissue covered with a mucous membrane, attached to the entrance of the larynx. It projects obliquely upwards behind the tongue and the hyoid bone, pointing dorsally." [Wikipedia:Epiglottis]
comment: Editor note: refine definition to better distinguish cartilage from the whole structure
synonym: "Pronounced" RELATED LATIN [Wikipedia:Epiglottis]
xref: BTO:0001628
xref: EHDAA2:0004081
xref: EMAPA:18289
xref: FMA:55130
xref: GAID:111
xref: MESH:A.02.165.507.411
xref: ncithesaurus:Epiglottis
xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA
xref: SCTID:245502004
property_value: RO:0002161 NCBITaxon:8782
relationship: part_of UBERON:0001051 ! hypopharynx

[Term]
id: UBERON:0000396
name: vallate papilla
namespace: uberon
alt_id: UBERON:0002927
alt_id: UBERON:BTO_0001705-FMA_71449
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4106_2-MA_0001594
def: "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongue" [BTO:0001705, Wikipedia:Vallate_papilla]
synonym: "circumvallate papilla" EXACT [MA:0001594]
synonym: "circumvallate papilla of tongue" EXACT [FMA:54822]
synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA]
synonym: "Vallate papilla of tongue" EXACT []
xref: BTO:0001705
xref: EMAPA:18271
xref: EMAPA:18654
xref: EMAPA:18871
xref: FMA:54822
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1015.png/200px-Gray1015.png
xref: MA:0001594
xref: ncithesaurus:Circumvallate_Papilla
xref: NIF_GrossAnatomy:birnlex_4106_2
is_a: UBERON:0001726 ! papilla of tongue

[Term]
id: UBERON:0000397
name: colonic epithelium
namespace: uberon
alt_id: UBERON:BTO_0001709-FMA_17302
def: "An epithelium that is part of a colon [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "colon epithelial tissue" EXACT [OBOL:automatic]
synonym: "Colon epithelium" EXACT [FMA:17302]
synonym: "colon epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of colon" EXACT [OBOL:automatic]
synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic]
synonym: "epithelium of colon" EXACT [OBOL:automatic]
synonym: "epithelium of large bowel" EXACT [OBOL:automatic]
synonym: "large bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "large bowel epithelium" EXACT [OBOL:automatic]
synonym: "posterior intestine epithelium" EXACT [ZFA:0005128]
xref: BTO:0001709
xref: FMA:17302
xref: SCTID:42978003
xref: TAO:0005128
xref: ZFA:0005128
is_a: UBERON:0001278 ! epithelium of large intestine
relationship: part_of UBERON:0001155 ! colon

[Term]
id: UBERON:0000399
name: jejunal mucosa
namespace: uberon
alt_id: UBERON:0003349
alt_id: UBERON:BTO_0001742-FMA_14949
def: "A mucosa that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal mucous membrane" EXACT [FMA:14949]
synonym: "jejunum mucosa" EXACT [FMA:14949]
synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic]
synonym: "jejunum mucous membrane" EXACT [OBOL:automatic]
synonym: "jejunum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of jejunum" EXACT [FMA:14949]
synonym: "mucosa of organ of jejunum" EXACT [OBOL:automatic]
synonym: "mucous membrane of jejunum" EXACT [OBOL:automatic]
synonym: "organ mucosa of jejunum" EXACT [OBOL:automatic]
xref: BTO:0001742
xref: EMAPA:27109
xref: EMAPA:27347
xref: FMA:14949
xref: SCTID:362151009
is_a: UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002115 ! jejunum

[Term]
id: UBERON:0000400
name: jejunal epithelium
namespace: uberon
alt_id: UBERON:BTO_0001743-FMA_17232
xref: BTO:0001743
xref: FMA:17232
xref: SCTID:57300004
is_a: UBERON:0001902 {source="BTO"} ! epithelium of small intestine
relationship: part_of UBERON:0002115 ! jejunum
relationship: part_of UBERON:0008343 {source="FMA"} ! intestinal villus of jejunum

[Term]
id: UBERON:0000424
name: gastric pit
namespace: uberon
alt_id: UBERON:0000425
alt_id: UBERON:BTO_0002364-FMA_62947
def: "Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits." [Wikipedia:Gastric_pits]
synonym: "foveola gastrica" RELATED [BTO:0002364]
synonym: "foveolae gastricae" EXACT PLURAL [FMA:76583, FMA:TA]
synonym: "foveolae gastricae" RELATED LATIN [Wikipedia:Gastric_pits]
synonym: "gastric foveola" EXACT [FMA:62947]
xref: BTO:0002364
xref: FMA:62947
xref: ncithesaurus:Gastric_Pit
xref: SCTID:268426007
relationship: part_of UBERON:0001199 {source="BTO"} ! mucosa of stomach

[Term]
id: UBERON:0000465
name: material anatomical entity
namespace: uberon
alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487
def: "Anatomical entity that has mass." [CARO:MAH]
subset: upper_level
xref: AAO:0010264
xref: AEO:0000006
xref: BILA:0000006
xref: CARO:0000006
xref: EHDAA2:0003006
xref: FBbt:00007016
xref: FMA:67165
xref: HAO:0000006
xref: TAO:0001836
xref: TGMA:0001826
is_a: UBERON:0001062 ! anatomical entity

[Term]
id: UBERON:0000467
name: anatomical system
namespace: uberon
alt_id: UBERON:CARO_0000011-XAO_0003002-ZFA_0001439
alt_id: UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176
def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system]
subset: uberon_slim
subset: upper_level
synonym: "body system" EXACT [NIF_GrossAnatomy:birnlex_14]
synonym: "organ system" EXACT []
synonym: "system" BROAD [GO:0048731]
xref: AAO:0000007
xref: AEO:0000011
xref: BILA:0000011
xref: CARO:0000011
xref: EHDAA2:0001330
xref: EHDAA2:0003011
xref: EHDAA:392
xref: EMAPA:16103
xref: EV:0100000
xref: FBbt:00004856
xref: FMA:7149
xref: galen:AnatomicalSystem
xref: HAO:0000011
xref: MA:0000003
xref: ncithesaurus:Organ_System
xref: NIF_GrossAnatomy:birnlex_14
xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ
xref: SCTID:278195005
xref: TAO:0001439
xref: TGMA:0001831
xref: WBbt:0005746
xref: XAO:0003002
xref: ZFA:0001439
is_a: UBERON:0000480 ! anatomical group

[Term]
id: UBERON:0000480
name: anatomical group
namespace: uberon
alt_id: UBERON:CARO_0000054-XAO_0003001-ZFA_0001512
def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH]
subset: upper_level
xref: AAO:0010008
xref: AEO:0000054
xref: BILA:0000054
xref: CARO:0000054
xref: EHDAA2:0003054
xref: HAO:0000054
xref: TAO:0001512
xref: TGMA:0001846
xref: XAO:0003001
xref: ZFA:0001512
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0000569
name: ileocecal valve
namespace: uberon
def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [Wikipedia:Ileocecal_valve]
synonym: "Tulp's valve" RELATED [Wikipedia:Ileocecal_valve]
synonym: "valva ileocaecalis" RELATED LATIN [Wikipedia:Ileocecal_valve]
synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973]
xref: FMA:15973
xref: galen:IleocecalValve
xref: ncithesaurus:Ileocecal_Valve
xref: SCTID:362153007
relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction

[Term]
id: UBERON:0000933
name: pharyngeal muscle
namespace: uberon
alt_id: UBERON:FBbt_00000487-FMA_46619-MA_0001797
def: "A muscle that forms part of the pharynx." [GO:0043282, Wikipedia:Pharyngeal_muscles]
comment: todo - add asserted children and check logical definition against these; e.g. is stylopharyngeus part of the pharynx?
synonym: "muscle of pharynx" EXACT []
synonym: "muscle organ of pharynx" EXACT [OBOL:automatic]
synonym: "musculi pharyngis; tunica muscularis pharyngis" RELATED LATIN [Wikipedia:Pharyngeal_muscles]
synonym: "musculus pharyngis" RELATED [BTO:0001048]
synonym: "pharynx muscle" EXACT []
synonym: "pharynx muscle organ" EXACT [OBOL:automatic]
xref: BTO:0001048
xref: FMA:46619
xref: GAID:154
xref: MA:0001797
xref: MESH:A.02.633.567.800
xref: ncithesaurus:Pharyngeal_Muscle
xref: SCTID:244798004
xref: TAO:0000172
xref: ZFA:0000172
relationship: part_of UBERON:0004467 ! musculature of pharynx
relationship: part_of UBERON:0006562 ! pharynx

[Term]
id: UBERON:0000945
name: stomach
namespace: uberon
alt_id: UBERON:FBbt_00003138-FMA_7148-MA_0000353-MIAA_0000051-XAO_0000128
def: "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium." [ISBN10:0073040584, UBERON:cjm, Wikipedia:Stomach]
comment: Taxon notes: We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa -- Stomach#In_other_animals
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior intestine" RELATED []
synonym: "gaster" RELATED [BTO:0001307]
synonym: "mesenteron" RELATED []
synonym: "stomach" RELATED []
synonym: "Ventricular" RELATED LATIN [Wikipedia:Stomach]
synonym: "ventriculus" RELATED []
xref: AAO:0000579
xref: ANISEED:1235297
xref: BTO:0001307
xref: EFO:0000837
xref: EHDAA2:0001915
xref: EHDAA:2993
xref: EMAPA:17021
xref: EMAPA:18889
xref: EV:0100070
xref: FMA:7148
xref: GAID:293
xref: galen:Stomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Stomach_diagram.svg/200px-Stomach_diagram.svg.png
xref: MA:0000353
xref: MAT:0000051
xref: MESH:A.03.492.766
xref: MIAA:0000051
xref: ncithesaurus:Stomach
xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA
xref: SCTID:181246003
xref: TAO:0002121
xref: VHOG:0000408
xref: XAO:0000128
property_value: RO:0002161 NCBITaxon:7955
is_a: UBERON:0010039 ! food storage organ
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0001007
name: digestive system
namespace: uberon
alt_id: UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339
def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system\,]
comment: note that many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class
subset: uberon_slim
subset: vertebrate_core
synonym: "alimentary system" RELATED []
synonym: "alimentary tract" RELATED []
synonym: "gastrointestinal system" RELATED []
synonym: "gut" RELATED []
xref: AAO:0000129
xref: BILA:0000082
xref: BTO:0000058
xref: EFO:0000793
xref: EV:0100056
xref: FBbt:00005055
xref: FMA:7152
xref: GAID:278
xref: galen:DigestiveSystem
xref: MA:0002431
xref: MAT:0000018
xref: MESH:A.03
xref: MIAA:0000018
xref: ncithesaurus:Digestive_System
xref: SCTID:278859004
xref: TADS:0000170
xref: TAO:0000339
xref: WBbt:0005748
xref: XAO:0000125
xref: ZFA:0000339
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002423 ! hepatobiliary system

[Term]
id: UBERON:0001041
name: foregut
namespace: uberon
alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
def: "Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
synonym: "praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut]
xref: AAO:0011042
xref: BILA:0000085
xref: BTO:0000507
xref: EHDAA2:0000557
xref: EHDAA:520
xref: EMAPA:16548
xref: FBbt:00005379
xref: FMA:45616
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png
xref: MA:0001526
xref: ncithesaurus:Foregut
xref: SCTID:361409009
xref: TGMA:0001014
xref: VHOG:0000285
xref: XAO:0000232
is_a: UBERON:0004921 ! subdivision of digestive tract

[Term]
id: UBERON:0001042
name: chordate pharynx
namespace: uberon
alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056
def: "Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [Wikipedia:Pharynx]
comment: Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here
subset: uberon_slim
subset: vertebrate_core
synonym: "pharynx" BROAD SENSU [FMA:46688]
xref: AAO:0000967
xref: BTO:0001049
xref: EFO:0000836
xref: EHDAA2:0001458
xref: EHDAA:2947
xref: EMAPA:16706
xref: EMAPA:18838
xref: EV:0100065
xref: FMA:46688
xref: GAID:155
xref: galen:Pharynx
xref: MA:0000432
xref: MESH:A.03.867
xref: ncithesaurus:Pharynx
xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA
xref: TAO:0000056
xref: VHOG:0000462
xref: XAO:0003227
xref: ZFA:0000056
is_a: UBERON:0006562 ! pharynx
relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region

[Term]
id: UBERON:0001043
name: esophagus
namespace: uberon
alt_id: UBERON:FBbt_00005381-FMA_7131-MA_0000352-MIAA_0000048-XAO_0000127-ZFA_0000204
def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [http://www.rivm.nl/interspeciesinfo/inter/oesophagus/, Wikipedia:Esophagus]
comment: esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies:  The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995)
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gullet" EXACT []
synonym: "oesophagus" EXACT []
synonym: "�?sophagus" RELATED LATIN [Wikipedia:Esophagus]
xref: AAO:0000145
xref: ANISEED:1235301
xref: BTO:0000959
xref: EFO:0000835
xref: EHDAA2:0001285
xref: EHDAA:2937
xref: EMAPA:16833
xref: EMAPA:18860
xref: EV:0100069
xref: FMA:7131
xref: GAID:291
xref: galen:Esophagus
xref: MA:0000352
xref: MAT:0000048
xref: MESH:A.03.365
xref: MIAA:0000048
xref: ncithesaurus:Esophagus
xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA
xref: SCTID:181245004
xref: TAO:0000204
xref: VHOG:0000450
xref: XAO:0000127
xref: ZFA:0000204
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0009143 ! esophageal region
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0001044
name: salivary gland
namespace: uberon
alt_id: UBERON:FBbt_00005382-FMA_9597-MA_0000346-MIAA_0000079
def: "saliva-secreting exocrine glands of the oral cavity[GO]. The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research[WP]." [GO:0007431, Wikipedia:Salivary_gland]
comment: currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals.[3] The salivary glands of some species, however, are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands
subset: functional_classification
subset: organ_slim
subset: uberon_slim
synonym: "glandulae salivariae" RELATED LATIN [Wikipedia:Salivary_gland]
xref: BTO:0001203
xref: EFO:0000859
xref: EHDAA2:0001775
xref: EHDAA:7987
xref: EMAPA:17751
xref: EV:0100059
xref: FBbt:00005382
xref: FMA:9597
xref: GAID:937
xref: galen:SalivaryGland
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0000346
xref: MAT:0000079
xref: MESH:A.10.336.779
xref: MIAA:0000079
xref: ncithesaurus:Salivary_Gland
xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA
xref: SCTID:181236000
xref: VHOG:0000376
is_a: UBERON:0003293 ! gland of oral region
is_a: UBERON:0003294 ! gland of foregut
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0001045
name: midgut
namespace: uberon
alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103
def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
synonym: "mesenteron" RELATED LATIN [Wikipedia:Midgut]
xref: BILA:0000086
xref: BTO:0000863
xref: EFO:0001950
xref: EHDAA2:0001185
xref: EHDAA:983
xref: EMAPA:16255
xref: FBbt:00005383
xref: FMA:45617
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg
xref: MA:0001564
xref: ncithesaurus:Midgut
xref: SCTID:361410004
xref: TGMA:0001036
xref: VHOG:0000290
xref: XAO:0000103
is_a: UBERON:0004921 ! subdivision of digestive tract

[Term]
id: UBERON:0001046
name: hindgut
namespace: uberon
alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104
def: "Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future (vertebrates have some contribution from NC - UBERONREF:0000002). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
synonym: "metenteron" RELATED LATIN [Wikipedia:Hindgut]
xref: AAO:0011052
xref: BILA:0000087
xref: BTO:0000510
xref: EHDAA2:0000779
xref: EHDAA:975
xref: EMAPA:16715
xref: FBbt:00005384
xref: FMA:45618
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png
xref: MA:0001527
xref: ncithesaurus:Hindgut
xref: SCTID:362856002
xref: TGMA:0001020
xref: VHOG:0000459
xref: XAO:0000104
is_a: UBERON:0004921 ! subdivision of digestive tract

[Term]
id: UBERON:0001051
name: hypopharynx
namespace: uberon
alt_id: UBERON:FBbt_00005751-FMA_54880-MA_0001796
def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx]
subset: uberon_slim
synonym: "laryngeal pharynx" EXACT [FMA:54877]
synonym: "laryngopharynx" EXACT [FMA:54877]
synonym: "pars laryngea pharyngis" RELATED [BTO:0001740]
synonym: "pars laryngea pharyngis" RELATED LATIN [Wikipedia:Hypopharynx]
xref: BTO:0001740
xref: EFO:0001388
xref: EHDAA2:0004574
xref: EV:0100068
xref: FMA:54880
xref: GAID:338
xref: MA:0001796
xref: MESH:A.03.867.490
xref: ncithesaurus:Hypopharynx
xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA
xref: SCTID:281490009
xref: VHOG:0000445
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0001052
name: rectum
namespace: uberon
alt_id: UBERON:FBbt_00005756-FMA_14544-MA_0000336-MIAA_0000050-WBbt_0005773-XAO_0000238
def: "the final straight portion of the large intestine in some mammals, and the gut in others, terminating in the anus[WP]." [BTO:0001158, Wikipedia:Rectum]
comment: Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html
subset: uberon_slim
synonym: "intestinum rectum" RELATED [BTO:0001158]
synonym: "rectal sac" RELATED []
xref: AAO:0010401
xref: BTO:0001158
xref: EFO:0000848
xref: EHDAA2:0001592
xref: EHDAA:5836
xref: EMAPA:17896
xref: EMAPA:18925
xref: EV:0100081
xref: FMA:14544
xref: GAID:311
xref: galen:Rectum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0000336
xref: MAT:0000050
xref: MESH:A.03.492.411.495.767
xref: MIAA:0000050
xref: ncithesaurus:Rectum
xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA
xref: SCTID:181261002
xref: VHOG:0000427
xref: WBbt:0005773
xref: XAO:0000238
relationship: continuous_with UBERON:0001159 ! sigmoid colon
relationship: continuous_with UBERON:0001245 ! anus
relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut
relationship: part_of UBERON:0000059 {source="MA"} ! large intestine
relationship: part_of UBERON:0004907 {source="FMA"} ! lower digestive tract
relationship: part_of UBERON:0005409 {source="FMA"} ! gastrointestinal system

[Term]
id: UBERON:0001062
name: anatomical entity
namespace: uberon
alt_id: UBERON:FBbt_root_00000000-FMA_62955
def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955]
subset: upper_level
xref: AAO:0010841
xref: AEO:0000000
xref: BILA:0000000
xref: CARO:0000000
xref: EHDAA2:0002229
xref: FBbt_root:00000000
xref: FMA:62955
xref: HAO:0000000
xref: MA:0000001
xref: NIF_GrossAnatomy:birnlex_6
xref: TAO:0100000
xref: TGMA:0001822
xref: ZFA:0100000

[Term]
id: UBERON:0001064
name: ventral pancreatic duct
namespace: uberon
alt_id: UBERON:0005627
alt_id: UBERON:FMA_10419-MA_0000124-ZFA_0001372
def: "a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct]
comment: Development notes: Upon reaching its final destination, the ventral pancreatic bud fuses with the much larger dorsal pancreatic bud. At this point of fusion, the main ducts of the ventral and dorsal pancreatic buds fuse, forming the duct of Wirsung, the main pancreatic duct.[WP]
subset: uberon_slim
synonym: "canal of Wirsung" RELATED [BTO:0002362]
synonym: "chief pancreatic duct" EXACT [FMA:16003]
synonym: "duct of Wirsung" EXACT [Wikipedia:Pancreatic_duct]
synonym: "hepaticopancreatic duct" RELATED [BTO:0002362]
synonym: "main pancreatic duct" EXACT [MA:0000126]
synonym: "pancreatic duct" BROAD [MESH:A.03.734.667]
xref: BTO:0002362
xref: EHDAA2:0001396
xref: EHDAA:6905
xref: EMAPA:18821
xref: FMA:16003
xref: GAID:337
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1100.png/200px-Gray1100.png
xref: MA:0000126
xref: MESH:A.03.734.667
xref: ncithesaurus:Pancreatic_Duct
xref: RETIRED_EHDAA2:0002177
xref: SCTID:245385001
xref: VHOG:0000256
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0007329 {source="FMA"} ! pancreatic duct
relationship: channels_into UBERON:0004913 ! hepatopancreatic ampulla
relationship: continuous_with UBERON:0001174 ! common bile duct

[Term]
id: UBERON:0001065
name: parotid duct
namespace: uberon
alt_id: UBERON:FMA_10420-MA_0002697
def: "The parotid duct, also known as Stensen's duct, is the route that saliva takes from the parotid gland into the mouth. It passes through the buccal fat, buccopharyngeal fascia, and buccinator muscle then opens into the vestibule of the mouth opposite the upper second molar tooth. The buccinator acts as a valve that prevents inflation of the duct during blowing. Running along with the duct superiorly is the transverse facial artery and upper buccal nerve; running along with the duct inferiorly is the lower buccal nerve. [WP,unvetted]." [Wikipedia:Parotid_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "duct of parotid" EXACT [OBOL:automatic]
synonym: "duct of parotid gland" EXACT []
synonym: "ductus parotideus" RELATED LATIN [Wikipedia:Parotid_duct]
synonym: "parotid gland duct" EXACT [OBOL:automatic]
synonym: "stenon duct" EXACT []
synonym: "Stensen's duct" EXACT []
synonym: "Stensens's duct" EXACT []
xref: BTO:0004554
xref: FMA:10420
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray1023.png/200px-Gray1023.png
xref: MA:0002697
xref: ncithesaurus:Parotid_Duct
xref: SCTID:362175009
is_a: UBERON:0001837 ! duct of salivary gland
relationship: channels_from UBERON:0001831 ! parotid gland
relationship: part_of UBERON:0001831 ! parotid gland

[Term]
id: UBERON:0001073
name: ileocecal junction
namespace: uberon
alt_id: UBERON:FMA_11338-MA_0000332
comment: This class was created automatically from a combination of ontologies
synonym: "ileocaecal junction" EXACT []
xref: FMA:11338
xref: MA:0000332
xref: SCTID:264021000
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0001091
name: calcareous tooth
namespace: uberon
alt_id: UBERON:FMA_12516-MA_0000348-MIAA_0000041-XAO_0000431-ZFA_0000644-ZFA_0000694
def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [FMA:12516, Wikipedia:Tooth, Wikipedia:Tooth_(animal)]
subset: uberon_slim
subset: vertebrate_core
synonym: "ceratobranchial 5 tooth" NARROW []
synonym: "dentine containing tooth" EXACT []
synonym: "tooth" EXACT []
synonym: "vertebrate tooth" EXACT []
xref: AEO:0000220
xref: BTO:0000397
xref: EFO:0000839
xref: EHDAA2:0004605
xref: EHDAA:8009
xref: EHDAA:8045
xref: EMAPA:17917
xref: EMAPA:17938
xref: EV:0100063
xref: FMA:12516
xref: GAID:1260
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Teeth_by_David_Shankbone.jpg/200px-Teeth_by_David_Shankbone.jpg
xref: MA:0000348
xref: MAT:0000041
xref: MESH:A.14.254.860
xref: MIAA:0000041
xref: ncithesaurus:Tooth
xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA
xref: SCTID:302214001
xref: TAO:0000694
xref: TAO:0001625
xref: VHOG:0000127
xref: XAO:0000431
xref: ZFA:0000694
property_value: RO:0002161 NCBITaxon:8782
relationship: develops_from UBERON:0005087 {evidence="definitional"} ! tooth placode
relationship: develops_from UBERON:0005176 {source="ZFA"} ! tooth enamel organ
relationship: has_part UBERON:0001751 ! dentine
relationship: has_part UBERON:0001752 ! enamel
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0000166 ! oral opening

[Term]
id: UBERON:0001096
name: wall of esophagus
namespace: uberon
alt_id: UBERON:FMA_12611-MA_0002691
def: "An anatomical wall that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic]
synonym: "anatomical wall of gullet" EXACT [OBOL:automatic]
synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic]
synonym: "esophageal wall" EXACT []
synonym: "esophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "esophagus wall" EXACT []
synonym: "gullet anatomical wall" EXACT [OBOL:automatic]
synonym: "gullet wall" EXACT [OBOL:automatic]
synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "oesophagus wall" EXACT [OBOL:automatic]
synonym: "wall of gullet" EXACT [OBOL:automatic]
synonym: "wall of oesophagus" EXACT [OBOL:automatic]
xref: FMA:12611
xref: MA:0002691
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0001098
name: incisor tooth
namespace: uberon
alt_id: UBERON:FMA_12823-MA_0000349
def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [Wikipedia:Incisor_tooth]
comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight � one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat
subset: uberon_slim
synonym: "incisor" EXACT [MA:0000349]
xref: BTO:0001741
xref: EHDAA:8011
xref: EHDAA:8047
xref: FMA:12823
xref: GAID:1263
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Gray997.png/200px-Gray997.png
xref: MA:0000349
xref: MESH:A.14.254.860.425
xref: ncithesaurus:Incisor
xref: OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA
xref: SCTID:420856006
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003672 ! dentition

[Term]
id: UBERON:0001107
name: sternohyoid
namespace: uberon
alt_id: UBERON:FMA_13341-MA_0002383-ZFA_0000283
def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid_muscle]
comment: todo - add taxon restriction
subset: uberon_slim
subset: vertebrate_core
synonym: "musculus sternohyoideus" RELATED LATIN [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoid muscle" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoidei" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoideus" RELATED [Wikipedia:Sternohyoid_muscle]
xref: EMAPA:19271
xref: FMA:13341
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Sternohyoid_muscle.PNG/200px-Sternohyoid_muscle.PNG
xref: MA:0002383
xref: ncithesaurus:Sternohyoid
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001108
name: omohyoid
namespace: uberon
alt_id: UBERON:FMA_13342-MA_0002348
def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid_muscle]
comment: interior and superior belly
subset: uberon_slim
synonym: "musculus omohyoideus" RELATED LATIN [Wikipedia:Omohyoid_muscle]
synonym: "omohyoid muscle" EXACT []
synonym: "omohyoideus" EXACT [Wikipedia:Omohyoid_muscle]
synonym: "omohyoideus muscle" EXACT [Wikipedia:Omohyoid_muscle]
xref: FMA:13342
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Gray1210.png/200px-Gray1210.png
xref: MA:0002348
xref: ncithesaurus:Omohyoid
xref: SCTID:244833001
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001109
name: sternothyroid
namespace: uberon
alt_id: UBERON:FMA_13343-MA_0002386
def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid_muscle]
comment: ZFA has structure of same name that is mandibular
subset: uberon_slim
synonym: "musculus sternothyroideus" RELATED LATIN [Wikipedia:Sternothyroid_muscle]
synonym: "sterno-hyoid" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoid muscle" EXACT []
synonym: "sternohyoidei" RELATED PLURAL [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoideus" RELATED [Wikipedia:Sternohyoid_muscle]
xref: EMAPA:19272
xref: FMA:13343
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Sternothyroideus.png/200px-Sternothyroideus.png
xref: MA:0002386
xref: ncithesaurus:Sternothyroid
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001110
name: thyrohyoid
namespace: uberon
alt_id: UBERON:FMA_13344-MA_0002393
def: "The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid_muscle]
subset: uberon_slim
synonym: "musculus thyrohyoideus" RELATED LATIN [Wikipedia:Thyrohyoid_muscle]
synonym: "thyreohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle]
synonym: "thyreohyoideus muscle" RELATED [Wikipedia:Thyrohyoid_muscle]
synonym: "thyrohyoid muscle" EXACT [Wikipedia:Thyrohyoid_muscle]
synonym: "thyrohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle]
xref: EMAPA:19273
xref: EMAPA:25143
xref: FMA:13344
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Thyrohyoid_muscle.PNG/200px-Thyrohyoid_muscle.PNG
xref: MA:0002393
xref: ncithesaurus:Thyrohyoid
xref: SCTID:244832006
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001113
name: lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13361-MA_0000360
def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes]
comment: editor note: some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts
synonym: "hepatic lobe" EXACT []
synonym: "liver lobe" EXACT []
synonym: "lobus hepatis" EXACT []
xref: EMAPA:18306
xref: FMA:13361
xref: MA:0000360
xref: ncithesaurus:Liver_Lobe
xref: SCTID:245378000
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0001114
name: right lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13362-MA_0000363
def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three foss�: the porta and the foss� for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "gall bladder lobe" RELATED SENSU [ZFA:0005173]
synonym: "liver right lobe" EXACT []
synonym: "lobus hepatis dexter" RELATED LATIN [Wikipedia:Right_lobe_of_liver]
synonym: "right liver lobe" EXACT [ZFA:0005173]
xref: EHDAA2:0001008
xref: EHDAA:4001
xref: EMAPA:18311
xref: FMA:13362
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000363
xref: ncithesaurus:Right_Lobe_of_the_Liver
xref: SCTID:362182008
xref: TAO:0005173
xref: VHOG:0001424
xref: ZFA:0005173
is_a: UBERON:0001113 ! lobe of liver

[Term]
id: UBERON:0001115
name: left lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13363-MA_0000361
def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "left liver lobe" EXACT []
synonym: "liver left lobe" EXACT []
synonym: "lobus hepatis sinister" RELATED LATIN [Wikipedia:Left_lobe_of_liver]
xref: EHDAA2:0001000
xref: EHDAA:3995
xref: EMAPA:18307
xref: FMA:13363
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000361
xref: ncithesaurus:Left_Lobe_of_the_Liver
xref: SCTID:362183003
xref: TAO:0005172
xref: VHOG:0001423
xref: ZFA:0005172
is_a: UBERON:0001113 ! lobe of liver

[Term]
id: UBERON:0001116
name: quadrate lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13364-MA_0000365
def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [Wikipedia:Quadrate_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "liver quadrate lobe" EXACT []
synonym: "lobus quadratus" EXACT []
synonym: "lobus quadratus" RELATED LATIN [Wikipedia:Quadrate_lobe_of_liver]
xref: EHDAA2:0001012
xref: EHDAA:8082
xref: EMAPA:18318
xref: FMA:13364
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000365
xref: ncithesaurus:Lobus_Quadratus
xref: SCTID:279929003
xref: VHOG:0000509
is_a: UBERON:0001114 ! right lobe of liver

[Term]
id: UBERON:0001117
name: caudate lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13365-MA_0000364
def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [Wikipedia:Caudate_lobe_of_liver]
comment: Editor/taxon notes: Check left vs right in mouse and human
subset: uberon_slim
synonym: "couinaud hepatic segment i" EXACT [FMA:13365]
synonym: "hepatovenous segment i" EXACT []
synonym: "liver caudate lobe" EXACT []
synonym: "liver caudate process" RELATED []
synonym: "lobus caudatus" EXACT []
synonym: "pars posterior hepatis" EXACT [FMA:13365, FMA:TA]
synonym: "posterior hepatic segment i" EXACT []
synonym: "posterior liver" EXACT []
synonym: "posterior part of liver" EXACT []
synonym: "segment hepatis posterius I, lobus caudatus" RELATED LATIN [Wikipedia:Caudate_lobe_of_liver]
synonym: "segment i of liver" EXACT []
synonym: "segmentum hepatis i" EXACT [FMA:13365, FMA:TA]
synonym: "spiegelian lobe" EXACT []
synonym: "spigel lobe" EXACT []
xref: EHDAA2:0001005
xref: EHDAA:6990
xref: EMAPA:18313
xref: FMA:13365
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000364
xref: ncithesaurus:Lobus_Caudatus
xref: SCTID:362184009
xref: VHOG:0000508
is_a: UBERON:0001114 {source="MA"} ! right lobe of liver
relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver

[Term]
id: UBERON:0001143
name: hepatic vein
namespace: uberon
alt_id: UBERON:FMA_14337-XAO_0000387-ZFA_0000670
def: "In human anatomy, the hepatic veins are the blood vessels that drain de-oxygenated blood from the liver and blood cleaned by the liver into the inferior vena cava. They arise from the substance of the liver, more specifically the central vein of the liver lobule. None of the hepatic veins have valves. [WP,unvetted]." [Wikipedia:Hepatic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "hepatic veins" RELATED []
synonym: "liver vein" EXACT [OBOL:automatic]
synonym: "vein of liver" EXACT [OBOL:automatic]
synonym: "vena hepatica" EXACT []
synonym: "venae hepaticae" RELATED LATIN [Wikipedia:Hepatic_vein]
xref: AAO:0010216
xref: EMAPA:19221
xref: FMA:14337
xref: GAID:534
xref: galen:HepaticVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png
xref: MESH:A.07.231.908.380
xref: ncithesaurus:Hepatic_Vein
xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA
xref: SCTID:278191001
xref: TAO:0000670
xref: XAO:0000387
xref: ZFA:0000670
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0006877 ! vasculature of liver

[Term]
id: UBERON:0001149
name: bare area of liver
namespace: uberon
alt_id: UBERON:FMA_14480-MA_0000359
comment: This class was created automatically from a combination of ontologies
synonym: "area nuda (hepar)" EXACT []
synonym: "area nuda hepatis" EXACT []
synonym: "liver bare area" EXACT []
xref: EMAPA:17945
xref: EMAPA:18308
xref: EMAPA:18312
xref: FMA:14480
xref: MA:0000359
xref: SCTID:279965008
relationship: part_of UBERON:0001114 ! right lobe of liver

[Term]
id: UBERON:0001152
name: cystic duct
namespace: uberon
alt_id: UBERON:FMA_14539-MA_0000355
def: "The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]." [Wikipedia:Cystic_duct]
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus cysticus" RELATED LATIN [Wikipedia:Cystic_duct]
xref: EHDAA2:0000333
xref: EHDAA:3045
xref: EMAPA:16841
xref: FMA:14539
xref: GAID:290
xref: galen:CysticDuct
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000355
xref: MESH:A.03.159.183.419
xref: ncithesaurus:Cystic_Duct
xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA
xref: SCTID:245398005
xref: TAO:0005166
xref: VHOG:0000213
xref: ZFA:0005166
is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct
relationship: channels_into UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0002110 ! gallbladder
relationship: develops_from UBERON:0005604 {source="EHDAA2"} ! hepatic duct extrahepatic part
relationship: part_of UBERON:0001173 {source="FMA"} ! biliary tree

[Term]
id: UBERON:0001153
name: caecum
namespace: uberon
alt_id: UBERON:FMA_14541-MA_0000334-MIAA_0000288
def: "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum]
comment: A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates.[WP]
subset: uberon_slim
synonym: "blind intestine" RELATED [BTO:0000166]
synonym: "blindgut" RELATED [BTO:0000166]
synonym: "cecum" EXACT [FMA:14541]
synonym: "intestinum caecum" RELATED [BTO:0000166]
synonym: "intestinum crassum caecum" EXACT []
synonym: "intestinum crassum cecum" RELATED [BTO:0000166]
xref: BTO:0000166
xref: EFO:0000850
xref: EHDAA2:0000206
xref: EHDAA:3913
xref: EV:0100397
xref: FMA:14541
xref: GAID:307
xref: galen:Cecum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png
xref: MA:0000334
xref: MESH:A.03.492.411.495.209
xref: MIAA:0000288
xref: ncithesaurus:Cecum
xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA
xref: SCTID:181256004
xref: VHOG:0001559
property_value: RO:0002161 NCBITaxon:32443
is_a: UBERON:0009854 ! digestive tract diverticulum
relationship: continuous_with UBERON:0001156 {source="Wikipedia"} ! ascending colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
relationship: part_of UBERON:0000059 {source="MA"} ! large intestine
relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon

[Term]
id: UBERON:0001154
name: appendix
namespace: uberon
alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287
def: "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [FMA:14542, Wikipedia:Vermiform_appendix]
subset: organ_slim
subset: uberon_slim
synonym: "apex of cecum" RELATED []
synonym: "appendix vermiformis" EXACT [FMA:14542, FMA:TA]
synonym: "appendix vermiformis" RELATED LATIN [Wikipedia:Vermiform_appendix]
synonym: "caecal appendix" EXACT []
synonym: "vermiform appendix" EXACT []
synonym: "vermix" EXACT []
xref: BTO:0000084
xref: EFO:0000849
xref: EHDAA2:0000588
xref: EV:0100076
xref: EV:0100080
xref: FMA:14542
xref: GAID:308
xref: galen:AppendixVermiformis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray536.png/200px-Gray536.png
xref: MA:0001540
xref: MAT:0000287
xref: MESH:A.03.492.411.495.209.290
xref: MIAA:0000287
xref: ncithesaurus:Vermiform_Appendix
xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA
xref: SCTID:181255000
xref: VHOG:0001306
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
relationship: part_of UBERON:0001153 {source="MA"} ! caecum
relationship: part_of UBERON:0004907 {source="FMA"} ! lower digestive tract

[Term]
id: UBERON:0001155
name: colon
namespace: uberon
alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a>" [Wikipedia:Colon_(anatomy), ZFIN:curator]
comment: TODO: abstract this such that it legitimately covers all vertebrates
subset: uberon_slim
subset: vertebrate_core
synonym: "hindgut" RELATED []
synonym: "large bowel" EXACT []
synonym: "posterior intestine" NARROW []
synonym: "posterior intestine - zebrafish" BROAD []
xref: AAO:0010400
xref: BTO:0000269
xref: EFO:0000361
xref: EHDAA2:0000779
xref: EMAPA:18939
xref: EV:0100079
xref: FMA:14543
xref: GAID:309
xref: galen:Colon
xref: MA:0000335
xref: MAP:0000001
xref: MAT:0000526
xref: MESH:A.03.492.411.495.356
xref: ncithesaurus:Colon
xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA
xref: SCTID:302508007
xref: TAO:0000706
xref: VHOG:0000648
xref: XAO:0000243
xref: ZFA:0000706
relationship: part_of UBERON:0000059 {source="FMA"} ! large intestine

[Term]
id: UBERON:0001156
name: ascending colon
namespace: uberon
alt_id: UBERON:FMA_14545-MA_0001541-MIAA_0000311
def: "Organ part which is continuous with the cecum proximally and the transverse colon distally.[FMA]" [FMA:FMA, Wikipedia:Ascending_colon]
comment: Note that in MA, this is a subclass of colon
subset: uberon_slim
synonym: "colon ascendens" RELATED LATIN [Wikipedia:Ascending_colon]
xref: BTO:0000270
xref: EFO:0000843
xref: FMA:14545
xref: galen:AscendingColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MA:0001541
xref: MAT:0000311
xref: MIAA:0000311
xref: ncithesaurus:Ascending_Colon
xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA
xref: SCTID:362162009
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001157 ! transverse colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut

[Term]
id: UBERON:0001157
name: transverse colon
namespace: uberon
alt_id: UBERON:FMA_14546-MA_0001543-MIAA_0000312
def: "The transverse colon the longest and most movable part of the colon, passes with a downward convexity from the right hypochondrium region across the abdomen, opposite the confines of the epigastric and umbilical zones, into the left hypochondrium region, where it curves sharply on itself beneath the lower end of the spleen, forming the splenic or left colic flexure. The right colic flexure is adjacent to the liver. In its course, it describes an arch, the concavity of which is directed backward and a little upward; toward its splenic end there is often an abrupt U-shaped curve which may descend lower than the main curve. It is almost completely invested by peritoneum, and is connected to the inferior border of the pancreas by a large and wide duplicature of that membrane, the transverse mesocolon. It is in relation, by its upper surface, with the liver and gall-bladder, the greater curvature of the stomach, and the lower end of the spleen; by its under surface, with the small intestine; by its anterior surface, with the anterior layers of the greater omentum and the abdominal parietes; its posterior surface is in relation from right to left with the descending portion of the duodenum, the head of the pancreas, and some of the convolutions of the jejunum and ileum. [WP,unvetted]." [Wikipedia:Transverse_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "colon transversum" RELATED LATIN [Wikipedia:Transverse_colon]
xref: BTO:0000272
xref: EFO:0000844
xref: FMA:14546
xref: galen:TransverseColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MA:0001543
xref: MAT:0000312
xref: MIAA:0000312
xref: ncithesaurus:Transverse_Colon
xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA
xref: SCTID:362163004
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001158 ! descending colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut

[Term]
id: UBERON:0001158
name: descending colon
namespace: uberon
alt_id: UBERON:FMA_14547-MA_0001542-MIAA_0000313
def: "The descending colon of humans passes downward through the left hypochondrium and lumbar regions, along the lateral border of the left kidney. At the lower end of the kidney it turns medialward toward the lateral border of the psoas muscle, and then descends, in the angle between psoas and quadratus lumborum, to the crest of the ilium, where it ends in the sigmoid colon. The peritoneum covers its anterior surface and sides, and therefore the descending colon is described as retroperitoneal. (The transverse colon and sigmoid colon, which are immediately proximal and distal, are intraperitoneal). Its posterior surface is connected by areolar tissue with the lower and lateral part of the left kidney, the aponeurotic origin of the transversus abdominis, and the quadratus lumborum. It is smaller in caliber and more deeply placed than the ascending colon. It has a mesentery in 33% of people, and is therefore more frequently covered with peritoneum on its posterior surface than the ascending colon (which has a mesentery in 25% of people). However, it is less likely to undergo volvulus than the ascending colon. In front of it are some coils of small intestine. [WP,unvetted]." [Wikipedia:Descending_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "colon descendens" RELATED LATIN [Wikipedia:Descending_colon]
xref: BTO:0000641
xref: EFO:0000845
xref: FMA:14547
xref: galen:DescendingColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray1223.png/200px-Gray1223.png
xref: MA:0001542
xref: MAT:0000313
xref: MIAA:0000313
xref: ncithesaurus:Descending_Colon
xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA
xref: SCTID:362165006
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001159 ! sigmoid colon
relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut

[Term]
id: UBERON:0001159
name: sigmoid colon
namespace: uberon
alt_id: UBERON:FMA_14548-MIAA_0000314
def: "the part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [Wikipedia:Sigmoid_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "colon sigmoideum" RELATED LATIN [Wikipedia:Sigmoid_colon]
synonym: "pelvic colon" RELATED []
synonym: "sigmoid colon" RELATED []
synonym: "sigmoid flexure" RELATED []
xref: BTO:0000645
xref: EFO:0000846
xref: FMA:14548
xref: galen:SigmoidColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MAT:0000314
xref: MESH:A.03.492.411.495.356.668
xref: MIAA:0000314
xref: ncithesaurus:Sigmoid_Colon
xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA
xref: SCTID:362166007
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001052 ! rectum
relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut

[Term]
id: UBERON:0001160
name: fundus of stomach
namespace: uberon
alt_id: UBERON:FMA_14559-MA_0001612
def: "The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]." [GO:0014825, ISBN10:0073040584, Wikipedia:Fundus_%28stomach%29]
subset: uberon_slim
synonym: "fundus gastricus" RELATED [BTO:0000502]
synonym: "fundus gastricus (ventricularis)" EXACT []
synonym: "fundus gastricus ventricularis" RELATED [BTO:0000502]
synonym: "fundus ventricularis" RELATED [BTO:0000502]
synonym: "fundus ventriculi" RELATED [BTO:0000502]
synonym: "gastric fundus" EXACT []
synonym: "stomach fundus" EXACT []
xref: BTO:0000502
xref: EFO:0002554
xref: EHDAA2:0001919
xref: EHDAA:4844
xref: FMA:14559
xref: GAID:320
xref: galen:GastricFundus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001612
xref: MESH:A.03.492.766.419
xref: ncithesaurus:Fundus_of_the_Stomach
xref: SCTID:362139007
xref: VHOG:0000421
is_a: UBERON:0009870 ! zone of stomach
relationship: has_part UBERON:0010038 ! fundic gastric gland

[Term]
id: UBERON:0001161
name: body of stomach
namespace: uberon
alt_id: UBERON:FMA_14560-MA_0002559
def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach]
comment: Note that we include this as zone of stomach even though it is not distinguished by gland type
subset: uberon_slim
synonym: "corpus gastricum" RELATED LATIN [Wikipedia:Body_of_stomach]
synonym: "corpus gastricum" RELATED [BTO:0000505]
synonym: "corpus gastricum (ventriculare)" EXACT []
synonym: "corpus ventriculare" RELATED [BTO:0000505]
synonym: "corpus ventriculi" RELATED [BTO:0000505]
synonym: "gastric body" EXACT []
synonym: "gastric corpus" RELATED []
synonym: "stomach body" EXACT []
xref: BTO:0000505
xref: FMA:14560
xref: galen:GastricCorpus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002559
xref: ncithesaurus:Body_of_Stomach
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach

[Term]
id: UBERON:0001162
name: cardia of stomach
namespace: uberon
alt_id: UBERON:0004712
alt_id: UBERON:FMA_14561-MA_0001609
def: "The opening of the esophagus into the stomach; also: the part of the stomach adjoining this opening[BTO]. The cardia is the anatomical term for the part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]" [BTO:0000198, Wikipedia:Cardia]
comment: Editor notes: We follow Kardong in defining stomach regions by glands. Boundary notes: There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that "The gastric cardia is now clearly considered to be part of the stomach"[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP].
synonym: "antrum cardiacum" RELATED [Wikipedia:Cardia]
synonym: "cardiac orifice" RELATED [Wikipedia:Cardia]
synonym: "cardiac region" RELATED [Wikipedia:Cardia]
synonym: "cardiac sphincter" RELATED [Wikipedia:Cardia]
synonym: "cardial orifice" RELATED [Wikipedia:Cardia]
synonym: "cardial part of stomach" EXACT []
synonym: "esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "esophageal sphincter%2c lower" RELATED [Wikipedia:Cardia]
synonym: "esophageal-cardiac junction" RELATED [Wikipedia:Cardia]
synonym: "esophagogastric junction" RELATED [Wikipedia:Cardia]
synonym: "gastric cardia" EXACT []
synonym: "gastro-esophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastro-esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "gastro-oesophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastroesophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastroesophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "lower esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "pars cardiaca (gaster)" EXACT []
synonym: "pars cardiaca gastricae" EXACT [FMA:14561, FMA:TA]
synonym: "stomach cardiac region" EXACT [MA:0001609]
xref: BTO:0000198
xref: FMA:14561
xref: GAID:319
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Illu_stomach.jpg/200px-Illu_stomach.jpg
xref: MA:0001609
xref: MESH:A.03.492.766.163
xref: ncithesaurus:Cardia
is_a: UBERON:0009870 ! zone of stomach
intersection_of: UBERON:0009870 ! zone of stomach
intersection_of: has_part UBERON:0008859 ! cardiac gastric gland
relationship: continuous_with UBERON:0001043 ! esophagus
relationship: continuous_with UBERON:0001161 ! body of stomach
relationship: has_part UBERON:0008859 ! cardiac gastric gland

[Term]
id: UBERON:0001163
name: lesser curvature of stomach
namespace: uberon
alt_id: UBERON:FMA_14572-MA_0001616
def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [Wikipedia:Lesser_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach lesser curvature" EXACT []
xref: FMA:14572
xref: galen:LesserCurvatureOfStomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001616
xref: ncithesaurus:Lesser_Curvature
xref: SCTID:362133008
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach

[Term]
id: UBERON:0001164
name: greater curvature of stomach
namespace: uberon
alt_id: UBERON:FMA_14574-MA_0001615
def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [Wikipedia:Greater_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach greater curvature" EXACT []
xref: FMA:14574
xref: galen:GreaterCurvatureOfStomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001615
xref: ncithesaurus:Greater_Curvature
xref: SCTID:362134002
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach

[Term]
id: UBERON:0001165
name: pyloric antrum
namespace: uberon
alt_id: UBERON:FMA_14579-MA_0001624
def: "Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]." [Wikipedia:Pyloric_antrum]
subset: uberon_slim
synonym: "antrum of stomach" EXACT []
synonym: "antrum of Willis" RELATED [BTO:0001732]
synonym: "antrum pylori" RELATED [BTO:0001732]
synonym: "antrum pyloricum" RELATED LATIN [Wikipedia:Pyloric_antrum]
synonym: "antrum pyloricum" RELATED [BTO:0001732]
synonym: "gastric antrum" RELATED [BTO:0001732]
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
xref: BTO:0001732
xref: EFO:0002555
xref: EMAPA:17891
xref: EMAPA:18919
xref: FMA:14579
xref: GAID:332
xref: galen:PyloricAntrum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001624
xref: MESH:A.03.492.766.716
xref: ncithesaurus:Antrum_Pylori
xref: SCTID:362142001
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
relationship: continuous_with UBERON:0001161 ! body of stomach
relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus

[Term]
id: UBERON:0001166
name: pylorus
namespace: uberon
alt_id: UBERON:FMA_14581-MA_0002560
def: "The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]." [Wikipedia:Pylorus]
comment: Editor notes: We follow Kardong in defining stomach regions by glands
subset: uberon_slim
synonym: "pars pylorica gastricae" EXACT [FMA:14581, FMA:TA]
synonym: "pyloric part of stomach" EXACT []
synonym: "pyloric region" EXACT []
synonym: "stomach pyloric region" EXACT [EHDAA2:0001580]
synonym: "valvula pylori" RELATED LATIN [Wikipedia:Pylorus]
xref: BTO:0001146
xref: EHDAA2:0001580
xref: EHDAA:4860
xref: EMAPA:17631
xref: EMAPA:18915
xref: FMA:14581
xref: GAID:333
xref: galen:Pylorus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002560
xref: MESH:A.03.492.766.799
xref: ncithesaurus:Pylorus
xref: SCTID:362143006
xref: VHOG:0000420
is_a: UBERON:0009870 ! zone of stomach
intersection_of: UBERON:0009870 ! zone of stomach
intersection_of: has_part UBERON:0001165 ! pyloric antrum
intersection_of: has_part UBERON:0008858 ! pyloric canal
intersection_of: has_part UBERON:0008861 ! pyloric gastric gland
relationship: has_part UBERON:0001165 ! pyloric antrum
relationship: has_part UBERON:0008858 ! pyloric canal
relationship: has_part UBERON:0008861 ! pyloric gastric gland

[Term]
id: UBERON:0001167
name: wall of stomach
namespace: uberon
alt_id: UBERON:FMA_14582-MA_0002692
def: "An anatomical wall that is part of a stomach [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric wall" EXACT []
synonym: "stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "stomach wall" EXACT []
synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "ventriculus wall" EXACT [OBOL:automatic]
synonym: "wall of ventriculus" EXACT [OBOL:automatic]
xref: FMA:14582
xref: galen:WallOfStomach
xref: MA:0002692
xref: SCTID:279995000
relationship: part_of UBERON:0000945 ! stomach

[Term]
id: UBERON:0001168
name: wall of small intestine
namespace: uberon
alt_id: UBERON:FMA_14615-MA_0002696
def: "An anatomical wall that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "small bowel wall" EXACT [OBOL:automatic]
synonym: "small intestinal wall" EXACT []
synonym: "small intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "small intestine wall" EXACT []
synonym: "wall of small bowel" EXACT [OBOL:automatic]
xref: FMA:14615
xref: MA:0002696
is_a: UBERON:0001262 ! wall of intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001169
name: wall of large intestine
namespace: uberon
alt_id: UBERON:FMA_14619-MA_0002695
def: "An anatomical wall that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal wall" EXACT []
synonym: "large intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "large intestine wall" EXACT []
xref: FMA:14619
xref: MA:0002695
is_a: UBERON:0001262 ! wall of intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001262 ! wall of intestine

[Term]
id: UBERON:0001170
name: mesentery of small intestine
namespace: uberon
alt_id: UBERON:FMA_14643-MA_0001555
def: "the peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]." [Wikipedia:Mesentery#Mesentery_.28proper.29]
synonym: "mesentery (proper)" EXACT [Wikipedia:Mesentery]
synonym: "mesentery proper" EXACT [FMA:14643]
synonym: "small intestinal mesentery" EXACT [FMA:14643]
synonym: "small intestine mesentery" EXACT [Obol:automatic]
xref: FMA:14643
xref: MA:0001555
xref: SCTID:245456008
is_a: UBERON:0001206 ! serosa of small intestine
is_a: UBERON:0004854 ! gastrointestinal system mesentery
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001171
name: portal lobule
namespace: uberon
alt_id: UBERON:FMA_14653-MA_0002498
def: "the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992]
comment: This class was created automatically from a combination of ontologies
xref: FMA:14653
xref: MA:0002498
xref: ncithesaurus:Portal_Lobule
relationship: part_of UBERON:0001280 ! liver parenchyma

[Term]
id: UBERON:0001172
name: hepatic acinus
namespace: uberon
alt_id: UBERON:FMA_14654-MA_0002496
comment: This class was created automatically from a combination of ontologies
synonym: "liver acinus" EXACT []
synonym: "portal acinus" EXACT []
xref: FMA:14654
xref: MA:0002496
xref: ncithesaurus:Liver_Acinus
xref: SCTID:272214009
relationship: part_of UBERON:0001171 ! portal lobule
relationship: part_of UBERON:0004647 ! liver lobule

[Term]
id: UBERON:0001173
name: biliary tree
namespace: uberon
alt_id: UBERON:FMA_14665-XAO_0000455
def: "Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract]
subset: organ_slim
subset: uberon_slim
synonym: "biliary tract" EXACT []
xref: AAO:0011020
xref: FMA:14665
xref: GAID:279
xref: MA:0001273
xref: MESH:A.03.159
xref: ncithesaurus:Biliary_Tract
xref: SCTID:181267003
xref: XAO:0000455
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: part_of UBERON:0002294 ! biliary system

[Term]
id: UBERON:0001174
name: common bile duct
namespace: uberon
alt_id: UBERON:FMA_14667-MA_0001631
def: "a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct]
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus choledochus" RELATED LATIN [Wikipedia:Common_bile_duct]
synonym: "ductus choledochus (biliaris)" EXACT []
xref: EHDAA2:0000303
xref: EHDAA:3981
xref: EMAPA:17201
xref: FMA:14667
xref: GAID:282
xref: galen:CommonBileDuct
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0001631
xref: MESH:A.03.159.183.079.300
xref: ncithesaurus:Common_Bile_Duct
xref: SCTID:362199009
xref: TAO:0005165
xref: VHOG:0000214
xref: ZFA:0005165
is_a: UBERON:0003703 ! extrahepatic bile duct
relationship: channels_into UBERON:0001064 ! ventral pancreatic duct
relationship: continuous_with UBERON:0001152 ! cystic duct
relationship: continuous_with UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0001173 ! biliary tree

[Term]
id: UBERON:0001175
name: common hepatic duct
namespace: uberon
alt_id: UBERON:FMA_14668-ZFA_0001100
def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part
subset: uberon_slim
synonym: "ductus hepaticus communis" RELATED LATIN [Wikipedia:Common_hepatic_duct]
synonym: "hepatic duct" RELATED []
xref: EMAPA:19101
xref: FMA:14668
xref: GAID:286
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_liver_gallbladder.jpg/200px-Illu_liver_gallbladder.jpg
xref: MA:0002660
xref: MESH:A.03.159.183.079.600
xref: ncithesaurus:Common_Hepatic_Duct
xref: SCTID:245403006
xref: VHOG:0000220
is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct
relationship: channels_into UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0001176 {source="Wikipedia"} ! right hepatic duct
relationship: continuous_with UBERON:0001177 {source="Wikipedia"} ! left hepatic duct
relationship: develops_from UBERON:0010081 {evidence="definitional"} ! future common hepatic duct
relationship: part_of UBERON:0005604 {source="MA"} ! hepatic duct extrahepatic part

[Term]
id: UBERON:0001176
name: right hepatic duct
namespace: uberon
alt_id: UBERON:FMA_14669-MA_0001639
def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034]
comment: This class was created automatically from a combination of ontologies
xref: EHDAA2:0001727
xref: EHDAA:3992
xref: EMAPA:18305
xref: EMAPA:19100
xref: FMA:14669
xref: MA:0001639
xref: ncithesaurus:Right_Hepatic_Duct
xref: SCTID:245401008
xref: VHOG:0000217
is_a: UBERON:0003703 ! extrahepatic bile duct
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: continuous_with UBERON:0001114 ! right lobe of liver
relationship: continuous_with UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0001177
name: left hepatic duct
namespace: uberon
alt_id: UBERON:FMA_14670-MA_0001638
def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035]
xref: EHDAA2:0000941
xref: EHDAA:3990
xref: EMAPA:18304
xref: EMAPA:19099
xref: FMA:14670
xref: MA:0001638
xref: ncithesaurus:Left_Hepatic_Duct
xref: SCTID:245400009
xref: VHOG:0000218
is_a: UBERON:0003703 ! extrahepatic bile duct
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: continuous_with UBERON:0001115 ! left lobe of liver
relationship: continuous_with UBERON:0001115 ! left lobe of liver
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0001193
name: hepatic artery
namespace: uberon
alt_id: UBERON:FMA_14769-MA_0001963
def: "." [Wikipedia:Hepatic_artery_proper]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: BTO:0004307
xref: EMAPA:17859
xref: FMA:14769
xref: GAID:496
xref: galen:HepaticArtery
xref: MA:0001963
xref: MESH:A.07.231.114.407
xref: ncithesaurus:Hepatic_Artery
xref: OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA
xref: SCTID:76015000
xref: TAO:0005161
xref: ZFA:0005161
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0001199
name: mucosa of stomach
namespace: uberon
alt_id: UBERON:FMA_14907-MA_0002683
def: "The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]." [Wikipedia:Gastric_mucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gastric mucosa" EXACT []
synonym: "gastric mucous membrane" EXACT []
synonym: "Magenschleimhaut" RELATED [BTO:0001308]
synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic]
synonym: "mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach" EXACT []
synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach mucosa" EXACT []
synonym: "stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (gaster)" EXACT []
synonym: "tunica mucosa gastricae" EXACT [FMA:14907, FMA:TA]
synonym: "tunica mucosa gastris" RELATED LATIN [Wikipedia:Gastric_mucosa]
synonym: "tunica mucosa gastris" RELATED [BTO:0001308]
synonym: "ventriculus mucosa" EXACT [OBOL:automatic]
synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic]
synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic]
synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic]
xref: BTO:0001308
xref: FMA:14907
xref: GAID:321
xref: galen:GastricMucosa
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_stomach2.jpg/200px-Illu_stomach2.jpg
xref: MA:0002683
xref: MESH:A.03.492.766.440
xref: ncithesaurus:Gastric_Mucosa
xref: OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA
xref: SCTID:362131005
is_a: UBERON:0004786 ! gastrointestinal system mucosa
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach

[Term]
id: UBERON:0001200
name: submucosa of stomach
namespace: uberon
alt_id: UBERON:FMA_14908-MA_0002685
def: "A submucosa that is part of a stomach [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "gastric submucosa" EXACT []
synonym: "stomach submucosa" EXACT []
synonym: "submucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "tela submucosa (gaster)" EXACT []
synonym: "ventriculus submucosa" EXACT [OBOL:automatic]
xref: BTO:0002110
xref: FMA:14908
xref: MA:0002685
xref: ncithesaurus:Gastric_Submucosa
xref: SCTID:52459002
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach

[Term]
id: UBERON:0001201
name: serosa of stomach
namespace: uberon
alt_id: UBERON:FMA_14914-MA_0001626
def: "A serous membrane that is part of a wall of stomach [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus serous membrane" EXACT [OBOL:automatic]
synonym: "gastric serosa" RELATED []
synonym: "gastric wall serosa" EXACT [OBOL:automatic]
synonym: "gastric wall serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serosa of gastric wall" EXACT [OBOL:automatic]
synonym: "serosa of stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of stomach wall" EXACT [OBOL:automatic]
synonym: "serosa of ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of ventriculus wall" EXACT [OBOL:automatic]
synonym: "serosa of wall of stomach" EXACT [OBOL:automatic]
synonym: "serosa of wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serous coat of stomach" EXACT []
synonym: "serous membrane of anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serous membrane of gastric wall" EXACT [OBOL:automatic]
synonym: "serous membrane of stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of stomach wall" EXACT [OBOL:automatic]
synonym: "serous membrane of ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of ventriculus wall" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of stomach" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "stomach anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "stomach serosa" EXACT []
synonym: "stomach wall serosa" EXACT [OBOL:automatic]
synonym: "stomach wall serous membrane" EXACT [OBOL:automatic]
synonym: "tunica serosa (gaster)" EXACT []
synonym: "tunica serosa gastricae" EXACT [FMA:14914, FMA:TA]
synonym: "ventriculus anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "ventriculus anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "ventriculus wall serosa" EXACT [OBOL:automatic]
synonym: "ventriculus wall serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of stomach" EXACT []
synonym: "wall of stomach serosa" EXACT [OBOL:automatic]
synonym: "wall of stomach serous membrane" EXACT [OBOL:automatic]
synonym: "wall of ventriculus serosa" EXACT [OBOL:automatic]
synonym: "wall of ventriculus serous membrane" EXACT [OBOL:automatic]
xref: FMA:14914
xref: MA:0001626
xref: SCTID:1353004
is_a: UBERON:0004782 ! gastrointestinal system serosa
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0001167 ! wall of stomach

[Term]
id: UBERON:0001202
name: pyloric sphincter
namespace: uberon
alt_id: UBERON:FMA_14916-XAO_0000457
def: "A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]." [UBERON:cjm]
subset: uberon_slim
synonym: "pyloric valve" EXACT [Wikipedia:Pylorus]
xref: AAO:0011093
xref: EMAPA:19251
xref: FMA:14916
xref: MA:0002952
xref: ncithesaurus:Pyloric_Sphincter
xref: OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA
xref: SCTID:268073008
xref: VHOG:0001466
xref: XAO:0000457
relationship: adjacent_to UBERON:0002114 ! duodenum
relationship: continuous_with UBERON:0008858 ! pyloric canal
relationship: part_of UBERON:0001166 ! pylorus

[Term]
id: UBERON:0001203
name: muscularis mucosae of stomach
namespace: uberon
alt_id: UBERON:FMA_14924-MA_0002684
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT []
synonym: "lamina muscularis of gastric mucosa" EXACT []
synonym: "muscular coat of stomach" EXACT []
synonym: "stomach muscularis mucosa" EXACT []
synonym: "tunica muscularis gastricae" EXACT [FMA:14924, FMA:TA]
xref: FMA:14924
xref: MA:0002684
xref: SCTID:64551004
is_a: UBERON:0004222 ! stomach smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach

[Term]
id: UBERON:0001204
name: mucosa of small intestine
namespace: uberon
alt_id: UBERON:FMA_14933-MA_0002686
def: "A mucosa that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic]
synonym: "mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small intestine" EXACT []
synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel mucosa" EXACT [OBOL:automatic]
synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "small bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "small bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "small intestinal mucosa" EXACT []
synonym: "small intestine mucosa" EXACT []
synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "small intestine mucous membrane" EXACT []
synonym: "small intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (intestinum tenue)" EXACT []
synonym: "tunica mucosa intestini tenuis" EXACT [FMA:14933, FMA:TA]
xref: BTO:0001259
xref: FMA:14933
xref: MA:0002686
xref: ncithesaurus:Small_Intestinal_Mucosa
xref: SCTID:362144000
is_a: UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001205
name: submucosa of small intestine
namespace: uberon
alt_id: UBERON:FMA_14934-MA_0001562
def: "." [Wikipedia:Small_intestinal_submucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "small bowel submucosa" EXACT [OBOL:automatic]
synonym: "small intestinal submucosa" EXACT []
synonym: "small intestine submucosa" EXACT []
synonym: "submucosa of small bowel" EXACT [OBOL:automatic]
synonym: "tela submucosa (intestinum tenue)" EXACT []
xref: FMA:14934
xref: MA:0001562
xref: ncithesaurus:Small_Intestinal_Submucosa
xref: SCTID:691000
is_a: UBERON:0009566 ! intestinal submucosa
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001206
name: serosa of small intestine
namespace: uberon
alt_id: UBERON:FMA_14938-MA_0001558
def: "A serous membrane that is part of a small intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "serosa of small bowel" EXACT [OBOL:automatic]
synonym: "serous coat of small intestine" EXACT []
synonym: "serous membrane of small bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel serosa" EXACT [OBOL:automatic]
synonym: "small bowel serous membrane" EXACT [OBOL:automatic]
synonym: "small intestinal serosa" EXACT []
synonym: "small intestine serosa" EXACT []
synonym: "small intestine serous membrane" EXACT [OBOL:automatic]
synonym: "tunica serosa (intestinum tenue)" EXACT []
synonym: "tunica serosa intestini tenuis" EXACT [FMA:14938, FMA:TA]
synonym: "visceral peritoneum of small intestine" EXACT []
xref: FMA:14938
xref: MA:0001558
xref: SCTID:8266009
is_a: UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001207
name: mucosa of large intestine
namespace: uberon
alt_id: UBERON:FMA_14969-MA_0002688
def: "A mucosa that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "large intestinal mucosa" EXACT []
synonym: "large intestine mucosa" EXACT []
synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "large intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "large intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of large intestine" EXACT []
synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic]
synonym: "tunica mucosa intestini crassi" EXACT [FMA:14969, FMA:TA]
xref: FMA:14969
xref: MA:0002688
xref: ncithesaurus:Large_Intestinal_Mucosa
is_a: UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa

[Term]
id: UBERON:0001208
name: submucosa of large intestine
namespace: uberon
alt_id: UBERON:FMA_14970-MA_0002690
def: "A submucosa that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "large intestinal submucosa" EXACT []
synonym: "large intestine submucosa" EXACT []
xref: BTO:0002111
xref: FMA:14970
xref: MA:0002690
xref: ncithesaurus:Large_Intestinal_Submucosa
is_a: UBERON:0009566 ! intestinal submucosa
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine

[Term]
id: UBERON:0001209
name: serosa of large intestine
namespace: uberon
alt_id: UBERON:FMA_14975-MA_0001546
def: "A serous membrane that is part of a large intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "large intestinal serosa" EXACT []
synonym: "large intestine serosa" EXACT []
synonym: "large intestine serous membrane" EXACT [OBOL:automatic]
synonym: "serous coat of large intestine" EXACT []
synonym: "serous membrane of large intestine" EXACT [OBOL:automatic]
synonym: "tunica serosa intestini crassi" EXACT [FMA:14975, FMA:TA]
synonym: "visceral peritoneum of large intestine" EXACT []
xref: FMA:14975
xref: MA:0001546
is_a: UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
relationship: part_of UBERON:0001243 ! serosa of intestine

[Term]
id: UBERON:0001210
name: muscularis mucosae of small intestine
namespace: uberon
alt_id: UBERON:FMA_15051-MA_0002687
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT []
synonym: "lamina muscularis of small intestine mucous membrane" EXACT []
synonym: "small intestine muscularis mucosa" EXACT []
xref: FMA:15051
xref: MA:0002687
xref: ncithesaurus:Small_Intestinal_Muscularis_Mucosa
xref: SCTID:36401004
is_a: UBERON:0001240 ! muscularis mucosae of intestine
is_a: UBERON:0004239 ! small intestine smooth muscle
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001211
name: Peyer's patch
namespace: uberon
alt_id: UBERON:FMA_15054-MA_0000137
def: "aggregations of lymphoid tissue that are usually found in the lowest portion of the small intestine ileum in humans; as such, they differentiate the ileum from the duodenum and jejunum // nodular lymphoid structures on the serosal surface of the small intestine." [Wikipedia:Peyer's_patch]
comment: AO notes: FMA has [set of?] [aggregated,small] lymphoid [follice,nodule] of [colon, SI, I, etc] - Pp is a syn for Aggregated lymphoid follicle of small intestine; but MA uses Pp as covering both SI and LI. MA also includes follicle as a part
subset: uberon_slim
synonym: "aggregated lymphoid follicle of intestine" RELATED []
synonym: "aggregated lymphoid nodule" RELATED []
synonym: "noduli lymphoidei aggregati intestini tenuis" EXACT [FMA:76466, FMA:TA]
xref: BTO:0001784
xref: EFO:0001381
xref: EMAPA:19028
xref: GAID:950
xref: MA:0000137
xref: MESH:A.10.549.598
xref: ncithesaurus:Mouse_Peyer_s_Patches
is_a: UBERON:0001962 ! gut-associated lymphoid tissue
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0001212
name: duodenal gland
namespace: uberon
alt_id: UBERON:FMA_15060-MA_0001551
def: "compound tubular submucosal glands found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]." [Wikipedia:Brunner's_glands]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "Brunner's gland" EXACT [FMA:15060]
synonym: "gland of Brunner" EXACT [FMA:15060]
synonym: "glandula duodenales" RELATED [BTO:0002376]
synonym: "glandula duodenales Brunneri" RELATED [BTO:0002376]
xref: BTO:0002376
xref: FMA:15060
xref: GAID:314
xref: MA:0001551
xref: MESH:A.03.492.411.620.270.322
xref: ncithesaurus:Brunner_s_Gland
xref: SCTID:41298001
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0003332 {source="FMA"} ! submucosa of duodenum

[Term]
id: UBERON:0001213
name: intestinal villus
namespace: uberon
alt_id: UBERON:0007607
alt_id: UBERON:FMA_15072-ZFA_0005125
def: "Tiny, finger-like projections that protrude from the epithelial lining of the intestinal wall[WP]" [Wikipedia:Intestinal_villus]
comment: Editor notes: we assume the MA class belongs here as the intestinal villi are part of the small intestine. This may need checked for ZFA. Note the BTO class refers to a generic villous
subset: uberon_slim
subset: vertebrate_core
synonym: "enteric villi" EXACT PLURAL [HP:0011473]
synonym: "enteric villous" EXACT [HP:0011473]
synonym: "enteric villus" EXACT [HP:0011473]
synonym: "intestinal villi" EXACT PLURAL [ZFA:0005125]
synonym: "small intestine villus" EXACT [MA:0001563]
synonym: "villi intestinales" EXACT PLURAL []
synonym: "villi intestinales" RELATED LATIN [Wikipedia:Intestinal_villus]
synonym: "villus" EXACT [BTO:0003121]
synonym: "villus intestinalis (intestinum tenue)" EXACT [FMA:15072]
xref: BTO:0003121
xref: FMA:15072
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg
xref: MA:0001563
xref: ncithesaurus:Villus
xref: SCTID:23230007
xref: TAO:0005125
xref: ZFA:0005125
relationship: part_of UBERON:0001204 {source="FMA"} ! mucosa of small intestine
relationship: part_of UBERON:0001242 {source="FMA"} ! intestinal mucosa
relationship: part_of UBERON:0001277 {source="ZFA"} ! intestinal epithelium

[Term]
id: UBERON:0001238
name: lamina propria of small intestine
namespace: uberon
alt_id: UBERON:FMA_15651-MA_0001554
def: "Lamina propria that is part_of the small intestine." [GOC:Obol]
synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of small intestine" EXACT []
synonym: "lamina propria of mucosa of small intestine" EXACT []
synonym: "lamina propria of small bowel" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "small intestine lamina propria" EXACT []
synonym: "small intestine lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "small intestine lamina propria mucosae" EXACT [OBOL:automatic]
xref: FMA:15651
xref: MA:0001554
xref: ncithesaurus:Small_Intestinal_Lamina_Propria
xref: SCTID:63588008
is_a: UBERON:0004780 ! gastrointestinal system lamina propria
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001239
name: muscularis mucosae of large intestine
namespace: uberon
alt_id: UBERON:FMA_15655-MA_0002689
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis of large intestine mucosa" EXACT []
synonym: "lamina muscularis of large intestine mucous membrane" EXACT []
synonym: "large intestine muscularis mucosa" EXACT []
xref: FMA:15655
xref: MA:0002689
xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa
is_a: UBERON:0001240 ! muscularis mucosae of intestine
is_a: UBERON:0004220 ! large intestine smooth muscle
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine

[Term]
id: UBERON:0001240
name: muscularis mucosae of intestine
namespace: uberon
alt_id: UBERON:FMA_15691-MA_0002694
comment: This class was created automatically from a combination of ontologies
synonym: "intestine muscularis mucosa" EXACT []
xref: FMA:15691
xref: MA:0002694
is_a: UBERON:0004221 ! intestine smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa

[Term]
id: UBERON:0001241
name: crypt of Lieberkuhn of small intestine
namespace: uberon
alt_id: UBERON:FMA_15693-MA_0001552
def: "A crypt of lieberkuhn that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "crypt of lieberkuhn of small bowel" EXACT [OBOL:automatic]
synonym: "crypt of lieberkuhn of small intestine" EXACT [OBOL:automatic]
synonym: "intestinal gland of small bowel" EXACT [OBOL:automatic]
synonym: "intestinal gland of small intestine" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of small bowel" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel crypt of lieberkuhn" EXACT [OBOL:automatic]
synonym: "small bowel intestinal gland" EXACT [OBOL:automatic]
synonym: "small bowel lieberkuhn crypt" EXACT [OBOL:automatic]
synonym: "small intestinal crypt of Lieberkuhn" EXACT []
synonym: "small intestine crypt of Lieberkuhn" EXACT []
synonym: "small intestine crypt of lieberkuhn" EXACT [OBOL:automatic]
synonym: "small intestine intestinal gland" EXACT [OBOL:automatic]
synonym: "small intestine lieberkuhn crypt" EXACT [OBOL:automatic]
xref: FMA:15693
xref: MA:0001552
xref: ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001242
name: intestinal mucosa
namespace: uberon
alt_id: UBERON:FMA_15695-MA_0001537
def: "The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369]
subset: uberon_slim
synonym: "bowel mucosa" EXACT [OBOL:automatic]
synonym: "bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "intestine mucosa" EXACT []
synonym: "intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of intestine" EXACT []
synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestine" EXACT [OBOL:automatic]
synonym: "organ mucosa of bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestine" EXACT [OBOL:automatic]
xref: BTO:0000642
xref: FMA:15695
xref: GAID:296
xref: MA:0001537
xref: MESH:A.03.492.411.369
xref: ncithesaurus:Intestinal_Mucosa
xref: SCTID:362080002
is_a: UBERON:0004786 ! gastrointestinal system mucosa
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine

[Term]
id: UBERON:0001243
name: serosa of intestine
namespace: uberon
alt_id: UBERON:FMA_15701-MA_0001538
def: "A serous membrane that is part of a wall of intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine serous membrane" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "bowel wall serosa" EXACT [OBOL:automatic]
synonym: "bowel wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestinal serosa" EXACT []
synonym: "intestinal wall serosa" EXACT [OBOL:automatic]
synonym: "intestinal wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestine anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "intestine anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestine serosa" EXACT []
synonym: "intestine wall serosa" EXACT [OBOL:automatic]
synonym: "intestine wall serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "serosa of bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of bowel wall" EXACT [OBOL:automatic]
synonym: "serosa of intestinal wall" EXACT [OBOL:automatic]
synonym: "serosa of intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of intestine wall" EXACT [OBOL:automatic]
synonym: "serosa of wall of bowel" EXACT [OBOL:automatic]
synonym: "serosa of wall of intestine" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "serous membrane of bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of bowel wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestinal wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestine wall" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of intestine" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of intestine" EXACT []
synonym: "wall of bowel serosa" EXACT [OBOL:automatic]
synonym: "wall of bowel serous membrane" EXACT [OBOL:automatic]
synonym: "wall of intestine serosa" EXACT [OBOL:automatic]
synonym: "wall of intestine serous membrane" EXACT [OBOL:automatic]
xref: FMA:15701
xref: MA:0001538
is_a: UBERON:0004782 ! gastrointestinal system serosa
relationship: part_of UBERON:0001262 ! wall of intestine

[Term]
id: UBERON:0001244
name: internal anal sphincter
namespace: uberon
alt_id: UBERON:FMA_15710-MA_0001534
def: "The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]." [Wikipedia:Internal_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circular layer of anal muscularis externa" EXACT []
synonym: "circular layer of muscularis externa of anal canal" EXACT []
synonym: "circular layer of muscularis propria of anal canal" EXACT []
synonym: "circular muscle layer of anal canal" EXACT []
xref: EMAPA:18266
xref: FMA:15710
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray1079.png/200px-Gray1079.png
xref: MA:0001534
xref: ncithesaurus:Internal_Anal_Sphincter
is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle
is_a: UBERON:0004916 ! anal sphincter
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0001245
name: anus
namespace: uberon
alt_id: UBERON:FMA_15711-MA_0000331-ZFA_0000066
def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator]
comment: Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html
subset: uberon_slim
synonym: "anal orifice" EXACT []
synonym: "proctodeum" RELATED []
xref: BTO:0001680
xref: EV:0100082
xref: FBbt:00001893
xref: FBbt:00003148
xref: FMA:15711
xref: GAID:312
xref: galen:Anus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0000331
xref: MESH:A.03.492.411.495.767.288
xref: ncithesaurus:Anus
xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA
xref: SCTID:181262009
xref: TADS:0000066
xref: TGMA:0001279
xref: WBbt:0005364
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0001246
name: interlobular bile duct
namespace: uberon
alt_id: UBERON:FMA_15767-MA_0002668
def: "the canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15767
xref: MA:0002668
xref: ncithesaurus:Interlobular_Bile_Duct
xref: SCTID:83488001
is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct
relationship: part_of UBERON:0001279 {source="FMA"} ! portal triad

[Term]
id: UBERON:0001247
name: falciform ligament
namespace: uberon
alt_id: UBERON:FMA_15823-MA_0001622
def: "a ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [Wikipedia:Falciform_ligament]
comment: In FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament
subset: uberon_slim
synonym: "falciform ligament of liver" EXACT []
synonym: "ligamentum falciforme (hepatis)" EXACT []
synonym: "ligamentum falciforme hepatis" EXACT [FMA:15823, FMA:TA]
xref: EHDAA2:0000499
xref: EHDAA:4856
xref: EMAPA:18288
xref: EMAPA:18908
xref: FMA:15823
xref: MA:0001622
xref: ncithesaurus:Falciform_Ligament
xref: SCTID:362705001
xref: VHOG:0000355
is_a: UBERON:0003281 ! mesentery of stomach
relationship: attaches_to UBERON:0002107 ! liver
relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium

[Term]
id: UBERON:0001248
name: hilum of spleen
namespace: uberon
alt_id: UBERON:FMA_15841-MA_0002670
def: "The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [Wikipedia:Splenic_hilum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hilum lienale" EXACT [FMA:15841, FMA:TA]
synonym: "hilum splenicum" EXACT [FMA:15841, FMA:TA]
synonym: "hilum splenicum" RELATED LATIN [Wikipedia:Splenic_hilum]
synonym: "spleen hilum" EXACT []
synonym: "splenic hilum" EXACT []
xref: EMAPA:19303
xref: FMA:15841
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png
xref: MA:0002670
xref: ncithesaurus:Splenic_Hilum
xref: SCTID:245377005
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0001249
name: spleen lymphoid follicle
namespace: uberon
alt_id: UBERON:0003969
def: "the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur" [CL:tm, https://github.com/cmungall/uberon/issues/6, MP:0008470]
synonym: "lymphatic follicle of spleen" EXACT [FMA:15843]
synonym: "lymphoid follicle of spleen" EXACT [FMA:15843]
synonym: "lymphoid nodule of spleen" EXACT [FMA:15843]
synonym: "Malpighian body" EXACT [FMA:15843]
synonym: "spleen B cell follicle" EXACT [CL:tm]
synonym: "spleen lymphoid follicle" EXACT [MA:0002672]
synonym: "spleen lymphoid nodule" RELATED [MA:0002672]
synonym: "splenic B cell follicle" EXACT [CL:tm]
synonym: "splenic lymphatic follicle" EXACT [FMA:15843]
synonym: "splenic lymphoid follicle" EXACT []
xref: MA:0002672
xref: ncithesaurus:Splenic_Lymphoid_Follicle
xref: SCTID:35845000
relationship: part_of UBERON:0001959 {source="CL:tm", source="MA"} ! white pulp of spleen
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen

[Term]
id: UBERON:0001250
name: red pulp of spleen
namespace: uberon
alt_id: UBERON:FMA_15844-MA_0000756
def: "Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma." [Wikipedia:Red_pulp]
subset: uberon_slim
synonym: "pulpa rubra" EXACT [FMA:15844, FMA:TA]
synonym: "pulpa splenica" RELATED LATIN [Wikipedia:Red_pulp]
synonym: "red pulp" EXACT []
synonym: "spleen red pulp" EXACT []
synonym: "splenic red pulp" EXACT []
xref: FMA:15844
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000756
xref: ncithesaurus:Splenic_Red_Pulp
xref: SCTID:27579002
is_a: UBERON:1000023 ! spleen pulp

[Term]
id: UBERON:0001251
name: marginal zone of spleen
namespace: uberon
alt_id: UBERON:FMA_15852-MA_0000755
def: "region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen." [Wikipedia:Marginal_zone]
comment: WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line. Not to be confused with: Marginal zone of spleen (e.g. AAO:0010448 marginal zone)
synonym: "junctional zone of spleen" EXACT []
synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone]
synonym: "spleen marginal zone" EXACT []
xref: FMA:15852
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000755
xref: ncithesaurus:Marginal_Zone
relationship: adjacent_to UBERON:0001250 ! red pulp of spleen
relationship: adjacent_to UBERON:0001959 ! white pulp of spleen
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0001262
name: wall of intestine
namespace: uberon
alt_id: UBERON:FMA_15949-MA_0002693
def: "An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "bowel wall" EXACT [OBOL:automatic]
synonym: "intestinal wall" EXACT []
synonym: "intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "intestine wall" EXACT []
synonym: "wall of bowel" EXACT [OBOL:automatic]
xref: BTO:0000647
xref: FMA:15949
xref: MA:0002693
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0001265
name: trabecula of spleen
namespace: uberon
alt_id: UBERON:FMA_16027-MA_0000758
comment: This class was created automatically from a combination of ontologies
synonym: "spleen trabeculum" EXACT []
synonym: "splenic trabecula" EXACT []
xref: FMA:16027
xref: MA:0000758
xref: ncithesaurus:Splenic_Trabecula
xref: SCTID:61987002
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen

[Term]
id: UBERON:0001266
name: splenic cord
namespace: uberon
alt_id: UBERON:FMA_16031-MA_0002671
def: "A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis." [Wikipedia:Cords_of_Billroth]
synonym: "cord of Billroth" EXACT [Wikipedia:Cords_of_Billroth]
synonym: "cord of Bilroth" EXACT [FMA:16031]
xref: FMA:16031
xref: MA:0002671
xref: ncithesaurus:Splenic_Cord
relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen

[Term]
id: UBERON:0001276
name: epithelium of stomach
namespace: uberon
alt_id: UBERON:FMA_17091-MA_0001610
def: "the epithelial layer of the stomach ." [MP:0000471]
comment: in FMA this is classified as simple columnar, MA divides this into squamous and glandular
synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "epithelium of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric epithelium" RELATED [BTO:0000500]
synonym: "stomach epithelial tissue" EXACT [OBOL:automatic]
synonym: "stomach epithelium" EXACT [OBOL:automatic]
synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic]
synonym: "ventriculus epithelium" EXACT [OBOL:automatic]
xref: BTO:0000500
xref: EHDAA2:0001918
xref: FMA:17091
xref: MA:0001610
xref: SCTID:64977002
xref: VHOG:0001433
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004808 ! gastrointestinal system epithelium
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach

[Term]
id: UBERON:0001277
name: intestinal epithelium
namespace: uberon
alt_id: UBERON:FMA_17229-ZFA_0005124
def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. <a href='ZFIN_jump?record=ZDB-PUB-050209-3'>Crosnier et al. 2005</a>" [Wikipedia:Intestinal_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "bowel epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bowel" EXACT [OBOL:automatic]
synonym: "epithelial tissue of intestine" EXACT [OBOL:automatic]
synonym: "epithelium of bowel" EXACT [OBOL:automatic]
synonym: "epithelium of intestine" EXACT [OBOL:automatic]
synonym: "intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "intestine epithelium" RELATED []
synonym: "villous epithelium" EXACT [ZFA:0005124]
xref: BTO:0000781
xref: FMA:17229
xref: MA:0001536
xref: ncithesaurus:Intestinal_Epithelium
xref: SCTID:266135004
xref: TAO:0005124
xref: ZFA:0005124
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004808 ! gastrointestinal system epithelium
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa

[Term]
id: UBERON:0001278
name: epithelium of large intestine
namespace: uberon
alt_id: UBERON:FMA_17301-MA_0001545
def: "An epithelium that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal epithelium" EXACT []
synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "large intestine epithelium" EXACT []
xref: EMAPA:19257
xref: EMAPA:19262
xref: FMA:17301
xref: MA:0001545
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine

[Term]
id: UBERON:0001279
name: portal triad
namespace: uberon
alt_id: UBERON:FMA_17523-MA_0002499
def: "a component of the hepatic lobule, that consists of:     hepatic artery,    hepatic portal vein,    bile duct,    lymphatic vessels,    and the branch of the vagus nerve." [Wikipedia:Portal_triad]
comment: The misnomer "portal triad" traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver.
subset: uberon_slim
synonym: "trias hepatica" EXACT []
synonym: "trias hepatica" RELATED LATIN [Wikipedia:Portal_triad]
xref: FMA:17523
xref: MA:0002499
xref: ncithesaurus:Portal_Triad
xref: SCTID:362192000
relationship: part_of UBERON:0001172 ! hepatic acinus

[Term]
id: UBERON:0001280
name: liver parenchyma
namespace: uberon
alt_id: UBERON:0003223
alt_id: UBERON:FMA_17540-MA_0000366
def: "the functional units of the liver including the lobules." [MP:0008986]
comment: This class was created automatically from a combination of ontologies
synonym: "hepatic parenchyma" EXACT [FMA:17540]
synonym: "hepatic parenchyme" RELATED [VHOG:0000539]
synonym: "liver parenchyme" EXACT [XAO:0000454]
synonym: "parenchyma of liver" EXACT [FMA:17540]
xref: AAO:0010405
xref: EHDAA2:0001004
xref: EHDAA:2201
xref: EMAPA:17203
xref: FMA:17540
xref: MA:0000366
xref: SCTID:363535004
xref: VHOG:0000539
xref: XAO:0000454
relationship: develops_from UBERON:0005171 {source="EHDAA2"} ! hepatic duct
relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0001281
name: hepatic sinusoid
namespace: uberon
alt_id: UBERON:0003275
alt_id: UBERON:FMA_17543-MA_0000367-ZFA_0005091
def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "hepatic sinusoids" RELATED []
synonym: "liver sinusoid" EXACT []
synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic]
synonym: "sinusoid of liver" EXACT [OBOL:automatic]
synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
synonym: "vas capillare sinusoideum" EXACT []
xref: EHDAA2:0000999
xref: EHDAA:2199
xref: EHDAA:3997
xref: EHDAA:4003
xref: EHDAA:6992
xref: EHDAA:8084
xref: EMAPA:17365
xref: FMA:17543
xref: MA:0000367
xref: ncithesaurus:Hepatic_Sinusoid
xref: SCTID:67435004
xref: TAO:0005091
xref: VHOG:0000708
xref: ZFA:0005091
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0004647 ! liver lobule

[Term]
id: UBERON:0001282
name: intralobular bile duct
namespace: uberon
alt_id: UBERON:FMA_17545-MA_0002669
def: "The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver." [Wikipedia:Canals_of_Hering]
comment: Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct)
subset: uberon_slim
synonym: "canal of Hering" RELATED []
synonym: "canal of Herring" EXACT [FMA:17545]
synonym: "canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering]
synonym: "cholangiole" EXACT [FMA:17545]
synonym: "duct of Herring" RELATED [Wikipedia:Canals_of_Hering]
synonym: "intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering]
xref: BTO:0002840
xref: FMA:17545
xref: MA:0002669
xref: ncithesaurus:Canal_of_Hering
xref: SCTID:227002
xref: SCTID:269922006
is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct
relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus
relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule

[Term]
id: UBERON:0001283
name: bile canaliculus
namespace: uberon
alt_id: UBERON:FMA_17547-MA_0002495
def: "Fine tubular canals running between liver cells, throughout the parenchyma, usually occurring singly between each adjacent pair of cells, and forming a three-dimensional network of polyhedral meshes, with a single cell in each mesh[BTO]. A thin tube that collects bile secreted by hepatocytes. The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP,unvetted]." [BTO:0002841, Wikipedia:Bile_canaliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "bile canaliculi" RELATED PLURAL [Wikipedia:Bile_canaliculus]
synonym: "bile capillary" RELATED [BTO:0002841]
synonym: "biliary canaliculus" RELATED [BTO:0002841]
xref: BTO:0002841
xref: FMA:17547
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Gray1094.png/200px-Gray1094.png
xref: MA:0002495
xref: MESH:A.03.159.183.158.125
xref: ncithesaurus:Bile_Canaliculus
xref: SCTID:270023005
xref: TAO:0005163
xref: ZFA:0005163
relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus
relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct
relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule
relationship: part_of UBERON:0005452 {source="FMA"} ! hepatic plate

[Term]
id: UBERON:0001353
name: anal region
namespace: uberon
alt_id: UBERON:FMA_20347-MA_0000329
subset: uberon_slim
xref: EFO:0000847
xref: EHDAA2:0000122
xref: EHDAA:2931
xref: EMAPA:16831
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray408.png/200px-Gray408.png
xref: MA:0000329
xref: MAT:0000042
xref: MIAA:0000042
xref: ncithesaurus:Anal_Region
xref: SCTID:362680001
xref: VHOG:0000395
xref: WBbt:0006919
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0006866 ! terminal part of digestive tract

[Term]
id: UBERON:0001367
name: external anal sphincter
namespace: uberon
alt_id: UBERON:FMA_21930-MA_0001531
def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:Sphincter_ani_externus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external sphincter ani" EXACT []
synonym: "sphincter ani externus" RELATED []
xref: EMAPA:18265
xref: FMA:21930
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0001531
xref: ncithesaurus:External_Anal_Sphincter
is_a: UBERON:0004916 ! anal sphincter
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0001458
name: skin of lip
namespace: uberon
alt_id: UBERON:FMA_24764-MA_0001579
def: "A zone of skin that is part of a lip [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "lip skin" EXACT []
synonym: "lip zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of lip" EXACT [OBOL:automatic]
xref: FMA:24764
xref: MA:0001579
xref: ncithesaurus:Skin_of_the_Lip
xref: SCTID:244092005
relationship: part_of UBERON:0001833 ! lip

[Term]
id: UBERON:0001555
name: digestive tract
namespace: uberon
alt_id: UBERON:FMA_45615-MA_0000917-ZFA_0000112
def: "Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk:Human_gastrointestinal_tract, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855]
comment: GO says gut is region of DT, from intestines to anus. ZFA treats as synonym for alimentary canal, and treats it as the sum of DT + organs (ZF has no term from stomach). GO says intestines to anus (excludes stomach and esophagus). MA appears to agree with GO (stomach and esophagus are not parts). FMA includes stomach and esophagus as parts of gut -- the FMA divides gut into lower and upper GI tract; it's not clear if this is exhaustive (small intestine is in neither), but lower GI tract may correspond better to the GO definition. NOTE: GO now changed, see sf id in def xref. Note that FMA also has a term 'gastrointestinal tract', but this includes the liver
subset: uberon_slim
subset: vertebrate_core
synonym: "alimentary canal" EXACT []
synonym: "digestive tube" RELATED []
synonym: "enteric tract" EXACT [ZFA:0000112]
synonym: "gut" BROAD []
synonym: "gut tube" RELATED []
xref: AAO:0010023
xref: BILA:0000083
xref: BTO:0000511
xref: BTO:0000545
xref: EHDAA2:0000726
xref: EHDAA:518
xref: EMAPA:16247
xref: FBbt:00003125
xref: FMA:45615
xref: galen:AlimentaryTract
xref: ncithesaurus:Gastrointestinal_Tract
xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA
xref: TAO:0000112
xref: TGMA:0001819
xref: VHOG:0000309
xref: WBbt:0005743
xref: ZFA:0000112
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0001562
name: digastric
namespace: uberon
alt_id: UBERON:FMA_46291-MA_0002288
def: "The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]." [Wikipedia:Digastric_muscle]
subset: uberon_slim
synonym: "digastric muscle" RELATED [Wikipedia:Digastric_muscle]
synonym: "digastricus" RELATED [Wikipedia:Digastric_muscle]
synonym: "digastricus muscle" RELATED [Wikipedia:Digastric_muscle]
synonym: "musculus digastricus" RELATED LATIN [Wikipedia:Digastric_muscle]
synonym: "musculus digastricus" RELATED [Wikipedia:Digastric_muscle]
xref: EMAPA:25134
xref: FMA:46291
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Digastricus.png/200px-Digastricus.png
xref: MA:0002288
xref: ncithesaurus:Digastric_Muscle
xref: SCTID:244825002
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle

[Term]
id: UBERON:0001564
name: mylohyoid
namespace: uberon
alt_id: UBERON:FMA_46320-MA_0002344
def: "The mylohyoid muscle is a muscle running from the mandible to the hyoid bone, forming the floor of the oral cavity. These muscles are mesodermal in origin." [Wikipedia:Mylohyoid_muscle]
comment: mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3
subset: uberon_slim
synonym: "musculus mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "musculus mylohyoideus" RELATED LATIN [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoid muscle" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoideus muscle" EXACT [Wikipedia:Mylohyoid_muscle]
xref: FMA:46320
xref: MA:0002344
xref: ncithesaurus:Mylohyoid
xref: SCTID:244827005
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle

[Term]
id: UBERON:0001565
name: geniohyoid
namespace: uberon
alt_id: UBERON:FMA_46325-MA_0002308
def: "A narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]." [Wikipedia:Geniohyoid_muscle]
comment: Taxon notes: "Muscle that pulls the hyoid apparatus forward and depresses the lower jaw." [AAO:0010655]
subset: uberon_slim
synonym: "genio-hyoideus" EXACT []
synonym: "genio-hyoideus muscle" EXACT []
synonym: "geniohyoid muscle" RELATED [Wikipedia:Geniohyoid_muscle]
synonym: "geniohyoideus" RELATED [Wikipedia:Geniohyoid_muscle]
synonym: "geniohyoideus muscle" EXACT [Wikipedia:Geniohyoid_muscle]
synonym: "musculus geniohyoideus" RELATED LATIN [Wikipedia:Geniohyoid_muscle]
xref: AAO:0010655
xref: FMA:46325
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Geniohyoid_muscle.PNG/200px-Geniohyoid_muscle.PNG
xref: MA:0002308
xref: ncithesaurus:Geniohyoid
xref: SCTID:244828000
xref: XAO:0004127
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle

[Term]
id: UBERON:0001569
name: constrictor muscle of pharynx
namespace: uberon
alt_id: UBERON:FMA_46620-MA_0002278
comment: TODO - evaluate taxonomic specificity - functional definition?
subset: uberon_slim
synonym: "pharyngeal constrictor muscle" EXACT []
xref: EMAPA:18964
xref: FMA:46620
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Musculusconstrictorpharyngissuperior.png/200px-Musculusconstrictorpharyngissuperior.png
xref: MA:0002278
xref: SCTID:244799007
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0001570
name: inferior pharyngeal constrictor
namespace: uberon
alt_id: UBERON:FMA_46623-MA_0002279
def: "The Inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
subset: uberon_slim
synonym: "constrictor inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "constrictor pharyngis inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "constrictores pharyngis caudales" EXACT []
synonym: "inferior constrictor" EXACT [FMA:46623]
synonym: "inferior constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "inferior constrictor muscle" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "inferior constrictor of pharynx" EXACT [FMA:46623]
synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623]
synonym: "inferior pharyngeal constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:TA]
synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:46623, FMA:TA]
synonym: "musculus constrictor pharyngis inferior" RELATED LATIN [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
xref: FMA:46623
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Musculusconstrictorpharyngisinferior.png/200px-Musculusconstrictorpharyngisinferior.png
xref: MA:0002279
xref: SCTID:244803008
is_a: UBERON:0001569 ! constrictor muscle of pharynx

[Term]
id: UBERON:0001571
name: genioglossus
namespace: uberon
alt_id: UBERON:FMA_46690-MA_0002307
def: "Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue." [VHOG:0000847, Wikipedia:Genioglossus_muscle]
comment: taxon notes: Makes up bulk of tongue in frogs and salamanders; makes up entire tongue in caecilians. [AAO:0010660]
subset: uberon_slim
synonym: "genioglossus muscle" EXACT []
synonym: "musculus genioglossus" EXACT []
xref: AAO:0010660
xref: EHDAA2:0000704
xref: EHDAA:9150
xref: EMAPA:18276
xref: EMAPA:18881
xref: FMA:46690
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Genioglossus.png/200px-Genioglossus.png
xref: MA:0002307
xref: ncithesaurus:Genioglossus
xref: SCTID:244784007
xref: VHOG:0000847
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue
relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0001572
name: hyoglossus
namespace: uberon
alt_id: UBERON:FMA_46691-MA_0002317
def: "The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]." [Wikipedia:Hyoglossus_muscle]
subset: uberon_slim
synonym: "hyoglossus muscle" EXACT [Wikipedia:Hyoglossus]
xref: AAO:0010663
xref: EMAPA:18277
xref: EMAPA:18882
xref: FMA:46691
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Hyoglossus.png/200px-Hyoglossus.png
xref: MA:0002317
xref: ncithesaurus:Hyoglossus_Muscle
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue

[Term]
id: UBERON:0001573
name: styloglossus
namespace: uberon
alt_id: UBERON:FMA_46692-MA_0002387
def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus]
subset: uberon_slim
synonym: "musculus styloglossus" RELATED LATIN [Wikipedia:Styloglossus]
synonym: "syloglossus muscle" EXACT []
xref: EMAPA:18279
xref: EMAPA:18884
xref: FMA:46692
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Styloglossus.png/200px-Styloglossus.png
xref: MA:0002387
xref: ncithesaurus:Styloglossus
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0001723 {notes="tip and sides of tongue", source="dbpedia"} ! tongue

[Term]
id: UBERON:0001575
name: extrinsic muscle of tongue
namespace: uberon
alt_id: UBERON:FMA_46699-MA_0002296
comment: This class was created automatically from a combination of ontologies
synonym: "extrinsic tongue muscle" EXACT []
xref: EHDAA2:0002063
xref: EHDAA:9148
xref: FMA:46699
xref: MA:0002296
xref: SCTID:244782006
xref: VHOG:0000825
is_a: UBERON:0000378 ! tongue muscle

[Term]
id: UBERON:0001576
name: intrinsic muscle of tongue
namespace: uberon
alt_id: UBERON:FMA_46701-MA_0002327
comment: This class was created automatically from a combination of ontologies
synonym: "intrinsic lingual muscle" EXACT []
synonym: "intrinsic tongue muscle" EXACT []
xref: EHDAA2:0002064
xref: EHDAA:9152
xref: FMA:46701
xref: MA:0002327
xref: SCTID:244788005
xref: VHOG:0000748
is_a: UBERON:0000378 ! tongue muscle

[Term]
id: UBERON:0001716
name: secondary palate
namespace: uberon
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "Partition that separates the nasal and oral cavities[GO]. The palate is divided into two parts, the anterior bony hard palate, and the posterior fleshy soft palate or velum. The maxillary nerve branch of the trigeminal nerve (V) supplies sensory innervation to the palate[WP]." [GO:0060021, Wikipedia:Palate, Wikipedia:Secondary_palate]
comment: present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber.
subset: uberon_slim
synonym: "definitive palate" EXACT [EMAPA:18948]
synonym: "oral roof" EXACT []
synonym: "palate" BROAD SENSU [EMAPA:18948, GO:0060021, MA:0002476]
synonym: "palatum" BROAD []
synonym: "palatum" RELATED LATIN [Wikipedia:Palate]
synonym: "palatum secundarium; palatum definitivum" RELATED LATIN [Wikipedia:Secondary_palate]
synonym: "roof of mouth" EXACT []
xref: BTO:0001779
xref: EMAPA:18948
xref: FMA:54549
xref: GAID:152
xref: galen:Palate
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0002476
xref: MESH:A.14.521.658
xref: ncithesaurus:Palate
xref: SCTID:181227004
relationship: adjacent_to UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0001723
name: tongue
namespace: uberon
alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446
def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue]
comment: editor notes - in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence. Taxon notes: Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods. Development notes: The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "lingua" RELATED LATIN [Wikipedia:Tongue]
xref: AAO:0010360
xref: BTO:0001385
xref: EFO:0000833
xref: EHDAA2:0002062
xref: EHDAA:9144
xref: EMAPA:17185
xref: EMAPA:18870
xref: EV:0100058
xref: FMA:54640
xref: GAID:816
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Tongue.agr.jpg/200px-Tongue.agr.jpg
xref: MA:0000347
xref: MAT:0000040
xref: MESH:A.14.549.885
xref: MIAA:0000040
xref: ncithesaurus:Tongue
xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ
xref: SCTID:181226008
xref: TAO:0005333
xref: VHOG:0000419
xref: XAO:0000446
xref: ZFA:0005333
relationship: adjacent_to UBERON:0000166 ! oral opening
relationship: develops_from UBERON:0010056 {evidence="definitional"} ! future tongue
relationship: has_developmental_contribution_from UBERON:0006260 {notes="anterior 2/3"} ! lingual swellings
relationship: has_developmental_contribution_from UBERON:0006756 {source="Wikipedia"} ! median lingual swelling
relationship: has_developmental_contribution_from UBERON:0006757 {source="Wikipedia"} ! lateral lingual swelling
relationship: part_of UBERON:0000165 {source="FMA", source="BTO"} ! mouth

[Term]
id: UBERON:0001726
name: papilla of tongue
namespace: uberon
alt_id: UBERON:FMA_54819-MA_0001593
synonym: "lingual papilla" EXACT []
synonym: "tongue papilla" EXACT []
xref: FMA:54819
xref: MA:0001593
xref: ncithesaurus:Papilla_of_the_Tongue
xref: NIF_GrossAnatomy:birnlex_4102
xref: SCTID:368728006
relationship: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue

[Term]
id: UBERON:0001727
name: taste bud
namespace: uberon
alt_id: UBERON:FMA_54825-MA_0001591-XAO_0000445-ZFA_0001074
def: "Taste buds are small structures on the upper surface of the tongue, soft palate, upper esophagus and epiglottis that provide information about the taste of food being eaten. These structures are involved in detecting the five elements of taste perception: salty, sour, bitter, sweet, and umami (or savory). Via small openings in the tongue epithelium, called taste pores, parts of the food dissolved in saliva come into contact with the taste receptors. These are located on top of the taste receptor cells that constitute the taste buds. The taste receptor cells send information detected by clusters of various receptors and ion channels to the gustatory areas of the brain via the seventh, ninth and tenth cranial nerves. The human tongue has about 10,000 taste buds. [WP,unvetted]." [Wikipedia:Taste_bud]
comment: Editor notes: todo - account for non-tongue taste buds. Development notes: arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN10:1607950324 (todo - request cell terms from CL) Taste buds form in greatest concentration on the dorsal surface of the tongue
subset: uberon_slim
subset: vertebrate_core
synonym: "caliculus gustatorius" RELATED LATIN [Wikipedia:Taste_bud]
synonym: "caliculus gustatorius" RELATED PLURAL [Wikipedia:Taste_bud]
synonym: "taste buds" RELATED PLURAL [Wikipedia:Taste_bud]
synonym: "taste-bud" RELATED [Wikipedia:Taste_bud]
synonym: "tastebud" EXACT [Wikipedia:Taste_bud]
synonym: "tastebuds" RELATED PLURAL [Wikipedia:Taste_bud]
xref: AAO:0010573
xref: BTO:0000989
xref: FMA:54825
xref: GAID:815
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Gray1018.png/200px-Gray1018.png
xref: MA:0001591
xref: MESH:A.08.800.550.700.120.800
xref: ncithesaurus:Taste_Bud
xref: NIF_GrossAnatomy:birnlex_4101
xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA
xref: SCTID:362099006
xref: TAO:0001074
xref: VHOG:0000130
xref: XAO:0000445
xref: ZFA:0001074
is_a: UBERON:0004906 ! ectodermal gut
relationship: develops_from UBERON:0007690 {source="http://dev.biologists.org/content/128/22/4573.full"} ! early pharyngeal endoderm
relationship: part_of UBERON:0001726 {source="Wikipedia"} ! papilla of tongue
relationship: part_of UBERON:0002926 {source="NIF"} ! gustatory epithelium

[Term]
id: UBERON:0001728
name: nasopharynx
namespace: uberon
alt_id: UBERON:FMA_54878-MA_0000443
def: "uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate; it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. In front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Nasopharynx]
subset: uberon_slim
synonym: "epipharynx" RELATED [Wikipedia:Pharynx]
synonym: "nasal part of pharynx" EXACT []
synonym: "Nasenrachenraum" RELATED [BTO:0000662]
synonym: "pars nasalis pharyngis" RELATED LATIN [Wikipedia:Nasopharynx]
synonym: "rhinopharynx" EXACT []
xref: BTO:0000662
xref: EHDAA2:0001239
xref: EHDAA:7086
xref: EMAPA:17670
xref: EMAPA:25092
xref: EV:0100066
xref: FMA:54878
xref: GAID:339
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000443
xref: MAT:0000447
xref: MESH:A.03.867.557
xref: ncithesaurus:Nasopharynx
xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA
xref: SCTID:181200003
xref: VHOG:0000375
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0001729
name: oropharynx
namespace: uberon
alt_id: UBERON:FMA_54879-MA_0000351
def: "The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]." [Wikipedia:Oropharynx]
subset: uberon_slim
synonym: "mesopharynx" RELATED [Wikipedia:Pharynx]
synonym: "oral part of pharynx" EXACT []
synonym: "pars oralis pharyngis" RELATED LATIN [Wikipedia:Oropharynx]
xref: EFO:0001976
xref: EHDAA2:0004082
xref: EMAPA:25094
xref: EV:0100067
xref: FMA:54879
xref: GAID:340
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000351
xref: MAT:0000446
xref: MESH:A.03.867.603
xref: ncithesaurus:Oropharynx
xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA
xref: SCTID:263376008
xref: VHOG:0000457
xref: VSAO:0000034
xref: XAO:0004048
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0001731
name: cavity of pharynx
namespace: uberon
alt_id: UBERON:FMA_54935-XAO_0000105
comment: Taxon notes: See notes for pharynx - as a grouping class this is probably too bad. We exclude WBbt:0005790 (pharyngeal lumen) because of the developmental relationship. Development notes: TOODO check
synonym: "cavitas pharyngis" RELATED [BTO:0002097]
synonym: "lumen of pharynx" EXACT []
synonym: "pharyngeal cavity" EXACT []
xref: AAO:0010435
xref: BTO:0002097
xref: EMAPA:18381
xref: EMAPA:18869
xref: FMA:54935
xref: SCTID:180543003
xref: XAO:0000105
relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut
relationship: part_of UBERON:0001007 {source="XAO"} ! digestive system
relationship: part_of UBERON:0006562 ! pharynx

[Term]
id: UBERON:0001732
name: pharyngeal tonsil
namespace: uberon
alt_id: UBERON:FMA_54970-MA_0000774
def: "Adenoids (or pharyngeal tonsils, or nasopharyngeal tonsils) are a mass of lymphoid tissue situated at the very back of the nose, in the roof of the nasopharynx, where the nose blends into the mouth. Normally, in children, they make a soft mound in the roof and posterior wall of the nasopharynx, just above and behind the uvula. [WP,unvetted]." [Wikipedia:Pharyngeal_tonsil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adenoid" EXACT []
synonym: "nasopharyngeal tonsil" EXACT []
synonym: "Rachenmandel" RELATED [BTO:0000777]
synonym: "tonsil of luschka" EXACT []
synonym: "tonsilla pharyngea" RELATED LATIN [Wikipedia:Pharyngeal_tonsil]
xref: BTO:0000777
xref: EFO:0001401
xref: EV:0100054
xref: FMA:54970
xref: GAID:1288
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray994-adenoid.png/200px-Gray994-adenoid.png
xref: MA:0000774
xref: MESH:A.15.382.520.604.084
xref: ncithesaurus:Pharyngeal_Tonsil
xref: SCTID:181199001
is_a: UBERON:0002372 ! tonsil
relationship: part_of UBERON:0001728 ! nasopharynx

[Term]
id: UBERON:0001733
name: soft palate
namespace: uberon
alt_id: UBERON:FMA_55021-MA_0002412-MIAA_0000039
def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscular palate" RELATED [Wikipedia:Soft_palate]
synonym: "palatum molle, velum palatinum" RELATED LATIN [Wikipedia:Soft_palate]
synonym: "velum" RELATED [Wikipedia:Soft_palate]
xref: EMAPA:18949
xref: FMA:55021
xref: GAID:1284
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: MA:0002412
xref: MAT:0000039
xref: MESH:A.14.549.617.780
xref: MIAA:0000039
xref: ncithesaurus:Soft_Palate
xref: SCTID:245784004
relationship: part_of UBERON:0000165 {source="FMA"} ! mouth
relationship: part_of UBERON:0001716 {source="MA"} ! secondary palate

[Term]
id: UBERON:0001734
name: uvula
namespace: uberon
alt_id: UBERON:FMA_55022-MA_0001006
def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Palatine_uvula]
subset: uberon_slim
synonym: "palatine uvula" EXACT []
synonym: "uvula of palate" EXACT []
synonym: "uvula palatina" EXACT [FMA:55022, FMA:TA]
synonym: "uvula palatina" RELATED LATIN [Wikipedia:Palatine_uvula]
xref: EFO:0001386
xref: FMA:55022
xref: GAID:1285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: MESH:A.14.549.617.780.729
xref: ncithesaurus:Uvula
xref: SCTID:362082005
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0001735
name: tonsillar ring
namespace: uberon
alt_id: UBERON:FMA_55070-MA_0000752
def: "lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring]
comment: see also FMA:79771 naso-pharyngeal lymphoid tissue
subset: uberon_slim
synonym: "anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA]
synonym: "oropharyngeal lymphoid tissue" EXACT []
synonym: "pharyngeal lymphatic ring" EXACT []
synonym: "pharyngeal lymphoid ring" EXACT []
synonym: "Waldeyer's ring" EXACT []
synonym: "Waldeyer's tonsillar ring" EXACT []
xref: FMA:55070
xref: MA:0000752
xref: ncithesaurus:Waldeyers_Tonsillar_Ring
xref: SCTID:56411004
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0001736
name: submandibular gland
namespace: uberon
alt_id: UBERON:FMA_55093-MA_0001589
def: "The paired submandibular glands (submaxillary glands) are salivary glands located beneath the floor of the mouth. In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]." [Wikipedia:Submandibular_gland]
comment: TODO check SSG vs SG
subset: uberon_slim
synonym: "glandula submandibularis" RELATED LATIN [Wikipedia:Submandibular_gland]
synonym: "submandibular salivary gland" RELATED []
synonym: "submaxillary gland" RELATED []
xref: BTO:0001316
xref: EFO:0001387
xref: EMAPA:18812
xref: EV:0100061
xref: FMA:55093
xref: GAID:942
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0001589
xref: MESH:A.10.336.779.812
xref: ncithesaurus:Submandibular_Gland
xref: SCTID:181235001
xref: VHOG:0000364
is_a: UBERON:0001829 ! major salivary gland
relationship: develops_from UBERON:0006298 ! submandibular gland primordium

[Term]
id: UBERON:0001742
name: epiglottic cartilage
namespace: uberon
alt_id: UBERON:FMA_55112-MA_0001763
def: "the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259]
comment: AO notes: laryngeal cartilage in MP
subset: uberon_slim
xref: FMA:55112
xref: MA:0001763
xref: ncithesaurus:Epiglottic_Cartilage
xref: SCTID:278990001
relationship: part_of UBERON:0000388 ! epiglottis

[Term]
id: UBERON:0001751
name: dentine
namespace: uberon
alt_id: UBERON:FMA_55628-MA_0002542-ZFA_0005143
def: "a tubular mineralized tissue[H&W]. In mammals - substance of tooth produced by odontoblasts; surrounds the pulp of the tooth and is subjacent to enamel and cement[FMA]. Mineralized collagen containing substance that forms the tooth structure[ZFA]. a calcified tissue of the body, and along with enamel, cementum, and pulp is one of the four major components of teeth[WP]." [Wikipedia:Dentin, ZFIN:curator]
comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. H&W describe a continuum atubular - meta/orthodentine - mesi/semidentine - cement and without cementoblasts. TODO - odontoid tissue. Editors note: note the asserted dual is_a parentage, as dentine is both skeletal tissue and a substance
subset: uberon_slim
subset: vertebrate_core
synonym: "dentin" EXACT [MA:0002542]
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
xref: FMA:55628
xref: GAID:1272
xref: MA:0002542
xref: MESH:A.14.254.900.280
xref: ncithesaurus:Dentin
xref: SCTID:362112004
xref: TAO:0005143
xref: VSAO:0000069
xref: XAO:0004051
xref: ZFA:0005143
is_a: UBERON:0001973 ! substance of tooth

[Term]
id: UBERON:0001752
name: enamel
namespace: uberon
alt_id: UBERON:FMA_55629-MA_0002543-ZFA_0005142
def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel_organ, ZFIN:curator]
comment: Tooth enamel is also found in the dermal denticles of sharks UBERON:0000041. For the most part, research has shown that formation in animals is almost identical to formation in humans. The enamel organ, including the dental papilla, and ameloblasts function similarly.[53] The variations of enamel that are present are infrequent but sometimes important. Differences exist, certainly, in the morphology, number, and types of teeth among animals. H&W - highly mineralized, hard, prismatic, avascular outer layer of vertebrate teeth and some scales. Enamel is unique in being the only noncollagenous mineralized vertebrate skeletal tissue (Diekwisch, 2002). The enamel proteins amelogenin, enamelin, tuftelin, MMP-20, and EMSP-1 form a highly conserved family of matrix proteins (Satchell et al., 2002). Like dentine, enamel is both odontogenic and skeletogenic; enamel covers teeth and dermal skeletal tissues. Because of its very high mineral content, enamel is much more resistant to wear than dentine; some 96% of mammalian enamel is inorganic, and only 0.5% organic. // TODO - split enamel and enameloid
subset: uberon_slim
subset: vertebrate_core
synonym: "enamel of tooth" EXACT []
synonym: "enameloid" RELATED []
synonym: "tooth enamel" EXACT []
xref: BTO:0001844
xref: FMA:55629
xref: MA:0002543
xref: MESH:A.14.254.900.255
xref: ncithesaurus:Enamel
xref: SCTID:362113009
xref: TAO:0005142
xref: VSAO:0000065
xref: XAO:0004198
xref: ZFA:0005142
is_a: UBERON:0001973 ! substance of tooth

[Term]
id: UBERON:0001753
name: cementum
namespace: uberon
alt_id: UBERON:FMA_55630-MA_0002541
def: "A bone-like mineralized tissue secreted by cementoblasts on the surface of root dentine or, in some animals, crown enamel[Diekwisch 2001]. Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum]
comment: Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W]
synonym: "cement" EXACT []
synonym: "cement of tooth" EXACT []
synonym: "cementum" EXACT []
synonym: "cementum of tooth" EXACT []
xref: BTO:0002525
xref: FMA:55630
xref: MA:0002541
xref: MESH:A.14.254.646.267
xref: ncithesaurus:Cementum
xref: SCTID:362114003
xref: VSAO:0000062
xref: XAO:0004196
is_a: UBERON:0001973 ! substance of tooth

[Term]
id: UBERON:0001754
name: dental pulp
namespace: uberon
alt_id: UBERON:FMA_55631-MA_0001599
def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "dental pulp cell" RELATED [BTO:0000339]
synonym: "pulp of tooth" EXACT []
synonym: "tooth pulp" EXACT [ZFA:0005141]
xref: BTO:0000339
xref: FMA:55631
xref: GAID:1270
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0001599
xref: MESH:A.14.254.900.260
xref: ncithesaurus:Dental_Pulp
xref: SCTID:362110007
xref: TAO:0005141
xref: VHOG:0001469
xref: ZFA:0005141
relationship: develops_from UBERON:0001763 ! dental papilla
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0001758
name: periodontium
namespace: uberon
alt_id: UBERON:FMA_56665-MA_0002467
def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
comment: note FMA treats periodontium and periodontal ligament as the same
synonym: "paradentium" RELATED [MESH:A.14.254.646]
synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665]
synonym: "periodontal membrane" RELATED [MA:0002467]
synonym: "tooth supporting structure" RELATED [MESH:A.14.254.646]
xref: BTO:0001021
xref: FMA:56665
xref: GAID:216
xref: MESH:A.14.254.646
xref: ncithesaurus:Periodontium
relationship: adjacent_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003672 {source="cjm"} ! dentition

[Term]
id: UBERON:0001763
name: dental papilla
namespace: uberon
alt_id: UBERON:FMA_57662-MA_0001598-ZFA_0005140
def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina[ZFA]. The dental papilla is a condensation of ectomesenchymal cells called odontoblasts, seen in histologic sections of a developing tooth. It lies below a cellular aggregation known as the enamel organ. The dental papilla appears after 8-10 weeks intra uteral life. The dental papilla gives rise to the dentin and pulp of a tooth. The enamel organ, dental papilla, and dental follicle together forms one unit, called the tooth germ. This is of importance because all the tissues of a tooth and its supporting structures form from these distinct cellular aggregations." [Wikipedia:Dental_papilla, ZFA:0005140]
comment: todo - add child terms for EMAPA. todo - check if the FMA and MA structures refer to developed structures. todo - check part_of - should perhaps be adjacent_to? Check relationships across taxa.
subset: uberon_slim
subset: vertebrate_core
synonym: "dentinal papilla" RELATED [BTO:0001839]
synonym: "papilla dentis" RELATED [BTO:0001839]
synonym: "papilla dentis" RELATED LATIN [Wikipedia:Dental_papilla]
synonym: "pharyngeal tooth mesenchyme" RELATED [ZFA:0005140]
synonym: "tooth mesenchyme" RELATED [ZFA:0005140]
xref: BTO:0001839
xref: FMA:57662
xref: GAID:1277
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray1011.png/200px-Gray1011.png
xref: MA:0001598
xref: MESH:A.14.254.900.720.250
xref: TAO:0005140
xref: VHOG:0001465
xref: VSAO:0000025
xref: XAO:0004045
xref: ZFA:0005140
is_a: UBERON:0005087 {source="MESH"} ! tooth placode
relationship: develops_from UBERON:0003856 {source="ZFA"} ! dental mesenchyme
relationship: part_of UBERON:0001091 {source="MA"} ! calcareous tooth
relationship: part_of UBERON:0001828 {source="FMA"} ! gingiva
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ

[Term]
id: UBERON:0001828
name: gingiva
namespace: uberon
alt_id: UBERON:FMA_59762-MA_0000342
def: "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
comment: AO notes: FMA has gingiva of upper and lower jaw
subset: uberon_slim
synonym: "gum" EXACT [FMA:59762]
synonym: "gum tissue" EXACT [UBERON:cjm]
xref: BTO:0000519
xref: EFO:0001925
xref: EMAPA:18967
xref: EMAPA:18970
xref: EV:0100064
xref: FMA:59762
xref: GAID:1257
xref: galen:Gingiva
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0000342
xref: MESH:A.14.254.646.480
xref: ncithesaurus:Gingiva
xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA
xref: SCTID:181224006
xref: VHOG:0001269
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0003729 {source="FMA"} ! mouth mucosa

[Term]
id: UBERON:0001829
name: major salivary gland
namespace: uberon
alt_id: UBERON:FMA_59788-MA_0002478
def: "the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
xref: FMA:59788
xref: galen:MajorSalivaryGland
xref: MA:0002478
xref: ncithesaurus:Major_Salivary_Gland
xref: SCTID:303049006
is_a: UBERON:0001044 ! salivary gland

[Term]
id: UBERON:0001830
name: minor salivary gland
namespace: uberon
alt_id: UBERON:FMA_59789-MA_0002479
def: "the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for Von Ebner's glands) and have many functions such as coating the oral cavity with saliva. Problems with dentures are usually associated with minor salivary glands[WP]." [MP:0003791, Wikipedia:Salivary_gland#Minor_Salivary_Glands]
subset: organ_slim
xref: FMA:59789
xref: GAID:940
xref: galen:MinorSalivaryGland
xref: MA:0002479
xref: MESH:A.10.336.779.650
xref: ncithesaurus:Minor_Salivary_Gland
xref: SCTID:362177001
is_a: UBERON:0001044 ! salivary gland
relationship: part_of UBERON:0005334 ! oral lamina propria

[Term]
id: UBERON:0001831
name: parotid gland
namespace: uberon
alt_id: UBERON:FMA_59790-MA_0001585
def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [Wikipedia:Parotid_gland]
subset: uberon_slim
synonym: "glandula parotidea" RELATED LATIN [Wikipedia:Parotid_gland]
synonym: "parotid" EXACT []
xref: AAO:0010095
xref: BTO:0001004
xref: EFO:0002558
xref: EMAPA:18537
xref: EV:0100060
xref: FMA:59790
xref: GAID:938
xref: galen:ParotidGland
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0001585
xref: MESH:A.10.336.779.464
xref: ncithesaurus:Parotid_Gland
xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA
xref: SCTID:181234002
xref: VHOG:0000308
is_a: UBERON:0001829 ! major salivary gland

[Term]
id: UBERON:0001832
name: sublingual gland
namespace: uberon
alt_id: UBERON:FMA_59791-MA_0001588
def: "The sublingual glands are salivary glands in the mouth. They lie anterior to the submandibular gland under the tongue, beneath the mucous membrane of the floor of the mouth. They are drained by 8-20 excretory ducts called the ducts of Rivinus. The largest duct, the sublingual duct (of Bartholin) joins the submandibular duct to drain through the sublingual caruncle. The sublingual gland consists mostly of Mucous acini capped with serous demilunes and is therefore categorized as a mixed gland. Most of the remaining small sublingual ducts open separately into the mouth on an elevated crest of mucous membrane, the sublingual fold, caused by the gland and on either side of the frenulum linguae. The chorda tympani nerve is secretomotor to the sublingual glands. [WP,unvetted]." [Wikipedia:Sublingual_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ductus sublingualis" EXACT []
synonym: "glandula sublingualis" RELATED LATIN [Wikipedia:Sublingual_gland]
synonym: "Rivinus gland" RELATED [BTO:0001315]
synonym: "Rivinus' gland" EXACT []
synonym: "sublingual salivary gland" RELATED []
synonym: "submaxillary gland" RELATED [MA:0001589]
xref: BTO:0001315
xref: EMAPA:18809
xref: EV:0100062
xref: FMA:59791
xref: GAID:941
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png
xref: MA:0001588
xref: MESH:A.10.336.779.687
xref: ncithesaurus:Sublingual_Salivary_Gland
xref: SCTID:362176005
xref: VHOG:0000363
is_a: UBERON:0001829 {source="FMA"} ! major salivary gland
relationship: develops_from UBERON:0006297 ! sublingual gland primordium

[Term]
id: UBERON:0001833
name: lip
namespace: uberon
alt_id: UBERON:FMA_59816-ZFA_0007006
def: "One of the two fleshy folds which surround the opening of the mouth. http://www.medterms.com/script/main/art.asp?articlekey=9458" [Wikipedia:Lip, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "labia oris" RELATED LATIN [Wikipedia:Lip]
synonym: "lips" RELATED []
xref: BTO:0001647
xref: FMA:59816
xref: GAID:76
xref: galen:Lip
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg
xref: MA:0000343
xref: MESH:A.01.456.505.631.515
xref: ncithesaurus:Lip
xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA
xref: SCTID:181221003
xref: TAO:0007006
xref: VHOG:0000677
xref: ZFA:0007006
property_value: RO:0002161 NCBITaxon:8782
relationship: part_of UBERON:0000165 ! mouth
relationship: surrounds UBERON:0000166 ! oral opening

[Term]
id: UBERON:0001834
name: upper lip
namespace: uberon
alt_id: UBERON:0003391
alt_id: UBERON:FMA_59817-MA_0000919
def: "The upper lip covers the anterior surface of the body of the maxilla. Its upper half is of usual skin color and has a depression at its centre, directly under the nasal septum, called the philtrum, while its lower half is a markedly different, red-colored skin tone more similar to the colour of the inside of the mouth, and the term vermillion refers to the colored portion of either the upper or lower lip. It is raised by the Levator labii superioris and is connected to the lower lip by the thin lining of the lip itself, which can be seen by opening your mouth wide in front of a mirror. Thinning of the vermilion of the upper lip and flattening of the philtrum are two of the facial characteristics of Fetal alcohol syndrome, a life-long disability caused by the consumption of alcohol during pregnancy. [WP,unvetted]." [Wikipedia:Upper_lip]
comment: Editor notes: add spatial relationships after jaw terms fixed
subset: uberon_slim
subset: vertebrate_core
synonym: "labium superius oris" RELATED LATIN [Wikipedia:Upper_lip]
synonym: "upper jaw lip" EXACT [UBERON:cjm]
xref: EMAPA:17925
xref: FMA:59817
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0000919
xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA
xref: SCTID:245776003
xref: TAO:0001970
xref: ZFA:0005226
is_a: UBERON:0001833 ! lip
relationship: develops_from UBERON:0005868 ! maxillary prominence

[Term]
id: UBERON:0001835
name: lower lip
namespace: uberon
alt_id: UBERON:0003392
alt_id: UBERON:FMA_59818-MA_0000921
def: "The lower lip (also called underlip) covers the anterior body of the mandible. It is lowered by the Depressor labii inferioris muscle. [WP,unvetted]." [Wikipedia:Lower_lip]
comment: Editor notes: add spatial relationships after jaw terms fixed
subset: uberon_slim
subset: vertebrate_core
synonym: "labium inferius oris" RELATED LATIN [Wikipedia:Lower_lip]
synonym: "lower jaw lip" EXACT [UBERON:cjm]
xref: EHDAA2:0001020
xref: EMAPA:17909
xref: FMA:59818
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg
xref: MA:0000921
xref: ncithesaurus:Lower_Lip
xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA
xref: SCTID:245777007
xref: TAO:0002060
xref: ZFA:0005225
is_a: UBERON:0001833 ! lip
relationship: develops_from UBERON:0005867 {source="Wikipedia:Mandibular_prominence"} ! mandibular prominence

[Term]
id: UBERON:0001837
name: duct of salivary gland
namespace: uberon
alt_id: UBERON:FMA_59908-MA_0001586
def: "An intralobular duct found in salivary glands and involved in the production and transport of their secretions[BTO]." [BTO:0005115, Wikipedia:Salivary_duct]
comment: check taxonomy coverage - define functionally?
subset: uberon_slim
synonym: "salivary duct" EXACT []
synonym: "salivary gland duct" EXACT []
synonym: "secretory duct" RELATED [BTO:0005115]
xref: BTO:0005115
xref: FMA:59908
xref: GAID:939
xref: MA:0001586
xref: MESH:A.10.336.779.640
xref: SCTID:181238004
is_a: UBERON:0003928 ! digestive system duct
relationship: channels_from UBERON:0001044 ! salivary gland
relationship: channels_into UBERON:0000165 ! mouth
relationship: part_of UBERON:0001044 ! salivary gland

[Term]
id: UBERON:0001838
name: sublingual duct
namespace: uberon
alt_id: UBERON:FMA_59983-MA_0002699
def: "The excretory ducts of the sublingual gland are from eight to twenty in number. Of the smaller sublingual ducts (ducts of Rivinus), some join the submandibular duct; others open separately into the mouth, on the elevated crest of mucous membrane (plica sublingualis), caused by the projection of the gland, on either side of the frenulum linguae. One or more join to form the major sublingual duct (larger sublingual duct, duct of Bartholin), which opens into the submandibular duct. [WP,unvetted]." [Wikipedia:Sublingual_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0004558
xref: FMA:59983
xref: MA:0002699
xref: SCTID:281000009
is_a: UBERON:0001837 ! duct of salivary gland
intersection_of: UBERON:0001837 ! duct of salivary gland
intersection_of: part_of UBERON:0001832 ! sublingual gland
relationship: channels_from UBERON:0001832 ! sublingual gland
relationship: part_of UBERON:0001832 ! sublingual gland

[Term]
id: UBERON:0001902
name: epithelium of small intestine
namespace: uberon
alt_id: UBERON:FMA_62017-MA_0001553
def: "An epithelium that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic]
synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic]
synonym: "epithelium of small bowel" EXACT [OBOL:automatic]
synonym: "mid intestine epithelium" EXACT [ZFA:0005127]
synonym: "small bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "small bowel epithelium" EXACT [OBOL:automatic]
synonym: "small intestinal epithelium" EXACT []
synonym: "small intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "small intestine epithelium" EXACT []
xref: BTO:0001258
xref: FMA:62017
xref: MA:0001553
xref: SCTID:45480009
xref: TAO:0005127
xref: ZFA:0005127
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001949
name: gingival epithelium
namespace: uberon
alt_id: UBERON:FMA_62423-MA_0001576
def: "A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic]
synonym: "epithelium of gingiva" EXACT []
synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic]
synonym: "gingiva epithelium" EXACT [OBOL:automatic]
xref: BTO:0004998
xref: FMA:62423
xref: MA:0001576
xref: ncithesaurus:Gingival_Epithelium
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001828 ! gingiva

[Term]
id: UBERON:0001951
name: epithelium of nasopharynx
namespace: uberon
alt_id: UBERON:0003237
alt_id: UBERON:FMA_62452-MA_0001865
def: "An epithelium that is part of a nasopharynx [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic]
synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasopharynx epithelium" EXACT []
synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic]
xref: BTO:0004480
xref: EHDAA2:0001241
xref: EHDAA:7090
xref: EMAPA:17672
xref: FMA:62452
xref: MA:0001865
xref: ncithesaurus:Nasopharynx_Epithelium
xref: VHOG:0001038
is_a: UBERON:0003351 ! pharyngeal epithelium
relationship: part_of UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium

[Term]
id: UBERON:0001952
name: epithelium of oropharynx
namespace: uberon
alt_id: UBERON:FMA_62453-MA_0001605
def: "An epithelium that is part of a oropharynx [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "oropharynx epithelium" EXACT [MA:0001605]
xref: EHDAA2:0004083
xref: FMA:62453
xref: MA:0001605
xref: ncithesaurus:Oropharynx_Epithelium
is_a: UBERON:0003351 ! pharyngeal epithelium
is_a: UBERON:0004808 ! gastrointestinal system epithelium
relationship: part_of UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium

[Term]
id: UBERON:0001959
name: white pulp of spleen
namespace: uberon
alt_id: UBERON:FMA_62805-MA_0000762
def: "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located." [Wikipedia:White_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "noduli lymphoidei splenici" RELATED LATIN [Wikipedia:White_pulp]
synonym: "pulpa alba" EXACT [FMA:62805, FMA:TA]
synonym: "spleen white pulp" EXACT []
synonym: "splenic white pulp" EXACT []
synonym: "white pulp" EXACT []
xref: FMA:62805
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000762
xref: ncithesaurus:Splenic_White_Pulp
is_a: UBERON:1000023 ! spleen pulp

[Term]
id: UBERON:0001960
name: periarterial lymphatic sheath
namespace: uberon
alt_id: UBERON:FMA_62810-MA_0000765
def: "the area of the spleen in which T cells surround the central arteriole" [MP:0002358]
comment: AO notes: FMA distinguishes periarterial (PALS) from periarteriolar (FMA:62806)
synonym: "PALS" EXACT [MP:0002358]
synonym: "periarterial lymphoid sheath" EXACT []
synonym: "periarteriolar sheath" EXACT [MP:0002358]
synonym: "spleen periarteriolar lymphatic sheath" EXACT []
synonym: "splenic periarteriolar lymphoid sheath" RELATED [MP:0002358]
synonym: "T cell domain of the splenic white pulp" EXACT [MP:0002358]
xref: FMA:62810
xref: MA:0000765
relationship: part_of UBERON:0001959 ! white pulp of spleen

[Term]
id: UBERON:0001962
name: gut-associated lymphoid tissue
namespace: uberon
alt_id: UBERON:FMA_62820-MA_0000136
def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
subset: uberon_slim
synonym: "GALT" RELATED []
synonym: "gut associated lymphoid tissue" EXACT []
xref: FMA:62820
xref: MA:0000136
xref: ncithesaurus:Gut_Associated_Lymphoid_Tissue
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0001972
name: submucosa of esophagus
namespace: uberon
alt_id: UBERON:FMA_62997-MA_0002724
def: "A submucosa that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal submucosa" EXACT []
synonym: "esophagus submucosa" EXACT []
synonym: "gullet submucosa" EXACT [OBOL:automatic]
synonym: "oesophagus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of esophagus" EXACT []
synonym: "submucosa of gullet" EXACT [OBOL:automatic]
synonym: "submucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "tela submucosa oesophageae" EXACT [FMA:62997, FMA:TA]
xref: BTO:0002109
xref: FMA:62997
xref: MA:0002724
xref: SCTID:362128009
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus

[Term]
id: UBERON:0001973
name: substance of tooth
namespace: uberon
alt_id: UBERON:FMA_63001-MA_0002540
def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts.[FMA]" [FMA:63001]
comment: note the asserted dual parentage. This is deliberate, pending better definitions of the distinction between substance and tissue
subset: uberon_slim
synonym: "portion of substance of tooth" EXACT [FMA:63001]
synonym: "tooth substance" EXACT []
xref: FMA:63001
xref: MA:0002540
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0001974
name: lamina propria of esophagus
namespace: uberon
alt_id: UBERON:FMA_63050-MA_0001568
def: "A lamina propria that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus lamina propria" EXACT []
synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "esophagus lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "gullet lamina propria" EXACT [OBOL:automatic]
synonym: "gullet lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "gullet lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of esophagus" EXACT []
synonym: "lamina propria mucosae of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of oesophagus" EXACT [OBOL:automatic]
synonym: "lamina propria of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus lamina propria" RELATED []
synonym: "oesophagus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "oesophagus lamina propria mucosae" EXACT [OBOL:automatic]
xref: EMAPA:26987
xref: EMAPA:27003
xref: FMA:63050
xref: MA:0001568
xref: ncithesaurus:Esophageal_Lamina_Propria
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa

[Term]
id: UBERON:0001975
name: serosa of esophagus
namespace: uberon
alt_id: UBERON:FMA_63057-MA_0001571
def: "A serous membrane that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus serosa" EXACT []
synonym: "esophagus serous membrane" EXACT [OBOL:automatic]
synonym: "gullet serosa" EXACT [OBOL:automatic]
synonym: "gullet serous membrane" EXACT [OBOL:automatic]
synonym: "oesophagus serosa" RELATED []
synonym: "oesophagus serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of abdominal part of esophagus" EXACT []
synonym: "serosa of gullet" EXACT [OBOL:automatic]
synonym: "serosa of oesophagus" EXACT []
synonym: "serous coat of oesophagus" EXACT []
synonym: "serous membrane of esophagus" EXACT [OBOL:automatic]
synonym: "serous membrane of gullet" EXACT [OBOL:automatic]
synonym: "serous membrane of oesophagus" EXACT [OBOL:automatic]
synonym: "tunica serosa oesophageae" EXACT [FMA:63057, FMA:TA]
xref: FMA:63057
xref: MA:0001571
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus

[Term]
id: UBERON:0001976
name: epithelium of esophagus
namespace: uberon
alt_id: UBERON:FMA_63063-MA_0001565-ZFA_0001499
comment: todo check epithelium types: in FMA: Nonkeratinizing stratified squamous epithelium; mouse has basal and squamous subtypes; in ZFA it is columnar
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelial tissue of esophagus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gullet" EXACT [OBOL:automatic]
synonym: "epithelial tissue of oesophagus" EXACT [OBOL:automatic]
synonym: "epithelium of gullet" EXACT [OBOL:automatic]
synonym: "epithelium of oesophagus" EXACT [OBOL:automatic]
synonym: "esophageal epithelium" EXACT []
synonym: "esophagus epithelial tissue" EXACT [OBOL:automatic]
synonym: "esophagus epithelium" EXACT []
synonym: "gullet epithelial tissue" EXACT [OBOL:automatic]
synonym: "gullet epithelium" EXACT [OBOL:automatic]
synonym: "oesophagus epithelial tissue" EXACT [OBOL:automatic]
synonym: "oesophagus epithelium" RELATED []
xref: BTO:0001578
xref: EFO:0003041
xref: EHDAA2:0001287
xref: EMAPA:16835
xref: FMA:63063
xref: MA:0001565
xref: ncithesaurus:Esophageal_Epithelium
xref: TAO:0001499
xref: ZFA:0001499
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 {source="FMA"} ! esophagus mucosa

[Term]
id: UBERON:0001983
name: crypt of lieberkuhn
namespace: uberon
alt_id: UBERON:FMA_63621-MA_0001535
def: "A gland found in the epithelial lining of the small intestine and colon." [Wikipedia:Intestinal_gland]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
synonym: "intestinal gland" BROAD [Wikipedia:Crypts_of_Lieberkuhn]
synonym: "lieberkuhn crypt" EXACT []
xref: FMA:63621
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg
xref: MA:0001535
xref: ncithesaurus:Crypts_of_the_Lieberkuhn
is_a: UBERON:0000333 ! intestinal gland
relationship: part_of UBERON:0001242 ! intestinal mucosa

[Term]
id: UBERON:0001984
name: crypt of lieberkuhn of large intestine
namespace: uberon
alt_id: UBERON:FMA_63622-MA_0001544
def: "A crypt of lieberkuhn that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "intestinal gland of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal crypt of lieberkuhn" EXACT []
synonym: "large intestine crypt of lieberkuhn" EXACT []
synonym: "large intestine intestinal gland" EXACT [OBOL:automatic]
synonym: "large intestine lieberkuhn crypt" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of large intestine" EXACT [OBOL:automatic]
xref: FMA:63622
xref: MA:0001544
xref: ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine

[Term]
id: UBERON:0002029
name: epithelium of gall bladder
namespace: uberon
alt_id: UBERON:FMA_67711-MA_0001632
def: "the simple columnar epithelial lining of the gall bladder." [MP:0009492]
comment: This class was created automatically from a combination of ontologies
synonym: "biliary epithelium" RELATED []
synonym: "epithelial tissue of gall bladder" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gallbladder" EXACT [OBOL:automatic]
synonym: "epithelium of gallbladder" EXACT [OBOL:automatic]
synonym: "gall bladder epithelial tissue" EXACT [OBOL:automatic]
synonym: "gall bladder epithelium" EXACT []
synonym: "gallbladder epithelial tissue" EXACT [OBOL:automatic]
synonym: "gallbladder epithelium" EXACT [OBOL:automatic]
xref: BTO:0001449
xref: FMA:67711
xref: MA:0001632
xref: ncithesaurus:Gallbladder_Epithelium
relationship: part_of UBERON:0002110 ! gallbladder

[Term]
id: UBERON:0002059
name: submandibular ganglion
namespace: uberon
alt_id: UBERON:FMA_6966-MA_0002470
def: "The submandibular ganglion (or submaxillary ganglion in older texts) is part of the human autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]." [Wikipedia:Submandibular_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Blandin`s ganglion" RELATED [BTO:0001318]
synonym: "ganglion submandibulare" RELATED [BTO:0001318]
synonym: "ganglion submandibulare" RELATED LATIN [Wikipedia:Submandibular_ganglion]
synonym: "lingual ganglion" RELATED [https://sourceforge.net/tracker/index.php?func=detail&aid=2979467&group_id=76834&atid=1205376, MA:0002470]
synonym: "maxillary ganglion" RELATED [MA:0002470]
synonym: "submaxillary ganglion" RELATED [MA:0002470]
xref: BTO:0001318
xref: EHDAA2:0001942
xref: EHDAA:6710
xref: FMA:6966
xref: http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png
xref: MA:0002470
xref: ncithesaurus:Submandibular_Ganglion
relationship: part_of UBERON:0001736 ! submandibular gland

[Term]
id: UBERON:0002106
name: spleen
namespace: uberon
alt_id: UBERON:FMA_7196-MA_0000141-MIAA_0000085-XAO_0000328-ZFA_0000436
def: "Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system.[1] In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron.[2] It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells." [Wikipedia:Spleen]
comment: Taxon notes: Neither hagfish nor lampreys possess what might be considered a discrete and condensed spleen. Hagfish possess dispersed lymphoid tissue within the submucosa of the intestine (96) associated with the portal vein (97), whereas lymphoid tissue is associated with the typhlosole portion of the intestine in lampreys (96) [PMID:20959416]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "splen, lien" RELATED LATIN [Wikipedia:Spleen]
xref: AAO:0010395
xref: BTO:0001281
xref: EFO:0000869
xref: EMAPA:18767
xref: EV:0100055
xref: FMA:7196
xref: GAID:1289
xref: galen:Spleen
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d6/Illu_spleen.jpg/200px-Illu_spleen.jpg
xref: MA:0000141
xref: MAT:0000085
xref: MESH:A.15.382.520.604.713
xref: MIAA:0000085
xref: ncithesaurus:Spleen
xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA
xref: SCTID:181279003
xref: TAO:0000436
xref: VHOG:0000120
xref: XAO:0000328
xref: ZFA:0000436
relationship: develops_from UBERON:0006293 ! spleen primordium
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0002107
name: liver
namespace: uberon
alt_id: UBERON:FMA_7197-MA_0000358-MIAA_0000097-XAO_0000133-ZFA_0000123
def: "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." [BTO:0000759, Wikipedia:Liver]
comment: AO notes: Only ZFA considers this part_of immune system - we weaken this to an overlaps relation, as in general it's only a subset of cells that have clear immune function. Taxon notes: WP: The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates.[7] An organ sometimes referred to as a liver is found associated with the digestive tract of the primitive chordate Amphioxus. However, this is an enzyme secreting gland, not a metabolic organ, and it is unclear how truly homologous it is to the vertebrate liver.
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "jecur, iecer" RELATED LATIN [Wikipedia:Liver]
xref: AAO:0010111
xref: BTO:0000759
xref: EFO:0000887
xref: EHDAA2:0000997
xref: EHDAA:2197
xref: EMAPA:16846
xref: EV:0100089
xref: FMA:7197
xref: GAID:288
xref: galen:Liver
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Leber_Schaf.jpg/200px-Leber_Schaf.jpg
xref: MA:0000358
xref: MAT:0000097
xref: MESH:A.03.620
xref: MIAA:0000097
xref: ncithesaurus:Liver
xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA
xref: SCTID:181268008
xref: TAO:0000123
xref: VHOG:0000257
xref: XAO:0000133
xref: ZFA:0000123
is_a: UBERON:0006925 ! digestive gland
disjoint_from: UBERON:0010264 ! hepatopancreas
relationship: part_of UBERON:0001007 {source="ZFA"} ! digestive system
relationship: part_of UBERON:0002423 {source="ZFA"} ! hepatobiliary system

[Term]
id: UBERON:0002108
name: small intestine
namespace: uberon
alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a>" [FMA:7200, WA:dh, Wikipedia:Small_intestine, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior intestine" RELATED []
synonym: "intestinum tenue" RELATED [BTO:0000651]
synonym: "intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine]
synonym: "mid intestine" RELATED []
synonym: "small bowel" EXACT []
synonym: "small intestine" EXACT []
xref: AAO:0010397
xref: BTO:0000651
xref: EFO:0000841
xref: EV:0100072
xref: FMA:7200
xref: GAID:313
xref: galen:SmallIntestine
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png
xref: MA:0000337
xref: MAT:0000047
xref: MESH:A.03.492.411.620
xref: MIAA:0000047
xref: ncithesaurus:Small_Intestine
xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
xref: SCTID:181250005
xref: TAO:0001323
xref: VHOG:0000055
xref: XAO:0000130
xref: ZFA:0001323
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0002110
name: gallbladder
namespace: uberon
alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208
def: "a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder]
comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988)
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gall bladder" EXACT []
synonym: "vesica fellea; vesica biliaris" RELATED LATIN [Wikipedia:Gallbladder]
xref: AAO:0010114
xref: BTO:0000493
xref: EFO:0000853
xref: EHDAA2:0000699
xref: EHDAA:8062
xref: EMAPA:17202
xref: EV:0100090
xref: FMA:7202
xref: galen:Gallbladder
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Abdomal_organs.svg/200px-Abdomal_organs.svg.png
xref: MA:0000356
xref: MAT:0000072
xref: MESH:A.03.159.439
xref: MIAA:0000072
xref: ncithesaurus:Gallbladder
xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA
xref: SCTID:181269000
xref: TAO:0000208
xref: VHOG:0000221
xref: XAO:0000135
xref: ZFA:0000208
property_value: RO:0002161 NCBITaxon:10114
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: develops_from UBERON:0006242 {evidence="definitional"} ! gall bladder primordium
relationship: part_of UBERON:0001173 ! biliary tree
relationship: part_of UBERON:0002294 ! biliary system

[Term]
id: UBERON:0002112
name: smooth muscle of esophagus
namespace: uberon
alt_id: UBERON:FMA_72025-MA_0001573
def: "A portion of smooth muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "esophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "esophagus smooth muscle" EXACT []
synonym: "esophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet involuntary muscle" EXACT [OBOL:automatic]
synonym: "gullet non-striated muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of esophagus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gullet" EXACT [OBOL:automatic]
synonym: "involuntary muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of esophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gullet" EXACT [OBOL:automatic]
synonym: "non-striated muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "oesophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "oesophagus smooth muscle" RELATED []
synonym: "oesophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: FMA:72025
xref: MA:0001573
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0003832 ! esophagus muscle

[Term]
id: UBERON:0002114
name: duodenum
namespace: uberon
alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "proximal intestine" RELATED [BTO:0000365]
synonym: "upper intestine" RELATED [BTO:0000365]
xref: AAO:0010402
xref: BTO:0000365
xref: EFO:0000851
xref: EHDAA:3830
xref: EHDAA:3937
xref: EMAPA:17178
xref: EMAPA:17193
xref: EMAPA:18661
xref: EMAPA:18852
xref: EV:0100073
xref: FMA:7206
xref: GAID:284
xref: galen:Duodenum
xref: MA:0000338
xref: MAT:0000044
xref: MESH:A.03.492.411.620.270
xref: MIAA:0000044
xref: ncithesaurus:Duodenum
xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA
xref: SCTID:181247007
xref: VHOG:0000052
xref: XAO:0000236
property_value: "dubious_for_taxon" NCBITaxon:7955
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0002115
name: jejunum
namespace: uberon
alt_id: UBERON:FMA_7207-MA_0000340-MIAA_0000045
def: "The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum. [WP,unvetted]." [Wikipedia:Jejunum]
comment: TODO consider ZFA:0001323 mid intestine, see also small intestine
subset: uberon_slim
synonym: "intestinum jejunum" RELATED [BTO:0000657]
synonym: "middle intestine" RELATED [BTO:0000657]
xref: BTO:0000657
xref: EFO:0001333
xref: EMAPA:18666
xref: EMAPA:18932
xref: EV:0100074
xref: FMA:7207
xref: GAID:318
xref: galen:Jejunum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg
xref: MA:0000340
xref: MAT:0000045
xref: MESH:A.03.492.411.620.625
xref: MIAA:0000045
xref: ncithesaurus:Jejunum
xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA
xref: SCTID:181248002
xref: VHOG:0000053
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0002116
name: ileum
namespace: uberon
alt_id: UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237
def: "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]." [Wikipedia:Ileum]
comment: TODO consider ZFA:0000706 posterior intestine, see also colon
subset: uberon_slim
synonym: "distal intestine" RELATED [BTO:0000620]
synonym: "intestinum ileum" RELATED [BTO:0000620]
synonym: "lower intestine" RELATED [BTO:0000620]
xref: AAO:0010403
xref: BTO:0000620
xref: EFO:0001334
xref: EV:0100075
xref: FMA:7208
xref: GAID:315
xref: galen:Ileum
xref: MA:0000339
xref: MAT:0000282
xref: MESH:A.03.492.411.620.484
xref: MIAA:0000282
xref: ncithesaurus:Ileum
xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA
xref: SCTID:181249005
xref: VHOG:0000647
xref: XAO:0000237
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0002294
name: biliary system
namespace: uberon
alt_id: UBERON:FMA_79646-MA_0001273
def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "biliary apparatus" EXACT []
xref: FMA:79646
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: SCTID:361354009
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0002423 ! hepatobiliary system

[Term]
id: UBERON:0002334
name: submandibular duct
namespace: uberon
alt_id: UBERON:FMA_86266-MA_0002698
def: "The submandibular duct (Wharton's duct, submaxillary duct) is one of the salivary ducts. It is about 5 cm. long, and its wall is much thinner than that of the parotid duct. It begins by numerous branches from the deep surface of the gland, and runs forward between the mylohyoideus, hyoglossus, and genioglossus, then between the sublingual gland and the genioglossus, and opens by a narrow orifice on the summit of a small at the side of the frenulum lingu�. On the hyoglossus it lies between the lingual and hypoglossal nerves, but at the anterior border of the muscle it is crossed laterally by the lingual nerve; the terminal branches of the lingual nerve ascend on its medial side. It drains saliva from the submandibular glands and sublingual glands to the sublingual caruncle at the base of the tongue. It was initially described by the English anatomist Thomas Wharton and sometimes referred to by his name. [WP,unvetted]." [Wikipedia:Submandibular_duct]
subset: uberon_slim
synonym: "ductus submaxillaris" RELATED LATIN [Wikipedia:Submandibular_duct]
synonym: "submandibular salivary duct" RELATED []
synonym: "submaxillary duct" RELATED []
xref: BTO:0004556
xref: FMA:86266
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png
xref: MA:0002698
xref: ncithesaurus:Submandibular_Duct
is_a: UBERON:0001837 ! duct of salivary gland
relationship: channels_from UBERON:0001736 ! submandibular gland
relationship: part_of UBERON:0001736 ! submandibular gland

[Term]
id: UBERON:0002372
name: tonsil
namespace: uberon
alt_id: UBERON:FMA_9609-MA_0000143
def: "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
comment: Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
subset: uberon_slim
synonym: "Mandel" RELATED [BTO:0001387]
xref: BTO:0001387
xref: EFO:0001401
xref: EV:0100052
xref: FMA:9609
xref: GAID:341
xref: MA:0000143
xref: MESH:A.03.867.603.925
xref: ncithesaurus:Tonsil
xref: ncithesaurus:Tonsilar_Tissue
xref: ncithesaurus:Tonsillar_Lymphoid_Tissue
xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA
xref: VHOG:0001139
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0001735 ! tonsillar ring

[Term]
id: UBERON:0002373
name: palatine tonsil
namespace: uberon
alt_id: UBERON:FMA_9610-MA_0000775-MIAA_0000291
def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil]
comment: Development notes: tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches[ISBN10:1607950324]
subset: uberon_slim
synonym: "faucial tonsil" EXACT []
synonym: "tonsil" BROAD []
synonym: "tonsilla palatina" RELATED LATIN [Wikipedia:Palatine_tonsil]
xref: BTO:0004714
xref: EFO:0001977
xref: EV:0100393
xref: FMA:9610
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Illu_mouth.jpg/200px-Illu_mouth.jpg
xref: MA:0000775
xref: MAT:0000291
xref: MIAA:0000291
xref: ncithesaurus:Palatine_Tonsil
xref: SCTID:265787001
xref: VHOG:0001140
is_a: UBERON:0002372 ! tonsil

[Term]
id: UBERON:0002394
name: bile duct
namespace: uberon
alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
comment: The path is as follows: Bile canaliculi ? Canals of Hering ? interlobular bile ducts ? intrahepatic bile ducts ? left and right hepatic ducts merge to form ? common hepatic duct exits liver and joins ? cystic duct (from gall bladder) forming ? common bile duct ? joins with pancreatic duct ? forming ampulla of Vater ? enters duodenum [WP]
subset: uberon_slim
synonym: "gall duct" RELATED [BTO:0000122]
synonym: "hepatic duct" RELATED []
xref: AAO:0011019
xref: BTO:0000122
xref: EHDAA2:0000741
xref: EV:0100091
xref: FMA:9706
xref: GAID:280
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000354
xref: MESH:A.03.159.183
xref: ncithesaurus:Bile_Duct
xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
xref: SCTID:276157007
xref: VHOG:0000212
xref: XAO:0000134
is_a: UBERON:0003928 ! digestive system duct
relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum
relationship: part_of UBERON:0001173 {source="MA"} ! biliary tree
relationship: part_of UBERON:0002294 ! biliary system

[Term]
id: UBERON:0002399
name: lesser omentum
namespace: uberon
alt_id: UBERON:FMA_9715-MA_0001623
def: "The lesser omentum (small omentum; gastrohepatic omentum) is the double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]." [Wikipedia:Lesser_omentum]
comment: editor note: exact part of and develops from relationships need to be established
subset: uberon_slim
synonym: "omentum minus" RELATED LATIN [Wikipedia:Lesser_omentum]
xref: EHDAA2:0000991
xref: EHDAA:4858
xref: EMAPA:17890
xref: EMAPA:18909
xref: EV:0100086
xref: FMA:9715
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray984.png/200px-Gray984.png
xref: MA:0001623
xref: ncithesaurus:Lesser_Omentum
xref: SCTID:362712005
xref: VHOG:0000357
is_a: UBERON:0009034 ! stomach region
relationship: develops_from UBERON:0005626 {source="Wikipedia"} ! ventral mesogastrium
relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium

[Term]
id: UBERON:0002423
name: hepatobiliary system
namespace: uberon
alt_id: UBERON:MA_0000324-MIAA_0000024-XAO_0000132-ZFA_0000036
def: "The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct" [GO:0061008, Wikipedia:Hepatobiliary_system]
subset: uberon_slim
subset: vertebrate_core
synonym: "hepaticobiliary system" EXACT [GO:0061008]
synonym: "liver and biliary system" EXACT []
synonym: "liver/biliary system" RELATED []
xref: AAO:0011056
xref: EFO:0000800
xref: EHDAA2:0000998
xref: EHDAA:2189
xref: EMAPA:16840
xref: EV:0100088
xref: MA:0000324
xref: MAT:0000024
xref: MIAA:0000024
xref: ncithesaurus:Hepatobiliary_System
xref: TAO:0000036
xref: VHOG:0000294
xref: XAO:0000132
xref: ZFA:0000036
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0002424
name: oral epithelium
namespace: uberon
alt_id: UBERON:MA_0000344-ZFA_0000816
def: "The epithelium that lines the oral cavity.  The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds." [ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24]
comment: Editor note: consider including separate class for developmental structure. Development notes: the avian oral epithelium has the developmental capacity to initiate tooth developmental programs with underlying grafts of non-avian oral ectomesenchyme [PMID:16488870]
subset: vertebrate_core
xref: AAO:0010357
xref: BTO:0001775
xref: EHDAA2:0001325
xref: EHDAA:2187
xref: EMAPA:16839
xref: EMAPA:26942
xref: MA:0000344
xref: ncithesaurus:Oral_Cavity_Epithelium
xref: TAO:0000816
xref: VHOG:0000187
xref: XAO:0003201
xref: ZFA:0000816
is_a: UBERON:0003929 ! gut epithelium
relationship: adjacent_to UBERON:0000167 {source="AAO-modified"} ! oral cavity
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0003729 ! mouth mucosa

[Term]
id: UBERON:0002447
name: palatine gland
namespace: uberon
alt_id: UBERON:MA_0001584-FMA_71616
def: "The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]." [Wikipedia:Palatine_gland]
subset: uberon_slim
synonym: "palatine glands set" EXACT []
synonym: "palatine salivary gland" EXACT []
synonym: "salivary palatine gland" EXACT []
xref: FMA:59795
xref: MA:0001584
xref: ncithesaurus:Palatine_Salivary_Gland
xref: SCTID:13604002
is_a: UBERON:0001830 ! minor salivary gland

[Term]
id: UBERON:0002448
name: fungiform papilla
namespace: uberon
alt_id: UBERON:MA_0001595-FMA_71448
def: "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted]." [Wikipedia:Fungiform_papilla]
subset: uberon_slim
synonym: "fungiform papilla of tongue" EXACT [FMA:54821]
synonym: "fungiform papillae" EXACT PLURAL []
synonym: "fungiform papillae set" EXACT PLURAL []
synonym: "papillae fungiformes" RELATED LATIN [Wikipedia:Fungiform_papilla]
xref: EMAPA:18657
xref: FMA:54821
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Gray1014.png/200px-Gray1014.png
xref: MA:0001595
xref: ncithesaurus:Fungiform_Papilla
xref: NIF_GrossAnatomy:birnlex_4106
xref: SCTID:80673002
is_a: UBERON:0001726 {source="MA"} ! papilla of tongue

[Term]
id: UBERON:0002467
name: filiform papilla
namespace: uberon
alt_id: UBERON:MA_0002678-FMA_71447
def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [Wikipedia:Filiform_papilla]
subset: uberon_slim
synonym: "filiform papilla of tongue" EXACT [FMA:54820]
synonym: "filiform papillae" EXACT []
synonym: "filiform papillae set" EXACT []
synonym: "papillae filiformes" RELATED LATIN [Wikipedia:Filiform_papilla]
xref: EMAPA:18655
xref: EMAPA:18873
xref: FMA:54820
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1016.png/200px-Gray1016.png
xref: MA:0002678
xref: ncithesaurus:Filiform_Papilla
xref: NIF_GrossAnatomy:birnlex_4104
xref: SCTID:58743008
is_a: UBERON:0001726 ! papilla of tongue

[Term]
id: UBERON:0002468
name: foliate papilla
namespace: uberon
alt_id: UBERON:MA_0002679-FMA_71450
def: "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted]." [Wikipedia:Foliate_papilla]
subset: uberon_slim
synonym: "foliate papilla of tongue" EXACT [FMA:54823]
synonym: "foliate papillae" EXACT []
synonym: "foliate papillae set" EXACT []
synonym: "papillae foliatae" RELATED LATIN [Wikipedia:Foliate_papilla]
xref: FMA:54823
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png
xref: MA:0002679
xref: ncithesaurus:Foliate_Papilla
xref: NIF_GrossAnatomy:birnlex_4105
xref: SCTID:362098003
is_a: UBERON:0001726 ! papilla of tongue

[Term]
id: UBERON:0002469
name: esophagus mucosa
namespace: uberon
alt_id: UBERON:0003345
alt_id: UBERON:MA_0002680-FMA_62996
def: "A mucosa that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal mucosa" EXACT []
synonym: "esophagus mucosa" EXACT [FMA:62996]
synonym: "esophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "esophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "esophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa of organ" EXACT [OBOL:automatic]
synonym: "gullet mucous membrane" EXACT [OBOL:automatic]
synonym: "gullet organ mucosa" EXACT [OBOL:automatic]
synonym: "lamina muscularis mucosae oesophageae" EXACT [FMA:62996, FMA:TA]
synonym: "mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oesophagus" EXACT [OBOL:automatic]
synonym: "mucous membrane of esophagus" EXACT []
synonym: "mucous membrane of gullet" EXACT [OBOL:automatic]
synonym: "mucous membrane of oesophagus" EXACT [FMA:62996]
synonym: "muscularis mucosae of oesophagus" RELATED INCONSISTENT [FMA:62996]
synonym: "oesophageal mucosa" EXACT [FMA:62996]
synonym: "oesophagus mucosa" EXACT []
synonym: "oesophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "oesophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "oesophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "organ mucosa of gullet" EXACT [OBOL:automatic]
synonym: "organ mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "tunica mucosa esophagi" EXACT []
synonym: "tunica mucosa oesophageae" EXACT [FMA:62996, FMA:TA]
synonym: "tunica mucosa oesophagi" EXACT []
synonym: "tunica mucosa oesophagi" RELATED [BTO:0002859]
xref: BTO:0002859
xref: EMAPA:26981
xref: EMAPA:26991
xref: FMA:62996
xref: MA:0002680
xref: ncithesaurus:Esophageal_Mucosa
xref: SCTID:362127004
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus

[Term]
id: UBERON:0002487
name: tooth cavity
namespace: uberon
alt_id: UBERON:MA_0002792-FMA_55660
def: "." [Wikipedia:Tooth_cavity]
subset: uberon_slim
synonym: "cavitas dentis" EXACT []
synonym: "cavitas pulparis" EXACT [FMA:55660, FMA:TA]
synonym: "cavity of tooth" RELATED [MA:0002792]
synonym: "pulp cavity" EXACT []
synonym: "pulp cavity of tooth" EXACT []
synonym: "tooth pulp cavity" RELATED [MA:0002792]
xref: FMA:55660
xref: MA:0002792
xref: MESH:A.14.254.900.265
xref: SCTID:362105008
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0002926
name: gustatory epithelium
namespace: uberon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4099-FMA_62412
comment: editor note - see also epithelium of tongue and subclasses
xref: FMA:62412
xref: NIF_GrossAnatomy:birnlex_4099
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003118
name: aortic arch 1
namespace: uberon
alt_id: UBERON:0004371
alt_id: UBERON:ZFA_0005005-XAO_0000342
def: "the vessels formed within the first pair of branchial arches in embryogenesis" [MP:0006356]
comment: ZFA: The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aortas. // Disappears early in development in tetrapods
subset: vertebrate_core
synonym: "1st arch artery" EXACT [EMAPA:16685]
synonym: "AA1" EXACT [ZFA:0005005]
synonym: "first aortic arch" EXACT [XAO:0000342]
synonym: "first branchial arch artery" EXACT []
synonym: "mandibular aortic arch" EXACT [ZFA:0005005]
xref: AAO:0010415
xref: EHDAA2:0000007
xref: EMAPA:16202
xref: EMAPA:16685
xref: SCTID:308774003
xref: TAO:0005005
xref: VHOG:0000149
xref: XAO:0000342
xref: ZFA:0005005
is_a: UBERON:0004363 ! aortic arch

[Term]
id: UBERON:0003119
name: aortic arch 2
namespace: uberon
alt_id: UBERON:0004372
alt_id: UBERON:ZFA_0005006-XAO_0000343
def: "The first and second arches disappear early, but the dorsal end of the second gives origin to the stapedial artery, a vessel which atrophies in humans but persists in some mammals. It passes through the ring of the stapes and divides into supraorbital, infraorbital, and mandibular branches which follow the three divisions of the trigeminal nerve. The infraorbital and mandibular arise from a common stem, the terminal part of which anastomoses with the external carotid. On the obliteration of the stapedial artery this anastomosis enlarges and forms the internal maxillary artery, and the branches of the stapedial artery are now branches of this vessel. The common stem of the infraorbital and mandibular branches passes between the two roots of the auriculotemporal nerve and becomes the middle meningeal artery; the original supraorbital branch of the stapedial is represented by the orbital twigs of the middle meningeal[WP]." [Wikipedia:Aortic_arches#Arches_1_and_2]
subset: vertebrate_core
synonym: "2nd arch artery" EXACT [EHDAA2:0000051]
synonym: "AA2" EXACT [ZFA:0005006]
synonym: "hyoid aortic arch" EXACT [ZFA:0005006]
synonym: "second aortic arch" EXACT [XAO:0000343]
synonym: "second branchial arch artery" EXACT []
xref: AAO:0010418
xref: EHDAA2:0000051
xref: EMAPA:16203
xref: EMAPA:16686
xref: SCTID:308775002
xref: TAO:0005006
xref: VHOG:0000148
xref: XAO:0000343
xref: ZFA:0005006
is_a: UBERON:0004363 ! aortic arch

[Term]
id: UBERON:0003120
name: aortic arch 3
namespace: uberon
alt_id: UBERON:0004352
alt_id: UBERON:ZFA_0005007-XAO_0000344
def: "The third aortic arch constitutes the commencement of the internal carotid artery, and is therefore named the carotid arch[WP]." [Wikipedia:Aortic_arches#Arch_3]
subset: vertebrate_core
synonym: "3rd arch artery" EXACT [EHDAA2:0000070]
synonym: "AA3" EXACT [ZFA:0005007]
synonym: "carotid arch" EXACT [Wikipedia:Aortic_arches#Arch_3]
synonym: "third aortic arch" EXACT [XAO:0000344]
synonym: "third branchial arch artery" EXACT []
xref: AAO:0010419
xref: EHDAA2:0000070
xref: EMAPA:16687
xref: SCTID:308776001
xref: TAO:0005007
xref: VHOG:0000147
xref: XAO:0000344
xref: ZFA:0005007
is_a: UBERON:0004363 ! aortic arch

[Term]
id: UBERON:0003121
name: aortic arch 4
namespace: uberon
alt_id: UBERON:0004350
alt_id: UBERON:ZFA_0005008-XAO_0000355
def: "The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP]." [Wikipedia:Aortic_arches#Arch_4]
comment: Development notes: Normally, the left fourth arch becomes the aortic arch, the right fourth arch contributes to the innominate artery[http://emedicine.medscape.com/article/899609-overview] in birds it is the right fourth arch which forms the permanent aorta // proximal right subclavian
subset: vertebrate_core
synonym: "4th arch artery" EXACT [EHDAA2:0000087]
synonym: "AA4" EXACT [ZFA:0005008]
synonym: "fourth aortic arch" EXACT [XAO:0000355]
synonym: "fourth branchial arch artery" EXACT []
synonym: "systemic arch" RELATED [ISBN10:0073040584, XAO:0000355]
xref: AAO:0010420
xref: EHDAA2:0000087
xref: EMAPA:17004
xref: SCTID:308777005
xref: TAO:0005008
xref: VHOG:0000146
xref: XAO:0000355
xref: ZFA:0005008
is_a: UBERON:0004363 ! aortic arch

[Term]
id: UBERON:0003122
name: aortic arch 5
namespace: uberon
alt_id: UBERON:ZFA_0005009-XAO_0000352
def: "The fifth arch disappears on both sides[WP]." [Wikipedia:Aortic_arches#Arch_5]
subset: vertebrate_core
synonym: "AA5" EXACT [ZFA:0005009]
synonym: "fifth aortic arch" EXACT [XAO:0000352]
xref: AAO:0010421
xref: SCTID:308778000
xref: TAO:0005009
xref: VHOG:0000145
xref: XAO:0000352
xref: ZFA:0005009
is_a: UBERON:0004363 ! aortic arch

[Term]
id: UBERON:0003123
name: aortic arch 6
namespace: uberon
alt_id: UBERON:0004351
alt_id: UBERON:ZFA_0005016-XAO_0000353
def: "The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP]." [Wikipedia:Aortic_arches#Arch_6]
comment: Development notes: the distal left sixth arch becomes the ductus arteriosus, the proximal sixth arches bilaterally contribute to the proximal branch pulmonary arteries[http://emedicine.medscape.com/article/899609-overview]
subset: vertebrate_core
synonym: "6th arch artery" EXACT [EMAPA:17005]
synonym: "AA6" EXACT [ZFA:0005016]
synonym: "pulmonary arch" RELATED [ISBN10:0073040584]
synonym: "sixth aortic arch" EXACT [XAO:0000353]
synonym: "sixth branchial arch artery" EXACT []
xref: AAO:0010422
xref: EHDAA2:0000102
xref: EMAPA:17005
xref: SCTID:308779008
xref: TAO:0005016
xref: VHOG:0000144
xref: XAO:0000353
xref: ZFA:0005016
is_a: UBERON:0004363 ! aortic arch

[Term]
id: UBERON:0003132
name: arthropod hypopharynx
namespace: uberon
def: "A median tonguelike structure arising from the mouth." [http://www.britannica.com/EBchecked/topic/279974/hypopharynx]
subset: uberon_slim
xref: FBbt:00005751
xref: HAO:0000409
xref: TGMA:0000090
relationship: part_of UBERON:0006562 ! pharynx

[Term]
id: UBERON:0003216
name: hard palate
namespace: uberon
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "anterior portion of the palate consisting of bone and mucous membranes[GO]." [GO:0060022, Wikipedia:Hard_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hard palate" EXACT []
synonym: "palatum durum" RELATED LATIN [Wikipedia:Hard_palate]
xref: EMAPA:18952
xref: FMA:55023
xref: GAID:221
xref: MA:0002477
xref: MAT:0000161
xref: MESH:A.02.835.232.781.324.502.660
xref: MIAA:0000161
xref: ncithesaurus:Hard_Palate
xref: SCTID:245778002
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0003258
name: endoderm of foregut
namespace: uberon
def: "An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "foregut endoderm" EXACT [OBOL:automatic]
xref: EHDAA2:0000566
xref: EHDAA:524
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0003259
name: endoderm of midgut
namespace: uberon
def: "An endoderm that is part of a midgut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "midgut endoderm" EXACT [OBOL:automatic]
xref: EHDAA:987
xref: EMAPA:16257
xref: RETIRED_EHDAA2:0001194
xref: VHOG:0001080
relationship: part_of UBERON:0001045 ! midgut

[Term]
id: UBERON:0003260
name: endoderm of hindgut
namespace: uberon
def: "An endoderm that is part of a hindgut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "hindgut endoderm" EXACT [OBOL:automatic]
xref: EHDAA:979
xref: RETIRED_EHDAA2:0000781
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0003267
name: tooth of upper jaw
namespace: uberon
def: "A calcareous tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "calcareous tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "calcareous tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch calcareous tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch dentine containing tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "upper jaw calcareous tooth" EXACT [OBOL:automatic]
synonym: "upper jaw dentine containing tooth" EXACT [OBOL:automatic]
synonym: "upper jaw tooth" EXACT [OBOL:automatic]
synonym: "upper jaw vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of upper jaw" EXACT [OBOL:automatic]
xref: EHDAA2:0002129
xref: EHDAA:8045
xref: EMAPA:17938
xref: MA:0001909
xref: ncithesaurus:Upper_Jaw_Tooth
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0009680 ! set of upper jaw teeth

[Term]
id: UBERON:0003268
name: tooth of lower jaw
namespace: uberon
def: "A calcareous tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "calcareous tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic]
synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic]
synonym: "lower jaw tooth" EXACT [OBOL:automatic]
synonym: "lower jaw vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch calcareous tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch dentine containing tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of ventral mandibular arch" EXACT [OBOL:automatic]
xref: EHDAA2:0001029
xref: EHDAA:8009
xref: EMAPA:17917
xref: MA:0001907
xref: ncithesaurus:Lower_Jaw_Tooth
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0009679 ! set of lower jaw teeth

[Term]
id: UBERON:0003273
name: skeletal muscle of tongue
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0002065
xref: EHDAA:9146
xref: EMAPA:17883
xref: EMAPA:18879
xref: MA:0001596
xref: ncithesaurus:Tongue_Skeletal_Muscle_Tissue
xref: VHOG:0001390
relationship: part_of UBERON:0000378 ! tongue muscle
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003281
name: mesentery of stomach
namespace: uberon
def: "The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium]
comment: todo - check primitive vs developed
synonym: "mesentery of ventriculus" EXACT [OBOL:automatic]
synonym: "mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium]
synonym: "mesogastium" EXACT [MA:0001617]
synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
synonym: "stomach mesentery" EXACT [Obol:obol]
synonym: "ventriculus mesentery" EXACT [OBOL:automatic]
xref: EHDAA2:0001922
xref: EHDAA:2999
xref: EMAPA:17024
xref: EMAPA:18902
xref: MA:0001617
xref: SCTID:261623000
xref: VHOG:0000358
is_a: UBERON:0004854 {source="MA"} ! gastrointestinal system mesentery
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 {source="MA"} ! stomach

[Term]
id: UBERON:0003283
name: mesentery of oesophagus
namespace: uberon
def: "A mesentery that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus mesentery" EXACT [OBOL:automatic]
synonym: "gullet mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of esophagus" EXACT [OBOL:automatic]
synonym: "mesentery of gullet" EXACT [OBOL:automatic]
synonym: "oesophagus mesentery" EXACT [OBOL:automatic]
xref: EHDAA2:0001288
xref: EHDAA:2943
xref: EMAPA:16836
xref: EMAPA:18864
xref: MA:0001569
xref: VHOG:0000415
is_a: UBERON:0001975 ! serosa of esophagus
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0003284
name: mesentery of midgut
namespace: uberon
def: "A mesentery that is part of a midgut [Obol]." [OBOL:automatic]
synonym: "midgut mesentery" EXACT [OBOL:automatic]
xref: EHDAA2:0001202
xref: EHDAA:3031
xref: EMAPA:16721
xref: EMAPA:17039
xref: EMAPA:17045
xref: EMAPA:17197
xref: VHOG:0000413
relationship: part_of UBERON:0001045 ! midgut

[Term]
id: UBERON:0003286
name: duodenum of foregut
namespace: uberon
def: "A duodenum that is part of a foregut [Obol]." [OBOL:automatic]
synonym: "foregut duodenum" EXACT [OBOL:automatic]
xref: EHDAA2:0000560
xref: EHDAA:3830
xref: EMAPA:17178
is_a: UBERON:0002114 ! duodenum
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0003287
name: duodenum of midgut
namespace: uberon
def: "A duodenum that is part of a midgut [Obol]." [OBOL:automatic]
synonym: "midgut duodenum" EXACT [OBOL:automatic]
xref: EHDAA2:0001189
xref: EHDAA:3937
xref: EMAPA:17193
is_a: UBERON:0002114 ! duodenum
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001045 ! midgut
relationship: part_of UBERON:0001045 ! midgut

[Term]
id: UBERON:0003293
name: gland of oral region
namespace: uberon
def: "A gland that is part of a oral opening [Obol]." [OBOL:automatic]
synonym: "gland of oral opening" EXACT [OBOL:automatic]
synonym: "gland of oral part of face" EXACT [OBOL:automatic]
synonym: "gland of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "oral opening gland" EXACT [OBOL:automatic]
synonym: "oral part of face gland" EXACT [OBOL:automatic]
synonym: "oral region gland" EXACT [OBOL:automatic]
synonym: "subdivision of mouth gland" EXACT [OBOL:automatic]
xref: EHDAA2:0001327
xref: EHDAA:2181
xref: EMAPA:16572
xref: EMAPA:16723
xref: VHOG:0000652
is_a: UBERON:0010047 ! oral gland
relationship: part_of UBERON:0000166 ! oral opening

[Term]
id: UBERON:0003294
name: gland of foregut
namespace: uberon
def: "A gland that is part of a foregut [Obol]." [OBOL:automatic]
synonym: "foregut gland" EXACT [OBOL:automatic]
xref: EHDAA2:0000567
xref: EHDAA:950
xref: EMAPA:16557
xref: VHOG:0000650
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0003295
name: pharyngeal gland
namespace: uberon
def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [Biology-Online_Dictionary:http://www.biology-online.org/dictionary/]
subset: organ_slim
synonym: "glandulae pharyngeae" RELATED [BTO:0004849]
synonym: "pharynx gland" EXACT [EHDAA2:0001461]
xref: BTO:0004849
xref: EHDAA2:0001461
xref: EHDAA:2967
xref: FMA:55075
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0001042 {source="BTO"} ! chordate pharynx

[Term]
id: UBERON:0003317
name: mesenchyme of incisor
namespace: uberon
def: "A mesenchyme that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "incisor mesenchyme" EXACT [OBOL:automatic]
synonym: "incisor tooth mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of incisor tooth" EXACT [OBOL:automatic]
xref: EHDAA:8015
xref: EHDAA:8051
xref: EMAPA:17920
xref: EMAPA:17941
relationship: part_of UBERON:0001098 ! incisor tooth

[Term]
id: UBERON:0003329
name: submucosa of anal canal
namespace: uberon
def: "A submucosa that is part of an anal canal [Obol]." [OBOL:automatic]
synonym: "anal canal submucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically submucosa" EXACT [OBOL:automatic]
synonym: "anal region submucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "submucosa of anal region" EXACT [OBOL:automatic]
synonym: "submucosa of anatomical anal canal" EXACT [OBOL:automatic]
xref: EMAPA:27535
xref: FMA:85399
xref: SCTID:7892006
is_a: UBERON:0001208 ! submucosa of large intestine
relationship: part_of UBERON:0000159 ! anal canal

[Term]
id: UBERON:0003330
name: submucosa of rectum
namespace: uberon
def: "A submucosa that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectal submucosa" EXACT [FMA:15034]
synonym: "rectum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27083
xref: EMAPA:27323
xref: FMA:15034
xref: SCTID:71683001
is_a: UBERON:0001208 ! submucosa of large intestine
relationship: part_of UBERON:0001052 ! rectum

[Term]
id: UBERON:0003331
name: submucosa of colon
namespace: uberon
def: "A submucosa that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon submucosa" EXACT [OBOL:automatic]
synonym: "colonic submucosa" EXACT [FMA:14985]
synonym: "large bowel submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of large bowel" EXACT [OBOL:automatic]
xref: EMAPA:27379
xref: FMA:14985
xref: SCTID:61647009
is_a: UBERON:0001208 ! submucosa of large intestine
relationship: part_of UBERON:0001155 ! colon

[Term]
id: UBERON:0003332
name: submucosa of duodenum
namespace: uberon
def: "A submucosa that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "doudenal submucosa" EXACT [FMA:14943]
synonym: "duodenal submucosa" EXACT [FMA:14943]
synonym: "duodenum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27239
xref: FMA:14943
xref: SCTID:76519004
is_a: UBERON:0001205 ! submucosa of small intestine
relationship: part_of UBERON:0002114 ! duodenum

[Term]
id: UBERON:0003333
name: submucosa of jejunum
namespace: uberon
def: "A submucosa that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal submucosa" EXACT [FMA:14950]
synonym: "jejunum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27111
xref: EMAPA:27351
xref: FMA:14950
xref: SCTID:70192009
is_a: UBERON:0001205 ! submucosa of small intestine
relationship: part_of UBERON:0002115 ! jejunum

[Term]
id: UBERON:0003334
name: serosa of rectum
namespace: uberon
def: "A serous membrane that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectal serosa" EXACT [FMA:15039]
synonym: "rectum serosa" EXACT [OBOL:automatic]
synonym: "rectum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of rectum" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of rectum" EXACT [FMA:15039]
xref: EMAPA:27087
xref: EMAPA:27331
xref: FMA:15039
is_a: UBERON:0001209 ! serosa of large intestine
relationship: part_of UBERON:0001052 ! rectum

[Term]
id: UBERON:0003335
name: serosa of colon
namespace: uberon
def: "A serous membrane that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon serosa" EXACT [OBOL:automatic]
synonym: "colon serous membrane" EXACT [OBOL:automatic]
synonym: "colonic serosa" EXACT [FMA:14990]
synonym: "large bowel serosa" EXACT [OBOL:automatic]
synonym: "large bowel serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of large bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of colon" EXACT [OBOL:automatic]
synonym: "serous membrane of large bowel" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of colon" EXACT [FMA:14990]
xref: EMAPA:27387
xref: FMA:14990
xref: SCTID:90132000
is_a: UBERON:0001209 ! serosa of large intestine
relationship: part_of UBERON:0001155 ! colon

[Term]
id: UBERON:0003336
name: serosa of duodenum
namespace: uberon
def: "A serous membrane that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "doudenal serosa" EXACT [FMA:14948]
synonym: "duodenal serosa" EXACT [FMA:14948]
synonym: "duodenum serosa" EXACT [OBOL:automatic]
synonym: "duodenum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of duodenum" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of duodenum" EXACT [FMA:14948]
xref: EMAPA:27247
xref: FMA:14948
xref: SCTID:1236009
is_a: UBERON:0001206 ! serosa of small intestine
relationship: part_of UBERON:0002114 ! duodenum

[Term]
id: UBERON:0003337
name: serosa of jejunum
namespace: uberon
def: "A serous membrane that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal serosa" EXACT [FMA:14955]
synonym: "jejunum serosa" EXACT [OBOL:automatic]
synonym: "jejunum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of jejunum" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of jejunum" EXACT [FMA:14955]
xref: EMAPA:27115
xref: EMAPA:27359
xref: FMA:14955
is_a: UBERON:0001206 ! serosa of small intestine
relationship: part_of UBERON:0002115 ! jejunum

[Term]
id: UBERON:0003342
name: mucosa of anal canal
namespace: uberon
def: "A mucosa that is part of an anal canal [Obol]." [OBOL:automatic]
synonym: "anal canal mucosa" EXACT [OBOL:automatic]
synonym: "anal canal mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal canal mucous membrane" EXACT [OBOL:automatic]
synonym: "anal canal organ mucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucous membrane" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically organ mucosa" EXACT [OBOL:automatic]
synonym: "anal mucosa" EXACT [FMA:74654]
synonym: "anal mucous membrane" EXACT [FMA:74654]
synonym: "anal region mucosa" EXACT [OBOL:automatic]
synonym: "anal region mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal region mucous membrane" EXACT [OBOL:automatic]
synonym: "anal region organ mucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucosa of organ" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucous membrane" EXACT [OBOL:automatic]
synonym: "anatomical anal canal organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucosa of anal region" EXACT [OBOL:automatic]
synonym: "mucosa of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal canal" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal region" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal canal" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal region" EXACT [OBOL:automatic]
synonym: "mucous membrane of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal canal" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal region" EXACT [OBOL:automatic]
synonym: "organ mucosa of anatomical anal canal" EXACT [OBOL:automatic]
xref: EMAPA:27531
xref: FMA:74654
xref: ncithesaurus:Anal_Mucosa
xref: SCTID:362170004
is_a: UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0000159 ! anal canal

[Term]
id: UBERON:0003343
name: mucosa of oral region
namespace: uberon
def: "A mucosa that is part of a oral opening [Obol]." [OBOL:automatic]
synonym: "mucosa of oral opening" EXACT [OBOL:automatic]
synonym: "mucosa of oral part of face" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral opening" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral part of face" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral region" EXACT [OBOL:automatic]
synonym: "mucosa of organ of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral opening" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral part of face" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral region" EXACT [OBOL:automatic]
synonym: "mucous membrane of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "oral opening mucosa" EXACT [OBOL:automatic]
synonym: "oral opening mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral opening mucous membrane" EXACT [OBOL:automatic]
synonym: "oral opening organ mucosa" EXACT [OBOL:automatic]
synonym: "oral part of face mucosa" EXACT [OBOL:automatic]
synonym: "oral part of face mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral part of face mucous membrane" EXACT [OBOL:automatic]
synonym: "oral part of face organ mucosa" EXACT [OBOL:automatic]
synonym: "oral region mucosa" EXACT [OBOL:automatic]
synonym: "oral region mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral region mucous membrane" EXACT [OBOL:automatic]
synonym: "oral region organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral opening" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral part of face" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral region" EXACT [OBOL:automatic]
synonym: "organ mucosa of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucosa" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "subdivision of mouth organ mucosa" EXACT [OBOL:automatic]
xref: EMAPA:26937
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0000166 ! oral opening

[Term]
id: UBERON:0003346
name: mucosa of rectum
namespace: uberon
def: "A mucosa that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of rectum" EXACT [OBOL:automatic]
synonym: "mucous membrane of rectum" EXACT [OBOL:automatic]
synonym: "organ mucosa of rectum" EXACT [OBOL:automatic]
synonym: "rectal mucosa" EXACT [FMA:15033]
synonym: "rectal mucous membrane" EXACT [FMA:15033]
synonym: "rectum mucosa" EXACT [OBOL:automatic]
synonym: "rectum mucosa of organ" EXACT [OBOL:automatic]
synonym: "rectum mucous membrane" EXACT [OBOL:automatic]
synonym: "rectum organ mucosa" EXACT [OBOL:automatic]
xref: EMAPA:27081
xref: EMAPA:27319
xref: FMA:15033
xref: SCTID:362167003
is_a: UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001052 ! rectum

[Term]
id: UBERON:0003351
name: pharyngeal epithelium
namespace: uberon
def: "An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic]
synonym: "epithelium of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "pharynx epithelium" EXACT [OBOL:automatic]
xref: EMAPA:16708
xref: MA:0002725
xref: RETIRED_EHDAA2:0001460
xref: TAO:0001174
xref: XAO:0003202
xref: ZFA:0001174
is_a: UBERON:0003929 ! gut epithelium
relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm
relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx

[Term]
id: UBERON:0003352
name: epithelium of midgut
namespace: uberon
synonym: "epithelial tissue of midgut" EXACT [OBOL:automatic]
synonym: "midgut epithelial tissue" EXACT [OBOL:automatic]
synonym: "midgut epithelium" EXACT [BTO:0005053]
synonym: "midgut epithelium" EXACT [OBOL:automatic]
xref: BTO:0005053
xref: EHDAA2:0001195
xref: EMAPA:16569
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001045 {source="BTO"} ! midgut

[Term]
id: UBERON:0003353
name: epithelium of hindgut
namespace: uberon
def: "An epithelium that is part of a hindgut [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic]
synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic]
synonym: "hindgut epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000782
xref: EMAPA:16717
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0003354
name: epithelium of rectum
namespace: uberon
def: "An epithelium that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of rectum" EXACT [OBOL:automatic]
synonym: "rectal epithelium" EXACT [FMA:17510]
synonym: "rectum epithelial tissue" EXACT [OBOL:automatic]
synonym: "rectum epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001594
xref: EMAPA:17898
xref: FMA:17510
xref: VHOG:0001037
xref: WBbt:0005800
is_a: UBERON:0001278 ! epithelium of large intestine
relationship: part_of UBERON:0001052 ! rectum

[Term]
id: UBERON:0003355
name: epithelium of incisor
namespace: uberon
def: "An epithelium that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic]
synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic]
synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic]
synonym: "incisor epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor epithelium" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17919
xref: EMAPA:17940
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001098 ! incisor tooth

[Term]
id: UBERON:0003357
name: epithelium of tongue
namespace: uberon
def: "An epithelium that is part of a tongue [Obol]." [OBOL:automatic]
comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies.
synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic]
synonym: "lingual epithelium" RELATED [BTO:0000992]
synonym: "tongue epithelial tissue" EXACT [OBOL:automatic]
synonym: "tongue epithelium" EXACT [OBOL:automatic]
xref: BTO:0000992
xref: EHDAA2:0004598
xref: EMAPA:17881
xref: EMAPA:18872
xref: MA:0001592
xref: ncithesaurus:Tongue_Epithelium
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003358
name: epithelium of soft palate
namespace: uberon
def: "An epithelium that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "soft palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18950
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0003359
name: epithelium of submandibular gland
namespace: uberon
def: "An epithelium that is part of a submandibular gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of submandibular gland" EXACT [OBOL:automatic]
synonym: "submandibular gland duct epithelium" RELATED [BTO:0004557]
synonym: "submandibular gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "submandibular gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0004557
xref: EMAPA:18813
xref: VHOG:0000989
is_a: UBERON:0004809 ! salivary gland epithelium
relationship: part_of UBERON:0001736 ! submandibular gland

[Term]
id: UBERON:0003360
name: epithelium of parotid gland
namespace: uberon
def: "An epithelium that is part of a parotid gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of parotid gland" EXACT [OBOL:automatic]
synonym: "epithelium of parotid" EXACT [OBOL:automatic]
synonym: "epithelium of parotid gland" EXACT [OBOL:automatic]
synonym: "parotid epithelial tissue" EXACT [OBOL:automatic]
synonym: "parotid epithelium" EXACT [OBOL:automatic]
synonym: "parotid gland duct epithelium" RELATED [BTO:0004555]
synonym: "parotid gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "parotid gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0004555
xref: EMAPA:18538
xref: VHOG:0001434
is_a: UBERON:0004809 ! salivary gland epithelium
relationship: part_of UBERON:0001831 ! parotid gland

[Term]
id: UBERON:0003361
name: epithelium of sublingual gland
namespace: uberon
def: "An epithelium that is part of a sublingual gland [Obol]." [OBOL:automatic]
synonym: "ductus sublingualis epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus sublingualis epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "epithelial tissue of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sublingual gland" EXACT [OBOL:automatic]
synonym: "epithelium of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "epithelium of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "Rivinus'gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "Rivinus'gland epithelium" EXACT [OBOL:automatic]
synonym: "sublingual gland duct epithelium" RELATED [BTO:0004559]
synonym: "sublingual gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "sublingual gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0004559
xref: EMAPA:18810
xref: VHOG:0001098
is_a: UBERON:0004809 ! salivary gland epithelium
relationship: part_of UBERON:0001832 ! sublingual gland

[Term]
id: UBERON:0003368
name: epithelium of hard palate
namespace: uberon
def: "An epithelium that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic]
synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "hard palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18953
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0003384
name: skeletal muscle of pharynx
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic]
synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic]
xref: EMAPA:18963
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0003394
name: mesentery of hindgut
namespace: uberon
def: "A mesentery that is part of a hindgut [Obol]." [OBOL:automatic]
synonym: "hindgut mesentery" EXACT [OBOL:automatic]
xref: EMAPA:16718
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0003395
name: mesentery of rectum
namespace: uberon
def: "A mesentery that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectum mesentery" EXACT [OBOL:automatic]
xref: EMAPA:18664
xref: EMAPA:18929
is_a: UBERON:0003334 ! serosa of rectum
is_a: UBERON:0004854 ! gastrointestinal system mesentery
relationship: part_of UBERON:0001052 ! rectum

[Term]
id: UBERON:0003396
name: mesentery of colon
namespace: uberon
def: "A mesentery that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon mesentery" EXACT [OBOL:automatic]
synonym: "large bowel mesentery" EXACT [OBOL:automatic]
synonym: "large intestinal mesentery" EXACT [FMA:14645]
synonym: "mesentery of large bowel" EXACT [OBOL:automatic]
synonym: "mesentery of large intestine" EXACT [FMA:14645]
xref: EMAPA:18942
xref: FMA:14645
xref: SCTID:245457004
is_a: UBERON:0003335 ! serosa of colon
is_a: UBERON:0004854 ! gastrointestinal system mesentery
relationship: part_of UBERON:0001155 ! colon

[Term]
id: UBERON:0003397
name: mesentery of duodenum
namespace: uberon
def: "A mesentery that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "duodenum mesentery" EXACT [OBOL:automatic]
xref: EMAPA:19081
is_a: UBERON:0001170 ! mesentery of small intestine
is_a: UBERON:0003336 ! serosa of duodenum
relationship: part_of UBERON:0002114 ! duodenum

[Term]
id: UBERON:0003398
name: mesentery of jejunum
namespace: uberon
def: "A mesentery that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal mesentery" EXACT []
synonym: "jejunum mesentery" EXACT []
synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
xref: EMAPA:18670
xref: EMAPA:18937
xref: FMA:14651
xref: SCTID:261286003
is_a: UBERON:0001170 ! mesentery of small intestine
is_a: UBERON:0003337 ! serosa of jejunum
relationship: part_of UBERON:0002115 ! jejunum

[Term]
id: UBERON:0003408
name: gland of gut
namespace: uberon
def: "A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract gland" EXACT [OBOL:automatic]
synonym: "gland of digestive tract" EXACT [OBOL:automatic]
synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut gland" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic]
xref: EMAPA:18815
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0003409
name: gland of tongue
namespace: uberon
def: "A gland that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "tongue gland" EXACT [OBOL:automatic]
xref: EMAPA:25097
is_a: UBERON:0010047 ! oral gland
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003410
name: oropharyngeal gland
namespace: uberon
def: "A gland that is part of a oropharynx [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "gland of oropharynx" EXACT [EMAPA:25095]
synonym: "oral part of pharynx gland" EXACT [OBOL:automatic]
synonym: "oropharynx gland" EXACT [OBOL:automatic]
xref: EMAPA:25095
is_a: UBERON:0003295 ! pharyngeal gland
relationship: part_of UBERON:0001729 ! oropharynx

[Term]
id: UBERON:0003416
name: mesenchyme of tongue
namespace: uberon
def: "A mesenchyme that is part of a tongue [Obol]." [OBOL:automatic]
comment: todo - develops_from
synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614]
xref: EHDAA2:0004614
xref: EMAPA:17882
xref: EMAPA:18878
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003417
name: mesenchyme of soft palate
namespace: uberon
def: "A mesenchyme that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "soft palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18951
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0003418
name: mesenchyme of submandibular gland
namespace: uberon
def: "A mesenchyme that is part of a submandibular gland [Obol]." [OBOL:automatic]
synonym: "submandibular gland mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18814
xref: VHOG:0001110
relationship: part_of UBERON:0001736 ! submandibular gland

[Term]
id: UBERON:0003419
name: mesenchyme of parotid
namespace: uberon
def: "A mesenchyme that is part of a parotid gland [Obol]." [OBOL:automatic]
synonym: "mesenchyme of parotid gland" EXACT [OBOL:automatic]
synonym: "parotid gland mesenchyme" EXACT [OBOL:automatic]
synonym: "parotid mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18539
xref: VHOG:0001435
relationship: part_of UBERON:0001831 ! parotid gland

[Term]
id: UBERON:0003420
name: mesenchyme of sublingual gland
namespace: uberon
def: "A mesenchyme that is part of a sublingual gland [Obol]." [OBOL:automatic]
synonym: "ductus sublingualis mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "mesenchyme of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic]
synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18811
xref: VHOG:0001106
relationship: part_of UBERON:0001832 ! sublingual gland

[Term]
id: UBERON:0003424
name: mesenchyme of hard palate
namespace: uberon
def: "A mesenchyme that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18954
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0003450
name: upper jaw incisor
namespace: uberon
def: "A incisor tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor of upper jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor tooth" EXACT [OBOL:automatic]
synonym: "upper incisor" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "upper jaw incisor tooth" EXACT [OBOL:automatic]
synonym: "upper primary incisor tooth" NARROW [FMA:84214]
xref: EHDAA2:0002121
xref: EMAPA:17939
xref: FMA:55712
xref: MA:0001601
xref: ncithesaurus:Upper_Jaw_Incisor
is_a: UBERON:0001098 ! incisor tooth
is_a: UBERON:0003267 ! tooth of upper jaw

[Term]
id: UBERON:0003451
name: lower jaw incisor
namespace: uberon
def: "A incisor tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "incisor of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower incisor" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "lower jaw incisor tooth" EXACT [OBOL:automatic]
synonym: "lower primary incisor tooth" NARROW [FMA:84215]
synonym: "mandibular incisor" EXACT [BTO:0001942]
synonym: "ventral mandibular arch incisor" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch incisor tooth" EXACT [OBOL:automatic]
xref: BTO:0001942
xref: EHDAA2:0001021
xref: EMAPA:17918
xref: FMA:55713
xref: MA:0001600
xref: ncithesaurus:Lower_Jaw_Incisor
is_a: UBERON:0001098 ! incisor tooth
is_a: UBERON:0003268 ! tooth of lower jaw

[Term]
id: UBERON:0003453
name: large intestine Peyer's patch
namespace: uberon
comment: Edtor notes: requires expert attention
synonym: "large intestine Peyer's patch" EXACT [OBOL:automatic]
synonym: "Peyer's patch of large intestine" EXACT [OBOL:automatic]
xref: FMA:15658
xref: MA:0001550
is_a: UBERON:0001211 ! Peyer's patch
intersection_of: UBERON:0001211 ! Peyer's patch
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine

[Term]
id: UBERON:0003454
name: small intestine Peyer's patch
namespace: uberon
def: "nodular lymphoid structures on the serosal surface of the small intestine." []
synonym: "aggregated lymphoid follicle of small intestine" EXACT [FMA:15054]
synonym: "Peyer's patch" BROAD [FMA:15054]
synonym: "Peyer's patch of small bowel" EXACT [OBOL:automatic]
synonym: "Peyer's patch of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel Peyer's patch" EXACT [OBOL:automatic]
synonym: "small intestine Peyer's patch" EXACT [OBOL:automatic]
xref: FMA:15054
xref: MA:0001557
is_a: UBERON:0001211 ! Peyer's patch
intersection_of: UBERON:0001211 ! Peyer's patch
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0003470
name: artery of upper lip
namespace: uberon
def: "An artery that is part of a upper lip [Obol]." [OBOL:automatic]
xref: MA:0001917
is_a: UBERON:0006913 ! lip epithelium
relationship: part_of UBERON:0001834 ! upper lip

[Term]
id: UBERON:0003471
name: artery of lower lip
namespace: uberon
def: "An artery that is part of a lower lip [Obol]." [OBOL:automatic]
xref: MA:0001916
is_a: UBERON:0006913 ! lip epithelium
relationship: part_of UBERON:0001835 ! lower lip

[Term]
id: UBERON:0003477
name: vein of upper lip
namespace: uberon
def: "A vein that is part of a upper lip [Obol]." [OBOL:automatic]
synonym: "upper lip vein" EXACT [OBOL:automatic]
xref: MA:0002255
is_a: UBERON:0006913 ! lip epithelium
relationship: part_of UBERON:0001834 ! upper lip

[Term]
id: UBERON:0003478
name: vein of lower lip
namespace: uberon
def: "A vein that is part of a lower lip [Obol]." [OBOL:automatic]
synonym: "lower lip vein" EXACT [OBOL:automatic]
xref: MA:0002253
is_a: UBERON:0006913 ! lip epithelium
relationship: part_of UBERON:0001835 ! lower lip

[Term]
id: UBERON:0003582
name: nasopharynx connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a nasopharynx [Obol]." [OBOL:automatic]
synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx connective tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "nasopharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "nasopharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "rhinopharynx connective tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of nasopharynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic]
xref: MA:0001864
relationship: part_of UBERON:0001728 ! nasopharynx

[Term]
id: UBERON:0003655
name: molar tooth
namespace: uberon
def: "Molars are the rearmost and most complicated kind of tooth in most mammals." [Wikipedia:Molar_(tooth)]
comment: Adult humans have twelve molars, in four groups of three at the back of the mouth. The third, rearmost molar in each group is called a wisdom tooth. It is the last tooth to appear, breaking through the surface of the gum at about the age of twenty, although this varies from individual to individual. Ethnicity can also have an impact on the age at which this occurs, with statistical variations between groups. The human mouth contains upper (maxillary) and lower (mandibular) molars. They are: maxillary first molar, maxillary second molar, maxillary third molar, mandibular first molar, mandibular second molar, and mandibular third molar.
synonym: "dens molaris" EXACT [Wikipedia:Molar_%28tooth%29]
synonym: "molar" EXACT [MA:0000350]
synonym: "molaris" EXACT [BTO:0001759]
xref: BTO:0001759
xref: FMA:55638
xref: MA:0000350
xref: MESH:A.14.254.860.525
xref: ncithesaurus:Molar_Tooth
xref: SCTID:362115002
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003666
name: upper jaw molar
namespace: uberon
def: "A molar tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "molar tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch molar tooth" EXACT [OBOL:automatic]
synonym: "upper jaw molar tooth" EXACT [OBOL:automatic]
synonym: "upper primary molar tooth" EXACT [FMA:84210]
xref: EHDAA2:0002125
xref: EHDAA:8053
xref: EMAPA:17942
xref: FMA:55720
xref: MA:0001603
xref: ncithesaurus:Upper_Jaw_Molar
xref: SCTID:422318005
is_a: UBERON:0003267 ! tooth of upper jaw
is_a: UBERON:0003655 ! molar tooth

[Term]
id: UBERON:0003667
name: lower jaw molar
namespace: uberon
def: "A molar tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw molar tooth" EXACT [OBOL:automatic]
synonym: "lower primary molar tooth" NARROW [FMA:84213]
synonym: "molar tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "molar tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch molar tooth" EXACT [OBOL:automatic]
xref: EHDAA2:0001025
xref: EHDAA:8017
xref: EMAPA:17921
xref: FMA:55721
xref: MA:0001602
xref: ncithesaurus:Lower_Jaw_Molar
is_a: UBERON:0003268 ! tooth of lower jaw
is_a: UBERON:0003655 ! molar tooth

[Term]
id: UBERON:0003672
name: dentition
namespace: uberon
comment: In FMA this is an anatomical set
synonym: "dentes" EXACT [FMA:75150, FMA:TA]
synonym: "set of teeth" EXACT [FMA:75150]
synonym: "teeth" EXACT [FMA:75150]
synonym: "teeth" RELATED []
synonym: "teeth set" EXACT [FMA:75150]
xref: AAO:0000126
xref: FMA:75150
xref: GAID:1249
xref: MESH:A.14.254
xref: ncithesaurus:Dentition
xref: OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA
xref: SCTID:245543004
relationship: has_part UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0000165 {source="FMA"} ! mouth

[Term]
id: UBERON:0003674
name: cuspid
namespace: uberon
def: "In mammalian oral anatomy, the canine teeth, also called cuspids, dogteeth, fangs, or (in the case of those of the upper jaw) eye teeth, are relatively long, pointed teeth. However, they can appear more flattened, causing them to resemble incisors and leading them to be called incisiform. They evolved and are used primarily for firmly holding food in order to tear it apart, and occasionally as weapons. They are often the largest teeth in a mammal's mouth. Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines." [Wikipedia:Canine_tooth]
synonym: "canine %28tooth%29" RELATED [Wikipedia:Canine_tooth]
synonym: "canine eminence" RELATED [Wikipedia:Canine_tooth]
synonym: "canine teeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "canine teeth" RELATED [GAID:1262]
synonym: "canine tooth" RELATED [GAID:1262]
synonym: "cuspid" EXACT [FMA:55636]
synonym: "cuspis dentis" EXACT [FMA:55636, FMA:TA]
synonym: "dens caninus" RELATED [Wikipedia:Canine_tooth]
synonym: "dentes canini" RELATED LATIN [Wikipedia:Canine_tooth]
synonym: "dogtooth %28anatomy%29" RELATED [Wikipedia:Canine_tooth]
synonym: "eye teeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "eye tooth" RELATED [Wikipedia:Canine_tooth]
synonym: "eyeteeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "eyetooth" RELATED [Wikipedia:Canine_tooth]
synonym: "fang" RELATED [Wikipedia:Canine_tooth]
xref: FMA:55636
xref: GAID:1262
xref: MESH:A.14.254.860.200
xref: ncithesaurus:Canine_Tooth
xref: SCTID:88719004
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003675
name: tooth crown
namespace: uberon
synonym: "anatomical crown" EXACT [FMA:55623]
synonym: "corona dentis" EXACT [ncithesaurus:Corona_Dentis]
synonym: "crown" RELATED []
synonym: "crown of tooth" EXACT [FMA:55623]
synonym: "tooth crown" EXACT [FMA:55623]
xref: FMA:55623
xref: GAID:1275
xref: MESH:A.14.254.900.710
xref: ncithesaurus:Corona_Dentis
xref: SCTID:362106009
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003677
name: tooth root
namespace: uberon
synonym: "radix corona" EXACT [FMA:55624]
synonym: "root of tooth" EXACT [FMA:55624]
synonym: "tooth root" EXACT [FMA:55624]
xref: FMA:55624
xref: GAID:1280
xref: MESH:A.14.254.900.750
xref: SCTID:245728004
relationship: attaches_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003678
name: tooth apex
namespace: uberon
synonym: "apex of tooth" EXACT [FMA:63000]
synonym: "apical foramen" RELATED [GAID:1281]
synonym: "tooth apex" EXACT [FMA:63000]
synonym: "tooth apice" RELATED [GAID:1281]
xref: FMA:63000
xref: GAID:1281
xref: MESH:A.14.254.900.750.700
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003679
name: mouth floor
namespace: uberon
synonym: "floor of mouth" EXACT [FMA:86592]
synonym: "sublingual region" RELATED [GAID:1283]
xref: EFO:0001923
xref: FMA:86592
xref: GAID:1283
xref: MESH:A.14.549.441
xref: ncithesaurus:Floor_of_the_Mouth
xref: SCTID:245786002
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0003700
name: temporomandibular joint
namespace: uberon
def: "A joint of the jaw. There are two TMJs, one on either side, working in unison. The name is derived from the two bones which form the joint: the upper temporal bone which is part of the cranium (skull), and the lower jaw bone called the mandible. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]." [Wikipedia:Temporomandibular_joint]
synonym: "articulatio temporomandibularis" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "articulatio temporomandibularis" RELATED LATIN [Wikipedia:Temporomandibular_joint]
synonym: "dentary-squamosal joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html]
synonym: "jaw joint" RELATED []
synonym: "squamosal-dentary joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html]
synonym: "tempero-mandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temperomandibular joint" EXACT [HP:0010754]
synonym: "temporalmandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular articulation" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "TMJ" EXACT [BTO:0003674, Wikipedia:Temporomandibular_joint]
xref: BTO:0003674
xref: EMAPA:19196
xref: FMA:54832
xref: GAID:272
xref: MA:0002899
xref: MESH:A.02.835.583.861
xref: ncithesaurus:Jaw_Joint
xref: SCTID:181814009
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0003703
name: extrahepatic bile duct
namespace: uberon
def: "the passages external to the liver for the conveyance of bile." [MP:0009498]
subset: vertebrate_core
synonym: "bile duct extrahepatic part" RELATED [MA:0002659]
synonym: "extrahepatic biliary system" RELATED [GAID:281]
xref: FMA:14678
xref: GAID:281
xref: MA:0002659
xref: MESH:A.03.159.183.079
xref: ncithesaurus:Extrahepatic_Bile_Duct
xref: SCTID:276158002
property_value: "spatially_disjoint_from" UBERON:0002107
is_a: UBERON:0002394 ! bile duct

[Term]
id: UBERON:0003704
name: intrahepatic bile duct
namespace: uberon
def: "the passages within the liver for the conveyance of bile." [MP:0009497]
subset: vertebrate_core
synonym: "bile duct intrahepatic part" EXACT [MA:0001630]
xref: FMA:15766
xref: GAID:287
xref: MA:0001630
xref: MESH:A.03.159.183.158
xref: ncithesaurus:Intrahepatic_Bile_Duct
xref: SCTID:362193005
xref: TAO:0005169
xref: ZFA:0005169
is_a: UBERON:0002394 ! bile duct
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0003705
name: meckel's diverticulum
namespace: uberon
def: "a small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct" [Wikipedia:Meckel's_diverticulum]
comment: AO notes: finding in ncit
synonym: "diverticulum of meckel" EXACT [FMA:14967]
synonym: "ileal diverticulum" EXACT [FMA:14967]
synonym: "meckel diverticulum" RELATED [GAID:317]
synonym: "meckel's diverticulum" EXACT [FMA:14967]
synonym: "meckels diverticulum" RELATED [GAID:317]
xref: FMA:14967
xref: GAID:317
xref: galen:MeckelsDiverticulum
xref: MESH:A.03.492.411.620.484.612
xref: ncithesaurus:Meckel_Diverticulum
relationship: part_of UBERON:0002116 ! ileum

[Term]
id: UBERON:0003729
name: mouth mucosa
namespace: uberon
def: "the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized." [Wikipedia:Oral_mucosa]
comment: ncit split mouth/oral mucosa into lip and buccal
synonym: "adult mouth mucosa" EXACT [OBOL:automatic]
synonym: "adult mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "adult mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "adult mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "buccal mucosa" RELATED [GAID:951]
synonym: "mouth mucosa" EXACT [FMA:59660]
synonym: "mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of mouth" EXACT [OBOL:automatic]
synonym: "mucosal lining of mouth" RELATED [MA:0002794]
synonym: "mucous membrane of adult mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of mouth" EXACT [FMA:59660]
synonym: "oral mucosa" RELATED [GAID:951]
synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660]
synonym: "organ mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "organ mucosa of mouth" EXACT [OBOL:automatic]
synonym: "tunica mucosa oris" EXACT [FMA:59660, FMA:TA]
synonym: "tunica mucosa oris" RELATED LATIN [Wikipedia:Oral_mucosa]
xref: BTO:0002860
xref: FMA:59660
xref: GAID:951
xref: MA:0002794
xref: MESH:A.10.615.550.599
xref: ncithesaurus:Oral_Mucosa
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0003832
name: esophagus muscle
namespace: uberon
def: "A muscle organ that is part of a esophagus [Obol]." [OBOL:automatic]
comment: todo - split muscle vs muscle layer? MA subdivides into skeletal/smooth, wth smooth divided into circular and longitudinal
synonym: "esophagus muscle organ" EXACT [OBOL:automatic]
synonym: "gullet muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of esophagus" EXACT [OBOL:automatic]
synonym: "muscle organ of gullet" EXACT [OBOL:automatic]
synonym: "muscle organ of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus muscle organ" EXACT [OBOL:automatic]
xref: FMA:62998
xref: MA:0002682
xref: SCTID:360961009
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 {source="MA"} ! wall of esophagus

[Term]
id: UBERON:0003843
name: dental epithelium
namespace: uberon
def: "Epithelium that is part of a developing tooth or dental organ." [ZFIN:curator]
comment: Development notes: In the developing molar dentition of the mouse, tooth inductive po- tential resides in the dental epithelium until embryonic day (E)12.5 (3). Thereafter, tooth inductive potential shifts to neural crest-derived dental mesenchyme, which acquires the ability to direct tooth formation in nonodontogenic tissues (3, 4)[PMID:10954731]
subset: vertebrate_core
synonym: "dental epithelia" EXACT PLURAL [ZFA:0005134]
synonym: "dental epithelium" EXACT [ZFA:0005134]
synonym: "tootg epithelium" EXACT []
xref: AAO:0011027
xref: BTO:0001723
xref: EMAPA:17922
xref: EMAPA:17943
xref: TAO:0005134
xref: VHOG:0001443
xref: XAO:0003203
xref: ZFA:0005134
is_a: UBERON:0003351 ! pharyngeal epithelium
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ

[Term]
id: UBERON:0003856
name: dental mesenchyme
namespace: uberon
def: "Mesenchyme enclosed by dental organ." [ZFIN:curator]
comment: TODO - neural crest contributions
subset: vertebrate_core
synonym: "dental organ mesenchyme" EXACT [OBOL:automatic]
synonym: "enamel organ mesenchyme" EXACT [OBOL:automatic]
synonym: "tooth enamel organ mesenchyme" EXACT [OBOL:automatic]
synonym: "tooth mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17920
xref: EMAPA:17923
xref: EMAPA:17941
xref: EMAPA:17944
xref: TAO:0005139
xref: VHOG:0001444
xref: ZFA:0005139
relationship: part_of UBERON:0005176 {source="ZFA"} ! tooth enamel organ

[Term]
id: UBERON:0003910
name: splenic sinusoid
namespace: uberon
def: "wide vessels in the spleen that drain into trabecular veins[WP]." [Wikipedia:Red_pulp#Sinusoids]
comment: Taxon notes: Whereas man and the rat are in the "sinusal" group, the mouse belongs in the "nonsinusal" group. The red pulp of spleens of rat, dog, man, and many other mammals contains an elaborate plexus of sinuses; that of mouse, cat, pig and others has no true sinuses and relatively few veins leading from the meshes into collecting veins - http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml
synonym: "sinusoidal blood vessel of spleen" EXACT [OBOL:automatic]
xref: FMA:63199
xref: SCTID:9081000
relationship: part_of UBERON:0001250 ! red pulp of spleen

[Term]
id: UBERON:0003928
name: digestive system duct
namespace: uberon
def: "A duct that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "duct of digestive system" EXACT [OBOL:automatic]
synonym: "duct of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system duct" EXACT [OBOL:automatic]
xref: TAO:0005162
xref: ZFA:0005162
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0003929
name: gut epithelium
namespace: uberon
def: "An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive tract epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gut" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "epithelium of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelium of gut" EXACT [OBOL:automatic]
synonym: "epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelium" EXACT [OBOL:automatic]
xref: BTO:0000956
xref: EHDAA2:0004567
xref: ncithesaurus:Gut_Epithelium
xref: TAO:0005123
xref: XAO:0003200
xref: ZFA:0005123
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0003949
name: tubal tonsil
namespace: uberon
def: "the lymph tissue associated with the pharyngeal opening of the auditory tube" [MP:0002386]
synonym: "auditory tube lymph gland" EXACT [FMA:54975]
synonym: "eustachian amygdala" EXACT [FMA:54975]
synonym: "Gerlach's tonsil" EXACT [FMA:54975]
synonym: "Gerlach's tubal tonsil" EXACT [FMA:54975]
xref: FMA:54975
xref: SCTID:143319002
is_a: UBERON:0002372 ! tonsil
relationship: part_of UBERON:0001735 ! tonsillar ring

[Term]
id: UBERON:0003955
name: molar crown
namespace: uberon
def: "the part of a molar that is covered by enamel" [MP:0003932]
synonym: "crown of molar tooth" EXACT [FMA:85301]
synonym: "molar tooth crown" EXACT [FMA:85301]
synonym: "molar tooth tooth crown" EXACT [OBOL:automatic]
synonym: "tooth crown of molar tooth" EXACT [OBOL:automatic]
xref: FMA:85301
is_a: UBERON:0003675 ! tooth crown
intersection_of: UBERON:0003675 ! tooth crown
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0003655 ! molar tooth

[Term]
id: UBERON:0003985
name: major sublingual duct
namespace: uberon
def: "the duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla" [MP:0009528]
synonym: "Bartholin's duct" RELATED INCONSISTENT [FMA:59986]
xref: BTO:0004558
xref: FMA:59986
xref: SCTID:25237008
is_a: UBERON:0003928 ! digestive system duct
relationship: part_of UBERON:0001838 ! sublingual duct

[Term]
id: UBERON:0003986
name: minor sublingual duct
namespace: uberon
def: "the 8-20 small ducts that open into the mouth on the surface of the sublingual fold" [MP:0009529]
xref: FMA:59987
is_a: UBERON:0003928 ! digestive system duct
relationship: part_of UBERON:0001838 ! sublingual duct

[Term]
id: UBERON:0004041
name: spleen primary B follicle
namespace: uberon
def: "the nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp" [MP:0008471]
comment: AO notes - FMA:15843 is classified as primary follicle so it belongs here
synonym: "primary spleen B cell follicle" EXACT [CL:tm]
xref: FMA:15843
is_a: UBERON:0001249 ! spleen lymphoid follicle
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0004042
name: spleen secondary B follicle
namespace: uberon
def: "the nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp" [MP:0008472]
synonym: "secondary spleen B cell follicle" EXACT [CL:tm]
synonym: "splenic secondary B cell follicle" EXACT [MP:0008472]
is_a: UBERON:0001249 ! spleen lymphoid follicle
relationship: develops_from UBERON:0004041 {source="CL:tm"} ! spleen primary B follicle
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0004045
name: tailgut
namespace: uberon
def: "the extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening" [MP:0008787]
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0004058
name: biliary ductule
namespace: uberon
def: "One of the fine terminal elements of the bile duct system, leaving the portal canal, and pursuing a course at the periphery of a lobule of the liver[BTO]. the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct[MP]" [BTO:0002840, MP:0009494]
comment: ZFIN: Digestive system duct that collects bile from the canaliculus and transports bile through the liver -- (check if the same) // The smallest and the most peripheral branches of the biliary tree consist of a portal part (portal ductule) and an intralobular part (intralobular ductule) //
synonym: "bile capillary" RELATED [BTO:0002840]
synonym: "bile ductule" EXACT [BTO:0002840]
synonym: "biliary ductule" RELATED [BTO:0002840]
synonym: "cholangiole" RELATED [BTO:0002840]
xref: BTO:0002840
xref: TAO:0005164
xref: ZFA:0005164
is_a: UBERON:0003928 ! digestive system duct
relationship: adjacent_to UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct

[Term]
id: UBERON:0004163
name: anterior ectodermal midgut
namespace: uberon
def: "portions of the midgut that are derived from ectoderm." [GO:0007441]
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0004185
name: endodermal gut
namespace: uberon
def: "A portions of the gut that is derived from endoderm." [GO:0061031]
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0004220
name: large intestine smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a large intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of large intestine" EXACT [OBOL:automatic]
synonym: "large intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "large intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "large intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of large intestine" EXACT [OBOL:automatic]
xref: MA:0001547
is_a: UBERON:0004221 ! intestine smooth muscle
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine

[Term]
id: UBERON:0004221
name: intestine smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a intestine [Obol]." [OBOL:automatic]
synonym: "bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of intestine" EXACT [OBOL:automatic]
xref: BTO:0000643
xref: MA:0001539
xref: ncithesaurus:Intestinal_Smooth_Muscle_Tissue
xref: WBbt:0005796
is_a: UBERON:0004226 ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine

[Term]
id: UBERON:0004222
name: stomach smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a stomach [Obol]." [OBOL:automatic]
synonym: "gastric muscle" RELATED [BTO:0001818]
synonym: "gastric smooth muscle" RELATED [MA:0001627]
synonym: "involuntary muscle of stomach" EXACT [OBOL:automatic]
synonym: "involuntary muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of stomach" EXACT [OBOL:automatic]
synonym: "non-striated muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach involuntary muscle" EXACT [OBOL:automatic]
synonym: "stomach muscle" RELATED [BTO:0001818]
synonym: "stomach non-striated muscle" EXACT [OBOL:automatic]
synonym: "stomach smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "ventriculus involuntary muscle" EXACT [OBOL:automatic]
synonym: "ventriculus non-striated muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001818
xref: MA:0001627
is_a: UBERON:0004226 ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach

[Term]
id: UBERON:0004226
name: gastrointestinal system smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system involuntary muscle" EXACT [OBOL:automatic]
synonym: "digestive system non-striated muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gastrointestinal system involuntary muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system non-striated muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of digestive system" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of digestive system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001523
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004231
name: anal region smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal region non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal region smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal triangle non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal region" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal region" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001532
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004238
name: spleen smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a spleen [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of spleen" EXACT [OBOL:automatic]
synonym: "non-striated muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of spleen" EXACT [OBOL:automatic]
synonym: "spleen involuntary muscle" EXACT [OBOL:automatic]
synonym: "spleen non-striated muscle" EXACT [OBOL:automatic]
synonym: "spleen smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0000757
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0004239
name: small intestine smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a small intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of small bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of small intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "small bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "small intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "small intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "small intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of small intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small intestine" EXACT [OBOL:automatic]
xref: MA:0001559
is_a: UBERON:0004221 ! intestine smooth muscle
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0004240
name: gall bladder smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "biliary smooth muscle" RELATED [MA:0001635]
synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gall bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gallbladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gallbladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gallbladder" EXACT [OBOL:automatic]
xref: MA:0001635
xref: ncithesaurus:Gallbladder_Smooth_Muscle_Tissue
relationship: part_of UBERON:0002110 ! gallbladder

[Term]
id: UBERON:0004363
name: aortic arch
namespace: uberon
alt_id: UBERON:0004342
alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059
def: "One of a series of paired embryological vascular structures which give rise to several major arteries." [MP:0002672, Wikipedia:Aortic_arches]
comment: Usage notes: Do not confuse with arch of aorta. Editor notes: add specific artery derivatives. Development notes: The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches. Taxon notes: Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods
subset: uberon_slim
subset: vertebrate_core
synonym: "aa. arcuum pharyngeorum" RELATED LATIN [Wikipedia:Aortic_arches]
synonym: "aortic arches" EXACT PLURAL [ZFA:0005004]
synonym: "branchial aortic arches " EXACT PLURAL [ZFIN:ZDB-PUB-080512-6]
synonym: "branchial arch artery" EXACT [EMAPA:16684]
synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672]
xref: AAO:0010414
xref: EFO:0003695
xref: EHDAA2:0000186
xref: EHDAA:398
xref: EHDAA:7327
xref: EMAPA:16684
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray473.png/200px-Gray473.png
xref: ncithesaurus:Aortic_Arch
xref: TAO:0005004
xref: VHOG:0000122
xref: XAO:0000341
xref: ZFA:0005004
is_a: UBERON:0003351 ! pharyngeal epithelium
relationship: part_of UBERON:0007303 {source="ZFA"} ! pharyngeal vasculature

[Term]
id: UBERON:0004467
name: musculature of pharynx
namespace: uberon
def: "A musculature that is part of a pharynx [Obol]." [OBOL:automatic]
subset: vertebrate_core
xref: FMA:264609
xref: TAO:0001307
xref: ZFA:0001307
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0004477
name: Set of muscles of tongue
namespace: uberon
def: "A musculature that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "muscle group of tongue" EXACT [FMA:71289]
synonym: "muscles of tongue" EXACT [FMA:71289]
synonym: "musculi linguae" EXACT [FMA:71289, FMA:TA]
xref: FMA:71289
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0004503
name: skeletal muscle tissue of digastric
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a digastric [Obol]." [OBOL:automatic]
xref: FMA:261872
is_a: UBERON:0003384 ! skeletal muscle of pharynx
relationship: part_of UBERON:0001562 ! digastric

[Term]
id: UBERON:0004504
name: skeletal muscle tissue of mylohyoid
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Obol]." [OBOL:automatic]
xref: FMA:261878
is_a: UBERON:0003384 ! skeletal muscle of pharynx
relationship: part_of UBERON:0001564 ! mylohyoid

[Term]
id: UBERON:0004519
name: muscle of anal triangle
namespace: uberon
def: "A muscle organ that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal triangle muscle" EXACT [FMA:77304]
xref: FMA:77304
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004550
name: gastroesophageal sphincter
namespace: uberon
def: "A sphincter muscle that is part of a cardia of stomach [Obol]." [OBOL:automatic]
comment: todo - split? check FMA:63048
synonym: "cardiac sphincter" RELATED [MA:0002951]
synonym: "gastroesophageal sphincter" EXACT [FMA:14915]
synonym: "inferior esophageal sphincter" EXACT [FMA:14915]
synonym: "lower esophageal sphincter" RELATED [MA:0002951]
xref: FMA:14915
xref: galen:LowerEsophagealSphincter
xref: MA:0002951
xref: ncithesaurus:Lower_Esophageal_Sphincter
xref: SCTID:267809009
relationship: part_of UBERON:0001162 ! cardia of stomach

[Term]
id: UBERON:0004641
name: spleen capsule
namespace: uberon
def: "A capsule that is part of a spleen [Obol]." [OBOL:automatic]
synonym: "capsule of spleen" EXACT [FMA:15849]
synonym: "fibroelastic coat of spleen" EXACT [FMA:15849]
synonym: "fibrous capsule of spleen" EXACT [FMA:15849]
synonym: "Malpighian capsule" EXACT [FMA:15849]
synonym: "splenic capsule" EXACT [FMA:15849]
synonym: "tunica fibrosa (splen)(lien)" EXACT [FMA:15849]
xref: FMA:15849
xref: MA:0000753
xref: ncithesaurus:Splenic_Capsule
xref: SCTID:329635002
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0004647
name: liver lobule
namespace: uberon
synonym: "hepatic lobule" EXACT [FMA:14471]
synonym: "lobulus hepaticus" EXACT [FMA:14471]
xref: FMA:14471
xref: MA:0002494
xref: ncithesaurus:Hepatic_Lobule
xref: SCTID:362194004
relationship: part_of UBERON:0001280 {source="FMA"} ! liver parenchyma

[Term]
id: UBERON:0004648
name: esophagus muscularis mucosa
namespace: uberon
synonym: "esophagus muscularis mucosae" EXACT []
synonym: "lamina muscularis of esophageal mucous membrane" EXACT [FMA:63059]
synonym: "muscularis mucosae of esophagus" EXACT [FMA:63059]
xref: FMA:63059
xref: MA:0002681
xref: ncithesaurus:Esophageal_Muscularis_Mucosa
xref: SCTID:47720007
is_a: UBERON:0002112 ! smooth muscle of esophagus
is_a: UBERON:0006676 ! muscularis mucosa
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa

[Term]
id: UBERON:0004650
name: tongue keratinized epithelium
namespace: uberon
synonym: "keratinized epithelium of tongue" EXACT [FMA:74865]
xref: FMA:74865
xref: MA:0002787
is_a: UBERON:0006919 ! tongue squamous epithelium

[Term]
id: UBERON:0004693
name: peyer's patch epithelium
namespace: uberon
def: "An epithelium that is part of a Peyer ' s patch [Obol]." [OBOL:automatic]
xref: MA:0000731
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0001211 ! Peyer's patch

[Term]
id: UBERON:0004697
name: Peyer's patch germinal center
namespace: uberon
def: "area of the Peyer's patch where B cells proliferate and differentiate into plasma cells" [MP:0002391]
xref: MA:0000734
relationship: part_of UBERON:0001211 ! Peyer's patch

[Term]
id: UBERON:0004740
name: basibranchial
namespace: uberon
def: "Median ventral cartilage or bony element at the ventral point of a branchial arch, behind the tongue." [http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is, http://www.merriam-webster.com/dictionary/basibranchial]
synonym: "basibranchials" EXACT [ZFA:0000170]
synonym: "copula I" RELATED [AAO:0000686]
xref: AAO:0000686
xref: EFO:0003503
xref: TAO:0000170
xref: ZFA:0000170
relationship: part_of UBERON:0005886 {source="ZFA"} ! pharyngeal arch 3-7 skeleton

[Term]
id: UBERON:0004757
name: rectal gland
namespace: uberon
def: "An evagination of the terminal portion of the intestine of Elasmobranchii. Function formerly thought to be related to digestion or excretion, but now considered to secrete high concentrations of excess sodium chloride. Found also in the coelacanth Latimeria chalumnae[BTO]." [BTO:0001157]
comment: does not include FMA:15724 Rectal gland // epithelial tissue gland - concentrates & secretes excess Na & Cl in sharks. large shark liver produces copious amounts of urea, making the shark hyperosmotic to seawater, & thus a shark acts like a fresh water fish, constantly gaining water. Excess salts are concentrated by the rectal gland and secreted
subset: organ_slim
xref: BTO:0001157
xref: SCTID:80455007
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0001052 ! rectum

[Term]
id: UBERON:0004760
name: gland of anal canal
namespace: uberon
def: "A gland that is part of an anal canal [Obol]." [OBOL:automatic, Wikipedia:Anal_gland]
subset: organ_slim
synonym: "anal gland" RELATED []
synonym: "anal sac" RELATED SENSU [Wikipedia:Anal_gland]
synonym: "gland of anal canal" EXACT [OBOL:automatic]
synonym: "gland of anus" RELATED []
synonym: "rectal gland" RELATED []
xref: EMAPA:27221
xref: EMAPA:27233
xref: EMAPA:27543
xref: FMA:15720
xref: FMA:15724
xref: ncithesaurus:Anal_Gland
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0000159 ! anal canal

[Term]
id: UBERON:0004767
name: vomerine tooth
namespace: uberon
def: "A tooth that is on the vomer." [http://www.encyclo.co.uk/define/Vomerine%20teeth]
xref: AAO:0000635
xref: TAO:0001631
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0004780
name: gastrointestinal system lamina propria
namespace: uberon
xref: MA:0001899
xref: ncithesaurus:Gastrointestinal_Tract_Lamina_Propria
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004781
name: gall bladder lamina propria
namespace: uberon
def: "A lamina propria that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "biliary lamina propria" RELATED [MA:0001633]
synonym: "gall bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder lamina propria" EXACT [OBOL:automatic]
synonym: "gallbladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gallbladder" EXACT [OBOL:automatic]
synonym: "lamina propria of gall bladder" EXACT [OBOL:automatic]
synonym: "lamina propria of gallbladder" EXACT [OBOL:automatic]
xref: MA:0001633
xref: ncithesaurus:Gallbladder_Lamina_Propria
relationship: part_of UBERON:0002110 ! gallbladder

[Term]
id: UBERON:0004782
name: gastrointestinal system serosa
namespace: uberon
def: "A serous membrane that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system serosa" EXACT [OBOL:automatic]
synonym: "digestive system serous membrane" EXACT [OBOL:automatic]
synonym: "gastrointestinal system serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of digestive system" EXACT [OBOL:automatic]
synonym: "serosa of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "serous membrane of digestive system" EXACT [OBOL:automatic]
synonym: "serous membrane of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001522
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004783
name: gall bladder serosa
namespace: uberon
def: "A serous membrane that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "biliary serosa" RELATED [MA:0001634]
synonym: "gall bladder serous membrane" EXACT [OBOL:automatic]
synonym: "gallbladder serosa" EXACT [OBOL:automatic]
synonym: "gallbladder serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of gall bladder" EXACT [OBOL:automatic]
synonym: "serosa of gallbladder" EXACT [OBOL:automatic]
synonym: "serous coat of gallbladder" EXACT [FMA:14659]
synonym: "serous membrane of gall bladder" EXACT [OBOL:automatic]
synonym: "serous membrane of gallbladder" EXACT [OBOL:automatic]
synonym: "tunica serosa (vesica biliaris)" EXACT [FMA:14659]
synonym: "tunica serosa vesicae biliaris" EXACT [FMA:14659, FMA:TA]
xref: FMA:14659
xref: MA:0001634
xref: SCTID:362197006
relationship: part_of UBERON:0002110 ! gallbladder

[Term]
id: UBERON:0004786
name: gastrointestinal system mucosa
namespace: uberon
comment: The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468
synonym: "digestive tract mucosa" EXACT [UBERON:cjm]
synonym: "gut mucosa" EXACT [BTO:0000546]
synonym: "gut mucuous membrane" EXACT [UBERON:cjm]
synonym: "mucosa of gut" EXACT [UBERON:cjm]
xref: BTO:0000546
xref: MA:0001521
xref: SCTID:410433007
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004794
name: esophagus secretion
namespace: uberon
def: "A secretion that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal secretion" EXACT [FMA:79662]
synonym: "gullet secretion" EXACT [OBOL:automatic]
synonym: "oesophagus secretion" EXACT [OBOL:automatic]
synonym: "secretion of esophagus" EXACT [OBOL:automatic]
synonym: "secretion of gullet" EXACT [OBOL:automatic]
synonym: "secretion of oesophagus" EXACT [OBOL:automatic]
xref: FMA:79662
xref: MA:0002514
xref: ncithesaurus:Esophagus_Secretion
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0004808
name: gastrointestinal system epithelium
namespace: uberon
def: "An epithelium that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive system epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive system" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "epithelium of digestive system" EXACT [OBOL:automatic]
synonym: "epithelium of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001520
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004809
name: salivary gland epithelium
namespace: uberon
def: "An epithelium that is part of a salivary gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of salivary gland" EXACT [OBOL:automatic]
synonym: "epithelium of salivary gland" EXACT [OBOL:automatic]
synonym: "salivary gland epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0004421
xref: EMAPA:17753
xref: EMAPA:17756
xref: MA:0001587
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001044 ! salivary gland

[Term]
id: UBERON:0004820
name: bile duct epithelium
namespace: uberon
def: "Epithelium of the gallbladder and the intrahepatic and extrahepatic bile ducts." [BTO:0001513]
comment: todo - check if BTO terms need merged
synonym: "bile duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "biliary duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "biliary duct epithelium" EXACT [OBOL:automatic]
synonym: "biliary epithelium" EXACT [BTO:0001513]
synonym: "epithelial tissue of bile duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of biliary duct" EXACT [OBOL:automatic]
synonym: "epithelium of bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of biliary duct" EXACT [OBOL:automatic]
xref: BTO:0000417
xref: BTO:0001513
xref: MA:0001629
xref: ncithesaurus:Bile_Duct_Epithelium
relationship: part_of UBERON:0002394 ! bile duct

[Term]
id: UBERON:0004822
name: extrahepatic bile duct epithelium
namespace: uberon
def: "An epithelium that is part of a extrahepatic bile duct [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of extrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of extrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "extrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0002661
xref: ncithesaurus:Extrahepatic_Bile_Duct_Epithelium
is_a: UBERON:0004820 ! bile duct epithelium
relationship: part_of UBERON:0003703 ! extrahepatic bile duct

[Term]
id: UBERON:0004823
name: intrahepatic bile duct epithelium
namespace: uberon
def: "An epithelium that is part of a intrahepatic bile duct [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of intrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of intrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "intrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0002662
xref: ncithesaurus:Intrahepatic_Bile_Duct_Epithelium
is_a: UBERON:0004820 ! bile duct epithelium
relationship: part_of UBERON:0003704 ! intrahepatic bile duct

[Term]
id: UBERON:0004825
name: dental lamina
namespace: uberon
def: "a band of epithelial tissue seen in histologic sections of a developing tooth. The dental lamina is first evidence of tooth development and begins at the sixth week in utero or three weeks after the rupture of the buccopharyngeal membrane. It is formed when cells of the oral ectoderm proliferate faster than cells of other areas. Best described as an in-growth of oral ectoderm, the dental lamina is frequently distinguished from the vestibular lamina, which develops concurrently. This dividing tissue is surrounded by and, some would argue, stimulated by ectomysenchymal growth. When it is present, the dental lamina connects the developing tooth bud to the epithelium of the oral cavity. Eventually, the dental lamina disintegrates into small clusters of epithelium and is resorbed. In situations when the clusters are not resorbed, (this remanent of the dental lamina is sometimes known as the glands of Serres) eruption cysts are formed over the developing tooth and delay its eruption into the oral cavity. This invagination of ectodermal tissues is the proginitor to the later ameloblasts and enamel while the ectomysenchyme is responsible for the dental papilla and later odontoblasts." [Wikipedia:Dental_lamina]
comment: Homology notes: In the epidermis of embryonic birds, there remains a transient thickening that is comparable to the early formation of the dental lamina in the mouse[PMID:10954731]. AO notes: check MA placement
synonym: "lamina dentalis" RELATED LATIN [Wikipedia:Dental_lamina]
xref: EMAPA:18292
xref: EMAPA:18295
xref: EMAPA:18298
xref: EMAPA:18301
xref: MA:0001597
xref: SCTID:362862007
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001091 {source="MA"} ! calcareous tooth

[Term]
id: UBERON:0004831
name: esophagus skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: MA:0001572
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0003832 ! esophagus muscle

[Term]
id: UBERON:0004832
name: anal region skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001530
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004833
name: lip skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a lip [Obol]." [OBOL:automatic]
synonym: "lip skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of lip" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of lip" EXACT [OBOL:automatic]
xref: MA:0001578
relationship: part_of UBERON:0001833 ! lip

[Term]
id: UBERON:0004834
name: hepatic duct smooth muscle
namespace: uberon
xref: MA:0001640
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0004854
name: gastrointestinal system mesentery
namespace: uberon
def: "A mesentery that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of digestive system" EXACT [OBOL:automatic]
synonym: "mesentery of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001900
is_a: UBERON:0004782 ! gastrointestinal system serosa
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004902
name: urogenital sinus epithelium
namespace: uberon
def: "The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [PMID:18977204]
comment: we follow EHDAA2 in dividing the UGS into epithelium and lumen
synonym: "epithelium of urogenital sinus" EXACT [OBOL:automatic]
synonym: "UGE" EXACT [PMID:18977204]
xref: EHDAA2:0004061
is_a: UBERON:0009846 ! embryonic cloacal epithelium
relationship: develops_from UBERON:0009846 {source="EHDAA2"} ! embryonic cloacal epithelium
relationship: part_of UBERON:0000164 ! primitive urogenital sinus

[Term]
id: UBERON:0004906
name: ectodermal gut
namespace: uberon
def: "A portion of the gut that is derived from ectoderm." [GO:0007439]
is_a: UBERON:0004185 ! endodermal gut
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0004907
name: lower digestive tract
namespace: uberon
def: "the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
subset: uberon_slim
synonym: "gut" BROAD [GO:0048565]
synonym: "lower gastrointestinal tract" EXACT []
synonym: "lower GI tract" EXACT []
xref: EHDAA2:0000726
xref: FMA:49179
xref: galen:LowerGastrointestinalTract
xref: MA:0000917
xref: ncithesaurus:Lower_Gastrointestinal_Tract
xref: SCTID:279973004
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001046 ! hindgut
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004908
name: upper digestive tract
namespace: uberon
def: "the region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L. In Galen, entire GI tract excludes esophagus
subset: uberon_slim
synonym: "upper gastrointestinal tract" EXACT []
synonym: "upper GI tract" EXACT []
xref: FMA:49177
xref: galen:UpperGastrointestinalTract
xref: ncithesaurus:Upper_Gastrointestinal_Tract
xref: SCTID:181244000
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001041 ! foregut

[Term]
id: UBERON:0004912
name: biliary bud
namespace: uberon
synonym: "hepatic diverticulum" RELATED [EMAPA:16561]
xref: EHDAA2:0000171
xref: EMAPA:16561
xref: EMAPA:16565
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png
xref: VHOG:0001351
is_a: UBERON:0009497 ! epithelium of foregut-midgut junction
relationship: part_of UBERON:0006235 {source="EMAPA"} ! foregut-midgut junction

[Term]
id: UBERON:0004913
name: hepatopancreatic ampulla
namespace: uberon
def: "A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct." [Wikipedia:Ampulla_of_Vater]
subset: vertebrate_core
synonym: "ampulla biliaropancreatica" EXACT [FMA:15076, FMA:TA]
synonym: "Ampulla hepatopancreatica, ampulla Vaterii" RELATED LATIN [Wikipedia:Ampulla_of_Vater]
synonym: "ampulla of bile duct" EXACT [FMA:15076]
synonym: "ampulla of Vater" EXACT []
synonym: "biliaropancreatic ampulla" EXACT []
synonym: "papilla duodeni major" RELATED [ZFA:0005167]
synonym: "papilla Vateri" EXACT [ZFA:0005167]
synonym: "Vater's ampulla" EXACT []
xref: FMA:15076
xref: GAID:283
xref: galen:AmpullaOfVater
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Biliary_system_new.svg/200px-Biliary_system_new.svg.png
xref: MESH:A.03.159.183.079.300.900
xref: ncithesaurus:Ampulla_of_Vater
xref: SCTID:362200007
xref: TAO:0005167
xref: ZFA:0005167
is_a: UBERON:0003928 ! digestive system duct
relationship: part_of UBERON:0001174 ! common bile duct
relationship: part_of UBERON:0004914 ! duodenal papilla

[Term]
id: UBERON:0004914
name: duodenal papilla
namespace: uberon
def: "." [Wikipedia:Major_duodenal_papilla, Wikipedia:Minor_duodenal_papilla]
synonym: "papilla duodeni major" RELATED LATIN [Wikipedia:Major_duodenal_papilla]
synonym: "papilla duodeni minor" RELATED LATIN [Wikipedia:Minor_duodenal_papilla]
synonym: "papilla of duodenum" EXACT []
xref: EMAPA:18662
xref: EMAPA:18853
xref: FMA:15953
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
xref: SCTID:245389007
relationship: part_of UBERON:0002114 ! duodenum

[Term]
id: UBERON:0004915
name: sphincter of hepatopancreatic ampulla
namespace: uberon
def: "muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]." [Wikipedia:Sphincter_of_ampulla]
synonym: "hepatopancreatic ampullary sphincter" EXACT [FMA:15077]
synonym: "musculus sphincter ampullae" EXACT [FMA:15077]
synonym: "Oddi's sphincter" EXACT []
synonym: "sphincter of ampulla of vater" EXACT [FMA:15077]
synonym: "sphincter of Oddi" EXACT []
xref: EMAPA:18663
xref: EMAPA:18854
xref: FMA:15077
xref: GAID:285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
xref: MESH:A.03.159.183.079.300.900.600
xref: ncithesaurus:Sphincter_of_Oddi
xref: SCTID:181271000
relationship: part_of UBERON:0004913 ! hepatopancreatic ampulla

[Term]
id: UBERON:0004916
name: anal sphincter
namespace: uberon
def: "A sphincter muscle in the anal part of the perineum." [OBOL:automatic]
is_a: UBERON:0004519 ! muscle of anal triangle
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004921
name: subdivision of digestive tract
namespace: uberon
comment: intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct. we include pharynx, esophagus here, we may want an additional term for major subdivisions (fore/mid/hind vs upper/lower)
synonym: "alimentary system subdivision" EXACT [FMA:71131]
synonym: "subdivision of alimentary system" EXACT [FMA:71131]
xref: FBbt:00100315
xref: FMA:71131
is_a: UBERON:0004185 ! endodermal gut
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0004924
name: submucosa of pharynx
namespace: uberon
def: "A submucosa that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "pharyngeal submucosa" EXACT [FMA:75144]
synonym: "pharynx submucosa" EXACT [OBOL:automatic]
xref: FMA:75144
xref: SCTID:19594009
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0004925
name: submucosa of laryngopharynx
namespace: uberon
def: "A submucosa that is part of a hypopharynx [Obol]." [OBOL:automatic]
synonym: "hypopharynx submucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx submucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "submucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "tela submucosa (pars laryngea pharyngis)" EXACT [FMA:55072]
xref: FMA:55072
xref: SCTID:47496006
is_a: UBERON:0004924 ! submucosa of pharynx
relationship: part_of UBERON:0001051 ! hypopharynx

[Term]
id: UBERON:0004926
name: submucosa of cystic duct
namespace: uberon
def: "A submucosa that is part of a cystic duct [Obol]." [OBOL:automatic]
synonym: "cystic duct submucosa" EXACT [OBOL:automatic]
synonym: "cystic ductal submucosa" EXACT [FMA:18013]
xref: FMA:18013
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001152 ! cystic duct

[Term]
id: UBERON:0004927
name: submucosa of cecum
namespace: uberon
def: "A submucosa that is part of a cecum [Obol]." [OBOL:automatic]
synonym: "caecum submucosa" EXACT [OBOL:automatic]
synonym: "cecum submucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of caecum" EXACT [OBOL:automatic]
synonym: "submucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
xref: FMA:14999
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001153 ! caecum

[Term]
id: UBERON:0004928
name: submucosa of appendix
namespace: uberon
def: "A submucosa that is part of an appendix [Obol]." [OBOL:automatic]
synonym: "appendiceal submucosa" EXACT [FMA:14992]
synonym: "appendix submucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "submucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "submucosa of vermix" EXACT [OBOL:automatic]
synonym: "vermiform appendix submucosa" EXACT [OBOL:automatic]
synonym: "vermix submucosa" EXACT [OBOL:automatic]
xref: FMA:14992
xref: SCTID:86833001
is_a: UBERON:0004927 ! submucosa of cecum
relationship: part_of UBERON:0001154 ! appendix

[Term]
id: UBERON:0004929
name: submucosa of ascending colon
namespace: uberon
def: "A submucosa that is part of an ascending colon [Obol]." [OBOL:automatic]
synonym: "ascending colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15006
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001156 ! ascending colon

[Term]
id: UBERON:0004930
name: submucosa of transverse colon
namespace: uberon
def: "A submucosa that is part of a transverse colon [Obol]." [OBOL:automatic]
synonym: "transverse colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15013
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001157 ! transverse colon

[Term]
id: UBERON:0004931
name: submucosa of descending colon
namespace: uberon
def: "A submucosa that is part of a descending colon [Obol]." [OBOL:automatic]
synonym: "descending colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15020
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001158 ! descending colon

[Term]
id: UBERON:0004932
name: submucosa of sigmoid colon
namespace: uberon
def: "A submucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic]
synonym: "sigmoid colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15027
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001159 ! sigmoid colon

[Term]
id: UBERON:0004933
name: submucosa of fundus of stomach
namespace: uberon
def: "A submucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) submucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach submucosa" EXACT [OBOL:automatic]
synonym: "stomach fundus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "submucosa of stomach fundus" EXACT [OBOL:automatic]
xref: FMA:17058
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001160 ! fundus of stomach

[Term]
id: UBERON:0004934
name: submucosa of body of stomach
namespace: uberon
def: "A submucosa that is part of a body of stomach [Obol]." [OBOL:automatic]
synonym: "body of stomach submucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) submucosa" EXACT [OBOL:automatic]
synonym: "gastric body submucosa" EXACT [OBOL:automatic]
synonym: "stomach body submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "submucosa of gastric body" EXACT [OBOL:automatic]
synonym: "submucosa of stomach body" EXACT [OBOL:automatic]
xref: FMA:17059
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001161 ! body of stomach

[Term]
id: UBERON:0004935
name: submucosa of cardia of stomach
namespace: uberon
def: "A submucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardia of stomach submucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach submucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia submucosa" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) submucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "submucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "submucosa of stomach cardiac region" EXACT [OBOL:automatic]
xref: FMA:17457
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach

[Term]
id: UBERON:0004936
name: submucosa of pyloric antrum
namespace: uberon
def: "A submucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic]
synonym: "antrum of stomach submucosa" EXACT [OBOL:automatic]
synonym: "pyloric antrum submucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
xref: FMA:17060
is_a: UBERON:0004937 ! submucosa of pylorus
relationship: part_of UBERON:0001165 ! pyloric antrum

[Term]
id: UBERON:0004937
name: submucosa of pylorus
namespace: uberon
def: "A submucosa that is part of a pylorus [Obol]." [OBOL:automatic]
synonym: "pyloric part of stomach submucosa" EXACT [OBOL:automatic]
synonym: "pylorus submucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of stomach pyloric region" EXACT [OBOL:automatic]
xref: FMA:17462
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001166 ! pylorus

[Term]
id: UBERON:0004938
name: submucosa of biliary tree
namespace: uberon
def: "A submucosa that is part of a biliary tree [Obol]." [OBOL:automatic]
synonym: "biliary tract submucosa" EXACT [OBOL:automatic]
synonym: "biliary tree submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of biliary tract" EXACT [OBOL:automatic]
xref: FMA:18009
relationship: part_of UBERON:0001173 ! biliary tree

[Term]
id: UBERON:0004939
name: submucosa of common bile duct
namespace: uberon
def: "A submucosa that is part of a common bile duct [Obol]." [OBOL:automatic]
synonym: "common bile duct submucosa" EXACT [OBOL:automatic]
synonym: "common bile ductal submucosa" EXACT [FMA:18011]
synonym: "ductus choledochus (biliaris) submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
xref: FMA:18011
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001174 ! common bile duct

[Term]
id: UBERON:0004940
name: submucosa of common hepatic duct
namespace: uberon
def: "A submucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic]
synonym: "common hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "common hepatic ductal submucosa" EXACT [FMA:18014]
synonym: "hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of hepatic duct" EXACT [OBOL:automatic]
xref: FMA:18014
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001175 ! common hepatic duct

[Term]
id: UBERON:0004941
name: submucosa of right hepatic duct
namespace: uberon
def: "A submucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic]
synonym: "right hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "right hepatic ductal submucosa" EXACT [FMA:18015]
xref: FMA:18015
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001176 ! right hepatic duct

[Term]
id: UBERON:0004942
name: submucosa of left hepatic duct
namespace: uberon
def: "A submucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic]
synonym: "left hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "left hepatic ductal submucosa" EXACT [FMA:18017]
xref: FMA:18017
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001177 ! left hepatic duct

[Term]
id: UBERON:0004946
name: submucosa of ileum
namespace: uberon
def: "A submucosa that is part of a ileum [Obol]." [OBOL:automatic]
synonym: "ileal submucosa" EXACT [FMA:14957]
synonym: "ileum submucosa" EXACT [OBOL:automatic]
xref: FMA:14957
xref: SCTID:65374006
is_a: UBERON:0001205 ! submucosa of small intestine
relationship: part_of UBERON:0002116 ! ileum

[Term]
id: UBERON:0004982
name: mucosa of epiglottis
namespace: uberon
def: "A mucosa that is part of a epiglottis [Obol]." [OBOL:automatic]
synonym: "epiglottis mucosa" EXACT [OBOL:automatic]
synonym: "epiglottis mucosa of organ" EXACT [OBOL:automatic]
synonym: "epiglottis mucous membrane" EXACT [OBOL:automatic]
synonym: "epiglottis organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of epiglottis" EXACT [OBOL:automatic]
synonym: "mucous membrane of epiglottis" EXACT [OBOL:automatic]
synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic]
xref: FMA:64015
xref: SCTID:156751001
is_a: UBERON:0004987 ! mucosa of laryngopharynx
relationship: part_of UBERON:0000388 ! epiglottis

[Term]
id: UBERON:0004987
name: mucosa of laryngopharynx
namespace: uberon
def: "A mucosa that is part of a hypopharynx [Obol]." [OBOL:automatic]
synonym: "hypopharynx mucosa" EXACT [OBOL:automatic]
synonym: "hypopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "hypopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "hypopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "laryngopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of laryngopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of laryngopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of laryngopharynx" EXACT [OBOL:automatic]
xref: FMA:55030
xref: SCTID:362126008
is_a: UBERON:0000355 ! pharyngeal mucosa
relationship: part_of UBERON:0001051 ! hypopharynx

[Term]
id: UBERON:0004988
name: mucosa of cystic duct
namespace: uberon
def: "A mucosa that is part of a cystic duct [Obol]." [OBOL:automatic]
synonym: "cystic duct mucosa" EXACT [OBOL:automatic]
synonym: "cystic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "cystic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "cystic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "cystic ductal mucosa" EXACT [FMA:14690]
synonym: "mucosa of organ of cystic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of cystic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of cystic duct" EXACT [OBOL:automatic]
xref: FMA:14690
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001152 ! cystic duct

[Term]
id: UBERON:0004989
name: mucosa of appendix
namespace: uberon
def: "A mucosa that is part of an appendix [Obol]." [OBOL:automatic]
synonym: "appendiceal mucous membrane" EXACT [FMA:14991]
synonym: "appendix mucosa" EXACT [OBOL:automatic]
synonym: "appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix mucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "caecal appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "caecal appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vermix" EXACT [OBOL:automatic]
synonym: "mucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucosa of vermix" EXACT [OBOL:automatic]
synonym: "mucous membrane of appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of vermix" EXACT [OBOL:automatic]
synonym: "organ mucosa of appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of vermix" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucosa" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "vermiform appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "vermix mucosa" EXACT [OBOL:automatic]
synonym: "vermix mucosa of organ" EXACT [OBOL:automatic]
synonym: "vermix mucous membrane" EXACT [OBOL:automatic]
synonym: "vermix organ mucosa" EXACT [OBOL:automatic]
xref: FMA:14991
xref: SCTID:362155000
is_a: UBERON:0000314 ! cecum mucosa
relationship: part_of UBERON:0001154 ! appendix

[Term]
id: UBERON:0004990
name: mucosa of ascending colon
namespace: uberon
def: "A mucosa that is part of an ascending colon [Obol]." [OBOL:automatic]
synonym: "ascending colon mucosa" EXACT [OBOL:automatic]
synonym: "ascending colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "ascending colon mucous membrane" EXACT [OBOL:automatic]
synonym: "ascending colon organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ascending colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of ascending colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of ascending colon" EXACT [OBOL:automatic]
xref: FMA:15005
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001156 ! ascending colon

[Term]
id: UBERON:0004991
name: mucosa of transverse colon
namespace: uberon
def: "A mucosa that is part of a transverse colon [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of transverse colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of transverse colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of transverse colon" EXACT [OBOL:automatic]
synonym: "transverse colon mucosa" EXACT [OBOL:automatic]
synonym: "transverse colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "transverse colon mucous membrane" EXACT [OBOL:automatic]
synonym: "transverse colon organ mucosa" EXACT [OBOL:automatic]
xref: FMA:15012
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001157 ! transverse colon

[Term]
id: UBERON:0004992
name: mucosa of descending colon
namespace: uberon
def: "A mucosa that is part of a descending colon [Obol]." [OBOL:automatic]
synonym: "descending colon mucosa" EXACT [OBOL:automatic]
synonym: "descending colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "descending colon mucous membrane" EXACT [OBOL:automatic]
synonym: "descending colon organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of descending colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of descending colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of descending colon" EXACT [OBOL:automatic]
xref: FMA:15019
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001158 ! descending colon

[Term]
id: UBERON:0004993
name: mucosa of sigmoid colon
namespace: uberon
def: "A mucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of sigmoid colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of sigmoid colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of sigmoid colon" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucosa" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucous membrane" EXACT [OBOL:automatic]
synonym: "sigmoid colon organ mucosa" EXACT [OBOL:automatic]
xref: FMA:15026
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001159 ! sigmoid colon

[Term]
id: UBERON:0004994
name: mucosa of fundus of stomach
namespace: uberon
def: "A mucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucosa" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucosa of organ" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucous membrane" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) organ mucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "fundus of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fundus of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach fundus" EXACT [OBOL:automatic]
synonym: "mucosa of stomach fundus" EXACT [OBOL:automatic]
synonym: "mucous membrane of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucous membrane of fundus of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach fundus" EXACT [OBOL:automatic]
synonym: "organ mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "organ mucosa of fundus of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach fundus" EXACT [OBOL:automatic]
synonym: "stomach fundus mucosa" EXACT [OBOL:automatic]
synonym: "stomach fundus mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach fundus mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach fundus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17053
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001160 ! fundus of stomach

[Term]
id: UBERON:0004995
name: mucosa of body of stomach
namespace: uberon
def: "A mucosa that is part of a body of stomach [Obol]." [OBOL:automatic]
synonym: "body of stomach mucosa" EXACT [OBOL:automatic]
synonym: "body of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "body of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "body of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucosa of organ" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucous membrane" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) organ mucosa" EXACT [OBOL:automatic]
synonym: "gastric body mucosa" EXACT [OBOL:automatic]
synonym: "gastric body mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastric body mucous membrane" EXACT [OBOL:automatic]
synonym: "gastric body organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucosa of gastric body" EXACT [OBOL:automatic]
synonym: "mucosa of organ of body of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastric body" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach body" EXACT [OBOL:automatic]
synonym: "mucosa of stomach body" EXACT [OBOL:automatic]
synonym: "mucous membrane of body of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastric body" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach body" EXACT [OBOL:automatic]
synonym: "organ mucosa of body of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "organ mucosa of gastric body" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach body" EXACT [OBOL:automatic]
synonym: "stomach body mucosa" EXACT [OBOL:automatic]
synonym: "stomach body mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach body mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach body organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17054
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001161 ! body of stomach

[Term]
id: UBERON:0004996
name: mucosa of cardia of stomach
namespace: uberon
def: "A mucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardia of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardia of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardial part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastric cardia mucous membrane" EXACT [OBOL:automatic]
synonym: "gastric cardia organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucous membrane of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardia of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "organ mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa of organ" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucous membrane" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach cardiac region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17456
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach

[Term]
id: UBERON:0004997
name: mucosa of pyloric antrum
namespace: uberon
def: "A mucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic]
synonym: "antrum of stomach mucosa" EXACT [OBOL:automatic]
synonym: "antrum of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "antrum of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "antrum of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucous membrane of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "organ mucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of pyloric antrum" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucosa" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucosa of organ" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucous membrane" EXACT [OBOL:automatic]
synonym: "pyloric antrum organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17055
is_a: UBERON:0004998 ! mucosa of pylorus
relationship: part_of UBERON:0001165 ! pyloric antrum

[Term]
id: UBERON:0004998
name: mucosa of pylorus
namespace: uberon
def: "A mucosa that is part of a pylorus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pylorus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucous membrane of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of pylorus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "organ mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of pylorus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa of organ" EXACT [OBOL:automatic]
synonym: "pylorus mucous membrane" EXACT [OBOL:automatic]
synonym: "pylorus organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach pyloric region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17461
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001166 ! pylorus

[Term]
id: UBERON:0004999
name: mucosa of biliary tree
namespace: uberon
def: "A mucosa that is part of a biliary tree [Obol]." [OBOL:automatic]
synonym: "biliary tract mucosa" EXACT [OBOL:automatic]
synonym: "biliary tract mucosa of organ" EXACT [OBOL:automatic]
synonym: "biliary tract mucous membrane" EXACT [OBOL:automatic]
synonym: "biliary tract organ mucosa" EXACT [OBOL:automatic]
synonym: "biliary tree mucosa" EXACT [OBOL:automatic]
synonym: "biliary tree mucosa of organ" EXACT [OBOL:automatic]
synonym: "biliary tree mucous membrane" EXACT [OBOL:automatic]
synonym: "biliary tree organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of biliary tract" EXACT [OBOL:automatic]
synonym: "mucosa of organ of biliary tract" EXACT [OBOL:automatic]
synonym: "mucosa of organ of biliary tree" EXACT [OBOL:automatic]
synonym: "mucous membrane of biliary tract" EXACT [OBOL:automatic]
synonym: "mucous membrane of biliary tree" EXACT [OBOL:automatic]
synonym: "organ mucosa of biliary tract" EXACT [OBOL:automatic]
synonym: "organ mucosa of biliary tree" EXACT [OBOL:automatic]
xref: FMA:14695
relationship: part_of UBERON:0001173 ! biliary tree

[Term]
id: UBERON:0005000
name: mucosa of common bile duct
namespace: uberon
def: "A mucosa that is part of a common bile duct [Obol]." [OBOL:automatic]
synonym: "common bile duct mucosa" EXACT [OBOL:automatic]
synonym: "common bile duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "common bile duct mucous membrane" EXACT [OBOL:automatic]
synonym: "common bile duct organ mucosa" EXACT [OBOL:automatic]
synonym: "common bile ductal mucosa" EXACT [FMA:14688]
synonym: "ductus choledochus (biliaris) mucosa" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) mucosa of organ" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) mucous membrane" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of common bile duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "mucous membrane of common bile duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "organ mucosa of common bile duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
xref: FMA:14688
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001174 ! common bile duct

[Term]
id: UBERON:0005001
name: mucosa of common hepatic duct
namespace: uberon
def: "A mucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic]
synonym: "common hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "common hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "common hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "common hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "common hepatic ductal mucosa" EXACT [FMA:14691]
synonym: "hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of hepatic duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of common hepatic duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of common hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of common hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of hepatic duct" EXACT [OBOL:automatic]
xref: FMA:14691
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001175 ! common hepatic duct

[Term]
id: UBERON:0005002
name: mucosa of right hepatic duct
namespace: uberon
def: "A mucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of right hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of right hepatic duct" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "right hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "right hepatic ductal mucosa" EXACT [FMA:14692]
xref: FMA:14692
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001176 ! right hepatic duct

[Term]
id: UBERON:0005003
name: mucosa of left hepatic duct
namespace: uberon
def: "A mucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic]
synonym: "left hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "left hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "left hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "left hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "left hepatic ductal mucosa" EXACT [FMA:14693]
synonym: "mucosa of organ of left hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of left hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of left hepatic duct" EXACT [OBOL:automatic]
xref: FMA:14693
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001177 ! left hepatic duct

[Term]
id: UBERON:0005019
name: mucosa of palate
namespace: uberon
def: "A mucosa that is part of a palate [Obol]." [OBOL:automatic]
synonym: "mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of palate" EXACT [OBOL:automatic]
synonym: "mucosa of organ of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral roof" EXACT [OBOL:automatic]
synonym: "mucous membrane of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of roof of mouth" EXACT [OBOL:automatic]
synonym: "oral roof mucosa" EXACT [OBOL:automatic]
synonym: "oral roof mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral roof mucous membrane" EXACT [OBOL:automatic]
synonym: "oral roof organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "organ mucosa of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "palate mucosa" EXACT [OBOL:automatic]
synonym: "palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "palate mucous membrane" EXACT [OBOL:automatic]
synonym: "palate organ mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59765
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0005020
name: mucosa of tongue
namespace: uberon
def: "A mucosa that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "lingual mucosa" EXACT [FMA:54807]
synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic]
synonym: "mucous membrane of tongue" EXACT [OBOL:automatic]
synonym: "organ mucosa of tongue" EXACT [OBOL:automatic]
synonym: "tongue mucosa" EXACT [OBOL:automatic]
synonym: "tongue mucosa of organ" EXACT [OBOL:automatic]
synonym: "tongue mucous membrane" EXACT [OBOL:automatic]
synonym: "tongue organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa linguae" EXACT [FMA:54807, FMA:TA]
xref: EFO:0002553
xref: FMA:54807
xref: SCTID:362092002
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0005022
name: mucosa of nasopharynx
namespace: uberon
def: "A mucosa that is part of a nasopharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of nasopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of rhinopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of rhinopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucosa" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "nasopharynx mucosa" EXACT [OBOL:automatic]
synonym: "nasopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "nasopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of rhinopharynx" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucosa" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "rhinopharynx organ mucosa" EXACT [OBOL:automatic]
xref: FMA:54971
xref: SCTID:361938001
is_a: UBERON:0000355 ! pharyngeal mucosa
relationship: part_of UBERON:0001728 ! nasopharynx

[Term]
id: UBERON:0005023
name: mucosa of oropharynx
namespace: uberon
def: "A mucosa that is part of a oropharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oropharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of oropharynx" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucosa" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "oral part of pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of oropharynx" EXACT [OBOL:automatic]
synonym: "oropharynx mucosa" EXACT [OBOL:automatic]
synonym: "oropharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "oropharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic]
xref: FMA:54933
xref: SCTID:144632009
is_a: UBERON:0000355 ! pharyngeal mucosa
is_a: UBERON:0004786 ! gastrointestinal system mucosa
relationship: part_of UBERON:0001729 ! oropharynx

[Term]
id: UBERON:0005024
name: mucosa of soft palate
namespace: uberon
def: "A mucosa that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of soft palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of soft palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate mucosa" EXACT [OBOL:automatic]
synonym: "soft palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "soft palate mucous membrane" EXACT [OBOL:automatic]
synonym: "soft palate organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59784
xref: SCTID:245842003
is_a: UBERON:0005019 ! mucosa of palate
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0005025
name: mucosa of uvula
namespace: uberon
def: "A mucosa that is part of a uvula [Obol]." [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa of organ" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucous membrane" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "uvula mucosa" EXACT [OBOL:automatic]
synonym: "uvula mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula of palate mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate organ mucosa" EXACT [OBOL:automatic]
synonym: "uvula organ mucosa" EXACT [OBOL:automatic]
xref: FMA:60030
is_a: UBERON:0005024 ! mucosa of soft palate
relationship: part_of UBERON:0001734 ! uvula

[Term]
id: UBERON:0005031
name: mucosa of upper lip
namespace: uberon
def: "A mucosa that is part of a upper lip [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of upper lip" EXACT [OBOL:automatic]
synonym: "mucous membrane of upper lip" EXACT [OBOL:automatic]
synonym: "organ mucosa of upper lip" EXACT [OBOL:automatic]
synonym: "upper lip mucosa" EXACT [OBOL:automatic]
synonym: "upper lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "upper lip mucous membrane" EXACT [OBOL:automatic]
synonym: "upper lip organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59832
xref: ncithesaurus:Mucosa_of_the_Upper_Lip
xref: SCTID:362088009
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0001834 ! upper lip

[Term]
id: UBERON:0005032
name: mucosa of lower lip
namespace: uberon
def: "A mucosa that is part of a lower lip [Obol]." [OBOL:automatic]
synonym: "lower lip mucosa" EXACT [OBOL:automatic]
synonym: "lower lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "lower lip mucous membrane" EXACT [OBOL:automatic]
synonym: "lower lip organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lower lip" EXACT [OBOL:automatic]
synonym: "mucous membrane of lower lip" EXACT [OBOL:automatic]
synonym: "organ mucosa of lower lip" EXACT [OBOL:automatic]
xref: FMA:59833
xref: ncithesaurus:Mucosa_of_the_Lower_Lip
xref: SCTID:362089001
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0001835 ! lower lip

[Term]
id: UBERON:0005033
name: mucosa of gallbladder
namespace: uberon
def: "A mucosa that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "gall bladder mucosa" EXACT [OBOL:automatic]
synonym: "gall bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "gall bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "gall bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "gallbladder mucous membrane" EXACT [OBOL:automatic]
synonym: "gallbladder organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gall bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gallbladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of gall bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of gallbladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of gallbladder" EXACT [OBOL:automatic]
synonym: "tunica mucosa (vesica biliaris)" EXACT [FMA:14662]
synonym: "tunica mucosa vesicae biliaris" EXACT [FMA:14662, FMA:TA]
xref: FMA:14662
xref: SCTID:362196002
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0002110 ! gallbladder

[Term]
id: UBERON:0005046
name: mucosa of hard palate
namespace: uberon
def: "A mucosa that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mucosa" EXACT [OBOL:automatic]
synonym: "hard palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "hard palate mucous membrane" EXACT [OBOL:automatic]
synonym: "hard palate organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hard palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of hard palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of hard palate" EXACT [OBOL:automatic]
xref: FMA:59783
xref: SCTID:245841005
is_a: UBERON:0005019 ! mucosa of palate
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0005050
name: liver papillary process
namespace: uberon
synonym: "papillary process of caudate lobe of liver" EXACT [FMA:14506]
synonym: "processus papillaris" EXACT [FMA:14506]
xref: FMA:14506
xref: MA:0001643
xref: SCTID:271187002
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0005052
name: gizzard
namespace: uberon
def: "The muscular enlargement of the alimentary canal that has usually thick muscular walls and a tough horny lining for grinding the food and when the crop is present follows it and the proventriculus." [BTO:0000520, Wikipedia:Gizzard]
comment: AO notes: BTO also includes: A thickened part of the alimentary canal in some animals (as an insect or an earthworm) that is similar in function to the crop of a bird. However, we are refering to the Aves structure here
subset: organ_slim
synonym: "gastric mill" EXACT [Wikipedia:Gizzard]
synonym: "gigerium" EXACT [Wikipedia:Gizzard]
synonym: "ventriculus" RELATED [Wikipedia:Gizzard]
xref: BTO:0000520
xref: GAID:1238
xref: MESH:A.13.853.363
xref: ncithesaurus:Gizzard
is_a: UBERON:0000945 {source="cjm"} ! stomach
relationship: has_part UBERON:0008861 {source="Wikipedia"} ! pyloric gastric gland
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0005087
name: tooth placode
namespace: uberon
def: "An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]." [GO:0060790]
synonym: "dental placode" EXACT [Obol:automatic]
synonym: "dental primordium" EXACT [ZFA:0001153]
synonym: "odontogenic placode" EXACT [Obol:automatic]
synonym: "tooth germ" EXACT [ZFA:0001153]
xref: BTO:0001511
xref: MESH:A.14.254.900.720
xref: TAO:0001153
xref: ZFA:0001153
relationship: develops_into UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003351 {source="ZFA"} ! pharyngeal epithelium

[Term]
id: UBERON:0005171
name: hepatic duct
namespace: uberon
def: "The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same
subset: vertebrate_core
xref: EHDAA2:0000741
xref: EHDAA:3049
xref: EMAPA:16843
xref: EMAPA:18672
xref: galen:HepaticDuct
xref: MA:0000357
xref: ncithesaurus:Hepatic_Duct
xref: OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA
xref: SCTID:245399002
xref: TAO:0001100
xref: VHOG:0000219
xref: ZFA:0001100
is_a: UBERON:0002394 ! bile duct
relationship: continuous_with UBERON:0002107 ! liver
relationship: part_of UBERON:0001173 ! biliary tree

[Term]
id: UBERON:0005176
name: tooth enamel organ
namespace: uberon
def: "Epithelial cells surrounding the dental papilla and differentiated into three layers: the inner enamel epithelium, consisting of ameloblasts which eventually form the enamel, and the enamel pulp and external enamel epithelium, both of which atrophy and disappear before and upon eruption of the tooth, respectively[MESH]." [MESH:A.14.254.900.720.265, Wikipedia:Enamel_organ_organ]
comment: Development notes: NOT develeops_from NC[UBERONREF:0000002]. Alternate definitioon: A cellular aggregation seen in histologic sections of a developing tooth. It lies above a condensation of ectomesenchymal cells called the dental papilla. Historically, enamel organ has been the term to describe this structure, but it was attempted unsuccessfully in recent years to change the name to dental organ in order to better represent its multiple functions apart from enamel formation[WP]
subset: vertebrate_core
synonym: "dental organ" EXACT [ZFA:0005138]
synonym: "enamel organ" EXACT [MP:0010747]
synonym: "organum enameleum" RELATED LATIN [Wikipedia:Enamel_organ]
xref: BTO:0001722
xref: MA:0001604
xref: MESH:A.14.254.900.720.265
xref: SCTID:362863002
xref: TAO:0005138
xref: ZFA:0005138
property_value: RO:0002161 NCBITaxon:8782
is_a: UBERON:0005087 {source="BTO"} ! tooth placode
relationship: develops_from UBERON:0005087 {source="ZFA"} ! tooth placode

[Term]
id: UBERON:0005196
name: spleen germinal center
namespace: uberon
def: "A germinal center that is part of the spleen. The spleen germinal center is located in a secondary B follicle in the white pulp of the spleen." [CL:tm, https://github.com/cmungall/uberon/issues/6]
synonym: "germinal center of spleen" EXACT []
synonym: "spleen follicle center" EXACT [MP:0008474]
synonym: "spleen GC" EXACT [MP:0008474]
synonym: "splenic germinal center" EXACT [MP:0008474]
xref: MA:0000764
xref: ncithesaurus:Spleen_Germinal_Center
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle

[Term]
id: UBERON:0005207
name: tonsil capsule
namespace: uberon
def: "A capsule that is part of a tonsil [Obol]." [OBOL:automatic]
xref: MA:0000776
relationship: part_of UBERON:0002372 ! tonsil

[Term]
id: UBERON:0005221
name: liver right lobe parenchyma
namespace: uberon
def: "A parenchyma that is part of a right lobe of liver [Obol]." [OBOL:automatic]
synonym: "parenchyma of right lobe of liver" EXACT [FMA:71657]
xref: EHDAA2:0001010
xref: EMAPA:18317
xref: FMA:71657
xref: VHOG:0000840
is_a: UBERON:0001280 ! liver parenchyma
relationship: part_of UBERON:0001114 ! right lobe of liver

[Term]
id: UBERON:0005222
name: liver left lobe parenchyma
namespace: uberon
def: "A parenchyma that is part of a left lobe of liver [Obol]." [OBOL:automatic]
synonym: "parenchyma of left lobe of liver" EXACT [FMA:71658]
xref: EHDAA2:0001002
xref: EMAPA:18310
xref: FMA:71658
xref: VHOG:0000839
is_a: UBERON:0001280 ! liver parenchyma
relationship: part_of UBERON:0001115 ! left lobe of liver

[Term]
id: UBERON:0005334
name: oral lamina propria
namespace: uberon
synonym: "lamina propria of oral mucosa" EXACT []
xref: EMAPA:26947
relationship: part_of UBERON:0003343 ! mucosa of oral region

[Term]
id: UBERON:0005353
name: spleen perifollicular zone
namespace: uberon
def: "the compartment located between the marginal zone and the red pulp harboring scattered B and T lymphocytes[MP]." [MP:0010245]
comment: todo - check spleen marginal sinus
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0005402
name: philtrum
namespace: uberon
synonym: "lip philtrum" EXACT [MA:0001577]
xref: EHDAA2:0001462
xref: EHDAA:9280
xref: EMAPA:17926
xref: FMA:59819
xref: MA:0001577
xref: SCTID:362087004
xref: VHOG:0000862
relationship: part_of UBERON:0001834 ! upper lip

[Term]
id: UBERON:0005409
name: gastrointestinal system
namespace: uberon
comment: note that many anatomy ontologies consider this synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class. We have one entity that is part of both gastrointestinal and hepatobiliary systems: hepatopancreatic ampulla
synonym: "alimentary system" RELATED [MA:0000323]
synonym: "alimentary tract" RELATED [MA:0000323]
synonym: "gastro-intestinal system" RELATED [FMA:71132]
synonym: "gastrointestinal (GI) tract" RELATED [GAID:294]
synonym: "gastrointestinal system" RELATED [FMA:71132]
synonym: "gastrointestinal tract" RELATED INCONSISTENT [FMA:71132]
synonym: "GI tract" RELATED [GAID:294]
xref: BTO:0000058
xref: EHDAA2:0000110
xref: EHDAA:514
xref: EMAPA:16246
xref: EV:0100056
xref: FMA:71132
xref: GAID:294
xref: MA:0000323
xref: MESH:A.03.492
xref: ncithesaurus:Gastrointestinal_System
xref: SCTID:373871007
xref: VHOG:0000412
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0005429
name: dorsal pancreatic duct
namespace: uberon
alt_id: UBERON:0005603
def: "Most people have just one pancreatic duct. However, some have an additional accessory pancreatic duct also called the Duct of Santorini, which connects straight to the duodenum at the minor duodenal papilla. Both these ducts connect to the second part (the vertical one) of the duodenum. However, the Duct of Santorini, which bypasses the Ampulla of Vater, is non-functional whereas the Duct of Wirsung is functional and carries the digestive enzymes released by the pancreas. It is named for Giovanni Domenico Santorini." [Wikipedia:Accessory_pancreatic_duct]
synonym: "accessory pancreatic duct" EXACT [MA:0000125]
synonym: "accessory pancreatic duct of santorini" RELATED [Wikipedia:Accessory_pancreatic_duct]
synonym: "duct of Santorini" EXACT [FMA:14534, Wikipedia:Accessory_pancreatic_duct]
synonym: "ductus pancreaticus accessorius" RELATED LATIN [Wikipedia:Accessory_pancreatic_duct]
synonym: "pancreatic duct of santorini" RELATED [Wikipedia:Accessory_pancreatic_duct]
synonym: "Santorini's duct" EXACT [FMA:14534]
xref: EHDAA2:0001372
xref: EHDAA:3013
xref: EHDAA:9188
xref: EMAPA:17505
xref: EMAPA:17512
xref: EMAPA:18818
xref: EMAPA:18825
xref: FMA:14534
xref: MA:0000125
xref: RETIRED_EHDAA2:0000417
xref: SCTID:245386000
xref: VHOG:0000255
is_a: UBERON:0007329 {source="FMA"} ! pancreatic duct

[Term]
id: UBERON:0005452
name: hepatic plate
namespace: uberon
def: "Composed of hepatocytes, usually only one cell thick. The spaces between hepatic plates are occupied by sinusoids." [ISBN:0387949542]
synonym: "hepatic cord" EXACT [FMA:14655]
synonym: "hepatic lamina" EXACT [FMA:14655]
synonym: "lamina hepatica" EXACT [FMA:14655]
synonym: "liver cell plate" EXACT [FMA:14655]
xref: FMA:14655
relationship: part_of UBERON:0001172 ! hepatic acinus
relationship: part_of UBERON:0004647 ! liver lobule

[Term]
id: UBERON:0005477
name: stomach fundus epithelium
namespace: uberon
synonym: "epithelium of fundus of stomach" EXACT [FMA:17277]
synonym: "gastric epithelium of fundus" EXACT [FMA:17277]
synonym: "gastric fundus epithelium" EXACT [FMA:17277]
xref: EHDAA2:0001921
xref: FMA:17277
xref: VHOG:0000878
is_a: UBERON:0001276 ! epithelium of stomach
relationship: part_of UBERON:0001160 ! fundus of stomach
relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach

[Term]
id: UBERON:0005493
name: hyoid muscle
namespace: uberon
def: "A group of muscles used in mastication and swallowing. These muscles are attached to the hyoid bone, which is suspended in the neck and forms the base of the tongue and larynx. The muscles are divided into suprahyoid (superior) or infrahyoid (inferior) groups relative to the bone[unvetted]." [http://www.answers.com/topic/hyoid-muscles]
comment: Editor notes - grouping for all vertebrates dubious
subset: grouping_class
subset: vertebrate_core
synonym: "hyoid muscles" EXACT [ZFA:0000521]
xref: EFO:0003536
xref: EHDAA2:0000794
xref: ncithesaurus:Hyoid_Muscle
xref: SCTID:244823009
xref: TAO:0000521
xref: ZFA:0000521
is_a: UBERON:0000933 ! pharyngeal muscle
relationship: part_of UBERON:0004467 {source="ZFA"} ! musculature of pharynx

[Term]
id: UBERON:0005562
name: thymus primordium
namespace: uberon
def: "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]." [ZFA:0001077]
comment: Editor notes: we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Development notes: Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution. Taxon notes: variability of developmental origin: In fish, thymic primordia are generated by all the pouches except the first. However, in avians the thymus arises from pouches 3 and 4, whereas in humans it is only generated by the third pouch[PMID:16313389] The thymus arises from the second pouch in frogs, 2-6 in cartilaginous fish, 2-3 in reptiles, 3 or 4 in bony fish, birds and mammals. The final number is variable - 5 paired organs in sharks, 4 in caecilians, 3 in urodeles, 1 in many teleost, anurans and many mammals[ISBN-10:0781714125]
subset: vertebrate_core
synonym: "thymic primordium" EXACT [Obol:automatic]
synonym: "thymic rudiment" EXACT [ZFA:0001077]
xref: EFO:0003622
xref: EHDAA2:0002023
xref: EHDAA:2969
xref: EMAPA:17523
xref: EMAPA:18536
xref: TAO:0001077
xref: ZFA:0001077
is_a: UBERON:0003351 ! pharyngeal epithelium
relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm
relationship: part_of UBERON:0003295 {source="EHDAA2"} ! pharyngeal gland

[Term]
id: UBERON:0005597
name: lung primordium
namespace: uberon
def: "A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum." [XAO:0001002]
comment: todo - check AAO diverticulum
synonym: "lateral diverticula" RELATED [XAO:0001002]
xref: AAO:0011059
xref: XAO:0001002
relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut
relationship: part_of UBERON:0008947 ! respiratory primordium

[Term]
id: UBERON:0005602
name: dorsal mesogastrium
namespace: uberon
def: "The portion of mesentery attached to the greater curvature of the stomach is named the dorsal mesentery (or dorsal mesogastrium, when referring to the portion at the stomach), and the part which suspends the colon is termed the mesocolon. The dorsal mesogastrium develops into the greater omentum." [Wikipedia:Dorsal_mesentery]
synonym: "dorsal mesentery" RELATED [Wikipedia:Dorsal_mesentery]
xref: EHDAA2:0000416
xref: EHDAA:3001
xref: EMAPA:17025
xref: EMAPA:18903
xref: MA:0001618
xref: ncithesaurus:Dorsal_Mesogastrium
xref: VHOG:0000352
is_a: UBERON:0003281 {source="MA"} ! mesentery of stomach
relationship: part_of UBERON:0003281 {source="EHDAA2"} ! mesentery of stomach

[Term]
id: UBERON:0005604
name: hepatic duct extrahepatic part
namespace: uberon
xref: EHDAA2:0000742
xref: EHDAA:3051
xref: EMAPA:16844
xref: MA:0001636
xref: VHOG:0000215
relationship: part_of UBERON:0003703 ! extrahepatic bile duct
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0005605
name: hepatic duct intrahepatic part
namespace: uberon
xref: EHDAA2:0000743
xref: EHDAA:3053
xref: EMAPA:16845
xref: MA:0001637
xref: VHOG:0000216
relationship: part_of UBERON:0003704 ! intrahepatic bile duct
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0005619
name: secondary palatal shelf
namespace: uberon
def: "the outgrowths of the embryonic maxillae that come together during prenatal development to form the secondary palate" [http://medical-dictionary.thefreedictionary.com/palatal+shelves]
comment: todo - check EMAPA
synonym: "lateral palatine process" EXACT [http://medical-dictionary.thefreedictionary.com/palatal+shelf]
synonym: "palatal shelf" EXACT [MA:0001581]
synonym: "palatal shelves" RELATED PLURAL []
synonym: "secondary palatal shelf" EXACT []
xref: EHDAA2:0001364
xref: EHDAA:9283
xref: EMAPA:17362
xref: EMAPA:17930
xref: MA:0001581
xref: VHOG:0000378
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0005626
name: ventral mesogastrium
namespace: uberon
def: "Ventral mesentery is the part of the peritoneum closest to the navel." [Wikipedia:Ventral_mesentery]
comment: "The primitive gut is enveloped by a mesentery that has a dorsal and a ventral aspect. The ventral mesentery degenerates during development with the exception of the foregut ventral mesentery, which develops into specialized structures (see foregut embryology)" [http://sprojects.mmi.mcgill.ca/embryology/gi/pgm.htm]. todo - check
subset: vertebrate_core
synonym: "ventral mesentery" RELATED [Wikipedia:Ventral_mesentery]
xref: EHDAA2:0002176
xref: EHDAA:3005
xref: EMAPA:17026
xref: EMAPA:18907
xref: MA:0001621
xref: ncithesaurus:Ventral_Mesogastrium
xref: TAO:0005133
xref: VHOG:0000351
xref: ZFA:0005133
is_a: UBERON:0003281 ! mesentery of stomach
relationship: part_of UBERON:0003281 {source="EHDAA2"} ! mesentery of stomach

[Term]
id: UBERON:0005636
name: caecum epithelium
namespace: uberon
xref: EHDAA2:0000209
is_a: UBERON:0000397 ! colonic epithelium
relationship: part_of UBERON:0001153 ! caecum

[Term]
id: UBERON:0005637
name: pyloric region epithelium
namespace: uberon
xref: EHDAA2:0001582
xref: EMAPA:17633
xref: RETIRED_EHDAA2:0001927
is_a: UBERON:0001276 ! epithelium of stomach
relationship: part_of UBERON:0001166 ! pylorus

[Term]
id: UBERON:0005643
name: foregut duodenum epithelium
namespace: uberon
xref: EHDAA2:0000563
is_a: UBERON:0008346 ! duodenal epithelium
relationship: part_of UBERON:0003286 ! duodenum of foregut

[Term]
id: UBERON:0005644
name: midgut duodenum epithelium
namespace: uberon
xref: EHDAA2:0001192
is_a: UBERON:0003352 ! epithelium of midgut
is_a: UBERON:0008346 ! duodenal epithelium
relationship: part_of UBERON:0003287 ! duodenum of midgut

[Term]
id: UBERON:0005653
name: upper jaw molar epithelium
namespace: uberon
xref: EHDAA2:0002126
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0003666 ! upper jaw molar

[Term]
id: UBERON:0005654
name: lower jaw molar epithelium
namespace: uberon
xref: EHDAA2:0001026
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0003667 ! lower jaw molar

[Term]
id: UBERON:0005658
name: secondary palatal shelf epithelium
namespace: uberon
synonym: "palatal shelf epithelium" RELATED [VHOG:0001040]
xref: EHDAA2:0001365
xref: EMAPA:17363
xref: EMAPA:17931
xref: VHOG:0001040
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0005619 ! secondary palatal shelf

[Term]
id: UBERON:0005677
name: caecum mesentery
namespace: uberon
xref: RETIRED_EHDAA2:0000210
is_a: UBERON:0003396 ! mesentery of colon
relationship: part_of UBERON:0001153 ! caecum

[Term]
id: UBERON:0005685
name: midgut dorsal mesentery
namespace: uberon
xref: EMAPA:16722
xref: EMAPA:17040
xref: EMAPA:17046
xref: EMAPA:18671
xref: RETIRED_EHDAA2:0001187
xref: SCTID:361434009
relationship: part_of UBERON:0001045 ! midgut

[Term]
id: UBERON:0005686
name: caecum dorsal mesentery
namespace: uberon
xref: RETIRED_EHDAA2:0000208
relationship: part_of UBERON:0001153 ! caecum

[Term]
id: UBERON:0005700
name: upper jaw molar mesenchyme
namespace: uberon
xref: EHDAA2:0002127
relationship: part_of UBERON:0003666 ! upper jaw molar

[Term]
id: UBERON:0005701
name: lower jaw molar mesenchyme
namespace: uberon
xref: EHDAA2:0001027
relationship: part_of UBERON:0003667 ! lower jaw molar

[Term]
id: UBERON:0005704
name: secondary palatal shelf mesenchyme
namespace: uberon
synonym: "palatal shelf mesenchyme" RELATED [VHOG:0001063]
xref: EHDAA2:0001366
xref: EHDAA:9287
xref: EMAPA:17364
xref: EMAPA:17932
xref: VHOG:0001063
relationship: part_of UBERON:0005619 ! secondary palatal shelf

[Term]
id: UBERON:0005707
name: upper jaw incisor mesenchyme
namespace: uberon
xref: EHDAA2:0002123
is_a: UBERON:0003317 ! mesenchyme of incisor

[Term]
id: UBERON:0005708
name: lower jaw incisor mesenchyme
namespace: uberon
xref: EHDAA2:0001023
is_a: UBERON:0003317 ! mesenchyme of incisor

[Term]
id: UBERON:0005709
name: upper jaw incisor epithelium
namespace: uberon
xref: EHDAA2:0002122
is_a: UBERON:0003355 ! epithelium of incisor

[Term]
id: UBERON:0005710
name: lower jaw incisor epithelium
namespace: uberon
xref: EHDAA2:0001022
is_a: UBERON:0003355 ! epithelium of incisor

[Term]
id: UBERON:0005711
name: foregut duodenum mesentery
namespace: uberon
xref: EHDAA2:0000564
is_a: UBERON:0003397 ! mesentery of duodenum
intersection_of: UBERON:0003397 ! mesentery of duodenum
intersection_of: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0005712
name: midgut duodenum mesentery
namespace: uberon
xref: EHDAA2:0001193
is_a: UBERON:0003284 ! mesentery of midgut
is_a: UBERON:0003397 ! mesentery of duodenum
intersection_of: UBERON:0003397 ! mesentery of duodenum
intersection_of: part_of UBERON:0001045 ! midgut
relationship: part_of UBERON:0001045 ! midgut

[Term]
id: UBERON:0005867
name: mandibular prominence
namespace: uberon
def: "The mandibular prominence is an embryological structure which gives rise to the lower portion of the face. The mandible and lower lip derive from it. It is innervated by the mandibular nerve." [Wikipedia:Mandibular_prominence]
comment: Editor note: check develops_from
synonym: "mandibular process" RELATED [Wikipedia:Mandibular_prominence]
synonym: "mandibular swelling" RELATED [UBERON:cjm]
synonym: "prominentia mandibularis" RELATED LATIN [Wikipedia:Mandibular_prominence]
xref: EHDAA2:0001061
xref: EHDAA:5871
xref: EMAPA:17355
xref: ncithesaurus:Mandibular_Prominence
relationship: part_of UBERON:0000166 ! oral opening

[Term]
id: UBERON:0005868
name: maxillary prominence
namespace: uberon
def: "Continuous with the dorsal end of the mandibular arch, and growing forward from its cephalic border, is a triangular process, the maxillary process (or maxillary prominence), the ventral extremity of which is separated from the mandibular arch by a '>' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve." [Wikipedia:Maxillary_prominence]
synonym: "maxillary process" EXACT [EHDAA2:0001070]
synonym: "maxillary process of embryo" EXACT [SCTID:346355001]
synonym: "prominentia maxilaris" RELATED LATIN [Wikipedia:Maxillary_prominence]
xref: EHDAA2:0001070
xref: EHDAA:5877
xref: EMAPA:17359
xref: ncithesaurus:Maxillary_Prominence
xref: SCTID:346355001
relationship: part_of UBERON:0000166 ! oral opening

[Term]
id: UBERON:0005886
name: pharyngeal arch 3-7 skeleton
namespace: uberon
synonym: "branchial arch skeleton" RELATED SENSU [XAO:0003180]
xref: TAO:0000095
xref: XAO:0003180
xref: ZFA:0000095
relationship: part_of UBERON:0008896 {source="ZFA"} ! pharyngeal arch 3-7
relationship: subdivision_of UBERON:0008896 ! pharyngeal arch 3-7

[Term]
id: UBERON:0005905
name: insect labrum
namespace: uberon
def: "A mouthpart of insects." [Wikipedia:Insect_mouthparts#Labrum]
comment: Editor notes: this term should be ceded to the arthropod anatomy ontology
synonym: "insect labium" EXACT [BTO:0004104]
synonym: "labium" RELATED [BTO:0004104]
synonym: "labrum" RELATED [BTO:0004104]
xref: BTO:0004104
xref: FBbt:00004522
xref: HAO:0000456
xref: TADS:0000039
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0006081
name: fundus of gallbladder
namespace: uberon
def: "The fundus of gallbladder is the portion of the gallbladder which lies the farthest from the cystic duct. It is covered with peritoneum. A traditional cholecystectomy is most commonly performed from the infundibulum to the fundus. It's at the same level as the transpyloric plane." [Wikipedia:Fundus_of_gallbladder]
synonym: "fundus of the gallbladder" RELATED [Wikipedia:Fundus_of_gallbladder]
synonym: "fundus vesicae biliaris" RELATED LATIN [Wikipedia:Fundus_of_gallbladder]
synonym: "gallbladder fundus" EXACT [FMA:14536]
synonym: "gallbladder fundus" RELATED [Wikipedia:Fundus_of_gallbladder]
xref: FMA:14536
xref: ncithesaurus:Gallbladder_Fundus
xref: SCTID:245391004
relationship: part_of UBERON:0002110 ! gallbladder

[Term]
id: UBERON:0006211
name: buccopharyngeal membrane
namespace: uberon
def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane]
subset: emapa_ehdaa2
synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane]
xref: EHDAA2:0000189
xref: EHDAA:536
xref: EMAPA:16259
xref: SCTID:361412007
xref: VHOG:0000380
relationship: overlaps UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0006264 {source="EHDAA2"} ! mouth-foregut junction

[Term]
id: UBERON:0006217
name: cloacal membrane
namespace: uberon
def: "The cloacal membrane is the membrane that covers the embryonic cloaca when still in the development of the urinary and reproductive organs. It is formed by ectoderm and endoderm coming into contact with each other. After separation of the cloaca into the urogenital and anal parts, the cloacal membrane, in turn, is separated into a urogenital membrane and an anal membrane." [Wikipedia:Cloacal_membrane]
subset: emapa_ehdaa2
synonym: "membrana cloacalis" RELATED LATIN [Wikipedia:Cloacal_membrane]
xref: EHDAA2:0000257
xref: EHDAA:214
xref: EHDAA:2933
xref: EMAPA:16832
xref: ncithesaurus:Cloacal_Membrane
xref: SCTID:308826008
xref: VHOG:0001198
relationship: part_of UBERON:0000163 ! embryonic cloaca

[Term]
id: UBERON:0006223
name: dorsal meso-oesophagus
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA:2945
xref: EMAPA:16704
xref: EMAPA:16837
xref: EMAPA:18865
xref: MA:0001570
xref: RETIRED_EHDAA2:0000412
relationship: part_of UBERON:0003283 ! mesentery of oesophagus

[Term]
id: UBERON:0006235
name: foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000569
xref: EHDAA:526
xref: EMAPA:16363
xref: VHOG:0000291
relationship: adjacent_to UBERON:0001041 ! foregut
relationship: adjacent_to UBERON:0001045 ! midgut
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0006242
name: gall bladder primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000700
xref: EHDAA:3047
xref: EMAPA:16713
xref: EMAPA:16842
xref: XAO:0004205
relationship: develops_into UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0004912 ! biliary bud

[Term]
id: UBERON:0006260
name: lingual swellings
namespace: uberon
comment: the collection consisting of the two lateral swellings and the medial swelling
subset: emapa_ehdaa2
synonym: "lingual swelling" RELATED [EHDAA2:0000996]
xref: EHDAA2:0000996
xref: EMAPA:17186
xref: VHOG:0000449
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue

[Term]
id: UBERON:0006264
name: mouth-foregut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA:534
xref: EMAPA:16258
xref: RETIRED_EHDAA2:0001205
xref: VHOG:0000592
relationship: adjacent_to UBERON:0000165 ! mouth
relationship: adjacent_to UBERON:0001041 ! foregut
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0006272
name: oronasal cavity
namespace: uberon
def: "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html]
subset: emapa_ehdaa2
xref: EHDAA2:0001331
xref: EHDAA:5882
xref: EMAPA:17200
xref: VHOG:0001352
relationship: developmentally_replaces UBERON:0009672 ! oronasal membrane
relationship: part_of UBERON:0000166 ! oral opening

[Term]
id: UBERON:0006293
name: spleen primordium
namespace: uberon
def: "A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium." [ISBN:0123747295]
comment: todo - check difference between splenic and spleen in EMAPA
synonym: "left spleen primordium" NARROW [XAO:0000326]
synonym: "splenic primordium" EXACT [EHDAA2:0001904]
xref: EHDAA2:0001904
xref: EHDAA:3003
xref: EMAPA:18535
xref: EMAPA:18659
xref: XAO:0000326
relationship: part_of UBERON:0005602 {source="EHDAA2-modified"} ! dorsal mesogastrium

[Term]
id: UBERON:0006297
name: sublingual gland primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001935
xref: EHDAA:7989
xref: EMAPA:17752
relationship: develops_into UBERON:0001832 ! sublingual gland
relationship: part_of UBERON:0001044 ! salivary gland

[Term]
id: UBERON:0006298
name: submandibular gland primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001939
xref: EHDAA:9255
xref: EMAPA:17755
relationship: develops_into UBERON:0001736 ! submandibular gland
relationship: part_of UBERON:0001044 ! salivary gland

[Term]
id: UBERON:0006329
name: superior pharyngeal constrictor
namespace: uberon
def: "The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]." [Wikipedia:Superior_pharyngeal_constrictor_muscle]
synonym: "constrictor muscle of pharynx superior" EXACT [FMA:46621]
synonym: "musculus constrictor pharyngis superior" EXACT [FMA:46621, FMA:TA]
synonym: "musculus constrictor pharyngis superior" RELATED LATIN [Wikipedia:Superior_pharyngeal_constrictor_muscle]
synonym: "superior constrictor" EXACT [FMA:46621]
synonym: "superior constrictor muscle" EXACT [ncithesaurus:Superior_Constrictor_Muscle]
synonym: "superior constrictor of pharynx" EXACT [FMA:46621]
synonym: "superior constrictor pharyngeus" EXACT [FMA:46621]
xref: EMAPA:18966
xref: FMA:46621
xref: MA:0002280
xref: ncithesaurus:Superior_Constrictor_Muscle
xref: SCTID:244800006
is_a: UBERON:0001569 ! constrictor muscle of pharynx

[Term]
id: UBERON:0006330
name: anterior lingual gland
namespace: uberon
synonym: "anterior lingual salivary gland" EXACT [FMA:59796]
synonym: "lingual salivary gland" EXACT [FMA:59796]
xref: FMA:59796
xref: MA:0002701
xref: ncithesaurus:Lingual_Salivary_Gland
xref: SCTID:362179003
is_a: UBERON:0001830 ! minor salivary gland
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0006359
name: mesoduodenum
namespace: uberon
xref: EMAPA:17183
xref: EMAPA:17198
xref: EMAPA:19082
xref: MA:0001556
is_a: UBERON:0001170 ! mesentery of small intestine

[Term]
id: UBERON:0006360
name: intermolar eminence
namespace: uberon
xref: EMAPA:18273
xref: EMAPA:18876
xref: MA:0001590
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006562
name: pharynx
namespace: uberon
def: "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
comment: Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
subset: grouping_class
subset: uberon_slim
xref: AAO:0000967
xref: FBbt:00005380
xref: MAT:0000049
xref: MIAA:0000049
xref: SCTID:181211006
xref: WBbt:0003681
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: continuous_with UBERON:0001043 ! esophagus

[Term]
id: UBERON:0006574
name: pectinate line
namespace: uberon
def: "The pectinate line (anocutaneous line, dentate line, anorectal junction) is a line which divides the upper 2/3rds and lower 1/3rd of the anal canal. Developmentally, this line represents the hindgut-proctodeum junction. It is an important anatomical landmark, and several distinctions can be made based upon the location of a structure relative to this line:" [Wikipedia:Pectinate_line]
comment: FMA also has FMA:29321 but it's not clear how this differs
synonym: "dentate line" RELATED [Wikipedia:Pectinate_line]
synonym: "Hilton's 'white line'" RELATED [EMAPA:19159]
synonym: "linea anocutanea" RELATED LATIN [Wikipedia:Pectinate_line]
synonym: "pectinate line of anal canal" EXACT [FMA:75383]
synonym: "recto-anal junction" RELATED [Wikipedia:Pectinate_line]
synonym: "site of anal membrane" RELATED [EMAPA:19159]
xref: EMAPA:19159
xref: FMA:75383
xref: ncithesaurus:Pectinate_Line
xref: SCTID:245445008
xref: Wikipedia:Pectinate_line
relationship: adjacent_to UBERON:0001046 ! hindgut
relationship: part_of UBERON:0000159 ! anal canal

[Term]
id: UBERON:0006672
name: incisive canal
namespace: uberon
xref: EMAPA:19034
xref: FMA:59107
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0006676
name: muscularis mucosa
namespace: uberon
def: "The lamina muscularis mucosae (or muscularis mucosa) is the thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa. In the gastrointestinal tract, the term mucosa or \"mucous membrane\" refers to the combination of epithelium, lamina propria, and (where it occurs) muscularis mucosa. The etymology suggests this since the Latin names translate to \"the mucosa's own special layer\" (lamina propria mucosae) and \"muscular layer of the mucosa\" (lamina muscularis mucosae). The muscularis mucosa is composed of several thin layers of smooth muscle fibers oriented in different ways which keeps the mucosal surface and underlying glands in a constant state of gentle agitation to expel contents of glandular crypts and enhance contact between epithelium and the contents of the lumen." [Wikipedia:Muscularis_mucosae]
synonym: "laminar muscularis mucosa" RELATED [Wikipedia:Muscularis_mucosae]
synonym: "muscularis mucosae" EXACT [FMA:68413]
xref: BTO:0004839
xref: FMA:68413
xref: galen:MuscularisMucosae
xref: ncithesaurus:Muscularis_Mucosa
xref: SCTID:370140002
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0006688
name: sublingual caruncle
namespace: uberon
def: "The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity." [Wikipedia:Sublingual_caruncle]
synonym: "caruncula sublingualis" RELATED LATIN [Wikipedia:Sublingual_caruncle]
xref: EMAPA:18961
xref: FMA:77273
xref: SCTID:85139009
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006689
name: frenulum of tongue
namespace: uberon
def: "The frenulum of tongue (or lingual frenulum) is the frenulum of the tongue, a small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum" BROAD []
synonym: "frenulum lingu%c3%a6" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum linguae" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum linguae" RELATED LATIN [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum of the tongue" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "lingual frenulum" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "lingual frenum" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "tongue frenulum" EXACT [FMA:54659]
xref: EMAPA:18656
xref: EMAPA:18874
xref: FMA:54659
xref: ncithesaurus:Frenulum
is_a: UBERON:0005020 ! mucosa of tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006727
name: liver left lateral lobe
namespace: uberon
synonym: "lateral segment of left lobe of liver" EXACT [FMA:14501]
synonym: "lateral segment of liver" EXACT [FMA:14501]
synonym: "segmentum laterale (lobus hepatis sinister)" EXACT [FMA:14501]
xref: FMA:14501
xref: MA:0001641
xref: SCTID:271288003
is_a: UBERON:0001115 ! left lobe of liver

[Term]
id: UBERON:0006728
name: liver left medial lobe
namespace: uberon
synonym: "medial segment of left lobe of liver" EXACT [FMA:14500]
synonym: "medial segment of liver" EXACT [FMA:14500]
synonym: "segmentum mediale (lobus hepatis sinister)" EXACT [FMA:14500]
xref: FMA:14500
xref: MA:0001642
xref: SCTID:271085007
is_a: UBERON:0001115 ! left lobe of liver

[Term]
id: UBERON:0006729
name: liver perisinusoidal space
namespace: uberon
synonym: "Disse's space" EXACT [FMA:63162]
synonym: "hepatic perisinusoidal space" EXACT [FMA:63162]
synonym: "perisinusoidal space of Disse" EXACT [FMA:63162]
synonym: "space of Disse" EXACT [FMA:63162]
xref: FMA:63162
xref: MA:0002497
xref: SCTID:17779003
relationship: part_of UBERON:0004647 ! liver lobule

[Term]
id: UBERON:0006756
name: median lingual swelling
namespace: uberon
def: "During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]." [Wikipedia:Tuberculum_impar]
comment: The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview]
synonym: "median lingual swelling" EXACT [EHDAA2:0001081]
synonym: "median tongue bud" EXACT [http://emedicine.medscape.com/article/845125-overview]
synonym: "tuberculum impar" EXACT []
synonym: "tuberculum linguale mediale" EXACT [Wikipedia:Tuberculum_impar]
xref: EHDAA2:0001081
xref: EMAPA:17187
xref: SCTID:308821003
xref: VHOG:0000730
relationship: part_of UBERON:0006260 {source="EHDAA2"} ! lingual swellings

[Term]
id: UBERON:0006757
name: lateral lingual swelling
namespace: uberon
def: "During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line." [Wikipedia:Lateral_lingual_swelling]
comment: Structure notes: paired
synonym: "lateral lingual prominence" RELATED []
synonym: "lateral swellings" RELATED [Wikipedia:Lateral_lingual_swelling]
synonym: "tuberculum laterale" RELATED [Wikipedia:Lateral_lingual_swelling]
synonym: "tuberculum linguale laterale" RELATED LATIN [Wikipedia:Lateral_lingual_swelling]
xref: EHDAA2:0000911
xref: EMAPA:17189
xref: VHOG:0000731
relationship: part_of UBERON:0006260 ! lingual swellings

[Term]
id: UBERON:0006831
name: pre-tracheal muscle
namespace: uberon
synonym: "pretracheal muscle" EXACT [MA:0001798]
xref: EMAPA:25142
xref: MA:0001798
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0006841
name: central vein of liver
namespace: uberon
def: "Vein that is central to a lobule in the liver." [ZFA:0005168]
subset: vertebrate_core
synonym: "terminal branch of hepatic vein" EXACT [FMA:17544]
synonym: "terminal hepatic venule" EXACT [FMA:17544]
synonym: "vena centralis (Hepar)" EXACT [FMA:17544]
xref: FMA:17544
xref: SCTID:272023004
xref: TAO:0005168
xref: ZFA:0005168
is_a: UBERON:0001143 ! hepatic vein
relationship: part_of UBERON:0004647 ! liver lobule

[Term]
id: UBERON:0006844
name: cusp of tooth
namespace: uberon
def: "Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth." [ZFA:0005434]
subset: vertebrate_core
synonym: "tooth cusp" EXACT [FMA:56481]
xref: FMA:56481
xref: ncithesaurus:Tooth_Cusp
xref: SCTID:362107000
xref: TAO:0001973
xref: ZFA:0005434
relationship: part_of UBERON:0003675 ! tooth crown

[Term]
id: UBERON:0006866
name: terminal part of digestive tract
namespace: uberon
xref: FBbt:00005756
xref: WBbt:0005773
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: continuous_with UBERON:0001245 ! anus
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0006867
name: anal part of perineum
namespace: uberon
def: "The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]." [Wikipedia:Anal_triangle]
synonym: "anal region" BROAD [FMA:20347]
synonym: "anal triangle" EXACT [FMA:20347]
synonym: "regio analis" EXACT [FMA:20347, FMA:TA]
synonym: "regio analis" RELATED LATIN [Wikipedia:Anal_triangle]
xref: FMA:20347
xref: SCTID:243995004
relationship: contains UBERON:0000159 ! anal canal
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0006870
name: endostyle
namespace: uberon
def: "An endostyle is a longitudinal ciliated groove on the ventral wall of the pharynx which produces mucus to gather food particles. It is found in urochordates and cephalochordates, and in the larvae of lampreys. It aids in transporting food to the esophagus. It is also called the hypopharyngeal groove. The endostyle in larval lampreys (ammocetes) metamorphoses into the thyroid gland in adults, and is regarded as being homologous to the thyroid gland in vertebrates. However, Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates. Since the endostyle is found in the three branches of chordates, it is presumed to have arisen in the common ancestor of these taxa, along with a shift to internal feeding for extracting suspended food from the water." [Wikipedia:Endostyle]
comment: Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates[WP].
synonym: "hypopharyngeal groove" RELATED [BTO:0003173]
xref: ANISEED:1235299
xref: BTO:0003173
relationship: part_of UBERON:0006562 ! pharynx

[Term]
id: UBERON:0006877
name: vasculature of liver
namespace: uberon
comment: the EHDAA2 term and the FMA term may not be exact equivalents - check
synonym: "hepatic vasculature" EXACT [FMA:73748]
synonym: "liver vascular system" RELATED [EHDAA2:0003454]
xref: EHDAA2:0003454
xref: FMA:73748
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0006905
name: mandibular process mesenchyme
namespace: uberon
synonym: "mesenchyme of mandibular process" EXACT [EMAPA:17357]
synonym: "mesenchyme of mandibular prominence" EXACT [UBERON:cjm]
xref: EHDAA2:0001062
xref: EHDAA:5861
xref: EHDAA:5873
xref: EMAPA:17357
relationship: part_of UBERON:0005867 ! mandibular prominence

[Term]
id: UBERON:0006912
name: urinary bladder muscularis mucosa
namespace: uberon
synonym: "muscularis mucosa of bladder " BROAD [EMAPA:28619]
synonym: "muscularis mucosa of urinary bladder " EXACT [OBOL:automatic]
xref: EMAPA:28619
xref: MA:0002490
xref: ncithesaurus:Bladder_Muscularis_Mucosa
is_a: UBERON:0006676 ! muscularis mucosa

[Term]
id: UBERON:0006913
name: lip epithelium
namespace: uberon
xref: BTO:0004468
xref: TAO:0005334
xref: ZFA:0005334
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001833 ! lip

[Term]
id: UBERON:0006916
name: non-keratinized epithelium of tongue
namespace: uberon
xref: FMA:62130
is_a: UBERON:0006919 ! tongue squamous epithelium

[Term]
id: UBERON:0006918
name: parakeratinized epithelium of tongue
namespace: uberon
xref: FMA:74908
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006919
name: tongue squamous epithelium
namespace: uberon
comment: note this is a singleton subclass of tongue epithelium in MA
synonym: "squamous epithelium of tongue" EXACT [OBOL:automatic]
xref: MA:0002786
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006920
name: esophagus squamous epithelium
namespace: uberon
comment: MA introduces basal and squamous subtypes of esophagus epithelium; consider adding the FMA class 'epithelium of esophagus' here, because it is classified as squamous. BTO also has a singleton subclass
synonym: "esophageal squamous epithelium" RELATED [OBOL:automatic]
synonym: "squamous epithelium of esophagus" RELATED [OBOL:automatic]
synonym: "squamous oesophageal epithelium" RELATED [MA:0001567]
xref: BTO:0003635
xref: MA:0001567
xref: ncithesaurus:Esophageal_Squamous_Epithelium
is_a: UBERON:0001976 ! epithelium of esophagus
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0006921
name: stomach squamous epithelium
namespace: uberon
xref: MA:0001611
is_a: UBERON:0001276 ! epithelium of stomach
relationship: part_of UBERON:0000945 ! stomach

[Term]
id: UBERON:0006924
name: stomach glandular epithelium
namespace: uberon
def: "A glandular epithelium that lines the stomach. The stomach's glandular epithelium is characterized by the presence of gastric glands." [ISBN10:0073040584]
comment: Editor notes: we follow Kardong in treating the glandular epithelium as a distinct entity, and thus as an epithelium which has glands; FMA has 'epithelium of gastric gland', which is part of the gastric gland. Consider also: stomach glandular region as a part-of parent
synonym: "epithelium of gastric gland" NARROW [FMA:63458]
xref: EMAPA:17623
xref: FMA:63458
xref: MA:0002784
is_a: UBERON:0001276 ! epithelium of stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0006931 ! stomach glandular region mucosa

[Term]
id: UBERON:0006925
name: digestive gland
namespace: uberon
def: "A gland, such as the liver or pancreas, that secretes into the alimentary canal substances necessary for digestion." [The_American_Heritage_Dictionary_of_the_English_Language:Fourth_Edition._2000.]
subset: organ_slim
synonym: "digestive system gland" EXACT [AAO:0000130]
xref: AAO:0000130
xref: BTO:0000345
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0006931
name: stomach glandular region mucosa
namespace: uberon
comment: AO notes: MA also has 'stomach glandular region'
xref: MA:0001614
is_a: UBERON:0001199 ! mucosa of stomach

[Term]
id: UBERON:0006949
name: cervical loop
namespace: uberon
def: "The cervical loop is the location on an enamel organ in a developing tooth where the outer enamel epithelium and the inner enamel epithelium join. The cervical loop is a histologic term indicating a specific epithelial structure at the apical side of the tooth germ, consisting of loosely aggregated stellate reticulum in the center surrounded by stratum intermedium. These tissues are enveloped by a basal layer of epithelium known on the outside of the tooth as outer enamel epithelium and on the inside as inner enamel epithelium. During root formation the inner layers of epithelium disappear and only the basal layers are left creating Hertwig's Epithelial Root Sheath (HERS). At this point it is usually referred to as HERS instead of the cervical loop to indicate the structural difference[WP]." [Wikipedia:Cervical_loop]
is_a: UBERON:0003843 ! dental epithelium
relationship: part_of UBERON:0005176 ! tooth enamel organ

[Term]
id: UBERON:0006950
name: stellate reticulum
namespace: uberon
alt_id: UBERON:0007441
def: "The stellate reticulum is a group of cells located in the center of the enamel organ of a developing tooth. These cells are star shaped and synthesize glycosaminoglycans. As glycosamingoglycans are produced, water is drawn in between the cells and stretch them apart. As they are moved further away from one another, the stellate reticulum maintain contact with one another through desmosomes, resulting in their unique appearance. stellate reticulum is lost after the first layer of dentin is laid down. this brings cells in inner enamel epithelium closer to blood vessels at the periphery[WP]." [Wikipedia:Stellate_reticulum]
synonym: "reticulum stellatum" RELATED LATIN [Wikipedia:Stellate_reticulum]
xref: BTO:0003910
xref: ncithesaurus:Stellate_Reticulum
is_a: UBERON:0003843 ! dental epithelium
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ
relationship: part_of UBERON:0006949 ! cervical loop

[Term]
id: UBERON:0006951
name: inner dental epithelium
namespace: uberon
def: "Inner layer of the dental organ, composed of ameloblasts[ZFA]. The inner enamel epithelium, also known as the internal enamel epithelium, is a layer of cells located on the rim nearest the dental papilla of the enamel organ in a developing tooth. This layer is first seen during the bell stage. The location of the enamel organ where the outer and inner enamel epithelium join is called the cervical loop[WP]." [Wikipedia:Inner_enamel_epithelium, ZFIN:curator]
synonym: "epithelium enameleum internum" RELATED LATIN [Wikipedia:Inner_enamel_epithelium]
synonym: "inner enamel epithelium" EXACT [ZFA:0005136]
xref: BTO:0003463
xref: ncithesaurus:Inner_Enamel_Epithelium
xref: TAO:0005136
xref: ZFA:0005136
is_a: UBERON:0003843 {source="ZFA"} ! dental epithelium
relationship: part_of UBERON:0005176 ! tooth enamel organ

[Term]
id: UBERON:0006952
name: outer dental epithelium
namespace: uberon
def: "Outer layer of the dental organ[ZFA]. a layer of cuboidal cells located on the periphery of the enamel organ in a developing tooth. This layer is first seen during the bell stage." [Wikipedia:Outer_enamel_epithelium, ZFIN:curator]
synonym: "epithelium enameleum externum" RELATED LATIN [Wikipedia:Outer_enamel_epithelium]
synonym: "external dental epithelium" EXACT [BTO:0003462]
synonym: "external enamel epithelium" EXACT [Wikipedia:Outer_enamel_epithelium]
synonym: "outer enamel epithelium" EXACT [OBOL:automatic]
xref: BTO:0003462
xref: ncithesaurus:Outer_Enamel_Epithelium
xref: TAO:0005137
xref: ZFA:0005137
is_a: UBERON:0003843 {source="ZFA"} ! dental epithelium
relationship: part_of UBERON:0005176 ! tooth enamel organ

[Term]
id: UBERON:0006956
name: buccal mucosa
namespace: uberon
def: "The inner lining of the cheeks and lips." [Medical_Dictionary:http://www.medterms.com/]
xref: BTO:0003833
xref: FMA:59785
xref: ncithesaurus:Buccal_Mucosa
xref: SCTID:16811007
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0003729 ! mouth mucosa

[Term]
id: UBERON:0006957
name: submandibular gland primordium epithelium
namespace: uberon
xref: EHDAA2:0001940
xref: EHDAA:9257
xref: EMAPA:17756
is_a: UBERON:0004809 ! salivary gland epithelium
relationship: part_of UBERON:0006298 ! submandibular gland primordium

[Term]
id: UBERON:0006976
name: peptonephridium
namespace: uberon
def: "Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates." [BTO:0004280]
subset: organ_slim
synonym: "esophageal appendage" RELATED [BTO:0004280]
synonym: "oesophageal appendage" RELATED [BTO:0004280]
xref: BTO:0004280
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0007115
name: deciduous tooth
namespace: uberon
def: "One of the first set of teeth in the growth development of humans and many other mammals[WP]. The 20 teeth of the first dentition, which are shed and replaced by the permanent teeth, usually by the age of six years. All deciduous teeth are normally expected to erupt by the age of two and a half years[MESH]." [MESH:A.14.254.860.700, Wikipedia:Deciduous_teeth]
comment: GAT in FMA.
synonym: "dentes decidui" RELATED LATIN [Wikipedia:Deciduous_teeth]
synonym: "primary tooth" EXACT [FMA:55655]
synonym: "temporary tooth" EXACT [FMA:55655]
xref: FMA:55655
xref: GAID:1266
xref: MESH:A.14.254.860.700
xref: ncithesaurus:Temporary_Tooth
xref: SCTID:245612004
is_a: UBERON:0001091 ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0007116 ! primary dentition
relationship: part_of UBERON:0007116 ! primary dentition

[Term]
id: UBERON:0007116
name: primary dentition
namespace: uberon
def: "The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss." [MESH:A.14.254.245]
synonym: "baby teeth" EXACT [FMA:75151]
synonym: "deciduous dentition" RELATED [GAID:1252]
synonym: "deciduous teeth" EXACT [FMA:75151]
synonym: "dentes decidui" EXACT [FMA:75151, FMA:TA]
synonym: "milk teeth" EXACT [FMA:75151]
synonym: "primary teeth" EXACT [GAID:1266]
synonym: "primary teeth" EXACT [FMA:75151]
synonym: "set of deciduous teeth" EXACT [FMA:75151]
synonym: "set of primary teeth" EXACT [FMA:75151]
synonym: "tooth of primary dentition" EXACT []
xref: FMA:75151
xref: GAID:1252
xref: MESH:A.14.254.245
is_a: UBERON:0003672 ! dentition

[Term]
id: UBERON:0007120
name: premolar tooth
namespace: uberon
def: "The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4." [Wikipedia:Premolar]
synonym: "bicuspid" RELATED [Wikipedia:Premolar]
synonym: "bicuspid teeth" RELATED [Wikipedia:Premolar]
synonym: "bicuspid tooth" RELATED [Wikipedia:Premolar]
synonym: "bicuspids" RELATED [Wikipedia:Premolar]
synonym: "biscuspid" RELATED [Wikipedia:Premolar]
synonym: "dens premolaris" RELATED [Wikipedia:Premolar]
synonym: "dentes premolares" RELATED LATIN [Wikipedia:Premolar]
synonym: "dentes premolares" RELATED [Wikipedia:Premolar]
synonym: "first bicuspid" RELATED [Wikipedia:Premolar]
synonym: "first premolar" RELATED [Wikipedia:Premolar]
synonym: "mandibular bicuspid" RELATED [Wikipedia:Premolar]
synonym: "maxillary bicuspid" RELATED [Wikipedia:Premolar]
synonym: "maxillary premolar" RELATED [Wikipedia:Premolar]
synonym: "pm3 %28dentistry%29" RELATED [Wikipedia:Premolar]
synonym: "pr%c3%a6molares" RELATED [Wikipedia:Premolar]
synonym: "praemolares" RELATED [Wikipedia:Premolar]
synonym: "premolar teeth" RELATED [Wikipedia:Premolar]
synonym: "premolar tooth" RELATED [Wikipedia:Premolar]
synonym: "premolars" RELATED [Wikipedia:Premolar]
synonym: "second bicuspid" RELATED [Wikipedia:Premolar]
synonym: "second premolar" RELATED [Wikipedia:Premolar]
synonym: "secondary premolar tooth" EXACT [FMA:55637]
xref: FMA:55637
xref: GAID:1261
xref: MESH:A.14.254.860.150
xref: ncithesaurus:Bicuspid_Tooth
xref: SCTID:304572005
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0007177
name: lamina propria of mucosa of colon
namespace: uberon
synonym: "colonic lamina propria" EXACT [FMA:15657]
synonym: "lamina propria of colonic mucosa" EXACT [FMA:15657]
synonym: "lamina propria of colonic mucous membrane" EXACT [FMA:15657]
xref: EMAPA:27395
xref: FMA:15657
xref: SCTID:113284008
is_a: UBERON:0004780 ! gastrointestinal system lamina propria
relationship: part_of UBERON:0000317 ! colonic mucosa

[Term]
id: UBERON:0007178
name: muscularis mucosa of mucosa of colon
namespace: uberon
synonym: "lamina muscularis of colonic mucosa" EXACT [FMA:15656]
synonym: "lamina muscularis of colonic mucous membrane" EXACT [FMA:15656]
xref: EMAPA:27399
xref: FMA:15656
xref: SCTID:885000
is_a: UBERON:0001239 ! muscularis mucosae of large intestine
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0000317 ! colonic mucosa

[Term]
id: UBERON:0007250
name: lingual tonsil
namespace: uberon
def: "The lingual tonsils are rounded masses of lymphatic tissue that cover the posterior region of the tongue. They are on the dorsal surface at the base of the tongue. Their lymphatic tissue are dense and nodular, their surface is covered with stratified squamous epithelium which invaginates as a single crypt into each lingual tonsil. They are partially surrounded by connective tissue placing them in the group of Partially-Encapsulated Lymphatic Organs, tonsils, the only one of its kind. They have associated mucous glands which are drained by ducts directly into the single tonsillar crypt." [Wikipedia:Lingual_tonsils]
synonym: "lingual tonsillar tissue" EXACT [MA:0000773]
synonym: "tonsilla lingualis" RELATED LATIN [Wikipedia:Lingual_tonsils]
xref: FMA:54836
xref: MA:0000773
xref: ncithesaurus:Lingual_Tonsil
xref: SCTID:276957006
is_a: UBERON:0002372 ! tonsil

[Term]
id: UBERON:0007268
name: upper esophageal sphincter
namespace: uberon
def: "The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx." [Wikipedia:Upper_esophageal_sphincter]
synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter]
xref: ncithesaurus:Upper_Esophageal_Sphincter
xref: Wikipedia:Upper_esophageal_sphincter
is_a: UBERON:0007652 ! esophageal sphincter
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0007303
name: pharyngeal vasculature
namespace: uberon
synonym: "branchial vasculature" EXACT [ZFA:0005003]
xref: TAO:0005003
xref: ZFA:0005003
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0007329
name: pancreatic duct
namespace: uberon
def: "A duct that is part of the pancreas and connected to the duodenum." [UBERON:cjm, Wikipedia:Pancreatic_duct]
comment: note that this class groups together accessory (dorsal) and main (ventral) pancreatic ducts. AO notes: in EHDAA2, the dorsal and ventral ducts are classified as epithelial sacs - review after overhaul of duct/epithelia terms
subset: vertebrate_core
synonym: "duct of pancreas" EXACT [OBOL:automatic]
synonym: "ductus pancreaticus" RELATED LATIN [Wikipedia:Pancreatic_duct]
synonym: "pancreas duct" EXACT [OBOL:automatic]
xref: EHDAA:9194
xref: FMA:10419
xref: MA:0000124
xref: SCTID:181278006
xref: TAO:0001372
xref: ZFA:0001372
is_a: UBERON:0003928 {source="ZFA"} ! digestive system duct
relationship: continuous_with UBERON:0002114 ! duodenum

[Term]
id: UBERON:0007356
name: crop
namespace: uberon
def: "A pouched enlargement of the gullet of many birds that serves as a receptacle for food and for its preliminary maceration." [BTO:0000301, Wikipedia:Crop_(anatomy)#Birds]
comment: Editor notes: we follow WP and place as part of the esophagus. Taxon notes: Aves specific structure - consider adding functional grouping class
synonym: "esophageal diverticulum" BROAD []
xref: BTO:0000301
xref: SCTID:68028003
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0007357
name: proventriculus
namespace: uberon
def: "The glandular or true stomach of a bird that is situated between the crop and gizzard." [BTO:0001136, Wikipedia:Proventriculus]
comment: Taxon notes: consider extending to crocodilians
subset: organ_slim
xref: BTO:0001136
xref: GAID:1239
xref: MESH:A.13.853.710
xref: SCTID:63897003
is_a: UBERON:0000945 {source="cjm"} ! stomach
relationship: continuous_with UBERON:0005052 ! gizzard
relationship: continuous_with UBERON:0007356 ! crop
relationship: has_part UBERON:0010038 {source="Wikipedia"} ! fundic gastric gland

[Term]
id: UBERON:0007358
name: abomasum
namespace: uberon
def: "The fourth stomach of ruminating animals. It is also called the \"true\" stomach. It is an elongated pear-shaped sac lying on the floor of the abdomen, on the right-hand side, and roughly between the seventh and twelfth ribs. It leads to the beginning of the small intestine. (From Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.106, Wikipedia:Abomasum]
subset: organ_slim
synonym: "fourth stomach" RELATED [BTO:0000024]
synonym: "maw" RELATED [Wikipedia:Abomasum]
synonym: "read" RELATED [Wikipedia:Abomasum]
synonym: "rennet-bag" RELATED [Wikipedia:Abomasum]
xref: BTO:0000024
xref: GAID:1241
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.106
xref: ncithesaurus:Abomasum
xref: SCTID:410028001
is_a: UBERON:0007366 ! ruminant stomach
relationship: has_part UBERON:0006924 ! stomach glandular epithelium

[Term]
id: UBERON:0007359
name: ruminant forestomach
namespace: uberon
def: "Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, or omasum." [BTO:0000480]
comment: Development/homology notes: You will still see the statement in some texts that the parts of the forestomach are derived from the embryonic esophagus, and that's the reason why (like the esophagus) they're lined with stratified squamous epithelium. This is open to doubt. While there is no doubt that the rumen, reticulum, and omasum are all derived from the embryonic foregut, there is evidence to indicate that all three come from that an area of the foregut homologous to the part that develops into the single stomach of non-ruminants. If this is so, then the forestomach can be considered diverticula (or derivatives) of the stomach proper, not the esophagus, despite the nature of the lining -- http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab21/Examples/exrumen.htm
subset: organ_slim
synonym: "forestomach" BROAD SENSU [BTO:0000480]
xref: BTO:0000480
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
is_a: UBERON:0007366 ! ruminant stomach
relationship: develops_from UBERON:0001041 ! foregut
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium

[Term]
id: UBERON:0007361
name: ruminant reticulum
namespace: uberon
def: "The second stomach of ruminants. It lies almost in the midline in the front of the abdomen, in contact with the liver and diaphragm and communicates freely with the RUMEN via the ruminoreticular orifice. The lining of the reticulum is raised into folds forming a honeycomb pattern over the surface. (From Concise Veterinary Dictionary, 1988)" [MESH:A.13.869.697, Wikipedia:Reticulum_(anatomy)]
synonym: "reticulum" BROAD SENSU [BTO:0000347]
xref: BTO:0000347
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.697
xref: ncithesaurus:Reticulum
xref: SCTID:23703003
is_a: UBERON:0007359 ! ruminant forestomach
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium
relationship: part_of UBERON:0007364 ! reticulorumen

[Term]
id: UBERON:0007362
name: omasum
namespace: uberon
def: "The third stomach of ruminants, situated on the right side of the abdomen at a higher level than the fourth stomach and between this latter and the second stomach, with both of which it communicates. From its inner surface project large numbers of leaves or folia, each of which possesses roughened surfaces. In the center of each folium is a band of muscle fibers which produces a rasping movement of the leaf when it contracts. One leaf rubs against those on either side of it, and large particles of food material are ground down between the rough surfaces, preparatory to further digestion in the succeeeding parts of the alimentary canal. (Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.524, Wikipedia:Omasum]
synonym: "omasum" RELATED [MESH:A.13.869.524]
xref: BTO:0000348
xref: GAID:1242
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.524
xref: ncithesaurus:Omasum
xref: SCTID:410028001
is_a: UBERON:0007359 ! ruminant forestomach
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium

[Term]
id: UBERON:0007364
name: reticulorumen
namespace: uberon
def: "first chamber in the alimentary canal of ruminant animals. It is composed of the rumen and reticulum. The reticulum differs from the rumen with regard to the texture of its lining. The rumen wall is covered in small finger like projections called papillae, which are flattened, approximately 0.5 cm in length and 0.3 cm wide in cattle. The reticulum is lined with ridges that form a hexagonal honeycomb pattern. The ridges are approximately 0.1 - 0.2 mm wide and are raised 0.5 cm above the reticulum wall. The hexagons in the reticulum are approximately 2-5 cm wide in cattle. Despite the differences in the texture of the lining of the two parts of the reticulorumen, it represents one functional space. Microbial fermentation degrades ingested carbohydrates in the reticulorumen to the volatile fatty acids acetate, propionate and butyrate, and proteins to short peptides, amino acids and ammonia. This fermentation is anaerobic and allows the microbes in the reticulorumen to derive the energy and amino nitrogen in order that they can reproduce. Ruminants absorb the volatile fatty acids across the reticulorumen wall and use them for energy, while the microbes eventually flow out of the rumen into the remainder of the alimentary canal, where they are eventually digested and absorbed. The reticulum, at approximately 5-20 litres, is considerably smaller in capacity than the rumen, which is approximately 100-200 litres in cattle. The oesophageal groove, which links the oesophagus and the omasum is located in the reticulum[WP]." [Wikipedia:Reticulorumen]
synonym: "retriculo-rumen" EXACT []
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0007366 ! ruminant stomach

[Term]
id: UBERON:0007365
name: rumen
namespace: uberon
def: "The first stomach of ruminants. It lies on the left side of the body, occupying the whole of the left side of the abdomen and even stretching across the median plane of the body to the right side. It is capacious, divided into an upper and a lower sac, each of which has a blind sac at its posterior extremity. The rumen is lined by mucous membrane containing no digestive glands, but mucus-secreting glands are present in large numbers. Coarse, partially chewed food is stored and churned in the rumen until the animal finds circumstances convenient for rumination. When this occurs, little balls of food are regurgitated through the esophagus into the mouth, and are subjected to a second more thorough mastication, swallowed, and passed on into other parts of the compound stomach. (From Black's Veterinary Dictionary, 17th ed)." [MESH:A.13.869.804, Wikipedia:Rumen]
comment: Structure notes: There is no muscularis mucosae in the rumen
synonym: "paunch" RELATED [BTO:0001194]
xref: BTO:0001194
xref: GAID:1244
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.804
xref: ncithesaurus:Rumen
xref: SCTID:45138000
is_a: UBERON:0007359 ! ruminant forestomach
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium
relationship: part_of UBERON:0007364 ! reticulorumen

[Term]
id: UBERON:0007366
name: ruminant stomach
namespace: uberon
def: "The ruminants' stomach consists of four compartments: rumen, reticulum, omasum and abomasum. The first three compartments comprise the forestomach (proventriculus). They are lined with nonglandular membrane. The fourth compartment, the abomasum comprises the true stomach of the ruminants. It is lined with glandular mucous membrane. The rumen lies on the left of the abdominal cavity, the reticulum cranially and the omasum on the right. The abomasum lies ventrally, its proximal end lies ventral to the rumen, reticulum and omasum" [http://www.onemedicine.tuskegee.edu/DigestiveSystem/Stomach/Stomach_Ruminants.html]
comment: Editor notes: in future this ontology may distinguish between stomachs lined with glandular epithelium ("true" stomachs) and non-glandular
xref: GAID:1240
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869
is_a: UBERON:0000945 ! stomach

[Term]
id: UBERON:0007367
name: surface of tongue
namespace: uberon
synonym: "tongue surface" EXACT [FMA:54647]
xref: FMA:54647
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0007371
name: superior surface of tongue
namespace: uberon
synonym: "dorsal surface of tongue" EXACT [FMA:54646]
xref: FMA:54646
is_a: UBERON:0007367 ! surface of tongue

[Term]
id: UBERON:0007373
name: inferior surface of tongue
namespace: uberon
synonym: "ventral surface of tongue" EXACT [FMA:54648]
xref: FMA:54648
xref: SCTID:362100003
is_a: UBERON:0007367 ! surface of tongue

[Term]
id: UBERON:0007440
name: stratum intermedium
namespace: uberon
def: "The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ." [Wikipedia:Stratum_intermedium]
xref: BTO:0005009
xref: ncithesaurus:Stratum_Intermedium
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ

[Term]
id: UBERON:0007652
name: esophageal sphincter
namespace: uberon
comment: editor note - check for specific subtypes across species. Note mammals have upper and lower, but lower is really part of cardia and thus is not classified under here
synonym: "oesophagial sphincter" EXACT [ZFA:0000415]
xref: SCTID:277765007
xref: TAO:0000415
xref: ZFA:0000415
is_a: UBERON:0003832 ! esophagus muscle
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0007690
name: early pharyngeal endoderm
namespace: uberon
def: "." [http://dev.biologists.org/content/128/22/4573.full]
comment: relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'
synonym: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457]
synonym: "pharyngeal arch endoderm" RELATED []
synonym: "pharyngeal endoderm" RELATED [ZFA:0001104]
synonym: "pharyngeal region endoderm" RELATED [EHDAA2:0001456]
xref: EFO:0003626
xref: EHDAA2:0001457
xref: EHDAA:962
xref: TAO:0001104
xref: ZFA:0001104
relationship: part_of UBERON:0009722 {source="cjm"} ! entire pharyngeal arch endoderm

[Term]
id: UBERON:0007691
name: gustatory pore
namespace: uberon
def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project. " [http://www.mondofacto.com/facts/dictionary?gustatory+pore]
synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore]
synonym: "taste pore" EXACT [FMA:63589]
xref: FMA:63589
xref: http://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg
xref: ncithesaurus:Taste_Pore
xref: SCTID:368724008
relationship: continuous_with UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0001727 {source="FMA"} ! taste bud

[Term]
id: UBERON:0007774
name: secondary dentition
namespace: uberon
def: "The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.237]
synonym: "adult dentition" RELATED [GAID:1251]
synonym: "dentes permanentes" EXACT [FMA:75152, FMA:TA]
synonym: "permanent dentition" EXACT [GAID:1251]
synonym: "permanent teeth" EXACT [FMA:75152]
synonym: "secondary dentition" RELATED [GAID:1251]
synonym: "set of permanent teeth" EXACT [FMA:75152]
synonym: "set of secondary teeth" EXACT [FMA:75152]
xref: FMA:75152
xref: GAID:1251
xref: MESH:A.14.254.237
is_a: UBERON:0003672 {source="FMA"} ! dentition
intersection_of: UBERON:0003672 ! dentition
intersection_of: developmentally_replaces UBERON:0007116 ! primary dentition
relationship: developmentally_replaces UBERON:0007116 ! primary dentition

[Term]
id: UBERON:0007775
name: secondary tooth
namespace: uberon
def: "Permanent teeth are the second set of teeth formed in humans[WP]." [Wikipedia:Permanent_teeth]
comment: GAT in FMA
synonym: "dentes permanentes" RELATED LATIN [Wikipedia:Permanent_teeth]
synonym: "permanent tooth" EXACT [FMA:55654]
xref: FMA:55654
xref: ncithesaurus:Permanent_Tooth
xref: SCTID:245563006
is_a: UBERON:0001091 ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0007774 ! secondary dentition
relationship: part_of UBERON:0007774 ! secondary dentition

[Term]
id: UBERON:0007776
name: unerupted tooth
namespace: uberon
def: "A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group." [MESH:A.14.254.860.715]
synonym: "unerupted teeth" RELATED [GAID:1268]
xref: GAID:1268
xref: MESH:A.14.254.860.715
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0007799
name: mixed dentition
namespace: uberon
def: "The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.229]
synonym: "transitional dentition" EXACT [GAID:1250]
xref: GAID:1250
xref: MESH:A.14.254.229
xref: SCTID:245545006
is_a: UBERON:0003672 {source="GAID"} ! dentition

[Term]
id: UBERON:0008246
name: pyloric stomach
namespace: uberon
def: "The mouth of a starfish is located on the underside of the body, and opens through a short esophagus into firstly a cardiac stomach, and then, a second, pyloric stomach. Each arm also contains two pyloric caeca, long hollow tubes branching outwards from the pyloric stomach. Each pyloric caecum is lined by a series of digestive glands, which secrete digestive enzymes and absorb nutrients from the food. A short intestine runs from the upper surface of the pyloric stomach to open at an anus in the center of the upper body" [Wikipedia:Starfish]
subset: organ_slim
xref: BTO:0002121
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0008248
name: pyloric cecum
namespace: uberon
def: "The pyloric ceca (or digestive glands) and the cardiac stomach produce digestive enzymes in starfishes. Digested material is absorbed through the pyloric ceca for transport to the rest of the body. Each pyloric cecum extends the length of each arm." [BTO:0002120]
synonym: "pyloric caecum" EXACT [BTO:0002120]
xref: BTO:0002120
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0008250
name: cardiac stomach
namespace: uberon
def: "In starfishes the cardiac stomach is connected to a pyloric stomach which is located above it. Food can be brought into the stomach through the mouth or, in many species, the cardiac stomach can be extended out through the mouth to digest food outside the body. Suspension-feeding starfish use their tube feet to pass food to the mouth." [BTO:0002122]
subset: organ_slim
xref: BTO:0002122
is_a: UBERON:0004921 ! subdivision of digestive tract

[Term]
id: UBERON:0008253
name: Aristotle's lantern
namespace: uberon
def: "Within the mouth of a sea urchin is an elaborate five-sided jaw structure called Aristotles lantern that can be partially extruded from the mouth. It is able to grind up calcareous exoskeletons of plants and animals." [BTO:0001923, Wikipedia:Aristotle's_lantern]
synonym: "Aristotles lantern" EXACT [BTO:0001923]
xref: BTO:0001923
xref: http://animaldiversity.ummz.umich.edu/site/resources/biodidac/echino001B.gif/medium.jpg
relationship: part_of UBERON:0000165 {source="BTO"} ! mouth

[Term]
id: UBERON:0008266
name: periodontal ligament
namespace: uberon
def: "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP]." [BTO:0001020, https://github.com/cmungall/uberon/issues/21, Wikipedia:Periodontal_fiber]
comment: note FMA treats periodontium and periodontal ligament as the same
synonym: "alveolar periosteum" RELATED [BTO:0001020]
synonym: "alveolodental ligament" RELATED [BTO:0001020]
synonym: "alveolodental membrane" RELATED [BTO:0001020]
synonym: "desmodontium" RELATED [BTO:0001020]
synonym: "odontoperiosteum" RELATED [BTO:0001020]
synonym: "paradentium" RELATED [BTO:0001020]
synonym: "PDL" RELATED [Wikipedia:Periodontal_ligament]
synonym: "peridental membrane" RELATED [BTO:0001020]
synonym: "peridontal ligament" RELATED []
synonym: "peridontal membrane" RELATED [BTO:0001020]
synonym: "peridontium" RELATED [BTO:0001020]
xref: BTO:0001020
xref: GAID:1259
xref: MA:0002467
xref: SCTID:245775004
relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium

[Term]
id: UBERON:0008285
name: rumen epithelium
namespace: uberon
def: "The rumen epithelium is the tissue which lines the largest of the four fore stomachs in the ruminant animal -cows and sheep. Rumen epithelial cells are important because they are responsible for the absorption of nutrients from the rumen into the blood." [BTO:0001195, PMID:10764086]
xref: BTO:0001195
is_a: UBERON:0010040 {source="cjm"} ! stomach non-glandular epithelium
relationship: part_of UBERON:0007365 ! rumen

[Term]
id: UBERON:0008310
name: nasopharyngeal gland
namespace: uberon
subset: organ_slim
xref: FMA:55076
xref: SCTID:178973008
is_a: UBERON:0003295 ! pharyngeal gland
relationship: part_of UBERON:0001728 ! nasopharynx

[Term]
id: UBERON:0008342
name: intestinal villus of duodenum
namespace: uberon
xref: FMA:63300
is_a: UBERON:0001213 {source="FMA"} ! intestinal villus
relationship: part_of UBERON:0000320 {source="FMA"} ! duodenal mucosa

[Term]
id: UBERON:0008343
name: intestinal villus of jejunum
namespace: uberon
xref: FMA:63301
is_a: UBERON:0001213 {source="FMA"} ! intestinal villus
relationship: part_of UBERON:0000399 {source="FMA"} ! jejunal mucosa

[Term]
id: UBERON:0008344
name: intestinal villus of ileum
namespace: uberon
xref: FMA:63302
is_a: UBERON:0001213 {source="FMA"} ! intestinal villus
relationship: part_of UBERON:0000331 {source="FMA"} ! ileal mucosa

[Term]
id: UBERON:0008345
name: ileal epithelium
namespace: uberon
synonym: "epithelium of ileum" EXACT [FMA:17233]
xref: FMA:17233
xref: SCTID:47046000
is_a: UBERON:0001902 ! epithelium of small intestine
relationship: part_of UBERON:0002116 ! ileum
relationship: part_of UBERON:0008344 {source="FMA"} ! intestinal villus of ileum

[Term]
id: UBERON:0008346
name: duodenal epithelium
namespace: uberon
synonym: "epithelium of duodenum" EXACT [FMA:17231]
xref: FMA:17231
xref: SCTID:66036002
is_a: UBERON:0001902 ! epithelium of small intestine
relationship: part_of UBERON:0002114 ! duodenum
relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duodenum

[Term]
id: UBERON:0008420
name: buccal epithelium
namespace: uberon
xref: BTO:0004803
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0006956 {source="BTO"} ! buccal mucosa

[Term]
id: UBERON:0008428
name: ceratoglossus
namespace: uberon
def: "main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone." [http://www.medilexicon.com/medicaldictionary.php?t=56655]
synonym: "ceratoglossus muscle" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655]
synonym: "musculus ceratoglossus" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655]
xref: FMA:46720
relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus

[Term]
id: UBERON:0008523
name: infrahyoid muscle
namespace: uberon
def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoid" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoid muscle" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoidala" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "musculi infrahyoidei" RELATED LATIN [Wikipedia:Infrahyoid_muscles]
synonym: "strap muscle" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "strap muscles" RELATED [Wikipedia:Infrahyoid_muscles]
xref: FMA:13338
xref: SCTID:244829008
is_a: UBERON:0005493 ! hyoid muscle

[Term]
id: UBERON:0008571
name: suprahyoid muscle
namespace: uberon
def: "The term suprahyoid refers to the region above (superior to) the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [Wikipedia:Suprahyoid_muscles]
synonym: "musculi suprahyoidei" RELATED LATIN [Wikipedia:Suprahyoid_muscles]
synonym: "suprahyoid" RELATED [Wikipedia:Suprahyoid_muscles]
synonym: "suprahyoidala" RELATED [Wikipedia:Suprahyoid_muscles]
xref: FMA:46290
xref: SCTID:244824003
is_a: UBERON:0005493 ! hyoid muscle

[Term]
id: UBERON:0008582
name: superior longitudinal muscle of tongue
namespace: uberon
def: "The Longitudinalis linguC& superior (Superior lingualis) is a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis lingu%c3%a6 superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "musculus longitudinalis superior" EXACT [FMA:46693]
synonym: "musculus longitudinalis superior linguae" RELATED LATIN [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "superior longitudinal muscle" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
xref: FMA:46693
xref: SCTID:244790006
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0001723 {notes="edges of the tongue", source="dbpedia"} ! tongue

[Term]
id: UBERON:0008583
name: transverse muscle of tongue
namespace: uberon
def: "The Transversus linguC& (tansverse lingualis) is a muscle of the tongue. It consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue]
synonym: "musculus transversus linguae" RELATED LATIN [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transverse lingual muscle" EXACT [FMA:46695]
synonym: "transverse muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus lingu%c3%a6" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus linguae" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
xref: FMA:46695
xref: SCTID:244792003
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0001723 {source="dbpedia", notes="sides of the tongue"} ! tongue

[Term]
id: UBERON:0008584
name: vertical muscle of tongue
namespace: uberon
def: "The Verticalis linguC& (Vertical lingualis) is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue]
synonym: "musculus verticalis linguae" RELATED LATIN [Wikipedia:Vertical_muscle_of_tongue]
synonym: "vertical lingual muscle" EXACT [FMA:46696]
synonym: "vertical muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis lingu%c3%a6" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis lingu%c3%a6 muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
xref: FMA:46696
xref: SCTID:244793008
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0007373 {notes="Inferior surface borders of tongue", source="dbpedia"} ! inferior surface of tongue
relationship: has_muscle_origin UBERON:0009471 {source="dbpedia", notes="Submucosal fibrous layer of dorsum of tongue"} ! dorsum of tongue

[Term]
id: UBERON:0008712
name: stylohyoid
namespace: uberon
def: "The stylohyoid muscle is a slender muscle, lying anterior, and superior of the posterior belly of the digastric muscle. It shares this muscle's innervation by the facial nerve." [Wikipedia:Stylohyoid_muscle]
synonym: "musculus stylohyoideus" RELATED LATIN [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoid" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus muscle" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus muscles" RELATED [Wikipedia:Stylohyoid_muscle]
xref: FMA:9625
xref: SCTID:244826001
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle

[Term]
id: UBERON:0008791
name: rugal fold of stomach
namespace: uberon
synonym: "gastric ruga(e)" EXACT [FMA:15106]
synonym: "ruga of stomach" EXACT [FMA:15106]
xref: FMA:15106
relationship: part_of UBERON:0000945 ! stomach

[Term]
id: UBERON:0008799
name: transverse palatine fold
namespace: uberon
def: "a masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances." [http://www.drugs.com/dict/transverse-palatine-fold.html]
comment: note that this class refers to the singular and the FMA class refers to the set. In future this class may be split.
synonym: "palatine fold" EXACT [FMA:75652]
synonym: "palatine rugae" EXACT PLURAL [FMA:75652]
synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
synonym: "plicae palatinae transversae" EXACT [FMA:75652, FMA:TA]
synonym: "ruga of palate" EXACT [UBERON:cjm]
synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
synonym: "rugae of palate" EXACT PLURAL [UBERON:cjm]
synonym: "rugae palatinae" EXACT PLURAL [FMA:75652, FMA:TA]
synonym: "transverse palatine folds" EXACT PLURAL [FMA:75652]
synonym: "transverse palatine folds set" EXACT PLURAL [FMA:75652]
synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
xref: FMA:75652
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0008802
name: cheek pouch
namespace: uberon
def: "A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food." [BTO:0002224]
xref: BTO:0002224
xref: SCTID:31293007
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0008804
name: stylopharyngeus
namespace: uberon
def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle]
synonym: "M. stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle]
synonym: "musculus stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle]
synonym: "musculus stylopharyngeus" RELATED LATIN [Wikipedia:Stylopharyngeus_muscle]
synonym: "stylopharyngeus muscle" EXACT [Wikipedia:Stylopharyngeus_muscle]
xref: FMA:46664
xref: ncithesaurus:Stylopharyngeus
xref: SCTID:244806000
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle

[Term]
id: UBERON:0008806
name: buccal funnel
namespace: uberon
synonym: "suctorial disc" EXACT []
synonym: "suctorial disk" EXACT []
is_a: UBERON:0000166 ! oral opening

[Term]
id: UBERON:0008817
name: thymus primordium endoderm
namespace: uberon
relationship: part_of UBERON:0005562 ! thymus primordium

[Term]
id: UBERON:0008827
name: forestomach
namespace: uberon
xref: MA:0001606
xref: ncithesaurus:Forestomach
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 {source="MA"} ! stomach

[Term]
id: UBERON:0008835
name: hepatic diverticulum
namespace: uberon
def: "The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." [http://www.stembook.org/node/512, Wikipedia:Hepatic_diverticulum]
synonym: "diverticulum hepaticum" RELATED LATIN [Wikipedia:Hepatic_diverticulum]
synonym: "liver diverticulum" EXACT [XAO:0000101]
xref: AAO:0011057
xref: EHDAA2:0000740
xref: EHDAA:1530
xref: ncithesaurus:Hepatic_Diverticulum
xref: XAO:0000101
is_a: UBERON:0009497 ! epithelium of foregut-midgut junction
is_a: UBERON:0009854 ! digestive tract diverticulum
relationship: part_of UBERON:0006235 {source="EHDAA2"} ! foregut-midgut junction

[Term]
id: UBERON:0008854
name: root of molar tooth
namespace: uberon
def: "the part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165]
synonym: "molar root" EXACT [FMA:85302]
synonym: "molar tooth root" EXACT [FMA:85302]
xref: FMA:85302
is_a: UBERON:0003677 {source="FMA"} ! tooth root
intersection_of: UBERON:0003677 ! tooth root
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0003655 ! molar tooth

[Term]
id: UBERON:0008856
name: stomach muscularis externa
namespace: uberon
def: "the smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines" [MP:0010779]
comment: todo - logical def
synonym: "gastric muscularis" EXACT [FMA:14909]
synonym: "muscularis externa of stomach" EXACT [FMA:14909]
synonym: "tunica muscularis (gaster)" EXACT [FMA:14909]
xref: FMA:14909
xref: SCTID:362132003
is_a: UBERON:0004222 ! stomach smooth muscle
relationship: part_of UBERON:0001167 {source="FMA"} ! wall of stomach

[Term]
id: UBERON:0008857
name: stomach smooth muscle circular layer
namespace: uberon
def: "the middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum" [MP:0010780]
comment: todo - check
synonym: "circular layer of gastric muscularis" EXACT [FMA:14911]
synonym: "stratum circulare (tunica muscularis)(gaster)" EXACT [FMA:14911]
xref: FMA:14911
xref: MA:0001628
xref: SCTID:2746007
is_a: UBERON:0004222 ! stomach smooth muscle
relationship: part_of UBERON:0008856 ! stomach muscularis externa

[Term]
id: UBERON:0008858
name: pyloric canal
namespace: uberon
def: "the short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter" [MP:0010791, Wikipedia:Pyloric_canal]
synonym: "canalis pyloricus" EXACT [Wikipedia:Pyloric_canal]
synonym: "canalis pyloricus" RELATED LATIN [Wikipedia:Pyloric_canal]
xref: FMA:14580
xref: SCTID:245417002
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
relationship: continuous_with UBERON:0001165 ! pyloric antrum
relationship: continuous_with UBERON:0001202 ! pyloric sphincter
relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus

[Term]
id: UBERON:0008859
name: cardiac gastric gland
namespace: uberon
def: "the gastric glands in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it" [MP:0010795]
comment: Consistency note: Kardong places this in the glandular epithelium, FMA in the mucosa
subset: organ_slim
synonym: "gardiac gland" EXACT [ISBN10:0073040584]
synonym: "gastric gland of cardia" EXACT [FMA:14920]
synonym: "glandula cardiaca (gaster)" EXACT [FMA:14920]
xref: FMA:14920
xref: SCTID:8894005
is_a: UBERON:0000325 ! gastric gland
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0004996 {source="FMA"} ! mucosa of cardia of stomach

[Term]
id: UBERON:0008860
name: intermediate gastric gland
namespace: uberon
def: "any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach" [MP:0010796]
comment: check me
is_a: UBERON:0010038 ! fundic gastric gland
relationship: part_of UBERON:0001160 {source="MP"} ! fundus of stomach

[Term]
id: UBERON:0008861
name: pyloric gastric gland
namespace: uberon
def: "the gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [MP:0010797, Wikipedia:Pyloric_gland]
comment: Editors note: check relationship to pylorus vs antrum
synonym: "pyloric antrum gland" EXACT [OBOL:automatic]
synonym: "pyloric gland" EXACT [FMA:14922]
xref: FMA:14922
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png
xref: ncithesaurus:Pyloric_Gland
xref: SCTID:70710007
is_a: UBERON:0000325 ! gastric gland
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0004998 ! mucosa of pylorus

[Term]
id: UBERON:0008862
name: stomach smooth muscle inner oblique layer
namespace: uberon
def: "the innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food" [MP:0010804]
relationship: part_of UBERON:0008856 ! stomach muscularis externa

[Term]
id: UBERON:0008863
name: stomach smooth muscle outer longitudinal layer
namespace: uberon
def: "the most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum" [MP:0010805]
relationship: part_of UBERON:0008856 ! stomach muscularis externa

[Term]
id: UBERON:0008866
name: enamel knot
namespace: uberon
def: "a transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps" [MP:0010864]
relationship: part_of UBERON:0003843 ! dental epithelium
relationship: part_of UBERON:0005176 {source="MP"} ! tooth enamel organ

[Term]
id: UBERON:0008896
name: pharyngeal arch 3-7
namespace: uberon
synonym: "branchial arch" EXACT [ZFA:0001613]
synonym: "branchial arches" EXACT PLURAL [ZFA:0001613]
synonym: "branchial bar" EXACT [ZFA:0001613]
synonym: "branchial bars" EXACT PLURAL [ZFA:0001613]
synonym: "gill arch" EXACT [ZFA:0001613]
synonym: "gill arches 1-5" EXACT [ZFA:0001613]
synonym: "visceral arches 3-7" EXACT [ZFA:0001613]
xref: AAO:0010362
xref: SCTID:308766004
xref: TAO:0001597
xref: XAO:0000099
xref: ZFA:0001613
is_a: UBERON:0004185 ! endodermal gut
relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx

[Term]
id: UBERON:0008947
name: respiratory primordium
namespace: uberon
xref: EHDAA2:0004069
xref: ncithesaurus:Respiratory_Primordium
relationship: part_of UBERON:0003258 ! endoderm of foregut

[Term]
id: UBERON:0008969
name: dental follicle
namespace: uberon
def: "The structure within the developing alveolar bone of the jaws enclosing the tooth germ." [BTO:0000337]
synonym: "tooth follicle" RELATED [BTO:0000337]
xref: BTO:0000337
xref: SCTID:110975002
is_a: UBERON:0005087 {source="BTO"} ! tooth placode
relationship: part_of UBERON:0000165 {source="BTO"} ! mouth

[Term]
id: UBERON:0008971
name: left colon
namespace: uberon
def: "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." [BTO:0000646]
synonym: "distal colon" RELATED [BTO:0000646]
xref: BTO:0000646
xref: ncithesaurus:Left_Colon
xref: SCTID:362164005
relationship: develops_from UBERON:0001046 {source="BTO"} ! hindgut
relationship: part_of UBERON:0001155 {source="BTO"} ! colon

[Term]
id: UBERON:0008972
name: right colon
namespace: uberon
def: "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." [BTO:0000649]
synonym: "proximal colon" RELATED [BTO:0000649]
xref: BTO:0000649
xref: ncithesaurus:Right_Colon
xref: SCTID:362161002
relationship: develops_from UBERON:0001045 {source="BTO"} ! midgut
relationship: part_of UBERON:0001155 {source="BTO"} ! colon

[Term]
id: UBERON:0008978
name: anal sac
namespace: uberon
def: "In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands." [BTO:0001681]
xref: BTO:0001681
xref: SCTID:362169000
relationship: part_of UBERON:0001245 {source="BTO"} ! anus

[Term]
id: UBERON:0008989
name: esophageal gland
namespace: uberon
def: "One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed." [BTO:0003634, Wikipedia:Esophageal_glands]
synonym: "glandulae oesophageae" EXACT [Wikipedia:Esophageal_glands]
synonym: "mucous gland of submucosa of esophagus" EXACT [FMA:9404]
xref: BTO:0003634
xref: FMA:9404
xref: ncithesaurus:Esophageal_Gland
xref: SCTID:322749003
is_a: UBERON:0003294 ! gland of foregut
relationship: part_of UBERON:0001972 ! submucosa of esophagus

[Term]
id: UBERON:0008994
name: glandular stomach
namespace: uberon
def: "Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones." [BTO:0003791]
subset: organ_slim
synonym: "stomachus glandularis" RELATED [BTO:0003791]
xref: BTO:0003791
xref: ncithesaurus:Glandular_Stomach
xref: SCTID:27633001
is_a: UBERON:0000945 {source="BTO"} ! stomach

[Term]
id: UBERON:0009034
name: stomach region
namespace: uberon
xref: MA:0002561
xref: SCTID:245415005
relationship: part_of UBERON:0000945 ! stomach

[Term]
id: UBERON:0009099
name: typhlosole
namespace: uberon
def: "an invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development." [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/, Wikipedia:Typhlosole]
relationship: part_of UBERON:0001277 ! intestinal epithelium

[Term]
id: UBERON:0009116
name: thymoid
namespace: uberon
def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [PMID:21293377]
comment: Genes: FOXN1
subset: organ_slim
is_a: UBERON:0003295 ! pharyngeal gland
is_a: UBERON:0006925 ! digestive gland
relationship: part_of UBERON:0009119 ! branchial basket

[Term]
id: UBERON:0009119
name: branchial basket
namespace: uberon
def: "the network-like cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali" [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm]
subset: cyclostome_subset
synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm]
xref: http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0009130
name: dorsal meso-duodenum
namespace: uberon
xref: RETIRED_EHDAA2:0000411
xref: SCTID:361433003
relationship: part_of UBERON:0005712 {source="EHDAA2"} ! midgut duodenum mesentery

[Term]
id: UBERON:0009143
name: esophageal region
namespace: uberon
synonym: "oesophageal region" EXACT [RETIRED_EHDAA2:0000654]
xref: EMAPA:16700
xref: RETIRED_EHDAA2:0000654
relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut

[Term]
id: UBERON:0009145
name: pharyngeal region
namespace: uberon
xref: EMAPA:16549
xref: RETIRED_EHDAA2:0001454
relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut

[Term]
id: UBERON:0009195
name: anal membrane
namespace: uberon
comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html]
xref: EHDAA2:0004018
xref: ncithesaurus:Anal_Membrane
relationship: develops_from UBERON:0006217 {source="EHDAA2"} ! cloacal membrane
relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region

[Term]
id: UBERON:0009207
name: geschmacksstreifen
namespace: uberon
def: "Area between hard and soft palates rich in tastebuds." [UBERON:cjm]
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0009471
name: dorsum of tongue
namespace: uberon
def: "the superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html]
synonym: "dorsal tongue" EXACT [FMA:54651]
synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html]
synonym: "tongue dorsum" EXACT [FMA:54651]
xref: FMA:54651
xref: ncithesaurus:Dorsum_of_the_Tongue
xref: SCTID:66938003
relationship: part_of UBERON:0001723 {source="FMA"} ! tongue

[Term]
id: UBERON:0009478
name: associated mesenchyme of midgut
namespace: uberon
subset: emapa_ehdaa2
synonym: "early midgut associated mesenchyme" EXACT [EHDAA2:0001186]
xref: EHDAA2:0001186
xref: EMAPA:16256
relationship: part_of UBERON:0001045 ! midgut

[Term]
id: UBERON:0009479
name: ectoderm of buccopharyngeal membrane
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000190
xref: EMAPA:16260
relationship: part_of UBERON:0006211 ! buccopharyngeal membrane

[Term]
id: UBERON:0009480
name: endoderm of buccopharyngeal membrane
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000191
xref: EMAPA:16261
relationship: part_of UBERON:0006211 ! buccopharyngeal membrane

[Term]
id: UBERON:0009482
name: associated mesenchyme of foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000570
xref: EMAPA:16364
relationship: part_of UBERON:0006235 ! foregut-midgut junction

[Term]
id: UBERON:0009483
name: mesentery of foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000575
xref: EMAPA:16365
relationship: part_of UBERON:0006235 ! foregut-midgut junction

[Term]
id: UBERON:0009484
name: dorsal mesentery of mesentery of foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000571
xref: EMAPA:16366
is_a: UBERON:0009483 ! mesentery of foregut-midgut junction

[Term]
id: UBERON:0009497
name: epithelium of foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000573
xref: EMAPA:16564
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0006235 ! foregut-midgut junction

[Term]
id: UBERON:0009502
name: ventral mesentery of mesentery of foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EMAPA:16714
xref: RETIRED_EHDAA2:0000576
is_a: UBERON:0009483 ! mesentery of foregut-midgut junction

[Term]
id: UBERON:0009503
name: associated mesenchyme of hindgut
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000780
xref: EMAPA:16716
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0009521
name: anal membrane endodermal component
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0004020
xref: EMAPA:17177
is_a: UBERON:0003260 ! endoderm of hindgut
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0009522
name: lateral lingual swelling epithelium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000913
xref: EMAPA:17190
is_a: UBERON:0003351 ! pharyngeal epithelium
relationship: part_of UBERON:0006757 ! lateral lingual swelling

[Term]
id: UBERON:0009526
name: maxillary process mesenchyme
namespace: uberon
subset: emapa_ehdaa2
synonym: "mesenchyme of maxillary process" EXACT [EMAPA:17361]
synonym: "mesenchyme of maxillary prominence" EXACT [UBERON:cjm]
xref: EHDAA2:0001071
xref: EMAPA:17361
relationship: part_of UBERON:0005868 ! maxillary prominence

[Term]
id: UBERON:0009538
name: mesenchyme of sublingual gland primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001937
xref: EMAPA:17754
relationship: part_of UBERON:0006297 ! sublingual gland primordium

[Term]
id: UBERON:0009539
name: mesenchyme of submandibular gland primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001941
xref: EMAPA:17757
relationship: part_of UBERON:0006298 ! submandibular gland primordium

[Term]
id: UBERON:0009548
name: hepatic sinusoid of left of lobe of liver
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001001
xref: EMAPA:18309
is_a: UBERON:0001281 ! hepatic sinusoid
intersection_of: UBERON:0001281 ! hepatic sinusoid
intersection_of: part_of UBERON:0001115 ! left lobe of liver
relationship: part_of UBERON:0001115 ! left lobe of liver

[Term]
id: UBERON:0009549
name: hepatic sinusoid of right of lobe of liver
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001009
xref: EMAPA:18316
is_a: UBERON:0001281 ! hepatic sinusoid
intersection_of: UBERON:0001281 ! hepatic sinusoid
intersection_of: part_of UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0001114 ! right lobe of liver

[Term]
id: UBERON:0009550
name: endoderm of foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000572
xref: EMAPA:18403
relationship: part_of UBERON:0006235 ! foregut-midgut junction

[Term]
id: UBERON:0009566
name: intestinal submucosa
namespace: uberon
synonym: "submucosa of intestine" EXACT [FMA:15696]
xref: FMA:15696
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine

[Term]
id: UBERON:0009671
name: nasal fin
namespace: uberon
def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308]
xref: EHDAA2:0004548
is_a: UBERON:0004906 ! ectodermal gut
relationship: part_of UBERON:0002424 {source="EHDAA2"} ! oral epithelium

[Term]
id: UBERON:0009672
name: oronasal membrane
namespace: uberon
def: "The oronasal membrane separates the oral cavity and nasal cavity. In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html]
comment: split into two?
synonym: "bucconasal membrane" EXACT [EHDAA:7840]
xref: EHDAA2:0000188
xref: EHDAA:7840
xref: EHDAA:7984
is_a: UBERON:0004906 ! ectodermal gut
relationship: develops_from UBERON:0009671 {source="EHDAA2"} ! nasal fin
relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening

[Term]
id: UBERON:0009678
name: tooth row
namespace: uberon
def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator]
synonym: "row of teeth" EXACT [UBERON:cjm]
synonym: "tooth rows" EXACT PLURAL [ZFA:0001642]
xref: TAO:0001667
xref: ZFA:0001642
is_a: UBERON:0003672 ! dentition

[Term]
id: UBERON:0009679
name: set of lower jaw teeth
namespace: uberon
synonym: "lower jaw teeth" EXACT [EHDAA2:0001029]
xref: EHDAA2:0001029
is_a: UBERON:0009678 ! tooth row

[Term]
id: UBERON:0009680
name: set of upper jaw teeth
namespace: uberon
synonym: "upper jaw teeth" EXACT [EHDAA2:0002129]
xref: EHDAA2:0002129
is_a: UBERON:0009678 ! tooth row

[Term]
id: UBERON:0009695
name: epithelium of laryngopharynx
namespace: uberon
synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454]
synonym: "laryngopharynx epithelium" EXACT [FMA:62454]
xref: EHDAA2:0004575
xref: FMA:62454
is_a: UBERON:0003351 ! pharyngeal epithelium
relationship: develops_from UBERON:0007690 {source="EHDAA2"} ! early pharyngeal endoderm
relationship: part_of UBERON:0001051 {source="EHDAA2"} ! hypopharynx
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium

[Term]
id: UBERON:0009697
name: epithelium of appendix
namespace: uberon
synonym: "appendix epithelium" EXACT [FMA:63581]
synonym: "epithelium of vermiform appendix" EXACT [FMA:63581]
xref: EHDAA2:0004561
xref: FMA:63581
is_a: UBERON:0005636 ! caecum epithelium
is_a: UBERON:0009854 ! digestive tract diverticulum
relationship: develops_from UBERON:0005636 {source="EHDAA2"} ! caecum epithelium
relationship: part_of UBERON:0001154 {source="EHDAA2"} ! appendix
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
relationship: part_of UBERON:0004989 {source="FMA"} ! mucosa of appendix

[Term]
id: UBERON:0009722
name: entire pharyngeal arch endoderm
namespace: uberon
synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621]
xref: EHDAA2:0004621
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium

[Term]
id: UBERON:0009750
name: spleen mesenchyme
namespace: uberon
def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen" [MP:0011263]
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0009845
name: urogenital sinus mesenchyme
namespace: uberon
comment: Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth
synonym: "UGM" EXACT [PMID:18977204]
xref: EHDAA2:0004061
is_a: UBERON:0009503 ! associated mesenchyme of hindgut
relationship: part_of UBERON:0000164 ! primitive urogenital sinus

[Term]
id: UBERON:0009846
name: embryonic cloacal epithelium
namespace: uberon
synonym: "cloacal epithelium" EXACT [EHDAA2:0004585]
xref: EHDAA2:0004585
is_a: UBERON:0003353 ! epithelium of hindgut
relationship: develops_from UBERON:0003353 {source="EHDAA2"} ! epithelium of hindgut
relationship: part_of UBERON:0000163 ! embryonic cloaca
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium

[Term]
id: UBERON:0009847
name: prostate field
namespace: uberon
def: "a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, PMID:18977204]
synonym: "prostate primordium" EXACT []
is_a: UBERON:0004902 ! urogenital sinus epithelium
relationship: induced_by UBERON:0009845 {source="PMID:18977204"} ! urogenital sinus mesenchyme
relationship: part_of UBERON:0004902 {source="PMID:18977204"} ! urogenital sinus epithelium

[Term]
id: UBERON:0009854
name: digestive tract diverticulum
namespace: uberon
def: "Branch or outpocketing of the digestive tract." [UBERON:cjm]
synonym: "diverticulum of gut" RELATED [FBbt:00100316]
synonym: "intestinal pouch" RELATED []
xref: FBbt:00100316
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0009855
name: echinoderm gastric caecum
namespace: uberon
def: "non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer." [PMID:20955602]
comment: The digestive tract of many metazoan invertebrates is characterized by the presence of caeca or diverticula that serve secretory and/or absorptive functions. With the development of various feeding habits, distinctive digestive organs may be present in certain taxa. This also holds true for sea urchins (Echinodermata: Echinoidea), in which a highly specialized gastric caecum can be found in members of a derived subgroup, the Irregularia (cake urchins, sea biscuits, sand dollars, heart urchins, and related forms)... Homologous with the more or less pronounced dilation of the anterior stomach that is observed in most "regular" sea urchin taxa[PMID:20955602]
is_a: UBERON:0009854 ! digestive tract diverticulum

[Term]
id: UBERON:0009860
name: ascidian digestive gland
namespace: uberon
xref: ANISEED:1239655
is_a: UBERON:0006925 ! digestive gland

[Term]
id: UBERON:0009870
name: zone of stomach
namespace: uberon
def: "A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland." [ISBN10:0073040584, Wikipedia:Stomach#Sections]
comment: Editor notes: We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach
synonym: "gastric zone" EXACT [FMA:14558]
synonym: "region of stomach" EXACT []
synonym: "section of stomach" EXACT []
xref: FMA:14558
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Regions_of_stomach.svg/500px-Regions_of_stomach.svg.png
xref: SCTID:245415005
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 {source="Obol"} ! stomach

[Term]
id: UBERON:0009882
name: anal column
namespace: uberon
def: "One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal. They are named after Giovanni Battista Morgagni who also has several other eponyms named after himself[WP]" [Wikipedia:Anal_columns]
synonym: "column of Morgagni" EXACT [FMA:15713]
synonym: "columnae anales" RELATED LATIN [Wikipedia:Anal_columns]
xref: FMA:15713
xref: ncithesaurus:Anal_Column
xref: SCTID:245444007
relationship: part_of UBERON:0000159 ! anal canal

[Term]
id: UBERON:0009959
name: lumen of oropharynx
namespace: uberon
synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556]
synonym: "oropharynx lumen" EXACT [FMA:55095]
xref: EHDAA2:0004556
xref: FMA:55095
relationship: develops_from UBERON:0006272 {source="EHDAA2"} ! oronasal cavity
relationship: part_of UBERON:0001731 ! cavity of pharynx
relationship: surrounded_by UBERON:0001729 {source="FMA"} ! oropharynx

[Term]
id: UBERON:0009960
name: esophagus smooth muscle circular layer
namespace: uberon
synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574]
xref: FMA:67605
xref: MA:0001574
relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus
relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle

[Term]
id: UBERON:0009961
name: esophagus smooth muscle longitudinal layer
namespace: uberon
synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575]
synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573]
xref: FMA:63573
xref: MA:0001575
relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus
relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle

[Term]
id: UBERON:0009967
name: spleen venous sinus
namespace: uberon
comment: See comments for UBERON:0003910
synonym: "sinus lienalis" EXACT [FMA:TA]
synonym: "sinus splenicus" EXACT [FMA:TA]
synonym: "splenic sinus" EXACT [FMA:62815]
synonym: "venous sinus of red pulp of spleen" EXACT [FMA:62815]
xref: FMA:62815
xref: MA:0000761
xref: ncithesaurus:Splenic_Sinus
relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen

[Term]
id: UBERON:0009970
name: epithelium of pancreatic duct
namespace: uberon
comment: Editor note: in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them subclasses this
synonym: "pancreatic duct epithelium" EXACT [FMA:67681]
synonym: "pancreatic ductal epithelium" EXACT [FMA:67681]
xref: FMA:67681
relationship: part_of UBERON:0007329 ! pancreatic duct

[Term]
id: UBERON:0009971
name: principal gastric gland
namespace: uberon
def: "one of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]." [http://www.drugs.com/dict/acid-gland.html, MP:0003892]
comment: AO notes: FMA has this as part of both the fundus and the body, but these are largely spatially disjoint.
synonym: "acid gland" EXACT [http://www.drugs.com/dict/acid-gland.html]
synonym: "gastric follicle" RELATED [MP:0003892]
synonym: "gastric gland" BROAD [MP:0003892]
synonym: "glandula gastrica propria" EXACT [FMA:14921]
synonym: "main gastric gland" EXACT [FMA:14921]
synonym: "oxyntic gland" EXACT [FMA:14921]
synonym: "Wassman gland" RELATED [MP:0003892]
xref: FMA:14921
xref: FMA:14923
is_a: UBERON:0000325 {source="FMA"} ! gastric gland

[Term]
id: UBERON:0009977
name: natal tooth
namespace: uberon
def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)" [MESH:A.14.254.860.700.500]
synonym: "natal teeth" EXACT PLURAL [GAID:1267]
synonym: "natal tooth" RELATED [GAID:1267]
xref: GAID:1267
xref: MESH:A.14.254.860.700.500
is_a: UBERON:0007115 {source="GAID"} ! deciduous tooth

[Term]
id: UBERON:0010016
name: spiral valve of intestine
namespace: uberon
property_value: RO:0002161 NCBITaxon:32523
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0010032
name: anterior part of tongue
namespace: uberon
def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [Wikipedia:Anterior_tongue]
comment: AO notes: check NCIT. Development notes: The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue
synonym: "anterior 2/3 of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "anterior 2/3 of tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "anterior two thirds of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "apex linguae" RELATED [Wikipedia:Anterior_tongue]
synonym: "apex of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "buccal part of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "front of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "oral part of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "pars anterior dorsi linguae" RELATED LATIN [Wikipedia:Anterior_tongue]
xref: FMA:229084
xref: ncithesaurus:Apex_of_the_Tongue
relationship: develops_from UBERON:0006260 ! lingual swellings
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0010033
name: posterior part of tongue
namespace: uberon
def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)" [Wikipedia:Posterior_tongue]
synonym: "base of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645]
synonym: "pars posterior dorsi linguae" RELATED LATIN [Wikipedia:Posterior_tongue]
synonym: "pars posterior linguae" EXACT [FMA:TA]
synonym: "pars postsulcalis (dorsum linguae)" EXACT [FMA:54645]
synonym: "pharyngeal part of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "pharyngeal part of tongue" EXACT [FMA:54645]
synonym: "pharyngeal portion of dorsum of tongue" EXACT [FMA:54645]
synonym: "posterior 1/3 of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "posterior part of dorsum of tongue" EXACT [FMA:54645]
synonym: "posterior third of tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "postsulcal part of dorsum of tongue" EXACT [FMA:54645]
synonym: "radix linguae" RELATED [Wikipedia:Posterior_tongue]
xref: FMA:54645
xref: ncithesaurus:Base_of_the_Tongue
relationship: part_of UBERON:0009471 {source="FMA"} ! dorsum of tongue

[Term]
id: UBERON:0010034
name: copula linguae
namespace: uberon
def: "A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue  //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]." [Wikipedia:Copula_linguae]
comment: add new term for Hypobranchial_eminence?
synonym: "copula" EXACT [EHDAA2:0004611]
synonym: "copula linguae" RELATED LATIN [Wikipedia:Copula_linguae]
xref: EHDAA2:0004611
xref: SCTID:361424000
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue

[Term]
id: UBERON:0010038
name: fundic gastric gland
namespace: uberon
def: "The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct." [Wikipedia:Fundic_glands]
comment: Editor notes: Consider FMA:14923
synonym: "fundal gland" EXACT []
synonym: "fundus gland" EXACT []
synonym: "gastric fundal gland" EXACT []
synonym: "gastric fundus gland" EXACT []
synonym: "gastric gland of fundus of stomach" EXACT []
synonym: "glandulae gastricae" RELATED LATIN [Wikipedia:Fundic_glands]
xref: ncithesaurus:Fundic_Gland
xref: SCTID:268338004
is_a: UBERON:0000325 ! gastric gland
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001160 ! fundus of stomach
relationship: part_of UBERON:0001160 ! fundus of stomach
relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach

[Term]
id: UBERON:0010039
name: food storage organ
namespace: uberon
def: "An organ of the digestive tract that is capable of retaining and storing food" [UBERON:cjm]
comment: This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates
subset: functional_classification
subset: grouping_class
xref: TADS:0000172
xref: TGMA:0001041
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0010040
name: stomach non-glandular epithelium
namespace: uberon
def: "Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands." [ISBN10:0073040584]
comment: Editor notes: OWL definition to be added later. Taxon notes: this region may develop from the base of the esophagus (some herbivores) - in rodents, loss of the gastric glands in the mucosa leavea a nonglandular epithelial stomach in which smooth muscle contractions knead and mix digesta. This can be keratinized.
synonym: "stomach aglandular epithelium" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Mammalian_Stomachs_remake.png/650px-Mammalian_Stomachs_remake.png
is_a: UBERON:0001276 ! epithelium of stomach

[Term]
id: UBERON:0010047
name: oral gland
namespace: uberon
def: "Gland of the epithelium lining the oral cavity. The most common are the salivary glands." [ISBN10:0073040584]
comment: Note that Kardong classifies lacrimal glands here
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0010048
name: Duvernoy's gland
namespace: uberon
def: "A gland situated on the upper lip found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland]
property_value: "homologous_to" UBERON:0008976
is_a: UBERON:0010047 ! oral gland

[Term]
id: UBERON:0010049
name: supralabial gland
namespace: uberon
def: "Glandular tissue present in lips of reptiles." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland]
is_a: UBERON:0010047 ! oral gland

[Term]
id: UBERON:0010050
name: infralabial gland
namespace: uberon
def: "Glandular tissue present in lips of reptiles." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland]
is_a: UBERON:0010047 ! oral gland

[Term]
id: UBERON:0010052
name: mucosa of dorsum of tongue
namespace: uberon
comment: Editor notes: check surface terms. Development notes: develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN10:1607950324
synonym: "mucosa of dorsal surface of tongue" EXACT []
xref: FMA:74871
xref: SCTID:245835003
is_a: UBERON:0005020 ! mucosa of tongue
relationship: part_of UBERON:0009471 ! dorsum of tongue

[Term]
id: UBERON:0010056
name: future tongue
namespace: uberon
xref: EHDAA2:0000696
xref: EHDAA:2951
relationship: develops_into UBERON:0001723 ! tongue
relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening
relationship: part_of UBERON:0001042 {source="EHDAA"} ! chordate pharynx

[Term]
id: UBERON:0010057
name: hypopharyngeal eminence
namespace: uberon
synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic]
xref: EHDAA2:0000799
xref: EMAPA:17352
xref: SCTID:361420009
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue

[Term]
id: UBERON:0010059
name: hypoglossal cord
namespace: uberon
xref: EHDAA2:0004610
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue

[Term]
id: UBERON:0010061
name: lumen of nasopharynx
namespace: uberon
synonym: "nasopharyngeal luman" EXACT []
synonym: "nasopharynx cavity" EXACT []
synonym: "nasopharynx lumen" EXACT [FMA:55094]
xref: FMA:55094
relationship: part_of UBERON:0001731 ! cavity of pharynx
relationship: surrounded_by UBERON:0001728 {source="FMA"} ! nasopharynx

[Term]
id: UBERON:0010081
name: future common hepatic duct
namespace: uberon
xref: EHDAA2:0000595
is_a: UBERON:0003703 ! extrahepatic bile duct
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: develops_into UBERON:0001175 ! common hepatic duct
relationship: develops_from UBERON:0005604 ! hepatic duct extrahepatic part
relationship: develops_into UBERON:0001175 ! common hepatic duct

[Term]
id: UBERON:0010153
name: rumen papilla
namespace: uberon
synonym: "rumen papillae" EXACT PLURAL []
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0008285 ! rumen epithelium

[Term]
id: UBERON:0010154
name: inner lining mucosa of the abomasum
namespace: uberon
def: "the inner mucosa of the fourth stomach chamber of a ruminant produces rennet." [Wikipedia:Rennet]
synonym: "rennet" RELATED [BTO:0001168]
xref: BTO:0001168
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0007358 {source="BTO"} ! abomasum

[Term]
id: UBERON:0010174
name: Schweigger-Seidel sheath
namespace: uberon
def: "a phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen" [PMC:PMC3204613, Wikipedia:Schweigger-Seidel_sheath]
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0010183
name: liver trabecula
namespace: uberon
def: "A trabecula that is part of a liver" [GO:0060344, Obol:automatic]
synonym: "hepatic trabecula" RELATED []
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0010234
name: palatopharyngeus
namespace: uberon
def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [Wikipedia:Palatopharyngeus_muscle]
comment: Structure notes: It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae
synonym: "musculus palatopharyngeus" RELATED LATIN [Wikipedia:Palatopharyngeus_muscle]
synonym: "palatopharyngeal muscle" EXACT []
synonym: "palatopharyngeus muscle" EXACT []
synonym: "pharyngopalatinus" RELATED [Wikipedia:Palatopharyngeus_muscle]
synonym: "pharyngopalatinus muscle" EXACT [Wikipedia:Palatopharyngeus_muscle]
xref: FMA:46666
xref: SCTID:244796000
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle
relationship: has_muscle_origin UBERON:0003216 {source="dbpedia", notes="palatine aponeurosis and hard palate"} ! hard palate

[Term]
id: UBERON:0010238
name: torus pylorus
namespace: uberon
def: "A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal" [http://medical-dictionary.thefreedictionary.com/torus+pyloricus]
synonym: "torus pyloricus" EXACT []
property_value: RO:0002161 NCBITaxon:314146
is_a: UBERON:0009034 {source="MA"} ! stomach region
relationship: part_of UBERON:0001166 ! pylorus

[Term]
id: UBERON:0010239
name: spiral colon
namespace: uberon
def: "A variant of the ascending colon ruminants and pigs." [Wikipedia:Spiral_colon]
synonym: "coiled colon" EXACT []
xref: ncithesaurus:Spiral_Colon
property_value: "homologous_to" UBERON:0001156
is_a: UBERON:0000168 ! segment of colon
relationship: continuous_with UBERON:0001157 ! transverse colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut

[Term]
id: UBERON:0010240
name: zygomatic gland
namespace: uberon
def: "a salivary gland best developed in carnivores; located above the zygomatic arch and below the eye. Enlargement or mucocele of the gland causes exophthalmos" [http://medical-dictionary.thefreedictionary.com/zygomatic+gland]
synonym: "orbital gland" RELATED []
synonym: "superior buccal gland" RELATED []
synonym: "upper molar gland" RELATED []
xref: ncithesaurus:Zygomatic_Gland
is_a: UBERON:0001044 ! salivary gland

[Term]
id: UBERON:0010241
name: molar gland
namespace: uberon
def: "A modified ventral buccal gland well developed in cats and between orbicularis oris muscle and mucuous membrane of lower lip." [http://medical-dictionary.thefreedictionary.com/zygomatic+gland]
synonym: "orbital gland" RELATED []
synonym: "upper molar gland" RELATED []
xref: ncithesaurus:Zygomatic_Gland
is_a: UBERON:0001044 ! salivary gland

[Term]
id: UBERON:0010242
name: anterior buccal gland
namespace: uberon
xref: MA:0002700
is_a: UBERON:0001830 {source="MA"} ! minor salivary gland

[Term]
id: UBERON:0010264
name: hepatopancreas
namespace: uberon
def: "an organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food." [Wikipedia:Hepatopancreas]
xref: BTO:0000597
property_value: "present_in_taxon" NCBITaxon:6657
is_a: UBERON:0003408 ! gland of gut
is_a: UBERON:0006925 {source="BTO"} ! digestive gland
relationship: part_of UBERON:0001045 {source="BTO"} ! midgut

[Term]
id: UBERON:0010265
name: mollusc hepatopancreas
namespace: uberon
def: "." [Wikipedia:Digestive_system_of_gastropods#Hepatopancreas]
is_a: UBERON:0010264 ! hepatopancreas

[Term]
id: UBERON:0010266
name: arthropod hepatopancreas
namespace: uberon
def: "Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage." [BTO:0000597]
synonym: "crustacean digestive gland" RELATED []
synonym: "midgut gland" RELATED [BTO:0000597]
is_a: UBERON:0010264 ! hepatopancreas

[Term]
id: UBERON:0010334
name: maxillary process mesenchyme from neural crest
namespace: uberon
xref: EHDAA2:0004601
is_a: UBERON:0009526 ! maxillary process mesenchyme
relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme

[Term]
id: UBERON:0010335
name: maxillary process mesenchyme from head mesenchyme
namespace: uberon
xref: EHDAA2:0004602
is_a: UBERON:0009526 ! maxillary process mesenchyme
relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme

[Term]
id: UBERON:0010336
name: mandibular process mesenchyme from neural crest
namespace: uberon
xref: EHDAA2:0004603
is_a: UBERON:0006905 ! mandibular process mesenchyme
relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme

[Term]
id: UBERON:0010337
name: mandibular process mesenchyme from head mesenchyme
namespace: uberon
xref: EHDAA2:0004604
is_a: UBERON:0006905 ! mandibular process mesenchyme
relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme

[Term]
id: UBERON:0010384
name: lumen of laryngopharynx
namespace: uberon
synonym: "laryngopharynx lumen" EXACT [FMA:55096]
xref: FMA:55096
relationship: part_of UBERON:0001731 ! cavity of pharynx
relationship: surrounded_by UBERON:0001051 ! hypopharynx

[Term]
id: UBERON:0010386
name: peyer's patch follicle
namespace: uberon
xref: MA:0000732
relationship: part_of UBERON:0001211 ! Peyer's patch

[Term]
id: UBERON:0010387
name: Peyer's patch T cell area
namespace: uberon
def: "the Peyer's patch area normally occupied by T lymphocytes" [MP:0002392]
relationship: part_of UBERON:0001211 ! Peyer's patch

[Term]
id: UBERON:0010398
name: spleen marginal sinus
namespace: uberon
def: "the border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath (PALS) that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood" [MP:MP]
comment: Note that there is no consensus in the literature about which compartments constitute the white pulp or the ramifications of the microvasculature. In addition, notable differences exist between humans and rodents. In this ontology, the marginal sinus (which may not exist in human) has been included as part of the white pulp. The perifollicular zone, which is present in human and not rodents, may be the functional equivalent of the marginal sinus in rodents.[MP:0002363]
synonym: "splenic marginal sinus" EXACT [MP:0002363]
xref: MA:0000754
xref: ncithesaurus:Splenic_Marginal_Sinus
is_a: UBERON:0001959 ! white pulp of spleen

[Term]
id: UBERON:0010399
name: spleen trabecular artery
namespace: uberon
def: "one of the branches of the splenic artery" [MP:0002354]
xref: MA:0000759
xref: ncithesaurus:Splenic_Trabecular_Artery
relationship: part_of UBERON:0001265 ! trabecula of spleen

[Term]
id: UBERON:0010400
name: spleen trabecular vein
namespace: uberon
def: "one of the veins that feed the splenic vein" [MP:0002228]
xref: MA:0000760
xref: ncithesaurus:Splenic_Trabecular_Vein
relationship: part_of UBERON:0001265 ! trabecula of spleen

[Term]
id: UBERON:0010401
name: spleen central arteriole
namespace: uberon
def: "A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein" [MP:MP]
synonym: "follicular arteriole" EXACT [MP:0002361]
synonym: "splenic central arteriole" EXACT [MP:0002361]
xref: MA:0000763
xref: SCTID:282511007
relationship: part_of UBERON:0001959 ! white pulp of spleen

[Term]
id: UBERON:0010421
name: spleen B cell corona
namespace: uberon
alt_id: UBERON:FMA_15843-MA_0002672
def: "the area of the (spleen) secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes" [CL:tm, https://github.com/cmungall/uberon/issues/6, PMID:17495967]
synonym: "B cell domain of the spleen" BROAD [MP:0002360]
synonym: "B lymphocyte domain of the spleen" BROAD []
synonym: "follicle mantle" EXACT [MP:0002360]
synonym: "lymphocytic corona" BROAD [CL:tm, MP:0002360]
synonym: "spleen B cell corona" EXACT [MP:0002360]
synonym: "spleen B-cell corona" EXACT [MP:0002360]
synonym: "spleen lymphocytic corona" EXACT [CL:tm, MP:0002360]
synonym: "spleen mantle zone" RELATED [CL:tm, MP:0002360]
synonym: "splenic B cell corona" EXACT [MP:0002360]
synonym: "splenic corona" BROAD [CL:tm]
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle
relationship: surrounds UBERON:0005196 ! spleen germinal center

[Term]
id: UBERON:0010423
name: primary lymphoid nodule of tonsil
namespace: uberon
synonym: "lymphoid nodule of tonsil" RELATED [FMA:86018]
xref: FMA:86018
relationship: part_of UBERON:0002372 ! tonsil

[Term]
id: UBERON:0010426
name: oropharyngeal choana
namespace: uberon
def: "opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [UBERON:cjm]
comment: Taxon notes: Aves. Function notes: has function in pressure equalization in birds that fly to high altitudes
synonym: "apertura nasalis interna" RELATED [AAO:0000025]
synonym: "cleft palate" RELATED []
synonym: "oropharyngeal naris" EXACT []
synonym: "palatal choana" EXACT []
synonym: "palatal cleft" RELATED []
xref: AAO:0000025
relationship: adjacent_to UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0010704
name: parenchyma of quadrate lobe of liver
namespace: uberon
synonym: "liver right quadrate lobe parenchyma" EXACT [EHDAA2:0001014]
synonym: "parenchyma of quadrate lobe" EXACT [EMAPA:18320]
xref: EHDAA2:0001014
xref: EMAPA:18320
xref: FMA:71676
is_a: UBERON:0005221 ! liver right lobe parenchyma
intersection_of: UBERON:0001280 ! liver parenchyma
intersection_of: part_of UBERON:0001116 ! quadrate lobe of liver
relationship: part_of UBERON:0001116 ! quadrate lobe of liver

[Term]
id: UBERON:0010706
name: parenchyma of caudate lobe of liver
namespace: uberon
synonym: "liver right caudate lobe parenchyma" EXACT [EHDAA2:0001007]
synonym: "parenchyma of caudate lobe" EXACT [EMAPA:18315]
xref: EHDAA2:0001007
xref: EMAPA:18315
xref: FMA:71659
is_a: UBERON:0005221 ! liver right lobe parenchyma
is_a: UBERON:0005222 ! liver left lobe parenchyma
intersection_of: UBERON:0001280 ! liver parenchyma
intersection_of: part_of UBERON:0001117 ! caudate lobe of liver
relationship: part_of UBERON:0001117 ! caudate lobe of liver

[Term]
id: UBERON:0010749
name: middle pharyngeal constrictor
namespace: uberon
def: "The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle." [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictor medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictor pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictores pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "hyopharyngeus" RELATED []
synonym: "middle constrictor" EXACT [FMA:46622]
synonym: "middle constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "middle constrictor muscle" RELATED []
synonym: "middle constrictor of pharynx" EXACT [FMA:46622]
synonym: "middle constrictor pharyngeus" EXACT [FMA:46622]
synonym: "middle pharyngeal constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "musculus constrictor pharyngis medius" EXACT [FMA:TA]
synonym: "musculus constrictor pharyngis medius" RELATED LATIN [Wikipedia:Middle_pharyngeal_constrictor_muscle]
xref: FMA:46622
xref: ncithesaurus:Middle_Constrictor_Muscle
xref: SCTID:244802003
is_a: UBERON:0001569 {source="FMA"} ! constrictor muscle of pharynx

[Term]
id: UBERON:0010756
name: spleen follicular dendritic cell network
namespace: uberon
def: "the enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response" [MP:0008473]
comment: The follicular dendritic cell network is often visualized by using the monoclonal antibody FDC-M2.
synonym: "FDC network" BROAD [MP:0008473]
synonym: "FDCN" BROAD [MP:0008473]
synonym: "spleen FDC network" EXACT [MP:0008473]
synonym: "splenic follicular dendritic cell network" EXACT [MP:0008473]
relationship: part_of UBERON:0004042 ! spleen secondary B follicle

[Term]
id: UBERON:0010879
name: tusk
namespace: uberon
def: "Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal's sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical openings of the roots of the teeth" [Wikipedia:Tusk]
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0010928
name: cricopharyngeus
namespace: uberon
comment: muscle belly
synonym: "cricopharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46661]
synonym: "cricopharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46661]
synonym: "cricopharyngeal part of inferior pharyngeal constrictor muscle" EXACT []
synonym: "cricopharyngeus muscle" RELATED []
synonym: "pars cricopharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46661]
synonym: "pars cricopharyngea musculus constrictoris pharyngis inferioris" EXACT [FMA:TA]
xref: FMA:46661
xref: SCTID:244804002
is_a: UBERON:0000933 ! pharyngeal muscle
relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor

[Term]
id: UBERON:0010930
name: interhyoideus
namespace: uberon
comment: Usage notes: may be obsoleted. Muscle between hyoid arches in fish; Taxon notes: the [mammalian] interhyoideus is homologous with the simple interhyoideus of early stages of amphibia[Edgeworth, 1935].  most extant actinopterygians part of the interhyoideus separates into a distinct muscle during development, the hyohyoideus - http://www.biomedcentral.com/1471-213X/8/24/
synonym: "interhyoideus muscle" EXACT []
xref: AAO:0010649
is_a: UBERON:0005493 ! hyoid muscle

[Term]
id: UBERON:0010936
name: thyropharyngeus
namespace: uberon
comment: muscle belly
synonym: "pars thyropharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46658]
synonym: "pars thyropharyngea musculus constrictoris pharyngis inferioris" EXACT [FMA:TA]
synonym: "thyropharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46658]
synonym: "thyropharyngeal part of inferior constrictor pharyngeus muscle" EXACT []
synonym: "thyropharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46658]
xref: FMA:46658
xref: SCTID:244805001
is_a: UBERON:0000933 ! pharyngeal muscle
relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor

[Term]
id: UBERON:0010937
name: salpingopharyngeus muscle
namespace: uberon
def: "The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus." [Wikipedia:Salpingopharyngeus_muscle]
synonym: "musculus salpingopharyngeus" RELATED LATIN [Wikipedia:Salpingopharyngeus_muscle]
synonym: "salpingopharyngeus" RELATED [Wikipedia:Salpingopharyngeus_muscle]
xref: FMA:46665
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle
relationship: has_muscle_insertion UBERON:0010234 {source="dbpedia", notes="fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers"} ! palatopharyngeus

[Term]
id: UBERON:0010940
name: belly of digastric
namespace: uberon
synonym: "digastric belly" EXACT [FMA:46297]
xref: FMA:46297
xref: SCTID:360772008
relationship: part_of UBERON:0001562 ! digastric

[Term]
id: UBERON:0010943
name: anterior belly of digastric
namespace: uberon
synonym: "anterior belly of digastric muscle" EXACT []
synonym: "digastricus anterior" EXACT []
synonym: "digastricus, venter rostralis" EXACT []
synonym: "venter anterior (musculus digastricus)" EXACT [FMA:46302]
xref: FMA:46302
xref: SCTID:141804004
is_a: UBERON:0010940 ! belly of digastric

[Term]
id: UBERON:0010944
name: posterior belly of digastric
namespace: uberon
synonym: "digastricus posterior" EXACT []
synonym: "digastricus, venter caudalis" EXACT []
synonym: "posterior belly of digastric muscle" EXACT []
xref: FMA:46303
xref: SCTID:141905002
is_a: UBERON:0010940 ! belly of digastric

[Term]
id: UBERON:0010948
name: cleidooccipital muscle
namespace: uberon
comment: Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33%
synonym: "cleido-occipitalis" EXACT []
synonym: "cleido-occipitalis muscle" EXACT []
xref: MA:0002276
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0010954
name: ceratohyoideus
namespace: uberon
def: "A muscle connecting the hyoidean and branchial arches[unvetted]" [http://www.wordnik.com/words/ceratohyoideus]
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0010956
name: pterygopharyngeal part of superior pharyngeal constrictor
namespace: uberon
synonym: "pars pterygopharyngea (musculus constrictor pharyngis superior)" EXACT [FMA:46638]
synonym: "pterygopharyngeal part of superior constrictor pharyngeus" EXACT [FMA:46638]
synonym: "pterygopharyngeus" RELATED []
xref: FMA:46638
relationship: part_of UBERON:0006329 {source="FMA"} ! superior pharyngeal constrictor

[Term]
id: UBERON:0011085
name: dorsal pharyngeal arch 1
namespace: uberon
def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [VHOG:0000511]
synonym: "dorsal mandibular arch" RELATED [VHOG:0000511]
synonym: "dorsal visceral arch 1" RELATED [VHOG:0000511]
synonym: "palatoquadrate arch" RELATED [VHOG:0000511]
synonym: "upper jaw" RELATED [VHOG:0000511]
synonym: "upper pharyngeal jaw" RELATED [VHOG:0000511]
xref: EFO:0003659
xref: TAO:0001272
xref: VHOG:0000511
xref: ZFA:0001272
relationship: part_of UBERON:0000166 {source="VHOG"} ! oral opening

[Term]
id: UBERON:0011087
name: pharyngeal arch 7
namespace: uberon
synonym: "branchial arch 5" EXACT [ZFA:0001610]
synonym: "gill arch 5" EXACT [ZFA:0001610]
synonym: "visceral arch 7" EXACT [ZFA:0001610]
xref: TAO:0001602
xref: ZFA:0001610
is_a: UBERON:0008896 {source="ZFA"} ! pharyngeal arch 3-7

[Term]
id: UBERON:1000011
name: labial commissure
namespace: uberon
def: "Anatomical structure consisting of either corner of the mouth." [Wikipedia:Labial_commissure_of_mouth]
subset: phenotype_rcn
synonym: "commissura labiorum oris" RELATED LATIN [Wikipedia:Labial_commissure_of_mouth]
synonym: "corner of mouth" RELATED []
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:1000023
name: spleen pulp
namespace: uberon
synonym: "malpighian corpuscles" EXACT [FMA:15845]
synonym: "pulp of spleen" EXACT []
synonym: "splenic pulp" EXACT []
xref: FMA:15845
xref: MA:0002487
xref: ncithesaurus:Splenic_Pulp
xref: SCTID:13515001
relationship: part_of UBERON:0002106 {source="MA"} ! spleen
relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen

[Term]
id: UBERON:1000024
name: parenchyma of spleen
namespace: uberon
synonym: "splenic parenchyma" EXACT [FMA:16029]
xref: FMA:16029
relationship: part_of UBERON:0002106 ! spleen

[Typedef]
id: channels_from
is_transitive: true

[Typedef]
id: channels_into
is_transitive: true

[Typedef]
id: develops_from
is_transitive: true
is_a: has_developmental_contribution_from

[Typedef]
id: develops_into
inverse_of: develops_from

[Typedef]
id: has_developmental_contribution_from
is_transitive: true

[Typedef]
id: has_muscle_insertion
is_a: attaches_to

[Typedef]
id: has_muscle_origin
is_a: attaches_to

[Typedef]
id: has_part
is_transitive: true
inverse_of: part_of

[Typedef]
id: part_of
is_transitive: true

[Typedef]
id: surrounds
inverse_of: surrounded_by