format-version: 1.2
subsetdef: cyclostome_subset "cyclostome structures"
subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology"
subsetdef: developmental_classification "developmental_classification"
subsetdef: disjointness_axiom_removed "A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology."
subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked"
subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes."
subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked"
subsetdef: functional_classification "functional_classification"
subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes"
subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA"
subsetdef: inherited_grouping_class "A grouping class that originates in two or more separate anatomical ontologies. Includes 'region of X' type terms"
subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord,  peripheral nerves, kidneys, ureters, bladder, urethra, gonads"
subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out"
subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements"
subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA"
subsetdef: uberon_slim "Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms"
subsetdef: upper_level "abstract upper-level terms not directly useful for analysis"
subsetdef: upper_ontology_conflict "Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision."
subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO"
synonymtypedef: ATTRIBUTION_REQUIRED "expert consultation and attribution required" 
synonymtypedef: DEVELOPMENTAL "developmental term" 
synonymtypedef: DUBIOUS "dubious or contested synonym" 
synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" 
synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" 
synonymtypedef: PLURAL "plural term" 
synonymtypedef: SENSU "taxonomic disambiguation" 
ontology: uberon/musculoskeletal

[Term]
id: UBERON:0000000
name: processual entity
namespace: uberon
def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity]
subset: upper_level
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
disjoint_from: UBERON:0001062 ! anatomical entity
created_by: cjm
creation_date: 2009-04-09T05:51:24Z

[Term]
id: UBERON:0000003
name: naris
namespace: uberon
def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [UBERON:MAH]
comment: consistency notes: we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure. Taxon notes: in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity
subset: uberon_slim
subset: upper_ontology_conflict
subset: vertebrate_core
xref: AAO:0000311
xref: EHDAA2:0001225
xref: EHDAA:9083
xref: EMAPA:17847
xref: galen:Naris
xref: MA:0000282
xref: SCTID:272650008
xref: VHOG:0000663
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000161 {source="FMA"} ! orifice
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0005725 ! olfactory system
relationship: part_of UBERON:0000033 {source="ZFA"} ! head
relationship: part_of UBERON:0005725 ! olfactory system

[Term]
id: UBERON:0000004
name: olfactory apparatus
namespace: uberon
def: "a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)." [Wikipedia:Nose]
comment: TODO - distinguish generic olfactory apparatus from nose; we have olfactory organ for the generic organ - add new class 'olfactory structure'?
subset: major_organ
subset: uberon_slim
subset: vertebrate_core
synonym: "nasal sac" EXACT SENSU [ZFA:0000047]
synonym: "nose" EXACT []
synonym: "peripheral olfactory organ" EXACT []
synonym: "proboscis" RELATED []
xref: BTO:0000840
xref: EFO:0000828
xref: EHDAA2:0001274
xref: EHDAA:1502
xref: EMAPA:16542
xref: EV:0100037
xref: EV:0100370
xref: FMA:46472
xref: GAID:77
xref: galen:Nose
xref: MA:0000281
xref: MAT:0000139
xref: MESH:A.01.456.505.733
xref: MIAA:0000139
xref: ncithesaurus:Nose
xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA
xref: SCTID:181195007
xref: TAO:0000047
xref: ZFA:0000047
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002268 ! olfactory organ
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0004089 ! midface

[Term]
id: UBERON:0000010
name: peripheral nervous system
namespace: uberon
def: "Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system" [FB:gg, OMD:peripheral+nervous+system, Wikipedia:Peripheral_nervous_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "PNS" RELATED []
xref: AAO:0000429
xref: BILA:0000081
xref: BTO:0001028
xref: EFO:0000891
xref: EHDAA2:0001445
xref: EHDAA:2893
xref: EMAPA:16665
xref: EMAPA:18370
xref: EV:0100335
xref: FBbt:00005098
xref: FMA:9903
xref: GAID:715
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000218
xref: MAT:0000338
xref: MESH:A.08.800
xref: MIAA:0000338
xref: ncithesaurus:Peripheral_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1111
xref: SCTID:362292005
xref: TAO:0000142
xref: VHOG:0000399
xref: XAO:0000178
xref: ZFA:0000142
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001017
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system

[Term]
id: UBERON:0000014
name: zone of skin
namespace: uberon
def: "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
comment: we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive
synonym: "portion of skin" EXACT []
synonym: "region of skin" EXACT []
synonym: "skin" EXACT [MA:0000151]
synonym: "skin region" EXACT []
synonym: "skin zone" EXACT []
xref: EHDAA2:0001844
xref: EHDAA:6530
xref: EV:0100152
xref: FMA:86166
xref: GAID:933
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MA:0000151
xref: MAT:0000284
xref: MESH:A.17.815
xref: MIAA:0000284
xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
xref: SCTID:20795001
xref: VHOG:0000860
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002097 ! skin of body

[Term]
id: UBERON:0000015
name: anatomical boundary
namespace: uberon
def: "Structural anatomical relation which holds between each anatomical entity of one to three dimensions and some immaterial anatomical entity of one lower dimension such that the latter demarcates (delimits) the former from its neighborhood." [FMA:256502]
synonym: "anatomical boundary entity" EXACT [FMA:50705]
xref: AEO:0000192
xref: FMA:50705
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000466 ! immaterial anatomical entity

[Term]
id: UBERON:0000017
name: exocrine pancreas
namespace: uberon
def: "The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]. The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:GO, Wikipedia:Exocrine_pancreas]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "exocrine pancreas" EXACT []
synonym: "exocrine part of pancreas" RELATED [BTO:0000434]
synonym: "pars exocrina pancreatis" EXACT []
xref: AAO:0010407
xref: BTO:0000434
xref: EV:0100093
xref: FMA:16017
xref: MA:0002415
xref: ncithesaurus:Exocrine_Pancreas
xref: SCTID:248202004
xref: TAO:0001249
xref: VHOG:0000048
xref: XAO:0000137
xref: ZFA:0001249
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0003924 ! ventral pancreatic bud
relationship: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0002330 ! exocrine system

[Term]
id: UBERON:0000019
name: camera-type eye
namespace: uberon
alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181
def: "The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid // " [GO:0043010, UBERON:cjm]
comment: AO notes: FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ). MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this
subset: uberon_slim
subset: vertebrate_core
synonym: "camera-type eye plus associated structures" RELATED []
synonym: "eye" BROAD [FMA:54448]
synonym: "orbital part of face" EXACT [FMA:54448]
synonym: "orbital region" EXACT [FMA:54448]
synonym: "regio orbitalis" EXACT [FMA:54448, FMA:TA]
synonym: "vertebrate eye" NARROW []
xref: AAO:0010340
xref: BTO:0004688
xref: EHDAA2:0000484
xref: EHDAA:936
xref: EMAPA:16198
xref: FMA:54448
xref: MA:0000261
xref: ncithesaurus:Eye
xref: NIF_GrossAnatomy:birnlex_1169
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
xref: SCTID:181143004
xref: TAO:0000107
xref: VHOG:0000275
xref: XAO:0000179
xref: ZFA:0000107
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000047 ! simple eye
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003072 {evidence="definitional"} ! optic cup
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0004088 ! ocular region

[Term]
id: UBERON:0000020
name: sense organ
namespace: uberon
def: "An organ that is part of a sense organ system." [Wikipedia:Sense_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "organ of sense organ system" EXACT [OBOL:automatic]
synonym: "organ of sensory organ system" EXACT [OBOL:automatic]
synonym: "organ of sensory system" EXACT [OBOL:automatic]
synonym: "sense organ system organ" EXACT [OBOL:automatic]
synonym: "sensillum" NARROW [WBbt:0006929]
synonym: "sensor" RELATED []
synonym: "sensory organ" EXACT []
synonym: "sensory organ system organ" EXACT [OBOL:automatic]
synonym: "sensory system organ" EXACT [OBOL:automatic]
synonym: "Sinnesorgan" RELATED [BTO:0000202]
xref: AEO:0000094
xref: BTO:0000202
xref: EHDAA2:0001824
xref: EHDAA:500
xref: EMAPA:16192
xref: FBbt:00005155
xref: GAID:63
xref: HAO:0000930
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: MA:0000017
xref: MESH:A.09
xref: SCTID:244485009
xref: VHOG:0001407
xref: WBbt:0006929
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001032 ! sensory system
relationship: part_of UBERON:0001032 ! sensory system

[Term]
id: UBERON:0000021
name: cutaneous appendage
namespace: uberon
def: "Appendage that protrudes from the skin." [UBERON:cjm]
comment: Examples: hair, nail (FMA); feather, claw, hoof, horn, wattle, spur, beak, scale(?), antler, bristle. Editors note: Mammary glands develop by similar mechanisms, and there is an argument for including them here (e.g. PMID:20484386), but these structures do not fit the current definition. TODO: revise after definition of appendage is finalized in CARO2; in addition, verify subtypes w.r.t definition - e.g. beaks may overlap with skin of body rather than being part of it - rhamphotheca may be more appropriate
subset: uberon_slim
synonym: "epidermal appendage" NARROW []
synonym: "epidermal growth" RELATED []
synonym: "skin appendage" EXACT [FMA:71012]
xref: FMA:71012
xref: SCTID:276160000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0002097 ! skin of body

[Term]
id: UBERON:0000023
name: wing
namespace: uberon
def: "Appendage that is used to produce lift for flight through the air." [Wikipedia:Wing]
comment: This class is not monophyletic. See also: GO:0007629
subset: grouping_class
subset: uberon_slim
xref: BTO:0001463
xref: EFO:0000885
xref: GAID:1217
xref: MAT:0000202
xref: MESH:A.13.395.823
xref: MIAA:0000202
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000026 ! appendage

[Term]
id: UBERON:0000025
name: tube
namespace: uberon
def: "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790]
synonym: "epithelial or endothelial tube" EXACT []
xref: galen:Tube
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit

[Term]
id: UBERON:0000026
name: appendage
namespace: uberon
def: "Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage]
comment: GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers
subset: uberon_slim
synonym: "limbs/digits/tail" RELATED [MP:0000001]
xref: AEO:0000193
xref: BILA:0000018
xref: CARO:0010003
xref: EFO:0000799
xref: EHDAA2:0003193
xref: EV:0100155
xref: FBbt:00007000
xref: HAO:0000144
xref: MAT:0000023
xref: MIAA:0000023
xref: ncithesaurus:Appendage
xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA
xref: VAO:0000075
xref: XAO:0000218
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision

[Term]
id: UBERON:0000030
name: lamina propria
namespace: uberon
def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria]
subset: uberon_slim
synonym: "lamina propria mucosa" EXACT []
synonym: "lamina propria mucosae" EXACT []
synonym: "tunica propria" RELATED [BTO:0002330]
xref: BTO:0002330
xref: FMA:62517
xref: ncithesaurus:Lamina_Propria
xref: SCTID:298225002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004923 ! organ component layer
relationship: adjacent_to UBERON:0000483 ! epithelium
relationship: has_part UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000344 ! mucosa

[Term]
id: UBERON:0000032
name: cranial structure
namespace: uberon
def: "skeletal element that is part of a cranium." [UBERON:automatic]
subset: uberon_slim
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: part_of UBERON:0003128 ! cranium
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0000033
name: head
namespace: uberon
alt_id: UBERON:FBbt_00000004-FBbt_00003007-FMA_46565-FMA_7154-FMA_87596-MA_0000023-MA_0000316-MIAA_0000017-MIAA_0000149-MIAA_0000294-MIAA_0000340-WBbt_0005739-XAO_0003024-ZFA_0000737-ZFA_0001114
def: "The head is the anterior-most division of the body [GO]." [GO:0060322, Wikipedia:Head]
subset: uberon_slim
subset: vertebrate_core
synonym: "adult head" NARROW []
synonym: "cephalic area" RELATED [SPD:0000016]
synonym: "head (volume)" EXACT [FMA:7154]
xref: AAO:0010335
xref: AEO:0000106
xref: BILA:0000115
xref: BTO:0000282
xref: EFO:0000964
xref: EHDAA2:0003106
xref: FBbt:00000004
xref: FMA:7154
xref: GAID:61
xref: galen:Head
xref: HAO:0000397
xref: MA:0000023
xref: MAT:0000294
xref: MESH:A.01.456
xref: MIAA:0000294
xref: ncithesaurus:Head
xref: NIF_GrossAnatomy:birnlex_1230
xref: OpenCyc:Mx4rEOLm4rgPEdmAAAACs6hRjg
xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA
xref: SCTID:302548004
xref: SPD:0000016
xref: TAO:0001114
xref: TGMA:0000002
xref: WBbt:0005739
xref: XAO:0003024
xref: ZFA:0001114
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0000948
property_value: "spatially_disjoint_from" UBERON:0002100
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0007811 ! craniocervical region

[Term]
id: UBERON:0000041
name: dermal denticle
namespace: uberon
def: "Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VAO]. small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water[WP]." [VAO:0000079, Wikipedia:Dermal_denticle]
comment: TODO check dentin def // Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone.
subset: uberon_slim
synonym: "placoid scale" EXACT []
xref: VAO:0000079
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004756 ! dermal skeletal element
relationship: has_part UBERON:0001751 ! dentine

[Term]
id: UBERON:0000042
name: serous membrane
namespace: uberon
def: "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]." [Wikipedia:Serosa, Wikipedia:Serous_membrane]
comment: TODO - add generic membrane parent? TODO - split into serosa and serous membrane?
subset: uberon_slim
subset: vertebrate_core
synonym: "serosa" EXACT []
synonym: "tunica serosa" EXACT [FMA:9581]
synonym: "wall of serous sac" EXACT [FMA:9581]
xref: FMA:45637
xref: FMA:9581
xref: GAID:19
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: MESH:A.10.615.789
xref: ncithesaurus:Serosa
xref: SCTID:362878009
xref: TAO:0005425
xref: ZFA:0005425
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004457 ! cavity lining
relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm
relationship: has_part UBERON:0001136 ! mesothelium
relationship: has_part UBERON:0002384 ! connective tissue

[Term]
id: UBERON:0000043
name: tendon
namespace: uberon
def: "A fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons are similar to ligaments except that ligaments join one bone to another. Tendons and muscles work together and can only exert a pulling force." [BTO:0000421, http://en.wikipedia.org/wiki/Tendon, OMD:connective+tissue, OMD:tendon, Wikipedia:Tendon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sinew" RELATED [Wikipedia:Tendon]
xref: AEO:0000091
xref: BTO:0001356
xref: EFO:0000952
xref: EHDAA2:0003091
xref: EMAPA:25053
xref: EV:0100149
xref: FMA:9721
xref: GAID:276
xref: galen:Tendon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Achilles-tendon.jpg/200px-Achilles-tendon.jpg
xref: MA:0000115
xref: MESH:A.02.880
xref: ncithesaurus:Tendon
xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA
xref: SCTID:256667004
xref: VAO:0000073
xref: VHOG:0001286
xref: XAO:0000173
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 {source="MA"} ! connective tissue
relationship: attached_to UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0002204 {source="OG"} ! musculoskeletal system

[Term]
id: UBERON:0000047
name: simple eye
namespace: uberon
def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
subset: grouping_class
subset: uberon_slim
xref: TGMA:0000729
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000970 ! eye

[Term]
id: UBERON:0000055
name: vessel
namespace: uberon
def: "A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm]
comment: compare with UBERON:0008782
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit

[Term]
id: UBERON:0000056
name: ureter
namespace: uberon
def: "The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.[GO]. Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: There are only two ureters, the right and the left ureters." [GO:0090189, Wikipedia:Ureter]
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "metanephric duct" RELATED [ISBN10:0073040584, VHOG:0000605]
xref: AAO:0010254
xref: BTO:0001409
xref: EFO:0000930
xref: EHDAA2:0002139
xref: EHDAA:9341
xref: EMAPA:17950
xref: EV:0100097
xref: FMA:9704
xref: GAID:438
xref: galen:Ureter
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png
xref: MA:0000378
xref: MAT:0000120
xref: MESH:A.05.810.776
xref: MIAA:0000120
xref: ncithesaurus:Ureter
xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA
xref: SCTID:302511008
xref: VHOG:0000605
xref: XAO:0000144
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000025 ! tube
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005179 ! pelvis organ
is_a: UBERON:0006555 ! excretory tube
relationship: continuous_with UBERON:0001224 ! renal pelvis
relationship: continuous_with UBERON:0001255 ! urinary bladder
relationship: develops_from UBERON:0005081 {source="GO"} ! ureter ureteric bud
relationship: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0002355 {xref="MA:0000378"} ! pelvis

[Term]
id: UBERON:0000057
name: urethra
namespace: uberon
def: "A tube which connects the urinary bladder to the outside of the body. In males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening. The external urethral sphincter is a striated muscle that allows voluntary control over urination." [Wikipedia:Urethra]
comment: This class was created automatically from a combination of ontologies
subset: major_organ
subset: organ_slim
subset: uberon_slim
xref: BTO:0001426
xref: EFO:0000931
xref: EMAPA:30901
xref: EV:0100099
xref: FMA:19667
xref: GAID:390
xref: galen:Urethra
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000379
xref: MAT:0000121
xref: MESH:A.05.360.444.492.726
xref: MIAA:0000121
xref: ncithesaurus:Urethra
xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA
xref: SCTID:302513006
xref: VHOG:0001264
xref: XAO:0000153
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: continuous_with UBERON:0001255 ! urinary bladder
relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus
relationship: part_of UBERON:0001556 ! lower urinary tract

[Term]
id: UBERON:0000058
name: duct
namespace: uberon
def: "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
comment: TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
subset: vertebrate_core
synonym: "anatomical duct" EXACT []
synonym: "exocrine duct" RELATED []
synonym: "exocrine gland duct" RELATED []
xref: FMA:30320
xref: galen:Duct
xref: ncithesaurus:Duct
xref: TAO:0005171
xref: XAO:0004000
xref: ZFA:0005171
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit

[Term]
id: UBERON:0000059
name: large intestine
namespace: uberon
def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
subset: major_organ
subset: organ_slim
synonym: "intestinum crassum" RELATED [BTO:0000706]
xref: AAO:0010396
xref: BTO:0000706
xref: EFO:0000840
xref: EMAPA:19252
xref: EV:0100077
xref: FMA:7201
xref: GAID:306
xref: galen:LargeIntestine
xref: MA:0000333
xref: MESH:A.03.492.411.495
xref: MIAA:0000046
xref: ncithesaurus:Large_Intestine
xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
xref: SCTID:181254001
xref: VHOG:0000054
xref: XAO:0000131
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0000060
name: anatomical wall
namespace: uberon
alt_id: UBERON:0009915
def: "Anatomical organ component enclosing an organ cavity." [FMA:82482]
comment: merged FMA organ wall in to this class
synonym: "wall" EXACT []
synonym: "wall of organ" EXACT [FMA:82482]
xref: EMAPA:25036
xref: FMA:82482
xref: galen:Wall
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0000061
name: anatomical structure
namespace: uberon
alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094
def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003]
subset: upper_level
synonym: "biological structure" EXACT []
xref: AAO:0010825
xref: AEO:0000003
xref: BILA:0000003
xref: CARO:0000003
xref: EHDAA2:0003003
xref: FBbt:00007001
xref: FMA:67135
xref: GAID:781
xref: HAO:0000003
xref: MA:0003000
xref: MESH:A.13
xref: SCTID:362889002
xref: TAO:0000037
xref: TGMA:0001823
xref: XAO:0003000
xref: ZFA:0000037
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000465 ! material anatomical entity

[Term]
id: UBERON:0000062
name: organ
namespace: uberon
def: "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)]
comment: note that CARO does not include a generic 'organ' class, only simple and compound organ
xref: BILA:0000053
xref: EFO:0000634
xref: FMA:67498
xref: MA:0003001
xref: ncithesaurus:Organ
xref: NIF_GrossAnatomy:birnlex_4
xref: OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000467 ! anatomical system

[Term]
id: UBERON:0000063
name: organ segment
namespace: uberon
def: "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140]
synonym: "organ region with fixed fiat boundary" EXACT [FMA:86140]
synonym: "segment of organ" EXACT [FMA:86140]
xref: FMA:86140
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part

[Term]
id: UBERON:0000064
name: organ part
namespace: uberon
def: "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472]
subset: disjointness_axiom_removed
subset: upper_level
synonym: "cardinal organ part" EXACT []
xref: EFO:0000635
xref: FMA:82472
xref: SCTID:91717005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000062 ! organ

[Term]
id: UBERON:0000065
name: respiratory tract
namespace: uberon
def: "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
xref: EHDAA2:0001606
xref: EHDAA:1568
xref: EHDAA:2219
xref: EMAPA:16737
xref: MESH:A.04
xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA
xref: SCTID:361110005
xref: VHOG:0000393
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0000066
name: fully formed stage
namespace: uberon
def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. " [UBERON:cjm]
synonym: "adult stage" BROAD []
synonym: "fully formed animal stage" EXACT []
synonym: "juvenile-adult stage" EXACT []
xref: BTO:0001043
xref: FBdv:00005369
xref: WBls:0000041
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000092 ! post-embryonic stage
relationship: preceded_by UBERON:0000111 ! organogenesis stage

[Term]
id: UBERON:0000067
name: embryo stage part
namespace: uberon
def: "A stage that is part of the embryo stage." [UBERON:cjm]
synonym: "embryonic stage part" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000105 ! life cycle stage
intersection_of: UBERON:0000105 ! life cycle stage
intersection_of: part_of UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0000068 ! embryo stage

[Term]
id: UBERON:0000068
name: embryo stage
namespace: uberon
def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." []
synonym: "embryogenesis" RELATED []
synonym: "embryonic stage" EXACT []
xref: EV:0300001
xref: FBdv:00005289
xref: OGES:000000
xref: OGES:000022
xref: SCTID:296280003
xref: XAO:1000012
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000105 ! life cycle stage
disjoint_from: UBERON:0000092 ! post-embryonic stage
relationship: part_of UBERON:0000104 ! life cycle

[Term]
id: UBERON:0000069
name: larval stage
namespace: uberon
def: "a distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva]
comment: It is a misunderstanding that the larval form always reflects the group's evolutionary history. It could be the case, but often the larval stage has evolved secondarily, as in insects. In these cases the larval form might differ more from the group's common origin than the adult form[WP]. Uberon includes clade-specific subclasses.
synonym: "ammocoete" NARROW SENSU [Wikipedia:Larva]
synonym: "ammocoete stage" NARROW SENSU [Wikipedia:Larva]
synonym: "bipinnaria" NARROW SENSU [Wikipedia:Larva]
synonym: "bipinnaria stage" NARROW SENSU [Wikipedia:Larva]
synonym: "caterpillar" NARROW SENSU [Wikipedia:Larva]
synonym: "caterpillar stage" NARROW SENSU [Wikipedia:Larva]
synonym: "glochidium" NARROW SENSU [Wikipedia:Larva]
synonym: "glochidium stage" NARROW SENSU [Wikipedia:Larva]
synonym: "grub" NARROW SENSU [Wikipedia:Larva]
synonym: "grub stage" NARROW SENSU [Wikipedia:Larva]
synonym: "larva" RELATED []
synonym: "larva stage" EXACT []
synonym: "leptocephalus" NARROW SENSU [Wikipedia:Larva]
synonym: "leptocephalus stage" NARROW SENSU [Wikipedia:Larva]
synonym: "maggot" NARROW SENSU [Wikipedia:Larva]
synonym: "maggot stage" NARROW SENSU [Wikipedia:Larva]
synonym: "naiad, nymph" NARROW SENSU [Wikipedia:Larva]
synonym: "naiad, nymph stage" NARROW SENSU [Wikipedia:Larva]
synonym: "nauplius" NARROW SENSU [Wikipedia:Larva]
synonym: "nauplius stage" NARROW SENSU [Wikipedia:Larva]
synonym: "nymph" NARROW SENSU [Wikipedia:Larva]
synonym: "nymph stage" NARROW SENSU [Wikipedia:Larva]
synonym: "planula" NARROW SENSU [Wikipedia:Larva]
synonym: "planula stage" NARROW SENSU [Wikipedia:Larva]
synonym: "trochophore" NARROW SENSU [Wikipedia:Larva]
synonym: "trochophore stage" NARROW SENSU [Wikipedia:Larva]
synonym: "veliger" NARROW SENSU [Wikipedia:Larva]
synonym: "veliger stage" NARROW SENSU [Wikipedia:Larva]
synonym: "wriggler" NARROW SENSU [Wikipedia:Larva]
synonym: "wriggler stage" NARROW SENSU [Wikipedia:Larva]
synonym: "zoea" NARROW SENSU [Wikipedia:Larva]
synonym: "zoea stage" NARROW SENSU [Wikipedia:Larva]
xref: AEO:0000126
xref: BTO:0000915
xref: BTO:0000954
xref: EFO:0001303
xref: OGES:000008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000092 ! post-embryonic stage
relationship: directly_preceded_by UBERON:0000068 ! embryo stage

[Term]
id: UBERON:0000072
name: segment of respiratory tract
namespace: uberon
def: "An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic]
comment: Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole
synonym: "respiratory tract" RELATED [MA:0000434]
xref: MA:0000434
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000065 ! respiratory tract

[Term]
id: UBERON:0000073
name: regional part of nervous system
namespace: uberon
def: "An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
comment: grouping class
synonym: "part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
xref: ncithesaurus:Nervous_System_Part
xref: NIF_GrossAnatomy:birnlex_1157
xref: SCTID:25087005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0001016 ! nervous system
created_by: Melissa Haendel
creation_date: 2009-06-18T09:00:04Z

[Term]
id: UBERON:0000075
name: subdivision of skeletal system
namespace: uberon
alt_id: UBERON:0010322
def: "Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
synonym: "skeletal system part" RELATED []
synonym: "skeletal system subdivision" EXACT [FMA:85544]
xref: FMA:85544
xref: galen:ComplexSkeletalStructure
xref: ncithesaurus:Skeletal_System_Part
xref: SCTID:118966000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="VAO"} ! anatomical cluster
relationship: part_of UBERON:0001434 ! skeletal system

[Term]
id: UBERON:0000076
name: external ectoderm
namespace: uberon
def: "The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm]
comment: Editor note: merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube).
synonym: "surface ectoderm" EXACT []
xref: EHDAA2:0001968
xref: EHDAA:1494
xref: EHDAA:350
xref: EHDAA:4784
xref: EHDAA:4790
xref: EHDAA:4796
xref: EHDAA:7860
xref: EMAPA:16096
xref: EMAPA:16539
xref: FMA:87656
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png
xref: ncithesaurus:Surface_Ectoderm
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000923 ! germ layer
relationship: part_of UBERON:0000924 ! ectoderm

[Term]
id: UBERON:0000077
name: mixed endoderm/mesoderm-derived structure
namespace: uberon
def: "An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm]
comment: Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0000078
name: mixed ectoderm/mesoderm/endoderm-derived structure
namespace: uberon
def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm]
comment: Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0000079
name: male reproductive system
namespace: uberon
def: "the organs associated with producing offspring in the gender that produces spermatozoa." [MP:0001145]
synonym: "genitalia of male organism" EXACT [OBOL:automatic]
synonym: "male genital organ" RELATED [BTO:0000082]
synonym: "male genital system" EXACT [FMA:45664]
synonym: "male genitalia" EXACT []
synonym: "male genitals" EXACT []
synonym: "male organism genitalia" EXACT [OBOL:automatic]
synonym: "male organism reproductive system" EXACT [OBOL:automatic]
synonym: "male reproductive tract" RELATED [MA:0000396]
synonym: "reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "systema genitale masculinum" RELATED [BTO:0000082]
xref: BTO:0000082
xref: EFO:0000970
xref: EHDAA2:0001054
xref: EHDAA:8136
xref: EMAPA:17968
xref: EV:0100101
xref: FBbt:00004927
xref: FMA:45664
xref: GAID:386
xref: HAO:0000505
xref: MA:0000396
xref: MESH:A.05.360.444
xref: ncithesaurus:Male_Reproductive_System
xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA
xref: SCTID:361340001
xref: TGMA:0000634
xref: VHOG:0000725
xref: WBbt:0008423
xref: XAO:0000155
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000990 ! reproductive system
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003101 ! male organism
disjoint_from: UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0003101 ! male organism

[Term]
id: UBERON:0000080
name: mesonephros
namespace: uberon
def: "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros]
comment: By contrast to the pronephros, the histological features of the mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP] comment: Taxon notes: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain[WP]
subset: organ_slim
subset: vertebrate_core
synonym: "mesonephric kidney" EXACT [XAO:0000141]
synonym: "mesonephroi" EXACT PLURAL [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
synonym: "opisthonephros" RELATED [VHOG:0000038, XAO:0000141]
synonym: "opisto nephros" RELATED []
synonym: "opistonephros" RELATED [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html]
synonym: "Wolffian body" EXACT [BTO:0001542, GOC:yaf, MESH:A.16.254.500, Wikipedia:Mesonephros]
xref: AAO:0010384
xref: BTO:0001542
xref: EFO:0000928
xref: EHDAA2:0001130
xref: EHDAA:1581
xref: EHDAA:5903
xref: EMAPA:16744
xref: EMAPA:17369
xref: EMAPA:27644
xref: FMA:72171
xref: GAID:1308
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray986.png/200px-Gray986.png
xref: MESH:A.16.254.500
xref: ncithesaurus:Mesonephros
xref: SCTID:308799002
xref: TAO:0000529
xref: VHOG:0000038
xref: XAO:0000141
xref: ZFA:0000529
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0002120 ! pronephros

[Term]
id: UBERON:0000081
name: metanephros
namespace: uberon
def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis." [GO:0001656, Wikipedia:Metanephros#Metanephros]
comment: TODO check developmental relationships
subset: organ_slim
synonym: "definite kidney" RELATED [BTO:0001543]
synonym: "definitive kidney" RELATED [BTO:0001543]
synonym: "hind kidney" RELATED [BTO:0001543]
synonym: "metanephron" EXACT [BTO:0001543]
xref: BTO:0001543
xref: EHDAA2:0001137
xref: EHDAA:3089
xref: EHDAA:5911
xref: EMAPA:17207
xref: EMAPA:17373
xref: FMA:72172
xref: ncithesaurus:Metanephros
xref: SCTID:308797000
xref: VHOG:0000039
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: developmentally_replaces UBERON:0000080 {source="ISBN:9780878932504"} ! mesonephros
relationship: develops_from UBERON:0003220 {evidence="definitional"} ! metanephric mesenchyme
relationship: develops_from UBERON:0005080 {source="GO"} ! metanephric ureteric bud
relationship: develops_from UBERON:0005753 ! caudal part of nephrogenic cord

[Term]
id: UBERON:0000083
name: mesonephric tubule
namespace: uberon
def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules]
comment: TODO check
xref: AAO:0010389
xref: EHDAA2:0001134
xref: EMAPA:27588
xref: EMAPA:27659
xref: VHOG:0000500
xref: XAO:0000148
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0005103 ! mesonephric epithelium
is_a: UBERON:0006555 ! excretory tube
intersection_of: UBERON:0003914 ! epithelial tube
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros

[Term]
id: UBERON:0000084
name: ureteric bud
namespace: uberon
def: "a protrusion from the mesonephric duct during the development of the urinary and reproductive organs. It later develops into the adult kidney, except for the nephrons, which, in contrast, originate from the metanephric blastema[WP]. epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]" [MP:0010979, PMID:19828308, Wikipedia:Ureteric_bud]
synonym: "diverticulum" RELATED [BTO:0001646]
synonym: "metanephric bud" RELATED [BTO:0001646]
synonym: "metanephric diverticulum" RELATED [Wikipedia:Metanephros#Metanephros]
xref: BTO:0001646
xref: EHDAA2:0002140
xref: EHDAA:3091
xref: EHDAA:5917
xref: EMAPA:17209
xref: EMAPA:17376
xref: ncithesaurus:Metanephric_Diverticulum
xref: SCTID:361528000
xref: VHOG:0000541
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from UBERON:0003074 {source="EHDAA2"} ! mesonephric duct
relationship: induced_by UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme
relationship: part_of UBERON:0003074 ! mesonephric duct

[Term]
id: UBERON:0000092
name: post-embryonic stage
namespace: uberon
def: "stage succeeding embryo, including mature structure" [UBERON:cjm]
synonym: "postembryonic" RELATED []
synonym: "postembryonic stage" EXACT []
xref: OGES:000010
xref: OGES:000014
xref: OGES:000024
xref: WBls:0000022
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000104 ! life cycle
relationship: preceded_by UBERON:0000068 ! embryo stage

[Term]
id: UBERON:0000093
name: sulcus
namespace: uberon
def: "a depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
created_by: cjm
creation_date: 2009-04-09T06:23:22Z

[Term]
id: UBERON:0000094
name: membrane organ
namespace: uberon
def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145]
synonym: "membrane of organ" EXACT []
xref: FMA:7145
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
created_by: cjm
creation_date: 2009-07-30T05:19:13Z

[Term]
id: UBERON:0000101
name: lobe of lung
namespace: uberon
def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO]
synonym: "lung lobe" EXACT []
synonym: "pulminory lobe" EXACT []
synonym: "pulmonary lobe" EXACT [FMA:7311]
xref: FMA:7311
xref: galen:LobeOfLung
xref: ncithesaurus:Lung_Lobe
xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA
xref: SCTID:245524004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung

[Term]
id: UBERON:0000103
name: life cycle stage boundary
namespace: uberon
def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [UBERON:cjm]
subset: upper_level
synonym: "life cycle stage transition event" EXACT []
synonym: "life cycle stage transition instant" EXACT []
xref: span:ProcessBoundary
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000000 ! processual entity
disjoint_from: UBERON:0000105 ! life cycle stage

[Term]
id: UBERON:0000104
name: life cycle
namespace: uberon
def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [UBERON:cjm]
subset: upper_level
synonym: "life" EXACT []
synonym: "lifespan" EXACT []
xref: FBdv_root:00000000
xref: ncithesaurus:Life
xref: OGES:000011
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000105 ! life cycle stage

[Term]
id: UBERON:0000105
name: life cycle stage
namespace: uberon
def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:cjm]
subset: upper_level
synonym: "developmental stage" EXACT []
synonym: "stage" NARROW []
xref: BILS:0000105
xref: EFO:0000399
xref: ncithesaurus:Developmental_Stage
xref: WBls:0000002
xref: XAO:1000000
xref: ZFS:0100000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000000 ! processual entity
relationship: has_end UBERON:0000103 ! life cycle stage boundary
relationship: has_start UBERON:0000103 ! life cycle stage boundary

[Term]
id: UBERON:0000106
name: zygote stage
namespace: uberon
def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [Wikipedia:Zygote]
synonym: "1-cell stage" EXACT []
synonym: "fertilized egg stage" EXACT [BTO:0000854]
synonym: "one cell stage" EXACT []
xref: BILS:0000106
xref: EHDAA:27
xref: EMAPA:16033
xref: VHOG:0000745
xref: XAO:1000001
xref: ZFS:0000001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000067 ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: starts UBERON:0000104 ! life cycle

[Term]
id: UBERON:0000107
name: cleavage stage
namespace: uberon
def: "The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)]
xref: BILS:0000107
xref: EFO:0001290
xref: MESH:A.16.254.270
xref: OGES:000015
xref: OGES:000020
xref: XAO:1000004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000067 ! embryo stage part
relationship: directly_preceded_by UBERON:0000106 ! zygote stage
relationship: part_of UBERON:0000068 ! embryo stage

[Term]
id: UBERON:0000108
name: blastula stage
namespace: uberon
def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
xref: BILS:0000108
xref: EFO:0001282
xref: GAID:1294
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png
xref: OGES:000003
xref: OGES:000016
xref: OGES:000021
xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
xref: XAO:1000003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000067 ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000107 ! cleavage stage

[Term]
id: UBERON:0000109
name: gastrula stage
namespace: uberon
def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369]
xref: BILS:0000109
xref: EFO:0001296
xref: FBdv:00005317
xref: OGES:000004
xref: OGES:000019
xref: XAO:1000005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000067 ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000108 ! blastula stage

[Term]
id: UBERON:0000110
name: neurula stage
namespace: uberon
def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841]
xref: BILS:0000110
xref: XAO:1000006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000067 ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000109 ! gastrula stage

[Term]
id: UBERON:0000111
name: organogenesis stage
namespace: uberon
def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis]
synonym: "segmentation stage" RELATED []
xref: BILS:0000111
xref: OGES:000005
xref: OGES:000032
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000067 ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000110 ! neurula stage

[Term]
id: UBERON:0000115
name: lung epithelium
namespace: uberon
def: "the epithelial layer of the lung." [MP:0006382]
synonym: "epithelial tissue of lung" EXACT [OBOL:automatic]
synonym: "epithelium of lung" EXACT [OBOL:automatic]
synonym: "lung epithelial tissue" EXACT [OBOL:automatic]
synonym: "pulmonary epithelium" RELATED [BTO:0001653]
xref: BTO:0001653
xref: MA:0001783
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004802 ! respiratory tract epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002048 ! lung
relationship: develops_from UBERON:0001041 ! foregut
relationship: part_of UBERON:0002048 ! lung

[Term]
id: UBERON:0000117
name: respiratory tube
namespace: uberon
def: "A tube in the respiratory tract." [GO:0030323]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000025 ! tube
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000025 ! tube
intersection_of: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000065 ! respiratory tract

[Term]
id: UBERON:0000118
name: lung bud
namespace: uberon
def: "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds]
synonym: "lung bud" RELATED PLURAL []
synonym: "primary lung bud" RELATED [GO:0060572]
synonym: "respiratory diverticulum" RELATED [Wikipedia:Lung_buds]
xref: BTO:0001643
xref: EHDAA2:0004089
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png
xref: ncithesaurus:Respiratory_Diverticulum
xref: SCTID:361427007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud
is_a: UBERON:0005911 ! endo-epithelium
relationship: adjacent_to UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
relationship: develops_from UBERON:0005597 ! lung primordium
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium

[Term]
id: UBERON:0000119
name: cell layer
namespace: uberon
def: "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm]
synonym: "cell sheath" RELATED []
synonym: "layer of cells" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue

[Term]
id: UBERON:0000122
name: neuron projection bundle
namespace: uberon
alt_id: UBERON:0005163
def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS]
synonym: "funiculus" EXACT []
synonym: "nerve fiber bundle" EXACT [FBbt:00005099]
synonym: "neural fiber bundle" EXACT []
xref: CARO:0001001
xref: FBbt:00005099
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0005162 ! multi-cell-component structure
relationship: part_of UBERON:0001016 ! nervous system

[Term]
id: UBERON:0000130
name: transverse foramen
namespace: uberon
def: "Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves." [Wikipedia:Transverse_foramen]
synonym: "foramen transversarium" EXACT [Wikipedia:Transverse_foramen]
synonym: "foramen transversarium of cervical vertebra" EXACT [FMA:23998]
synonym: "transverse foramen of cervical vertebra" EXACT [FMA:23997]
xref: FMA:23997
xref: SCTID:280735005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 {source="FMA"} ! anatomical conduit
relationship: surrounded_by UBERON:0001077 ! transverse process of vertebra

[Term]
id: UBERON:0000144
name: trochlea of humerus
namespace: uberon
def: "The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna." [Wikipedia:Trochlea_of_humerus]
synonym: "humeral trochlea" EXACT [FMA:23370]
xref: FMA:23370
xref: SCTID:282817004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0004404 ! distal epiphysis of humerus

[Term]
id: UBERON:0000151
name: pectoral fin
namespace: uberon
def: "The paired pectoral fins are located on each side, usually just behind the operculum, and are homologous to the forelimbs of tetrapods." [Wikipedia:Pectoral_fin#Fins]
comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. The Actinopterygii (ray finned fish) pectoral and pelvic fins aren't homologous as fore- or hindlimbs to those of tetrapods, whereas those of the Sarcopterygii (lobe finned fish) are in fact homologous.
xref: BTO:0004653
xref: SCTID:416982006
xref: TAO:0001161
xref: ZFA:0001161
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002534 ! paired fin
relationship: develops_from UBERON:0005419 ! forelimb/pectoral fin bud
relationship: part_of UBERON:0000153 ! anterior region of body

[Term]
id: UBERON:0000152
name: pelvic fin
namespace: uberon
def: "The paired pelvic or ventral fins are located ventrally below the pectoral fins. They are homologous to the hindlimbs of tetrapods. The pelvic fin assists the fish in going up or down through the water, turning sharply, and stopping quickly." [Wikipedia:Pectoral_fin#Fins]
comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs.
xref: BTO:0004651
xref: EFO:0003644
xref: TAO:0001184
xref: ZFA:0001184
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002534 ! paired fin
relationship: develops_from UBERON:0005420 ! hindlimb/pelvic fin bud
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0000153
name: anterior region of body
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: anterior_to UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0000154
name: posterior region of body
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision

[Term]
id: UBERON:0000158
name: membranous layer
namespace: uberon
synonym: "membranous organ component" EXACT [FMA:82500]
xref: FMA:82500
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004923 ! organ component layer

[Term]
id: UBERON:0000160
name: intestine
namespace: uberon
alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338
def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine]
comment: MA also has a class MA:0001524 bowel, not clear how this is different
subset: uberon_slim
subset: vertebrate_core
synonym: "bowel" EXACT []
xref: AAO:0000246
xref: ANISEED:1235303
xref: BTO:0000648
xref: EFO:0000834
xref: EV:0100071
xref: FMA:7199
xref: GAID:295
xref: galen:Intestine
xref: MA:0000328
xref: MA:0001524
xref: MESH:A.03.492.411
xref: MIAA:0000043
xref: ncithesaurus:Intestine
xref: SCTID:256876008
xref: TAO:0001338
xref: VHOG:0000056
xref: WBbt:0005772
xref: XAO:0000129
xref: ZFA:0001338
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0000161
name: orifice
namespace: uberon
def: "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724]
comment: in FMA, this is an anatomical conduit *space*, rather than anatomical conduit
subset: upper_ontology_conflict
synonym: "anatomical orifice" EXACT [FMA:3724]
synonym: "anatomical ostium" EXACT [FMA:3724]
synonym: "hilum" NARROW []
xref: FMA:3724
xref: SCTID:91837002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit

[Term]
id: UBERON:0000162
name: cloaca
namespace: uberon
def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]
synonym: "cloacal chamber" RELATED []
synonym: "vent" RELATED []
xref: AAO:0000095
xref: GAID:1206
xref: MESH:A.13.223
xref: ncithesaurus:Cloaca
xref: SCTID:362857006
xref: TAO:0000330
xref: VHOG:0001186
xref: WBbt:0005774
xref: XAO:0000244
xref: ZFA:0000330
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000161 ! orifice
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0004122 ! genitourinary system

[Term]
id: UBERON:0000163
name: embryonic cloaca
namespace: uberon
def: "Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
comment: compare UBERON:0000162 cloaca
synonym: "cloaca" RELATED SENSU []
xref: EHDAA2:0000256
xref: EHDAA:4895
xref: EMAPA:27573
xref: EMAPA:27638
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000162 ! cloaca
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0000164
name: primitive urogenital sinus
namespace: uberon
def: "Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Urogenital_sinus]
comment: Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP]
synonym: "fetal UGS" EXACT [PMID:18977204]
synonym: "UGS" EXACT [MP:0010116]
synonym: "urogenital sinus" EXACT [MP:0010116]
xref: EHDAA2:0004060
xref: EHDAA:5029
xref: EHDAA:5919
xref: EMAPA:17211
xref: EMAPA:17379
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: ncithesaurus:Urogenital_Sinus
xref: SCTID:50961009
xref: VHOG:0000414
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000163 ! embryonic cloaca
relationship: part_of UBERON:0001008 {source="EHDAA2"} ! excretory system

[Term]
id: UBERON:0000165
name: mouth
namespace: uberon
def: "First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
comment: TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
subset: major_organ
subset: uberon_slim
subset: vertebrate_core
synonym: "adult mouth" EXACT []
synonym: "cavitas oris" RELATED [BTO:0001090]
synonym: "cavum oris" RELATED [BTO:0001090]
synonym: "mouth cavity" RELATED [BTO:0001090]
synonym: "oral vestibule" RELATED [BTO:0001090]
synonym: "regio oralis" EXACT [FMA:49184, FMA:TA]
synonym: "rima oris" RELATED [BTO:0001090]
synonym: "stoma" RELATED []
synonym: "vestibule of mouth" RELATED [BTO:0001090]
synonym: "vestibulum oris" RELATED [BTO:0001090]
xref: AAO:0010355
xref: BTO:0001090
xref: EFO:0000825
xref: FBbt:00003126
xref: FMA:49184
xref: GAID:75
xref: galen:Mouth
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0002474
xref: MAT:0000038
xref: MESH:A.01.456.505.631
xref: MIAA:0000038
xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
xref: TADS:0000040
xref: TAO:0000547
xref: TGMA:0000131
xref: VHOG:0000812
xref: XAO:0003029
xref: ZFA:0000547
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001444 ! subdivision of head
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000930 ! stomodeum
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0000166
name: oral opening
namespace: uberon
def: "The opening of the head through which food passes into the body." [NLM:mouth]
comment: note MA includes as parts of 'oral region' the tongue, tonsils, etc, so an equivalence to the oral opening itself may not be appropriate.
subset: uberon_slim
subset: vertebrate_core
synonym: "adult mouth" RELATED []
synonym: "mouth" RELATED []
synonym: "oral fissure" EXACT [FMA:59806]
synonym: "oral orifice" EXACT [FMA:59806]
synonym: "oral part of face" EXACT []
synonym: "oral region" EXACT []
synonym: "orofacial cavity" RELATED []
synonym: "subdivision of mouth" EXACT []
xref: BTO:0004698
xref: EHDAA2:0001326
xref: EHDAA:542
xref: EMAPA:16262
xref: FMA:59806
xref: MA:0000341
xref: TAO:0000590
xref: TGMA:0000131
xref: VHOG:0000280
xref: ZFA:0000590
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000161 {source="FMA"} ! orifice
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0000167
name: oral cavity
namespace: uberon
subset: uberon_slim
subset: vertebrate_core
synonym: "buccal cavity" EXACT [FMA:20292]
synonym: "cavity of mouth" EXACT []
xref: AAO:0000053
xref: AAO:0000960
xref: EFO:0001975
xref: EHDAA2:0001324
xref: EHDAA:6970
xref: EMAPA:17411
xref: EV:0100057
xref: FMA:20292
xref: HAO:0000669
xref: ncithesaurus:Oral_Cavity
xref: SCTID:181220002
xref: TAO:0001027
xref: TGMA:0000102
xref: VHOG:0000188
xref: WBbt:0005255
xref: XAO:0000126
xref: ZFA:0001027
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0000170
name: pair of lungs
namespace: uberon
synonym: "lungs" EXACT []
synonym: "lungs pair" EXACT []
synonym: "pulmones" EXACT [FMA:68877, FMA:TA]
synonym: "set of lungs" EXACT []
xref: BTO:0000763
xref: EFO:0000934
xref: FMA:68877
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_part UBERON:0002167 ! right lung
relationship: has_part UBERON:0002168 ! left lung

[Term]
id: UBERON:0000171
name: respiration organ
namespace: uberon
def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585]
subset: functional_classification
subset: organ_slim
synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic]
synonym: "breathing organ" EXACT []
synonym: "gas exchange organ" RELATED []
synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "organ of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory organ" EXACT []
synonym: "respiratory system organ" EXACT [OBOL:automatic]
xref: EMAPA:17607
xref: SCTID:272626006
xref: SPD:0000428
xref: TGMA:0001247
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0000178
name: blood
namespace: uberon
def: "Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid)." [FMA:9670, Wikipedia:Blood]
subset: uberon_slim
subset: vertebrate_core
synonym: "portion of blood" EXACT []
synonym: "vertebrate blood" EXACT []
synonym: "whole blood" RELATED [BTO:0000089]
xref: AAO:0000046
xref: BTO:0000089
xref: EFO:0000296
xref: EHDAA2:0000176
xref: EHDAA:418
xref: EMAPA:16332
xref: ENVO:02000027
xref: EV:0100047
xref: FMA:9670
xref: GAID:965
xref: galen:Blood
xref: MA:0000059
xref: MESH:A.12.207.152
xref: MIAA:0000315
xref: ncithesaurus:Blood
xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA
xref: TAO:0000007
xref: VHOG:0000224
xref: XAO:0000124
xref: ZFA:0000007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0004535 ! cardiovascular system

[Term]
id: UBERON:0000179
name: haemolymphatic fluid
namespace: uberon
def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." []
synonym: "blood or blood analog" RELATED []
synonym: "haematological system portion of organism substance" EXACT [OBOL:automatic]
synonym: "haemopoietic system portion of organism substance" EXACT [OBOL:automatic]
synonym: "hematopoietic system portion of organism substance" EXACT [OBOL:automatic]
synonym: "organa haemopoietica portion of organism substance" EXACT [OBOL:automatic]
synonym: "portion of organism substance of haematological system" EXACT [OBOL:automatic]
synonym: "portion of organism substance of haemopoietic system" EXACT [OBOL:automatic]
synonym: "portion of organism substance of hematopoietic system" EXACT [OBOL:automatic]
synonym: "portion of organism substance of organa haemopoietica" EXACT [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000463 ! portion of organism substance
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002390 ! hematopoietic system
created_by: cjm
creation_date: 2009-04-08T04:38:19Z

[Term]
id: UBERON:0000199
name: neck of radius
namespace: uberon
def: "the narrow part of the shaft of the radius just below the head." [http://www.medilexicon.com/medicaldictionary.php?t=58913]
synonym: "radial neck" EXACT [FMA:23479]
xref: FMA:23479
xref: galen:NeckOfRadius
xref: SCTID:181942005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius

[Term]
id: UBERON:0000209
name: tetrapod frontal bone
namespace: uberon
alt_id: UBERON:FMA_9613-MA_0001469-ZFA_0000486
def: "In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities." [Wikipedia:Frontal_bone]
comment: Taxon notes: fused in humans, paired in other animals Development notes: In the mouse the parietal originates from cephalic paraxial mesoderm (Jiang 2000; Morriss-Kay 2001), whereas in the chicken it is traced back to either mesodermal (Noden 1978) or neural crest (Couly 1992, 1993).
synonym: "frontal" NARROW [AAO:0000206]
synonym: "frontal bone" NARROW SENSU [FMA:52734, MA:0001466]
synonym: "os frontal" NARROW SENSU [Wikipedia:Frontal_bone]
xref: AAO:0000206
xref: EMAPA:19016
xref: FMA:52734
xref: GAID:226
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray136.png/200px-Gray136.png
xref: MA:0001466
xref: MESH:A.02.835.232.781.375
xref: ncithesaurus:Frontal_Bone
xref: SCTID:181793006
xref: VAO:0000208
xref: VHOG:0001324
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004766 ! cranial bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: adjacent_to UBERON:0001697 ! orbit
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0000210
name: tetrapod parietal bone
namespace: uberon
alt_id: UBERON:FMA_52734-MA_0001466-ZFA_0000514
def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [Wikipedia:Parietal_bone, ZFA:0000514]
comment: Taxon notes: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods[various]. In many non-mammalian tetrapods, they are bordered to the rear by a pair of postparietal bones that may be solely in the roof of the skull, or slope downwards to contribute to the back of the skull, depending on the species. In the living tuatara, and many fossil species, a small opening, the parietal foramen, lies between the two parietal bones. This opening is the location of a third eye in the midline of the skull, which is much smaller than the two main eyes[WP]
synonym: "frontal bone" NARROW [TAO:0000514]
synonym: "os parietale" RELATED [Wikipedia:Parietal_bone]
synonym: "parietal" NARROW SENSU [AAO:0000390]
synonym: "parietal bone" NARROW SENSU [FMA:9613]
synonym: "teleost frontal bone" NARROW [TAO:0000514]
xref: AAO:0000390
xref: EMAPA:18715
xref: FMA:9613
xref: GAID:229
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray132.png/200px-Gray132.png
xref: MA:0001469
xref: MESH:A.02.835.232.781.651
xref: ncithesaurus:Parietal_Bone
xref: SCTID:181794000
xref: VHOG:0001324
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004766 ! cranial bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0000211
name: ligament
namespace: uberon
def: "Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA]." [FMA:21496, Wikipedia:Ligament]
comment: Note this groups both skeletal and non-skeletal ligaments. What is called a "ligament" in many AOs is actually a skeletal ligament
subset: uberon_slim
subset: vertebrate_core
synonym: "ligament organ" EXACT [FMA:21496]
xref: EFO:0001966
xref: FMA:21496
xref: galen:Ligament
xref: MA:0000113
xref: ncithesaurus:Ligament
xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA
xref: SCTID:182358004
xref: VHOG:0001272
xref: XAO:0004031
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue

[Term]
id: UBERON:0000218
name: vertebral arch of axis
namespace: uberon
synonym: "vertebral foramen of second cervical vertebra" EXACT []
xref: FMA:24053
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008434 ! cervical vertebral arch
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0001093 ! second cervical vertebra
relationship: part_of UBERON:0001093 ! second cervical vertebra

[Term]
id: UBERON:0000219
name: vertebral foramen of atlas
namespace: uberon
def: "." [Wikipedia:Atlas_(anatomy)#Vertebral_foramen]
synonym: "vertebral foramen of first cervical vertebra" EXACT []
xref: FMA:24293
xref: SCTID:281228008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008429 ! cervical vertebral foramen
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0001092 ! first cervical vertebra
relationship: part_of UBERON:0001092 ! first cervical vertebra

[Term]
id: UBERON:0000220
name: atlanto-occipital joint
namespace: uberon
def: "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital" [Wikipedia:Atlanto-occipital_joint]
synonym: "articulatio atlanto-occipitalis" EXACT [FMA:24939]
synonym: "craniovertebral joint" EXACT [FMA:24939]
xref: FMA:24939
xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto
xref: SCTID:361831006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 {source="FMA"} ! synovial joint
relationship: adjacent_to UBERON:0001092 ! first cervical vertebra
relationship: adjacent_to UBERON:0001676 ! occipital bone

[Term]
id: UBERON:0000303
name: adductor longus
namespace: uberon
alt_id: UBERON:BTO_0000029-FMA_22441
def: "The adductor longus muscle is a muscle of the human body. It is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP]." [Wikipedia:Adductor_longus_muscle]
synonym: "adductor longus muscle" EXACT []
synonym: "long adductor muscle" RELATED [BTO:0000029]
synonym: "musculus adductor longus" RELATED [BTO:0000029]
xref: BTO:0000029
xref: FMA:22441
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: SCTID:181686003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000952 ! adductor muscle
is_a: UBERON:0004252 ! hindlimb stylopod muscle
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0000304
name: tendon sheath
namespace: uberon
alt_id: UBERON:BTO_0000051-FMA_76715
def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [Wikipedia:Tendon_sheath]
comment: TODO: add layer relations
xref: BTO:0000051
xref: FMA:76715
xref: ncithesaurus:Tendon_Sheath
xref: SCTID:361885006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002018 ! synovial membrane
relationship: surrounds UBERON:0000043 ! tendon

[Term]
id: UBERON:0000309
name: body wall
namespace: uberon
alt_id: UBERON:BTO_0000139-FMA_10427
def: "the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385]
synonym: "Koerperwand" RELATED [BTO:0000139]
synonym: "trunk wall" EXACT [FMA:10427]
synonym: "wall of trunk" EXACT [FMA:10427]
xref: BTO:0000139
xref: FMA:10427
xref: galen:BodyWall
xref: SCTID:281483004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0000311
name: extensor muscle
namespace: uberon
alt_id: UBERON:BTO_0000151-FMA_74561
def: "A muscle that, upon contraction, tends to straighten a joint or limb. The antagonist of a flexor muscle[BTO]. Any of the muscles that increase the angle between members of a limb, as by straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus (bone of the upper arm) along the back of the forearm to the metacarpal bones at the back of the hand[Britannica]" [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle]
synonym: "extensor" RELATED []
xref: BTO:0000151
xref: FMA:75000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010962 ! extensor pre-muscle mass
relationship: part_of UBERON:0004708 ! limb/fin

[Term]
id: UBERON:0000312
name: inner cambium layer of periosteum
namespace: uberon
alt_id: UBERON:BTO_0000170-FMA_234358
synonym: "cambial layer" EXACT [FMA:234358]
synonym: "cambial layer of periosteum" EXACT [FMA:234358]
synonym: "cambium" EXACT []
synonym: "cambium layer of periosteum" EXACT [FMA:234358]
synonym: "inner cambial layer of periosteum" EXACT [FMA:234358]
synonym: "osteogenic layer of periosteum" EXACT [Wikipedia:Periosteum]
xref: FMA:234358
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum

[Term]
id: UBERON:0000313
name: tibial cartilage
namespace: uberon
alt_id: UBERON:BTO_0000207-FMA_33923
def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource]
comment: TODO
synonym: "cartilage of tibia" EXACT [FMA:33923]
xref: BTO:0000207
xref: FMA:33923
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004270 ! lower leg connective tissue
is_a: UBERON:0007391 ! pelvic appendage cartilage
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia

[Term]
id: UBERON:0000317
name: colonic mucosa
namespace: uberon
alt_id: UBERON:0003347
alt_id: UBERON:0004981
alt_id: UBERON:BTO_0000271-FMA_14984
def: "A mucosa that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon mucosa" EXACT [FMA:14984]
synonym: "colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "colon mucous membrane" EXACT [OBOL:automatic]
synonym: "colon organ mucosa" EXACT [OBOL:automatic]
synonym: "colonic mucous membrane" EXACT [FMA:14984]
synonym: "large bowel mucosa" EXACT [OBOL:automatic]
synonym: "large bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "large bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "large bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of colon" EXACT [FMA:14984]
synonym: "mucosa of large bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of colon" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large bowel" EXACT [OBOL:automatic]
synonym: "mucosa of segment of colon" EXACT [FMA:85388]
synonym: "mucous membrane of colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of large bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of large bowel" EXACT [OBOL:automatic]
xref: BTO:0000271
xref: EFO:0003038
xref: EMAPA:27375
xref: FMA:14984
xref: FMA:85388
xref: SCTID:362157008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0001207 ! mucosa of large intestine
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001155 ! colon
relationship: part_of UBERON:0001155 ! colon

[Term]
id: UBERON:0000325
name: gastric gland
namespace: uberon
alt_id: UBERON:BTO_0000503-FMA_14919
def: "any of the branched tubules in the inner lining of the stomach that secrete gastric juice and protective mucus." []
subset: grouping_class
subset: organ_slim
xref: BTO:0000503
xref: FMA:14919
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002365 {source="cjm"} ! exocrine gland
is_a: UBERON:0003294 ! gland of foregut
relationship: part_of UBERON:0006924 {source="ISBN10:0073040584"} ! stomach glandular epithelium

[Term]
id: UBERON:0000332
name: yellow bone marrow
namespace: uberon
alt_id: UBERON:BTO_0000635-FMA_74596
synonym: "fat marrow" RELATED [BTO:0000635]
synonym: "medulla ossium flava" RELATED [BTO:0000635]
synonym: "yellow marrow" RELATED [BTO:0000635]
xref: BTO:0000635
xref: FMA:74596
xref: SCTID:5023006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002371 ! bone marrow

[Term]
id: UBERON:0000344
name: mucosa
namespace: uberon
alt_id: UBERON:BTO_0000886-FMA_85355
def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [Wikipedia:Mucous_membrane]
comment: Editor note: - check - mucosa vs region of mucosa. In FMA these are subtypes of Mucosa: Mucosa of gallbladder, tongue, .... The following are subtypes of Region of mucosa: Mucosa of zone of stomach, trachea, bronchus, dorsum of tongue.... Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately
synonym: "mucosa of organ" EXACT [FMA:85355]
synonym: "mucosa of organ part" EXACT [FMA:85358]
synonym: "mucosal region" EXACT [FMA:85358]
synonym: "mucous membrane" EXACT [FMA:85355]
synonym: "organ mucosa" EXACT [FMA:85355]
synonym: "region of mucosa" RELATED [FMA:85358]
synonym: "tunica mucosa" RELATED [BTO:0000886]
xref: AEO:0000199
xref: BTO:0000886
xref: EHDAA2:0003234
xref: EV:0100382
xref: FMA:85355
xref: FMA:85358
xref: GAID:297
xref: galen:Mucosa
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: MESH:A.10.615.550
xref: ncithesaurus:Mucosa
xref: OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA
xref: SCTID:361693009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004923 ! organ component layer

[Term]
id: UBERON:0000361
name: red bone marrow
namespace: uberon
alt_id: UBERON:BTO_0001160-FMA_74595
synonym: "medulla ossium rubra" RELATED [BTO:0001160]
synonym: "red marrow" RELATED [BTO:0001160]
xref: BTO:0001160
xref: FMA:74595
xref: SCTID:75330005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002371 ! bone marrow

[Term]
id: UBERON:0000366
name: flexor muscle
namespace: uberon
alt_id: UBERON:BTO_0001257-FMA_74559
def: "A muscle that when contracted acts to bend a joint or limb in the body." [BTO:0001257]
subset: vertebrate_core
synonym: "flexor" RELATED []
xref: BTO:0001257
xref: FMA:74559
xref: FMA:74999
xref: TAO:0005271
xref: ZFA:0005271
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010977 ! flexor pre-muscle mass
relationship: part_of UBERON:0004708 ! limb/fin

[Term]
id: UBERON:0000368
name: adductor brevis
namespace: uberon
alt_id: UBERON:BTO_0001288-FMA_22442
def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [Wikipedia:Adductor_brevis_muscle]
synonym: "adductor brevis muscle" EXACT []
synonym: "Musculus adductos brevis" EXACT [FMA:22442]
xref: BTO:0001288
xref: FMA:22442
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: OpenCyc:Mx4rv13lfJwpEbGdrcN5Y29ycA
xref: SCTID:181687007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004252 ! hindlimb stylopod muscle
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0000370
name: adductor magnus
namespace: uberon
alt_id: UBERON:BTO_0001312-FMA_22443
def: "The adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP]." [Wikipedia:Adductor_magnus_muscle]
synonym: "adductor magnus muscle" EXACT []
xref: BTO:0001312
xref: FMA:22443
xref: galen:AdductorMagnus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: OpenCyc:Mx4rvuSd6JwpEbGdrcN5Y29ycA
xref: SCTID:181688002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004252 ! hindlimb stylopod muscle
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0000372
name: extensor digitorum brevis
namespace: uberon
alt_id: UBERON:BTO_0001337-FMA_51140
def: "a muscle on the upper surface of the foot that helps extend digits 2 through 4." [Wikipedia:Extensor_digitorum_brevis_muscle]
synonym: "extensor digitorum brevis muscle" EXACT []
xref: BTO:0001337
xref: FMA:51140
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray441.png/200px-Gray441.png
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 {source="BTO"} ! extensor muscle
is_a: UBERON:0001498 ! muscle of foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0000376
name: hindlimb stylopod
namespace: uberon
alt_id: UBERON:BTO_0001376-FMA_24967
def: "In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]." [Wikipedia:Thigh]
comment: Naming conventions for pod terms under discussion within phenoscape group.  TODO - add distinct term for skeleton and place AAO class here
synonym: "fore propodium" EXACT [AAO:0000199]
synonym: "forelimb propodium" EXACT []
synonym: "hind limb stylopod" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "hindlimb stylopodium" EXACT [OBOL:automatic]
synonym: "inferior member stylopod" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "proximal segment of free lower limb" EXACT [FMA:24967]
synonym: "stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb" EXACT []
synonym: "thigh" EXACT []
synonym: "upper leg" EXACT [MA:0000052]
xref: AAO:0000199
xref: BTO:0001376
xref: EFO:0001943
xref: EHDAA2:0002130
xref: EHDAA:5171
xref: EHDAA:6200
xref: EMAPA:17499
xref: FMA:24967
xref: GAID:50
xref: galen:Thigh
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4b/Gray1238.png/200px-Gray1238.png
xref: MA:0000052
xref: MESH:A.01.378.610.750
xref: ncithesaurus:Thigh
xref: OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA
xref: SCTID:302544002
xref: VHOG:0000349
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002472 ! stylopod
is_a: UBERON:0008784 ! lower limb segment
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0000978 {source="MA"} ! leg
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0000377
name: maxillary nerve
namespace: uberon
alt_id: UBERON:BTO_0001378-FMA_52724
def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve]
synonym: "Maxillary division [V2]" EXACT [FMA:52724]
synonym: "Maxillary division [Vb]" EXACT [FMA:52724]
synonym: "Maxillary division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "Maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724]
synonym: "Maxillary nerve [V2]" EXACT [FMA:52724]
synonym: "Maxillary nerve [Vb]" EXACT [FMA:52724]
synonym: "nervus maxillaris" RELATED [BTO:0001378]
synonym: "Nervus maxillaris (Vb; V2)" EXACT [FMA:52724]
synonym: "nervus maxillaris [v2]" EXACT [FMA:52724, FMA:TA]
synonym: "nervus maxillaris [vb]" EXACT [FMA:52724, FMA:TA]
synonym: "Second division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "Second division of trigeminal nerve" EXACT [FMA:52724]
synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103]
xref: BTO:0001378
xref: EHDAA2:0002087
xref: FMA:52724
xref: GAID:836
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png
xref: MA:0001103
xref: MESH:A.08.800.800.120.760.550
xref: OpenCyc:Mx4rvWNU9JwpEbGdrcN5Y29ycA
xref: SCTID:280211001
xref: VHOG:0001346
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: branch_of UBERON:0001645 ! trigeminal nerve

[Term]
id: UBERON:0000378
name: tongue muscle
namespace: uberon
alt_id: UBERON:BTO_0001386-FMA_46689
def: "the muscular portion of the tongue." [MP:0004136, Wikipedia:Muscles_of_tongue]
synonym: "muscle of tongue" EXACT [FMA:46689]
xref: BTO:0001386
xref: FMA:46689
xref: ncithesaurus:Tongue_Muscle
xref: SCTID:244781004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002376 ! muscle of head
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001723 ! tongue
relationship: has_developmental_contribution_from UBERON:0005594 {source="ISBN10:1607950324"} ! head somite
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0000381
name: detrusor
namespace: uberon
alt_id: UBERON:BTO_0001453-FMA_68018
def: "The outer largely longitudinally arranged musculature of the bladder wall[BTO]. The fibers of the detrusor muscle arise from the posterior surface of the body of the pubis in both sexes (musculi pubovesicales), and in the male from the adjacent part of the prostate and its capsule. These fibers pass, in a more or less longitudinal manner, up the inferior surface of the bladder, over its apex, and then descend along its fundus to become attached to the prostate in the male, and to the front of the vagina in the female. At the sides of the bladder the fibers are arranged obliquely and intersect one another[WP]." [BTO:0001453, Wikipedia:Detrusor_urinae_muscle]
synonym: "detrusor muscle" EXACT [BTO:0001453]
synonym: "detrusor muscle of bladder" EXACT [EMAPA:28637]
synonym: "detrusor urinae muscle" EXACT [Wikipedia:Detrusor_urinae_muscle]
synonym: "muscularis propria of the urinary bladder" EXACT [Wikipedia:Detrusor_urinae_muscle]
synonym: "urinary bladder detrussor smooth muscle" RELATED [MA:0001698]
xref: BTO:0001453
xref: EMAPA:28637
xref: FMA:68018
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg
xref: MA:0001698
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004228 ! urinary bladder smooth muscle
relationship: part_of UBERON:0001256 ! wall of urinary bladder

[Term]
id: UBERON:0000383
name: musculature of body
namespace: uberon
alt_id: UBERON:BTO_0001485-FMA_72954
def: "Anatomical system that consists of all the muscles of the body[VAO, modified]." [VAO:0000033]
comment: AO notes: we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA
synonym: "muscle system" EXACT []
synonym: "muscle system of body" EXACT []
synonym: "muscular system" EXACT [FMA:72954]
synonym: "musculature system" EXACT [BILA:0000088]
synonym: "muskelsystem" RELATED [BTO:0001485]
synonym: "set of all muscles" EXACT [FMA:72954]
synonym: "Set of muscles of body" EXACT [FMA:72954]
synonym: "vertebrate muscular system" EXACT [BTO:0001369]
xref: AAO:0000307
xref: BILA:0000088
xref: BTO:0001369
xref: BTO:0001485
xref: EFO:0000801
xref: FBbt:00005069
xref: FMA:72954
xref: MA:0002888
xref: MAT:0000025
xref: MIAA:0000025
xref: VAO:0000033
xref: XAO:0004042
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0002204 ! musculoskeletal system

[Term]
id: UBERON:0000388
name: epiglottis
namespace: uberon
alt_id: UBERON:BTO_0001628-FMA_55130
def: "a flap of elastic cartilage tissue covered with a mucous membrane, attached to the entrance of the larynx. It projects obliquely upwards behind the tongue and the hyoid bone, pointing dorsally." [Wikipedia:Epiglottis]
comment: Editor note: refine definition to better distinguish cartilage from the whole structure
xref: BTO:0001628
xref: EHDAA2:0004081
xref: EMAPA:18289
xref: FMA:55130
xref: GAID:111
xref: MESH:A.02.165.507.411
xref: ncithesaurus:Epiglottis
xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA
xref: SCTID:245502004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003115 {source="EHDAA2"} ! pharyngeal arch 4
relationship: part_of UBERON:0001051 ! hypopharynx

[Term]
id: UBERON:0000392
name: longissimus
namespace: uberon
alt_id: UBERON:BTO_0001648-FMA_77178
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus]
synonym: "musculus longissimus" RELATED [BTO:0001648]
xref: BTO:0001648
xref: FMA:77178
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0000398
name: sternal cartilage
namespace: uberon
alt_id: UBERON:BTO_0001721-FMA_32567
synonym: "cartilage of sternum" EXACT [FMA:32567]
synonym: "cartilago costalis" RELATED [BTO:0001721]
xref: BTO:0001721
xref: FMA:32567
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003837 ! thoracic segment connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000975 ! sternum
relationship: part_of UBERON:0000975 ! sternum

[Term]
id: UBERON:0000401
name: mandibular ramus
namespace: uberon
alt_id: UBERON:BTO_0001751-FMA_52828
def: "The ramus of the mandible (perpendicular portion) is quadrilateral in shape, and has two surfaces, four borders, and two processes[WP]." [Wikipedia:Ramus_of_the_mandible]
synonym: "lower ramus" RELATED [Wikipedia:Ramus_of_the_mandible]
synonym: "mandible ramus" EXACT [MA:0002815]
synonym: "rami mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible]
synonym: "ramus mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible]
synonym: "ramus of mandible" EXACT [FMA:52828]
xref: BTO:0001751
xref: EMAPA:25100
xref: FMA:52828
xref: MA:0002815
xref: SCTID:361739000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 ! mandible

[Term]
id: UBERON:0000402
name: nasal vestibule
namespace: uberon
alt_id: UBERON:BTO_0001761-FMA_59644
def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule]
synonym: "vestibular part of nasal cavity" EXACT [FMA:59644]
synonym: "vestibulum nasale" RELATED [BTO:0001761]
synonym: "vestibulum nasi" RELATED [BTO:0001761]
xref: BTO:0001761
xref: FMA:59644
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray994.png/200px-Gray994.png
xref: SCTID:278940000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001707 ! nasal cavity

[Term]
id: UBERON:0000403
name: scalp
namespace: uberon
alt_id: UBERON:BTO_0001809-FMA_46494
def: "The scalp is the anatomical area bordered by the face anteriorly and the neck to the sides and posteriorly. [WP,unvetted]." [Wikipedia:Scalp]
xref: BTO:0001809
xref: FMA:46494
xref: GAID:80
xref: galen:Scalp
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Double_cowlick.jpg/200px-Double_cowlick.jpg
xref: MESH:A.01.456.810
xref: ncithesaurus:Scalp
xref: OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA
xref: SCTID:181480002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster

[Term]
id: UBERON:0000415
name: artery wall
namespace: uberon
alt_id: UBERON:BTO_0002009-FMA_14155
def: "An anatomical wall that is part of an artery [Obol]." [OBOL:automatic]
synonym: "Arterial wall" EXACT [FMA:14155]
synonym: "wall of artery" EXACT [FMA:14155]
xref: BTO:0002009
xref: FMA:14155
xref: galen:ArterialWall
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery

[Term]
id: UBERON:0000440
name: trabecula
namespace: uberon
alt_id: UBERON:BTO_0002501-FMA_85273
def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, Wikipedia:Trabecula]
subset: grouping_class
xref: BTO:0002501
xref: FMA:85273
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part

[Term]
id: UBERON:0000456
name: bodily secretion
namespace: uberon
alt_id: UBERON:0006540
alt_id: UBERON:BTO_0002979-FMA_9675
def: "Body substance in a liquid or semisolid state produced by an exocrine gland. Example: saliva, sebum, blood, plasma, semen, urine." [FMA:9675]
comment: AO notes: BTO has two distunct classes, with exocrine glandular secretion a subtype of secretion - however, all examples in BTO directly under secretion appear to be exocrine gland secretions
synonym: "exocrine gland fluid" RELATED []
synonym: "exocrine gland fluid or secretion" RELATED []
synonym: "exocrine gland fluid/secretion" EXACT [MA:0002504]
synonym: "exocrine gland secretion" RELATED []
synonym: "external secretion" RELATED [BTO:0002977]
synonym: "secreted substance" EXACT []
synonym: "secretion" EXACT [FMA:9675]
xref: BTO:0002977
xref: BTO:0002979
xref: FMA:9675
xref: galen:Secretion
xref: MA:0002504
xref: MESH:A.12.200
xref: ncithesaurus:Exocrine_Gland_Fluid_or_Secretion
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000463 ! portion of organism substance
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0002365 ! exocrine gland
relationship: secreted_by UBERON:0002365 ! exocrine gland

[Term]
id: UBERON:0000463
name: portion of organism substance
namespace: uberon
alt_id: UBERON:CARO_0000004-FBbt_00007019
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH]
subset: upper_level
synonym: "body fluid or substance" EXACT [MA:0002450]
synonym: "body substance" EXACT [FMA:9669]
synonym: "organism substance" EXACT []
synonym: "portion of body substance" EXACT [FMA:9669]
xref: AAO:0010839
xref: AEO:0000004
xref: BILA:0000004
xref: CARO:0000004
xref: EHDAA2:0003004
xref: FBbt:00007019
xref: FMA:9669
xref: galen:BodySubstance
xref: HAO:0000004
xref: MA:0002450
xref: ncithesaurus:Body_Fluid_or_Substance
xref: SPD:0000008
xref: TAO:0001487
xref: TGMA:0001824
xref: XAO:0004001
xref: ZFA:0001487
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000465 ! material anatomical entity
relationship: part_of UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0000464
name: anatomical space
namespace: uberon
alt_id: UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643
def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH]
subset: upper_level
xref: AAO:0010110
xref: AEO:0000005
xref: BILA:0000005
xref: CARO:0000005
xref: EHDAA2:0003005
xref: FBbt:00007017
xref: FMA:5897
xref: HAO:0000005
xref: TAO:0001668
xref: TGMA:0001825
xref: XAO:0003190
xref: ZFA:0001643
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000466 ! immaterial anatomical entity
disjoint_from: UBERON:0006800 ! anatomical line
relationship: surrounded_by UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0000465
name: material anatomical entity
namespace: uberon
alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487
def: "Anatomical entity that has mass." [CARO:MAH]
subset: upper_level
xref: AAO:0010264
xref: AEO:0000006
xref: BILA:0000006
xref: CARO:0000006
xref: EHDAA2:0003006
xref: FBbt:00007016
xref: FMA:67165
xref: HAO:0000006
xref: TAO:0001836
xref: TGMA:0001826
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001062 ! anatomical entity

[Term]
id: UBERON:0000466
name: immaterial anatomical entity
namespace: uberon
alt_id: UBERON:CARO_0000007-FBbt_00007015
def: "Anatomical entity that has no mass." [CARO:MAH]
subset: disjointness_axiom_removed
subset: upper_level
synonym: "immaterial physical anatomical entity" EXACT [FMA:67112]
xref: AAO:0010265
xref: AEO:0000007
xref: BILA:0000007
xref: CARO:0000007
xref: EHDAA2:0003007
xref: FBbt:00007015
xref: FMA:67112
xref: HAO:0000007
xref: TGMA:0001827
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001062 ! anatomical entity

[Term]
id: UBERON:0000467
name: anatomical system
namespace: uberon
alt_id: UBERON:CARO_0000011-XAO_0003002-ZFA_0001439
alt_id: UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176
def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system]
subset: uberon_slim
subset: upper_level
synonym: "body system" EXACT [NIF_GrossAnatomy:birnlex_14]
synonym: "organ system" EXACT []
synonym: "system" BROAD [GO:0048731]
xref: AAO:0000007
xref: AEO:0000011
xref: BILA:0000011
xref: CARO:0000011
xref: EHDAA2:0001330
xref: EHDAA2:0003011
xref: EHDAA:392
xref: EMAPA:16103
xref: EV:0100000
xref: FBbt:00004856
xref: FMA:7149
xref: galen:AnatomicalSystem
xref: HAO:0000011
xref: MA:0000003
xref: ncithesaurus:Organ_System
xref: NIF_GrossAnatomy:birnlex_14
xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ
xref: SCTID:278195005
xref: TAO:0001439
xref: TGMA:0001831
xref: WBbt:0005746
xref: XAO:0003002
xref: ZFA:0001439
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000480 ! anatomical group
relationship: part_of UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0000468
name: multi-cellular organism
namespace: uberon
alt_id: UBERON:CARO_0000012-XAO_0003004
def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism]
comment: TODO - split body and mc organism? body continues after death stage
subset: uberon_slim
subset: upper_level
synonym: "adult mouse" EXACT [MA:0002405]
synonym: "body" EXACT []
synonym: "Koerper" RELATED [BTO:0001489]
synonym: "organism" EXACT []
synonym: "TS28" RELATED [MA:0002405]
synonym: "whole body" EXACT [BTO:0001489]
synonym: "whole organism" EXACT []
xref: AAO:0010026
xref: AEO:0000103
xref: AEO:0000191
xref: BILA:0000012
xref: BTO:0001489
xref: CARO:0000012
xref: EFO:0002906
xref: EHDAA2:0003103
xref: EHDAA2:0003191
xref: EHDAA:1
xref: EHDAA:9178
xref: EMAPA:25765
xref: EV:0100016
xref: FBbt:00000001
xref: FMA:256135
xref: galen:Organism
xref: HAO:0000012
xref: MA:0002405
xref: ncithesaurus:Whole_Organism
xref: NIF_GrossAnatomy:birnlex_18
xref: TADS:0000001
xref: TAO:0001094
xref: TGMA:0001832
xref: VHOG:0000671
xref: WBbt:0007833
xref: XAO:0003004
xref: ZFA:0001094
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0000473
name: testis
namespace: uberon
alt_id: UBERON:0002117
alt_id: UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598
def: "gonad of a male animal, produces and releases sperm." [Wikipedia:Testis]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "genitalia of male organism gonad" EXACT [OBOL:automatic]
synonym: "genitalia of male organism gonada" EXACT [OBOL:automatic]
synonym: "gonad of genitalia of male organism" EXACT [OBOL:automatic]
synonym: "gonad of male genitalia" EXACT [OBOL:automatic]
synonym: "gonad of male genitals" EXACT [OBOL:automatic]
synonym: "gonad of male organism genitalia" EXACT [OBOL:automatic]
synonym: "gonad of male organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of male reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "gonada of genitalia of male organism" EXACT [OBOL:automatic]
synonym: "gonada of male genitalia" EXACT [OBOL:automatic]
synonym: "gonada of male genitals" EXACT [OBOL:automatic]
synonym: "gonada of male organism genitalia" EXACT [OBOL:automatic]
synonym: "gonada of male organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of male reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "male genitalia gonad" EXACT [OBOL:automatic]
synonym: "male genitalia gonada" EXACT [OBOL:automatic]
synonym: "male genitals gonad" EXACT [OBOL:automatic]
synonym: "male gonad" EXACT [OBOL:automatic]
synonym: "male organism genitalia gonad" EXACT [OBOL:automatic]
synonym: "male organism genitalia gonada" EXACT [OBOL:automatic]
synonym: "male organism reproductive system gonad" EXACT [OBOL:automatic]
synonym: "male organism reproductive system gonada" EXACT [OBOL:automatic]
synonym: "male reproductive system gonad" EXACT [OBOL:automatic]
synonym: "male reproductive system gonada" EXACT [OBOL:automatic]
synonym: "orchis" RELATED [BTO:0001363]
synonym: "reproductive system of male organism gonad" EXACT [OBOL:automatic]
synonym: "reproductive system of male organism gonada" EXACT [OBOL:automatic]
synonym: "testes" RELATED PLURAL []
synonym: "testicle" EXACT [FMA:7210]
synonym: "testiculus" RELATED [BTO:0001363]
xref: AAO:0000606
xref: BILA:0000124
xref: BTO:0001363
xref: EFO:0000984
xref: EHDAA2:0002007
xref: EHDAA:8146
xref: EMAPA:17972
xref: EV:0100102
xref: FBbt:00004928
xref: FMA:7210
xref: GAID:396
xref: galen:Testis
xref: HAO:0001007
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Gray1144.png/200px-Gray1144.png
xref: MA:0000411
xref: MAT:0000132
xref: MESH:A.05.360.444.849
xref: MIAA:0000132
xref: ncithesaurus:Testis
xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
xref: SCTID:181431007
xref: TAO:0000598
xref: VHOG:0000252
xref: WBbt:0006794
xref: XAO:0000157
xref: ZFA:0000598
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000991 ! gonad
is_a: UBERON:0003135 ! male reproductive organ
intersection_of: UBERON:0000991 ! gonad
intersection_of: part_of UBERON:0000079 ! male reproductive system
disjoint_from: UBERON:0000992 ! female gonad
disjoint_from: UBERON:0009117 ! indifferent gonad
relationship: develops_from UBERON:0009117 ! indifferent gonad
relationship: part_of UBERON:0000079 ! male reproductive system

[Term]
id: UBERON:0000474
name: female reproductive system
namespace: uberon
alt_id: UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303
def: "The organs of the female reproductive system." [Wikipedia:Female_genitalia]
subset: uberon_slim
synonym: "female genital system" RELATED []
synonym: "female genitalia" RELATED []
synonym: "female organism genitalia" EXACT [OBOL:automatic]
synonym: "female organism reproductive system" EXACT [OBOL:automatic]
synonym: "female reproductive tract" RELATED [MA:0000381]
synonym: "genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gynaecological tissue" RELATED [BTO:0000083]
synonym: "reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "systema genitale femininum" RELATED [BTO:0000083]
xref: BTO:0000083
xref: EFO:0000969
xref: EHDAA2:0000506
xref: EHDAA:8116
xref: EMAPA:17959
xref: EV:0100110
xref: FBbt:00004864
xref: FMA:45663
xref: GAID:364
xref: HAO:0000324
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png
xref: MA:0000381
xref: MESH:A.05.360.319
xref: MIAA:0000028
xref: ncithesaurus:Female_Reproductive_System
xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA
xref: TGMA:0000635
xref: VHOG:0000726
xref: WBbt:0006748
xref: XAO:0000156
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000990 ! reproductive system
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0003100 ! female organism

[Term]
id: UBERON:0000475
name: organism subdivision
namespace: uberon
alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308
def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part]
comment: Editor note: revise after CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency
subset: uberon_slim
subset: upper_level
synonym: "body part" RELATED []
synonym: "body region" RELATED [FMA:7153]
synonym: "cardinal body part" RELATED [FMA:7153]
xref: AAO:0010053
xref: AEO:0000032
xref: BILA:0000032
xref: CARO:0000032
xref: EFO:0000808
xref: EHDAA2:0003032
xref: FBbt:00007009
xref: FMA:7153
xref: galen:BodyPart
xref: HAO:0000032
xref: MA:0002433
xref: MAT:0000293
xref: MESH:A.01
xref: MIAA:0000293
xref: ncithesaurus:Body_Part
xref: OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA
xref: TAO:0001308
xref: TGMA:0001840
xref: XAO:0003013
xref: ZFA:0001308
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0000476
name: acellular anatomical structure
namespace: uberon
alt_id: UBERON:CARO_0000040-FBbt_00007013-FMA_63863-ZFA_0000382
def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH]
subset: vertebrate_core
xref: AAO:0010268
xref: AEO:0000040
xref: BILA:0000040
xref: CARO:0000040
xref: EHDAA2:0003040
xref: FBbt:00007013
xref: FMA:63863
xref: HAO:0000040
xref: TAO:0000382
xref: TGMA:0001841
xref: XAO:0003162
xref: ZFA:0000382
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
disjoint_from: UBERON:0000480 ! anatomical group

[Term]
id: UBERON:0000477
name: anatomical cluster
namespace: uberon
alt_id: UBERON:CARO_0000041-FMA_49443-ZFA_0001478
def: "Anatomical group that has its parts adjacent to one another." [CARO:MAH]
subset: disjointness_axiom_removed
subset: upper_level
xref: AAO:0010009
xref: AEO:0000041
xref: BILA:0000041
xref: CARO:0000041
xref: EHDAA2:0003041
xref: FBbt:00007277
xref: FMA:49443
xref: HAO:0000041
xref: TADS:0000605
xref: TAO:0001478
xref: TGMA:0001842
xref: XAO:0003160
xref: ZFA:0001478
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000480 ! anatomical group

[Term]
id: UBERON:0000479
name: tissue
namespace: uberon
alt_id: UBERON:CARO_0000043-FBbt_00007003-XAO_0003040-ZFA_0001477
def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, FMA:9637]
comment: This class was sourced from CARO, which was initially sourced from FMA. Nomenclature changes have been made. Note also AEO introduces a class AEO:0000013 'single-cell tissue'
subset: upper_level
synonym: "portion of tissue" EXACT [CARO:0000043]
synonym: "simple tissue" EXACT [AEO:0000043]
synonym: "tissue portion" EXACT []
xref: AAO:0000607
xref: AAO:0010054
xref: AEO:0000043
xref: BILA:0000043
xref: CARO:0000043
xref: EHDAA2:0003043
xref: FBbt:00007003
xref: FMA:9637
xref: galen:Tissue
xref: HAO:0000043
xref: MA:0003002
xref: MESH:A.10
xref: ncithesaurus:Tissue
xref: NIF_GrossAnatomy:birnlex_19
xref: TAO:0001477
xref: TGMA:0001844
xref: WBbt:0005729
xref: XAO:0003040
xref: ZFA:0001477
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0000480
name: anatomical group
namespace: uberon
alt_id: UBERON:CARO_0000054-XAO_0003001-ZFA_0001512
def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH]
subset: upper_level
xref: AAO:0010008
xref: AEO:0000054
xref: BILA:0000054
xref: CARO:0000054
xref: EHDAA2:0003054
xref: HAO:0000054
xref: TAO:0001512
xref: TGMA:0001846
xref: XAO:0003001
xref: ZFA:0001512
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0000481
name: multi-tissue structure
namespace: uberon
alt_id: UBERON:CARO_0000055-FBbt_00007010-XAO_0003037-ZFA_0001488
def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, CARO:MAH]
subset: upper_level
xref: AAO:0010048
xref: AEO:0000055
xref: BILA:0000055
xref: CARO:0000055
xref: EHDAA2:0003055
xref: FBbt:00007010
xref: HAO:0000055
xref: TAO:0001488
xref: TGMA:0001847
xref: XAO:0003037
xref: ZFA:0001488
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0000479 ! tissue

[Term]
id: UBERON:0000483
name: epithelium
namespace: uberon
alt_id: UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486
def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelial tissue" EXACT []
synonym: "portion of epithelium" EXACT [FMA:9639]
xref: AAO:0000144
xref: AAO:0010055
xref: AEO:0000066
xref: BILA:0000066
xref: BTO:0000416
xref: CARO:0000066
xref: EHDAA2:0003066
xref: FBbt:00007005
xref: FMA:9639
xref: GAID:402
xref: HAO:0000066
xref: MESH:A.10.272
xref: ncithesaurus:Epithelium
xref: SCTID:31610004
xref: TAO:0001486
xref: VHOG:0000387
xref: XAO:0003045
xref: ZFA:0001486
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000119 ! cell layer

[Term]
id: UBERON:0000485
name: simple columnar epithelium
namespace: uberon
alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496
def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Simple_columnar_epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "columnar epithelium" EXACT [EHDAA2:0003068]
synonym: "columnar epithlium" EXACT [AEO:0000068]
synonym: "epithelium simplex columnare" EXACT []
synonym: "simple columnar epithelium" EXACT []
xref: AAO:0010063
xref: AEO:0000068
xref: BILA:0000068
xref: CARO:0000068
xref: EHDAA2:0003068
xref: FBbt:00007027
xref: FMA:45567
xref: HAO:0000068
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray1059.png/200px-Gray1059.png
xref: ncithesaurus:Simple_Columnar_Epithelium
xref: TAO:0001496
xref: XAO:0004008
xref: ZFA:0001496
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 ! unilaminar epithelium

[Term]
id: UBERON:0000486
name: multilaminar epithelium
namespace: uberon
alt_id: UBERON:CARO_0000069-FMA_45562-ZFA_0001494
def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Stratified_epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "laminated epithelium" RELATED [BTO:0002074]
synonym: "stratified epithelium" EXACT []
xref: AAO:0010059
xref: AEO:0000069
xref: BILA:0000069
xref: BTO:0002074
xref: CARO:0000069
xref: EHDAA2:0003069
xref: FMA:45562
xref: HAO:0000069
xref: ncithesaurus:Stratified_Epithelium
xref: SCTID:309044005
xref: TAO:0001494
xref: XAO:0004006
xref: ZFA:0001494
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium

[Term]
id: UBERON:0000487
name: simple squamous epithelium
namespace: uberon
alt_id: UBERON:CARO_0000070-FMA_45565-ZFA_0001498
def: "Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA]" [CARO:MAH, FMA:45565, Wikipedia:Simple_squamous_epithelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelium simplex squamosum" EXACT []
xref: AAO:0010066
xref: AEO:0000070
xref: BILA:0000070
xref: BTO:0002073
xref: CARO:0000070
xref: EHDAA2:0003070
xref: FMA:45565
xref: HAO:0000070
xref: ncithesaurus:Simple_Squamous_Epithelium
xref: TAO:0001498
xref: XAO:0004010
xref: ZFA:0001498
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0006914 ! squamous epithelium

[Term]
id: UBERON:0000489
name: cavitated compound organ
namespace: uberon
alt_id: UBERON:CARO_0000072-ZFA_0001490
def: "Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH]
subset: organ_slim
subset: upper_level
xref: AAO:0010016
xref: AEO:0000072
xref: BILA:0000072
xref: CARO:0000072
xref: EHDAA2:0003072
xref: HAO:0000072
xref: TAO:0001490
xref: TGMA:0001857
xref: XAO:0003165
xref: ZFA:0001490
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003103 ! compound organ
intersection_of: UBERON:0003103 ! compound organ
intersection_of: has_part UBERON:0002553 ! anatomical cavity
relationship: has_part UBERON:0002553 ! anatomical cavity

[Term]
id: UBERON:0000490
name: unilaminar epithelium
namespace: uberon
alt_id: UBERON:CARO_0000073-FMA_45561-ZFA_0001495
def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]" [CARO:MAH, FMA:45561]
subset: vertebrate_core
synonym: "simple epithelium" EXACT []
xref: AAO:0010062
xref: AEO:0000073
xref: BILA:0000073
xref: BTO:0002073
xref: CARO:0000073
xref: EHDAA2:0003073
xref: FMA:45561
xref: HAO:0000073
xref: ncithesaurus:Simple_Epithelium
xref: SCTID:309043004
xref: TAO:0001495
xref: XAO:0004007
xref: ZFA:0001495
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium

[Term]
id: UBERON:0000569
name: ileocecal valve
namespace: uberon
def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [Wikipedia:Ileocecal_valve]
synonym: "Tulp's valve" RELATED [Wikipedia:Ileocecal_valve]
synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973]
xref: FMA:15973
xref: galen:IleocecalValve
xref: ncithesaurus:Ileocecal_Valve
xref: SCTID:362153007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003978 {source="Obol"} ! valve
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004590 {source="Wikipedia"} ! sphincter muscle
relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction

[Term]
id: UBERON:0000711
name: splenius capitis
namespace: uberon
def: "The splenius capitis is a broad, straplike muscle in the back of the neck. It pulls on the base of the skull from vertebrae in the neck and upper thorax. It arises from the lower half of the ligamentum nuchæ, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebræ. The fibers of the muscle are directed upward and lateralward and are inserted, under cover of the Sternocleidomastoideus, into the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line. The Splenius Capitis muscle is innervated by the dorsal rami of spinal nerves C3-C4. The splenius muscle is a prime mover for head extension. The splenius capitis can also allow lateral flexion and rotation of the cervical spine." [Wikipedia:Splenius_capitis_muscle]
synonym: "splenius capitis muscle" EXACT [Wikipedia:Splenius_capitis_muscle]
xref: FMA:22653
xref: SCTID:244850004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002252 {source="FMA"} ! splenius

[Term]
id: UBERON:0000913
name: interstitial fluid
namespace: uberon
alt_id: UBERON:ENVO_02000042-FMA_9673
def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [FMA:9673, Wikipedia:Interstitial_fluid]
synonym: "intercellular fluid" EXACT [ENVO:02000042]
synonym: "tissue fluid" EXACT [ENVO:02000042]
xref: ENVO:02000042
xref: FMA:9673
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000463 ! portion of organism substance

[Term]
id: UBERON:0000915
name: thoracic segment of trunk
namespace: uberon
alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
def: "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
comment: todo - taxonomic constraints. Originally this was defined loosely to include insect thorax but the value of such a high-level grouping class is dubious. Note that FMA distinsguishes between thorax and thoracic region of trunk
subset: uberon_slim
synonym: "thorax" RELATED [MA:0000022]
synonym: "upper body" RELATED []
xref: FMA:259209
xref: MA:0000022
xref: SCTID:302551006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0000026
property_value: "spatially_disjoint_from" UBERON:0000033
property_value: "spatially_disjoint_from" UBERON:0002417
is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk

[Term]
id: UBERON:0000916
name: abdomen
namespace: uberon
alt_id: UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298
def: "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen]
comment: Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class
subset: uberon_slim
synonym: "abdominopelvic region" EXACT [FMA:9577]
synonym: "abdominopelvis" EXACT [FMA:9577]
synonym: "adult abdomen" RELATED []
synonym: "belly" RELATED []
xref: BTO:0000020
xref: EFO:0000968
xref: EV:0100011
xref: FMA:9577
xref: GAID:16
xref: galen:Abdomen
xref: MA:0000029
xref: MAT:0000298
xref: MESH:A.01.047
xref: MIAA:0000298
xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA
xref: SCTID:302553009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009569 ! subdivision of trunk
relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk

[Term]
id: UBERON:0000922
name: embryo
namespace: uberon
alt_id: UBERON:FBbt_00000052-FMA_69068-MIAA_0000019-XAO_0000113
def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo]
comment: Obsoleted in ZFA. Note that embryo is not classified as an embryonic structure - an embryonic structure is only the parts of an embryo
subset: uberon_slim
subset: vertebrate_core
synonym: "developing organism" RELATED [BILA:0000056]
synonym: "developmental tissue" RELATED []
synonym: "embryonic organism" EXACT [BILA:0000056]
xref: AAO:0011035
xref: AEO:0000169
xref: BILA:0000056
xref: BTO:0000379
xref: EFO:0001367
xref: EHDAA2:0003236
xref: EHDAA:38
xref: EMAPA:16039
xref: FBbt:00000052
xref: FMA:69068
xref: GAID:963
xref: MAT:0000226
xref: MESH:A.16.254
xref: MIAA:0000019
xref: ncithesaurus:Embryo
xref: OGEM:000001
xref: OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA
xref: SCTID:57991002
xref: XAO:0000113
xref: ZFA:0000103
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000468 ! multi-cellular organism
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_ends_with UBERON:0000068 ! embryo stage
intersection_of: existence_starts_with UBERON:0000068 ! embryo stage
relationship: existence_ends_with UBERON:0000068 ! embryo stage
relationship: existence_starts_with UBERON:0000068 ! embryo stage

[Term]
id: UBERON:0000923
name: germ layer
namespace: uberon
alt_id: UBERON:FBbt_00000110-FMA_69069
alt_id: UBERON:XAO_0003011-ZFA_0001122
def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer]
comment: Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[UBERONREF:0000002]
subset: uberon_slim
subset: vertebrate_core
synonym: "embryonic germ layer" RELATED []
synonym: "embryonic germ layers" RELATED []
synonym: "embryonic tissue" BROAD [FMA:69069]
synonym: "germinal layer" EXACT [ncithesaurus:Germinal_Layer]
synonym: "primary germ layer" NARROW [GO:0001704, ZFA:0001122]
xref: AAO:0000480
xref: BILA:0000035
xref: BTO:0000556
xref: FBbt:00000110
xref: FMA:69069
xref: GAID:1303
xref: MESH:A.16.254.425
xref: ncithesaurus:Embryonic_Tissue
xref: ncithesaurus:Germinal_Layer
xref: TAO:0001122
xref: VHOG:0001223
xref: XAO:0003011
xref: ZFA:0001122
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010316 ! germ layer / neural crest
relationship: develops_from UBERON:0002532 ! epiblast
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0000924
name: ectoderm
namespace: uberon
alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
subset: uberon_slim
subset: vertebrate_core
synonym: "embryonic ectoderm" EXACT [VHOG:0000153]
xref: AAO:0000137
xref: BILA:0000036
xref: BTO:0000315
xref: EFO:0000414
xref: EHDAA2:0000428
xref: EMAPA:16069
xref: EV:0100003
xref: FBbt:00000111
xref: FMA:69070
xref: GAID:1304
xref: MAT:0000155
xref: MAT:0000173
xref: MESH:A.16.254.425.273
xref: MIAA:0000173
xref: ncithesaurus:Ectoderm
xref: SCTID:362851007
xref: TAO:0000016
xref: VHOG:0000153
xref: XAO:0000001
xref: ZFA:0000016
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000923 ! germ layer
relationship: develops_from UBERON:0006601 {source="cjm"} ! presumptive ectoderm

[Term]
id: UBERON:0000925
name: endoderm
namespace: uberon
alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017
def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "entoderm" RELATED []
xref: AAO:0000139
xref: BILA:0000038
xref: BTO:0000800
xref: EFO:0002545
xref: EHDAA2:0000436
xref: EV:0100005
xref: FBbt:00000125
xref: FMA:69071
xref: GAID:1305
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray10.png/200px-Gray10.png
xref: MAT:0000175
xref: MESH:A.16.254.425.407
xref: MIAA:0000175
xref: ncithesaurus:Endoderm
xref: SCTID:362855003
xref: TAO:0000017
xref: VHOG:0000154
xref: XAO:0000090
xref: ZFA:0000017
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000923 ! germ layer
relationship: develops_from UBERON:0006595 {source="ZFA"} ! presumptive endoderm

[Term]
id: UBERON:0000926
name: mesoderm
namespace: uberon
alt_id: UBERON:0003263
alt_id: UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041
def: "The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm]
comment: Taxon notes: sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[http://www.nature.com/nature/journal/v466/n7307/full/nature09201.html]. Mesoderm may not be homologous across verteberates[UBERONREF:0000002]
subset: uberon_slim
subset: vertebrate_core
synonym: "entire mesoderm" RELATED [SCTID:362854004, UBERON:cjm]
synonym: "mesodermal mantle" RELATED []
xref: AAO:0000304
xref: BILA:0000037
xref: BTO:0000839
xref: EFO:0001981
xref: EHDAA2:0001128
xref: EHDAA:124
xref: EHDAA:140
xref: EHDAA:154
xref: EHDAA:160
xref: EHDAA:168
xref: EHDAA:183
xref: EMAPA:16083
xref: EV:0100006
xref: FBbt:00000126
xref: FMA:69072
xref: GAID:522
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Mesoderm.png/200px-Mesoderm.png
xref: MAT:0000174
xref: MESH:A.16.254.425.660
xref: MIAA:0000174
xref: ncithesaurus:Mesoderm
xref: SCTID:362854004
xref: TAO:0000041
xref: VHOG:0000152
xref: XAO:0000050
xref: ZFA:0000041
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000923 {notes="sometimes not considered primary"} ! germ layer
relationship: develops_from UBERON:0006603 {source="ZFA"} ! presumptive mesoderm

[Term]
id: UBERON:0000930
name: stomodeum
namespace: uberon
alt_id: UBERON:FBbt_00000439-ZFA_0001290
def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth[ZFA]. In humans, a depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland. The stomodeum is lined by ectoderm, and is separated from the anterior end of the fore-gut by the buccopharyngeal membrane. This membrane is devoid of mesoderm, being formed by the apposition of the stomodeal ectoderm with the fore-gut endoderm; at the end of the third week it disappears, and thus a communication is established between the mouth and the future pharynx[WP]. The anterior part of the embryonic digestive system deriving from the stomodeal invagination of the ectoderm[FBbt]." [Wikipedia:Stomodeum]
comment: Editor note: consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence. Taxon note: This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity.
subset: grouping_class
subset: uberon_slim
subset: vertebrate_core
synonym: "mouth primordium" EXACT [XAO:0000269]
synonym: "primitive oral cavity" EXACT [UBERON:cjm]
synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum]
synonym: "stomodaeum" EXACT []
xref: BTO:0004224
xref: EHDAA2:0001929
xref: EMAPA:16263
xref: FBbt:00000439
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray977.png/200px-Gray977.png
xref: ncithesaurus:Stomodeum
xref: TAO:0001290
xref: TGMA:0000135
xref: XAO:0000269
xref: ZFA:0001290
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003102 {source="ZFA"} ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0007026 ! primitive gut

[Term]
id: UBERON:0000931
name: proctodeum
namespace: uberon
alt_id: UBERON:FBbt_00000440-WBbt_0006795
def: "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage[ZFA]. A proctodeum is the back ectodermal part of an alimentary canal. It is created during embryogenesis by a folding of the outer body wall[WP]." [Wikipedia:Proctodeum]
comment: removed WBbt:0006795 - junction between the alimentary and genital tracts in the male.
subset: uberon_slim
synonym: "proctodaeum" EXACT []
xref: AAO:0011087
xref: FBbt:00000440
xref: ncithesaurus:Proctodeum
xref: SCTID:298233001
xref: TAO:0000066
xref: VHOG:0000139
xref: XAO:0001019
xref: ZFA:0000066
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_into UBERON:0001353 ! anal region
relationship: part_of UBERON:0007026 ! primitive gut

[Term]
id: UBERON:0000933
name: pharyngeal muscle
namespace: uberon
alt_id: UBERON:FBbt_00000487-FMA_46619-MA_0001797
def: "A muscle that forms part of the pharynx." [GO:0043282]
comment: todo - add asserted children and check logical definition against these; e.g. is stylopharyngeus part of the pharynx?
synonym: "muscle of pharynx" EXACT []
synonym: "muscle organ of pharynx" EXACT [OBOL:automatic]
synonym: "musculus pharyngis" RELATED [BTO:0001048]
synonym: "pharynx muscle" EXACT []
synonym: "pharynx muscle organ" EXACT [OBOL:automatic]
xref: BTO:0001048
xref: FMA:46619
xref: GAID:154
xref: MA:0001797
xref: MESH:A.02.633.567.800
xref: ncithesaurus:Pharyngeal_Muscle
xref: SCTID:244798004
xref: TAO:0000172
xref: ZFA:0000172
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0006562 ! pharynx
relationship: part_of UBERON:0004467 ! musculature of pharynx
relationship: part_of UBERON:0006562 ! pharynx

[Term]
id: UBERON:0000945
name: stomach
namespace: uberon
alt_id: UBERON:FBbt_00003138-FMA_7148-MA_0000353-MIAA_0000051-XAO_0000128
def: "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium." [ISBN10:0073040584, UBERON:cjm, Wikipedia:Stomach]
comment: Taxon notes: We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa -- Stomach#In_other_animals
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior intestine" RELATED []
synonym: "gaster" RELATED [BTO:0001307]
synonym: "mesenteron" RELATED []
synonym: "stomach" RELATED []
synonym: "ventriculus" RELATED []
xref: AAO:0000579
xref: ANISEED:1235297
xref: BTO:0001307
xref: EFO:0000837
xref: EHDAA2:0001915
xref: EHDAA:2993
xref: EMAPA:17021
xref: EMAPA:18889
xref: EV:0100070
xref: FMA:7148
xref: GAID:293
xref: galen:Stomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Stomach_diagram.svg/200px-Stomach_diagram.svg.png
xref: MA:0000353
xref: MAT:0000051
xref: MESH:A.03.492.766
xref: MIAA:0000051
xref: ncithesaurus:Stomach
xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA
xref: SCTID:181246003
xref: TAO:0002121
xref: VHOG:0000408
xref: XAO:0000128
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010039 ! food storage organ
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0000946
name: cardial valve
namespace: uberon
alt_id: UBERON:FBbt_00003140-FMA_7110-MA_0000086-ZFA_0005065
def: "Flap of tissue that prevents regurgitation of blood from the ventricles to the atria or from the pulmonary arteries or aorta to the ventricles." [Wikipedia:Cardiac_valve]
comment: Terminology notes: Rector et al: One might be tempted to define “heart valve” equivalently to “valve in the heart”, and “valve” as a “structure which functions as a valve”. But this combination results in the “foramen ovale” being classified as a kind of “heart valve”, since it is undoubtedly located in the heart and functions as a valve
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac valve" RELATED []
synonym: "heart valve" EXACT []
synonym: "heart valves" RELATED []
synonym: "stomodaeal valve" RELATED []
synonym: "valve of heart" EXACT []
xref: BTO:0000564
xref: EMAPA:17869
xref: EV:0100024
xref: FMA:7110
xref: GAID:176
xref: galen:HeartValve
xref: MA:0000086
xref: MESH:A.07.541.510
xref: ncithesaurus:Cardiac_Valve
xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA
xref: SCTID:181285005
xref: TAO:0005065
xref: VHOG:0000818
xref: XAO:0004126
xref: ZFA:0005065
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003978 ! valve
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
disjoint_from: UBERON:0004754 ! foramen ovale of heart
relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0000947
name: aorta
namespace: uberon
alt_id: UBERON:FBbt_00003153-FMA_3734-MA_0000062-MA_0000476-MIAA_0000035-XAO_0003010-ZFA_0000014
def: "Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [Wikipedia:Aorta]
comment: Editor notes: This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae. Taxon notes: All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches[WP].
subset: grouping_class
subset: uberon_slim
synonym: "dorsal aorta" NARROW SENSU [Wikipedia:Aorta#In_other_animals, ZFA:0000014]
synonym: "trunk of aortic tree" EXACT []
synonym: "trunk of systemic arterial tree" EXACT []
xref: AAO:0010213
xref: BTO:0000135
xref: EFO:0000265
xref: EMAPA:18601
xref: EV:0100027
xref: FMA:3734
xref: GAID:469
xref: galen:Aorta
xref: MA:0000062
xref: MAT:0000035
xref: MESH:A.07.231.114.056
xref: MIAA:0000035
xref: ncithesaurus:Aorta
xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA
xref: SCTID:181298001
xref: VHOG:0001523
xref: XAO:0003010
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001637 {source="BTO"} ! artery
is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel
is_a: UBERON:0004573 ! systemic artery
relationship: overlaps UBERON:0002224 {source="MA-modified"} ! thoracic cavity
relationship: part_of UBERON:0004571 {source="Wikipedia"} ! systemic arterial system
relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system

[Term]
id: UBERON:0000948
name: heart
namespace: uberon
alt_id: UBERON:FBbt_00003154-FMA_7088-MA_0000072-MIAA_0000036-XAO_0000064-ZFA_0000114
def: "a myogenic muscular organ found in the cardiovascular system. It is responsible for pumping blood throughout the blood vessels by repeated, rhythmic contractions. The vertebrate heart is composed of cardiac muscle, which is an involuntary striated muscle tissue found only in this organ, and connective tissue. Primitive fish have a four-chambered heart; however, the chambers are arranged sequentially so that this primitive heart is quite unlike the four-chambered hearts of mammals and birds. The first chamber is the sinus venosus, which collects de-oxygenated blood, from the body, through the hepatic and cardinal veins. From here, blood flows into the atrium and then to the powerful muscular ventricle where the main pumping action takes place. The fourth and final chamber is the conus arteriosus which contains several valves and sends blood to the ventral aorta. The ventral aorta delivers blood to the gills where it is oxygenated and flows, through the dorsal aorta, into the rest of the body. (In tetrapods, the ventral aorta has divided in two; one half forms the ascending aorta, while the other forms the pulmonary artery. In the adult fish, the four chambers are not arranged in a straight row but, instead, form an S-shape with the latter two chambers lying above the former two. This relatively simpler pattern is found in cartilaginous fish and in the more primitive ray-finned fish. In teleosts, the conus arteriosus is very small and can more accurately be described as part of the aorta rather than of the heart proper. The conus arteriosus is not present in any amniotes which presumably having been absorbed into the ventricles over the course of evolution. Similarly, while the sinus venosus is present as a vestigial structure in some reptiles and birds, it is otherwise absorbed into the right atrium and is no longer distinguishable[WP]." [Wikipedia:Heart]
comment: note that we use the term 'circulatory organ' for the generic class. Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepi- thelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" doi:10.1101/gad.1485706
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "chambered heart" EXACT [UBERON:cjm]
synonym: "Herz" RELATED [BTO:0000562]
synonym: "vertebrate heart" EXACT []
xref: AAO:0010210
xref: BILA:0000020
xref: BTO:0000562
xref: EFO:0000815
xref: EHDAA2:0000738
xref: EHDAA:420
xref: EMAPA:16105
xref: EV:0100018
xref: FMA:7088
xref: GAID:174
xref: galen:Heart
xref: MA:0000072
xref: MAT:0000036
xref: MESH:A.07.541
xref: MIAA:0000036
xref: ncithesaurus:Heart
xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA
xref: SCTID:302509004
xref: TAO:0000114
xref: VHOG:0000276
xref: XAO:0000064
xref: ZFA:0000114
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007100 ! circulatory organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
intersection_of: UBERON:0007100 ! circulatory organ
intersection_of: has_part UBERON:0004151 ! cardiac chamber
relationship: develops_from UBERON:0004141 ! heart tube
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: has_part UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0004535 ! cardiovascular system

[Term]
id: UBERON:0000949
name: endocrine system
namespace: uberon
alt_id: UBERON:FBbt_00003214-FBbt_00005068-FMA_9668-MA_0000012-XAO_0000158-ZFA_0001158
def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system]
subset: uberon_slim
subset: vertebrate_core
synonym: "endocrine glandular system" EXACT [EHDAA2:0002224]
synonym: "endocrine system" EXACT []
synonym: "systema endocrinum" EXACT []
xref: AAO:0010279
xref: EFO:0002969
xref: EHDAA2:0002224
xref: EV:0100128
xref: FBbt:00005068
xref: FMA:9668
xref: GAID:439
xref: MA:0000012
xref: MESH:A.06
xref: ncithesaurus:Endocrine_System
xref: SCTID:278876000
xref: TAO:0001158
xref: VHOG:0000098
xref: XAO:0000158
xref: ZFA:0001158
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0000950
name: gracilis
namespace: uberon
alt_id: UBERON:FBbt_00003277-FMA_43882-MA_0002311
def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gracilis muscle" EXACT [BTO:0000536]
xref: BTO:0000536
xref: FMA:43882
xref: galen:Gracilis
xref: MA:0002311
xref: ncithesaurus:Gracilis
xref: OpenCyc:Mx4rv7If8pwpEbGdrcN5Y29ycA
xref: SCTID:181689005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0000951
name: rotator muscle
namespace: uberon
alt_id: UBERON:FBbt_00003314-FMA_23081
comment: This class was created automatically from a combination of ontologies
xref: FMA:23081
xref: SCTID:244872002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0000952
name: adductor muscle
namespace: uberon
alt_id: UBERON:FBbt_00003317-FMA_74998
def: "Muscle that causes adduction can be called an adductor muscle. For example in biology, the muscle or muscles in the interior of a bivalve mollusk which serve to close the valves are called adductor muscles, and the large foot to shell muscle in gastropods such as the abalone and limpet is also known as an adductor muscle[WP]. A muscle that brings a body part closer to the sagittal plane of the body[ZFA, WikipediaLAdduction]." [Wikipedia:Adductor_muscle]
comment: TODO - add functional xp definition. TODO - check MA. Note this is a structural relation in FMA
subset: functional_classification
subset: uberon_slim
subset: vertebrate_core
synonym: "adductor" RELATED []
synonym: "adductor group (leg)" EXACT [MA:0002267]
xref: BTO:0000030
xref: FBbt:00003317
xref: FMA:74998
xref: MA:0002267
xref: SCTID:181670005
xref: TAO:0002136
xref: ZFA:0005268
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0000955
name: brain
namespace: uberon
alt_id: UBERON:FBbt_00003624-FBbt_00005095-FMA_50801-MA_0000168-MIAA_0000098-MIAA_0000341-WBbt_0005440-XAO_0000010-ZFA_0000008
def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals.[1] Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [Wikipedia:Brain]
comment: include synganglion?
subset: major_organ
subset: uberon_slim
subset: vertebrate_core
synonym: "encephalon" RELATED [BTO:0000142]
synonym: "synganglion" RELATED []
xref: AAO:0010478
xref: ABA:Brain
xref: BILA:0000135
xref: BTO:0000142
xref: EFO:0000302
xref: EHDAA2:0000183
xref: EHDAA:2641
xref: EHDAA:6485
xref: EMAPA:16894
xref: EV:0100164
xref: FBbt:00005095
xref: FMA:50801
xref: GAID:571
xref: galen:Brain
xref: MA:0000168
xref: MAT:0000098
xref: MESH:A.08.186.211
xref: MIAA:0000098
xref: ncithesaurus:Brain
xref: NIF_GrossAnatomy:birnlex_796
xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
xref: SCTID:258335003
xref: TAO:0000008
xref: VHOG:0000157
xref: XAO:0000010
xref: ZFA:0000008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 {source="GO"} ! organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0006238 {evidence="definitional"} ! future brain
relationship: part_of UBERON:0000033 {source="FMA"} ! head
relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system

[Term]
id: UBERON:0000957
name: lamina
namespace: uberon
alt_id: UBERON:FBbt_00003708-FMA_67265
def: "Any thin layer or plate." [Wikipedia:Lamina]
comment: TODO - merge with cell layer?
subset: uberon_slim
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue

[Term]
id: UBERON:0000965
name: lens of camera-type eye
namespace: uberon
alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
def: "Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
comment: Taxon notes: This class excludes compound eye corneal lenses.
subset: uberon_slim
subset: vertebrate_core
synonym: "camera-type eye lens" EXACT [GO:0002088]
synonym: "crystalline lens" RELATED [BTO:0000723]
synonym: "eye lens" EXACT SENSU []
synonym: "lens" EXACT SENSU []
synonym: "lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29]
synonym: "ocular lens" RELATED [BTO:0000723]
xref: AAO:0010348
xref: BTO:0000723
xref: EHDAA:9057
xref: EMAPA:17838
xref: EV:0100343
xref: FMA:58241
xref: MA:0000275
xref: MAT:0000141
xref: MESH:A.09.371.509
xref: MIAA:0000141
xref: ncithesaurus:Crystalline_Lens
xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0000975
xref: SCTID:181169005
xref: TAO:0000035
xref: VHOG:0000169
xref: XAO:0000008
xref: ZFA:0000035
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005389 ! transparent eye structure
relationship: develops_from UBERON:0003073 ! lens placode
relationship: develops_from UBERON:0005426 ! lens vesicle
relationship: induced_by UBERON:0003902 ! retinal neural layer
relationship: part_of UBERON:0001801 ! anterior segment of eyeball

[Term]
id: UBERON:0000966
name: retina
namespace: uberon
alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152
def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator]
comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods
subset: uberon_slim
subset: vertebrate_core
synonym: "inner layer of eyeball" EXACT []
synonym: "Netzhaut" RELATED [BTO:0001175]
synonym: "tunica interna of eyeball" EXACT []
xref: AAO:0010352
xref: BTO:0001175
xref: EFO:0000832
xref: EHDAA2:0001627
xref: EHDAA:4757
xref: EMAPA:17168
xref: EV:0100348
xref: FMA:58301
xref: GAID:755
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png
xref: MA:0000276
xref: MAT:0000142
xref: MESH:A.09.371.729
xref: MIAA:0000142
xref: ncithesaurus:Retina
xref: NIF_GrossAnatomy:birnlex_1153
xref: NIF_GrossAnatomy:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: SCTID:181171005
xref: TAO:0000152
xref: VHOG:0000229
xref: XAO:0000009
xref: ZFA:0000152
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005388 ! photoreceptor array
relationship: develops_from UBERON:0003072 ! optic cup
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
relationship: part_of UBERON:0005743 ! central nervous system plus retina

[Term]
id: UBERON:0000970
name: eye
namespace: uberon
alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
def: "An organ that detects light." [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
comment: Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
subset: functional_classification
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "light-detecting organ" RELATED []
synonym: "photoreceptor" BROAD []
synonym: "visual apparatus" RELATED [EV:0100336]
xref: BILA:0000017
xref: BTO:0000439
xref: EFO:0000827
xref: EV:0100336
xref: FBbt:00005162
xref: GAID:69
xref: MAT:0000140
xref: MESH:A.01.456.505.420
xref: MIAA:0000140
xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0002104 ! visual system

[Term]
id: UBERON:0000974
name: neck
namespace: uberon
alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
comment: TODO - generic definition
subset: uberon_slim
xref: AEO:0000108
xref: BTO:0000420
xref: EFO:0000967
xref: EHDAA2:0003108
xref: FMA:7155
xref: GAID:86
xref: galen:Neck
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg
xref: MA:0000024
xref: MAT:0000297
xref: MESH:A.01.598
xref: MIAA:0000297
xref: ncithesaurus:Neck
xref: OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA
xref: SCTID:302550007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0007811 ! craniocervical region

[Term]
id: UBERON:0000975
name: sternum
namespace: uberon
alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331
def: "The sternum or breastbone, in vertebrate anatomy, is a flat bone. It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life." [ISBN:3110148986, Wikipedia:Sternum]
comment: Editor note: in EMAPA this is part of the skeleton of pectoral girdle. Here we have a strict spatial disjointness condition between the thorax and appendages so we do not include this
subset: uberon_slim
synonym: "breastbone" RELATED [BTO:0001302]
synonym: "vertebrate sternum" EXACT []
xref: AAO:0000765
xref: BTO:0001302
xref: EHDAA2:0001914
xref: EHDAA:9561
xref: EMAPA:18344
xref: FMA:7485
xref: GAID:246
xref: galen:Sternum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg
xref: MA:0001331
xref: MESH:A.02.835.232.904.766
xref: ncithesaurus:Sternum
xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA
xref: SCTID:302522007
xref: VHOG:0000856
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003827 ! thoracic segment bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0000976
name: humerus
namespace: uberon
alt_id: UBERON:FBbt_00004562-FMA_13303-MA_0001356
def: "Paired long bones of endochondral origin that extend from the pectoral girdle to the elbows[AAO, modified]." [AAO:0000679, Wikipedia:Humerus]
comment: homologous to proximal metapterygial mesomere [Hall 2007]
subset: uberon_slim
xref: AAO:0000679
xref: EFO:0001398
xref: EMAPA:18468
xref: EMAPA:19106
xref: FMA:13303
xref: GAID:183
xref: galen:Humerus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg
xref: MA:0001356
xref: MESH:A.02.835.232.087.412
xref: ncithesaurus:Humerus
xref: SCTID:181923006
xref: VHOG:0001158
xref: XAO:0003210
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 {source="FMA"} ! long bone
is_a: UBERON:0003607 ! forelimb long bone
is_a: UBERON:0004250 ! upper arm bone
relationship: develops_from UBERON:0006245 {evidence="definitional"} ! humerus cartilage condensation
relationship: part_of UBERON:0001440 {source="FMA"} ! forelimb skeleton
relationship: part_of UBERON:0003822 {source="FMA"} ! forelimb stylopod
relationship: proximally_connected_to UBERON:0007831 ! skeleton of pectoral girdle

[Term]
id: UBERON:0000978
name: leg
namespace: uberon
alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095
def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb]
comment: The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'.  Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot
subset: uberon_slim
synonym: "lower extremity" RELATED [MESH:A.01.378.610]
synonym: "tetrapod leg" EXACT []
xref: BTO:0000721
xref: EFO:0001411
xref: EHDAA2:0000972
xref: EHDAA:5151
xref: EHDAA:6176
xref: EHDAA:8289
xref: EMAPA:17489
xref: GAID:49
xref: MA:0000047
xref: MESH:A.01.378.610
xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA
xref: VHOG:0000345
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006058 ! multi-limb segment region
relationship: distally_connected_to UBERON:0002387 ! foot
relationship: part_of UBERON:0002103 ! hindlimb
relationship: proximally_connected_to UBERON:0001464 ! hip

[Term]
id: UBERON:0000979
name: tibia
namespace: uberon
alt_id: UBERON:FBbt_00004642-FMA_24476-MA_0001361
def: "Larger and stronger of the two bones in the leg below the knee in vertebrates and connects the knee with the ankle bones." [Wikipedia:Tibia]
comment: Does not include the tibia segment of the arthropod leg FBbt:00004642
subset: uberon_slim
synonym: "shankbone" EXACT [Wikipedia:Tibia]
synonym: "shinbone" EXACT [Wikipedia:Tibia]
xref: AAO:0000890
xref: BTO:0001252
xref: EFO:0003054
xref: EMAPA:18513
xref: EMAPA:19142
xref: FMA:24476
xref: GAID:204
xref: galen:Tibia
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray260.png/200px-Gray260.png
xref: MA:0001361
xref: MESH:A.02.835.232.500.883
xref: ncithesaurus:Tibia
xref: OpenCyc:Mx4rvtq3-ZwpEbGdrcN5Y29ycA
xref: SCTID:182061009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 {source="FMA"} ! long bone
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0004251 ! lower leg bone
relationship: develops_from UBERON:0010849 ! tibia cartilaginous condensation
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton

[Term]
id: UBERON:0000980
name: trochanter
namespace: uberon
alt_id: UBERON:FBbt_00004643-FMA_82513
def: "bony prominences near the upper extremity of the femur; there are two in human (greater and lesser trochanters) and three in many other mammalian species (greater, lesser and third); these normally serve as attachment points for hip and thigh muscles[MP]" [Wikipedia:Trochanter]
subset: uberon_slim
synonym: "femoral trochanter" EXACT [AAO:0000897]
synonym: "trochanter of femur" EXACT []
xref: AAO:0000897
xref: FMA:82513
xref: MA:0002821
xref: ncithesaurus:Trochanter
xref: SCTID:182047004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0000981 {source="MA"} ! femur

[Term]
id: UBERON:0000981
name: femur
namespace: uberon
alt_id: UBERON:FBbt_00004644-FMA_9611-MA_0001359
def: "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur]
comment: homologous to proximal metapterygial mesomere [Hall 2007].
subset: uberon_slim
synonym: "femoral bone" RELATED [BTO:0001284]
synonym: "os femorale" RELATED [BTO:0001284]
synonym: "os femoris" RELATED [BTO:0001284]
synonym: "thigh bone" EXACT []
xref: AAO:0000889
xref: BTO:0001284
xref: EFO:0001396
xref: EMAPA:18514
xref: EMAPA:19143
xref: FMA:9611
xref: GAID:199
xref: galen:Femur
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray252.png/200px-Gray252.png
xref: MA:0001359
xref: MESH:A.02.835.232.500.247
xref: ncithesaurus:Femur
xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA
xref: SCTID:182046008
xref: VHOG:0001159
xref: XAO:0003214
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0003826 ! upper leg bone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: develops_from UBERON:0010129 {evidence="definitional"} ! femur cartilage condensation
relationship: part_of UBERON:0000376 {source="FMA"} ! hindlimb stylopod
relationship: part_of UBERON:0001441 {source="FMA"} ! hindlimb skeleton
relationship: proximally_connected_to UBERON:0007832 ! skeleton of pelvic girdle

[Term]
id: UBERON:0000982
name: skeletal joint
namespace: uberon
alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596
def: "Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VAO]." [VAO:0000101, Wikipedia:Joint]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "articular joint" RELATED [BTO:0001686]
synonym: "articulation" BROAD [VAO:0000101]
synonym: "joint" BROAD [FMA:7490, VAO:0000101]
xref: AEO:0000182
xref: BTO:0001686
xref: EFO:0000948
xref: EMAPA:19204
xref: FMA:7490
xref: GAID:102
xref: galen:Joint
xref: MA:0000319
xref: MAT:0000188
xref: MESH:A.02.835.583
xref: MIAA:0000188
xref: ncithesaurus:Joint
xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0003182
xref: SCTID:302536002
xref: TAO:0000367
xref: VAO:0000101
xref: VHOG:0001276
xref: XAO:0000171
xref: ZFA:0001596
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004905 ! articulation
relationship: connected_to UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0004770 ! articular system

[Term]
id: UBERON:0000983
name: metatarsus region
namespace: uberon
alt_id: UBERON:FBbt_00004648-FMA_24997-MA_0000049
def: "Limb segment that consists of the long bones of the foot. The metatarsals are analogous to the metacarpal bones of the hand." [Wikipedia:Metatarsus]
comment: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton
subset: uberon_slim
synonym: "hind metapodium" EXACT [AAO:0000221, http://en.wiktionary.org/wiki/metapodial, MA:th]
synonym: "metatarsal part of foot" EXACT [FMA:24997]
synonym: "metatarsal region" EXACT [FMA:24997]
synonym: "regio metatarsalis" EXACT [FMA:24997, FMA:TA]
xref: FMA:24997
xref: MA:0000049
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008784 ! lower limb segment
is_a: UBERON:0009877 ! metapodium region
intersection_of: UBERON:0009877 ! metapodium region
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0000989
name: penis
namespace: uberon
alt_id: UBERON:FBbt_00004852-FMA_9707-MA_0000408-MIAA_0000186
def: "The penis (plural penises, penes) is an external sexual organ of certain biologically male organisms, in both vertebrates and invertebrates. The penis is a reproductive organ, technically an intromittent organ, and for placental mammals, additionally serves as the external organ of urination. The penis is generally found on mammals and reptiles. [WP,unvetted]." [Wikipedia:Penis]
comment: Most male birds (e.g., roosters and turkeys) have a cloaca (also present on the female), but not a penis. Among bird species with a penis are paleognathes (tinamous and ratites), Anatidae (ducks, geese and swans), and a very few other species (such as flamingoes). A bird penis is different in structure from mammal penises, being an erectile expansion of the cloacal wall and being erected by lymph, not blood. It is usually partially feathered and in some species features spines and brush-like filaments, and in flaccid state curls up inside the cloaca[WP]
subset: organ_slim
subset: uberon_slim
synonym: "phallus" RELATED []
xref: BTO:0000405
xref: EFO:0000987
xref: EHDAA2:0001433
xref: EHDAA:9380
xref: EMAPA:18682
xref: EMAPA:18996
xref: EV:0100107
xref: FMA:9707
xref: GAID:389
xref: galen:Penis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Labelled_flaccid_penis.jpg/200px-Labelled_flaccid_penis.jpg
xref: MA:0000408
xref: MAT:0000186
xref: MESH:A.05.360.444.492
xref: MIAA:0000186
xref: ncithesaurus:Penis
xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA
xref: SCTID:265793009
xref: VHOG:0000727
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ
relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital ridge
relationship: develops_from UBERON:0005876 {source="EHDAA2"} ! genital tubercle

[Term]
id: UBERON:0000990
name: reproductive system
namespace: uberon
alt_id: UBERON:FBbt_00004857-FMA_7160-MA_0000326-MIAA_0000305-WBbt_0005747-XAO_0000142-ZFA_0000632
def: "Anatomical system that has as its parts the organs concerned with reproduction." [Wikipedia:Reproductive_system]
comment: This class was created automatically from a combination of ontologies
subset: functional_classification
subset: uberon_slim
subset: vertebrate_core
synonym: "animal reproductive system" RELATED [BTO:0000081]
synonym: "genital system" RELATED []
synonym: "genitalia" RELATED PLURAL []
synonym: "Geschlechtsorgan" RELATED [BTO:0000081]
synonym: "organa genitalia" RELATED [BTO:0000081]
synonym: "reproductive tissue" RELATED [BTO:0000081]
xref: AAO:0010258
xref: BILA:0000103
xref: BTO:0000081
xref: EFO:0000809
xref: EHDAA2:0001603
xref: EHDAA:5923
xref: EMAPA:17381
xref: EV:0100100
xref: FBbt:00004826
xref: FBbt:00004857
xref: FMA:7160
xref: GAID:363
xref: HAO:0000374
xref: HAO:0000895
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Penis.svg/200px-Penis.svg.png
xref: MA:0000326
xref: MIAA:0000305
xref: ncithesaurus:Reproductive_System
xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA
xref: SCTID:278875001
xref: TAO:0000632
xref: VHOG:0000182
xref: WBbt:0005747
xref: XAO:0000142
xref: ZFA:0000632
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0000991
name: gonad
namespace: uberon
alt_id: UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413
def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator]
comment: FMA xref is a 'general anatomical term'
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gonada" EXACT []
xref: AAO:0000213
xref: BILA:0000123
xref: BTO:0000534
xref: EMAPA:17383
xref: FBbt:00004858
xref: FMA:18250
xref: GAID:368
xref: HAO:0000379
xref: MA:0002420
xref: MESH:A.05.360.576
xref: ncithesaurus:Gonad
xref: OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA
xref: SCTID:304623008
xref: TAO:0000413
xref: VHOG:0000397
xref: WBbt:0005175
xref: XAO:0003146
xref: ZFA:0000413
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003133 ! reproductive organ
relationship: develops_from UBERON:0005564 ! gonad primordium
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0002323 ! body cavity

[Term]
id: UBERON:0000992
name: female gonad
namespace: uberon
alt_id: UBERON:FBbt_00004865-FMA_7209-MA_0000384-MIAA_0000125-XAO_0000258-ZFA_0000403
def: "Ovum-producing female reproductive organ." [Wikipedia:Ovary]
comment: Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[WP].
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "female organism genitalia gonad" EXACT [OBOL:automatic]
synonym: "female organism genitalia gonada" EXACT [OBOL:automatic]
synonym: "female organism reproductive system gonad" EXACT [OBOL:automatic]
synonym: "female organism reproductive system gonada" EXACT [OBOL:automatic]
synonym: "female reproductive system gonad" EXACT [OBOL:automatic]
synonym: "female reproductive system gonada" EXACT [OBOL:automatic]
synonym: "genitalia of female organism gonad" EXACT [OBOL:automatic]
synonym: "genitalia of female organism gonada" EXACT [OBOL:automatic]
synonym: "gonad of female organism genitalia" EXACT [OBOL:automatic]
synonym: "gonad of female organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of female reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gonad of reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "gonada of female organism genitalia" EXACT [OBOL:automatic]
synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of female reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "ovaries" RELATED PLURAL []
synonym: "ovary" EXACT []
synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039]
synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic]
synonym: "reproductive system of female organism gonada" EXACT [OBOL:automatic]
xref: AAO:0000371
xref: BILA:0000125
xref: BTO:0000975
xref: EHDAA2:0001360
xref: EHDAA:8124
xref: EMAPA:17962
xref: EV:0100111
xref: FBbt:00004865
xref: FMA:7209
xref: GAID:367
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000384
xref: MESH:A.05.360.319.114.630
xref: MIAA:0000125
xref: ncithesaurus:Ovary
xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA
xref: SCTID:181464007
xref: TAO:0000403
xref: VHOG:0000251
xref: XAO:0000258
xref: ZFA:0000403
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000991 ! gonad
is_a: UBERON:0003134 ! female reproductive organ
intersection_of: UBERON:0000991 ! gonad
intersection_of: part_of UBERON:0000474 ! female reproductive system
disjoint_from: UBERON:0009117 ! indifferent gonad
relationship: develops_from UBERON:0009117 ! indifferent gonad
relationship: part_of UBERON:0000474 ! female reproductive system

[Term]
id: UBERON:0000993
name: oviduct
namespace: uberon
alt_id: UBERON:FBbt_00004911-FMA_18245-MA_0000385-MIAA_0000126-XAO_0003052-ZFA_0000560
def: "passage from the ovaries to the outside of the body[Wikipedia:Oviduct]." [Wikipedia:Oviduct]
comment: note that the more specific class fallopian tube is included, which has mammal-specific relationships
subset: uberon_slim
subset: vertebrate_core
synonym: "salpinx" RELATED [BTO:0000980]
synonym: "tuba uterina" RELATED [BTO:0000980]
synonym: "tuba uterinae" RELATED [BTO:0000980]
synonym: "uterine tube" RELATED []
xref: AAO:0010533
xref: BTO:0000980
xref: EFO:0000974
xref: EMAPA:18984
xref: GAID:366
xref: MAT:0000126
xref: MESH:A.13.706
xref: MIAA:0000126
xref: ncithesaurus:Oviduct
xref: TAO:0000560
xref: VHOG:0001136
xref: XAO:0003052
xref: ZFA:0000560
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000025 ! tube
is_a: UBERON:0005156 ! reproductive structure
relationship: continuous_with UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000474 ! female reproductive system

[Term]
id: UBERON:0000995
name: uterus
namespace: uberon
alt_id: UBERON:FBbt_00004924-FMA_17558-MA_0000389-MIAA_0000127-WBbt_0006760
def: "a major female hormone-responsive reproductive sex organ of most mammals including humans. One end, the cervix, opens into the vagina, while the other is connected to one or both fallopian tubes, depending on the species. It is within the uterus that the fetus develops during gestation, usually developing completely in placental mammals such as humans and partially in marsupials such as kangaroos and opossums. Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused[WP]." [Wikipedia:Uterus]
comment: Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle "vagina" which functions as the birth canal. Marsupial embryos form a choriovitelline "placenta" (which can be thought of as something between a monotreme egg and a "true" placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream.
subset: organ_slim
subset: uberon_slim
synonym: "uterine horn" RELATED []
synonym: "uterine horns" RELATED []
synonym: "womb" RELATED [BTO:0001424]
xref: BTO:0001424
xref: EFO:0000975
xref: EMAPA:29915
xref: EV:0100113
xref: FMA:17558
xref: GAID:172
xref: galen:Uterus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000389
xref: MAT:0000127
xref: MESH:A.05.360.319.679
xref: MIAA:0000127
xref: ncithesaurus:Uterus
xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA
xref: SCTID:181452004
xref: VHOG:0001137
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003975 ! internal female genitalia
is_a: UBERON:0004175 ! internal reproductive organ
relationship: develops_from UBERON:0005795 ! embryonic uterus
relationship: part_of UBERON:0000474 ! female reproductive system

[Term]
id: UBERON:0000996
name: vagina
namespace: uberon
alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128
def: "a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
comment: Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688
subset: uberon_slim
xref: BTO:0000243
xref: EFO:0000976
xref: EMAPA:18986
xref: EV:0100117
xref: FMA:19949
xref: GAID:381
xref: galen:Vagina
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg
xref: MA:0000394
xref: MAT:0000128
xref: MESH:A.05.360.319.779
xref: MIAA:0000128
xref: ncithesaurus:Vagina
xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA
xref: SCTID:181441005
xref: VHOG:0001138
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003975 ! internal female genitalia
relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus
relationship: part_of UBERON:0000474 ! female reproductive system

[Term]
id: UBERON:0000997
name: mammalian vulva
namespace: uberon
alt_id: UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748
def: "external genital organs of the female mammal[WP]." [Wikipedia:Vulva]
comment: editor note: todo - add pudendum
subset: uberon_slim
synonym: "female pudendum" EXACT [FMA:20462]
synonym: "female pudendum" EXACT [BTO:0003101]
synonym: "mammalian vulva" EXACT []
synonym: "puboperineal region" EXACT [FMA:20462]
synonym: "pudendum femininum" EXACT [FMA:20462, FMA:TA]
synonym: "skin of female pudendum" EXACT []
synonym: "skin of vulva" EXACT []
synonym: "vulva" EXACT [MA:0000395]
xref: BTO:0003101
xref: EFO:0000978
xref: EV:0100118
xref: FMA:20462
xref: GAID:383
xref: galen:Vulva
xref: MA:0000395
xref: MAT:0000169
xref: MESH:A.05.360.319.887
xref: MIAA:0000169
xref: ncithesaurus:Vulva
xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA
xref: SCTID:265796001
xref: VHOG:0001458
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005056 {source="BTO"} ! external female genitalia
relationship: part_of UBERON:0000474 ! female reproductive system

[Term]
id: UBERON:0000998
name: seminal vesicle
namespace: uberon
alt_id: UBERON:FBbt_00004958-FMA_19386-MA_0000410-MIAA_0000171-WBbt_0006870
def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, Wikipedia:Seminal_vesicle]
comment: Function notes: The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70%[2] of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid.
subset: organ_slim
subset: uberon_slim
synonym: "glandula seminalis" RELATED [BTO:0001234]
synonym: "glandula vesiculosa" RELATED [BTO:0001234]
synonym: "gon_male_sves" RELATED []
synonym: "seminal gland" BROAD []
synonym: "vas efferens" RELATED []
synonym: "vesicul%c3%a6 seminales" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicula seminalis" RELATED [BTO:0001234]
synonym: "vesicula seminalis" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesiculae seminales" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicular gland" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicular glands" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicular seminalis" RELATED [Wikipedia:Seminal_vesicle]
xref: AAO:0010788
xref: BTO:0001234
xref: EFO:0000986
xref: EMAPA:19180
xref: EV:0100106
xref: FMA:19386
xref: GAID:394
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png
xref: MA:0000410
xref: MAT:0000171
xref: MESH:A.05.360.444.713
xref: MIAA:0000171
xref: ncithesaurus:Seminal_Vesicle
xref: OpenCyc:Mx4rwTtRpJwpEbGdrcN5Y29ycA
xref: SCTID:181434004
xref: VHOG:0001379
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006868 ! seminal fluid secreting gland
relationship: develops_from UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000473 ! testis
relationship: secretes UBERON:0010143 ! seminal vesicle fluid

[Term]
id: UBERON:0000999
name: ejaculatory duct
namespace: uberon
alt_id: UBERON:FBbt_00004965-FMA_19325-MIAA_0000170
def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]." [Wikipedia:Ejaculatory_duct]
subset: uberon_slim
synonym: "ductus ejaculatorii" EXACT PLURAL [BTO:0001580]
synonym: "ductus ejaculatorius" EXACT [BTO:0001580]
xref: BTO:0001580
xref: EFO:0000985
xref: EMAPA:19088
xref: FMA:19325
xref: GAID:388
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MAT:0000170
xref: MESH:A.05.360.444.251
xref: MIAA:0000170
xref: ncithesaurus:Ejaculatory_Duct
xref: OpenCyc:Mx4rwOt7MJwpEbGdrcN5Y29ycA
xref: SCTID:279665005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channel_for UBERON:0001968 ! semen
relationship: channel_for UBERON:0010143 ! seminal vesicle fluid
relationship: channels_from UBERON:0000998 ! seminal vesicle
relationship: channels_from UBERON:0001000 ! vas deferens
relationship: channels_into UBERON:0000057 ! urethra
relationship: part_of UBERON:0000079 ! male reproductive system

[Term]
id: UBERON:0001000
name: vas deferens
namespace: uberon
alt_id: UBERON:FBbt_00004968-FMA_19234-MA_0000413-MIAA_0000129-WBbt_0005337
def: "duct that transports sperm from the testis. In mammals this is from the epididymis." [Wikipedia:Vas_deferens]
comment: Taxon notes (from WP): Most vertebrates have some form of duct to transfer the sperm from the testes to the urethra. In cartilaginous fish and amphibians, sperm is carried through the archinephric duct, which also partially helps to transport urine from the kidneys. In teleosts, there is a distinct sperm duct, separate from the ureters, and often called the vas deferens, although probably not truly homologous with that in humans. In cartilaginous fishes, the part of the archinephric duct closest to the testis is coiled up to form an epididymis. Below this are a number of small glands secreting components of the seminal fluid. The final portion of the duct also receives ducts from the kidneys in most species. In amniotes, however, the archinephric duct has become a true vas deferens, and is used only for conducting sperm, never urine. As in cartilaginous fish, the upper part of the duct forms the epididymis. In many species, the vas deferens ends in a small sac for storing sperm. The only vertebrates to lack any structure resembling a vas deferens are the primitive jawless fishes, which release sperm directly into the body cavity, and then into the surrounding water through a simple opening in the body wall.
subset: uberon_slim
subset: vertebrate_core
synonym: "deferent duct" EXACT []
synonym: "ductus deferens" EXACT [Wikipedia:Vas_deferens]
synonym: "sperm duct" RELATED []
synonym: "vas deferen" EXACT []
synonym: "vasa deferentia" RELATED []
xref: BTO:0001427
xref: EFO:0000981
xref: EMAPA:18681
xref: EV:0100105
xref: FMA:19234
xref: GAID:404
xref: galen:VasDeferens
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png
xref: MA:0000413
xref: MESH:A.05.360.444.930
xref: MIAA:0000129
xref: ncithesaurus:Vas_Deferens
xref: OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA
xref: SCTID:245467009
xref: VHOG:0001135
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channel_for UBERON:0001968 ! semen
relationship: channels_from UBERON:0001301 ! epididymis
relationship: channels_into UBERON:0000999 ! ejaculatory duct
relationship: part_of UBERON:0005352 {source="FMA"} ! spermatic cord
relationship: part_of UBERON:0006947 ! male genital duct

[Term]
id: UBERON:0001003
name: epidermis
namespace: uberon
alt_id: UBERON:FBbt_00004993-FBbt_00005401-FMA_70596-MA_0000153-MIAA_0000154-WBbt_0005733-XAO_0000028-ZFA_0000105
def: "The outer layer of the skin[WP]. cellular, multilayered epithelium derived from the ectoderm[ZFA]." [ISBN10:0073040584, Wikipedia:Epidermis_(skin)]
comment: Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes).
subset: uberon_slim
subset: vertebrate_core
synonym: "adult epidermis" EXACT []
synonym: "skin" BROAD []
synonym: "vertebrate epidermis" EXACT []
xref: AAO:0000143
xref: BTO:0000404
xref: EFO:0000954
xref: EHDAA2:0001844
xref: EMAPA:17525
xref: EV:0100153
xref: FMA:70596
xref: GAID:932
xref: MA:0000153
xref: MAT:0000154
xref: MESH:A.10.272.497
xref: MIAA:0000154
xref: ncithesaurus:Epidermis
xref: SCTID:361694003
xref: TAO:0000105
xref: VHOG:0000077
xref: XAO:0000028
xref: ZFA:0000105
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0007376 ! outer epithelial layer
is_a: UBERON:0010371 ! ecto-epithelium
relationship: adjacent_to UBERON:0002067 ! dermis
relationship: developmentally_replaces UBERON:0003055 ! periderm
relationship: develops_from UBERON:0007383 ! enveloping layer of ectoderm
relationship: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002199 ! integument
relationship: surrounds UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0001004
name: respiratory system
namespace: uberon
alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
def: "Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system]
comment: This class was created automatically from a combination of ontologies
subset: functional_classification
subset: uberon_slim
subset: vertebrate_core
synonym: "apparatus respiratorius" EXACT []
synonym: "apparatus respiratorius " RELATED [BTO:0000203]
synonym: "Atmungssystem" RELATED [BTO:0000203]
synonym: "respiratory system" EXACT []
xref: AAO:0000541
xref: BTO:0000203
xref: EFO:0000804
xref: EHDAA2:0001604
xref: EHDAA:2203
xref: EMAPA:16727
xref: EV:0100036
xref: FMA:7158
xref: GAID:78
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Respiratory_system_complete_en.svg/200px-Respiratory_system_complete_en.svg.png
xref: MA:0000327
xref: MAT:0000030
xref: MESH:A.04
xref: MIAA:0000030
xref: ncithesaurus:Respiratory_System
xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA
xref: SCTID:278197002
xref: TAO:0000272
xref: VHOG:0000202
xref: XAO:0000117
xref: ZFA:0000272
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0001005
name: respiratory airway
namespace: uberon
alt_id: UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118
def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea]
comment: This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED)
subset: grouping_class
subset: uberon_slim
xref: SCTID:361380005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003103 ! compound organ
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0001007
name: digestive system
namespace: uberon
alt_id: UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339
def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system]
comment: note that many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class
subset: uberon_slim
subset: vertebrate_core
synonym: "alimentary system" RELATED []
synonym: "alimentary tract" RELATED []
synonym: "gastrointestinal system" RELATED []
synonym: "gut" RELATED []
xref: AAO:0000129
xref: BILA:0000082
xref: BTO:0000058
xref: EFO:0000793
xref: EV:0100056
xref: FBbt:00005055
xref: FMA:7152
xref: GAID:278
xref: galen:DigestiveSystem
xref: MA:0002431
xref: MAT:0000018
xref: MESH:A.03
xref: MIAA:0000018
xref: ncithesaurus:Digestive_System
xref: SCTID:278859004
xref: TADS:0000170
xref: TAO:0000339
xref: WBbt:0005748
xref: XAO:0000125
xref: ZFA:0000339
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0001008
name: excretory system
namespace: uberon
alt_id: UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163
def: "The excretory system is the system of an organism that mainly performs the function of excretion, the bodily process of discharging wastes. It is responsible for the elimination of wastes produced by the processes that maintain homeostasis." [BILA:0000015, Wikipedia:Excretory_system]
comment: In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page)
subset: uberon_slim
subset: vertebrate_core
synonym: "renal or urinary system" RELATED [EHDAA:5901]
synonym: "renal system" EXACT [GO:0001977]
synonym: "renal/urinary system" RELATED []
synonym: "systema urinaria" EXACT []
synonym: "systema urinarium" RELATED [BTO:0003092]
synonym: "urinary system" EXACT []
synonym: "urinary system" RELATED []
synonym: "urinary tract" RELATED []
xref: AAO:0010257
xref: BILA:0000015
xref: BTO:0003092
xref: EFO:0000803
xref: EHDAA2:0001601
xref: EHDAA:5901
xref: EMAPA:17366
xref: EV:0100095
xref: FBbt:00005056
xref: FMA:7159
xref: GAID:391
xref: galen:UrinaryTract
xref: MA:0000325
xref: MAT:0000027
xref: MESH:A.05.810
xref: MIAA:0000027
xref: ncithesaurus:Urinary_System
xref: SCTID:362204003
xref: TADS:0000162
xref: TAO:0000163
xref: VHOG:0000723
xref: WBbt:0005736
xref: XAO:0000143
xref: ZFA:0000163
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0001009
name: circulatory system
namespace: uberon
alt_id: UBERON:FBbt_00005057-FMA_7161-MA_0000010-MIAA_0000016-XAO_0000100-ZFA_0000010
def: "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system]
comment: the cardiovascular system and the lymphatic system are parts of the circulatory system
subset: uberon_slim
xref: AAO:0000959
xref: FBbt:00005057
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA
xref: VHOG:0001248
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0001010
name: diaphysis of ulna
namespace: uberon
synonym: "body of ulna" EXACT [FMA:33760]
synonym: "corpus ulnae" EXACT [FMA:33760]
synonym: "shaft of ulna" EXACT [FMA:33760]
synonym: "ulnar diaphysis" EXACT [FMA:33760]
xref: FMA:33760
xref: SCTID:302520004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna

[Term]
id: UBERON:0001012
name: head of radius
namespace: uberon
def: "The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]." [Wikipedia:Head_of_radius]
synonym: "radial head" EXACT [FMA:33773]
xref: FMA:33773
xref: galen:HeadOfRadius
xref: SCTID:181941003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint
relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius

[Term]
id: UBERON:0001013
name: adipose tissue
namespace: uberon
alt_id: UBERON:FBbt_00005065-FMA_20110-MA_0000009-MIAA_0000015-XAO_0003049
def: "Dense irregular connective tissue, which predominantly consists of adipocytes. Fat is stored in adipose tissue." [NLM:adipose+tissue, Wikipedia:Adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "adipose" RELATED [BTO:0001487]
synonym: "bodyfat" RELATED [BTO:0001487]
synonym: "fat" EXACT [MA:0000009]
synonym: "fat tissue" EXACT []
synonym: "fatty tissue" EXACT []
xref: AAO:0000001
xref: AEO:000020
xref: BTO:0001487
xref: EFO:0000234
xref: EFO:0000790
xref: EHDAA2:0003120
xref: EV:0100381
xref: FMA:20110
xref: GAID:920
xref: galen:FattyTissue
xref: MA:0000009
xref: MAT:0000015
xref: MESH:A.10.165.114
xref: MIAA:0000015
xref: ncithesaurus:Adipose_Tissue
xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA
xref: SCTID:55603005
xref: TAO:0002134
xref: VHOG:0001284
xref: XAO:0003049
xref: ZFA:0005345
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 {source="MA"} ! connective tissue
disjoint_from: UBERON:0003714 ! neural tissue

[Term]
id: UBERON:0001015
name: musculature
namespace: uberon
def: "A subdivision of the muscular system." [UBERON:cjm, Wikipedia:Muscular_system]
comment: AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here.
subset: uberon_slim
subset: vertebrate_core
synonym: "muscle group" EXACT []
synonym: "muscle system" RELATED []
synonym: "muscles" RELATED []
synonym: "muscles set" EXACT []
synonym: "musculature" EXACT []
synonym: "musculature system" RELATED []
synonym: "musculi" EXACT [FMA:32558, FMA:TA]
synonym: "set of muscles" EXACT [FMA:32558]
synonym: "set of organs" EXACT []
synonym: "set of skeletal muscles" EXACT [MA:0000165]
xref: AAO:0011066
xref: BTO:0000887
xref: EFO:0001949
xref: FMA:32558
xref: MA:0000165
xref: ncithesaurus:Muscle
xref: OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA
xref: TAO:0000548
xref: VAO:0005038
xref: WBbt:0005737
xref: ZFA:0000548
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001474
is_a: UBERON:0000480 ! anatomical group
relationship: part_of UBERON:0000383 ! musculature of body

[Term]
id: UBERON:0001016
name: nervous system
namespace: uberon
alt_id: UBERON:FBbt_00005093-FMA_7157-MA_0000016-MIAA_0000026-WBbt_0005735-XAO_0000177-ZFA_0000396
def: "a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "nerve net" NARROW [Wikipedia:Nerve_net]
synonym: "Nervensystem" RELATED [BTO:0001484]
xref: AAO:0000324
xref: BILA:0000079
xref: BTO:0001484
xref: EFO:0000802
xref: EHDAA2:0001246
xref: EHDAA:826
xref: EMAPA:16469
xref: EV:0100162
xref: FBbt:00005093
xref: FMA:7157
xref: GAID:466
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000016
xref: MAT:0000026
xref: MESH:A.08
xref: MIAA:0000026
xref: ncithesaurus:Nervous_System
xref: NIF_GrossAnatomy:birnlex_844
xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA
xref: SCTID:278196006
xref: TAO:0000396
xref: VHOG:0000402
xref: WBbt:0005735
xref: XAO:0000177
xref: ZFA:0000396
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000924 ! ectoderm

[Term]
id: UBERON:0001017
name: central nervous system
namespace: uberon
alt_id: UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012
def: "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. The part of the nervous system which in vertebrates consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Neuraxis plus retina[INCF]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator]
comment: ZFA retina NOT part_of CNS. XAO excludes retina in text def, retina part_of CNS. MA retina NOT part_of CNS. NIF_GA retina NOT part_of CNS. Fly also excludes it. EFO also excludes it. GO also excludes it.
subset: uberon_slim
subset: vertebrate_core
synonym: "cerebrospinal axis" EXACT [FMA:55675]
synonym: "CNS" EXACT []
synonym: "neuraxis" EXACT [FMA:55675]
synonym: "systema nervosum centrale" EXACT [FMA:55675, FMA:TA]
xref: AAO:0000090
xref: BILA:0000080
xref: BTO:0000227
xref: EFO:0000908
xref: EHDAA2:0000225
xref: EHDAA:828
xref: EMAPA:16470
xref: EMAPA:16754
xref: EV:0100163
xref: FBbt:00005094
xref: FMA:55675
xref: GAID:570
xref: MA:0000167
xref: MAT:0000457
xref: MESH:A.08.186
xref: ncithesaurus:Central_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1099
xref: OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA
xref: SCTID:278199004
xref: TAO:0000012
xref: VHOG:0000293
xref: XAO:0000215
xref: ZFA:0000012
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0005743 ! central nervous system plus retina

[Term]
id: UBERON:0001021
name: nerve
namespace: uberon
alt_id: UBERON:FBbt_00005099-FMA_5914
alt_id: UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
def: "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nerve, ZFA:0007009, ZFIN:curator]
comment: check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment
subset: uberon_slim
subset: vertebrate_core
synonym: "neural subtree" RELATED [FMA:65132]
xref: AAO:0011070
xref: AEO:0000137
xref: BTO:0000925
xref: EHDAA2:0003137
xref: EHDAA:2851
xref: EHDAA:3776
xref: EHDAA:4657
xref: EV:0100162
xref: FBbt:00005105
xref: FMA:65132
xref: GAID:758
xref: galen:Nerve
xref: MA:0000217
xref: ncithesaurus:Nerve
xref: OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA
xref: SCTID:256864008
xref: TAO:0007009
xref: XAO:0003047
xref: ZFA:0007009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000122 {source="FBbt"} ! neuron projection bundle
is_a: UBERON:0003714 {source="EHDAA2"} ! neural tissue
relationship: part_of UBERON:0000010 ! peripheral nervous system

[Term]
id: UBERON:0001028
name: diaphysis of radius
namespace: uberon
synonym: "body of radius" EXACT [FMA:33782]
synonym: "corpus radii" EXACT [FMA:33782]
synonym: "radial diaphysis" EXACT [FMA:33782]
synonym: "shaft of radius" EXACT [FMA:33782]
xref: FMA:33782
xref: SCTID:302518002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone

[Term]
id: UBERON:0001032
name: sensory system
namespace: uberon
alt_id: UBERON:FBbt_00005155-FMA_78499-MA_0002442-MIAA_0000031-WBbt_0005832-ZFA_0000282
def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system]
comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs
subset: uberon_slim
subset: vertebrate_core
synonym: "organa sensuum" EXACT [FMA:75259, FMA:TA]
synonym: "sense organ subsystem" EXACT []
synonym: "sense organs" EXACT [FMA:75259]
synonym: "sense organs set" EXACT [FMA:75259]
synonym: "sensory organ system" RELATED []
synonym: "sensory subsystem" EXACT []
xref: AAO:0000555
xref: BILA:0000099
xref: EFO:0000805
xref: EHDAA2:0003094
xref: EMAPA:16192
xref: FBbt:00005827
xref: FMA:75259
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: MA:0002442
xref: MAT:0000031
xref: MESH:A.09
xref: MIAA:0000031
xref: NIF_GrossAnatomy:nlx_anat_090816
xref: TAO:0000282
xref: XAO:0003194
xref: ZFA:0000282
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
relationship: overlaps UBERON:0001016 ! nervous system
relationship: part_of UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0001033
name: gustatory system
namespace: uberon
alt_id: UBERON:FBbt_00005159-FMA_7194-MA_0002446-MIAA_0000275-ZFA_0001101
def: "A subset of the sensory system for the sensing of taste." [Wikipedia:Gustatory_system]
comment: in ZFA and MA this is a subtype of sensory system. we should change sensory system to disambiguate parts and wholes
subset: uberon_slim
subset: vertebrate_core
synonym: "gustatory organ system" EXACT []
synonym: "taste system" EXACT []
xref: AAO:0010577
xref: BILA:0000143
xref: EFO:0000830
xref: FMA:7194
xref: MA:0002446
xref: MAT:0000275
xref: MIAA:0000275
xref: NIF_GrossAnatomy:nlx_anat_090803
xref: SCTID:423940004
xref: TAO:0001101
xref: XAO:0003197
xref: ZFA:0001101
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0001035
name: dento-alveolar joint
namespace: uberon
alt_id: UBERON:FBbt_00005172-FMA_7495-MA_0001499
def: "Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth.[FMA]" [FMA:FMA, Wikipedia:Gomphosis]
comment: This class was created automatically from a combination of ontologies
synonym: "dento-alveolar syndesmosis" EXACT [FMA:7495]
synonym: "peg-and-socket joint" EXACT [FMA:7495]
synonym: "socket" EXACT [FMA:7495]
synonym: "syndesmosis dentoalveolaris" EXACT [FMA:7495, FMA:TA]
xref: FMA:7495
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1003.png/200px-Gray1003.png
xref: MA:0001499
xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002209 {source="FMA"} ! fibrous joint
is_a: UBERON:0002213 {source="MA"} ! cartilaginous joint
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001708 ! jaw

[Term]
id: UBERON:0001037
name: strand of hair
namespace: uberon
alt_id: UBERON:FBbt_00005182-FMA_53667-MA_0000155-MIAA_0000160
def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [Wikipedia:Hair]
comment: this class defines an individual hair. todo - consider fur / coat of fur, which has_part hair. TODO: for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales)
subset: uberon_slim
synonym: "coat hair" RELATED []
synonym: "coat/ hair" RELATED []
synonym: "fur" RELATED []
synonym: "hair" EXACT []
synonym: "microchaeta" RELATED []
synonym: "quill" RELATED SENSU []
synonym: "setulae" RELATED []
synonym: "vibrissa" RELATED SENSU []
synonym: "whisker" RELATED SENSU []
xref: BTO:0001501
xref: EFO:0000958
xref: EMAPA:18769
xref: EV:0100157
xref: FMA:53667
xref: GAID:71
xref: MA:0000155
xref: MAT:0000160
xref: MESH:A.17.360
xref: MIAA:0000160
xref: ncithesaurus:Hair
xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww
xref: SCTID:361702001
xref: VHOG:0001191
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000021 ! cutaneous appendage
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0002073 ! hair follicle
relationship: part_of UBERON:0002199 ! integument

[Term]
id: UBERON:0001041
name: foregut
namespace: uberon
alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
def: "Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
xref: AAO:0011042
xref: BILA:0000085
xref: BTO:0000507
xref: EHDAA2:0000557
xref: EHDAA:520
xref: EMAPA:16548
xref: FBbt:00005379
xref: FMA:45616
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png
xref: MA:0001526
xref: ncithesaurus:Foregut
xref: SCTID:361409009
xref: TGMA:0001014
xref: VHOG:0000285
xref: XAO:0000232
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme

[Term]
id: UBERON:0001042
name: chordate pharynx
namespace: uberon
alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056
def: "Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [Wikipedia:Pharynx]
comment: Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here
subset: uberon_slim
subset: vertebrate_core
synonym: "pharynx" BROAD SENSU [FMA:46688]
xref: AAO:0000967
xref: BTO:0001049
xref: EFO:0000836
xref: EHDAA2:0001458
xref: EHDAA:2947
xref: EMAPA:16706
xref: EMAPA:18838
xref: EV:0100065
xref: FMA:46688
xref: GAID:155
xref: galen:Pharynx
xref: MA:0000432
xref: MESH:A.03.867
xref: ncithesaurus:Pharynx
xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA
xref: TAO:0000056
xref: VHOG:0000462
xref: XAO:0003227
xref: ZFA:0000056
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006562 ! pharynx
relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0001043
name: esophagus
namespace: uberon
alt_id: UBERON:FBbt_00005381-FMA_7131-MA_0000352-MIAA_0000048-XAO_0000127-ZFA_0000204
def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [http://www.rivm.nl/interspeciesinfo/inter/oesophagus/, Wikipedia:Esophagus]
comment: esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies:  The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995)
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gullet" EXACT []
synonym: "oesophagus" EXACT []
xref: AAO:0000145
xref: ANISEED:1235301
xref: BTO:0000959
xref: EFO:0000835
xref: EHDAA2:0001285
xref: EHDAA:2937
xref: EMAPA:16833
xref: EMAPA:18860
xref: EV:0100069
xref: FBbt:00005381
xref: FMA:7131
xref: GAID:291
xref: galen:Esophagus
xref: MA:0000352
xref: MAT:0000048
xref: MESH:A.03.365
xref: MIAA:0000048
xref: ncithesaurus:Esophagus
xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA
xref: SCTID:181245004
xref: TAO:0000204
xref: VHOG:0000450
xref: XAO:0000127
xref: ZFA:0000204
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004921 ! subdivision of digestive tract
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: develops_from UBERON:0009143 ! esophageal region
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0002224 ! thoracic cavity

[Term]
id: UBERON:0001045
name: midgut
namespace: uberon
alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103
def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
xref: BILA:0000086
xref: BTO:0000863
xref: EFO:0001950
xref: EHDAA2:0001185
xref: EHDAA:983
xref: EMAPA:16255
xref: FBbt:00005383
xref: FMA:45617
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg
xref: MA:0001564
xref: ncithesaurus:Midgut
xref: SCTID:361410004
xref: TGMA:0001036
xref: VHOG:0000290
xref: XAO:0000103
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract

[Term]
id: UBERON:0001046
name: hindgut
namespace: uberon
alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104
def: "Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future (vertebrates have some contribution from NC - UBERONREF:0000002). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
xref: AAO:0011052
xref: BILA:0000087
xref: BTO:0000510
xref: EHDAA2:0000779
xref: EHDAA:975
xref: EMAPA:16715
xref: FBbt:00005384
xref: FMA:45618
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png
xref: MA:0001527
xref: ncithesaurus:Hindgut
xref: SCTID:362856002
xref: TGMA:0001020
xref: VHOG:0000459
xref: XAO:0000104
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme

[Term]
id: UBERON:0001048
name: primordium
namespace: uberon
alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043
def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bud" RELATED []
synonym: "placode" RELATED [FBbt:00005495]
synonym: "rudiment" RELATED []
xref: AEO:0000171
xref: BTO:0001886
xref: EFO:0001652
xref: EHDAA2:0003171
xref: FBbt:00005495
xref: FMA:86589
xref: MAT:0000482
xref: ncithesaurus:Primordium
xref: XAO:0003043
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 {source="EHDAA2"} ! developing anatomical structure

[Term]
id: UBERON:0001049
name: neural tube
namespace: uberon
alt_id: UBERON:FBbt_00005554-MIAA_0000069-ZFA_0001135
def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [Wikipedia:Neural_tube]
comment: The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium[GO:0021915]
subset: uberon_slim
subset: vertebrate_core
synonym: "presumptive central nervous system" RELATED []
xref: AAO:0010617
xref: BTO:0001057
xref: EHDAA2:0001254
xref: EHDAA:2869
xref: EHDAA:908
xref: EMAPA:16164
xref: EMAPA:16530
xref: EMAPA:16757
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000069
xref: MIAA:0000069
xref: ncithesaurus:Neural_Tube
xref: SCTID:362852000
xref: TAO:0001135
xref: VHOG:0000307
xref: XAO:0003204
xref: ZFA:0001135
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000025 ! tube
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: develops_from UBERON:0005068 ! neural rod
relationship: develops_from UBERON:0006241 {evidence="definitional"} ! future spinal cord
relationship: develops_into UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001016 {source="GO"} ! nervous system

[Term]
id: UBERON:0001051
name: hypopharynx
namespace: uberon
alt_id: UBERON:FBbt_00005751-FMA_54880-MA_0001796
def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx]
subset: uberon_slim
synonym: "laryngeal pharynx" EXACT [FMA:54877]
synonym: "laryngopharynx" EXACT [FMA:54877]
synonym: "pars laryngea pharyngis" RELATED [BTO:0001740]
xref: BTO:0001740
xref: EFO:0001388
xref: EHDAA2:0004574
xref: EV:0100068
xref: FMA:54880
xref: GAID:338
xref: MA:0001796
xref: MESH:A.03.867.490
xref: ncithesaurus:Hypopharynx
xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA
xref: SCTID:281490009
xref: VHOG:0000445
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0001062
name: anatomical entity
namespace: uberon
alt_id: UBERON:FBbt_root_00000000-FMA_62955
def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955]
subset: upper_level
xref: AAO:0010841
xref: AEO:0000000
xref: BILA:0000000
xref: CARO:0000000
xref: EHDAA2:0002229
xref: FBbt_root:00000000
xref: FMA:62955
xref: HAO:0000000
xref: MA:0000001
xref: NIF_GrossAnatomy:birnlex_6
xref: TAO:0100000
xref: TGMA:0001822
xref: ZFA:0100000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Term]
id: UBERON:0001064
name: ventral pancreatic duct
namespace: uberon
alt_id: UBERON:0005627
alt_id: UBERON:FMA_10419-MA_0000124-ZFA_0001372
def: "a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct]
comment: Development notes: Upon reaching its final destination, the ventral pancreatic bud fuses with the much larger dorsal pancreatic bud. At this point of fusion, the main ducts of the ventral and dorsal pancreatic buds fuse, forming the duct of Wirsung, the main pancreatic duct.[WP]
subset: uberon_slim
synonym: "canal of Wirsung" RELATED [BTO:0002362]
synonym: "chief pancreatic duct" EXACT [FMA:16003]
synonym: "duct of Wirsung" EXACT [Wikipedia:Pancreatic_duct]
synonym: "hepaticopancreatic duct" RELATED [BTO:0002362]
synonym: "main pancreatic duct" EXACT [MA:0000126]
synonym: "pancreatic duct" BROAD [MESH:A.03.734.667]
xref: BTO:0002362
xref: EHDAA2:0001396
xref: EHDAA:6905
xref: EMAPA:18821
xref: FMA:16003
xref: GAID:337
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1100.png/200px-Gray1100.png
xref: MA:0000126
xref: MESH:A.03.734.667
xref: ncithesaurus:Pancreatic_Duct
xref: RETIRED_EHDAA2:0002177
xref: SCTID:245385001
xref: VHOG:0000256
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0007329 {source="FMA"} ! pancreatic duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0004913 ! hepatopancreatic ampulla
relationship: continuous_with UBERON:0001174 ! common bile duct
relationship: develops_from UBERON:0003924 {source="EHDAA2"} ! ventral pancreatic bud
relationship: part_of UBERON:0000017 ! exocrine pancreas

[Term]
id: UBERON:0001066
name: intervertebral disk
namespace: uberon
alt_id: UBERON:FMA_10446-MA_0000110
def: "cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilaginous joint to allow slight movement of the vertebrae, and acts as a ligament to hold the vertebrae together[WP]." [Wikipedia:Intervertebral_disk]
subset: uberon_slim
synonym: "discus intervertebralis" EXACT [FMA:10446, FMA:TA]
synonym: "intervertebral cartilage" RELATED [AAO:0000795]
synonym: "intervertebral disc" EXACT []
synonym: "intervertebral fibrocartilage" RELATED [BTO:0003625]
synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc]
synonym: "spinal disk" RELATED [BTO:0003625]
xref: AAO:0000795
xref: BTO:0003625
xref: EFO:0001370
xref: FMA:10446
xref: GAID:105
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray301.png/200px-Gray301.png
xref: MA:0000110
xref: MESH:A.02.165.410
xref: ncithesaurus:Intervertebral_Disc
xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA
xref: SCTID:244570000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005174 ! back organ
relationship: adjacent_to UBERON:0002412 ! vertebra
relationship: part_of UBERON:0001468 ! intervertebral symphysis

[Term]
id: UBERON:0001067
name: vertebral arch joint
namespace: uberon
alt_id: UBERON:FMA_10447-MA_0001513
def: "a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Zygapophysial_joint]
subset: uberon_slim
synonym: "facet joint" EXACT []
synonym: "joint of vertebral arch" EXACT []
synonym: "joint of vertebral articular process" EXACT []
synonym: "zygapophyseal joint" EXACT []
synonym: "zygapophysial joint" EXACT []
xref: FMA:10447
xref: GAID:275
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png
xref: MA:0001513
xref: MESH:A.02.835.583.979
xref: ncithesaurus:Facet_Joint
xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA
xref: SCTID:89836005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: adjacent_to UBERON:0001079 ! superior articular process of vertebra
relationship: adjacent_to UBERON:0001080 ! inferior articular process of vertebra
relationship: part_of UBERON:0003861 ! neural arch

[Term]
id: UBERON:0001069
name: head of pancreas
namespace: uberon
alt_id: UBERON:FMA_10468-MA_0000122
def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [Wikipedia:Head_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pancreas head" EXACT []
synonym: "pancreatic head" EXACT []
synonym: "right extremity of pancreas" EXACT []
xref: EHDAA2:0001374
xref: EMAPA:17507
xref: EMAPA:18820
xref: FMA:10468
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg
xref: MA:0000122
xref: ncithesaurus:Head_of_the_Pancreas
xref: SCTID:362201006
xref: VHOG:0000448
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0003924 {source="EHDAA2-inferred", source="WP"} ! ventral pancreatic bud
relationship: part_of UBERON:0001264 ! pancreas

[Term]
id: UBERON:0001073
name: ileocecal junction
namespace: uberon
alt_id: UBERON:FMA_11338-MA_0000332
comment: This class was created automatically from a combination of ontologies
synonym: "ileocaecal junction" EXACT []
xref: FMA:11338
xref: MA:0000332
xref: SCTID:264021000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0001075
name: body of vertebra
namespace: uberon
alt_id: UBERON:FMA_11945-MA_0001457
def: "The body is the largest part of a vertebra, and is more or less cylindrical in shape. Its upper and lower surfaces are flattened and rough, and give attachment to the intervertebral fibrocartilages, and each presents a rim around its circumference. In front, the body is convex from side to side and concave from above downward. Behind, it is flat from above downward and slightly concave from side to side. Its anterior surface presents a few small apertures, for the passage of nutrient vessels. On the posterior surface is a single large, irregular aperture, or occasionally more than one, for the exit of the basi-vertebral veins from the body of the vertebra. [WP,unvetted]." [Wikipedia:Body_of_vertebra]
comment: Editor notes: vertebra classes required generalization for cartilage columns // todo - add subclasses: acoelus, amphicoelus, procoelus, opsithocoelus, heterocoelus; pleurocentrum, intercentrum; todo: add developmental relationships
subset: uberon_slim
subset: vertebrate_core
synonym: "autocentrum" EXACT [ZFA:0000126]
synonym: "centrum" EXACT []
synonym: "centrum of vertebra" EXACT []
synonym: "corpus vertebrae" RELATED [Wikipedia:Body_of_vertebra]
synonym: "corpus vertebrae (vertebrale)" EXACT [FMA:11945]
synonym: "vertebral body" EXACT [FMA:11945]
synonym: "vertebral centrum" EXACT [MA:0001457]
xref: AAO:0000697
xref: FMA:11945
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Corpusvertebrae.png/200px-Corpusvertebrae.png
xref: MA:0001457
xref: ncithesaurus:Vertebral_Body
xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA
xref: SCTID:361745008
xref: SCTID:362867001
xref: TAO:0000126
xref: VAO:0000183
xref: ZFA:0000126
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 {source="VAO"} ! skeletal element
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0002412 {source="MA"} ! vertebra

[Term]
id: UBERON:0001076
name: spinous process of vertebra
namespace: uberon
alt_id: UBERON:FMA_11948-MA_0001455
def: "The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [WP,unvetted]." [Wikipedia:Processus_spinosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "neural spine" RELATED []
synonym: "processus spinosus" EXACT []
synonym: "vertebra spinous process" EXACT []
xref: AAO:0000705
xref: EMAPA:25107
xref: FMA:11948
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Processusspinosusvertebrae.png/200px-Processusspinosusvertebrae.png
xref: MA:0001455
xref: SCTID:264259004
xref: TAO:0001336
xref: ZFA:0001336
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006061 ! process of vertebra
relationship: part_of UBERON:0003861 ! neural arch

[Term]
id: UBERON:0001077
name: transverse process of vertebra
namespace: uberon
alt_id: UBERON:FMA_11949-MA_0001456
def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [Wikipedia:Processus_transversus]
subset: uberon_slim
synonym: "processus transversus" EXACT []
synonym: "transverse process" EXACT []
synonym: "vertebra transverse process" EXACT []
xref: FMA:11949
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Processustransversusvertebrae.PNG/200px-Processustransversusvertebrae.PNG
xref: MA:0001456
xref: SCTID:264238006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006061 ! process of vertebra

[Term]
id: UBERON:0001078
name: pedicle of vertebra
namespace: uberon
alt_id: UBERON:FMA_11950-MA_0001458
def: "The pedicles are two short, thick processes, which project backward, one on either side, from the upper part of the body, at the junction of its posterior and lateral surfaces. They connect the body of the spinal vertebra to the arch. [WP,unvetted]." [Wikipedia:Pedicle_of_vertebral_arch]
subset: uberon_slim
synonym: "pedicle" BROAD []
synonym: "pedicle of vertebral arch" EXACT [FMA:11950]
synonym: "pediculus arcus vertebrae" EXACT [FMA:TA]
synonym: "vertebral pedicle" EXACT [FMA:11950]
xref: FMA:11950
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Pediculusarcusvertebrae.png/200px-Pediculusarcusvertebrae.png
xref: MA:0001458
xref: ncithesaurus:Pedicle_of_Vertebral_Arch
xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA
xref: SCTID:277422007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006061 ! process of vertebra
relationship: part_of UBERON:0002412 ! vertebra

[Term]
id: UBERON:0001079
name: superior articular process of vertebra
namespace: uberon
alt_id: UBERON:FMA_11953-MA_0001452
def: "Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra." [AAO:Pugener_and_Maglia_2008]
comment: TODO - add distinct classes for hemal vs neural?
subset: vertebrate_core
synonym: "cranial articular process of vertebra" EXACT []
synonym: "neural prezygapophysis" EXACT [ZFA:0001325]
synonym: "neural prezygopophyses" EXACT [ZFA:0001325]
synonym: "prezygapophysis" EXACT []
synonym: "processus articularis superior" EXACT []
synonym: "vertebra cranial articular process" EXACT []
xref: AAO:0000703
xref: FMA:11953
xref: http://www.informatics.jax.org/cookbook/figures/figure20.shtml
xref: MA:0001452
xref: SCTID:42424006
xref: TAO:0001325
xref: ZFA:0001325
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006062 ! articular process of vertebra

[Term]
id: UBERON:0001080
name: inferior articular process of vertebra
namespace: uberon
alt_id: UBERON:FMA_11954-MA_0001451
def: "Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra." [AAO:LAP]
comment: TODO - add distinct classes for hemal vs neural?
subset: vertebrate_core
synonym: "caudal articular process of vertebra" EXACT []
synonym: "neural postzygapophysis" NARROW [ZFA:0000681]
synonym: "neural postzygopophysis" EXACT [ZFA:0000681]
synonym: "postzygapophysis" EXACT []
synonym: "processus articularis inferior" EXACT []
synonym: "processus obliquus posterior" RELATED [AAO:0000702]
synonym: "vertebra caudal articular process" EXACT []
xref: AAO:0000702
xref: FMA:11954
xref: MA:0001451
xref: SCTID:30079000
xref: TAO:0000681
xref: ZFA:0000681
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006062 ! articular process of vertebra

[Term]
id: UBERON:0001083
name: myocardium of ventricle
namespace: uberon
alt_id: UBERON:FMA_12151-MA_0000082-ZFA_0005061
def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "cardiac muscle of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac ventricle muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart muscle of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart ventricle heart muscle" EXACT [OBOL:automatic]
synonym: "heart ventricle heart myocardium" EXACT [OBOL:automatic]
synonym: "heart ventricle muscle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle myocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart muscle" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "lower chamber of heart myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart of heart ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart of ventricle of heart" EXACT [OBOL:automatic]
synonym: "myocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "myocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "myocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "myocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "ventricle myocardium" EXACT []
synonym: "ventricle of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart muscle" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricle of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "ventricle of heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricular myocardium" EXACT []
xref: EFO:0003088
xref: FMA:12151
xref: MA:0000082
xref: SCTID:192084000
xref: TAO:0005061
xref: VHOG:0000604
xref: ZFA:0005061
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002349 ! myocardium
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle

[Term]
id: UBERON:0001084
name: skin of head
namespace: uberon
alt_id: UBERON:FMA_12166-MA_0000582
def: "A zone of skin that is part of a head [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "adult head zone of skin" EXACT [OBOL:automatic]
synonym: "head skin" EXACT []
synonym: "head zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of adult head" EXACT [OBOL:automatic]
synonym: "zone of skin of head" EXACT [OBOL:automatic]
xref: FMA:12166
xref: FMA:24756
xref: MA:0000582
xref: ncithesaurus:Head_Skin
xref: SCTID:181484006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000014 ! zone of skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0001086
name: articular cartilage
namespace: uberon
alt_id: UBERON:FMA_12264-MA_0000487-ZFA_0001644
def: "the bones of a synovial joint are covered by this layer of hyaline cartilage that lines the epiphyses of joint end of bone with a smooth, slippery surface that does not bind them together; articular cartilage functions to absorb shock and reduce friction during movement." [Wikipedia:Synovial_joint#Structure]
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilago articularis" EXACT []
xref: BTO:0001572
xref: EFO:0001902
xref: FMA:12264
xref: GAID:101
xref: galen:ArticularCartilage
xref: MA:0000487
xref: MESH:A.02.165.165
xref: ncithesaurus:Articular_Cartilage
xref: SCTID:305026006
xref: TAO:0001670
xref: ZFA:0001644
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001994 {source="MA"} ! hyaline cartilage
relationship: part_of UBERON:0000982 {source="BTO"} ! skeletal joint
relationship: part_of UBERON:0002217 {source="Wikipedia"} ! synovial joint

[Term]
id: UBERON:0001090
name: synovial fluid
namespace: uberon
alt_id: UBERON:FMA_12277-MA_0002544
def: "Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae.[FMA]" [FMA:FMA, Wikipedia:Synovial_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "joint fluid" EXACT []
xref: BTO:0001339
xref: ENVO:02000039
xref: FMA:12277
xref: GAID:265
xref: galen:SynovialFluid
xref: MA:0002544
xref: MESH:A.02.835.583.443.800.800
xref: ncithesaurus:Synovial_Fluid
xref: TAO:0005154
xref: ZFA:0005154
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0007617 ! synovial cavity of joint

[Term]
id: UBERON:0001091
name: calcareous tooth
namespace: uberon
alt_id: UBERON:FMA_12516-MA_0000348-MIAA_0000041-XAO_0000431-ZFA_0000644-ZFA_0000694
def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [FMA:12516, Wikipedia:Tooth, Wikipedia:Tooth_(animal)]
subset: uberon_slim
subset: vertebrate_core
synonym: "ceratobranchial 5 tooth" NARROW []
synonym: "dentine containing tooth" EXACT []
synonym: "tooth" EXACT []
synonym: "vertebrate tooth" EXACT []
xref: AEO:0000220
xref: BTO:0000397
xref: EFO:0000839
xref: EHDAA2:0004605
xref: EHDAA:8009
xref: EHDAA:8045
xref: EMAPA:17917
xref: EMAPA:17938
xref: EV:0100063
xref: FMA:12516
xref: GAID:1260
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Teeth_by_David_Shankbone.jpg/200px-Teeth_by_David_Shankbone.jpg
xref: MA:0000348
xref: MAT:0000041
xref: MESH:A.14.254.860
xref: MIAA:0000041
xref: ncithesaurus:Tooth
xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA
xref: SCTID:302214001
xref: TAO:0000694
xref: TAO:0001625
xref: VHOG:0000127
xref: XAO:0000431
xref: ZFA:0000694
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003913 ! tooth-like structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0000930 {source="XAO"} ! stomodeum
relationship: develops_from UBERON:0005087 {evidence="definitional"} ! tooth placode
relationship: develops_from UBERON:0005176 {source="ZFA"} ! tooth enamel organ
relationship: has_part UBERON:0001751 ! dentine
relationship: has_part UBERON:0001752 ! enamel
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0000166 ! oral opening

[Term]
id: UBERON:0001092
name: first cervical vertebra
namespace: uberon
alt_id: UBERON:FMA_12519-MA_0001421
def: "." [Wikipedia:Atlas_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "atlas" EXACT []
synonym: "Atlas (CI)" EXACT []
synonym: "C1" BROAD []
synonym: "C1 vertebra" EXACT []
synonym: "cervical atlas" EXACT [MP:0011576]
synonym: "cervical vertebra 1" EXACT []
xref: AAO:0000709
xref: EHDAA:10606
xref: FMA:12519
xref: GAID:236
xref: MA:0001421
xref: MESH:A.02.835.232.834.151.213
xref: ncithesaurus:C1_Vertebra
xref: TAO:0001167
xref: ZFA:0001167
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "vertebra_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anterior_to UBERON:0001093 ! second cervical vertebra

[Term]
id: UBERON:0001093
name: second cervical vertebra
namespace: uberon
alt_id: UBERON:FMA_12520-MA_0001422-ZFA_0000092
def: "second cervical vertebra (C2) of the spine." [Wikipedia:Axis_(anatomy)]
comment: note: not the same as ZFA term 'axis'
subset: uberon_slim
subset: vertebrate_core
synonym: "axis" RELATED INCONSISTENT [MA:0001422]
synonym: "axis (CII)" EXACT []
synonym: "C2" BROAD []
synonym: "C2 vertebra" EXACT []
synonym: "cervical axis" EXACT [MP:0004608]
synonym: "cervical vertebra 2" EXACT [MA:0001422]
synonym: "vertebra 2" EXACT [ZFA:0001168]
xref: EHDAA:10608
xref: FMA:12520
xref: GAID:237
xref: MA:0001422
xref: MESH:A.02.835.232.834.151.383
xref: ncithesaurus:Axis
xref: OpenCyc:Mx4rv-zaJJwpEbGdrcN5Y29ycA
xref: TAO:0001168
xref: ZFA:0001168
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "vertebra_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0001094
name: sacral vertebra
namespace: uberon
alt_id: UBERON:FMA_12526-XAO_0003078
subset: uberon_slim
synonym: "sacral segment" EXACT []
synonym: "segment of sacrum" EXACT []
xref: EMAPA:18336
xref: FMA:12526
xref: galen:SacralVertebra
xref: MA:0000313
xref: ncithesaurus:Sacral_Vertebra
xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA
xref: SCTID:361773005
xref: XAO:0003078
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0005179 ! pelvis organ
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column
relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage condensation
relationship: part_of UBERON:0006075 ! sacral region of vertebral column

[Term]
id: UBERON:0001095
name: caudal vertebra
namespace: uberon
alt_id: UBERON:FMA_12527-XAO_0003079-ZFA_0000326
def: "bones in the tails or coccyx of mammals. In zebrafish: Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [Wikipedia:Caudal_vertebra, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "caudal vertebrae" EXACT PLURAL []
synonym: "tail vertebra" RELATED [MA:0000310]
xref: EMAPA:18374
xref: MA:0000310
xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA
xref: TAO:0000326
xref: XAO:0003079
xref: ZFA:0000326
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002412 ! vertebra
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006076 ! caudal region of vertebral column
relationship: part_of UBERON:0006076 ! caudal region of vertebral column

[Term]
id: UBERON:0001096
name: wall of esophagus
namespace: uberon
alt_id: UBERON:FMA_12611-MA_0002691
def: "An anatomical wall that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic]
synonym: "anatomical wall of gullet" EXACT [OBOL:automatic]
synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic]
synonym: "esophageal wall" EXACT []
synonym: "esophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "esophagus wall" EXACT []
synonym: "gullet anatomical wall" EXACT [OBOL:automatic]
synonym: "gullet wall" EXACT [OBOL:automatic]
synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "oesophagus wall" EXACT [OBOL:automatic]
synonym: "wall of gullet" EXACT [OBOL:automatic]
synonym: "wall of oesophagus" EXACT [OBOL:automatic]
xref: FMA:12611
xref: MA:0002691
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0001098
name: incisor tooth
namespace: uberon
alt_id: UBERON:FMA_12823-MA_0000349
def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [Wikipedia:Incisor_tooth]
comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight — one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat
subset: uberon_slim
synonym: "incisor" EXACT [MA:0000349]
xref: BTO:0001741
xref: EHDAA:8011
xref: EHDAA:8047
xref: FMA:12823
xref: GAID:1263
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Gray997.png/200px-Gray997.png
xref: MA:0000349
xref: MESH:A.14.254.860.425
xref: ncithesaurus:Incisor
xref: OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA
xref: SCTID:420856006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003672 ! dentition

[Term]
id: UBERON:0001100
name: pectoralis minor
namespace: uberon
alt_id: UBERON:FMA_13109-MA_0002355
def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [Wikipedia:Pectoralis_minor]
subset: organ_slim
subset: uberon_slim
synonym: "pectoralis minor muscle" EXACT []
xref: EHDAA2:0001425
xref: EHDAA:8313
xref: EMAPA:18180
xref: FMA:13109
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Pectoralis_minor.png/200px-Pectoralis_minor.png
xref: MA:0002355
xref: ncithesaurus:Pectoralis_Minor
xref: SCTID:181625002
xref: VHOG:0000902
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001495 ! pectoral muscle

[Term]
id: UBERON:0001102
name: cartilage of main bronchus
namespace: uberon
alt_id: UBERON:FMA_13117-MA_0001846
def: "A cartilage that is part of a main bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic]
synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic]
synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic]
synonym: "cartilaginous ring of main bronchus" EXACT [EMAPA:19092]
synonym: "main bronchial cartilage" EXACT []
synonym: "main bronchus cartilage" EXACT []
synonym: "primary bronchus cartilage" EXACT [OBOL:automatic]
synonym: "principal bronchus cartilage" EXACT [OBOL:automatic]
xref: EMAPA:19092
xref: FMA:13117
xref: MA:0001846
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001956 ! cartilage of bronchus
is_a: UBERON:0003590 ! main bronchus connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus

[Term]
id: UBERON:0001103
name: diaphragm
namespace: uberon
alt_id: UBERON:FMA_13295-MA_0001904
def: "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." [GO:0060539, Wikipedia:Thoracid_diaphragm]
comment: The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3] The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution)
subset: organ_slim
subset: uberon_slim
synonym: "diaphragm muscle" EXACT [BTO:0000341]
synonym: "midriff" RELATED [BTO:0000341]
synonym: "phren" RELATED [BTO:0000341]
synonym: "thoracic diaphragm" EXACT []
xref: BTO:0000341
xref: EFO:0000937
xref: EHDAA2:0003495
xref: EMAPA:17701
xref: EV:0100376
xref: FMA:13295
xref: GAID:158
xref: MA:0001904
xref: MAT:0000502
xref: MESH:A.02.633.567.900.300
xref: ncithesaurus:Diaphragm
xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA
xref: SCTID:181614006
xref: VHOG:0000713
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0002426 ! chest muscle
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0003898 ! skeletal muscle of trunk
is_a: UBERON:0004830 ! respiratory system skeletal muscle
relationship: develops_from UBERON:0010084 {evidence="definitional"} ! future diaphragm
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0001105
name: clavicle
namespace: uberon
alt_id: UBERON:FMA_13321-MA_0001329
def: "In human anatomy, the clavicle or collar bone is classified as a flat bone that makes up part of the shoulder girdle. It receives its name from the Latin clavicula ('little key') because the bone rotates along its axis like a key when the shoulder is abducted. This movement is palpable. In some people, particularly females who may have less fat in this region, the location of the bone is clearly visible as it creates a bulge in the skin. [WP,unvetted]." [Wikipedia:Clavicle]
comment: Taxon notes: The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X] AO Notes: FMA and MA differ in whether they consider this part of the shoulder. Development notes: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4]
subset: uberon_slim
synonym: "clavicula" EXACT [VAO:0005031]
synonym: "clavicule bone" EXACT [VAO:0005031]
synonym: "collar bone" EXACT []
xref: AAO:0000761
xref: EMAPA:18721
xref: FMA:13321
xref: GAID:182
xref: galen:Clavicle
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png
xref: MA:0001329
xref: MESH:A.02.835.232.087.227
xref: ncithesaurus:Clavicle
xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA
xref: SCTID:181910004
xref: VAO:0005031
xref: VHOG:0000849
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 {source="FMA"} ! long bone
is_a: UBERON:0003461 {source="MA"} ! shoulder bone
is_a: UBERON:0007829 {source="MA"} ! pectoral girdle bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010905 {editor="mah", source="ISBN:978-0-12-319060-4"} ! clavicle bone primordium
relationship: has_developmental_contribution_from UBERON:0010843 {source="ISBN:978-0-12-319060-4", notes="from secondary cartilage of fusion"} ! clavicle cartilaginous condensation
relationship: part_of UBERON:0007831 {source="FMA", source="VAO"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0001107
name: sternohyoid
namespace: uberon
alt_id: UBERON:FMA_13341-MA_0002383-ZFA_0000283
def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid]
comment: todo - add taxon restriction
subset: uberon_slim
subset: vertebrate_core
synonym: "sternohyoid muscle" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoidei" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoideus" RELATED [Wikipedia:Sternohyoid_muscle]
xref: EMAPA:19271
xref: FMA:13341
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Sternohyoid_muscle.PNG/200px-Sternohyoid_muscle.PNG
xref: MA:0002383
xref: ncithesaurus:Sternohyoid
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001108
name: omohyoid
namespace: uberon
alt_id: UBERON:FMA_13342-MA_0002348
def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid]
comment: interior and superior belly
subset: uberon_slim
synonym: "omohyoid muscle" EXACT []
synonym: "omohyoideus" EXACT [Wikipedia:Omohyoid_muscle]
synonym: "omohyoideus muscle" EXACT [Wikipedia:Omohyoid_muscle]
xref: FMA:13342
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Gray1210.png/200px-Gray1210.png
xref: MA:0002348
xref: ncithesaurus:Omohyoid
xref: SCTID:244833001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001109
name: sternothyroid
namespace: uberon
alt_id: UBERON:FMA_13343-MA_0002386
def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid]
comment: ZFA has structure of same name that is mandibular
subset: uberon_slim
synonym: "sterno-hyoid" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoid muscle" EXACT []
synonym: "sternohyoidei" RELATED PLURAL [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoideus" RELATED [Wikipedia:Sternohyoid_muscle]
xref: EMAPA:19272
xref: FMA:13343
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Sternothyroideus.png/200px-Sternothyroideus.png
xref: MA:0002386
xref: ncithesaurus:Sternothyroid
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001110
name: thyrohyoid
namespace: uberon
alt_id: UBERON:FMA_13344-MA_0002393
def: "The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid]
subset: uberon_slim
synonym: "thyreohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle]
synonym: "thyreohyoideus muscle" RELATED [Wikipedia:Thyrohyoid_muscle]
synonym: "thyrohyoid muscle" EXACT [Wikipedia:Thyrohyoid_muscle]
synonym: "thyrohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle]
xref: EMAPA:19273
xref: EMAPA:25143
xref: FMA:13344
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Thyrohyoid_muscle.PNG/200px-Thyrohyoid_muscle.PNG
xref: MA:0002393
xref: ncithesaurus:Thyrohyoid
xref: SCTID:244832006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle

[Term]
id: UBERON:0001111
name: intercostal muscle
namespace: uberon
alt_id: UBERON:FMA_13354-MA_0002324
def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intercostales" RELATED []
xref: EFO:0001368
xref: EHDAA2:0000841
xref: EHDAA:5988
xref: FMA:13354
xref: GAID:159
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002324
xref: MESH:A.02.633.567.900.500
xref: ncithesaurus:Intercostal_Muscle
xref: OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA
xref: SCTID:181746004
xref: VHOG:0000903
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002426 {source="FMA"} ! chest muscle
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass

[Term]
id: UBERON:0001112
name: latissimus dorsi
namespace: uberon
alt_id: UBERON:FMA_13357-MA_0002331
def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]." [Wikipedia:Latissimus_dorsi]
subset: uberon_slim
synonym: "latissimus dorsi muscle" EXACT []
xref: EFO:0003067
xref: EHDAA2:0000932
xref: EHDAA:8307
xref: EMAPA:18178
xref: FMA:13357
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png
xref: MA:0002331
xref: VHOG:0000930
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010982 {source="EHDAA2"} ! latissimus dorsi pre-muscle mass
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0001113
name: lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13361-MA_0000360
def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes]
comment: editor note: some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts
synonym: "hepatic lobe" EXACT []
synonym: "liver lobe" EXACT []
synonym: "lobus hepatis" EXACT []
xref: EMAPA:18306
xref: FMA:13361
xref: MA:0000360
xref: ncithesaurus:Liver_Lobe
xref: SCTID:245378000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002107 ! liver

[Term]
id: UBERON:0001114
name: right lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13362-MA_0000363
def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "gall bladder lobe" RELATED SENSU [ZFA:0005173]
synonym: "liver right lobe" EXACT []
synonym: "right liver lobe" EXACT [ZFA:0005173]
xref: EHDAA2:0001008
xref: EHDAA:4001
xref: EMAPA:18311
xref: FMA:13362
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000363
xref: ncithesaurus:Right_Lobe_of_the_Liver
xref: SCTID:362182008
xref: TAO:0005173
xref: VHOG:0001424
xref: ZFA:0005173
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001113 ! lobe of liver

[Term]
id: UBERON:0001115
name: left lobe of liver
namespace: uberon
alt_id: UBERON:FMA_13363-MA_0000361
def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "left liver lobe" EXACT []
synonym: "liver left lobe" EXACT []
xref: EHDAA2:0001000
xref: EHDAA:3995
xref: EMAPA:18307
xref: FMA:13363
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000361
xref: ncithesaurus:Left_Lobe_of_the_Liver
xref: SCTID:362183003
xref: TAO:0005172
xref: VHOG:0001423
xref: ZFA:0005172
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001113 ! lobe of liver

[Term]
id: UBERON:0001121
name: longus colli
namespace: uberon
alt_id: UBERON:FMA_13370-MA_0002341
def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]." [Wikipedia:Longus_colli]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "longi colli" RELATED [Wikipedia:Longus_colli_muscle]
synonym: "longus colli muscle" EXACT [Wikipedia:Longus_colli_muscle]
xref: FMA:13370
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Longus_colli.png/200px-Longus_colli.png
xref: MA:0002341
xref: ncithesaurus:Longus_Colli
xref: SCTID:244836009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0008818 {source="FMA"} ! superior mediastinum

[Term]
id: UBERON:0001122
name: scalenus medius
namespace: uberon
alt_id: UBERON:FMA_13386-MA_0002370
def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [Wikipedia:Scalenus_medius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial scalene muscle" EXACT []
synonym: "middle scalene" EXACT []
synonym: "musculus scalenus medius" EXACT [FMA:13386, FMA:TA]
xref: FMA:13386
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Scalenus_medius.png/200px-Scalenus_medius.png
xref: MA:0002370
xref: ncithesaurus:Scalenus_Medius
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002377 ! muscle of neck

[Term]
id: UBERON:0001123
name: scalenus posterior
namespace: uberon
alt_id: UBERON:FMA_13387-MA_0002369
def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the Serratus anterior. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [Wikipedia:Scalenus_posterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus scalenus posterior" EXACT [FMA:13387, FMA:TA]
synonym: "posterior scalene" EXACT []
synonym: "posterior scalene muscle" EXACT []
synonym: "scalenus dorsalis" EXACT []
xref: FMA:13387
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f3/Scalenus_posterior.png/200px-Scalenus_posterior.png
xref: MA:0002369
xref: ncithesaurus:Scalenus_Dorsalis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002377 ! muscle of neck

[Term]
id: UBERON:0001124
name: pectoral limb scapula
namespace: uberon
alt_id: UBERON:FMA_13394-MA_0001330-ZFA_0000583
def: "In human anatomy, the scapula, omo (Medical Latin), or shoulder blade, is the bone that connects the humerus (arm bone) with the clavicle (collar bone). The scapula forms the posterior (back) located part of the shoulder girdle. In humans, it is a flat bone, roughly triangular in shape, placed on a posterolateral aspect of the thoracic cage. [WP,unvetted]." [Wikipedia:Scapula]
comment: Alternate definition: A scapula that is connected to a pectoral fin. Taxon notes: present in all tetrapods with even vestiges of anterior limbs, e.g., turtles & birds & mammals. Development notes: chick scapula is of dual origin and segmentally organized[ISBN:978-0-12-319060-4]
subset: uberon_slim
synonym: "shoulder blade" EXACT []
xref: AAO:0000751
xref: BTO:0001218
xref: EFO:0001400
xref: EMAPA:18722
xref: FMA:13394
xref: GAID:186
xref: galen:Scapula
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png
xref: MA:0001330
xref: ncithesaurus:Scapula
xref: OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA
xref: SCTID:302517007
xref: VHOG:0001398
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003461 ! shoulder bone
is_a: UBERON:0006849 ! scapula
relationship: develops_from UBERON:0006290 {evidence="definitional"} ! scapula cartilage condensation
relationship: part_of UBERON:0001467 {source="FMA"} ! shoulder

[Term]
id: UBERON:0001125
name: serratus anterior
namespace: uberon
alt_id: UBERON:FMA_13397-MA_0002378
def: "The serratus anterior is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [Wikipedia:Serratus_anterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Boxer's muscle" EXACT []
synonym: "serratus anterior muscle" EXACT []
synonym: "serratus ventralis" EXACT []
xref: EHDAA2:0001832
xref: EHDAA:9463
xref: EMAPA:18525
xref: FMA:13397
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Serratus_anterior.png/200px-Serratus_anterior.png
xref: MA:0002378
xref: ncithesaurus:Serratus_Ventralis
xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA
xref: SCTID:181748003
xref: VHOG:0000679
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010986 {source="EHDAA2"} ! serratus anterior pre-muscle mass

[Term]
id: UBERON:0001126
name: serratus posterior superior
namespace: uberon
alt_id: UBERON:FMA_13401-MA_0002377
def: "The Serratus posterior superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [Wikipedia:Serratus_posterior_superior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "serratus dorsalis cranialis" EXACT []
synonym: "superior serratus posterior" EXACT []
xref: FMA:13401
xref: MA:0002377
xref: ncithesaurus:Serratus_Dorsalis_Cranialis
xref: SCTID:244935007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001127
name: serratus posterior inferior
namespace: uberon
alt_id: UBERON:FMA_13402-MA_0002376
def: "The Serratus posterior inferior muscle (or posterior serratus) is a muscle of the human body. [WP,unvetted]." [Wikipedia:Serratus_posterior_inferior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior serratus posterior" EXACT []
synonym: "serratus dorsalis caudalis" EXACT []
xref: FMA:13402
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/200px-Serratus_posterior.PNG
xref: MA:0002376
xref: ncithesaurus:Serratus_Dorsalis_Caudalis
xref: SCTID:244936008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001128
name: sternocleidomastoid
namespace: uberon
alt_id: UBERON:FMA_13407-MA_0002384
def: "In human anatomy, the sternocleidomastoid muscle, also known as sternomastoid and commonly abbreviated as SCM, is a paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid]
comment: Editor notes: TODO: sternocleidomastoid = sternomastoid + Cleidomastoideus. Origin: from manubrium sterni (sterno) and clavicle (cleido) and it's insertion at the mastoid process of the temporal bone.
subset: uberon_slim
synonym: "sterno-cleido-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sterno-mastoid" EXACT []
synonym: "sterno-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoid muscle" EXACT [BTO:0005125]
synonym: "sternocleidomastoid muscles" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoidei" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoideus" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoideus muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoids" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternomastoid" EXACT []
synonym: "sternomastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternomastoid muscle" EXACT []
synonym: "sternomastoid muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "supraclavicularis muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle]
xref: BTO:0005125
xref: EMAPA:25137
xref: FMA:13407
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray512.png/200px-Gray512.png
xref: MA:0002384
xref: ncithesaurus:Sternocleidomastoid_Muscle
xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA
xref: SCTID:181741009
xref: VHOG:0000853
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002377 ! muscle of neck
relationship: develops_from UBERON:0010987 ! sterno-mastoid pre-muscle mass

[Term]
id: UBERON:0001129
name: subscapularis
namespace: uberon
alt_id: UBERON:FMA_13413-MA_0002388
def: "The Subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [Wikipedia:Subscapularis]
subset: uberon_slim
synonym: "subscapularis muscle" EXACT []
xref: EHDAA2:0001943
xref: EHDAA:8317
xref: EMAPA:18181
xref: FMA:13413
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002388
xref: ncithesaurus:Subscapularis
xref: OpenCyc:Mx4rviCRIJwpEbGdrcN5Y29ycA
xref: SCTID:277446000
xref: VHOG:0000850
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0010993 ! subscapularis pre-muscle mass

[Term]
id: UBERON:0001130
name: vertebral column
namespace: uberon
alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
def: "Subdivision of skeletal system that consists of all the vertebra in the body." [Wikipedia:Vertebral_column]
subset: uberon_slim
subset: vertebrate_core
synonym: "backbone" NARROW [FMA:13478]
synonym: "columna vertebralis" RELATED [BTO:0000818]
synonym: "dorsal spine" RELATED [BTO:0000818]
synonym: "spinal column" RELATED [MESH:A.02.835.232.834]
synonym: "spine" BROAD [FMA:13478]
synonym: "vertebral column skeleton" RELATED [AAO:0000699]
xref: AAO:0000699
xref: AAO:0000734
xref: BTO:0000818
xref: EFO:0001369
xref: EHDA:10119
xref: EHDAA:2895
xref: EMAPA:16666
xref: FMA:13478
xref: GAID:106
xref: galen:SpinalColumn
xref: MA:0002416
xref: MESH:A.02.835.232.834
xref: ncithesaurus:Spinal_Cord_Column
xref: ncithesaurus:Vertebral_Column
xref: NIF_Subcellular:sao1145756102
xref: OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA
xref: SCTID:44300000
xref: TAO:0001559
xref: VAO:0000185
xref: VHOG:0001142
xref: XAO:0003074
xref: ZFA:0001559
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001137 {source="FMA"} ! back
relationship: part_of UBERON:0002090 ! postcranial axial skeleton

[Term]
id: UBERON:0001131
name: vertebral foramen
namespace: uberon
alt_id: UBERON:FMA_13479-MA_0001454
def: "In a typical vertebra, the vertebral foramen is the foramen formed by the anterior segment, and the posterior part, the vertebral arch. The vertebral foramen begins at cervical vertebrae #1 and continues inferior to lumbar vertebrae #5. Within this foramen the spinal cord and associated meninges are housed. [WP,unvetted]." [Wikipedia:Vertebral_foramen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vertebra neural canal" EXACT []
xref: AAO:0000729
xref: FMA:13479
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Foramenvertebrale.png/200px-Foramenvertebrale.png
xref: MA:0001454
xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA
xref: SCTID:280734009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0010276 ! vertebral column opening
relationship: part_of UBERON:0002412 ! vertebra

[Term]
id: UBERON:0001133
name: cardiac muscle tissue
namespace: uberon
alt_id: UBERON:FMA_14068-MA_0002441
def: "Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]." [FMA:14068]
comment: check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac muscle" EXACT []
synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: AAO:0010245
xref: AEO:0000142
xref: BTO:0000199
xref: EHDAA2:0003142
xref: FMA:14068
xref: galen:CardiacMuscle
xref: galen:CardiacMuscleTissue
xref: MA:0002441
xref: ncithesaurus:Heart_Muscle
xref: TAO:0005280
xref: ZFA:0005280
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002036 ! striated muscle tissue
disjoint_from: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0000948 {source="ZFA"} ! heart

[Term]
id: UBERON:0001134
name: skeletal muscle tissue
namespace: uberon
alt_id: UBERON:FMA_14069-MA_0002439
def: "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP]." [Wikipedia:Skeletal_muscle]
comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Consider FBbt:00005073 - somatic muscle.
subset: uberon_slim
subset: vertebrate_core
synonym: "skeletal muscle" EXACT []
synonym: "skeletal muscle organ" RELATED []
synonym: "skeletal muscle system" RELATED [BTO:0001103]
synonym: "somatic muscle" RELATED [BTO:0001103]
xref: AAO:0011099
xref: BTO:0001103
xref: EFO:0000888
xref: EHDAA2:0001842
xref: EHDAA:2923
xref: EHDAA:5035
xref: EHDAA:5043
xref: EHDAA:5978
xref: EHDAA:5984
xref: EHDAA:8277
xref: EHDAA:8291
xref: EHDAA:8326
xref: EHDAA:9146
xref: EV:0100377
xref: FMA:14069
xref: GAID:141
xref: MA:0002439
xref: MAT:0000302
xref: MESH:A.02.633.567
xref: MIAA:0000302
xref: ncithesaurus:Skeletal_Muscle_Tissue
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: SCTID:426215008
xref: TAO:0005277
xref: VHOG:0000319
xref: XAO:0000174
xref: ZFA:0005277
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002036 ! striated muscle tissue
relationship: develops_from UBERON:0003082 ! myotome

[Term]
id: UBERON:0001135
name: smooth muscle tissue
namespace: uberon
alt_id: UBERON:FMA_14070-MA_0002440
def: "Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue]
comment: terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells.
subset: uberon_slim
subset: vertebrate_core
synonym: "involuntary muscle" EXACT []
synonym: "non-striated muscle" EXACT []
synonym: "smooth muscle" EXACT []
synonym: "textus muscularis nonstriatus" EXACT [FMA:14070, FMA:TA]
synonym: "visceral muscle" NARROW SENSU []
synonym: "visceral muscle tissue" NARROW SENSU []
xref: AAO:0010244
xref: AEO:0000141
xref: BTO:0001260
xref: EFO:0000889
xref: EHDAA2:0003141
xref: EMAPA:18923
xref: EV:0100378
xref: FBbt:00003525
xref: FMA:14070
xref: GAID:167
xref: galen:SmoothMuscle
xref: galen:SmoothMuscleTissue
xref: MA:0000166
xref: MAT:0000303
xref: MESH:A.02.633.570
xref: MIAA:0000303
xref: ncithesaurus:Smooth_Muscle_Tissue
xref: OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA
xref: TAO:0005274
xref: VHOG:0001246
xref: WBbt:0005781
xref: XAO:0000175
xref: ZFA:0005274
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002385 ! muscle tissue
disjoint_from: UBERON:0002036 ! striated muscle tissue

[Term]
id: UBERON:0001136
name: mesothelium
namespace: uberon
alt_id: UBERON:FMA_14074-MA_0000565
def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri)." [Wikipedia:Mesothelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "meso-epithelium" EXACT []
xref: AEO:0000111
xref: BTO:0002422
xref: EHDAA2:0003111
xref: EHDAA:2331
xref: EHDAA:2339
xref: EHDAA:2349
xref: EHDAA:295
xref: EHDAA:6073
xref: EHDAA:640
xref: EHDAA:646
xref: FMA:14074
xref: MA:0000565
xref: ncithesaurus:Mesothelium
xref: SCTID:361918002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000487 ! simple squamous epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000487 ! simple squamous epithelium
intersection_of: adjacent_to UBERON:0000042 ! serous membrane
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: adjacent_to UBERON:0000042 ! serous membrane
relationship: develops_from UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0001137
name: back
namespace: uberon
alt_id: UBERON:FMA_14181-MA_0000020
def: "In humans: large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body[WP]." [Wikipedia:Back]
comment: Editor notes: TODO - add definition for non-humans
subset: uberon_slim
synonym: "back of body proper" EXACT [FMA:14181]
synonym: "back of trunk" EXACT [MA:0000020]
xref: BTO:0001713
xref: EFO:0001405
xref: FMA:14181
xref: GAID:30
xref: galen:Back
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/432px-Gray-back.PNG/200px-432px-Gray-back.PNG
xref: MA:0000020
xref: MESH:A.01.176
xref: ncithesaurus:Back
xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0001152
name: cystic duct
namespace: uberon
alt_id: UBERON:FMA_14539-MA_0000355
def: "The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]." [Wikipedia:Cystic_duct]
subset: uberon_slim
subset: vertebrate_core
xref: EHDAA2:0000333
xref: EHDAA:3045
xref: EMAPA:16841
xref: FMA:14539
xref: GAID:290
xref: galen:CysticDuct
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000355
xref: MESH:A.03.159.183.419
xref: ncithesaurus:Cystic_Duct
xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA
xref: SCTID:245398005
xref: TAO:0005166
xref: VHOG:0000213
xref: ZFA:0005166
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0002110 ! gallbladder
relationship: develops_from UBERON:0005604 {source="EHDAA2"} ! hepatic duct extrahepatic part
relationship: part_of UBERON:0001173 {source="FMA"} ! biliary tree

[Term]
id: UBERON:0001155
name: colon
namespace: uberon
alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a>" [Wikipedia:Colon_(anatomy), ZFIN:curator]
comment: TODO: abstract this such that it legitimately covers all vertebrates
subset: uberon_slim
subset: vertebrate_core
synonym: "hindgut" RELATED []
synonym: "large bowel" EXACT []
synonym: "posterior intestine" NARROW []
synonym: "posterior intestine - zebrafish" BROAD []
xref: AAO:0010400
xref: BTO:0000269
xref: EFO:0000361
xref: EHDAA2:0000779
xref: EMAPA:18939
xref: EV:0100079
xref: FMA:14543
xref: GAID:309
xref: galen:Colon
xref: MA:0000335
xref: MAP:0000001
xref: MAT:0000526
xref: MESH:A.03.492.411.495.356
xref: ncithesaurus:Colon
xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA
xref: SCTID:302508007
xref: TAO:0000706
xref: VHOG:0000648
xref: XAO:0000243
xref: ZFA:0000706
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 {source="FMA"} ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000059 {source="FMA"} ! large intestine

[Term]
id: UBERON:0001161
name: body of stomach
namespace: uberon
alt_id: UBERON:FMA_14560-MA_0002559
def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach]
comment: Note that we include this as zone of stomach even though it is not distinguished by gland type
subset: uberon_slim
synonym: "corpus gastricum" RELATED [BTO:0000505]
synonym: "corpus gastricum (ventriculare)" EXACT []
synonym: "corpus ventriculare" RELATED [BTO:0000505]
synonym: "corpus ventriculi" RELATED [BTO:0000505]
synonym: "gastric body" EXACT []
synonym: "gastric corpus" RELATED []
synonym: "stomach body" EXACT []
xref: BTO:0000505
xref: FMA:14560
xref: galen:GastricCorpus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002559
xref: ncithesaurus:Body_of_Stomach
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach

[Term]
id: UBERON:0001162
name: cardia of stomach
namespace: uberon
alt_id: UBERON:0004712
alt_id: UBERON:FMA_14561-MA_0001609
def: "The opening of the esophagus into the stomach; also: the part of the stomach adjoining this opening[BTO]. The cardia is the anatomical term for the part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]" [BTO:0000198, Wikipedia:Cardia]
comment: Editor notes: We follow Kardong in defining stomach regions by glands. Boundary notes: There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that "The gastric cardia is now clearly considered to be part of the stomach"[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP].
synonym: "antrum cardiacum" RELATED [Wikipedia:Cardia]
synonym: "cardiac orifice" RELATED [Wikipedia:Cardia]
synonym: "cardiac region" RELATED [Wikipedia:Cardia]
synonym: "cardiac sphincter" RELATED [Wikipedia:Cardia]
synonym: "cardial orifice" RELATED [Wikipedia:Cardia]
synonym: "cardial part of stomach" EXACT []
synonym: "esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "esophageal sphincter%2c lower" RELATED [Wikipedia:Cardia]
synonym: "esophageal-cardiac junction" RELATED [Wikipedia:Cardia]
synonym: "esophagogastric junction" RELATED [Wikipedia:Cardia]
synonym: "gastric cardia" EXACT []
synonym: "gastro-esophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastro-esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "gastro-oesophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastroesophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastroesophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "lower esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "pars cardiaca (gaster)" EXACT []
synonym: "pars cardiaca gastricae" EXACT [FMA:14561, FMA:TA]
synonym: "stomach cardiac region" EXACT [MA:0001609]
xref: BTO:0000198
xref: FMA:14561
xref: GAID:319
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Illu_stomach.jpg/200px-Illu_stomach.jpg
xref: MA:0001609
xref: MESH:A.03.492.766.163
xref: ncithesaurus:Cardia
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009870 ! zone of stomach
intersection_of: UBERON:0009870 ! zone of stomach
intersection_of: has_part UBERON:0008859 ! cardiac gastric gland
relationship: continuous_with UBERON:0001043 ! esophagus
relationship: continuous_with UBERON:0001161 ! body of stomach
relationship: has_part UBERON:0008859 ! cardiac gastric gland

[Term]
id: UBERON:0001165
name: pyloric antrum
namespace: uberon
alt_id: UBERON:FMA_14579-MA_0001624
def: "Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]." [Wikipedia:Pyloric_antrum]
subset: uberon_slim
synonym: "antrum of stomach" EXACT []
synonym: "antrum of Willis" RELATED [BTO:0001732]
synonym: "antrum pylori" RELATED [BTO:0001732]
synonym: "antrum pyloricum" RELATED [BTO:0001732]
synonym: "gastric antrum" RELATED [BTO:0001732]
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
xref: BTO:0001732
xref: EFO:0002555
xref: EMAPA:17891
xref: EMAPA:18919
xref: FMA:14579
xref: GAID:332
xref: galen:PyloricAntrum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001624
xref: MESH:A.03.492.766.716
xref: ncithesaurus:Antrum_Pylori
xref: SCTID:362142001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
relationship: continuous_with UBERON:0001161 ! body of stomach
relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus

[Term]
id: UBERON:0001166
name: pylorus
namespace: uberon
alt_id: UBERON:FMA_14581-MA_0002560
def: "The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]." [Wikipedia:Pylorus]
comment: Editor notes: We follow Kardong in defining stomach regions by glands
subset: uberon_slim
synonym: "pars pylorica gastricae" EXACT [FMA:14581, FMA:TA]
synonym: "pyloric part of stomach" EXACT []
synonym: "pyloric region" EXACT []
synonym: "stomach pyloric region" EXACT [EHDAA2:0001580]
xref: BTO:0001146
xref: EHDAA2:0001580
xref: EHDAA:4860
xref: EMAPA:17631
xref: EMAPA:18915
xref: FMA:14581
xref: GAID:333
xref: galen:Pylorus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002560
xref: MESH:A.03.492.766.799
xref: ncithesaurus:Pylorus
xref: SCTID:362143006
xref: VHOG:0000420
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009870 ! zone of stomach
intersection_of: UBERON:0009870 ! zone of stomach
intersection_of: has_part UBERON:0001165 ! pyloric antrum
intersection_of: has_part UBERON:0008858 ! pyloric canal
intersection_of: has_part UBERON:0008861 ! pyloric gastric gland
relationship: has_part UBERON:0001165 ! pyloric antrum
relationship: has_part UBERON:0008858 ! pyloric canal
relationship: has_part UBERON:0008861 ! pyloric gastric gland

[Term]
id: UBERON:0001167
name: wall of stomach
namespace: uberon
alt_id: UBERON:FMA_14582-MA_0002692
def: "An anatomical wall that is part of a stomach [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric wall" EXACT []
synonym: "stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "stomach wall" EXACT []
synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "ventriculus wall" EXACT [OBOL:automatic]
synonym: "wall of ventriculus" EXACT [OBOL:automatic]
xref: FMA:14582
xref: galen:WallOfStomach
xref: MA:0002692
xref: SCTID:279995000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach

[Term]
id: UBERON:0001168
name: wall of small intestine
namespace: uberon
alt_id: UBERON:FMA_14615-MA_0002696
def: "An anatomical wall that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "small bowel wall" EXACT [OBOL:automatic]
synonym: "small intestinal wall" EXACT []
synonym: "small intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "small intestine wall" EXACT []
synonym: "wall of small bowel" EXACT [OBOL:automatic]
xref: FMA:14615
xref: MA:0002696
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0001262 ! wall of intestine
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001169
name: wall of large intestine
namespace: uberon
alt_id: UBERON:FMA_14619-MA_0002695
def: "An anatomical wall that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal wall" EXACT []
synonym: "large intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "large intestine wall" EXACT []
xref: FMA:14619
xref: MA:0002695
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0001262 ! wall of intestine
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001262 ! wall of intestine

[Term]
id: UBERON:0001173
name: biliary tree
namespace: uberon
alt_id: UBERON:FMA_14665-XAO_0000455
def: "Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract]
subset: organ_slim
subset: uberon_slim
synonym: "biliary tract" EXACT []
xref: AAO:0011020
xref: FMA:14665
xref: GAID:279
xref: MA:0001273
xref: MESH:A.03.159
xref: ncithesaurus:Biliary_Tract
xref: SCTID:181267003
xref: XAO:0000455
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: part_of UBERON:0002294 ! biliary system

[Term]
id: UBERON:0001174
name: common bile duct
namespace: uberon
alt_id: UBERON:FMA_14667-MA_0001631
def: "a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct]
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus choledochus (biliaris)" EXACT []
xref: EHDAA2:0000303
xref: EHDAA:3981
xref: EMAPA:17201
xref: FMA:14667
xref: GAID:282
xref: galen:CommonBileDuct
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0001631
xref: MESH:A.03.159.183.079.300
xref: ncithesaurus:Common_Bile_Duct
xref: SCTID:362199009
xref: TAO:0005165
xref: VHOG:0000214
xref: ZFA:0005165
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003703 ! extrahepatic bile duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0001064 ! ventral pancreatic duct
relationship: continuous_with UBERON:0001152 ! cystic duct
relationship: continuous_with UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0001173 ! biliary tree

[Term]
id: UBERON:0001175
name: common hepatic duct
namespace: uberon
alt_id: UBERON:FMA_14668-ZFA_0001100
def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part
subset: uberon_slim
synonym: "hepatic duct" RELATED []
xref: EMAPA:19101
xref: FMA:14668
xref: GAID:286
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_liver_gallbladder.jpg/200px-Illu_liver_gallbladder.jpg
xref: MA:0002660
xref: MESH:A.03.159.183.079.600
xref: ncithesaurus:Common_Hepatic_Duct
xref: SCTID:245403006
xref: VHOG:0000220
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0001176 {source="Wikipedia"} ! right hepatic duct
relationship: continuous_with UBERON:0001177 {source="Wikipedia"} ! left hepatic duct
relationship: develops_from UBERON:0010081 {evidence="definitional"} ! future common hepatic duct
relationship: part_of UBERON:0005604 {source="MA"} ! hepatic duct extrahepatic part

[Term]
id: UBERON:0001176
name: right hepatic duct
namespace: uberon
alt_id: UBERON:FMA_14669-MA_0001639
def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034]
comment: This class was created automatically from a combination of ontologies
xref: EHDAA2:0001727
xref: EHDAA:3992
xref: EMAPA:18305
xref: EMAPA:19100
xref: FMA:14669
xref: MA:0001639
xref: ncithesaurus:Right_Hepatic_Duct
xref: SCTID:245401008
xref: VHOG:0000217
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003703 ! extrahepatic bile duct
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: continuous_with UBERON:0001114 ! right lobe of liver
relationship: continuous_with UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0001177
name: left hepatic duct
namespace: uberon
alt_id: UBERON:FMA_14670-MA_0001638
def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035]
xref: EHDAA2:0000941
xref: EHDAA:3990
xref: EMAPA:18304
xref: EMAPA:19099
xref: FMA:14670
xref: MA:0001638
xref: ncithesaurus:Left_Hepatic_Duct
xref: SCTID:245400009
xref: VHOG:0000218
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003703 ! extrahepatic bile duct
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: continuous_with UBERON:0001115 ! left lobe of liver
relationship: continuous_with UBERON:0001115 ! left lobe of liver
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0001179
name: peritoneal cavity
namespace: uberon
alt_id: UBERON:FMA_14704-MA_0000054
def: "Cavity of serous sac surrounded by the peritoneum.[FMA]" [FMA:FMA, Wikipedia:Peritoneal_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavitas peritonealis" RELATED [BTO:0001782]
xref: BTO:0001782
xref: EHDAA2:0001446
xref: EMAPA:18452
xref: EMAPA:18454
xref: EMAPA:18461
xref: FMA:14704
xref: GAID:24
xref: MA:0000054
xref: MESH:A.01.047.025.600.678
xref: ncithesaurus:Peritoneal_Cavity
xref: SCTID:181616008
xref: VHOG:0000852
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002323 ! body cavity
relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom
relationship: surrounded_by UBERON:0002358 ! peritoneum

[Term]
id: UBERON:0001199
name: mucosa of stomach
namespace: uberon
alt_id: UBERON:FMA_14907-MA_0002683
def: "The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]." [Wikipedia:Gastric_mucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gastric mucosa" EXACT []
synonym: "gastric mucous membrane" EXACT []
synonym: "Magenschleimhaut" RELATED [BTO:0001308]
synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic]
synonym: "mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach" EXACT []
synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach mucosa" EXACT []
synonym: "stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (gaster)" EXACT []
synonym: "tunica mucosa gastricae" EXACT [FMA:14907, FMA:TA]
synonym: "tunica mucosa gastris" RELATED [BTO:0001308]
synonym: "ventriculus mucosa" EXACT [OBOL:automatic]
synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic]
synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic]
synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic]
xref: BTO:0001308
xref: FMA:14907
xref: GAID:321
xref: galen:GastricMucosa
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_stomach2.jpg/200px-Illu_stomach2.jpg
xref: MA:0002683
xref: MESH:A.03.492.766.440
xref: ncithesaurus:Gastric_Mucosa
xref: OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA
xref: SCTID:362131005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004786 ! gastrointestinal system mucosa
is_a: UBERON:0009034 ! stomach region
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach

[Term]
id: UBERON:0001202
name: pyloric sphincter
namespace: uberon
alt_id: UBERON:FMA_14916-XAO_0000457
def: "A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]." [UBERON:cjm]
subset: uberon_slim
synonym: "pyloric valve" EXACT [Wikipedia:Pylorus]
xref: AAO:0011093
xref: EMAPA:19251
xref: FMA:14916
xref: MA:0002952
xref: ncithesaurus:Pyloric_Sphincter
xref: OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA
xref: SCTID:268073008
xref: VHOG:0001466
xref: XAO:0000457
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004590 ! sphincter muscle
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: adjacent_to UBERON:0002114 ! duodenum
relationship: continuous_with UBERON:0008858 ! pyloric canal
relationship: part_of UBERON:0001166 ! pylorus

[Term]
id: UBERON:0001203
name: muscularis mucosae of stomach
namespace: uberon
alt_id: UBERON:FMA_14924-MA_0002684
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT []
synonym: "lamina muscularis of gastric mucosa" EXACT []
synonym: "muscular coat of stomach" EXACT []
synonym: "stomach muscularis mucosa" EXACT []
synonym: "tunica muscularis gastricae" EXACT [FMA:14924, FMA:TA]
xref: FMA:14924
xref: MA:0002684
xref: SCTID:64551004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004222 ! stomach smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach

[Term]
id: UBERON:0001204
name: mucosa of small intestine
namespace: uberon
alt_id: UBERON:FMA_14933-MA_0002686
def: "A mucosa that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic]
synonym: "mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small intestine" EXACT []
synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel mucosa" EXACT [OBOL:automatic]
synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "small bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "small bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "small intestinal mucosa" EXACT []
synonym: "small intestine mucosa" EXACT []
synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "small intestine mucous membrane" EXACT []
synonym: "small intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (intestinum tenue)" EXACT []
synonym: "tunica mucosa intestini tenuis" EXACT [FMA:14933, FMA:TA]
xref: BTO:0001259
xref: FMA:14933
xref: MA:0002686
xref: ncithesaurus:Small_Intestinal_Mucosa
xref: SCTID:362144000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001242 ! intestinal mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001207
name: mucosa of large intestine
namespace: uberon
alt_id: UBERON:FMA_14969-MA_0002688
def: "A mucosa that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "large intestinal mucosa" EXACT []
synonym: "large intestine mucosa" EXACT []
synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "large intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "large intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of large intestine" EXACT []
synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic]
synonym: "tunica mucosa intestini crassi" EXACT [FMA:14969, FMA:TA]
xref: FMA:14969
xref: MA:0002688
xref: ncithesaurus:Large_Intestinal_Mucosa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001242 ! intestinal mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa

[Term]
id: UBERON:0001210
name: muscularis mucosae of small intestine
namespace: uberon
alt_id: UBERON:FMA_15051-MA_0002687
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT []
synonym: "lamina muscularis of small intestine mucous membrane" EXACT []
synonym: "small intestine muscularis mucosa" EXACT []
xref: FMA:15051
xref: MA:0002687
xref: ncithesaurus:Small_Intestinal_Muscularis_Mucosa
xref: SCTID:36401004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001240 ! muscularis mucosae of intestine
is_a: UBERON:0004239 ! small intestine smooth muscle
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0001220
name: quadratus lumborum
namespace: uberon
alt_id: UBERON:FMA_15569-MA_0002362
def: "The Quadratus lumborum is irregular and quadrilateral in shape, and broader below than above. [WP,unvetted]." [Wikipedia:Quadratus_lumborum]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "muscle of posterior abdominal wall" EXACT []
xref: EMAPA:18524
xref: FMA:15569
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray1124.png/200px-Gray1124.png
xref: MA:0002362
xref: ncithesaurus:Quadratus_Lumborum
xref: OpenCyc:Mx4rvj1wcpwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002378 ! muscle of abdomen

[Term]
id: UBERON:0001221
name: transversus abdominis
namespace: uberon
alt_id: UBERON:FMA_15570-MA_0002396
def: "The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]." [Wikipedia:Transversus_abdominis]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "musculus transversus abdominis" EXACT [FMA:15570, FMA:TA]
synonym: "transverse abdominal" EXACT []
xref: EHDAA2:0002078
xref: EHDAA:8254
xref: EMAPA:18165
xref: FMA:15570
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_trunk_muscles.jpg/200px-Illu_trunk_muscles.jpg
xref: MA:0002396
xref: ncithesaurus:Transversus_Abdominis
xref: VHOG:0000845
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002461 ! anterior abdominal wall muscle

[Term]
id: UBERON:0001224
name: renal pelvis
namespace: uberon
alt_id: UBERON:FMA_15575-MA_0000374
def: "funnel-like dilated proximal part of the ureter in the kidney." [Wikipedia:Renal_pelvis]
subset: uberon_slim
synonym: "kidney pelvis" EXACT []
synonym: "pelvis of ureter" EXACT []
xref: EMAPA:17948
xref: FMA:15575
xref: GAID:426
xref: galen:RenalPelvis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg
xref: MA:0000374
xref: MESH:A.05.810.453.537
xref: ncithesaurus:Renal_Pelvis
xref: SCTID:362221007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
disjoint_from: UBERON:0002355 ! pelvis
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0002113 ! kidney

[Term]
id: UBERON:0001239
name: muscularis mucosae of large intestine
namespace: uberon
alt_id: UBERON:FMA_15655-MA_0002689
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis of large intestine mucosa" EXACT []
synonym: "lamina muscularis of large intestine mucous membrane" EXACT []
synonym: "large intestine muscularis mucosa" EXACT []
xref: FMA:15655
xref: MA:0002689
xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001240 ! muscularis mucosae of intestine
is_a: UBERON:0004220 ! large intestine smooth muscle
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine

[Term]
id: UBERON:0001240
name: muscularis mucosae of intestine
namespace: uberon
alt_id: UBERON:FMA_15691-MA_0002694
comment: This class was created automatically from a combination of ontologies
synonym: "intestine muscularis mucosa" EXACT []
xref: FMA:15691
xref: MA:0002694
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004221 ! intestine smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa

[Term]
id: UBERON:0001242
name: intestinal mucosa
namespace: uberon
alt_id: UBERON:FMA_15695-MA_0001537
def: "The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369]
subset: uberon_slim
synonym: "bowel mucosa" EXACT [OBOL:automatic]
synonym: "bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "intestine mucosa" EXACT []
synonym: "intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of intestine" EXACT []
synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestine" EXACT [OBOL:automatic]
synonym: "organ mucosa of bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestine" EXACT [OBOL:automatic]
xref: BTO:0000642
xref: FMA:15695
xref: GAID:296
xref: MA:0001537
xref: MESH:A.03.492.411.369
xref: ncithesaurus:Intestinal_Mucosa
xref: SCTID:362080002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004786 ! gastrointestinal system mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine

[Term]
id: UBERON:0001244
name: internal anal sphincter
namespace: uberon
alt_id: UBERON:FMA_15710-MA_0001534
def: "The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]." [Wikipedia:Internal_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circular layer of anal muscularis externa" EXACT []
synonym: "circular layer of muscularis externa of anal canal" EXACT []
synonym: "circular layer of muscularis propria of anal canal" EXACT []
synonym: "circular muscle layer of anal canal" EXACT []
xref: EMAPA:18266
xref: FMA:15710
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray1079.png/200px-Gray1079.png
xref: MA:0001534
xref: ncithesaurus:Internal_Anal_Sphincter
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004916 ! anal sphincter
is_a: UBERON:0007521 ! smooth muscle sphincter
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0001245
name: anus
namespace: uberon
alt_id: UBERON:FMA_15711-MA_0000331-ZFA_0000066
def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator]
comment: Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html
subset: uberon_slim
synonym: "anal orifice" EXACT []
synonym: "proctodeum" RELATED []
xref: BTO:0001680
xref: EV:0100082
xref: FBbt:00001893
xref: FBbt:00003148
xref: FMA:15711
xref: GAID:312
xref: galen:Anus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0000331
xref: MESH:A.03.492.411.495.767.288
xref: ncithesaurus:Anus
xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA
xref: SCTID:181262009
xref: TADS:0000066
xref: TGMA:0001279
xref: WBbt:0005364
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000931 ! proctodeum
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0001255
name: urinary bladder
namespace: uberon
alt_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529
def: "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder]
comment: editor note: consider adding a 'bladder' grouping class
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "bladder" EXACT []
synonym: "excretory canal" BROAD []
xref: AAO:0000623
xref: BTO:0001418
xref: EFO:0000290
xref: EHDAA2:0000174
xref: EHDAA:9328
xref: EMAPA:18321
xref: EV:0100098
xref: FMA:15900
xref: GAID:0000004
xref: galen:UrinaryBladder
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png
xref: MA:0000380
xref: MAT:0000122
xref: MESH:A.05.810.161
xref: MIAA:0000122
xref: ncithesaurus:Bladder
xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA
xref: SCTID:302512001
xref: VHOG:0000740
xref: XAO:0000154
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0000164 ! primitive urogenital sinus
relationship: part_of UBERON:0001556 ! lower urinary tract
relationship: part_of UBERON:0002323 ! body cavity

[Term]
id: UBERON:0001256
name: wall of urinary bladder
namespace: uberon
alt_id: UBERON:FMA_15902-MA_0002493
def: "An anatomical wall that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of bladder" EXACT [OBOL:automatic]
synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic]
synonym: "bladder anatomical wall" EXACT [OBOL:automatic]
synonym: "bladder wall" EXACT [OBOL:automatic]
synonym: "urinary bladder anatomical wall" EXACT [OBOL:automatic]
synonym: "urinary bladder wall" EXACT []
synonym: "wall of bladder" EXACT [OBOL:automatic]
xref: BTO:0001462
xref: FMA:15902
xref: MA:0002493
xref: ncithesaurus:Bladder_Wall
xref: SCTID:362225003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder

[Term]
id: UBERON:0001257
name: trigone of urinary bladder
namespace: uberon
alt_id: UBERON:FMA_15910-MA_0002492
def: "The trigone is a smooth triangular region of the internal urinary bladder formed by the two ureteral orifices and the internal urethral orifice. The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill. Embryologically, the trigone of the Bladder is derived from the caudal end of mesonephric ducts. In the Female the mesonephric ducts break down but, thus, the Trigone of the Bladder is less prominent but, still present. [WP,unvetted]." [Wikipedia:Trigone_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "deep trigone" EXACT []
synonym: "Lieutaud's trigone" EXACT []
synonym: "musculus trigoni vesicae profundus" EXACT [FMA:15910, FMA:TA]
synonym: "trigone of bladder" EXACT []
synonym: "trigonum vesicae" EXACT [FMA:15910, FMA:TA]
synonym: "urinary bladder trigone" EXACT []
synonym: "vesical trigone" EXACT []
xref: FMA:15910
xref: galen:TrigoneOfUrinaryBladder
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg
xref: MA:0002492
xref: ncithesaurus:Bladder_Trigone
xref: SCTID:272663002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255 ! urinary bladder

[Term]
id: UBERON:0001258
name: neck of urinary bladder
namespace: uberon
alt_id: UBERON:FMA_15912-MA_0002491
def: "The neck of the urinary bladder is the portion of the urinary bladder adjacent to the prostate gland in men. [WP,unvetted]." [Wikipedia:Neck_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bladder neck" EXACT []
synonym: "cervix vesicae" EXACT [FMA:15912, FMA:TA]
synonym: "collum vesicae" EXACT [FMA:15912, FMA:TA]
synonym: "neck of bladder" EXACT []
synonym: "urinary bladder neck" EXACT []
synonym: "vesical neck" EXACT []
xref: FMA:15912
xref: galen:UrinaryBladderNeck
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png
xref: MA:0002491
xref: ncithesaurus:Bladder_Neck
xref: SCTID:362227006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255 ! urinary bladder

[Term]
id: UBERON:0001259
name: mucosa of urinary bladder
namespace: uberon
alt_id: UBERON:FMA_15928-MA_0001692
def: "A mucosa that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bladder mucosa" EXACT []
synonym: "bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of bladder" EXACT []
synonym: "mucous membrane of urinary bladder" EXACT []
synonym: "organ mucosa of bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of urinary bladder" EXACT [OBOL:automatic]
synonym: "tunica mucosa (vesica urinaria)" EXACT [FMA:15928, FMA:TA]
synonym: "tunica mucosa vesicae" EXACT [FMA:15928, FMA:TA]
synonym: "urinary bladder mucosa" EXACT []
synonym: "urinary bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "urinary bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "urinary bladder organ mucosa" EXACT [OBOL:automatic]
xref: EFO:0000293
xref: FMA:15928
xref: galen:MucousMembraneOfUrinaryBladder
xref: MA:0001692
xref: ncithesaurus:Bladder_Mucosa
xref: SCTID:362224004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001256 ! wall of urinary bladder

[Term]
id: UBERON:0001261
name: lamina propria of urinary bladder
namespace: uberon
alt_id: UBERON:FMA_15935-MA_0001695
def: "A lamina propria that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bladder lamina propria" EXACT [OBOL:automatic]
synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of urinary bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of urinary bladder" EXACT [OBOL:automatic]
synonym: "lamina propria of bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder lamina propria" EXACT []
synonym: "urinary bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder lamina propria mucosae" EXACT [OBOL:automatic]
xref: EMAPA:30088
xref: FMA:15935
xref: MA:0001695
xref: ncithesaurus:Bladder_Lamina_Propria
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001259 ! mucosa of urinary bladder

[Term]
id: UBERON:0001262
name: wall of intestine
namespace: uberon
alt_id: UBERON:FMA_15949-MA_0002693
def: "An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "bowel wall" EXACT [OBOL:automatic]
synonym: "intestinal wall" EXACT []
synonym: "intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "intestine wall" EXACT []
synonym: "wall of bowel" EXACT [OBOL:automatic]
xref: BTO:0000647
xref: FMA:15949
xref: MA:0002693
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0001264
name: pancreas
namespace: uberon
alt_id: UBERON:FMA_16017-FMA_16018-FMA_7198-MA_0000120-MA_0001582-MA_0002415-MIAA_0000075-XAO_0000136-XAO_0000137-ZFA_0000140-ZFA_0001249-ZFA_0001260
def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1–2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans[PMID]." [GO:0031016, PMID:16417468, Wikipedia:Pancreas]
comment: taxon notes: As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] Hagfishes and lampreys are unique in the complete separation of their endocrine pancreas (islet or- gan) and their exocrine pancreas (50). The endocrine and exocrine pancreas are coassociated in crown gnathostomes (50). In Branchiostoma and Ciona, there is no diverticulum as there is in hagfishes, lampreys, and gnathostomes, only dispersed insulin-secreting cells in the walls of the gastrointestinal tract (51, 52) [PMID:20959416]
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010112
xref: BTO:0000988
xref: EFO:0000855
xref: EHDAA2:0001367
xref: EHDAA:6893
xref: EMAPA:17503
xref: EMAPA:18816
xref: EV:0100092
xref: FMA:7198
xref: GAID:334
xref: galen:Pancreas
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Illu_pancrease.svg/200px-Illu_pancrease.svg.png
xref: MA:0000120
xref: MAT:0000075
xref: MESH:A.03.734
xref: MIAA:0000075
xref: ncithesaurus:Pancreas
xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA
xref: SCTID:181277001
xref: TAO:0000140
xref: VHOG:0000050
xref: XAO:0000136
xref: ZFA:0000140
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002075 ! viscus
relationship: has_developmental_contribution_from UBERON:0003922 ! pancreatic bud
relationship: has_developmental_contribution_from UBERON:0003923 {source="Wikipedia"} ! dorsal pancreatic bud
relationship: has_developmental_contribution_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud
relationship: part_of UBERON:0000949 ! endocrine system

[Term]
id: UBERON:0001269
name: acetabular part of hip bone
namespace: uberon
alt_id: UBERON:FMA_16579-MA_0001335
def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]." [Wikipedia:Acetabulum]
comment: In reptiles and in birds, the acetabula are deep sockets.[WP] Note that whilst WP defines this as a surface, MA treats it as a bone. There are other FMA classes that may be better suited to representing the surface.
subset: uberon_slim
synonym: "acetabulum" EXACT []
xref: AAO:0000770
xref: EHDAA:10661
xref: FMA:16579
xref: GAID:206
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg
xref: MA:0001335
xref: MESH:A.02.835.232.611.108
xref: ncithesaurus:Acetabulum
xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001427
xref: SCTID:182027007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint

[Term]
id: UBERON:0001270
name: bony pelvis
namespace: uberon
alt_id: UBERON:FMA_16580-MA_0000532
def: "In humans, the ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls." [http://medical-dictionary.thefreedictionary.com/bony+pelvis]
comment: in FMA, this is part of the axial skeletal system. todo: add taxon-specific part of relations connecting sub-structures to this.
xref: FMA:16580
xref: SCTID:46633002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
disjoint_from: UBERON:0002355 ! pelvis

[Term]
id: UBERON:0001271
name: pelvic girdle region
namespace: uberon
alt_id: UBERON:FMA_16581-MA_0000293-MIAA_0000182-XAO_0003064-ZFA_0000565
def: "Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]." [FMA:16581, http://onlinelibrary.wiley.com/doi/10.1002/dvdy.22617/full, https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion]
comment: Note that this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). See also comments on obo-anatomy mail list
subset: uberon_slim
subset: vertebrate_core
synonym: "girdle - pelvic" RELATED []
synonym: "pelvic girdle" RELATED INCONSISTENT []
xref: FMA:16581
xref: ncithesaurus:Pelvic_Girdle
xref: SCTID:360010001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007823 ! appendage girdle region
intersection_of: UBERON:0007823 ! appendage girdle region
intersection_of: part_of UBERON:0000154 ! posterior region of body
disjoint_from: UBERON:0007832 ! skeleton of pelvic girdle
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0001272
name: pelvic bone
namespace: uberon
alt_id: UBERON:FMA_16585-ZFA_0000623
def: "The hip bone, innominate bone or coxal bone is a large, flattened, irregularly shaped bone, constricted in the center and expanded above and below. It has one of the few ball and socket synovial joints in the body – the so called hip joint. It meets its fellow on the opposite side in the middle line in front, and together they form the sides and anterior wall of the pelvic cavity. Together with the sacrum and coccyx, it comprises the pelvis. [WP,unvetted]." [Wikipedia:Hip_bone]
comment: The hip bone first appears in fishes, where it consists of a simple, usually triangular bone, to which the pelvic fin articulates. The hip bones on each side usually connect with each other at the forward end, and are even solidly fused in lungfishes and sharks, but they never attach to the vertebral column[WP]
subset: uberon_slim
synonym: "basipterygium" RELATED []
synonym: "bone of pelvic girdle" EXACT []
synonym: "coxal bone" EXACT []
synonym: "hip bone" EXACT []
synonym: "innominate bone" EXACT []
synonym: "os coxae" EXACT [FMA:16585, FMA:TA]
xref: FMA:16585
xref: GAID:205
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png
xref: MESH:A.02.835.232.611
xref: ncithesaurus:Pelvic_Bone
xref: SCTID:361776002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007830 ! pelvic girdle bone/zone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0001464 {source="FMA"} ! hip
relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle

[Term]
id: UBERON:0001273
name: ilium
namespace: uberon
alt_id: UBERON:FMA_16589-MA_0001336
def: "The ilium is the uppermost and largest bone of the pelvis, and appears in most vertebrates including mammals and birds, but not bony fish." [Wikipedia:Ilium_(bone)]
comment: Note that this is_a hip bone in MA. Taxon notes: All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium[WP]
subset: uberon_slim
synonym: "os iliacum" EXACT []
synonym: "os ilii" EXACT []
xref: AAO:0000772
xref: EFO:0003049
xref: FMA:16589
xref: GAID:207
xref: galen:Ilium
xref: MA:0001336
xref: MESH:A.02.835.232.611.434
xref: ncithesaurus:Ilium
xref: OpenCyc:Mx4rvhwFJ5wpEbGdrcN5Y29ycA
xref: SCTID:182029005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: develops_from UBERON:0010714 {source="cjm"} ! iliac cartilage condensation
relationship: part_of UBERON:0001272 {source="FMA"} ! pelvic bone
relationship: part_of UBERON:0007832 {source="VAO"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0001274
name: ischium
namespace: uberon
alt_id: UBERON:FMA_16592-MA_0001337
def: "Endochondral bone that is paired, forming the posterior part of the pelvis, articulating with the pubis and ilium." [VAO:0005006, VAO:NI, Wikipedia:Ischium]
comment: Note that this is_a hip bone in MA; in FMA it is a zone of bone organ.
subset: uberon_slim
synonym: "os ischii" RELATED [AAO:0000860]
xref: AAO:0000860
xref: FMA:16592
xref: GAID:208
xref: galen:Ischium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg
xref: MA:0001337
xref: MESH:A.02.835.232.611.548
xref: ncithesaurus:Ischium
xref: OpenCyc:Mx4rvlzMKpwpEbGdrcN5Y29ycA
xref: SCTID:182025004
xref: VAO:0005006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 {source="VAO"} ! endochondral bone
is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: develops_from UBERON:0006254 {source="cjm"} ! ischial cartilage condensation
relationship: part_of UBERON:0001272 ! pelvic bone
relationship: part_of UBERON:0007832 {source="VAO"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0001275
name: pubis
namespace: uberon
alt_id: UBERON:FMA_16595-MA_0001338
def: "the ventral and anterior of the three principal bones composing either half of the pelvis. it is covered by a layer of fat, which is covered by the mons pubis. It is divisible into a body, a superior ramus and an inferior ramus. The body forms one-fifth of the acetabulum, contributing by its external surface both to the lunate surface and the acetabular fossa. Its internal surface enters into the formation of the wall of the lesser pelvis and gives origin to a portion of the obturator internus. In the female, the pubic bone is anterior to the urethral sponge. The left and right hip bones join at the pubic symphysis. The pubis is the lower limit of the suprapubic region[WP]." [Wikipedia:Pubis_(bone)]
comment: AO notes: isa bone zone in FMA
subset: uberon_slim
synonym: "os pubis" RELATED [Wikipedia:Pubis_%28bone%29]
synonym: "pubic bone" RELATED [Wikipedia:Pubis_%28bone%29]
synonym: "pubis bone" RELATED [Wikipedia:Pubis_%28bone%29]
xref: AAO:0000861
xref: EMAPA:18728
xref: FMA:16595
xref: galen:Pubis
xref: MA:0001338
xref: MESH:A.02.835.232.611.781
xref: ncithesaurus:Pubic_Bone
xref: SCTID:182035005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 {source="VAO"} ! endochondral bone
is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: develops_from UBERON:0010718 ! pubic cartilage condensation
relationship: part_of UBERON:0001272 {source="FMA"} ! pelvic bone
relationship: part_of UBERON:0007832 {source="VAO"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0001276
name: epithelium of stomach
namespace: uberon
alt_id: UBERON:FMA_17091-MA_0001610
def: "the epithelial layer of the stomach ." [MP:0000471]
comment: in FMA this is classified as simple columnar, MA divides this into squamous and glandular
synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "epithelium of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric epithelium" RELATED [BTO:0000500]
synonym: "stomach epithelial tissue" EXACT [OBOL:automatic]
synonym: "stomach epithelium" EXACT [OBOL:automatic]
synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic]
synonym: "ventriculus epithelium" EXACT [OBOL:automatic]
xref: BTO:0000500
xref: EHDAA2:0001918
xref: FMA:17091
xref: MA:0001610
xref: SCTID:64977002
xref: VHOG:0001433
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004808 ! gastrointestinal system epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach

[Term]
id: UBERON:0001295
name: endometrium
namespace: uberon
alt_id: UBERON:FMA_17742-MA_0000390-MIAA_0000319
def: "inner membrane of the mammalian uterus." [Wikipedia:Endometrium]
comment: AO notes: in FMA this is subdivided into basal and outer. In MA there is a single child term, endometrium epithelium
subset: uberon_slim
synonym: "tunica mucosa (endometrium)" EXACT []
xref: BTO:0001422
xref: EFO:0000980
xref: EMAPA:29917
xref: EV:0100115
xref: FMA:17742
xref: GAID:377
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0000390
xref: MAT:0000319
xref: MESH:A.05.360.319.679.490
xref: MIAA:0000319
xref: ncithesaurus:Endometrium
xref: SCTID:278867007
xref: VHOG:0001285
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004923 ! organ component layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus

[Term]
id: UBERON:0001296
name: myometrium
namespace: uberon
alt_id: UBERON:FMA_17743-MA_0000391
def: "middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue." [http://en.wikipedia.org/wiki/Myometrium, Wikipedia:Myometrium]
comment: The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss.
subset: uberon_slim
synonym: "tunica muscularis (myometrium)" EXACT []
synonym: "uterine smooth muscle" RELATED []
xref: BTO:0000907
xref: EFO:0001970
xref: EMAPA:29923
xref: EV:0100116
xref: FMA:17743
xref: GAID:171
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0000391
xref: MESH:A.02.633.570.500
xref: MeSH:D009215
xref: ncithesaurus:Myometrium
xref: SCTID:279879004
xref: VHOG:0001281
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004923 ! organ component layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus
relationship: surrounded_by UBERON:0001297 ! serosa of uterus
relationship: surrounds UBERON:0001295 ! endometrium

[Term]
id: UBERON:0001297
name: serosa of uterus
namespace: uberon
alt_id: UBERON:FMA_17744-MA_0001729
def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium]
comment: TODO - check for parallel structure with peritoneum
synonym: "perimetrium" EXACT [http://en.wikipedia.org/wiki/Perimetrium]
synonym: "serous coat of uterus" EXACT []
synonym: "serous membrane of uterus" EXACT [OBOL:automatic]
synonym: "tunica serosa (perimetrium)" EXACT []
synonym: "tunica serosa uteri" EXACT [FMA:17744, FMA:TA]
synonym: "uterine serosa" EXACT []
synonym: "uterus serosa" EXACT []
synonym: "uterus serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of uterus" EXACT []
xref: FMA:17744
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0001729
xref: ncithesaurus:Perimetrium
xref: SCTID:253705006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus

[Term]
id: UBERON:0001298
name: psoas major
namespace: uberon
alt_id: UBERON:FMA_18060-MA_0002358
def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [Wikipedia:Psoas_major]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "psoas major muscle" EXACT []
xref: BTO:0001877
xref: EMAPA:18169
xref: FMA:18060
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002358
xref: ncithesaurus:Psoas_Major
xref: OpenCyc:Mx4rwU5ZfZwpEbGdrcN5Y29ycA
xref: SCTID:244952006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008450 {source="MA"} ! psoas
relationship: part_of UBERON:0000475 ! organism subdivision

[Term]
id: UBERON:0001301
name: epididymis
namespace: uberon
alt_id: UBERON:FMA_18255-MA_0000397-MIAA_0000130
def: "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis]
comment: Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells.
subset: uberon_slim
synonym: "epididymus" EXACT []
xref: BTO:0000408
xref: EFO:0000982
xref: EMAPA:19290
xref: EV:0100103
xref: FMA:18255
xref: GAID:397
xref: galen:Epididymis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg
xref: MA:0000397
xref: MAT:0000130
xref: MESH:A.05.360.444.849.286
xref: MIAA:0000130
xref: ncithesaurus:Epididymis
xref: SCTID:181432000
xref: VHOG:0001265
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channels_from UBERON:0006946 ! efferent duct
relationship: channels_into UBERON:0001000 ! vas deferens
relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct
relationship: part_of UBERON:0006947 {source="FMA"} ! male genital duct

[Term]
id: UBERON:0001315
name: superior gluteal artery
namespace: uberon
alt_id: UBERON:FMA_18868-MA_0002054
def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [Wikipedia:Superior_gluteal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria glutealis superior" EXACT []
xref: FMA:18868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png
xref: MA:0002054
xref: ncithesaurus:Gluteal_Artery
xref: SCTID:181354004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001015 ! musculature

[Term]
id: UBERON:0001325
name: muscle of pelvis
namespace: uberon
alt_id: UBERON:FMA_19086-MA_0000534
def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," [FMA:19086]
subset: uberon_slim
synonym: "muscle organ of pelvis" EXACT [OBOL:automatic]
synonym: "pelvic muscle" EXACT [FMA:19086]
synonym: "pelvis muscle" EXACT []
synonym: "pelvis muscle organ" EXACT [OBOL:automatic]
xref: FMA:19086
xref: MA:0000534
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle
is_a: UBERON:0005179 ! pelvis organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis

[Term]
id: UBERON:0001326
name: levator ani
namespace: uberon
alt_id: UBERON:FMA_19087-MA_0002332
def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [Wikipedia:Levator_ani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EMAPA:19165
xref: FMA:19087
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png
xref: MA:0002332
xref: ncithesaurus:Levator_Ani
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001325 ! muscle of pelvis

[Term]
id: UBERON:0001327
name: coccygeus
namespace: uberon
alt_id: UBERON:FMA_19088-MA_0002277
def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [Wikipedia:Coccygeus]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "ischiococcygeus" EXACT []
synonym: "musculus ischiococcygeus" EXACT [FMA:19088, FMA:TA]
xref: FMA:19088
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png
xref: MA:0002277
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001325 ! muscle of pelvis

[Term]
id: UBERON:0001339
name: ischiocavernosus
namespace: uberon
alt_id: UBERON:FMA_19730-MA_0002330
def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [Wikipedia:Ischiocavernosus]
comment: todo - add part_of relationships
subset: organ_slim
subset: uberon_slim
xref: FMA:19730
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Ischiocavernosus-female.png/200px-Ischiocavernosus-female.png
xref: MA:0002330
xref: ncithesaurus:Ischiocavernosus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002379 ! perineal muscle

[Term]
id: UBERON:0001343
name: seminiferous tubule of testis
namespace: uberon
alt_id: UBERON:FMA_19825-XAO_0003088
def: "Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]." [Wikipedia:Seminiferous_tubule]
subset: uberon_slim
synonym: "seminiferous cord" EXACT [EMAPA:18685]
synonym: "seminiferous tubule" EXACT []
synonym: "testis - seminiferous tubule" EXACT []
synonym: "tubuli seminiferi" EXACT []
xref: AAO:0010399
xref: BTO:0001235
xref: EFO:0001404
xref: EMAPA:18685
xref: EMAPA:31476
xref: EV:0100380
xref: FMA:19825
xref: GAID:400
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6a/Gray1145.png/200px-Gray1145.png
xref: MA:0000412
xref: MAT:0000503
xref: MESH:A.05.360.444.849.700
xref: ncithesaurus:Seminiferous_Cord
xref: ncithesaurus:Seminiferous_Tubule
xref: SCTID:279614002
xref: VHOG:0001363
xref: XAO:0003088
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channels_into UBERON:0003959 ! rete testis
relationship: develops_from UBERON:0005297 {source="Wikipedia"} ! testis sex cord
relationship: part_of UBERON:0000473 ! testis

[Term]
id: UBERON:0001349
name: vestibule
namespace: uberon
alt_id: UBERON:FMA_20192-XAO_0000199
def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA]" [FMA:20192, FMA:FMA, Wikipedia:Vestibule_(disambiguation)#Anatomy]
subset: uberon_slim
xref: AAO:0000984
xref: EV:0100366
xref: FMA:20192
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
disjoint_from: UBERON:0005236 ! osseus labyrinth vestibule

[Term]
id: UBERON:0001350
name: coccyx
namespace: uberon
alt_id: UBERON:FMA_20229-MA_0000696
def: "A collection of caudal vertebrae in the coccygeal region - may be fused[cjm]." [UBERON:cjm, Wikipedia:Coccyx]
comment: In MA the subclass hierarchy is cocc V is_a caud V is_a tail bone. Taxon notes: In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx. The term coccyx comes originally from the Greek language and means 'cuckoo', referring to the curved shape of a cuckoo's beak when viewed from the side. [WP,unvetted].
subset: organ_slim
subset: uberon_slim
synonym: "coccygeal skeleton" EXACT [EHDAA2:0000259]
synonym: "coccygeal vertebrae I-IV" EXACT [FMA:20229]
synonym: "coccyx [coccygeal vertebrae i-iv]" EXACT [FMA:20229]
synonym: "coccyx [vertebrae coccygeae i-iv]" EXACT [FMA:20229, FMA:TA]
synonym: "os coccygis" EXACT [FMA:20229, FMA:TA]
synonym: "tailbone" RELATED SENSU [FMA:20229]
xref: AAO:0000731
xref: EHDAA2:0000259
xref: FMA:20229
xref: GAID:239
xref: galen:Coccyx
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray100.png/200px-Gray100.png
xref: MESH:A.02.835.232.834.229
xref: ncithesaurus:Coccyx
xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA
xref: SCTID:182028002
property_value: "has_fused_element" UBERON:0006070
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis

[Term]
id: UBERON:0001352
name: external acoustic meatus
namespace: uberon
alt_id: UBERON:FMA_20290-MA_0000260
def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus]
comment: AO notes: subdivision of head in FMA. Editor note: consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct. Development notes: tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469]
subset: uberon_slim
synonym: "auditory canal" EXACT []
synonym: "auditory meatus" RELATED [EHDAA2:0000460]
synonym: "ear canal" EXACT [Wikipedia:Ear_canal]
synonym: "external acoustic tube" EXACT [FMA:61734]
synonym: "external auditory canal" EXACT []
synonym: "external auditory meatus" RELATED []
synonym: "external auditory tube" EXACT [FMA:61734]
xref: EHDAA2:0000460
xref: EHDAA:8975
xref: EMAPA:17588
xref: EV:0100356
xref: FMA:61734
xref: GAID:864
xref: galen:ExternalAuditoryMeatus
xref: MA:0000260
xref: MESH:A.09.246.272.396
xref: ncithesaurus:External_Acoustic_Meatus
xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA
xref: SCTID:181178004
xref: VHOG:0000977
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005872 {source="PMID:11237469"} ! 1st arch pharyngeal cleft
relationship: part_of UBERON:0001691 {source="FMA"} ! external ear
relationship: surrounded_by UBERON:0010065 {source="EHDAA2"} ! auditory meatus epithelium

[Term]
id: UBERON:0001353
name: anal region
namespace: uberon
alt_id: UBERON:FMA_20347-MA_0000329
subset: uberon_slim
xref: EFO:0000847
xref: EHDAA2:0000122
xref: EHDAA:2931
xref: EMAPA:16831
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray408.png/200px-Gray408.png
xref: MA:0000329
xref: MAT:0000042
xref: MIAA:0000042
xref: ncithesaurus:Anal_Region
xref: SCTID:362680001
xref: VHOG:0000395
xref: WBbt:0006919
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0000931 {evidence="definitional"} ! proctodeum
relationship: part_of UBERON:0006866 ! terminal part of digestive tract

[Term]
id: UBERON:0001365
name: sacro-iliac joint
namespace: uberon
alt_id: UBERON:FMA_21440-MA_0001506
def: "." [Wikipedia:Sacro-iliac_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio sacro-iliaca" EXACT []
synonym: "sacroiliac joint" EXACT []
xref: EMAPA:19300
xref: FMA:21440
xref: GAID:268
xref: MA:0001506
xref: MESH:A.02.835.583.707
xref: ncithesaurus:Sacroiliac_Joint
xref: SCTID:182199004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint

[Term]
id: UBERON:0001367
name: external anal sphincter
namespace: uberon
alt_id: UBERON:FMA_21930-MA_0001531
def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:External_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external sphincter ani" EXACT []
synonym: "sphincter ani externus" RELATED []
xref: EMAPA:18265
xref: FMA:21930
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0001531
xref: ncithesaurus:External_Anal_Sphincter
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004916 ! anal sphincter
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0001368
name: obturator externus
namespace: uberon
alt_id: UBERON:FMA_22299-MA_0002347
def: "The obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,unvetted]." [Wikipedia:Obturator_externus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external obturator" EXACT []
xref: FMA:22299
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Posterior_Hip_Muscles_1.PNG/200px-Posterior_Hip_Muscles_1.PNG
xref: MA:0002347
xref: SCTID:245026009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002000 ! gluteal muscle

[Term]
id: UBERON:0001369
name: iliacus
namespace: uberon
alt_id: UBERON:FMA_22310-MA_0002318
def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [Wikipedia:Iliacus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior muscle of pelvic girdle" EXACT []
synonym: "iliacus muscle" RELATED [Wikipedia:Iliacus_muscle]
xref: EMAPA:19164
xref: FMA:22310
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002318
xref: ncithesaurus:Iliacus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle

[Term]
id: UBERON:0001370
name: gluteus maximus
namespace: uberon
alt_id: UBERON:FMA_22314-MA_0002309
def: "The gluteus maximus (or glutæus maximus) is the largest and most superficial of the three gluteal muscles. It makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. [WP,unvetted]." [Wikipedia:Gluteus_maximus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "glutaeus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle]
synonym: "gluteus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle]
synonym: "gluteus superficialis" RELATED []
synonym: "m.gluteus maximus" EXACT []
xref: EMAPA:18527
xref: FMA:22314
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG
xref: MA:0002309
xref: ncithesaurus:Gluteus_Maximus
xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002000 ! gluteal muscle
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle

[Term]
id: UBERON:0001371
name: gluteus medius
namespace: uberon
alt_id: UBERON:FMA_22315-MA_0002310
def: "The gluteus medius (or glutæus medius), one of the three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [Wikipedia:Gluteus_medius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gluteus medius muscle" RELATED [Wikipedia:Gluteus_medius_muscle]
synonym: "musculus gluteus medius" RELATED [Wikipedia:Gluteus_medius_muscle]
xref: EMAPA:19163
xref: FMA:22315
xref: galen:GluteusMedius
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG
xref: MA:0002310
xref: ncithesaurus:Gluteus_Medius
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002000 ! gluteal muscle
relationship: attached_to UBERON:0002503 {source="FMA"} ! greater trochanter
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle

[Term]
id: UBERON:0001372
name: psoas minor
namespace: uberon
alt_id: UBERON:FMA_22350-MA_0002359
def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. It is absent in 40% of individuals. [WP,unvetted]." [Wikipedia:Psoas_minor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "psoas minor muscle" EXACT []
xref: BTO:0001878
xref: EMAPA:18170
xref: FMA:22350
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray430.png/200px-Gray430.png
xref: MA:0002359
xref: ncithesaurus:Psoas_Minor
xref: SCTID:244954007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008450 {source="MA"} ! psoas

[Term]
id: UBERON:0001373
name: sartorius
namespace: uberon
alt_id: UBERON:FMA_22353-MA_0002368
def: "." [Wikipedia:Sartorius]
comment: Taxon notes (via VHOG): "The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius." Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.391 [VHOG:0001192]
subset: uberon_slim
synonym: "sartorius muscle" EXACT []
xref: BTO:0001215
xref: EHDAA2:0001776
xref: EHDAA:10583
xref: FMA:22353
xref: galen:Sartorius
xref: MA:0002368
xref: ncithesaurus:Sartorius_Muscle
xref: VHOG:0001192
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001374
name: biceps femoris
namespace: uberon
alt_id: UBERON:FMA_22356-MA_0002270
def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle]
subset: uberon_slim
synonym: "biceps femoris muscle" EXACT [BTO:0003418]
xref: BTO:0003418
xref: EFO:0001418
xref: FMA:22356
xref: galen:BicepsFemoris
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG
xref: MA:0002270
xref: ncithesaurus:Biceps_Femoris
xref: SCTID:181672002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 {source="MA"} ! muscle organ
is_a: UBERON:0004252 ! hindlimb stylopod muscle
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0001375
name: semitendinosus
namespace: uberon
alt_id: UBERON:FMA_22357-MA_0002375
def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [Wikipedia:Semitendinosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus semitendinosus" RELATED [BTO:0001236]
synonym: "semitendinosus muscle" EXACT []
xref: BTO:0001236
xref: FMA:22357
xref: galen:Semitendinosus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Semitendinosus_muscle.PNG/200px-Semitendinosus_muscle.PNG
xref: MA:0002375
xref: ncithesaurus:Semitendinosus
xref: SCTID:181685004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0001376
name: tensor fasciae latae
namespace: uberon
alt_id: UBERON:FMA_22423-MA_0002391
def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [Wikipedia:Tensor_fasciae_latae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus tensor fasciae latae" EXACT [FMA:22423, FMA:TA]
synonym: "tensor fasciae lata" EXACT []
synonym: "tensor of fascia lata" EXACT []
xref: FMA:22423
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002391
xref: ncithesaurus:Tensor_Fasciae_Lata
xref: SCTID:181671009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002000 ! gluteal muscle

[Term]
id: UBERON:0001377
name: quadriceps femoris
namespace: uberon
alt_id: UBERON:FMA_22428-MA_0002363
def: "The quadriceps femoris, also called simply the quadriceps, quadriceps extensor, quads, is a large muscle group that includes the four prevailing muscles on the front of the thigh. It is the great extensor muscle of the knee, forming a large fleshy mass which covers the front and sides of the femur. It is the strongest and leanest muscle in the human body. It is subdivided into four separate portions or 'heads', which have received distinctive names: Rectus femoris occupies the middle of the thigh, covering most of the other three quadriceps muscles. It originates on the ilium. It is named from its straight course. The other three lie deep to rectus femoris and originate from the body of the femur, which they cover from the trochanters to the condyles: Vastus lateralis is on the lateral side of the femur (i.e. on the outer side of the thigh). Vastus medialis is on the medial side of the femur (i.e. on the inner part thigh). Vastus intermedius lies between vastus lateralis and vastus medialis on the front of the femur (i.e. on the top or front of the thigh). All four parts of the quadriceps muscle attach to the patella (knee cap) via the quadriceps tendon. The quadriceps is also involved in Lombard's Paradox. The proper plural form of the adjective quadriceps is quadricipes, a form not in general use; instead, quadriceps is used in both singular and plural (i.e. , when referring to both legs). The form quadricep &#91;sic&#93;, though common even in professional contexts, is incorrect. The error may derive from a mistaken belief that quadriceps is a plural noun (rather than an adjective in the singular), since English typically forms its plurals with the addition of the letter s to the end of a word stem. [WP,unvetted]." [Wikipedia:Quadriceps_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus quadriceps femoris" RELATED [BTO:0001149]
synonym: "quadricep muscle" RELATED [BTO:0001149]
synonym: "quadriceps" EXACT []
synonym: "quadriceps muscle" RELATED [BTO:0001149]
synonym: "quadriceps muscle of the thigh" RELATED [BTO:0001149]
synonym: "quadriceps muscle of thigh" RELATED [BTO:0001149]
xref: BTO:0001149
xref: EFO:0001938
xref: EHDAA2:0001583
xref: EHDAA:8299
xref: EMAPA:19073
xref: EMAPA:19146
xref: FMA:22428
xref: galen:QuadricepsFemoris
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002363
xref: ncithesaurus:Quadriceps_Muscle_of_the_Thigh
xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA
xref: VHOG:0000828
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0001378
name: rectus femoris
namespace: uberon
alt_id: UBERON:FMA_22430-MA_0002365
def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [Wikipedia:Rectus_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus rectos femoris" EXACT []
xref: BTO:0001564
xref: FMA:22430
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Rectus_femoris.png/200px-Rectus_femoris.png
xref: MA:0002365
xref: ncithesaurus:Rectus_Femoris
xref: SCTID:181679006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris

[Term]
id: UBERON:0001379
name: vastus lateralis
namespace: uberon
alt_id: UBERON:FMA_22431-MA_0002402
def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [Wikipedia:Vastus_lateralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateralis" BROAD []
synonym: "vastus externus" RELATED [BTO:0001563]
xref: BTO:0001563
xref: EFO:0001937
xref: FMA:22431
xref: galen:VastusLateralis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002402
xref: ncithesaurus:Vastus_Lateralis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris

[Term]
id: UBERON:0001380
name: vastus medialis
namespace: uberon
alt_id: UBERON:FMA_22432-MA_0002403
def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [Wikipedia:Vastus_medialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medialis" BROAD []
xref: BTO:0004913
xref: FMA:22432
xref: galen:VastusMedialis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Vastus_medialis.png/200px-Vastus_medialis.png
xref: MA:0002403
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris

[Term]
id: UBERON:0001381
name: semimembranosus
namespace: uberon
alt_id: UBERON:FMA_22438-MA_0002371
def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [Wikipedia:Semimembranosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus semimembranosus" RELATED [BTO:0003177]
xref: BTO:0003177
xref: FMA:22438
xref: galen:Semimembranosus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Semimembranosus_muscle.PNG/200px-Semimembranosus_muscle.PNG
xref: MA:0002371
xref: ncithesaurus:Semimembranosus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0001382
name: pectineus
namespace: uberon
alt_id: UBERON:FMA_22440-MA_0002353
def: "The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,unvetted]." [Wikipedia:Pectineus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22440
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002353
xref: ncithesaurus:Pectineus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0001383
name: muscle of leg
namespace: uberon
alt_id: UBERON:FMA_22471-MA_0000672
def: "." [Wikipedia:Leg_muscle]
comment: Terminology notes: see notes on UBERON:0000978 for possible confusion over the term 'leg'.
subset: uberon_slim
synonym: "leg muscle" EXACT []
synonym: "leg muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of hindlimb zeugopod or stylopod" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "muscle of upper/lower leg" EXACT []
synonym: "muscle organ of leg" EXACT [OBOL:automatic]
xref: BTO:0000722
xref: MA:0000672
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003663 ! hindlimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0001385
name: tibialis anterior
namespace: uberon
alt_id: UBERON:FMA_22532-MA_0002395
def: "In human anatomy, the tibialis anterior is a muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]." [http://evolutionwiki.org/wiki/M._tibialis_cranialis, Wikipedia:Tibialis_anterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior tibialis" RELATED [BTO:0001382]
synonym: "ibialis anticus" RELATED [BTO:0001382]
synonym: "tibialis anterior muscle" RELATED [BTO:0001382]
synonym: "tibialis cranialis" EXACT [MA:0002395]
synonym: "tibilais cranialis" EXACT []
xref: BTO:0001382
xref: EFO:0001385
xref: FMA:22532
xref: galen:TibialisAnterior
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png
xref: MA:0002395
xref: ncithesaurus:Tibialis_Cranialis
xref: SCTID:181696007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008230 ! tibialis

[Term]
id: UBERON:0001386
name: extensor digitorum longus
namespace: uberon
alt_id: UBERON:FMA_22534-MA_0002295
def: "The Extensor digitorum longus is a pennate muscle, situated at the lateral part of the front of the leg. [WP,unvetted]." [Wikipedia:Extensor_digitorum_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "extensor digitorum longus muscle" RELATED [BTO:0000436]
xref: BTO:0000436
xref: FMA:22534
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png
xref: MA:0002295
xref: ncithesaurus:Extensor_Digitorum_Longus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 {source="BTO"} ! extensor muscle
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0001387
name: fibularis longus
namespace: uberon
alt_id: UBERON:FMA_22539-MA_0002356
def: "In human anatomy, the peroneus longus (also known as fibularis longus) is a superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [Wikipedia:Fibularis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fibularis longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "fibularis longus muscle" RELATED [Wikipedia:Peroneus_longus]
synonym: "musculus peroneus longus" EXACT [FMA:22539, FMA:TA]
synonym: "peronaei longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "peronaeus longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "peroneous longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "peroneus longus" EXACT []
synonym: "peroneus longus muscle" EXACT []
synonym: "peroneus longus muscle" RELATED [Wikipedia:Peroneus_longus]
xref: FMA:22539
xref: galen:PeroneusLongus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png
xref: MA:0002356
xref: ncithesaurus:Peroneus_Longus
xref: SCTID:361825008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009132 ! peroneus

[Term]
id: UBERON:0001388
name: gastrocnemius
namespace: uberon
alt_id: UBERON:FMA_22541-MA_0002306
def: "In humans, the gastrocnemius muscle is a very powerful superficial muscle that is in the back part of the lower leg and also called the calf. It runs from its two heads just above the knee to the heel, and is involved in standing, walking, running and jumping. Along with the soleus muscle it forms the calf muscle. [WP,unvetted]." [Wikipedia:Gastrocnemius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gastrocnemius muscle" EXACT [BTO:0000506]
synonym: "m.gastrocnemius" EXACT []
synonym: "musculus gastrocnemius" RELATED [Wikipedia:Gastrocnemius_muscle]
xref: BTO:0000506
xref: EFO:0001413
xref: EHDAA2:0000701
xref: EHDAA:8293
xref: FMA:22541
xref: galen:Gastrocnemius
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8e/Gastrocnemius.png/200px-Gastrocnemius.png
xref: MA:0002306
xref: ncithesaurus:Gastrocnemius_Muscle
xref: SCTID:181700004
xref: VHOG:0001193
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 ! muscle of leg
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0001389
name: soleus
namespace: uberon
alt_id: UBERON:FMA_22542-MA_0002424
def: "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "soleus muscle" RELATED [BTO:0001265]
xref: BTO:0001265
xref: EFO:0001946
xref: FMA:22542
xref: galen:Soleus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002424
xref: ncithesaurus:Soleus
xref: SCTID:181702007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 ! muscle of leg
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0001665 ! triceps surae

[Term]
id: UBERON:0001391
name: popliteus
namespace: uberon
alt_id: UBERON:FMA_22590-MA_0002554
def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [Wikipedia:Popliteus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "m.popliteus" EXACT []
synonym: "popliteal muscle" EXACT []
xref: FMA:22590
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray439.png/200px-Gray439.png
xref: MA:0002554
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 ! muscle of leg

[Term]
id: UBERON:0001392
name: flexor hallucis longus
namespace: uberon
alt_id: UBERON:FMA_22593-MA_0002301
def: "The Flexor hallucis longus muscle (FHL) is a muscle of the leg. It is one of the deep muscles of the posterior compartment of the leg. The other deep muscles of the leg are flexor digitorum longus and tibialis posterior. FHL is the largest and most powerful of these deep muscles. The Flexor hallucis longus is situated on the fibular side of the leg. It arises from the inferior two-thirds of the posterior surface of the body of the fibula, with the exception of 2.5 cm. at its lowest part; from the lower part of the interosseous membrane; from an intermuscular septum between it and the Peronæi, laterally, and from the fascia covering the Tibialis posterior, medially. The fibers pass obliquely downward and backward, and end in a tendon which occupies nearly the whole length of the posterior surface of the muscle. This tendon lies in a groove which crosses the posterior surface of the lower end of the tibia, the posterior surface of the talus, and the under surface of the sustentaculum tali of the calcaneus; in the sole of the foot it runs forward between the two heads of the Flexor hallucis brevis, and is inserted into the base of the last phalanx of the great toe. The grooves on the talus and calcaneus, which contain the tendon of the muscle, are converted by tendinous fibers into distinct canals, lined by a mucous sheath. As the tendon passes forward in the sole of the foot, it is situated above, and crosses from the lateral to the medial side of the tendon of the Flexor digitorum longus, to which it is connected by a fibrous slip. [WP,unvetted]." [Wikipedia:Flexor_hallucis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22593
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002301
xref: ncithesaurus:Flexor_Hallucis_Longus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0001400
name: iliocostalis thoracis
namespace: uberon
alt_id: UBERON:FMA_22703-MA_0002320
def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png
xref: MA:0002320
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002251 ! iliocostalis

[Term]
id: UBERON:0001401
name: longissimus thoracis
namespace: uberon
alt_id: UBERON:FMA_22709-MA_0002339
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "longissimus dorsi" RELATED [BTO:0001651]
synonym: "musculus longissimus thoracis" RELATED [BTO:0001651]
xref: BTO:0001651
xref: FMA:22709
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002339
xref: ncithesaurus:Longissimus_Thoracis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000392 ! longissimus

[Term]
id: UBERON:0001402
name: longissimus cervicis
namespace: uberon
alt_id: UBERON:FMA_22711-MA_0002337
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_cervicis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus longissimus cervicis" RELATED [BTO:0001650]
xref: BTO:0001650
xref: FMA:22711
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002337
xref: ncithesaurus:Longissimus_Cervicis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000392 ! longissimus

[Term]
id: UBERON:0001403
name: longissimus capitis
namespace: uberon
alt_id: UBERON:FMA_22714-MA_0002336
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus longissimus capitis" RELATED [BTO:0001649]
synonym: "trachelomastoid muscle" RELATED [BTO:0001649]
xref: BTO:0001649
xref: FMA:22714
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002336
xref: ncithesaurus:Longissimus_Capitis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000392 ! longissimus

[Term]
id: UBERON:0001405
name: spinalis thoracis
namespace: uberon
alt_id: UBERON:FMA_22765-MA_0002381
def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [Wikipedia:Spinalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22765
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Spinalis.png/200px-Spinalis.png
xref: MA:0002381
xref: ncithesaurus:Spinalis_Thoracis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001407
name: semispinalis thoracis
namespace: uberon
alt_id: UBERON:FMA_22828-MA_0002374
def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [Wikipedia:Semispinalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22828
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Semispinalis.png/200px-Semispinalis.png
xref: MA:0002374
xref: ncithesaurus:Semispinalis_Thoracis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001408
name: semispinalis cervicis
namespace: uberon
alt_id: UBERON:FMA_22829-MA_0002373
def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [Wikipedia:Semispinalis_cervicis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22829
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png
xref: MA:0002373
xref: ncithesaurus:Semispinalis_Cervicis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001409
name: semispinalis capitis
namespace: uberon
alt_id: UBERON:FMA_22830-MA_0002372
def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [Wikipedia:Semispinalis_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22830
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png
xref: MA:0002372
xref: ncithesaurus:Semispinalis_Capitis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001421
name: pectoral girdle region
namespace: uberon
alt_id: UBERON:FMA_23217-MA_0000292-MIAA_0000181-XAO_0003063-ZFA_0000407
def: "Subdivision of limb or fin consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Subdivision of free upper limb, which is the proximal segment of an upper limb and links the free upper limb to the trunk; it is demarcated by the plane of the surface of the glenoid fossa from the free upper limb; together with the free upper limb, it constitutes the upper limb. Examples: There are only two instances, right and left pectoral girdles[FMA]." [FMA:23217, Wikipedia:Pectoral_girdle]
comment: Note that this class describes the organism subdivision, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). TODO - logical definition
subset: uberon_slim
subset: vertebrate_core
synonym: "cingulum membri superioris" EXACT [FMA:23217, FMA:TA]
synonym: "cingulum membri superioris" NARROW [FMA:TA]
synonym: "girdle - pectoral" EXACT []
synonym: "pectoral girdle" RELATED []
synonym: "shoulder girdle" NARROW [FMA:23217]
synonym: "upper limb girdle" NARROW [FMA:23217]
xref: FMA:23217
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001271
is_a: UBERON:0007823 ! appendage girdle region
intersection_of: UBERON:0007823 ! appendage girdle region
intersection_of: part_of UBERON:0000153 ! anterior region of body
disjoint_from: UBERON:0007831 ! skeleton of pectoral girdle
relationship: part_of UBERON:0000153 ! anterior region of body

[Term]
id: UBERON:0001423
name: radius bone
namespace: uberon
alt_id: UBERON:FMA_23463-MA_0001357
def: "The radius is one of the two large bones of the forearm, the other being the ulna. It extends from the lateral side of the elbow to the thumb side of the wrist and runs parallel to the ulna, which exceeds it in length and size. It is a long bone, prism-shaped and slightly curved longitudinally. The radius articulates with the capitulum of the humerus, the radial notch and the head of the ulna. The corresponding bone in the lower leg is the tibia.." [Wikipedia:Radius_(bone)]
comment: In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X]
subset: uberon_slim
synonym: "radius" EXACT [MA:0001357]
xref: AAO:0000788
xref: EMAPA:18466
xref: EMAPA:19103
xref: FMA:23463
xref: GAID:185
xref: galen:Radius
xref: MA:0001357
xref: MESH:A.02.835.232.087.702
xref: ncithesaurus:Radius_Bone
xref: OpenCyc:Mx4rwUsDcZwpEbGdrcN5Y29ycA
xref: SCTID:181940002
xref: VAO:0005012
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003466 ! lower arm bone
is_a: UBERON:0003607 ! forelimb long bone
relationship: develops_from UBERON:0006286 {evidence="definitional"} ! radius cartilage condensation
relationship: part_of UBERON:0010703 {source="VAO"} ! forelimb zeugopod skeleton

[Term]
id: UBERON:0001424
name: ulna
namespace: uberon
alt_id: UBERON:FMA_23466-MA_0001358
def: "The ulna is a long bone, prismatic in form. In anatomical position the ulna is placed at the medial side of the forearm closest to the body, parallel with the radius on both arms. [WP,unvetted]." [Wikipedia:Ulna]
subset: uberon_slim
xref: AAO:0000789
xref: EMAPA:18467
xref: EMAPA:19104
xref: FMA:23466
xref: GAID:188
xref: galen:Ulna
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg
xref: MA:0001358
xref: MESH:A.02.835.232.087.911
xref: ncithesaurus:Ulna
xref: OpenCyc:Mx4rwPtIM5wpEbGdrcN5Y29ycA
xref: SCTID:181948009
xref: VAO:0005013
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003466 ! lower arm bone
is_a: UBERON:0003607 ! forelimb long bone
relationship: develops_from UBERON:0006306 {evidence="definitional"} ! ulna cartilage condensation
relationship: part_of UBERON:0010703 {source="VAO"} ! forelimb zeugopod skeleton

[Term]
id: UBERON:0001427
name: scaphoid
namespace: uberon
alt_id: UBERON:FMA_23709-MA_0002555
def: "The scaphoid Bone is situated at the radial (radius bone) side of the carpus, or laterally between the hand and the forearm in standard medical posture (thumbs pointing outwards). The scaphoid bone is the largest bone of the proximal row of wrist bones, its long axis being from above downward, lateralward, and forward. It is approximately the size and shape of a medium sized cashew. The bone takes a semi-similar form of a boat. In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius. [WP,unvetted]." [Wikipedia:Scaphoid]
comment: todo - check AAO placement; in rodents this is fused with the lunate to make the scapholunate
subset: uberon_slim
synonym: "navicular bone of hand" EXACT []
synonym: "navicular of hand" RELATED []
synonym: "os carpi radiale" EXACT []
synonym: "os naviculare manus" RELATED [Wikipedia:Scaphoid_bone]
synonym: "os scaphoideum" RELATED [Wikipedia:Scaphoid_bone]
synonym: "radial carpal bone" RELATED []
synonym: "radiale" RELATED [AAO:0000790, Wikipedia:Scaphoid]
synonym: "scaphoid bone" EXACT []
synonym: "scaphoideum" RELATED [Wikipedia:Scaphoid_bone]
xref: AAO:0000790
xref: FMA:23709
xref: GAID:180
xref: galen:Scaphoid
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0002555
xref: MESH:A.02.835.232.087.144.650
xref: ncithesaurus:Scaphoid_Bone
xref: OpenCyc:Mx4rwAwWe5wpEbGdrcN5Y29ycA
xref: SCTID:181958008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001480 ! proximal carpal bone

[Term]
id: UBERON:0001428
name: lunate
namespace: uberon
alt_id: UBERON:FMA_23712-MA_0002556
def: "The lunate bone (semilunar bone) is a carpal bone (wrist bone) in the human hand that may be distinguished by its deep concavity and crescentic outline. It is situated in the center of the proximal row of the carpus (wrist) region between the fore arm and hand (manus). In standard medical posture, the lunate carpal bone is situated between the lateral Scaphoid bone and medial Triquetral bone. The lunate carpal bone straddles distally the bordering ulna and radius bones and proximally to distal carpus (wrist) Trapezium bone and Trapezoid bone[WP]." [Wikipedia:Lunate_bone]
comment: Taxon notes: articulating with the ulnare and the radiale[VAO}. human articulations: radius proximally capitate and hamate distally scaphoid laterally triangular medially
subset: uberon_slim
synonym: "intermediate carpal bone" RELATED []
synonym: "lunar" EXACT [VAO:0005040]
synonym: "lunate bone" EXACT []
synonym: "os carpi intermedium" EXACT []
synonym: "os lunatum" EXACT [VAO:0005040]
synonym: "semilunar" RELATED []
synonym: "semilunar bone" EXACT []
xref: FMA:23712
xref: GAID:181
xref: galen:Lunate
xref: MA:0002556
xref: MESH:A.02.835.232.087.144.663
xref: ncithesaurus:Lunate_Bone
xref: SCTID:181959000
xref: VAO:0005040
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001480 {source="FMA"} ! proximal carpal bone

[Term]
id: UBERON:0001429
name: pisiform
namespace: uberon
alt_id: UBERON:FMA_23718-MA_0001339
def: "The pisiform bone (also called pisiform or lentiform bone) is a small knobbly, pea-shaped wrist bone. The pisiform bone is found in the proximal row of the carpus. It is located where the ulna (inner bone of the forearm when in anatomical position) joins the carpus (wrist). It articulates only with the triquetral. It is a sesamoid bone. The pisiform bone may be known by its small size, and by its presenting a single articular facet. It is situated on a plane anterior to the other carpal bones and is spheroidal in form. The etymology derives from the Latin pīsum which means 'pea.' [WP,unvetted]." [Wikipedia:Pisiform_bone]
comment: todo - classify as sesamoid?
subset: uberon_slim
synonym: "accessory carpal bone" RELATED [MA:0001339]
synonym: "pisiform bone" EXACT [FMA:23718]
xref: FMA:23718
xref: galen:Pisiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001339
xref: ncithesaurus:Pisiform_Bone
xref: OpenCyc:Mx4rvtByTZwpEbGdrcN5Y29ycA
xref: SCTID:9181003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0001480 {source="FMA", source="MA"} ! proximal carpal bone
is_a: UBERON:0007997 ! sesamoid bone of hand

[Term]
id: UBERON:0001430
name: distal carpal bone 1
namespace: uberon
alt_id: UBERON:FMA_23721-MA_0001340
def: "." [Wikipedia:Trapezium_(bone)]
comment: Taxon notes: located between radiale and first metacarpal[VAO]. in humans - The capitate articulates with 1st metacarpal distally, scaphoid proximally, trapezoid medially, 2nd metacarpal medially[WP]
subset: uberon_slim
synonym: "carpal 1" RELATED [AAO:0010634]
synonym: "distal carpal 1" EXACT [VAO:0005043]
synonym: "greater multangular bone" EXACT []
synonym: "greater multiangular" RELATED [MA:0001340]
synonym: "hand distal carpal bone 1" RELATED [MA:0001340]
synonym: "os trapezium" EXACT [VAO:0005043]
synonym: "trapezial bone" EXACT [FMA:23721]
synonym: "trapezium" EXACT [VAO:0005043]
synonym: "trapezium bone" EXACT [FMA:23721]
xref: AAO:0010634
xref: FMA:23721
xref: galen:Trapezium
xref: MA:0001340
xref: ncithesaurus:Trapezial_Bone
xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA
xref: SCTID:361780007
xref: VAO:0005043
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone

[Term]
id: UBERON:0001431
name: distal carpal bone 2
namespace: uberon
alt_id: UBERON:FMA_23724-MA_0001341
def: "." [Wikipedia:Trapezoid_(bone)]
comment: Taxon notes: located in the distal part of the carpus and articulating with the second metacarpal, the distal carpals 1 and 2 and the radiale.[VAO] in humans - The capitate articulates with 2nd metacarpal distally, scaphoid proximally, trapezium medially, capitate medially[WP] Amphibians: Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2)[AAO]
subset: uberon_slim
synonym: "carpal 2" RELATED [AAO:0000848]
synonym: "distal carpal 2" EXACT [VAO:0005044]
synonym: "hand distal carpal bone 2" RELATED [MA:0001341]
synonym: "lesser multangular bone" EXACT [FMA:23724]
synonym: "lesser multiangular" RELATED [MA:0001341]
synonym: "os trapezoideum" EXACT [VAO:0005044]
synonym: "trapezoid" EXACT [VAO:0005044]
synonym: "trapezoid bone" EXACT [FMA:23724]
xref: AAO:0000848
xref: FMA:23724
xref: galen:Trapezoid
xref: MA:0001341
xref: ncithesaurus:Trapezoid_Bone
xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvxNWBJwpEbGdrcN5Y29ycA
xref: SCTID:361781006
xref: VAO:0005044
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001481 ! distal carpal bone

[Term]
id: UBERON:0001432
name: distal carpal bone 3
namespace: uberon
alt_id: UBERON:FMA_23727-MA_0001342
def: "." [Wikipedia:Capitate]
comment: Taxon notes: medially located and articulates with metacarpals 2-4, distal carpal 5 and the intermedium[VAO] In the human hand, the capitate bone is the largest of the carpal bones, and occupies the center of the wrist - The capitate articulates with seven bones: the scaphoid and lunate proximally, the second metacarpal, third metacarpal, and fourth metacarpal distally, the lesser multangular on the radial side, and the hamate on the ulnar side[WP] Amphibians: Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements[AAO]
subset: uberon_slim
synonym: "capitate" EXACT [MA:0001342]
synonym: "capitate bone" EXACT [FMA:23727]
synonym: "carpal 3" RELATED [AAO:0000849]
synonym: "distal carpal 3" EXACT [VAO:0005045]
synonym: "hand distal carpal bone 3" RELATED [MA:0001342]
synonym: "magnum" RELATED [VAO:0005045]
synonym: "os capitatum" RELATED [Wikipedia:Capitate_bone]
synonym: "os magnum" RELATED []
synonym: "os magnum (carpus)" EXACT [FMA:23727]
xref: AAO:0000849
xref: FMA:23727
xref: galen:Capitate
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001342
xref: ncithesaurus:Capitate_Bone
xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA
xref: SCTID:181964001
xref: VAO:0005045
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone

[Term]
id: UBERON:0001433
name: distal carpal bone 4
namespace: uberon
alt_id: UBERON:FMA_23730-MA_0001343
def: "." [Wikipedia:Hamate_bone]
comment: Taxon notes: articulates with the lunar, distal carpal 3, the ulnare as well as metacarpals 4 and 5.[VAO]. In the human hand the lunate proximally the fourth and fifth metacarpals distally the triangular medially the capitate laterally[WP] Amphibians: Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements[AAO]
subset: uberon_slim
synonym: "carpal 4" RELATED [AAO:0000850]
synonym: "distal carpal 4" EXACT [VAO:0005046]
synonym: "hamate" EXACT [MA:0001343]
synonym: "hamate bone" EXACT [FMA:23730]
synonym: "hand distal carpal bone 4" RELATED [MA:0001343]
synonym: "os hamatum" RELATED [VAO:0005046]
synonym: "unciform" RELATED [MA:0001343]
synonym: "unciform bone" EXACT [FMA:23730]
synonym: "uncinate" RELATED [MA:0001343]
xref: AAO:0000850
xref: FMA:23730
xref: galen:Hamate
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001343
xref: ncithesaurus:Hamate_Bone
xref: OpenCyc:Mx4rwFTmuJwpEbGdrcN5Y29ycA
xref: SCTID:181967008
xref: VAO:0005046
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone

[Term]
id: UBERON:0001434
name: skeletal system
namespace: uberon
alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434
def: "Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA]
comment: Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates
subset: uberon_slim
subset: vertebrate_core
synonym: "set of all bones and joints" NARROW SENSU []
synonym: "skeleton system" EXACT []
synonym: "Skelettsystem" RELATED [BTO:0001486]
xref: AAO:0000566
xref: BTO:0001486
xref: EFO:0000806
xref: EHDAA2:0003168
xref: EV:0100139
xref: FMA:23881
xref: MA:0000018
xref: MESH:A.02
xref: ncithesaurus:Skeletal_System
xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
xref: TAO:0000434
xref: VAO:0000027
xref: VHOG:0001254
xref: XAO:0003060
xref: ZFA:0000434
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001016
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001474 ! bone
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0002204 ! musculoskeletal system

[Term]
id: UBERON:0001435
name: carpal bone
namespace: uberon
alt_id: UBERON:FMA_23889-MA_0000296
def: "A bone that is part of the carpal skeleton. Examples: scaphoid, lunate, capitate[cjm]. In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [UBERON:cjm, Wikipedia:Carpal_bone]
subset: uberon_slim
synonym: "bone of carpus" EXACT []
synonym: "carpal skeleton bone" EXACT []
xref: EMAPA:25056
xref: FMA:23889
xref: GAID:179
xref: galen:CarpalBone
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png
xref: MA:0000296
xref: MESH:A.02.835.232.087.144
xref: ncithesaurus:Carpal_Bone
xref: SCTID:83936004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003656 ! mesopodium bone
is_a: UBERON:0005897 ! hand bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: develops_from UBERON:0006213 ! carpus cartilage condensation
relationship: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0009880 ! carpal skeleton

[Term]
id: UBERON:0001436
name: phalanx of finger
namespace: uberon
alt_id: UBERON:FMA_23914-MA_0000306
def: "A phalanx that is part of a forelimb[Obol]." [Obol:obol]
comment: This class was created automatically from a combination of ontologies
synonym: "digitus manus phalanx" EXACT [OBOL:automatic]
synonym: "finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit phalanx" EXACT [OBOL:automatic]
synonym: "hand phalanx" EXACT [MA:0000306]
synonym: "phalanges of fore digit" RELATED PLURAL [AAO:0000947]
synonym: "phalanx of digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of digitus manus" EXACT [OBOL:automatic]
synonym: "phalanx of fore digit" EXACT []
synonym: "phalanx of hand" EXACT []
synonym: "phalanx of hand digit" EXACT [OBOL:automatic]
xref: AAO:0000947
xref: FMA:23914
xref: http://mbe.oxfordjournals.org/content/26/3/613/F1.large.jpg
xref: MA:0000306
xref: ncithesaurus:Hand_Phalanx
xref: SCTID:181976001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003221 ! phalanx
is_a: UBERON:0003607 ! forelimb long bone
is_a: UBERON:0004249 ! hand digit bone
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: develops_from UBERON:0010686 ! finger phalanx cartilage condensation
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0001437
name: epiphysis
namespace: uberon
alt_id: UBERON:FMA_24012-ZFA_0000019
def: "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Epiphysis]
comment: see also: annular epiphysis
subset: uberon_slim
synonym: "end of long bone" EXACT []
synonym: "epiphyses" EXACT PLURAL []
synonym: "long bone epiphysis" EXACT []
xref: AAO:0000742
xref: BTO:0000413
xref: FMA:24012
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg
xref: MA:0001362
xref: MESH:A.02.835.232.251
xref: ncithesaurus:Long_Bone_Epiphysis
xref: SCTID:244701002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone

[Term]
id: UBERON:0001438
name: metaphysis
namespace: uberon
alt_id: UBERON:FMA_24014-MA_0001363
def: "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Metaphysis]
comment: adjacent to or containing epiphyseal plate? Note in FMA the metaphysis is part of the diaphysis, but not in MA. In the diagram in WP, it appears to be adjacent, not part_of.
subset: uberon_slim
synonym: "diaphyseal end of long bone" EXACT []
synonym: "long bone metaphysis" EXACT []
synonym: "metaphyses" EXACT PLURAL []
xref: FMA:24014
xref: MA:0001363
xref: ncithesaurus:Metaphysis
xref: SCTID:304581004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004769 ! diaphysis

[Term]
id: UBERON:0001439
name: compact bone
namespace: uberon
alt_id: UBERON:FMA_24018-MA_0001461
def: "one of the two types of osseous tissue that form bones. Compact/Cortical bone facilitates bone's main functions: to support the body, protect organs, provide levers for movement, and store and release chemical elements, mainly calcium. As its name implies, cortical bone forms the cortex, or outer shell, of most bones. Again, as its name implies, compact bone is much denser than cancellous bone, which is the other type of osseous tissue. Furthermore, it is harder, stronger and stiffer than cancellous bone. Cortical bone contributes about 80% of the weight of a human skeleton. The primary anatomical and functional unit of cortical bone is the osteon.." [Wikipedia:Compact_bone]
comment: MP distinguishes compact/cortical bone. in other AOs they are syns
subset: uberon_slim
synonym: "bony cortex" EXACT [HP:0002753]
synonym: "compact bone tissue" EXACT []
synonym: "cortical bone" EXACT []
synonym: "cortical bone tissue" EXACT []
synonym: "cortical region of bone" EXACT []
synonym: "substantia compacta (pars ossea)" EXACT []
synonym: "substantia corticalis" EXACT [FMA:24018, FMA:TA]
xref: FMA:24018
xref: galen:CorticalBone
xref: MA:0001461
xref: ncithesaurus:Cortical_Bone
xref: SCTID:361728003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
disjoint_from: UBERON:0002483 ! trabecular bone tissue
relationship: part_of UBERON:0002482 ! lamellar bone

[Term]
id: UBERON:0001440
name: forelimb skeleton
namespace: uberon
alt_id: UBERON:FMA_24139-MA_0000612
def: "The collection of all skeletal elements in a forelimb region. Excludes the pectoral girdle" [UBERON:cjm]
comment: TODO - find a home for: FMA:24139
synonym: "bones of upper limb" EXACT []
synonym: "fore limb skeleton" EXACT []
synonym: "forelimb skeleton" EXACT [VHOG:0001256]
synonym: "ossa membri superioris" EXACT [FMA:24139, FMA:TA]
synonym: "set of bones of upper limb" EXACT []
synonym: "skeleton of upper limb" EXACT [FMA:24139]
synonym: "upper limb skeleton" EXACT []
xref: AAO:0000202
xref: EHDAA2:0002222
xref: FMA:24142
xref: VAO:0000151
xref: VHOG:0001256
xref: XAO:0003061
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004381 ! skeleton of limb
is_a: UBERON:0007272 ! pectoral appendage skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 {source="FMA"} ! forelimb
relationship: subdivision_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0001441
name: hindlimb skeleton
namespace: uberon
alt_id: UBERON:FMA_24140-MA_0000670
def: "The collection of all skeletal elements in an hindlimb region." [UBERON:cjm]
comment: TOOD - find a home for: FMA:24140
subset: uberon_slim
synonym: "bones of lower limb" EXACT []
synonym: "hind limb skeleton" EXACT [XAO:0003062]
synonym: "hindlimb skeleton" EXACT [VHOG:0001255]
synonym: "lower limb skeleton" EXACT []
synonym: "ossa membri inferioris" EXACT [FMA:24140, FMA:TA]
synonym: "set of bones of lower limb" EXACT []
synonym: "skeleton of lower limb" EXACT [FMA:24140]
xref: AAO:0000217
xref: EHDAA2:0002226
xref: FMA:24144
xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA
xref: VAO:0000152
xref: VHOG:0001255
xref: XAO:0003062
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004381 ! skeleton of limb
is_a: UBERON:0007273 ! pelvic appendage skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 {source="FMA"} ! hindlimb
relationship: subdivision_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0001442
name: skeleton of hand
namespace: uberon
alt_id: UBERON:FMA_24159-MA_0000619
def: "The collection of all skeletal elements in a hand; here 'hand' includes both the wrist region and hand proper." [UBERON:cjm]
synonym: "anterior autopodium" RELATED [VAO:0005020, VAO:NI]
synonym: "anterior autopodium skeleton" EXACT []
synonym: "bones of hand" EXACT [FMA:24159]
synonym: "fore autopod skeleton" EXACT []
synonym: "forelimb autopod skeleton" EXACT []
synonym: "hand region skeleton" EXACT [EHDAA2:0002227]
synonym: "hand skeleton" EXACT [FMA:24159]
synonym: "manus" RELATED [VAO:0005020, VAO:NI]
synonym: "manus skeleton" EXACT []
synonym: "ossa manus" EXACT [FMA:24159, FMA:TA]
synonym: "set of bones of hand" EXACT [FMA:24159]
xref: EHDAA2:0002227
xref: FMA:24159
xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA
xref: VAO:0005020
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006717 ! skeleton of autopod
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton
relationship: part_of UBERON:0002398 ! hand
relationship: subdivision_of UBERON:0002398 ! hand

[Term]
id: UBERON:0001443
name: chest
namespace: uberon
alt_id: UBERON:FMA_24216-MA_0000031
def: "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest]
comment: editor note - FMA:24216 present in FMA1, but gone in subsequent versions
subset: uberon_slim
synonym: "anterior chest" EXACT [FMA:24816]
synonym: "anterior thoracic region" EXACT []
synonym: "anterolateral part of thorax" EXACT []
synonym: "front of chest" EXACT [FMA:24816]
synonym: "front of thorax" EXACT []
synonym: "pectus" EXACT [FMA:24816, FMA:TA]
synonym: "thorax" RELATED [FMA:9576]
xref: BTO:0001368
xref: EFO:0000965
xref: EV:0100010
xref: FMA:9576
xref: GAID:91
xref: galen:Chest
xref: galen:Thorax
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Chest.jpg/200px-Chest.jpg
xref: MA:0000031
xref: MAT:0000295
xref: MESH:A.01.911
xref: MIAA:0000295
xref: ncithesaurus:Chest
xref: ncithesaurus:Thorax
xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0000916
is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk
relationship: part_of UBERON:0000915 {source="FMA", source="MA"} ! thoracic segment of trunk

[Term]
id: UBERON:0001444
name: subdivision of head
namespace: uberon
alt_id: UBERON:FMA_24218-XAO_0000040
comment: This class was created automatically from a combination of ontologies
synonym: "head region" EXACT []
synonym: "head subdivision" EXACT []
synonym: "region of head" EXACT []
xref: FMA:24218
xref: SCTID:123852005
xref: XAO:0000040
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0001445
name: skeleton of foot
namespace: uberon
alt_id: UBERON:FMA_24222-MA_0000643
def: "The collection of all skeletal elements in a foot; here 'foot' includes both the ankle region and foot proper." [UBERON:cjm]
synonym: "foot region skeleton" EXACT [EHDAA2:0002228]
synonym: "foot skeleton" EXACT [FMA:24222]
synonym: "pes" RELATED [VAO:0005021, VAO:NI]
synonym: "pes skeleton" EXACT []
synonym: "posterior autopodium" RELATED [VAO:0005021, VAO:NI]
synonym: "posterior autopodium skeleton" EXACT []
synonym: "set of bones of foot" EXACT [FMA:24222]
xref: EHDAA2:0002228
xref: FMA:24222
xref: VAO:0005021
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006717 ! skeleton of autopod
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001441 {source="EHDAA2"} ! hindlimb skeleton
relationship: part_of UBERON:0002387 ! foot
relationship: subdivision_of UBERON:0002387 ! foot

[Term]
id: UBERON:0001446
name: fibula
namespace: uberon
alt_id: UBERON:FMA_24479-MA_0001360
def: "The fibula or calf bone is a bone located on the lateral side of the tibia, with which it is connected above and below. It is the smaller of the two bones, and, in proportion to its length, the most slender of all the long bones. Its upper extremity is small, placed toward the back of the head of the tibia, below the level of the knee-joint, and excluded from the formation of this joint. Its lower extremity inclines a little forward, so as to be on a plane anterior to that of the upper end; it projects below the tibia, and forms the lateral part of the ankle-joint. [WP,unvetted]." [Wikipedia:Fibula]
subset: uberon_slim
xref: AAO:0000891
xref: BTO:0002346
xref: EFO:0003052
xref: EMAPA:18512
xref: EMAPA:19141
xref: FMA:24479
xref: GAID:202
xref: galen:Fibula
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Illu_lower_extremity.jpg/200px-Illu_lower_extremity.jpg
xref: MA:0001360
xref: MESH:A.02.835.232.500.321
xref: ncithesaurus:Fibula
xref: SCTID:302529003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 {source="FMA"} ! long bone
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0004251 ! lower leg bone
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton

[Term]
id: UBERON:0001447
name: tarsal bone
namespace: uberon
alt_id: UBERON:FMA_24491-MA_0000297
def: "A bone that is part of the tarsal skeleton. Examples: calcaneus, talus, centralia." [UBERON:cjm, Wikipedia:Ankle_bone]
comment: In primitive tetrapods, such as Trematops, the tarsus consists of three rows of bones. There are three proximal tarsals, the tibiale, intermedium, and fibulare, named for their points of articulation with the bones of the lower limb. These are followed by a second row of four bones, referred to as the centralia (singular: centrale), and then a row of five distal tarsals, each articulating with a single metatarsal. In the great majority of tetrapods, including all of those alive today, this simple pattern is modified by the loss and fusion of various of the bones.[3] In reptiles and mammals, there are normally just two proximal tarsals, the calcaneus (equivalent to the amphibian fibulare) and the talus (probably derived from a fusion of multiple bones). In mammals, including humans, the talus forms a hinge joint with the tibia, a feature especially well developed in the artiodactyls. The calcaneus is also modified, forming a heel for the attachment of the Achilles tendon. Neither of these adaptations is found in reptiles, which have a relatively simple structure to both bones.[3] The fifth distal tarsal disappears relatively early in evolution, with the remainder becoming the cuneiform and cuboid bones. Reptiles usually retain two centralia, while mammals typically have only one (the navicular).[3] In birds, the tarsus has disappeared, with the proximal tarsals having fused with the tibia, the centralia having disappeared, and the distal bones having fused with the metatarsals to form a single tarsometatarsus bone, effectively giving the leg a third segment[Wikipedia:Tarsus_(skeleton)]
subset: uberon_slim
synonym: "ankle bone" EXACT [FMA:24491]
synonym: "bone of ankle" EXACT [FMA:24491]
synonym: "bone of tarsus" EXACT [FMA:24491]
synonym: "bony tarsus" RELATED [BTO:0002343]
synonym: "hind mesopodium" RELATED [AAO:0000220]
synonym: "ossa tarsalia" EXACT PLURAL [FMA:71339, FMA:TA]
synonym: "ossa tarsi" EXACT PLURAL [FMA:71339, FMA:TA]
synonym: "tarsal" RELATED [BTO:0002343]
synonym: "tarsus osseus" RELATED [BTO:0002343]
xref: BTO:0002343
xref: FMA:24491
xref: GAID:194
xref: galen:TarsalBone
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000297
xref: MESH:A.02.835.232.300.710
xref: ncithesaurus:Tarsal_Bone
xref: SCTID:108372004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003656 ! mesopodium bone
is_a: UBERON:0005899 ! foot bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: develops_from UBERON:0010541 ! tarsus cartilage condensation
relationship: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0009879 ! tarsal skeleton

[Term]
id: UBERON:0001448
name: metatarsal bone
namespace: uberon
alt_id: UBERON:FMA_24492-MA_0000303
def: "The metatarsus or metatarsal bones are a group of five long bones in the foot located between the tarsal bones of the hind- and mid-foot and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the hand. [WP,unvetted]." [Wikipedia:Metatarsal_bone]
subset: uberon_slim
synonym: "metatarsal" EXACT []
synonym: "ossa metatarsalia" RELATED [BTO:0002347]
synonym: "ossa metatarsi" RELATED [BTO:0002347]
xref: BTO:0002347
xref: FMA:24492
xref: GAID:193
xref: galen:Metatarsal
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0000303
xref: MESH:A.02.835.232.300.492
xref: ncithesaurus:Metatarsal_Bone
xref: SCTID:302532000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
is_a: UBERON:0005899 ! foot bone
intersection_of: UBERON:0003821 ! metacarpal/metatarsal bone
intersection_of: part_of UBERON:0000983 ! metatarsus region
relationship: part_of UBERON:0000983 ! metatarsus region
relationship: part_of UBERON:0010545 ! metatarsus skeleton

[Term]
id: UBERON:0001449
name: phalanx of toe
namespace: uberon
alt_id: UBERON:0004272
alt_id: UBERON:FMA_24493-MA_0000305
def: "A phalanx that is part of a hindlimb[Obol]." [OBOL:automatic]
synonym: "digitus pedis phalanx" EXACT [OBOL:automatic]
synonym: "foot digit phalanx" EXACT [OBOL:automatic]
synonym: "foot phalanx" EXACT [MA:0000305]
synonym: "phalanges of hind digit" RELATED PLURAL [AAO:0000930]
synonym: "phalanx of digit of foot" EXACT [OBOL:automatic]
synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit" EXACT [OBOL:automatic]
synonym: "phalanx of hind digit" EXACT []
synonym: "toe phalanx" EXACT [OBOL:automatic]
xref: AAO:0000930
xref: FMA:24493
xref: MA:0000305
xref: ncithesaurus:Foot_Phalanx
xref: ncithesaurus:Phalanx_of_the_Foot
xref: SCTID:302533005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003221 ! phalanx
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0004248 ! foot digit bone
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0002387 ! foot
relationship: develops_from UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0001450
name: calcaneus
namespace: uberon
alt_id: UBERON:FMA_24496-MA_0001348
def: "In humans, the calcaneus or heel bone is a bone of the tarsus of the foot which constitute the heel. In some other animals, it is the point of the hock. [WP,unvetted]." [Wikipedia:Calcaneus]
comment: AAO: One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale.[AAO:0000913]
subset: uberon_slim
synonym: "astragalus" RELATED HOMOLOGY [AAO:0000913]
synonym: "calcaneal bone" EXACT [BTO:0002355]
synonym: "calcaneum" EXACT [MA:0001348]
synonym: "fibulare" RELATED HOMOLOGY [AAO:0000913]
synonym: "fibulare" RELATED [AAO:0000913, VAO:0005016, Wikipedia:Calcaneus]
synonym: "os calcis" EXACT [FMA:24496]
synonym: "os tarsi fibulare" RELATED [BTO:0002355]
xref: AAO:0000913
xref: BTO:0002355
xref: EMAPA:18501
xref: EMAPA:19134
xref: FMA:24496
xref: galen:Calcaneum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/200px-Subtalar_Joint.PNG
xref: MA:0001348
xref: MESH:A.02.835.232.300.710.300
xref: ncithesaurus:Calcaneum
xref: SCTID:182099002
xref: VAO:0005016
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001447 {source="FMA"} ! tarsal bone
relationship: develops_from UBERON:0010842 ! calcaneum cartilage condensation

[Term]
id: UBERON:0001451
name: navicular bone of foot
namespace: uberon
alt_id: UBERON:FMA_24499-MA_0001349
def: "The navicular bone is one of the tarsal bones, found in the foot. It is located on the medial side of the foot, and articulates proximally with the talus, distally with the three cuneiform bones, and occasionally laterally with the cuboid[WP]." [Wikipedia:Navicular_bone]
comment: taxon notes: connections vary depending on species. AAO: Oval tarsal element that is located on the center of the mesopodium. It articulates with all other elements of the tarsus except tarsal 5. In humans: there is a cuboid instead of distal tarsal 4 and 5 - may articulate laterally with the cuboid[WP]. TODO - add correct VAO xref (currently broken)
subset: uberon_slim
synonym: "central tarsal bone" RELATED []
synonym: "centrale" RELATED []
synonym: "centrale (hind)" EXACT [AAO:0000924]
synonym: "navicular" EXACT []
synonym: "navicular of foot" EXACT []
synonym: "os naviculare" EXACT [FMA:24499, FMA:TA]
synonym: "os naviculare pedis" EXACT [BTO:0002356]
xref: AAO:0000924
xref: BTO:0002356
xref: FMA:24499
xref: galen:Navicular
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray276.png/200px-Gray276.png
xref: MA:0001349
xref: ncithesaurus:Centralization
xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA
xref: SCTID:182100005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001447 ! tarsal bone
relationship: distally_connected_to UBERON:0010721 {notes="numbers vary"} ! distal tarsal bone
relationship: proximally_connected_to UBERON:0002395 ! talus

[Term]
id: UBERON:0001452
name: distal tarsal bone 1
namespace: uberon
alt_id: UBERON:FMA_24518-MA_0001352
def: "Endochondral tarsal bone articulating with centralia and metatarsal 1." [VAO:0005052, Wikipedia:Medial_cuneiform_bone]
subset: uberon_slim
synonym: "cuneiforme 1" EXACT [VAO:0005052]
synonym: "distal tarsal 1" EXACT [VAO:0005052]
synonym: "entocuneiforme" EXACT [VAO:0005052]
synonym: "first cuneiform bone" EXACT [FMA:24518]
synonym: "foot distal carpal bone 1" RELATED []
synonym: "medial cuneiform" EXACT [FMA:24518]
synonym: "medial cuneiform bone" EXACT [FMA:24518]
synonym: "os cuneiforme mediale" EXACT [FMA:TA]
synonym: "os cuneiforme primum" RELATED [BTO:0002360]
synonym: "ossa cuneiforme mediale" RELATED [BTO:0002360]
synonym: "tarsal 1" EXACT [AAO:0000918]
xref: AAO:0000918
xref: BTO:0002360
xref: FMA:24518
xref: galen:MedialCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray290.png/200px-Gray290.png
xref: MA:0001352
xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA
xref: SCTID:182116007
xref: VAO:0005052
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003650 ! metatarsal bone of digit 1
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot

[Term]
id: UBERON:0001453
name: distal tarsal bone 2
namespace: uberon
alt_id: UBERON:FMA_24519-MA_0001353
def: "Endochondral tarsal bone articulating with centralia and metatarsal 2." [VAO:0005053, Wikipedia:Intermediate_cuneiform_bone]
comment: The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted]
subset: uberon_slim
synonym: "cuneiforme 2" EXACT [VAO:0005053]
synonym: "distal tarsal 2" EXACT [VAO:0005053]
synonym: "foot distal carpal bone 2" RELATED []
synonym: "intermediate cuneiform" EXACT []
synonym: "mesocuneiforme" EXACT [VAO:0005053]
synonym: "middle cuneiform" EXACT []
synonym: "os cuneiforme intermedium" RELATED [BTO:0002359]
synonym: "os cuneiforme secundum" RELATED [BTO:0002359]
synonym: "second cuneiform bone" EXACT []
synonym: "second cuneiform bone of foot" EXACT []
synonym: "tarsal 2" EXACT [AAO:0000919]
xref: AAO:0000919
xref: BTO:0002359
xref: FMA:24519
xref: galen:IntermediateCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0001353
xref: SCTID:179512006
xref: VAO:0005053
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003651 ! metatarsal bone of digit 2
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot

[Term]
id: UBERON:0001454
name: distal tarsal bone 3
namespace: uberon
alt_id: UBERON:FMA_24520-MA_0001354
def: "Endochondral tarsal bone articulating with centralia and metatarsal 3." [VAO:0005054, Wikipedia:Lateral_cuneiform_bone]
comment: The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted]
subset: uberon_slim
synonym: "cuneiforme 3" EXACT [VAO:0005054]
synonym: "distal tarsal 3" EXACT [VAO:0005054]
synonym: "ectocuneiforme" EXACT [VAO:0005054]
synonym: "foor distal carpal bone 3" RELATED []
synonym: "lateral cuneiform" EXACT []
synonym: "lateral cuneiform bone" EXACT [FMA:24520]
synonym: "os cuneiforme laterale" RELATED [BTO:0002358]
synonym: "os cuneiforme tertium" RELATED [BTO:0002358]
synonym: "ossa cuneiforme laterale" RELATED [BTO:0002358]
synonym: "tarsal 3" EXACT [AAO:0000920]
synonym: "third cuneiform bone" EXACT []
xref: AAO:0000920
xref: BTO:0002358
xref: FMA:24520
xref: galen:LateralCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0001354
xref: OpenCyc:Mx4rvoLPu5wpEbGdrcN5Y29ycA
xref: SCTID:182117003
xref: VAO:0005054
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003652 ! metatarsal bone of digit 3
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot

[Term]
id: UBERON:0001455
name: cuboid bone
namespace: uberon
alt_id: UBERON:FMA_24527-MA_0001355
def: "In the human body, the cuboid bone is one of the seven tarsal bones of the foot. [WP,unvetted]." [Wikipedia:Cuboid_bone]
subset: uberon_slim
synonym: "cuboid" EXACT []
synonym: "foot distal carpal bone 4 and 5" RELATED []
synonym: "os cuboideum" RELATED [BTO:0002357]
xref: BTO:0002357
xref: FMA:24527
xref: galen:Cuboid
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Gray274.png/200px-Gray274.png
xref: MA:0001355
xref: ncithesaurus:Cuboid_Bone
xref: SCTID:182101009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010721 ! distal tarsal bone

[Term]
id: UBERON:0001456
name: face
namespace: uberon
alt_id: UBERON:FMA_24728-MA_0002473
def: "Subdivision of head which consists of the viscerocranium and all layers superficial to it[FMA]." [FMA:24728, Wikipedia:Face]
comment: The face develops from outward growth of tissue located rostral to the cranium & pharynx. The lower jaw and most of the upper jaw are formed by growth of the first pharyngeal (branchial) arch. The upper incisor region and the nose and forehead (frontal region) are formed from tissue located rostral to the neural tube (frontonasal prominence)[vanat.cvm.umn.edu/TFFlectPDFs/LectFaceDevelop.pdf]
subset: uberon_slim
synonym: "visage" RELATED [BTO:0003369]
xref: BTO:0003369
xref: FMA:24728
xref: GAID:64
xref: galen:Face
xref: HAO:0000316
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Mona_Lisa_headcrop.jpg/200px-Mona_Lisa_headcrop.jpg
xref: MA:0002473
xref: MESH:A.01.456.505
xref: ncithesaurus:Face
xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA
xref: SCTID:302549007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001444 ! subdivision of head

[Term]
id: UBERON:0001460
name: arm
namespace: uberon
alt_id: UBERON:FMA_24890-MA_0000033
def: "The part of the forelimb extending from the shoulder to the autopod[cjm]." [Wikipedia:Arm]
comment: This class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm. Editor note: currently declared as overlapping hand, as AOs disagree over whether some wrist parts are in the arm or hand
subset: uberon_slim
synonym: "upper extremity" RELATED [MESH:A.01.378.800]
xref: BTO:0001435
xref: EFO:0001410
xref: EHDAA2:0000140
xref: EHDAA:4164
xref: EHDAA:6210
xref: EHDAA:8275
xref: EMAPA:17413
xref: GAID:52
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Upperarm.jpg/200px-Upperarm.jpg
xref: MA:0000033
xref: MESH:A.01.378.800
xref: MESH:A.01.378.800.075
xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA
xref: VHOG:0000339
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006058 ! multi-limb segment region
relationship: distally_connected_to UBERON:0002398 ! hand
relationship: part_of UBERON:0002102 ! forelimb
relationship: proximally_connected_to UBERON:0001467 ! shoulder

[Term]
id: UBERON:0001461
name: elbow
namespace: uberon
alt_id: UBERON:FMA_24901-MA_0000036
def: "The elbow is the region surrounding the elbow-joint—the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]." [Wikipedia:Elbow]
comment: Naming conventions for pod terms under discussion within phenoscape group
subset: uberon_slim
synonym: "cubital region" EXACT []
synonym: "elbow limb segment" EXACT []
synonym: "elbow region" EXACT []
xref: EFO:0003069
xref: EHDAA2:0000429
xref: EHDAA:4166
xref: EHDAA:6212
xref: EMAPA:17414
xref: FMA:24901
xref: GAID:54
xref: galen:Elbow
xref: MA:0000036
xref: MESH:A.01.378.800.420
xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA
xref: SCTID:76248009
xref: VHOG:0000340
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 {source="FMA"} ! limb segment
is_a: UBERON:0008785 ! upper limb segment
relationship: part_of UBERON:0001460 {source="EHDAA2"} ! arm

[Term]
id: UBERON:0001463
name: hand digit 1
namespace: uberon
alt_id: UBERON:FMA_24938-MA_0000454
def: "1st (lateral-most) digit of the fore autopod[Wikipedia]." [Wikipedia:Thumb]
comment: This class represents all instances of the first digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
subset: uberon_slim
synonym: "digit 1 of fore-paw" EXACT [EMAPA:17429]
synonym: "digitus 1" EXACT []
synonym: "digitus primus" EXACT []
synonym: "finger 1" EXACT [EHDAA2:0000511]
synonym: "first digit of hand" EXACT []
synonym: "fore digit I" EXACT [AAO:0010639]
synonym: "pollex" EXACT []
synonym: "pollex; digitus primus [I]" EXACT []
synonym: "thumb" EXACT []
xref: AAO:0010639
xref: EHDAA2:0000511
xref: EMAPA:17429
xref: FMA:24938
xref: GAID:58
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Thumb-up.jpg/200px-Thumb-up.jpg
xref: MA:0000454
xref: MESH:A.01.378.800.667.430.705
xref: ncithesaurus:Hand_Digit_1
xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA
xref: SCTID:302540006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006048 ! digit 1
intersection_of: UBERON:0006048 ! digit 1
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0001464
name: hip
namespace: uberon
alt_id: UBERON:FMA_24964-MA_0000045
def: "The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]." [Wikipedia:Hip]
comment: in BTO this is part of the abdomen - this creates an inconsistency if limb and abdomen are spatially disjoint
subset: uberon_slim
synonym: "hip region" EXACT [FMA:24964]
synonym: "regio coxae" EXACT [FMA:24964]
xref: BTO:0001457
xref: EFO:0001929
xref: EHDAA2:0000783
xref: EHDAA:5153
xref: EHDAA:6178
xref: EMAPA:17490
xref: FMA:24964
xref: GAID:47
xref: galen:Hip
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Hip.jpg/200px-Hip.jpg
xref: MA:0000045
xref: MESH:A.01.378.610.400
xref: ncithesaurus:Hip
xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA
xref: SCTID:302543008
xref: VHOG:0000346
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001271 {source="FMA"} ! pelvic girdle region

[Term]
id: UBERON:0001465
name: knee
namespace: uberon
alt_id: UBERON:FMA_24974-MA_0000046
def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee]
subset: uberon_slim
synonym: "knee region" EXACT []
xref: BTO:0003595
xref: EFO:0001957
xref: EHDAA2:0000895
xref: EHDAA:5159
xref: EHDAA:6184
xref: EMAPA:17493
xref: FMA:24974
xref: GAID:48
xref: galen:Knee
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Male_Knee_by_David_Shankbone.jpg/200px-Male_Knee_by_David_Shankbone.jpg
xref: MA:0000046
xref: MESH:A.01.378.610.450
xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA
xref: SCTID:361291001
xref: VHOG:0000347
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0001466
name: foot digit
namespace: uberon
alt_id: UBERON:0000027
alt_id: UBERON:FMA_25046-MA_0000048
def: "A digit that is part_of a hindlimb[Obol]." [Wikipedia:Toe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "digit of foot" EXACT []
synonym: "digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "digiti pedis" EXACT PLURAL [FMA:70664, FMA:TA]
synonym: "digitipedis" RELATED [BTO:0002348]
synonym: "digitus pedis" EXACT []
synonym: "hind digit" EXACT [XAO:0003035]
synonym: "hind_digit" EXACT [AAO:0000888]
synonym: "hindlimb digit" EXACT []
synonym: "toe" EXACT [FMA:25046]
xref: AAO:0000888
xref: BTO:0002348
xref: FMA:25046
xref: GAID:44
xref: galen:Toe
xref: MA:0000048
xref: ncithesaurus:Toe
xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA
xref: SCTID:116667001
xref: XAO:0003035
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002544 ! digit
is_a: UBERON:0008784 ! lower limb segment
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0001467
name: shoulder
namespace: uberon
alt_id: UBERON:FMA_25202-MA_0000038
def: "In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]." [Wikipedia:Shoulder]
comment: AO notes: MA treats humerus as a shoulder bone. In FMA, the shoulder is part of the pectoral girdle region
subset: uberon_slim
synonym: "shoulder region" EXACT []
xref: EFO:0003068
xref: EHDAA2:0001834
xref: EHDAA:4180
xref: EHDAA:6228
xref: EMAPA:17421
xref: FMA:25202
xref: GAID:60
xref: galen:Shoulder
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Shoulderjoint.PNG/200px-Shoulderjoint.PNG
xref: MA:0000038
xref: MESH:A.01.378.800.750
xref: ncithesaurus:Shoulder
xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA
xref: SCTID:361103004
xref: VHOG:0000342
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001421 {source="FMA"} ! pectoral girdle region

[Term]
id: UBERON:0001468
name: intervertebral symphysis
namespace: uberon
alt_id: UBERON:FMA_25511-MA_0001514
comment: This class was created automatically from a combination of ontologies
synonym: "joint of vertebral body" EXACT []
xref: FMA:25511
xref: MA:0001514
xref: SCTID:244512000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002216 ! symphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0001469
name: sternoclavicular joint
namespace: uberon
alt_id: UBERON:FMA_25883-MA_0001507
def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [Wikipedia:Sternoclavicular_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EMAPA:19203
xref: FMA:25883
xref: GAID:270
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Gray325.png/200px-Gray325.png
xref: MA:0001507
xref: MESH:A.02.835.583.781
xref: ncithesaurus:Sternoclavicular_Joint
xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwI-ZZpwpEbGdrcN5Y29ycA
xref: SCTID:182165002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint

[Term]
id: UBERON:0001470
name: glenohumeral joint
namespace: uberon
alt_id: UBERON:FMA_25912-MA_0000459
def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [Wikipedia:Glenohumeral_joint]
comment: in FMA, this is part of the bony pectoral girdle, alongside the skeleton of pectoral girdle
subset: uberon_slim
synonym: "articulatio humeri" EXACT [FMA:25912, FMA:TA]
synonym: "humeral joint" EXACT [FMA:25912]
synonym: "joint of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder joint" EXACT [MA:0000459]
xref: EMAPA:19105
xref: FMA:25912
xref: GAID:269
xref: galen:ShoulderJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray327.png/200px-Gray327.png
xref: MA:0000459
xref: MESH:A.02.835.583.748
xref: ncithesaurus:Shoulder_Joint
xref: OpenCyc:Mx4rwP32BZwpEbGdrcN5Y29ycA
xref: SCTID:182168000
xref: VHOG:0001002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0008114 ! joint of girdle
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: develops_from UBERON:0006292 {evidence="definitional"} ! shoulder joint primordium
relationship: part_of UBERON:0001467 {source="FMA"} ! shoulder

[Term]
id: UBERON:0001473
name: lymphatic vessel
namespace: uberon
alt_id: UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105
def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel]
subset: uberon_slim
subset: vertebrate_core
synonym: "lymph vessel" EXACT []
xref: AAO:0011005
xref: BTO:0000752
xref: EFO:0000873
xref: FMA:30315
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Illu_lymph_capillary.jpg/200px-Illu_lymph_capillary.jpg
xref: MA:0000138
xref: MAT:0000443
xref: ncithesaurus:Lymphatic_Vessel
xref: OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA
xref: SCTID:279089004
xref: TAO:0005105
xref: VHOG:0001249
xref: XAO:0000375
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000055 ! vessel
disjoint_from: UBERON:0001981 ! blood vessel
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0004536 ! lymph vasculature
relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system

[Term]
id: UBERON:0001474
name: bone
namespace: uberon
alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514
def: "Skeletal element that is composed of bone tissue[VAO]." [VAO:0000057, Wikipedia:Bone]
comment: Alternate definition: Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "bone element" EXACT [VAO:0000057]
synonym: "bone organ" EXACT []
xref: AAO:0000047
xref: AEO:0000082
xref: BTO:0000140
xref: EFO:0000298
xref: EHDAA2:0003082
xref: ENVO:00002039
xref: EV:0100140
xref: FMA:30317
xref: FMA:5018
xref: GAID:92
xref: galen:Bone
xref: MA:0001459
xref: MAT:0000299
xref: MIAA:0000299
xref: ncithesaurus:Bone
xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA
xref: SCTID:272673000
xref: TAO:0001514
xref: VAO:0000057
xref: VHOG:0001190
xref: XAO:0000169
xref: ZFA:0001514
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001015
property_value: "spatially_disjoint_from" UBERON:0001630
property_value: "spatially_disjoint_from" UBERON:0002385
is_a: UBERON:0004765 ! skeletal element
disjoint_from: UBERON:0001630 ! muscle organ
disjoint_from: UBERON:0005090 ! muscle structure
disjoint_from: UBERON:0010538 ! limb/fin segment
relationship: has_part UBERON:0002481 {source="VAO"} ! bone tissue
relationship: part_of UBERON:0001434 ! skeletal system

[Term]
id: UBERON:0001476
name: deltoid
namespace: uberon
alt_id: UBERON:FMA_32521-MA_0002286
def: "Intrinsic muscle of shoulder which attaches to the spine of scapula, clavicle and humerus.[FMA]" [FMA:FMA, Wikipedia:Deltoid_muscle]
subset: uberon_slim
synonym: "deltoid muscle" EXACT [Wikipedia:Deltoid_muscle]
synonym: "deltoideus" RELATED [Wikipedia:Deltoid_muscle]
synonym: "deltoideus muscle" RELATED [Wikipedia:Deltoid_muscle]
xref: EFO:0001412
xref: EHDAA2:0000339
xref: EMAPA:18177
xref: FMA:32521
xref: MA:0002286
xref: ncithesaurus:Deltoid
xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA
xref: VHOG:0000846
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 {source="FMA"} ! muscle of shoulder
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
relationship: attached_to UBERON:0002498 {source="FMA"} ! deltoid tuberosity
relationship: develops_from UBERON:0006219 {source="EHDAA2"} ! deltoid pre-muscle mass
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0001477
name: infraspinatus muscle
namespace: uberon
alt_id: UBERON:FMA_32546-MA_0002323
def: "The Infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [Wikipedia:Infraspinatus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "infraspinatus" EXACT []
xref: EHDAA2:0000826
xref: EHDAA:8305
xref: EMAPA:18526
xref: FMA:32546
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002323
xref: ncithesaurus:Infraspinatus
xref: OpenCyc:Mx4rwVT4_ZwpEbGdrcN5Y29ycA
xref: SCTID:277439009
xref: VHOG:0000921
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder

[Term]
id: UBERON:0001478
name: teres major muscle
namespace: uberon
alt_id: UBERON:FMA_32549-MA_0002392
def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [Wikipedia:Teres_major]
subset: uberon_slim
synonym: "teres major" EXACT [MA:0002392]
xref: EHDAA2:0002004
xref: EHDAA:8321
xref: EMAPA:19069
xref: EMAPA:19110
xref: FMA:32549
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002392
xref: ncithesaurus:Teres_Major_Muscle
xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA
xref: SCTID:277444002
xref: VHOG:0000750
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010467 ! teres muscle
relationship: develops_from UBERON:0010988 {source="EHDAA2"} ! teres major pre-muscle mass

[Term]
id: UBERON:0001479
name: sesamoid bone
namespace: uberon
alt_id: UBERON:FMA_32672-MA_0001375
def: "Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation." [VAO:0000137, Wikipedia:Sesamoid_bone]
comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage.[VAO]
subset: uberon_slim
synonym: "sesamoid" EXACT [VAO:0000137]
xref: AEO:0000086
xref: EHDAA2:0003086
xref: FMA:32672
xref: GAID:210
xref: galen:SessamoidBone
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png
xref: MA:0001375
xref: MESH:A.02.835.232.730
xref: ncithesaurus:Sesamoid_Bone
xref: SCTID:362914002
xref: VAO:0000137
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010911 {source="VAO"} ! ossicle
relationship: develops_in UBERON:0007846 {source="VAO"} ! dense regular collagenous tissue

[Term]
id: UBERON:0001480
name: proximal carpal bone
namespace: uberon
alt_id: UBERON:FMA_33302-MA_0002557
xref: FMA:33302
xref: MA:0002557
xref: SCTID:306715004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001435 ! carpal bone
intersection_of: UBERON:0001435 ! carpal bone
intersection_of: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton
relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton

[Term]
id: UBERON:0001481
name: distal carpal bone
namespace: uberon
alt_id: UBERON:FMA_33303-MA_0002558
comment: Taxon notes: Primitively, each of the distal bones appears to have articulated with a single metacarpal[WP]
synonym: "distal carpal" EXACT [AAO:0000847]
xref: AAO:0000847
xref: FMA:33303
xref: MA:0002558
xref: SCTID:306716003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001435 ! carpal bone
is_a: UBERON:0002513 {source="VAO"} ! endochondral bone
relationship: distally_connected_to UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0009880 ! carpal skeleton

[Term]
id: UBERON:0001482
name: muscle of shoulder
namespace: uberon
alt_id: UBERON:FMA_33531-MA_0000633
def: "A muscle organ that is part of a shoulder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "muscle organ of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder muscle" EXACT []
synonym: "shoulder muscle organ" EXACT [OBOL:automatic]
xref: FMA:33531
xref: MA:0000633
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008196 ! muscle of pectoral girdle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder

[Term]
id: UBERON:0001484
name: articular capsule
namespace: uberon
alt_id: UBERON:FMA_34836-MA_0001519
def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [Wikipedia:Articular_capsule]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "capsula articularis" EXACT [FMA:34836, FMA:TA]
synonym: "fibrous capsule of joint" EXACT []
synonym: "joint capsule" EXACT []
synonym: "joint fibrous capsule" EXACT []
xref: FMA:34836
xref: GAID:263
xref: galen:JointCapsule
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Gray299.png/200px-Gray299.png
xref: MA:0001519
xref: MESH:A.02.835.583.443
xref: ncithesaurus:Joint_Capsule
xref: SCTID:182238002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000094 ! membrane organ
relationship: part_of UBERON:0002217 ! synovial joint

[Term]
id: UBERON:0001485
name: knee joint
namespace: uberon
alt_id: UBERON:FMA_35175-MA_0000471
def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "joint of knee" EXACT [OBOL:automatic]
xref: EFO:0001957
xref: EMAPA:19137
xref: FMA:35175
xref: GAID:114
xref: galen:KneeJoint
xref: MA:0000471
xref: MESH:A.02.835.583.475
xref: ncithesaurus:Knee_Joint
xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA
xref: SCTID:182204005
xref: VHOG:0001003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0004174 ! leg joint
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001465 ! knee
relationship: develops_from UBERON:0006256 {evidence="definitional"} ! knee joint primordium
relationship: part_of UBERON:0001465 ! knee

[Term]
id: UBERON:0001486
name: hip joint
namespace: uberon
alt_id: UBERON:FMA_35178-MA_0000470
def: "." [Wikipedia:Hip_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio coxofemoralis" EXACT []
synonym: "femoro-iliac joint" EXACT []
synonym: "hip region joint" EXACT [OBOL:automatic]
synonym: "joint of hip" EXACT [OBOL:automatic]
synonym: "joint of hip region" EXACT [OBOL:automatic]
synonym: "joint of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae joint" EXACT [OBOL:automatic]
xref: BTO:0001502
xref: EMAPA:19136
xref: FMA:35178
xref: GAID:262
xref: galen:HipJoint
xref: MA:0000470
xref: MESH:A.02.835.583.411
xref: ncithesaurus:Hip_Joint
xref: OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA
xref: SCTID:182201002
xref: VHOG:0001001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0008114 ! joint of girdle
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001464 ! hip
relationship: develops_from UBERON:0006244 {evidence="definitional"} ! hip joint primordium
relationship: part_of UBERON:0001464 {source="FMA"} ! hip

[Term]
id: UBERON:0001487
name: joint of foot
namespace: uberon
alt_id: UBERON:FMA_35194-MA_0000464
def: "A skeletal joint that is part of a foot [Obol]." [OBOL:automatic]
comment: TODO check FMA - use the set class for now
synonym: "articulationes pedis" EXACT [FMA:71349, FMA:TA]
synonym: "autopod of hind limb joint" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb joint" EXACT [OBOL:automatic]
synonym: "autopod of inferior member joint" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity joint" EXACT [OBOL:automatic]
synonym: "foot joint" EXACT []
synonym: "hind limb autopod joint" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "hindlimb autopod joint" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "inferior member autopod joint" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "joint of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "joint of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "joint of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "joint of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "joint of hind limb autopod" EXACT [OBOL:automatic]
synonym: "joint of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "joint of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of inferior member autopod" EXACT [OBOL:automatic]
synonym: "joint of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "joint of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "joints of foot" EXACT [FMA:71349]
synonym: "lower extremity autopod joint" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb joint" EXACT [OBOL:automatic]
xref: FMA:35194
xref: FMA:71349
xref: GAID:256
xref: MA:0000464
xref: MESH:A.02.835.583.378
xref: SCTID:244555001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003840 ! hindlimb joint
is_a: UBERON:0003841 ! autopod joint
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0001488
name: ankle joint
namespace: uberon
alt_id: UBERON:FMA_35195-MA_0000463
def: "In human anatomy, the ankle joint is formed where the foot and the leg meet. The ankle, or talocrural joint, is a synovial hinge joint that connects the distal ends of the tibia and fibula in the lower limb with the proximal end of the talus bone in the foot. The articulation between the tibia and the talus bears more weight than between the smaller fibula and the talus. The term 'ankle' is used to describe structures in the region of the ankle joint proper. [WP,unvetted]." [Wikipedia:Ankle_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "joint of ankle" EXACT [OBOL:automatic]
synonym: "talocrural joint" EXACT []
xref: BTO:0004706
xref: EFO:0001409
xref: FMA:35195
xref: GAID:257
xref: galen:AnkleJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000463
xref: MESH:A.02.835.583.378.062
xref: ncithesaurus:Ankle_Joint
xref: OpenCyc:Mx4rvwiy35wpEbGdrcN5Y29ycA
xref: SCTID:182212002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001487 ! joint of foot
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0004454 ! tarsal region

[Term]
id: UBERON:0001489
name: joint of hand
namespace: uberon
alt_id: UBERON:FMA_35245-MA_0000452
def: "A skeletal joint that is part of a hand [Obol]." [OBOL:automatic]
comment: TODO check FMA - use the set class for now
synonym: "arm autopod joint" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "articulationes manus" EXACT [FMA:71345, FMA:TA]
synonym: "autopod of arm joint" EXACT [OBOL:automatic]
synonym: "autopod of brachial region joint" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb joint" EXACT [OBOL:automatic]
synonym: "brachial region autopod joint" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb joint" EXACT [OBOL:automatic]
synonym: "hand joint" EXACT []
synonym: "joint of arm autopod" EXACT [OBOL:automatic]
synonym: "joint of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of autopod of arm" EXACT [OBOL:automatic]
synonym: "joint of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "joint of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "joint of brachial region autopod" EXACT [OBOL:automatic]
synonym: "joint of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "joint of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "joint of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "joints of hand" EXACT [FMA:71345]
synonym: "proximal segment of free upper limb autopod joint" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb joint" EXACT [OBOL:automatic]
xref: FMA:71345
xref: MA:0000452
xref: SCTID:244546004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! forelimb joint
is_a: UBERON:0003841 ! autopod joint
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0001490
name: elbow joint
namespace: uberon
alt_id: UBERON:FMA_35289-MA_0000451
def: "Synovial joint that is part of the elbow[Obol]. The elbow joint (Articulatio cubiti) is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis[HP]." [Wikipedia:Elbow_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio cubiti" EXACT []
synonym: "cubital region joint" EXACT [OBOL:automatic]
synonym: "joint of cubital region" EXACT [OBOL:automatic]
synonym: "joint of elbow" EXACT [OBOL:automatic]
xref: EMAPA:19102
xref: FMA:35289
xref: GAID:253
xref: galen:ElbowJoint
xref: MA:0000451
xref: MESH:A.02.835.583.290
xref: ncithesaurus:Elbow_Joint
xref: SCTID:182169008
xref: VHOG:0000997
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! forelimb joint
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001461 ! elbow
relationship: develops_from UBERON:0006224 {evidence="definitional"} ! elbow joint primordium
relationship: part_of UBERON:0001461 ! elbow

[Term]
id: UBERON:0001491
name: wrist joint
namespace: uberon
alt_id: UBERON:FMA_35291-MA_0000460
def: "In human anatomy, the wrist is variously defined as (1) the carpus or carpal bones, the complex of eight bones forming the proximal skeletal segment of the hand; (2) the wrist joint or radiocarpal joint, the joint between the radius and the carpus; and (3) the anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum. As a consequence of these various definitions, fractures to the carpal bones are referred to as carpal fractures, while fractures such as distal radius fracture are considered fractures to the wrist. [WP,unvetted]." [Wikipedia:Wrist_joint]
comment: todo - determine the difference between MA:0000460 and MA:0000461
subset: uberon_slim
synonym: "carpal region joint" EXACT [OBOL:automatic]
synonym: "joint of carpal region" EXACT [OBOL:automatic]
synonym: "joint of wrist" EXACT []
synonym: "radio-carpal joint" EXACT [MA:0000461]
synonym: "radiocarpal joint" EXACT [FMA:35291]
xref: EMAPA:19205
xref: FMA:35291
xref: GAID:274
xref: galen:WristJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png
xref: MA:0000460
xref: MA:0000461
xref: MESH:A.02.835.583.959
xref: ncithesaurus:Wrist_Joint
xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA
xref: SCTID:182178002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001489 ! joint of hand
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0004452 ! carpal region

[Term]
id: UBERON:0001495
name: pectoral muscle
namespace: uberon
alt_id: UBERON:FMA_37349-MA_0002423
comment: Note: in FMA isa muscle of pectoral girdle; todo - resolve spatial disjointness inconsistencies and add
subset: uberon_slim
synonym: "breast muscle" RELATED [BTO:0000023]
synonym: "muscle of pectoral part of chest" EXACT [FMA:37349]
synonym: "muscle of pectoral region" EXACT [FMA:37349]
synonym: "pectoralis muscle" RELATED [BTO:0000023]
xref: BTO:0000023
xref: FMA:37349
xref: GAID:153
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png
xref: MA:0002423
xref: MESH:A.02.633.567.775
xref: ncithesaurus:Pectoralis_Muscle
xref: SCTID:181621006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010984 ! pectoral pre-muscle mass
relationship: part_of UBERON:0004464 {source="BTO"} ! musculature of thorax

[Term]
id: UBERON:0001497
name: muscle of pelvic girdle
namespace: uberon
alt_id: UBERON:FMA_37367-MA_0000537
def: "A muscle organ that is part of a pelvic girdle [Obol]." [OBOL:automatic]
comment: AO notes: Note that in MA, this is a subclass of pelvis muscle; in FMA this is a hindlimb muscle, but recall in FMA hindlimb includes the girdle.
synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "muscle organ of pelvic girdle" EXACT [OBOL:automatic]
synonym: "muscle organ of pelvic girdle bone" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone muscle organ" EXACT [OBOL:automatic]
synonym: "pelvic girdle muscle" EXACT []
synonym: "pelvic girdle muscle organ" EXACT [OBOL:automatic]
xref: FMA:37367
xref: MA:0000537
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0004470 ! musculature of pelvic girdle

[Term]
id: UBERON:0001498
name: muscle of foot
namespace: uberon
alt_id: UBERON:FMA_37369-MA_0000652
def: "A muscle organ that is part of a foot [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autopod of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "foot muscle" EXACT []
synonym: "foot muscle organ" EXACT [OBOL:automatic]
synonym: "hind limb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member autopod muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity autopod muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of foot" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic]
xref: BTO:0000477
xref: FMA:37369
xref: MA:0000652
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003663 ! hindlimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0001499
name: muscle of arm
namespace: uberon
alt_id: UBERON:FMA_37370-MA_0000594
def: "A muscle organ that is part of an arm [Obol]." [OBOL:automatic]
comment: See notes on UBERON:0001460 for possible terminological confusion over term 'arm'
synonym: "arm muscle" EXACT [MA:0000594]
synonym: "arm muscle system" RELATED [EHDAA2:0000141]
synonym: "muscle of upper arm or lower arm" EXACT [UBERON:cjm]
synonym: "upper arm / lower arm muscle" EXACT [UBERON:cjm]
xref: EHDAA2:0000141
xref: MA:0000594
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003662 ! forelimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm

[Term]
id: UBERON:0001500
name: muscle of hand
namespace: uberon
alt_id: UBERON:FMA_37372-MA_0000628
def: "A muscle organ that is part of a hand [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arm autopod muscle organ" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of arm muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region autopod muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "hand muscle" EXACT []
synonym: "hand muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of arm autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of hand" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
xref: FMA:37372
xref: MA:0000628
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003662 ! forelimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0001501
name: lumbrical of hand
namespace: uberon
alt_id: UBERON:FMA_37385-MA_0002316
comment: This class was created automatically from a combination of ontologies
synonym: "hand lumbrical" EXACT []
synonym: "hand lumbrical muscle" EXACT []
xref: FMA:37385
xref: MA:0002316
xref: SCTID:181654008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001500 ! muscle of hand

[Term]
id: UBERON:0001502
name: interosseous muscle of hand
namespace: uberon
alt_id: UBERON:FMA_37417-MA_0002313
comment: This class was created automatically from a combination of ontologies
synonym: "hand interosseous muscle" EXACT []
xref: FMA:37417
xref: MA:0002313
xref: ncithesaurus:Hand_Interosseous_Muscle
xref: SCTID:265804003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001500 ! muscle of hand
is_a: UBERON:0006508 ! interosseus muscle
intersection_of: UBERON:0006508 ! interosseus muscle
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0001503
name: dorsal interosseous of hand
namespace: uberon
alt_id: UBERON:FMA_37418-MA_0002314
def: "The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]." [Wikipedia:Dorsal_interossei_of_the_hand]
synonym: "dorsal hand interosseus muscle" EXACT []
xref: FMA:37418
xref: MA:0002314
xref: ncithesaurus:Dorsal_Hand_Interosseous_Muscle
xref: SCTID:245002007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001502 ! interosseous muscle of hand

[Term]
id: UBERON:0001504
name: lumbrical of foot
namespace: uberon
alt_id: UBERON:FMA_37453-MA_0002305
comment: This class was created automatically from a combination of ontologies
synonym: "foot lumbrical" EXACT []
synonym: "foot lumbrical muscle" EXACT []
xref: FMA:37453
xref: MA:0002305
xref: SCTID:181715003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001498 ! muscle of foot

[Term]
id: UBERON:0001505
name: coracobrachialis
namespace: uberon
alt_id: UBERON:FMA_37664-MA_0002282
def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [Wikipedia:Coracobrachialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coracobrachial" EXACT []
synonym: "coracobrachialis muscle" RELATED [Wikipedia:Coracobrachialis_muscle]
synonym: "Pirogoff's aponeurosis" EXACT [FMA:37664]
xref: FMA:37664
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Coracobrachialis.png/200px-Coracobrachialis.png
xref: MA:0002282
xref: ncithesaurus:Coracobrachialis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle

[Term]
id: UBERON:0001506
name: brachialis
namespace: uberon
alt_id: UBERON:FMA_37667-MA_0002271
def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [Wikipedia:Brachialis_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brachialis anticus muscle" RELATED [Wikipedia:Brachialis_muscle]
synonym: "brachialis muscle" RELATED [Wikipedia:Brachialis_muscle]
synonym: "Casserio's muscle" EXACT []
xref: EHDAA2:0000181
xref: EHDAA:8281
xref: EMAPA:19068
xref: EMAPA:19109
xref: FMA:37667
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Brachialis.png/200px-Brachialis.png
xref: MA:0002271
xref: ncithesaurus:Brachialis
xref: VHOG:0001026
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001499 ! muscle of arm

[Term]
id: UBERON:0001507
name: biceps brachii
namespace: uberon
alt_id: UBERON:FMA_37670-MA_0002269
def: "In human anatomy, the biceps brachii is a muscle located on the upper arm. The biceps has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [Wikipedia:Biceps_brachii_muscle]
subset: uberon_slim
synonym: "biceps" BROAD [EHDAA2:0000167]
synonym: "biceps brachii %26 brachialis muscles" RELATED [Wikipedia:Biceps_brachii_muscle]
synonym: "biceps brachii muscle" RELATED [Wikipedia:Biceps_brachii_muscle]
synonym: "biceps cubiti" RELATED [Wikipedia:Biceps_brachii_muscle]
synonym: "biceps muscle" RELATED [Wikipedia:Biceps_brachii_muscle]
xref: BTO:0003419
xref: EHDAA2:0000167
xref: EHDAA:8279
xref: EMAPA:19067
xref: EMAPA:19108
xref: FMA:37670
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Biceps_%28PSF%29.jpg/200px-Biceps_%28PSF%29.jpg
xref: MA:0002269
xref: ncithesaurus:Biceps
xref: SCTID:265802004
xref: VHOG:0000861
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 {source="MA"} ! muscle organ
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: part_of UBERON:0003822 {source="OG"} ! forelimb stylopod

[Term]
id: UBERON:0001509
name: triceps brachii
namespace: uberon
alt_id: UBERON:FMA_37688-MA_0002399
def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [Wikipedia:Triceps_brachii]
subset: uberon_slim
synonym: "triceps" EXACT [EHDAA2:0002080]
synonym: "triceps brachii" RELATED [Wikipedia:Triceps_brachii_muscle]
synonym: "triceps muscle" RELATED [Wikipedia:Triceps_brachii_muscle]
xref: EHDAA2:0002080
xref: EHDAA:8287
xref: EMAPA:19070
xref: FMA:37688
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Triceps_brachii.png/200px-Triceps_brachii.png
xref: MA:0002399
xref: ncithesaurus:Triceps
xref: SCTID:181623009
xref: VHOG:0000851
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 {source="MA"} ! muscle organ
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: part_of UBERON:0003822 {source="OG"} ! forelimb stylopod

[Term]
id: UBERON:0001520
name: pronator teres
namespace: uberon
alt_id: UBERON:FMA_38450-MA_0002357
def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [Wikipedia:Pronator_teres]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38450
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Pronator-teres.png/200px-Pronator-teres.png
xref: MA:0002357
xref: ncithesaurus:Pronator_Teres
xref: SCTID:302514000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003662 ! forelimb muscle
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0001521
name: flexor carpi radialis
namespace: uberon
alt_id: UBERON:FMA_38459-MA_0002297
def: "In anatomy, flexor carpi radialis is a muscle of the human forearm that acts to flex and abduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_radialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38459
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Flexor-carpi-radialis.png/200px-Flexor-carpi-radialis.png
xref: MA:0002297
xref: ncithesaurus:Flexor_Carpi_Radialis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: part_of UBERON:0003822 ! forelimb stylopod

[Term]
id: UBERON:0001522
name: flexor carpi ulnaris
namespace: uberon
alt_id: UBERON:FMA_38465-MA_0002298
def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_ulnaris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38465
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/FCU.png/200px-FCU.png
xref: MA:0002298
xref: ncithesaurus:Flexor_Carpi_Ulnaris
xref: SCTID:244985003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: part_of UBERON:0003822 ! forelimb stylopod

[Term]
id: UBERON:0001523
name: flexor digitorum profundus
namespace: uberon
alt_id: UBERON:FMA_38478-MA_0002300
def: "In human anatomy, the flexor digitorum profundus is a muscle in the forearm that flexes the fingers. It is considered to be an extrinsic muscle because its action is at a different location than the main body of the muscle. Flexor digitorum profundus, along with flexor digitorum superficialis have long tendons that run down the arm and through the carpal tunnel and attach to the palmar side of the phalanges of the fingers. This muscle originates from the upper 3/4ths anterior and medial side of the ulna. Flexor digitorum profundus lies deep to superficialis, but it attaches more distally. To get around this problem profundus's tendons go through the tendons of superficialis, and end up attaching to the distal phalanx. [WP,unvetted]." [Wikipedia:Flexor_digitorum_profundus]
comment: Note that in EMAPA, this is part of the leg, which is presumably a mistake
subset: uberon_slim
xref: BTO:0001246
xref: EMAPA:19319
xref: FMA:38478
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Flexor-digitorum-profundis.png/200px-Flexor-digitorum-profundis.png
xref: MA:0002300
xref: ncithesaurus:Flexor_Digitorum_Profundus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000366 {source="BTO"} ! flexor muscle
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: part_of UBERON:0003822 {source="FMA"} ! forelimb stylopod

[Term]
id: UBERON:0001524
name: extensor carpi radialis longus
namespace: uberon
alt_id: UBERON:FMA_38494-MA_0002291
def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38494
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/ECR-longus.png/200px-ECR-longus.png
xref: MA:0002291
xref: ncithesaurus:Extensor_Carpi_Radialis_Longus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001500 ! muscle of hand
relationship: part_of UBERON:0004452 ! carpal region

[Term]
id: UBERON:0001525
name: extensor carpi radialis brevis
namespace: uberon
alt_id: UBERON:FMA_38497-MA_0002290
def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_brevis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38497
xref: MA:0002290
xref: ncithesaurus:Extensor_Carpi_Radialis_Brevis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001500 ! muscle of hand
relationship: part_of UBERON:0004452 ! carpal region

[Term]
id: UBERON:0001526
name: extensor carpi ulnaris
namespace: uberon
alt_id: UBERON:FMA_38506-MA_0002292
def: "Extensor carpi ulnaris is a muscle located in the human forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP,unvetted]." [Wikipedia:Extensor_carpi_ulnaris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38506
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray418.png/200px-Gray418.png
xref: MA:0002292
xref: ncithesaurus:Extensor_Carpi_Ulnaris
xref: SCTID:244992008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001500 ! muscle of hand
relationship: part_of UBERON:0004452 ! carpal region

[Term]
id: UBERON:0001527
name: abductor pollicis longus
namespace: uberon
alt_id: UBERON:FMA_38515-MA_0002266
def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [Wikipedia:Abductor_pollicis_longus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "abductor pollicis longus muscle" RELATED [Wikipedia:Abductor_pollicis_longus_muscle]
xref: FMA:38515
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray1231.png/200px-Gray1231.png
xref: MA:0002266
xref: ncithesaurus:Abductor_Pollicis_Longus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003662 ! forelimb muscle
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0001528
name: radio-ulnar joint
namespace: uberon
alt_id: UBERON:FMA_38863-MA_0000462
def: "The forearm is the structure and distal region of the upper limb, between the elbow and the wrist.. The term forearm is used in anatomy to distinguish it from the arm which is often misused to describe the entire appendage of the upper limb and technically means only the region of the upper arm whereas the lower 'arm' is called the forearm. It is homologous to the leg that lies between the knee and the ankle joints. [WP,unvetted]." [Wikipedia:Radio-ulnar_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "radioulnar joint" EXACT []
xref: EMAPA:19206
xref: FMA:38863
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png
xref: MA:0000462
xref: OpenCyc:Mx4rvlO2nJwpEbGdrcN5Y29ycA
xref: SCTID:264167003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001491 ! wrist joint

[Term]
id: UBERON:0001555
name: digestive tract
namespace: uberon
alt_id: UBERON:FMA_45615-MA_0000917-ZFA_0000112
def: "Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk:Human_gastrointestinal_tract, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855]
comment: GO says gut is region of DT, from intestines to anus. ZFA treats as synonym for alimentary canal, and treats it as the sum of DT + organs (ZF has no term from stomach). GO says intestines to anus (excludes stomach and esophagus). MA appears to agree with GO (stomach and esophagus are not parts). FMA includes stomach and esophagus as parts of gut -- the FMA divides gut into lower and upper GI tract; it's not clear if this is exhaustive (small intestine is in neither), but lower GI tract may correspond better to the GO definition. NOTE: GO now changed, see sf id in def xref. Note that FMA also has a term 'gastrointestinal tract', but this includes the liver
subset: uberon_slim
subset: vertebrate_core
synonym: "alimentary canal" EXACT []
synonym: "digestive tube" RELATED []
synonym: "enteric tract" EXACT [ZFA:0000112]
synonym: "gut" BROAD []
synonym: "gut tube" RELATED []
xref: AAO:0010023
xref: BILA:0000083
xref: BTO:0000511
xref: BTO:0000545
xref: EHDAA2:0000726
xref: EHDAA:518
xref: EMAPA:16247
xref: FBbt:00003125
xref: FMA:45615
xref: galen:AlimentaryTract
xref: ncithesaurus:Gastrointestinal_Tract
xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA
xref: TAO:0000112
xref: TGMA:0001819
xref: VHOG:0000309
xref: WBbt:0005743
xref: ZFA:0000112
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0007026 ! primitive gut
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0001556
name: lower urinary tract
namespace: uberon
alt_id: UBERON:FMA_45659-MA_0002636
def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." []
comment: TODO - add superclass urinary tract?
subset: uberon_slim
xref: FMA:45659
xref: galen:LowerUrinaryTract
xref: MA:0002636
xref: SCTID:181420004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008 ! excretory system

[Term]
id: UBERON:0001557
name: upper respiratory tract
namespace: uberon
alt_id: UBERON:FMA_45661-MA_0000442
def: "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0002136
xref: EMAPA:17669
xref: FMA:45661
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000442
xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
xref: SCTID:361381009
xref: VHOG:0000406
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000072 ! segment of respiratory tract

[Term]
id: UBERON:0001558
name: lower respiratory tract
namespace: uberon
alt_id: UBERON:FMA_45662-MA_0000435
def: "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001036
xref: EMAPA:16738
xref: FMA:45662
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000435
xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g
xref: SCTID:281488008
xref: VHOG:0000382
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000072 ! segment of respiratory tract

[Term]
id: UBERON:0001560
name: neck of organ
namespace: uberon
alt_id: UBERON:FMA_45733-MA_0000589
synonym: "organ neck" EXACT []
xref: FMA:45733
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part

[Term]
id: UBERON:0001562
name: digastric
namespace: uberon
alt_id: UBERON:FMA_46291-MA_0002288
def: "The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]." [Wikipedia:Digastric_muscle]
subset: uberon_slim
synonym: "digastric muscle" RELATED [Wikipedia:Digastric_muscle]
synonym: "digastricus" RELATED [Wikipedia:Digastric_muscle]
synonym: "digastricus muscle" RELATED [Wikipedia:Digastric_muscle]
synonym: "musculus digastricus" RELATED [Wikipedia:Digastric_muscle]
xref: EMAPA:25134
xref: FMA:46291
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Digastricus.png/200px-Digastricus.png
xref: MA:0002288
xref: ncithesaurus:Digastric_Muscle
xref: SCTID:244825002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle

[Term]
id: UBERON:0001563
name: longus capitis
namespace: uberon
alt_id: UBERON:FMA_46308-MA_0002340
def: "The longus capitis (rectus capitis anticus major), broad and thick above, narrow below, arises by four tendinous slips, from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae, and ascends, converging toward its fellow of the opposite side, to be inserted into the inferior surface of the basilar part of the occipital bone. It is innervated by a branch of cervical plexus. [WP,unvetted]." [Wikipedia:Longus_capitis]
subset: uberon_slim
synonym: "longus capitus muscle" RELATED [Wikipedia:Longus_capitis_muscle]
synonym: "rectus capitis anticus major" RELATED [Wikipedia:Longus_capitis_muscle]
xref: EMAPA:25131
xref: FMA:46308
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Longus_capitis.png/200px-Longus_capitis.png
xref: MA:0002340
xref: ncithesaurus:Longus_Capitis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0001564
name: mylohyoid
namespace: uberon
alt_id: UBERON:FMA_46320-MA_0002344
def: "The mylohyoid muscle is a muscle running from the mandible to the hyoid bone, forming the floor of the oral cavity. These muscles are mesodermal in origin." [Wikipedia:Mylohyoid_muscle]
comment: mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3
subset: uberon_slim
synonym: "musculus mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoid muscle" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoideus muscle" EXACT [Wikipedia:Mylohyoid_muscle]
xref: FMA:46320
xref: MA:0002344
xref: ncithesaurus:Mylohyoid
xref: SCTID:244827005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle
relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm

[Term]
id: UBERON:0001565
name: geniohyoid
namespace: uberon
alt_id: UBERON:FMA_46325-MA_0002308
def: "A narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]." [Wikipedia:Geniohyoid_muscle]
comment: Taxon notes: "Muscle that pulls the hyoid apparatus forward and depresses the lower jaw." [AAO:0010655]
subset: uberon_slim
synonym: "genio-hyoideus" EXACT []
synonym: "genio-hyoideus muscle" EXACT []
synonym: "geniohyoid muscle" RELATED [Wikipedia:Geniohyoid_muscle]
synonym: "geniohyoideus" RELATED [Wikipedia:Geniohyoid_muscle]
synonym: "geniohyoideus muscle" EXACT [Wikipedia:Geniohyoid_muscle]
xref: AAO:0010655
xref: FMA:46325
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Geniohyoid_muscle.PNG/200px-Geniohyoid_muscle.PNG
xref: MA:0002308
xref: ncithesaurus:Geniohyoid
xref: SCTID:244828000
xref: XAO:0004127
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle

[Term]
id: UBERON:0001566
name: cricothyroid muscle
namespace: uberon
alt_id: UBERON:FMA_46417-MA_0002284
def: "The cricothyroid muscle attaches to the anterolateral aspect of the cricoid and the inferior cornu and lower lamina of the thyroid cartilage, tilting the thyroid forwards and tensing the vocal cords. It is the only laryngeal muscle supplied by the external branch of the superior laryngeal nerve (rather than the recurrent laryngeal nerve). [WP,unvetted]." [Wikipedia:Cricothyroid_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cricothyroid" EXACT []
synonym: "cricothyroideus" EXACT []
synonym: "musculus cricothyroideus" EXACT [FMA:46417, FMA:TA]
xref: EMAPA:19270
xref: FMA:46417
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Musculuscricothyreoideus.png/200px-Musculuscricothyreoideus.png
xref: MA:0002284
xref: ncithesaurus:Cricothyroid_Muscle
xref: SCTID:244809007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006328 ! laryngeal intrinsic muscle

[Term]
id: UBERON:0001567
name: cheek
namespace: uberon
alt_id: UBERON:FMA_46476-MA_0002475
def: "Cheeks constitute the area of the face below the eyes and between the nose and the left or right ear. It is fleshy in humans and other mammals, the skin being suspended by the chin and the jaws, and forming the lateral wall of the human mouth, visibly touching the cheekbone below the eye. In vertebrates, markings on the cheek area (malar stripes/spots/... ), particularly immediately beneath the eye, often serve as important distinguishing features between species or individuals. 'Buccal' means relating to the cheek. In humans, the region is innervated by the buccal nerve. The inside of the cheek (forming part of the mouth cavity) is lined with a mucous membrane. It is the most common location from which a DNA sample can be taken (during a cheek swab). The cheeks are covered externally by hairy skin, and internally by stratified squamous epithelium. This is mostly smooth, but may have aborally directed papillae . The mucosa is supplied with secretions from the Buccal glands, which are arranged in superior and inferior groups. In carnivores, the superior buccal gland is large and discrete: the Zygomatic gland. During mastication (chewing), the cheeks and tongue between them serve to keep the food between the teeth. [WP,unvetted]." [Wikipedia:Cheek]
subset: uberon_slim
synonym: "cheek" BROAD []
xref: BTO:0001754
xref: FMA:46476
xref: GAID:65
xref: galen:Cheek
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Chica_cachetona.jpg/200px-Chica_cachetona.jpg
xref: MA:0002475
xref: MESH:A.01.456.505.173
xref: ncithesaurus:Cheek
xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA
xref: SCTID:182325008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0004089 ! midface

[Term]
id: UBERON:0001568
name: muscle of larynx
namespace: uberon
alt_id: UBERON:FMA_46562-MA_0001768
def: "the muscles associated with the larynx." [MP:0002263]
comment: This class was created automatically from a combination of ontologies
synonym: "laryngeal muscle" EXACT []
synonym: "larynx muscle" EXACT []
synonym: "larynx muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of larynx" EXACT [OBOL:automatic]
xref: BTO:0001626
xref: FMA:46562
xref: GAID:144
xref: MA:0001768
xref: MESH:A.02.633.567.500
xref: ncithesaurus:Laryngeal_Muscle
xref: SCTID:181744001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx

[Term]
id: UBERON:0001569
name: constrictor muscle of pharynx
namespace: uberon
alt_id: UBERON:FMA_46620-MA_0002278
comment: TODO - evaluate taxonomic specificity - functional definition?
subset: uberon_slim
synonym: "pharyngeal constrictor muscle" EXACT []
xref: EMAPA:18964
xref: FMA:46620
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Musculusconstrictorpharyngissuperior.png/200px-Musculusconstrictorpharyngissuperior.png
xref: MA:0002278
xref: SCTID:244799007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0001570
name: inferior pharyngeal constrictor
namespace: uberon
alt_id: UBERON:FMA_46623-MA_0002279
def: "The Inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor]
subset: uberon_slim
synonym: "constrictor inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "constrictor pharyngis inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "constrictores pharyngis caudales" EXACT []
synonym: "inferior constrictor" EXACT [FMA:46623]
synonym: "inferior constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "inferior constrictor muscle" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "inferior constrictor of pharynx" EXACT [FMA:46623]
synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623]
synonym: "inferior pharyngeal constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:TA]
synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:46623, FMA:TA]
xref: FMA:46623
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Musculusconstrictorpharyngisinferior.png/200px-Musculusconstrictorpharyngisinferior.png
xref: MA:0002279
xref: SCTID:244803008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001569 ! constrictor muscle of pharynx

[Term]
id: UBERON:0001571
name: genioglossus
namespace: uberon
alt_id: UBERON:FMA_46690-MA_0002307
def: "Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue." [VHOG:0000847, Wikipedia:Genioglossus]
comment: taxon notes: Makes up bulk of tongue in frogs and salamanders; makes up entire tongue in caecilians. [AAO:0010660]
subset: uberon_slim
synonym: "genioglossus muscle" EXACT []
xref: AAO:0010660
xref: EHDAA2:0000704
xref: EHDAA:9150
xref: EMAPA:18276
xref: EMAPA:18881
xref: FMA:46690
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Genioglossus.png/200px-Genioglossus.png
xref: MA:0002307
xref: ncithesaurus:Genioglossus
xref: SCTID:244784007
xref: VHOG:0000847
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue
relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0001572
name: hyoglossus
namespace: uberon
alt_id: UBERON:FMA_46691-MA_0002317
def: "The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]." [Wikipedia:Hyoglossus]
subset: uberon_slim
synonym: "hyoglossus muscle" EXACT [Wikipedia:Hyoglossus]
xref: AAO:0010663
xref: EMAPA:18277
xref: EMAPA:18882
xref: FMA:46691
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Hyoglossus.png/200px-Hyoglossus.png
xref: MA:0002317
xref: ncithesaurus:Hyoglossus_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue

[Term]
id: UBERON:0001573
name: styloglossus
namespace: uberon
alt_id: UBERON:FMA_46692-MA_0002387
def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus]
subset: uberon_slim
synonym: "syloglossus muscle" EXACT []
xref: EMAPA:18279
xref: EMAPA:18884
xref: FMA:46692
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Styloglossus.png/200px-Styloglossus.png
xref: MA:0002387
xref: ncithesaurus:Styloglossus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue

[Term]
id: UBERON:0001574
name: palatoglossus
namespace: uberon
alt_id: UBERON:FMA_46697-MA_0002351
def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]." [Wikipedia:Palatoglossus]
subset: uberon_slim
synonym: "palatoglossal muscle" EXACT []
xref: EMAPA:18278
xref: EMAPA:18883
xref: FMA:46697
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray1028.png/200px-Gray1028.png
xref: MA:0002351
xref: SCTID:244783001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003682 ! palatal muscle

[Term]
id: UBERON:0001575
name: extrinsic muscle of tongue
namespace: uberon
alt_id: UBERON:FMA_46699-MA_0002296
comment: This class was created automatically from a combination of ontologies
synonym: "extrinsic tongue muscle" EXACT []
xref: EHDAA2:0002063
xref: EHDAA:9148
xref: FMA:46699
xref: MA:0002296
xref: SCTID:244782006
xref: VHOG:0000825
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000378 ! tongue muscle

[Term]
id: UBERON:0001576
name: intrinsic muscle of tongue
namespace: uberon
alt_id: UBERON:FMA_46701-MA_0002327
comment: This class was created automatically from a combination of ontologies
synonym: "intrinsic lingual muscle" EXACT []
synonym: "intrinsic tongue muscle" EXACT []
xref: EHDAA2:0002064
xref: EHDAA:9152
xref: FMA:46701
xref: MA:0002327
xref: SCTID:244788005
xref: VHOG:0000748
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000378 ! tongue muscle

[Term]
id: UBERON:0001577
name: muscle of face
namespace: uberon
alt_id: UBERON:FMA_46751-XAO_0001013
def: "The facial muscles are a group of striated muscles innervated by the facial nerve that, among other things, control facial expression. These muscles are also called mimetic muscles. [WP,unvetted]." [Wikipedia:Facial_muscle]
comment: Check the MA class cranial/facial muscle
subset: uberon_slim
synonym: "face muscle" EXACT []
synonym: "face muscle organ" EXACT [OBOL:automatic]
synonym: "facial muscle" EXACT []
synonym: "muscle organ of face" EXACT [OBOL:automatic]
xref: EMAPA:25133
xref: FMA:46751
xref: GAID:143
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray378.png/200px-Gray378.png
xref: MA:0000579
xref: MESH:A.02.633.567.400
xref: ncithesaurus:Facial_Muscle
xref: SCTID:25903009
xref: XAO:0001013
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0004473 ! musculature of face

[Term]
id: UBERON:0001578
name: orbicularis oculi
namespace: uberon
alt_id: UBERON:FMA_46779-MA_0001254
def: "The 'orbicularis oculi' is a muscle in the face that closes the eyelids. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]." [Wikipedia:Orbicularis_oculi]
subset: uberon_slim
synonym: "orbicularis oculi muscle" RELATED [Wikipedia:Orbicularis_oculi_muscle]
synonym: "tensor tarsi" RELATED [Wikipedia:Orbicularis_oculi_muscle]
xref: FMA:46779
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray379.png/200px-Gray379.png
xref: MA:0001254
xref: ncithesaurus:Orbicularis_Oculi
xref: SCTID:244726006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001577 ! muscle of face
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001601 ! extra-ocular muscle

[Term]
id: UBERON:0001580
name: levator labii superioris
namespace: uberon
alt_id: UBERON:FMA_46805-MA_0002333
def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [Wikipedia:Levator_labii_superioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46805
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/Levator_labii_superioris.png/200px-Levator_labii_superioris.png
xref: MA:0002333
xref: ncithesaurus:Levator_Labii_Superioris
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 ! muscle of face

[Term]
id: UBERON:0001581
name: depressor labii inferioris
namespace: uberon
alt_id: UBERON:FMA_46816-MA_0002287
def: "The depressor labii inferioris (or quadratus labii inferioris) is a facial muscle that helps lower the bottom lip. [WP,unvetted]." [Wikipedia:Depressor_labii_inferioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46816
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Depressor_labii_inferioris.png/200px-Depressor_labii_inferioris.png
xref: MA:0002287
xref: ncithesaurus:Depressor_Labii_Inferioris
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 ! muscle of face

[Term]
id: UBERON:0001582
name: buccinator
namespace: uberon
alt_id: UBERON:FMA_46834-MA_0002272
def: "a thin quadrilateral muscle, occupying the interval between the maxilla and the mandible at the side of the face." [Wikipedia:Buccinator_muscle]
subset: uberon_slim
synonym: "buccinator muscle" EXACT []
synonym: "buccinatorius" EXACT []
synonym: "musculus buccinator" EXACT []
xref: FMA:46834
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Buccinator.jpg/200px-Buccinator.jpg
xref: MA:0002272
xref: ncithesaurus:Buccinator
xref: SCTID:244747005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0001583
name: extrinsic auricular muscle
namespace: uberon
alt_id: UBERON:FMA_46854-MA_0001230
xref: FMA:46854
xref: MA:0001230
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001595 {source="FMA"} ! auricular muscle

[Term]
id: UBERON:0001595
name: auricular muscle
namespace: uberon
alt_id: UBERON:FMA_48966-MA_0001229
def: "The auriculares muscles are the three muscles surrounding the auricula or outer ear: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,unvetted]." [Wikipedia:Auriculares_muscles]
synonym: "attolens aurem muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "attrahens aurem muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares anterior" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares muscles" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis muscles" RELATED [Wikipedia:Auricular_muscles]
synonym: "muscle of auricle" EXACT []
synonym: "temporoparietalis" RELATED [Wikipedia:Auricular_muscles]
xref: FMA:48966
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray906.png/200px-Gray906.png
xref: MA:0001229
xref: SCTID:244757006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001757 {source="MA"} ! pinna

[Term]
id: UBERON:0001596
name: intrinsic auricular muscle
namespace: uberon
alt_id: UBERON:FMA_48967-MA_0001231
xref: FMA:48967
xref: MA:0001231
xref: SCTID:244762007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001595 {source="FMA"} ! auricular muscle
relationship: part_of UBERON:0001595 ! auricular muscle

[Term]
id: UBERON:0001597
name: masseter muscle
namespace: uberon
alt_id: UBERON:FMA_48996-MA_0002343
def: "In human anatomy, the masseter is one of the muscles of mastication. In the animal kingdom, it is particularly powerful in herbivores to facilitate chewing of plant matter. [WP,unvetted]." [Wikipedia:Masseter]
subset: uberon_slim
synonym: "masseter" RELATED [BTO:0001755]
xref: BTO:0001755
xref: EFO:0001424
xref: EHDAA2:0001067
xref: EHDAA:10561
xref: EMAPA:25135
xref: FMA:48996
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/78/Illu_head_neck_muscle.jpg/200px-Illu_head_neck_muscle.jpg
xref: MA:0002343
xref: MESH:A.02.633.567.600.500
xref: ncithesaurus:Masseter_Muscle
xref: SCTID:181738000
xref: VHOG:0000823
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 ! muscle of face
is_a: UBERON:0003681 {source="FMA"} ! masticatory muscle
relationship: part_of UBERON:0001567 {source="FMA"} ! cheek

[Term]
id: UBERON:0001598
name: temporalis muscle
namespace: uberon
alt_id: UBERON:FMA_49006-MA_0002390
def: "The temporal muscle is one of the muscles of mastication. [WP,unvetted]." [Wikipedia:Temporalis]
subset: uberon_slim
synonym: "musculus temporalis" EXACT [FMA:49006, FMA:TA]
synonym: "temporal muscle" EXACT []
synonym: "temporalis" EXACT [MA:0002390]
xref: EHDAA2:0002001
xref: EHDAA:10565
xref: EMAPA:25138
xref: FMA:49006
xref: GAID:148
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Gray382.png/200px-Gray382.png
xref: MA:0002390
xref: MESH:A.02.633.567.600.850
xref: ncithesaurus:Temporal_Muscle
xref: VHOG:0000929
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003681 ! masticatory muscle
relationship: part_of UBERON:0001444 ! subdivision of head

[Term]
id: UBERON:0001599
name: stapedius
namespace: uberon
alt_id: UBERON:FMA_49027-MA_0001220
def: "The stapedius is the smallest skeletal muscle in the human body. At just over one millimeter in length, its purpose is to stabilize the smallest bone in the body, the stapes. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius]
subset: uberon_slim
synonym: "stapedius muscle" EXACT [EHDAA2:0001909]
xref: EHDAA:9029
xref: EMAPA:18586
xref: FMA:49027
xref: GAID:164
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Musculusstapedius.png/200px-Musculusstapedius.png
xref: MA:0001220
xref: MESH:A.02.633.567.950
xref: ncithesaurus:Stapedius_Muscle
xref: SCTID:244780003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004113 ! muscle of auditory ossicle
relationship: develops_from UBERON:0010929 ! stapedius pre-muscle condensation
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0001600
name: tensor tympani
namespace: uberon
alt_id: UBERON:FMA_49028-MA_0001221
def: "the larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani]
subset: uberon_slim
synonym: "eustachian muscle" EXACT []
synonym: "m tensor tympani" RELATED [Wikipedia:Tensor_tympani_muscle]
synonym: "tensor tympani muscle" RELATED [Wikipedia:Tensor_tympani_muscle]
synonym: "tympanic muscle" RELATED [Wikipedia:Tensor_tympani_muscle]
xref: EHDAA2:0002002
xref: EHDAA:10167
xref: EHDAA:10191
xref: EMAPA:18587
xref: FMA:49028
xref: GAID:166
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray912.png/200px-Gray912.png
xref: MA:0001221
xref: MESH:A.02.633.567.975
xref: ncithesaurus:Tensor_Tympani
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head
is_a: UBERON:0004112 ! muscle of middle ear
is_a: UBERON:0004113 ! muscle of auditory ossicle
relationship: develops_from UBERON:0010935 ! tensor tympani pre-muscle condensation
relationship: part_of UBERON:0004114 ! tympanic cavity

[Term]
id: UBERON:0001601
name: extra-ocular muscle
namespace: uberon
alt_id: UBERON:0006229
alt_id: UBERON:FMA_49033-MA_0000271
def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles]
comment: AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles.
subset: uberon_slim
subset: vertebrate_core
synonym: "extra-ocular skeletal muscle" EXACT []
synonym: "extraocular muscle" EXACT [FMA:49033]
synonym: "extraocular musculature" EXACT [ZFA:0000511]
synonym: "extraocular skeletal muscle" EXACT [MA:0001271]
synonym: "extrinsic eye muscle" EXACT [Obol:automatic]
synonym: "extrinsic muscle of eyeball" EXACT [FMA:49033]
synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482]
xref: AAO:0010028
xref: BTO:0001579
xref: EFO:0001921
xref: EHDAA2:0000482
xref: EHDAA:5729
xref: EMAPA:18234
xref: FMA:49033
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg
xref: MA:0001271
xref: SCTID:181150000
xref: TAO:0000511
xref: VHOG:0000549
xref: ZFA:0000511
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004277 {source="MA"} ! eye muscle
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0006230 {source="EHDAA2"} ! extrinsic ocular pre-muscle mass
relationship: has_part UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle of eye

[Term]
id: UBERON:0001602
name: medial rectus
namespace: uberon
alt_id: UBERON:0004836
alt_id: UBERON:FMA_49037-ZFA_0000301
def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus]
comment: Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127]
subset: uberon_slim
subset: vertebrate_core
synonym: "medial rectus extraocular muscle" EXACT [MA:0001281]
synonym: "medial rectus muscle" EXACT []
xref: FMA:49037
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: MA:0001281
xref: ncithesaurus:Medial_Rectus_Muscle
xref: SCTID:181151001
xref: TAO:0000301
xref: VHOG:0001127
xref: ZFA:0000301
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
relationship: part_of UBERON:0002376 ! muscle of head

[Term]
id: UBERON:0001603
name: lateral rectus extra-ocular muscle
namespace: uberon
alt_id: UBERON:0004837
alt_id: UBERON:FMA_49038-ZFA_0000383
def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus]
subset: uberon_slim
subset: vertebrate_core
synonym: "lateral rectus" EXACT [FMA:49038]
synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280]
synonym: "lateral rectus muscle" EXACT []
synonym: "M. rectus lateralis" EXACT []
synonym: "musculus rectus lateralis" EXACT [AAO:0010107]
xref: AAO:0010107
xref: FMA:49038
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: MA:0001280
xref: ncithesaurus:Lateral_Rectus_Muscle
xref: SCTID:181152008
xref: TAO:0000383
xref: VHOG:0001129
xref: ZFA:0000383
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
disjoint_from: UBERON:0003250 ! rectus capitis lateralis

[Term]
id: UBERON:0001604
name: levator palpebrae superioris
namespace: uberon
alt_id: UBERON:FMA_49041-MA_0001272
def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris]
subset: uberon_slim
xref: FMA:49041
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: MA:0001272
xref: ncithesaurus:Levator_Palpebrae_Superioris
xref: SCTID:244774006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001601 {source="FMA"} ! extra-ocular muscle
is_a: UBERON:0003660 ! eyelid muscle
relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid

[Term]
id: UBERON:0001605
name: ciliary muscle
namespace: uberon
alt_id: UBERON:FMA_49151-MA_0001269
def: "The ciliary muscle is a smooth muscle in the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bowman`s muscles" RELATED [BTO:0000654]
synonym: "musculus ciliarus" EXACT [BTO:0000654]
xref: BTO:0000654
xref: FMA:49151
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray872.png/200px-Gray872.png
xref: MA:0001269
xref: ncithesaurus:Ciliary_Muscle
xref: SCTID:280862009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001601 ! extra-ocular muscle
relationship: part_of UBERON:0001775 ! ciliary body

[Term]
id: UBERON:0001606
name: muscle of iris
namespace: uberon
alt_id: UBERON:FMA_49154-MA_0001287
def: "." [Wikipedia:Iris_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "iris muscle" EXACT []
synonym: "iris muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of iris" EXACT [OBOL:automatic]
xref: FMA:49154
xref: MA:0001287
xref: SCTID:280888007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004277 ! eye muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris

[Term]
id: UBERON:0001607
name: sphincter pupillae
namespace: uberon
alt_id: UBERON:FMA_49157-MA_0001289
def: "The iris sphincter muscle (pupillary sphincter, circular muscle of iris, circular fibers) is a muscle in the part of the eye called the iris. It encircles the eye, appropriate to its function as a constrictor. It is found in vertebrates and some cephalopods. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]." [Wikipedia:Sphincter_pupillae]
comment: Taxon notes: WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure. Function notes: constricts iris
subset: uberon_slim
synonym: "circular fibers" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "constrictor pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris constrictor" RELATED []
synonym: "iris constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris sphincter" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris sphincter muscle" EXACT [BTO:0000656]
synonym: "M. sphincter pupillae" EXACT []
synonym: "musculus sphincter pupillae" EXACT [BTO:0000656]
synonym: "pupillary constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "pupillary sphincter" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "pupillary sphincter muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "sphincter muscle of pupil" EXACT [BTO:0000656]
synonym: "sphincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "sphincter pupillae muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "spincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
xref: BTO:0000656
xref: FMA:49157
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png
xref: MA:0001289
xref: ncithesaurus:Sphincter_Pupillae_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle
is_a: UBERON:0007521 ! smooth muscle sphincter
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris

[Term]
id: UBERON:0001608
name: dilatator pupillae
namespace: uberon
alt_id: UBERON:FMA_49158-MA_0001288
def: "The iris dilator muscle (pupil dilator muscle, pupillary dilator, radial muscle of iris, radiating fibers), is a smooth muscle of the eye, running radially in the iris and therefore fit as a dilator. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on α1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina. [WP,unvetted]." [Wikipedia:Dilator_pupillae, Wikipedia:Iris_dilator_muscle]
subset: uberon_slim
synonym: "dilator muscle of pupil" EXACT []
synonym: "dilator of pupil" EXACT []
synonym: "dilator pupillae" EXACT []
synonym: "dilator pupillae muscle" RELATED [BTO:0001371]
synonym: "iris dilator" RELATED []
synonym: "iris dilator muscle" EXACT [BTO:0001371]
synonym: "musculus dilatator pupillae" EXACT [FMA:49158, FMA:TA]
synonym: "musculus dilator pupillae" RELATED [BTO:0001371]
xref: BTO:0001371
xref: FMA:49158
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png
xref: MA:0001288
xref: ncithesaurus:Dilator_Pupillae_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle

[Term]
id: UBERON:0001630
name: muscle organ
namespace: uberon
alt_id: UBERON:FMA_5022-MIAA_0000302-XAO_0000174
def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "muscle" EXACT [ZFA:0005145]
synonym: "skeletal muscle system" RELATED [BTO:0001103]
synonym: "somatic muscle" RELATED [BTO:0001103]
xref: AAO:0011066
xref: BTO:0001103
xref: EMAPA:18187
xref: EMAPA:18923
xref: EV:0100146
xref: FMA:5022
xref: GAID:131
xref: galen:Muscle
xref: MA:0000015
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: SCTID:71616004
xref: TAO:0005145
xref: VHOG:0001245
xref: XAO:0000172
xref: ZFA:0005145
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005090 ! muscle structure
intersection_of: UBERON:0000062 ! organ
intersection_of: has_part UBERON:0002385 ! muscle tissue
relationship: has_part UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0000383 ! musculature of body

[Term]
id: UBERON:0001637
name: artery
namespace: uberon
alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005
def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB]
comment: Editor notes: Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme.
subset: uberon_slim
subset: vertebrate_core
synonym: "arterial subtree" EXACT []
synonym: "arterial system" RELATED []
synonym: "arterial tree organ part" EXACT []
synonym: "arterial vessel" RELATED []
xref: AAO:0010211
xref: AEO:0000208
xref: BTO:0000573
xref: EFO:0000814
xref: EHDAA2:0000143
xref: EHDAA2:0003253
xref: EV:0100026
xref: FMA:50720
xref: GAID:468
xref: galen:Artery
xref: MA:0000064
xref: MAT:0000034
xref: MESH:A.07.231.114
xref: MIAA:0000034
xref: ncithesaurus:Artery
xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA
xref: SCTID:362877004
xref: TAO:0000005
xref: VHOG:0001251
xref: XAO:0000114
xref: ZFA:0000005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0003509 ! arterial blood vessel
relationship: part_of UBERON:0004572 ! arterial system

[Term]
id: UBERON:0001638
name: vein
namespace: uberon
alt_id: UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082
def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein]
comment: TODO - check with MA - vein vs venous blood vessel
subset: uberon_slim
subset: vertebrate_core
synonym: "venous subtree" BROAD []
synonym: "venous tree organ part" EXACT []
synonym: "venous vessel" BROAD []
xref: AAO:0010212
xref: AEO:0000209
xref: BTO:0000234
xref: EFO:0000816
xref: EHDAA2:0003254
xref: EV:0100031
xref: FMA:50723
xref: GAID:492
xref: galen:Vein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png
xref: MA:0000067
xref: MAT:0000037
xref: MESH:A.07.231.908
xref: MIAA:0000037
xref: ncithesaurus:Vein
xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA
xref: SCTID:181367001
xref: TAO:0000082
xref: VHOG:0001252
xref: XAO:0000115
xref: ZFA:0000082
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003920 ! venous blood vessel

[Term]
id: UBERON:0001645
name: trigeminal nerve
namespace: uberon
alt_id: UBERON:FMA_50866-MA_0001100-XAO_0003092-ZFA_0000697
def: "Cranial nerve that branches into the ophthalmic (supplying the skin of the nose and upper jaw) and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve]
subset: uberon_slim
subset: vertebrate_core
synonym: "CN-V" RELATED []
synonym: "cranial nerve V" RELATED []
synonym: "fifth cranial nerve" EXACT []
synonym: "nervus trigeminus" RELATED [BTO:0001072]
synonym: "nervus trigeminus [v]" EXACT [FMA:50866, FMA:TA]
synonym: "Trigeminal nerve [V]" EXACT []
synonym: "trigeminal nerve tree" EXACT []
synonym: "trigeminal V" EXACT [EHDAA2:0002084]
synonym: "trigeminal v nerve" EXACT []
synonym: "trigeminus" RELATED [BTO:0001072]
xref: AAO:0010470
xref: BM:VN
xref: BTO:0001072
xref: EFO:0001402
xref: EHDAA2:0002084
xref: EHDAA:3738
xref: EMAPA:16797
xref: EMAPA:17576
xref: FMA:50866
xref: GAID:726
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Gray778_Trigeminal.png/200px-Gray778_Trigeminal.png
xref: MA:0001100
xref: MESH:A.08.800.800.120.760
xref: ncithesaurus:Trigeminal_Nerve
xref: NIF_GrossAnatomy:birnlex_869
xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA
xref: SCTID:362459002
xref: TAO:0000697
xref: VHOG:0000704
xref: XAO:0003092
xref: ZFA:0000697
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001785 ! cranial nerve
relationship: has_developmental_contribution_from UBERON:0002342 {source="Wikipedia"} ! neural crest
relationship: has_developmental_contribution_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon

[Term]
id: UBERON:0001665
name: triceps surae
namespace: uberon
alt_id: UBERON:FMA_51062-MA_0002400
def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5–S2. [WP,unvetted]." [Wikipedia:Triceps_surae]
comment: A set of muscles in FMA, a single organ in MA
subset: uberon_slim
synonym: "calf muscle" RELATED [Wikipedia:Triceps_surae_muscle]
synonym: "gastrosoleus" RELATED [Wikipedia:Triceps_surae_muscle]
synonym: "gastrosoleus complex" RELATED [Wikipedia:Triceps_surae_muscle]
synonym: "sural triceps" RELATED []
xref: FMA:51062
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002400
xref: ncithesaurus:Triceps_Surae
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 {source="MA"} ! muscle organ
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0001666
name: flexor digitorum longus
namespace: uberon
alt_id: UBERON:FMA_51071-MA_0002299
def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [Wikipedia:Flexor_digitorum_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000466
xref: FMA:51071
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002299
xref: ncithesaurus:Flexor_Digitorum_Longus
xref: SCTID:181703002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 ! muscle of leg

[Term]
id: UBERON:0001667
name: tibialis posterior
namespace: uberon
alt_id: UBERON:FMA_51099-MA_0002394
def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [Wikipedia:Tibialis_posterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ibialis posticus" RELATED [BTO:0000867]
synonym: "posterior tibialis" RELATED [BTO:0000867]
synonym: "tibialis caudalis" EXACT []
synonym: "tibialis posterior muscle" RELATED [BTO:0000867]
xref: BTO:0000867
xref: FMA:51099
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002394
xref: ncithesaurus:Tibialis_Caudalis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008230 ! tibialis

[Term]
id: UBERON:0001676
name: occipital bone
namespace: uberon
alt_id: UBERON:FMA_52735-MA_0001468
def: "A saucer-shaped membrane bone situated at the back and lower part of the cranium, is trapezoid in shape and curved on itself. It is pierced by a large oval aperture, the foramen magnum, through which the cranial cavity communicates with the vertebral canal." [Wikipedia:Occipital_bone]
comment: Development notes: formed from the sclerotome of the occipital somites[PMID:11523816]. It is not present in living or fossil agnathans or cartilaginous fishes, but appears to have arisen in parallel in many bony fishes. Incorporation of the occipital ver- tebrae into the skull was associated with the an- nexation of the upper part of the spinal cord into the brain, together with the first 2 spinal nerves as cranial nerves XI and XII[PMID:11523816]
subset: uberon_slim
xref: EMAPA:25112
xref: FMA:52735
xref: GAID:227
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray194.png/200px-Gray194.png
xref: MA:0001468
xref: MESH:A.02.835.232.781.572
xref: ncithesaurus:Occipital_Bone
xref: OpenCyc:Mx4rwQtsiZwpEbGdrcN5Y29ycA
xref: SCTID:181796003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: develops_from UBERON:0003089 {source="PMID:11523816"} ! sclerotome
relationship: part_of UBERON:0001703 {source="FMA"} ! neurocranium
relationship: part_of UBERON:0002241 {source="MA"} ! chondrocranium
relationship: part_of UBERON:0005902 {source="FMA"} ! occipital region

[Term]
id: UBERON:0001677
name: sphenoid bone
namespace: uberon
alt_id: UBERON:FMA_52736-MA_0001472
def: "an unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [Wikipedia:Sphenoid_bone]
comment: part of viscerocranium in FMA, part of chondrocranium in MA
subset: uberon_slim
synonym: "butterfly bone" RELATED [Wikipedia:Sphenoid_bone]
synonym: "os sphenoidale" EXACT [FMA:52736, FMA:TA]
synonym: "os sphenoidale" RELATED [Wikipedia:Sphenoid_bone]
synonym: "os sphenoidum" RELATED [Wikipedia:Sphenoid_bone]
synonym: "sphenoid" EXACT []
synonym: "sphenoidal bone" EXACT []
xref: EMAPA:18340
xref: FMA:52736
xref: GAID:230
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg
xref: MA:0001472
xref: MESH:A.02.835.232.781.802
xref: ncithesaurus:Sphenoid_Bone
xref: OpenCyc:Mx4rwAU9XpwpEbGdrcN5Y29ycA
xref: SCTID:272676008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
relationship: develops_from UBERON:0009193 {source="cjm"} ! sphenoid bone cartilage condensation
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0001678
name: temporal bone
namespace: uberon
alt_id: UBERON:FMA_52737-MA_0001476
def: "The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum." [Wikipedia:Temporal_bone]
comment: The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part. Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA.
subset: uberon_slim
xref: EHDAA:6035
xref: EMAPA:17682
xref: EMAPA:18020
xref: FMA:52737
xref: GAID:232
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg
xref: MA:0001476
xref: MESH:A.02.835.232.781.885
xref: ncithesaurus:Temporal_Bone
xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA
xref: SCTID:181795004
xref: VHOG:0000800
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0001679
name: ethmoid
namespace: uberon
alt_id: UBERON:FMA_52740-MA_0001483-ZFA_0000323
def: "a bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]" [Wikipedia:Ethmoid]
comment: AO notes: Note the WP states the Neurocranium contains the ethmoid bone, both MA and FMA place the ethmoid as part of the viscerocranium. FMA also has it in neurocranium (via basicranium). Ideally we would have non-overlapping divisions of the skull, but for now we follow FMA. Taxon notes: todo - homology e.g. mesethmoid of teleost
subset: uberon_slim
synonym: "ethmoid bone" EXACT []
synonym: "ethmoidal bone" EXACT [MP:0000101]
synonym: "os ethmoidale" EXACT [FMA:52740, FMA:TA]
xref: BTO:0004140
xref: EMAPA:19018
xref: FMA:52740
xref: GAID:212
xref: MA:0001483
xref: MESH:A.02.835.232.781.292
xref: ncithesaurus:Ethmoid_Bone
xref: OpenCyc:Mx4rvuUPh5wpEbGdrcN5Y29ycA
xref: SCTID:272674006
xref: VHOG:0001317
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0004766 ! cranial bone
is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0006227 {evidence="definitional"} ! ethmoid bone primordium
relationship: part_of UBERON:0001704 ! viscerocranium
relationship: part_of UBERON:0002517 ! basicranium

[Term]
id: UBERON:0001680
name: lacrimal bone
namespace: uberon
alt_id: UBERON:FMA_52741-MA_0001486
def: "the smallest and most fragile bone of the face, is situated at the front part of the medial wall of the orbit. It has two surfaces and four borders. In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species." [Wikipedia:Lacrimal_bone]
comment: In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[WP, ISBN 0-03-910284-X]
subset: uberon_slim
subset: vertebrate_core
synonym: "infraorbital 1" RELATED SENSU [VHOG:0001149, ZFA:0000223]
synonym: "lacrimal" BROAD []
synonym: "lacrymal bone" EXACT []
xref: FMA:52741
xref: MA:0001486
xref: ncithesaurus:Lacrimal_Bone
xref: SCTID:272675007
xref: TAO:0000223
xref: VHOG:0001149
xref: ZFA:0000223
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0001681
name: nasal bone
namespace: uberon
alt_id: UBERON:FMA_52745-MA_0001494-ZFA_0000365
def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [Wikipedia:Nasal_bone, ZFIN:curator]
comment: Taxon notes: In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X)
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0000312
xref: EMAPA:19202
xref: FMA:52745
xref: GAID:222
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0001494
xref: MESH:A.02.835.232.781.324.665
xref: ncithesaurus:Nasal_Bone
xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA
xref: SCTID:181801008
xref: TAO:0000365
xref: VHOG:0001370
xref: ZFA:0000365
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0001682
name: palatine bone
namespace: uberon
alt_id: UBERON:FMA_52746-MA_0001495
def: "A bone situated at the back part of the nasal cavity between the maxilla and the pterygoid process of the sphenoid. It contributes to the walls of three cavities: the floor and lateral wall of the nasal cavity, the roof of the mouth, and the floor of the orbit; it enters into the formation of two fossæ, the pterygopalatine and pterygoid fossæ; and one fissure, the inferior orbital fissure. he palatine bone somewhat resembles the letter L, and consists of a Horizontal plate of palatine bone and a Perpendicular plate of palatine bone and three outstanding processes—viz., the Pyramidal process of palatine bone, which is directed backward and lateralward from the junction of the two parts, and the Orbital process of palatine bone and Sphenoidal process of palatine bone, which surmount the vertical part, and are separated by a deep notch, the sphenopalatine notch. The human palatine articulates with six bones: the sphenoid, ethmoid, maxilla, inferior nasal concha, vomer and opposite palatine. In bony fish the palatine bone consists of the perpendicular plate only, lying on the inner edge of the maxilla[WP]." [Wikipedia:Palatine_bone]
subset: uberon_slim
xref: FMA:52746
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Gray996.png/200px-Gray996.png
xref: MA:0001495
xref: ncithesaurus:Palatine_Bone
xref: SCTID:244654005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0001683
name: zygomatic bone
namespace: uberon
alt_id: UBERON:FMA_52747-MA_0001497
def: "The zygomatic bone (cheekbone, malar bone) is a paired bone of the human skull. It articulates with the maxilla, the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae [Fig. 1]. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders. The term zygomatic derives from the Greek zygoma meaning 'yoke'. The zygomatic bone is occasionally referred to as the zygoma, but this term may also refer to the zygomatic arch or the zygomatic process. [WP,unvetted]." [Wikipedia:Zygomatic_bone]
comment: HOG says is homologous to infraorbital 3, which is a dermal bone in dermatocranium. part of viscerocranium, chondrocranium in MA.
subset: uberon_slim
synonym: "cheek bone" EXACT []
synonym: "jugal bone" RELATED [GAID:225, Wikipedia:Zygomatic_bone]
synonym: "jugale" RELATED SENSU []
synonym: "malar bone" EXACT [FMA:52747]
synonym: "orbital bone" EXACT []
synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA]
synonym: "os zygomaticus" RELATED [Wikipedia:Zygomatic_bone]
synonym: "zygoma" RELATED [GAID:225]
xref: EMAPA:25111
xref: FMA:52747
xref: GAID:225
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray164.png/200px-Gray164.png
xref: MA:0001497
xref: SCTID:272683001
xref: VHOG:0001638
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: part_of UBERON:0001567 ! cheek
relationship: part_of UBERON:0001704 ! viscerocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0001684
name: mandible
namespace: uberon
alt_id: UBERON:FMA_52748-MA_0001487
def: "The bone that forms the lower jaw and holds the lower teeth in place[WP]." [Wikipedia:Human_mandible, Wikipedia:Mandible]
comment: 'mandible' also refers to either the upper or lower part of the beak in birds. Note in ZFA mandible/lower jaw are the same class.
subset: uberon_slim
synonym: "inferior maxillary bone" EXACT []
synonym: "lower jaw bone" BROAD SENSU []
synonym: "lower mandibula" NARROW SENSU [Wikipedia:Mandible]
synonym: "mandibula" RELATED [BTO:0001748]
synonym: "mandibulla" EXACT []
xref: BTO:0001748
xref: EFO:0001965
xref: EHDAA2:0001059
xref: EHDAA:8007
xref: EMAPA:18290
xref: FMA:52748
xref: GAID:68
xref: galen:Mandible
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png
xref: MA:0001487
xref: MESH:A.02.835.232.781.324.502.632
xref: ncithesaurus:Mandible
xref: SCTID:181812008
xref: VHOG:0000510
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 {source="EHDAA2"} ! intramembranous bone
is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: develops_from UBERON:0005867 ! mandibular prominence
relationship: has_developmental_contribution_from UBERON:0003324 {source="EHDAA2-modified"} ! mesenchyme of lower jaw
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0001685
name: hyoid bone
namespace: uberon
alt_id: UBERON:FMA_52749-MA_0001484
def: "The hyoid bone (lingual bone) (Latin os hyoideum) is a horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. At rest, it lies at the level of the base of the mandible in the front and the third cervical vertebra behind. It is the only bone in the human skeleton not articulated to any other bone. It is held in place by thyroid ligaments. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. Its name is derived from the Greek word hyoeides meaning 'shaped like the letter upsilon' (υ). [WP,unvetted]." [Wikipedia:Hyoid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hyoid" RELATED [Wikipedia:Hyoid_bone]
synonym: "hyoid bone" RELATED [Wikipedia:Hyoid_bone]
synonym: "hyoideum" RELATED [Wikipedia:Hyoid_bone]
synonym: "lingual bone" RELATED [Wikipedia:Hyoid_bone]
synonym: "os hyoideum" RELATED [Wikipedia:Hyoid_bone]
xref: AAO:0000684
xref: EMAPA:18650
xref: EMAPA:18840
xref: FMA:52749
xref: GAID:197
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png
xref: MA:0001484
xref: MESH:A.02.835.232.409
xref: ncithesaurus:Hyoid_Bone
xref: SCTID:263352000
xref: VHOG:0001325
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0003066 {source="Wikipedia"} ! hyoid arch
relationship: has_developmental_contribution_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3
relationship: part_of UBERON:0001704 ! viscerocranium
relationship: part_of UBERON:0010272 ! hyoid apparatus

[Term]
id: UBERON:0001686
name: auditory ossicle
namespace: uberon
alt_id: UBERON:FMA_52750-MA_0000254-XAO_0000214
def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [Wikipedia:Auditory_ossicle]
comment: Taxon and editor notes: This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5
subset: uberon_slim
synonym: "auditory bone" EXACT []
synonym: "auditory ossicle" RELATED [MA:0000254]
synonym: "ear bone" RELATED [MA:0000254]
synonym: "middle ear bone" RELATED []
synonym: "middle ear ossicle" EXACT [UBERON:cjm]
synonym: "ossicle" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle]
xref: AAO:0011015
xref: EHDAA2:0001183
xref: EHDAA:5697
xref: EMAPA:17824
xref: EV:0100360
xref: FMA:52750
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Illu_auditory_ossicles.jpg/200px-Illu_auditory_ossicles.jpg
xref: MA:0000254
xref: ncithesaurus:Auditory_Ossicle
xref: VHOG:0000461
xref: VHOG:0000688
xref: XAO:0000214
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003099 {source="PMID:11237469", source="UBERONREF:0000002"} ! cranial neural crest
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear

[Term]
id: UBERON:0001687
name: stapes
namespace: uberon
alt_id: UBERON:FMA_52751-MA_0001217
def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [doi:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes]
comment: Editor notes: we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x]
subset: uberon_slim
synonym: "columella" RELATED SENSU [Wikipedia:Stapes]
synonym: "columella auris" RELATED [AAO:0000580]
synonym: "columellare" RELATED [AAO:0000580]
synonym: "interstapediale" RELATED [AAO:0000580]
synonym: "mediostapediale" RELATED [AAO:0000580]
synonym: "mesostapediale" RELATED [AAO:0000580]
synonym: "os columellare" RELATED [AAO:0000580]
synonym: "os intermedium" RELATED [AAO:0000580]
synonym: "stapes" RELATED [AAO:0000580]
synonym: "stelidium" RELATED [AAO:0000580]
synonym: "stilus columellare" RELATED [AAO:0000580]
synonym: "stirrup" EXACT []
xref: EMAPA:18585
xref: FMA:52751
xref: GAID:868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray918.png/200px-Gray918.png
xref: MA:0001217
xref: MESH:A.09.246.397.247.806
xref: ncithesaurus:Stapes
xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA
xref: SCTID:264199009
xref: VHOG:0000688
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001686 ! auditory ossicle
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0004368 {contradicted_by="doi:10.1111/j.1469-7580.2006.00524.x", source="classical definition"} ! Reichert's cartilage
relationship: develops_from UBERON:0010055 {source="definitional"} ! stapes cartilage condensation

[Term]
id: UBERON:0001688
name: incus
namespace: uberon
alt_id: UBERON:FMA_52752-MA_0001215
def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus]
comment: TODO - check develops from and homology
subset: uberon_slim
synonym: "quadrate - incus" BROAD [VHOG:0000689]
xref: EMAPA:18583
xref: FMA:52752
xref: GAID:866
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px-Gray917.png
xref: MA:0001215
xref: MESH:A.09.246.397.247.362
xref: ncithesaurus:Incus
xref: SCTID:272649008
xref: VHOG:0000689
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001686 ! auditory ossicle
is_a: UBERON:0002513 ! endochondral bone
relationship: develops_from UBERON:0004362 {source="Wikipedia"} ! mandibular arch
relationship: develops_from UBERON:0007374 {source="cjm"} ! incus cartilage condensation

[Term]
id: UBERON:0001689
name: malleus
namespace: uberon
alt_id: UBERON:FMA_52753-MA_0001216
def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus]
subset: uberon_slim
xref: EMAPA:18584
xref: FMA:52753
xref: GAID:867
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png
xref: MA:0001216
xref: MESH:A.09.246.397.247.524
xref: ncithesaurus:Malleus
xref: SCTID:264090005
xref: VHOG:0000690
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001686 ! auditory ossicle
is_a: UBERON:0002513 ! endochondral bone
relationship: develops_from UBERON:0003107 {source="Wikipedia"} ! Meckel's cartilage
relationship: develops_from UBERON:0004362 {source="Wikipedia"} ! mandibular arch
relationship: develops_from UBERON:0010054 {source="cjm"} ! malleus cartilage condensation

[Term]
id: UBERON:0001690
name: ear
namespace: uberon
alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "auditory apparatus" RELATED []
synonym: "auris" RELATED [BTO:0000368]
xref: AAO:0011014
xref: BTO:0000368
xref: EFO:0000826
xref: EHDAA2:0000423
xref: EHDAA:502
xref: EMAPA:16193
xref: EV:0100353
xref: FMA:52780
xref: GAID:62
xref: galen:Ear
xref: MA:0000236
xref: MAT:0000138
xref: MESH:A.01.456.313
xref: MIAA:0000138
xref: ncithesaurus:Ear
xref: NIF_GrossAnatomy:birnlex_1062
xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
xref: SCTID:1910005
xref: VHOG:0000330
xref: XAO:0000189
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0002105 ! vestibulo-auditory system

[Term]
id: UBERON:0001691
name: external ear
namespace: uberon
alt_id: UBERON:FMA_52781-MA_0000258-MIAA_0000147-XAO_0000190
def: "Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auricular region" BROAD []
synonym: "auricular region of head" EXACT []
synonym: "auris externa" RELATED [BTO:0002100]
synonym: "outer ear" EXACT []
xref: AAO:0011037
xref: BTO:0002100
xref: EHDAA2:0000462
xref: EHDAA:3786
xref: EHDAA:5343
xref: EHDAA:5352
xref: EMAPA:16991
xref: EV:0100354
xref: FMA:52781
xref: GAID:104
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Gray907.png/200px-Gray907.png
xref: MA:0000258
xref: MAT:0000147
xref: MESH:A.09.246.272
xref: MIAA:0000147
xref: ncithesaurus:External_Ear
xref: NIF_GrossAnatomy:birnlex_1705
xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA
xref: SCTID:181176000
xref: VHOG:0000311
xref: XAO:0000190
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001444 ! subdivision of head
disjoint_from: UBERON:0006618 ! atrium auricular region
relationship: part_of UBERON:0001690 ! ear

[Term]
id: UBERON:0001692
name: basioccipital bone
namespace: uberon
alt_id: UBERON:FMA_52858-MA_0001462-ZFA_0000472
def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials[ZFA]." [Wikipedia:Basilar_part_of_occipital_bone, ZFIN:curator]
comment: TODO - check FMA
subset: uberon_slim
subset: vertebrate_core
synonym: "basilar part of occipital bone" EXACT []
synonym: "basioccipital" EXACT []
synonym: "basioccipital bone" EXACT []
xref: AAO:0000039
xref: EMAPA:18705
xref: FMA:52858
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/Parsbasilaris%28young%29.PNG/200px-Parsbasilaris%28young%29.PNG
xref: MA:0001462
xref: SCTID:138976007
xref: TAO:0000472
xref: VHOG:0001152
xref: ZFA:0000472
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation
relationship: part_of UBERON:0001676 ! occipital bone
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0002517 ! basicranium

[Term]
id: UBERON:0001693
name: exoccipital bone
namespace: uberon
alt_id: UBERON:FMA_52859-MA_0001464-ZFA_0000661
def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [Wikipedia:Lateral_parts_of_occipital_bone, ZFIN:curator]
comment: TODO - check FMA - currently we place this as both of a zone of bone organ and an (endochondral) bone. Removed endochondral bone classification for now, violates disjointness axiom
subset: uberon_slim
subset: vertebrate_core
synonym: "exoccipital" EXACT [FMA:52859]
synonym: "lateral part of occipital bone" EXACT [FMA:52859]
synonym: "pars lateralis" RELATED [Wikipedia:Lateral_parts_of_occipital_bone]
xref: AAO:0000147
xref: EMAPA:18708
xref: FMA:52859
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Gray131.png/200px-Gray131.png
xref: MA:0001464
xref: SCTID:139279001
xref: TAO:0000661
xref: VHOG:0001151
xref: ZFA:0000661
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
relationship: develops_from UBERON:0009635 {source="ZFA"} ! parachordal cartilage
relationship: develops_from UBERON:0010752 ! exoccipital cartilage condensation
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0001694
name: petrous part of temporal bone
namespace: uberon
alt_id: UBERON:FMA_52871-MA_0001477
def: "The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars petrosa (os temporale)" EXACT [FMA:52871]
synonym: "pars petrosa ossis temporalis" EXACT []
synonym: "petromastoid part of temporal bone" EXACT [FMA:52871]
synonym: "petrosal bone" EXACT [FMA:52871]
synonym: "petrous bone" EXACT [FMA:52871]
synonym: "temporal bone petrous part" EXACT []
xref: EHDAA2:0001452
xref: EMAPA:17683
xref: FMA:52871
xref: GAID:234
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png
xref: MA:0001477
xref: MESH:A.02.835.232.781.885.681
xref: ncithesaurus:Ciliary_Process
xref: SCTID:361733004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001678 ! temporal bone

[Term]
id: UBERON:0001695
name: squamous part of temporal bone
namespace: uberon
alt_id: UBERON:FMA_52883-MA_0001473
def: "the thin, platelike part of the temporal bone." [MP:0004423, Wikipedia:Squama_temporalis, Wikipedia:Squamosal_bone]
comment: Taxon notes: The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles. Editor notes: consider separate class for squamosal
synonym: "pars squamosa (os temporale)" EXACT []
synonym: "squama temporalis" EXACT [Wikipedia:Squama_temporalis]
synonym: "squamosal" EXACT [AAO:0000574]
synonym: "squamosal bone" EXACT [MA:0001473]
synonym: "squamous bone" EXACT []
xref: AAO:0000574
xref: EMAPA:18021
xref: FMA:52883
xref: MA:0001473
xref: SCTID:138672006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 {source="EHDAA2-inferred"} ! intramembranous bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0010751 ! squamous part of temporal bone primordium
relationship: part_of UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0004339 {source="EHDAA2"} ! calvarium

[Term]
id: UBERON:0001697
name: orbit
namespace: uberon
alt_id: UBERON:FMA_53074-MA_0002482
def: "the orbital bone is the cavity or socket of the skull in which the eye and its appendages are situated." [Wikipedia:Orbit_(anatomy)]
comment: Editor note: check orbit sensu bone vs orbital region
subset: uberon_slim
subset: vertebrate_core
synonym: "eye socket" EXACT []
synonym: "orbit of skull" EXACT [FMA:53074]
xref: AAO:0000343
xref: BTO:0004687
xref: FMA:53074
xref: GAID:223
xref: galen:Orbit
xref: MA:0002482
xref: MESH:A.02.835.232.781.324.690
xref: ncithesaurus:Orbit
xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA
xref: TAO:0001410
xref: XAO:0003171
xref: ZFA:0001410
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004766 ! cranial bone
relationship: encloses UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0001698
name: foramen ovale of skull
namespace: uberon
alt_id: UBERON:FMA_53155-MA_0001873
def: "one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [Wikipedia:Foramen_ovale_(skull)]
synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155]
synonym: "foramen ovale (skull)" EXACT [FMA:53155]
synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii]
xref: AAO:0000169
xref: EHDAA2:0000551
xref: EHDAA:10627
xref: EMAPA:18711
xref: FMA:53155
xref: galen:ForamenOvaleBasisCranii
xref: ncithesaurus:Oval_Foramen
xref: VHOG:0001189
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit
disjoint_from: UBERON:0004754 ! foramen ovale of heart
relationship: part_of UBERON:0003129 ! skull
relationship: surrounded_by UBERON:0001677 ! sphenoid bone

[Term]
id: UBERON:0001703
name: neurocranium
namespace: uberon
alt_id: UBERON:FMA_53672-ZFA_0001580
def: "The neurocranium, which includes the skull base, sensory capsules and the central part of the skull roof, surrounds and protects the brain[PMID]." [PMID:11523816, Wikipedia:Neuroranium, ZFA:0001580]
comment: Development notes: The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]. Composition notes: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] AO notes: It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ...
subset: uberon_slim
subset: vertebrate_core
synonym: "brain box" EXACT []
synonym: "brain case" RELATED [ZFA:0001580]
synonym: "brain pan" RELATED [http://www.thefreedictionary.com/braincase]
synonym: "braincase" RELATED [ZFA:0001580]
xref: AAO:0010153
xref: EHDAA2:0000243
xref: FMA:53672
xref: MA:0000317
xref: SCTID:361731002
xref: TAO:0001580
xref: XAO:0003170
xref: ZFA:0001580
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0004761 ! cartilaginous neurocranium
relationship: encloses UBERON:0000955 ! brain
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0001704
name: viscerocranium
namespace: uberon
alt_id: UBERON:FMA_53673-MA_0000318
def: "The part of skull that is derived from branchial arches. The facial bones are the bones of the anterior and lower human skull. The splanchnocranium is derived from the neural crest cells (also responsible for the development of the neurocranium or, teeth and adrenal medulla)or from scleratone found in the somite block of the mesoderm. As with the neurocranium, in Chondricthyes and other cartilaginous vertebrates, they are not replaced via endochondral ossification. In tetrapods, such as amphibians and reptiles, the columella connecting to the tympanum is derived from the splanchnocranium. in mammals, the splanchnocranium derives the bones of the inner ear, the malleus, the incus and stapes[WP]. the part of the skull that comprises the facial bones[MP]." [MP:0005274, Wikipedia:Facial_skeleton]
comment: Includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it)[WP] See also notes for ethmoid bone.
subset: vertebrate_core
synonym: "facial bone" RELATED [MA:0000318]
synonym: "facial skeleton" EXACT []
synonym: "pharyngeal arch skeleton" RELATED [ZFA:0001216]
synonym: "pharyngeal skeleton" RELATED [ZFA:0001216]
synonym: "splanchnocranium" EXACT [VHOG:0000315, Wikipedia:Viscerocranium, ZFA:0001216]
xref: AAO:0010157
xref: EHDAA2:0002206
xref: EHDAA:8361
xref: EMAPA:18022
xref: FMA:53673
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0000318
xref: TAO:0001216
xref: VHOG:0000315
xref: XAO:0003176
xref: ZFA:0001216
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002539 {notes="check-me"} ! pharyngeal arch
relationship: has_developmental_contribution_from UBERON:0003099 {source="PMID:11237469", source="Grays"} ! cranial neural crest
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0003129 ! skull

[Term]
id: UBERON:0001706
name: nasal septum
namespace: uberon
alt_id: UBERON:FMA_54375-MA_0000285
def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "columella nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "nasi columella" RELATED [Wikipedia:Nasal_septum]
synonym: "septal cartilage" RELATED [Wikipedia:Nasal_septum]
synonym: "septum mobile nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "septum nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "septum of the nose" RELATED [Wikipedia:Nasal_septum]
xref: AAO:0000559
xref: AAO:0010135
xref: EHDAA2:0001234
xref: EHDAA2:0004104
xref: EHDAA:6809
xref: EMAPA:17608
xref: FMA:54375
xref: GAID:115
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray854.png/200px-Gray854.png
xref: MA:0000285
xref: MESH:A.02.165.639
xref: ncithesaurus:Nasal_Septum
xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA
xref: SCTID:181197004
xref: VHOG:0000017
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0004068 ! medial nasal prominence
relationship: part_of UBERON:0000004 ! olfactory apparatus

[Term]
id: UBERON:0001707
name: nasal cavity
namespace: uberon
alt_id: UBERON:FMA_54378-MA_0000284-ZFA_0000130
def: "a large air filled space above and behind the nose in the middle of the face[WP]." [Wikipedia:Nasal_cavity]
comment: the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures[HP]
subset: uberon_slim
subset: vertebrate_core
synonym: "cavitas nasalis" RELATED [BTO:0002096]
synonym: "cavitas nasi" RELATED [BTO:0002096]
synonym: "cavity of nose" EXACT []
synonym: "nasal canal" EXACT [ZFA:0000130]
synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity]
synonym: "nasal pit" RELATED []
synonym: "olfactory cavity" RELATED []
synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130]
xref: AAO:0000314
xref: BTO:0002096
xref: EHDAA2:0001226
xref: EHDAA:6801
xref: EMAPA:17604
xref: FMA:54378
xref: GAID:350
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0000284
xref: MESH:A.04.531.449
xref: ncithesaurus:Nasal_Cavity
xref: SCTID:263481003
xref: TAO:0000130
xref: VHOG:0000271
xref: ZFA:0000130
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0005870 ! olfactory pit
relationship: part_of UBERON:0000004 {source="MA"} ! olfactory apparatus
relationship: part_of UBERON:0001557 {source="MA"} ! upper respiratory tract

[Term]
id: UBERON:0001708
name: jaw
namespace: uberon
alt_id: UBERON:FMA_54396-MA_0001905-ZFA_0001227
def: "Bony structure of the mouth that holds the teeth. It consists of the MANDIBLE and the MAXILLA[MESH]." [Wikipedia:Jaw]
comment: Editor notes: in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA (and has teeth as parts). It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. TODO - follow EHDAA2 model. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates. Development notes: There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983). Function notes: consider adding a generic grouping class such as 'articulated structure of mouth'
subset: uberon_slim
subset: vertebrate_core
synonym: "jaw cartilage" EXACT [ZFA:0001227]
synonym: "jaws" RELATED []
synonym: "mandibular arch" RELATED []
synonym: "mandibular arch skeleton" EXACT [ZFA:0001227]
synonym: "oral jaw skeleton" RELATED []
synonym: "pharyngeal arch 1 skeleton" RELATED []
synonym: "visceral arch 1" RELATED []
xref: AAO:0000988
xref: BTO:0001749
xref: FMA:54396
xref: GAID:214
xref: galen:Jaw
xref: MA:0001905
xref: MESH:A.02.835.232.781.324.502
xref: ncithesaurus:Jaw
xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA
xref: TAO:0001227
xref: ZFA:0001227
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0001709
name: upper jaw
namespace: uberon
alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272
def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator]
comment: AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal mandibular arch" RELATED []
synonym: "dorsal visceral arch 1" EXACT [ZFA:0001272]
synonym: "palatoquadrate arch" EXACT []
synonym: "upper pharyngeal jaw" EXACT [ZFA:0001272]
synonym: "upper pharyngeal jaws" RELATED []
xref: AAO:0000620
xref: EFO:0003659
xref: EHDAA2:0002118
xref: EHDAA:8025
xref: EMAPA:17924
xref: FMA:54397
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png
xref: MA:0001908
xref: ncithesaurus:Upper_Jaw
xref: TAO:0001272
xref: VHOG:0000454
xref: XAO:0003087
xref: ZFA:0001272
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001708 ! jaw
relationship: part_of UBERON:0004089 ! midface

[Term]
id: UBERON:0001710
name: lower jaw
namespace: uberon
alt_id: UBERON:FMA_54398-MA_0001906-XAO_0003084-ZFA_0001273
def: "." [Wikipedia:Lower_jaw]
comment: AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head
subset: uberon_slim
subset: vertebrate_core
synonym: "mandible" RELATED []
synonym: "mandibular series" RELATED []
synonym: "ventral mandibular arch" EXACT []
xref: AAO:0000272
xref: EFO:0003660
xref: EHDAA2:0001018
xref: EHDAA:7995
xref: EMAPA:17906
xref: FMA:54398
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png
xref: MA:0001906
xref: MESH:A.02.835.232.781.324.502.632
xref: ncithesaurus:Lower_Jaw
xref: TAO:0001273
xref: VHOG:0000453
xref: XAO:0003084
xref: ZFA:0001273
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001708 ! jaw
relationship: develops_from UBERON:0005867 {source="Wikipedia:Mandibular_prominence"} ! mandibular prominence

[Term]
id: UBERON:0001711
name: eyelid
namespace: uberon
alt_id: UBERON:FMA_54437-MA_0000268
def: "An eyelid is a thin fold of skin that covers and protects an eyeball. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]." [Wikipedia:Eyelid]
comment: AO notes: FMA divides this into skin, fascia, conjunctiva. Consider adding 'eye surface', like MA
subset: uberon_slim
synonym: "blepharon" EXACT []
synonym: "palpebra" EXACT []
synonym: "palpebrae" RELATED PLURAL []
xref: BTO:0002241
xref: EHDAA2:0000487
xref: EHDAA:9037
xref: EMAPA:17829
xref: EV:0100338
xref: FMA:54437
xref: GAID:72
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0000268
xref: MESH:A.01.456.505.420.504
xref: ncithesaurus:Eyelid
xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA
xref: SCTID:265782007
xref: VHOG:0000016
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:1000021 ! skin of face
relationship: part_of UBERON:0000019 {source="multiple"} ! camera-type eye

[Term]
id: UBERON:0001712
name: upper eyelid
namespace: uberon
alt_id: UBERON:FMA_54439-MA_0001267
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "palpebra superior" EXACT [FMA:54439, FMA:TA]
synonym: "superior eyelid" EXACT []
xref: EHDAA2:0002115
xref: EHDAA:9047
xref: EMAPA:17834
xref: FMA:54439
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0001267
xref: ncithesaurus:Upper_Eyelid
xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA
xref: SCTID:244499008
xref: VHOG:0000389
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001711 ! eyelid

[Term]
id: UBERON:0001716
name: secondary palate
namespace: uberon
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "Partition that separates the nasal and oral cavities[GO]. The palate is divided into two parts, the anterior bony hard palate, and the posterior fleshy soft palate or velum. The maxillary nerve branch of the trigeminal nerve (V) supplies sensory innervation to the palate[WP]." [GO:0060021, Wikipedia:Palate, Wikipedia:Secondary_palate]
comment: present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber.
subset: uberon_slim
synonym: "definitive palate" EXACT [EMAPA:18948]
synonym: "oral roof" EXACT []
synonym: "palate" BROAD SENSU [EMAPA:18948, GO:0060021, MA:0002476]
synonym: "palatum" BROAD []
synonym: "roof of mouth" EXACT []
xref: BTO:0001779
xref: EMAPA:18948
xref: FMA:54549
xref: GAID:152
xref: galen:Palate
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0002476
xref: MESH:A.14.521.658
xref: ncithesaurus:Palate
xref: SCTID:181227004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0007375 ! primary or secondary palate
relationship: adjacent_to UBERON:0000167 ! oral cavity
relationship: adjacent_to UBERON:0001707 ! nasal cavity
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0001723
name: tongue
namespace: uberon
alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446
def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue]
comment: editor notes - in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence. Taxon notes: Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods. Development notes: The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010360
xref: BTO:0001385
xref: EFO:0000833
xref: EHDAA2:0002062
xref: EHDAA:9144
xref: EMAPA:17185
xref: EMAPA:18870
xref: EV:0100058
xref: FMA:54640
xref: GAID:816
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Tongue.agr.jpg/200px-Tongue.agr.jpg
xref: MA:0000347
xref: MAT:0000040
xref: MESH:A.14.549.885
xref: MIAA:0000040
xref: ncithesaurus:Tongue
xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ
xref: SCTID:181226008
xref: TAO:0005333
xref: VHOG:0000419
xref: XAO:0000446
xref: ZFA:0005333
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000020 {source="GO"} ! sense organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0000166 ! oral opening
relationship: develops_from UBERON:0008814 ! pharyngeal system
relationship: develops_from UBERON:0010056 {evidence="definitional"} ! future tongue
relationship: has_developmental_contribution_from UBERON:0006260 {notes="anterior 2/3"} ! lingual swellings
relationship: has_developmental_contribution_from UBERON:0006756 {source="Wikipedia"} ! median lingual swelling
relationship: has_developmental_contribution_from UBERON:0006757 {source="Wikipedia"} ! lateral lingual swelling
relationship: part_of UBERON:0000165 {source="FMA", source="BTO"} ! mouth
relationship: part_of UBERON:0001033 {source="MA"} ! gustatory system

[Term]
id: UBERON:0001725
name: cranial synchondrosis
namespace: uberon
alt_id: UBERON:FMA_54816-MA_0001502
def: "the cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514]
xref: FMA:54816
xref: MA:0001502
xref: SCTID:314228003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002215 {source="FMA"} ! synchondrosis
is_a: UBERON:0003685 ! cranial suture
intersection_of: UBERON:0002215 ! synchondrosis
intersection_of: part_of UBERON:0003128 ! cranium
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0001728
name: nasopharynx
namespace: uberon
alt_id: UBERON:FMA_54878-MA_0000443
def: "uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate; it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. In front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Nasopharynx]
subset: uberon_slim
synonym: "epipharynx" RELATED [Wikipedia:Pharynx]
synonym: "nasal part of pharynx" EXACT []
synonym: "Nasenrachenraum" RELATED [BTO:0000662]
synonym: "rhinopharynx" EXACT []
xref: BTO:0000662
xref: EHDAA2:0001239
xref: EHDAA:7086
xref: EMAPA:17670
xref: EMAPA:25092
xref: EV:0100066
xref: FMA:54878
xref: GAID:339
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000443
xref: MAT:0000447
xref: MESH:A.03.867.557
xref: ncithesaurus:Nasopharynx
xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA
xref: SCTID:181200003
xref: VHOG:0000375
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001557 ! upper respiratory tract

[Term]
id: UBERON:0001729
name: oropharynx
namespace: uberon
alt_id: UBERON:FMA_54879-MA_0000351
def: "The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]." [Wikipedia:Oropharynx]
subset: uberon_slim
synonym: "mesopharynx" RELATED [Wikipedia:Pharynx]
synonym: "oral part of pharynx" EXACT []
xref: EFO:0001976
xref: EHDAA2:0004082
xref: EMAPA:25094
xref: EV:0100067
xref: FMA:54879
xref: GAID:340
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000351
xref: MAT:0000446
xref: MESH:A.03.867.603
xref: ncithesaurus:Oropharynx
xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA
xref: SCTID:263376008
xref: VAO:0000034
xref: VHOG:0000457
xref: XAO:0004048
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0010023 {source="ISBN10:0073040584-table13.1"} ! dorsal part of pharyngeal pouch 2
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0001733
name: soft palate
namespace: uberon
alt_id: UBERON:FMA_55021-MA_0002412-MIAA_0000039
def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscular palate" RELATED [Wikipedia:Soft_palate]
synonym: "velum" RELATED [Wikipedia:Soft_palate]
xref: EMAPA:18949
xref: FMA:55021
xref: GAID:1284
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: MA:0002412
xref: MAT:0000039
xref: MESH:A.14.549.617.780
xref: MIAA:0000039
xref: ncithesaurus:Soft_Palate
xref: SCTID:245784004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
relationship: part_of UBERON:0000165 {source="FMA"} ! mouth
relationship: part_of UBERON:0001716 {source="MA"} ! secondary palate

[Term]
id: UBERON:0001734
name: uvula
namespace: uberon
alt_id: UBERON:FMA_55022-MA_0001006
def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Palatine_uvula]
subset: uberon_slim
synonym: "palatine uvula" EXACT []
synonym: "uvula of palate" EXACT []
synonym: "uvula palatina" EXACT [FMA:55022, FMA:TA]
xref: EFO:0001386
xref: FMA:55022
xref: GAID:1285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: MESH:A.14.549.617.780.729
xref: ncithesaurus:Uvula
xref: SCTID:362082005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0001737
name: larynx
namespace: uberon
alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081
def: "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000268
xref: BTO:0001208
xref: EFO:0000838
xref: EHDAA2:0004063
xref: EMAPA:18333
xref: EV:0100039
xref: FMA:55097
xref: GAID:108
xref: galen:Larynx
xref: MA:0000414
xref: MAT:0000187
xref: MESH:A.04.329
xref: MIAA:0000187
xref: ncithesaurus:Larynx
xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA
xref: SCTID:181212004
xref: VHOG:0001279
xref: XAO:0003081
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium
relationship: part_of UBERON:0001557 ! upper respiratory tract

[Term]
id: UBERON:0001738
name: thyroid cartilage
namespace: uberon
alt_id: UBERON:FMA_55099-MA_0001764
def: "The thyroid cartilage is the largest of the nine cartilages that make up the laryngeal skeleton, the cartilage structure in and around the trachea that contains the larynx. It is composed of two plate-like laminae that fuse on the anterior side of the cartilage to form a peak, called the laryngeal prominence. This prominence is often referred to as the 'pomus Adamus' or 'Adam's apple'. The laryngeal prominence is more prominent in adult male than female because of the difference in the size of the angle: 90° in male and 120° in female. The lip of the thyroid cartilage just superior to the laryngeal prominence is called the superior thyroid notch, while the notch inferior to the thyroid angle is called the inferior thyroid notch. Its posterior border is elongated both inferiorly and superiorly to form the superior horn of thyroid cartilage and inferior horn of thyroid cartilage. [WP,unvetted]." [Wikipedia:Thyroid_cartilage]
subset: uberon_slim
synonym: "cartilago thyroidea" RELATED [Wikipedia:Thyroid_cartilage]
synonym: "laryngeal prominence" RELATED [Wikipedia:Thyroid_cartilage]
synonym: "pomus" RELATED [Wikipedia:Thyroid_cartilage]
synonym: "pomus adamus" RELATED [Wikipedia:Thyroid_cartilage]
xref: BTO:0003655
xref: EHDAA2:0002030
xref: EHDAA:9395
xref: EMAPA:18698
xref: FMA:55099
xref: GAID:112
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8a/Larynx_external_en.svg/200px-Larynx_external_en.svg.png
xref: MA:0001764
xref: MESH:A.02.165.507.870
xref: ncithesaurus:Thyroid_Cartilage
xref: SCTID:263483000
xref: VHOG:0001365
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001739 ! laryngeal cartilage
relationship: develops_from UBERON:0010219 {source="EHDAA2"} ! thyroid pre-cartilage condensation
relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus

[Term]
id: UBERON:0001739
name: laryngeal cartilage
namespace: uberon
alt_id: UBERON:FMA_55108-MA_0001758
def: "the cartilaginous structures that support the larynx." [MP:0002256]
synonym: "cartilage of larynx" EXACT [FMA:55108]
synonym: "cartilagines laryngeales" EXACT PLURAL []
synonym: "larynx cartilage" EXACT [VHOG:0001550]
xref: BTO:0003660
xref: EHDAA:8157
xref: EMAPA:18697
xref: FMA:55108
xref: GAID:107
xref: MA:0001758
xref: MESH:A.02.165.507
xref: ncithesaurus:Laryngeal_Cartilage
xref: SCTID:263482005
xref: VHOG:0001550
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0007844 {source="FMA"} ! cartilaginous element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
intersection_of: UBERON:0007844 ! cartilaginous element
intersection_of: part_of UBERON:0001737 ! larynx
relationship: develops_from UBERON:0010213 ! laryngeal pre-cartilage condensation
relationship: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0010212 ! laryngeal apparatus

[Term]
id: UBERON:0001740
name: arytenoid cartilage
namespace: uberon
alt_id: UBERON:FMA_55109-MA_0001759
def: "The arytenoid cartilages are a pair of small three-sided pyramids which form part of the larynx, to which the vocal cords are attached. Each is pyramidal in form, and has three surfaces, a base, and an apex. [WP,unvetted]." [Wikipedia:Arytenoid_cartilage]
subset: uberon_slim
synonym: "arytenoid" EXACT [EMAPA:18695]
synonym: "arytenoids" RELATED [Wikipedia:Arytenoid_cartilage]
synonym: "cartilago arytaenoidea" RELATED [AAO:0000674]
xref: AAO:0000674
xref: EMAPA:17977
xref: EMAPA:18695
xref: FMA:55109
xref: GAID:109
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray950.png/200px-Gray950.png
xref: MA:0001759
xref: MESH:A.02.165.507.083
xref: ncithesaurus:Arytenoid_Cartilage
xref: SCTID:264446005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001739 ! laryngeal cartilage
relationship: develops_from UBERON:0010220 {source="cjm"} ! arytenoid pre-cartilage condensation

[Term]
id: UBERON:0001741
name: corniculate cartilage
namespace: uberon
alt_id: UBERON:FMA_55110-MA_0001885
def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilage]
subset: uberon_slim
synonym: "cartilage of Santorini" EXACT []
synonym: "cartilagines corniculata" EXACT [Wikipedia:Corniculate_cartilage]
synonym: "Santorini's cartilage" EXACT []
xref: FMA:55110
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/56/Gray952.png/200px-Gray952.png
xref: MA:0001885
xref: ncithesaurus:Corniculate_Cartilage
xref: SCTID:278989005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001996 {source="MA"} ! elastic cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx

[Term]
id: UBERON:0001742
name: epiglottic cartilage
namespace: uberon
alt_id: UBERON:FMA_55112-MA_0001763
def: "the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259]
comment: AO notes: laryngeal cartilage in MP
subset: uberon_slim
xref: FMA:55112
xref: MA:0001763
xref: ncithesaurus:Epiglottic_Cartilage
xref: SCTID:278990001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001996 ! elastic cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
relationship: part_of UBERON:0000388 ! epiglottis
relationship: part_of UBERON:0001737 ! larynx

[Term]
id: UBERON:0001751
name: dentine
namespace: uberon
alt_id: UBERON:FMA_55628-MA_0002542-ZFA_0005143
def: "a tubular mineralized tissue[H&W]. In mammals - substance of tooth produced by odontoblasts; surrounds the pulp of the tooth and is subjacent to enamel and cement[FMA]. Mineralized collagen containing substance that forms the tooth structure[ZFA]. a calcified tissue of the body, and along with enamel, cementum, and pulp is one of the four major components of teeth[WP]." [Wikipedia:Dentin, ZFIN:curator]
comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. H&W describe a continuum atubular - meta/orthodentine - mesi/semidentine - cement and without cementoblasts. TODO - odontoid tissue. Editors note: note the asserted dual is_a parentage, as dentine is both skeletal tissue and a substance
subset: uberon_slim
subset: vertebrate_core
synonym: "dentin" EXACT [MA:0002542]
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
xref: FMA:55628
xref: GAID:1272
xref: MA:0002542
xref: MESH:A.14.254.900.280
xref: ncithesaurus:Dentin
xref: SCTID:362112004
xref: TAO:0005143
xref: VAO:0000069
xref: XAO:0004051
xref: ZFA:0005143
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001973 ! substance of tooth
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004755 ! skeletal tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest

[Term]
id: UBERON:0001752
name: enamel
namespace: uberon
alt_id: UBERON:FMA_55629-MA_0002543-ZFA_0005142
def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel, ZFIN:curator]
comment: Tooth enamel is also found in the dermal denticles of sharks UBERON:0000041. For the most part, research has shown that formation in animals is almost identical to formation in humans. The enamel organ, including the dental papilla, and ameloblasts function similarly.[53] The variations of enamel that are present are infrequent but sometimes important. Differences exist, certainly, in the morphology, number, and types of teeth among animals. H&W - highly mineralized, hard, prismatic, avascular outer layer of vertebrate teeth and some scales. Enamel is unique in being the only noncollagenous mineralized vertebrate skeletal tissue (Diekwisch, 2002). The enamel proteins amelogenin, enamelin, tuftelin, MMP-20, and EMSP-1 form a highly conserved family of matrix proteins (Satchell et al., 2002). Like dentine, enamel is both odontogenic and skeletogenic; enamel covers teeth and dermal skeletal tissues. Because of its very high mineral content, enamel is much more resistant to wear than dentine; some 96% of mammalian enamel is inorganic, and only 0.5% organic. // TODO - split enamel and enameloid
subset: uberon_slim
subset: vertebrate_core
synonym: "enamel of tooth" EXACT []
synonym: "enameloid" RELATED []
synonym: "tooth enamel" EXACT []
xref: BTO:0001844
xref: FMA:55629
xref: MA:0002543
xref: MESH:A.14.254.900.255
xref: ncithesaurus:Enamel
xref: SCTID:362113009
xref: TAO:0005142
xref: VAO:0000065
xref: XAO:0004198
xref: ZFA:0005142
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001973 ! substance of tooth
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004755 ! skeletal tissue
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0003104 ! mesenchyme

[Term]
id: UBERON:0001753
name: cementum
namespace: uberon
alt_id: UBERON:FMA_55630-MA_0002541
def: "A bone-like mineralized tissue secreted by cementoblasts on the surface of root dentine or, in some animals, crown enamel[Diekwisch 2001]. Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum]
comment: Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W]
synonym: "cement" EXACT []
synonym: "cement of tooth" EXACT []
synonym: "cementum" EXACT []
synonym: "cementum of tooth" EXACT []
xref: BTO:0002525
xref: FMA:55630
xref: MA:0002541
xref: MESH:A.14.254.646.267
xref: ncithesaurus:Cementum
xref: SCTID:362114003
xref: VAO:0000062
xref: XAO:0004196
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001973 ! substance of tooth

[Term]
id: UBERON:0001754
name: dental pulp
namespace: uberon
alt_id: UBERON:FMA_55631-MA_0001599
def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "dental pulp cell" RELATED [BTO:0000339]
synonym: "pulp of tooth" EXACT []
synonym: "tooth pulp" EXACT [ZFA:0005141]
xref: BTO:0000339
xref: FMA:55631
xref: GAID:1270
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0001599
xref: MESH:A.14.254.900.260
xref: ncithesaurus:Dental_Pulp
xref: SCTID:362110007
xref: TAO:0005141
xref: VHOG:0001469
xref: ZFA:0005141
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0001763 ! dental papilla
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0001755
name: stylohyal
namespace: uberon
alt_id: UBERON:FMA_56472-ZFA_0001511
def: "A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]." [http://www.biology-online.org/dictionary/Stylohyal, ZFIN:curator]
comment: TODO - check
subset: vertebrate_core
synonym: "distal part of styloid process" EXACT []
synonym: "interhyal bone" RELATED []
synonym: "interhyal cartilage" EXACT []
xref: FMA:56472
xref: TAO:0001511
xref: ZFA:0001511
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ

[Term]
id: UBERON:0001756
name: middle ear
namespace: uberon
alt_id: UBERON:FMA_56513-MA_0000253-MIAA_0000146-XAO_0000191
def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear]
subset: uberon_slim
synonym: "auris media" RELATED [BTO:0002099]
xref: AAO:0011065
xref: BTO:0002099
xref: EHDAA2:0001181
xref: EHDAA:5693
xref: EMAPA:17000
xref: EV:0100357
xref: FMA:56513
xref: GAID:165
xref: MA:0000253
xref: MAT:0000146
xref: MESH:A.09.246.397
xref: MIAA:0000146
xref: ncithesaurus:Middle_Ear
xref: NIF_GrossAnatomy:birnlex_1695
xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA
xref: SCTID:181185000
xref: VHOG:0000312
xref: XAO:0000191
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001690 ! ear

[Term]
id: UBERON:0001757
name: pinna
namespace: uberon
alt_id: UBERON:FMA_56580-MA_0000259
def: "Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat." [Wikipedia:Pinna_(anatomy)]
subset: uberon_slim
synonym: "auricle" EXACT []
synonym: "auricle of ear" EXACT []
synonym: "auricle of external ear" EXACT []
synonym: "auricula" EXACT [Wikipedia:Auricula]
synonym: "auricula (auris externa)" EXACT []
synonym: "pinna of ear" EXACT []
synonym: "pinnae" RELATED PLURAL []
xref: EHDAA2:0001467
xref: EMAPA:17589
xref: EV:0100355
xref: FMA:56580
xref: galen:Auricle
xref: MA:0000259
xref: ncithesaurus:Auricle
xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA
xref: SCTID:421159007
xref: VHOG:0000460
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0001758
name: periodontium
namespace: uberon
alt_id: UBERON:FMA_56665-MA_0002467
def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
comment: note FMA treats periodontium and periodontal ligament as the same
synonym: "paradentium" RELATED [MESH:A.14.254.646]
synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665]
synonym: "periodontal membrane" RELATED [MA:0002467]
synonym: "tooth supporting structure" RELATED [MESH:A.14.254.646]
xref: BTO:0001021
xref: FMA:56665
xref: GAID:216
xref: MESH:A.14.254.646
xref: ncithesaurus:Periodontium
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0000479 {source="cjm"} ! tissue
relationship: adjacent_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003672 {source="cjm"} ! dentition

[Term]
id: UBERON:0001762
name: nasal concha
namespace: uberon
alt_id: UBERON:FMA_57456-MA_0000286
def: "In anatomy, a nasal concha (or turbinate) is a long, narrow and curled bone shelf (shaped like an elongated sea-shell) which protrudes into the breathing passage of the nose. Turbinate bone refers to any of the scrolled spongy bones of the nasal passages in vertebrates. In humans, the turbinates divide the nasal airway into three groove-like air passages –and are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue. [WP,unvetted]." [Wikipedia:Nasal_concha]
comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here
subset: uberon_slim
synonym: "concha" RELATED [EMAPA:25093]
synonym: "nasal turbinate" EXACT []
synonym: "turbinate" EXACT []
synonym: "turbinate bone" EXACT [EMAPA:25093]
xref: EHDAA2:0004101
xref: EMAPA:25093
xref: GAID:224
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray153.png/200px-Gray153.png
xref: MA:0000286
xref: MESH:A.02.835.232.781.324.948
xref: ncithesaurus:Nasal_Turbinate
xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA
xref: SCTID:361931007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
disjoint_from: UBERON:0006203 ! conchal part of pinna
relationship: part_of UBERON:0001707 ! nasal cavity

[Term]
id: UBERON:0001763
name: dental papilla
namespace: uberon
alt_id: UBERON:FMA_57662-MA_0001598-ZFA_0005140
def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina[ZFA]. The dental papilla is a condensation of ectomesenchymal cells called odontoblasts, seen in histologic sections of a developing tooth. It lies below a cellular aggregation known as the enamel organ. The dental papilla appears after 8-10 weeks intra uteral life. The dental papilla gives rise to the dentin and pulp of a tooth. The enamel organ, dental papilla, and dental follicle together forms one unit, called the tooth germ. This is of importance because all the tissues of a tooth and its supporting structures form from these distinct cellular aggregations." [Wikipedia:Dental_papilla, ZFA:0005140]
comment: todo - add child terms for EMAPA. todo - check if the FMA and MA structures refer to developed structures. todo - check part_of - should perhaps be adjacent_to? Check relationships across taxa.
subset: uberon_slim
subset: vertebrate_core
synonym: "dentinal papilla" RELATED [BTO:0001839]
synonym: "papilla dentis" RELATED [BTO:0001839]
synonym: "pharyngeal tooth mesenchyme" RELATED [ZFA:0005140]
synonym: "tooth mesenchyme" RELATED [ZFA:0005140]
xref: BTO:0001839
xref: FMA:57662
xref: GAID:1277
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray1011.png/200px-Gray1011.png
xref: MA:0001598
xref: MESH:A.14.254.900.720.250
xref: TAO:0005140
xref: VAO:0000025
xref: VHOG:0001465
xref: XAO:0004045
xref: ZFA:0005140
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005087 {source="MESH"} ! tooth placode
relationship: develops_from UBERON:0003856 {source="ZFA"} ! dental mesenchyme
relationship: part_of UBERON:0001091 {source="MA"} ! calcareous tooth
relationship: part_of UBERON:0001828 {source="FMA"} ! gingiva
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ

[Term]
id: UBERON:0001766
name: anterior chamber of eyeball
namespace: uberon
alt_id: UBERON:FMA_58078-MA_0000262
def: "the fluid-filled space inside the eye between the iris and the cornea's innermost surface, the endothelium.[1] Aqueous humor is the fluid that fills the anterior chamber. Hyphema and glaucoma are two main pathologies in this area. In hyphema, blood fills the anterior chamber. In glaucoma, blockage of the canal of Schlemm prevents the normal outflow of aqueous humor, resulting in accumulation of fluid, increased intraocular pressure, and eventually blindness." [Wikipedia:Anterior_chamber_of_eyeball]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709]
synonym: "anterior chamber of eye" EXACT []
synonym: "camera anterior" EXACT []
synonym: "eye anterior chamber" EXACT []
xref: BTO:0002084
xref: EHDAA2:0000129
xref: EHDAA:9033
xref: EMAPA:18231
xref: FMA:58078
xref: GAID:889
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000262
xref: MESH:A.09.371.060.067
xref: ncithesaurus:Anterior_Chamber_of_the_Eye
xref: SCTID:181160009
xref: VHOG:0001431
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006311 ! chamber of eyeball
relationship: part_of UBERON:0001801 ! anterior segment of eyeball

[Term]
id: UBERON:0001768
name: vascular layer of eyeball
namespace: uberon
alt_id: UBERON:FMA_58103-MA_0002480
def: "pigmented middle of the three concentric layers that make up an eye[WP]. The pigmented vascular coat of the eyeball, consisting of the CHOROID; CILIARY BODY; and IRIS, which are continuous with each other. (Cline et al., Dictionary of Visual Science, 4th ed)[GAID]." [Wikipedia:Uvea]
comment: TODO - check child terms, isa vs partof
subset: uberon_slim
synonym: "tunica vasculosa of eyeball" EXACT []
synonym: "uvea" EXACT []
synonym: "uveal tract" EXACT []
xref: FMA:58103
xref: GAID:912
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Gray869.png/200px-Gray869.png
xref: MA:0002480
xref: MESH:A.09.371.894
xref: ncithesaurus:Uvea
xref: SCTID:280648000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001801 ! anterior segment of eyeball

[Term]
id: UBERON:0001769
name: iris
namespace: uberon
alt_id: UBERON:FMA_58235-MA_0000273-XAO_0000185-ZFA_0001238
def: "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)]
comment: AO notes: MA and FMA differ regarding isa vs partof to vascular layer. Taxon notes: The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development - dx.doi.org/10.1006/dbio.1998.9019
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior uvea" RELATED []
xref: AAO:0010347
xref: BTO:0000653
xref: EMAPA:19154
xref: EV:0100345
xref: FMA:58235
xref: GAID:917
xref: MA:0000273
xref: MESH:A.09.371.894.513
xref: ncithesaurus:Iris
xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA
xref: SCTID:181164000
xref: TAO:0001238
xref: VHOG:0000101
xref: XAO:0000185
xref: ZFA:0001238
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001768 {source="FMA"} ! vascular layer of eyeball
relationship: develops_from UBERON:0004128 {source="XAO"} ! optic vesicle
relationship: part_of UBERON:0001801 {source="ZFA"} ! anterior segment of eyeball

[Term]
id: UBERON:0001773
name: sclera
namespace: uberon
alt_id: UBERON:FMA_58269-MA_0000280-XAO_0000183
def: "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted]." [Wikipedia:Sclera]
comment: Development notes: Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]. Taxon notes: Multi-tissue structure that composes the opaque fibrous outer layer of the eye[ZFA] Seko et al demonstrate chondrogenic potential doi:10.1371/journal.pone.0003709 and identify this as connective tissue. Disease notes: implicated in rheumatoid arthritis. Structure notes: continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe. Taxon notes: in fish, reptiles and monotremes the connective tissue of the sclera is skeletal
subset: uberon_slim
subset: vertebrate_core
synonym: "scleral capsule" RELATED []
xref: :sclera
xref: AAO:0010354
xref: BTO:0001606
xref: EMAPA:19027
xref: EV:0100342
xref: FMA:58269
xref: GAID:911
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000280
xref: MESH:A.09.371.784
xref: ncithesaurus:Sclera
xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA
xref: SCTID:181163006
xref: VHOG:0001274
xref: XAO:0000183
xref: ZFA:0005563
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0000926 {source="cjm"} ! mesoderm
relationship: has_developmental_contribution_from UBERON:0002342 {source="Wikipedia"} ! neural crest
relationship: part_of UBERON:0010230 ! eyeball of camera-type eye

[Term]
id: UBERON:0001774
name: muscle of trunk
namespace: uberon
alt_id: UBERON:FMA_58274-MA_0000514
def: "Muscle organ which is a part of the trunk. Examples: external intercostal muscle, external oblique, levator ani." []
comment: TODO - check muscle organ vs musculature
subset: uberon_slim
subset: vertebrate_core
synonym: "body musculature" EXACT [ZFA:0000473]
synonym: "muscle organ of torso" EXACT [OBOL:automatic]
synonym: "muscle organ of trunk" EXACT [OBOL:automatic]
synonym: "torso muscle organ" EXACT [OBOL:automatic]
synonym: "trunk muscle" EXACT []
synonym: "trunk muscle organ" EXACT [OBOL:automatic]
synonym: "trunk musculature" EXACT []
xref: AAO:0000611
xref: EFO:0003531
xref: FMA:58274
xref: MA:0000514
xref: TAO:0000473
xref: XAO:0003230
xref: ZFA:0000473
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0005177 ! trunk organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0001775
name: ciliary body
namespace: uberon
alt_id: UBERON:FMA_58295-MA_0000264-XAO_0000186-ZFA_0001203
def: "circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes." [Wikipedia:Ciliary_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior uvea" RELATED []
synonym: "corpus ciliare" RELATED [Wikipedia:Ciliary_body]
xref: AAO:0010341
xref: BTO:0000260
xref: EMAPA:19065
xref: EV:0100346
xref: FMA:58295
xref: GAID:916
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000264
xref: MESH:A.09.371.894.280
xref: ncithesaurus:Ciliary_Body
xref: SCTID:263340007
xref: TAO:0001203
xref: VHOG:0000102
xref: XAO:0000186
xref: ZFA:0001203
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001768 ! vascular layer of eyeball

[Term]
id: UBERON:0001781
name: layer of retina
namespace: uberon
alt_id: UBERON:FMA_58617-MA_0001319-XAO_0000266
def: "any of the layers that make up the retina[MP]." [MP:0003727]
comment: Note that MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers
subset: vertebrate_core
synonym: "retina layer" EXACT []
synonym: "retina neuronal layer" EXACT [MP:0006069]
synonym: "retinal layer" EXACT []
synonym: "retinal neuronal layer" EXACT [MP:0006069]
xref: AAO:0010353
xref: FMA:58617
xref: MA:0001318
xref: MA:0001319
xref: ncithesaurus:Retina_Layer
xref: SCTID:280657006
xref: XAO:0000266
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0000966 ! retina

[Term]
id: UBERON:0001785
name: cranial nerve
namespace: uberon
alt_id: UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641
def: "Neural tree organ which is continuous with the brain. Examples: Trochlear nerve, facial nerve[FMA]. // Any of the major paired nerves of the head region. // Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [Wikipedia:Cranial_nerve, XB:curator, ZFIN:curator]
comment: Editors note: not classified as a nerve in FMA. Note the structure of EMAPA is rather odd here - EMAPA:17264 (nerve of CNS) has a single child, cranial. We make EMAPA:17264 a subclass of this structure, as this appears to be the intent
subset: uberon_slim
subset: vertebrate_core
synonym: "cranial nerves" RELATED []
synonym: "cranial neural tree organ" EXACT []
xref: AAO:0000108
xref: BTO:0001104
xref: EHDAA2:0000323
xref: EMAPA:17263
xref: EMAPA:17264
xref: FMA:5865
xref: GAID:802
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Brain_human_normal_inferior_view_with_labels_en.svg/200px-Brain_human_normal_inferior_view_with_labels_en.svg.png
xref: MA:0000215
xref: MESH:A.08.800.800.120
xref: ncithesaurus:Cranial_Nerve
xref: NIF_GrossAnatomy:birnlex_1623
xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA
xref: SCTID:244447006
xref: TAO:0000641
xref: VHOG:0000279
xref: XAO:0003089
xref: ZFA:0000641
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
intersection_of: UBERON:0001021 ! nerve
intersection_of: continuous_with UBERON:0000955 ! brain
relationship: continuous_with UBERON:0000955 ! brain
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest

[Term]
id: UBERON:0001801
name: anterior segment of eyeball
namespace: uberon
alt_id: UBERON:FMA_58865-MA_0002484
def: "The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball]
subset: vertebrate_core
synonym: "anterior segment of eye" EXACT []
synonym: "anterior segment of the eye" EXACT []
synonym: "eye anterior segment" EXACT []
synonym: "segmentum anterius (bulbus oculi)" EXACT []
xref: FMA:58865
xref: MA:0002484
xref: MESH:A.09.371.060
xref: ncithesaurus:Anterior_Eye_Segment
xref: SCTID:280658001
xref: ZFA:0005566
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001802
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye

[Term]
id: UBERON:0001802
name: posterior segment of eyeball
namespace: uberon
alt_id: UBERON:FMA_58868-MA_0002485
def: "The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball]
subset: vertebrate_core
synonym: "eye posterior segment" EXACT []
synonym: "posterior segment of eye" EXACT []
synonym: "posterior segment of the eye" EXACT []
synonym: "segmentum posterius (bulbus oculi)" EXACT []
xref: FMA:58868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0002485
xref: ncithesaurus:Posterior_Eye_Segment
xref: SCTID:280659009
xref: ZFA:0005567
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye

[Term]
id: UBERON:0001811
name: conjunctiva
namespace: uberon
alt_id: UBERON:FMA_59011-XAO_0000182
def: "The conjunctiva is a clear mucous membrane consisting of cells and underlying basement membrane that covers the sclera (white part of the eye) and lines the inside of the eyelids. It is made of epithelial tissue. [WP,unvetted]." [Wikipedia:Conjunctiva]
subset: uberon_slim
synonym: "wall of conjunctival sac" EXACT []
xref: AAO:0010343
xref: BTO:0003415
xref: EFO:0000374
xref: EV:0100340
xref: FMA:59011
xref: GAID:898
xref: HAO:0000221
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0000265
xref: MESH:A.09.371.192
xref: ncithesaurus:Conjunctiva
xref: SCTID:181161008
xref: XAO:0000182
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 {source="FMA"} ! anatomical wall
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001711 ! eyelid
relationship: adjacent_to UBERON:0001773 ! sclera
relationship: part_of UBERON:0005908 {source="cjm"} ! conjunctival sac
relationship: part_of UBERON:0010409 {source="MA"} ! eye surface

[Term]
id: UBERON:0001822
name: orbital septum
namespace: uberon
alt_id: UBERON:FMA_59328-MA_0001259
def: "a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
xref: FMA:59328
xref: MA:0001259
xref: SCTID:368859002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000094 ! membrane organ
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002204 ! musculoskeletal system
relationship: part_of UBERON:0004772 ! eyelid tarsus
relationship: surrounds UBERON:0001697 ! orbit

[Term]
id: UBERON:0001823
name: nasal cartilage
namespace: uberon
alt_id: UBERON:FMA_59502-MA_0001883
def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilage of nose" EXACT []
xref: FMA:59502
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray852.png/200px-Gray852.png
xref: MA:0001883
xref: ncithesaurus:Nasal_Cartilage
xref: SCTID:278941001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 {source="MA"} ! cartilage tissue
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000004 ! olfactory apparatus
relationship: encloses UBERON:0000402 ! nasal vestibule
relationship: part_of UBERON:0000004 ! olfactory apparatus

[Term]
id: UBERON:0001828
name: gingiva
namespace: uberon
alt_id: UBERON:FMA_59762-MA_0000342
def: "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
comment: AO notes: FMA has gingiva of upper and lower jaw
subset: uberon_slim
synonym: "gum" EXACT [FMA:59762]
synonym: "gum tissue" EXACT [UBERON:cjm]
xref: BTO:0000519
xref: EFO:0001925
xref: EMAPA:18967
xref: EMAPA:18970
xref: EV:0100064
xref: FMA:59762
xref: GAID:1257
xref: galen:Gingiva
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0000342
xref: MESH:A.14.254.646.480
xref: ncithesaurus:Gingiva
xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA
xref: SCTID:181224006
xref: VHOG:0001269
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0003729 {source="FMA"} ! mouth mucosa

[Term]
id: UBERON:0001833
name: lip
namespace: uberon
alt_id: UBERON:FMA_59816-ZFA_0007006
def: "One of the two fleshy folds which surround the opening of the mouth. http://www.medterms.com/script/main/art.asp?articlekey=9458" [Wikipedia:Lip, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "lips" RELATED []
xref: BTO:0001647
xref: FMA:59816
xref: GAID:76
xref: galen:Lip
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg
xref: MA:0000343
xref: MESH:A.01.456.505.631.515
xref: ncithesaurus:Lip
xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA
xref: SCTID:181221003
xref: TAO:0007006
xref: VHOG:0000677
xref: ZFA:0007006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
relationship: surrounds UBERON:0000166 ! oral opening

[Term]
id: UBERON:0001839
name: bony labyrinth
namespace: uberon
alt_id: UBERON:FMA_60179-MA_0000238-XAO_0000193
def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth]
comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved.
subset: uberon_slim
synonym: "osseous labyrinth" EXACT []
synonym: "osseus labyrinth" RELATED []
xref: AAO:0011078
xref: BTO:0004685
xref: EV:0100362
xref: FMA:60179
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray920.png/200px-Gray920.png
xref: MA:0000238
xref: ncithesaurus:Osseous_Labyrinth
xref: SCTID:279727008
xref: VHOG:0001219
xref: XAO:0000193
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
relationship: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0004681 ! vestibular system

[Term]
id: UBERON:0001840
name: semicircular canal
namespace: uberon
alt_id: UBERON:FMA_60186-MA_0000249-XAO_0000198-ZFA_0000431
def: "One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)" [Wikipedia:Semicircular_canal, ZFIN:curator]
comment: Note that MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal
subset: uberon_slim
subset: vertebrate_core
synonym: "canalis semicircularis" RELATED []
synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA]
xref: AAO:0011098
xref: BTO:0003383
xref: EV:0100365
xref: FMA:60186
xref: GAID:776
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png
xref: MA:0000249
xref: MESH:A.09.246.631.663
xref: ncithesaurus:Semicircular_Canal
xref: SCTID:279757004
xref: TAO:0000431
xref: VHOG:0001144
xref: XAO:0000198
xref: ZFA:0000431
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000025 {source="GO"} ! tube
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003051 ! ear vesicle
relationship: part_of UBERON:0001846 {source="MA"} ! internal ear
relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth

[Term]
id: UBERON:0001844
name: cochlea
namespace: uberon
alt_id: UBERON:FMA_60201-MA_0000240-MIAA_0000144-XAO_0000197
def: "The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]." [Wikipedia:Cochlea]
comment: The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says:  "In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)"
subset: uberon_slim
subset: vertebrate_core
synonym: "cochlear organ" RELATED [BTO:0000267]
synonym: "cochlear part of bony labyrinth" EXACT []
synonym: "lagena" EXACT SENSU [XAO:0000197]
xref: AAO:0000253
xref: BTO:0000267
xref: EFO:0000357
xref: EMAPA:17597
xref: EV:0100363
xref: FMA:60201
xref: GAID:724
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0000240
xref: MAT:0000144
xref: MESH:A.09.246.631.246
xref: MIAA:0000144
xref: ncithesaurus:Cochlea
xref: NIF_GrossAnatomy:birnlex_1190
xref: NIF_GrossAnatomy:birnlex_883
xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA
xref: SCTID:181187008
xref: TAO:0000374
xref: VHOG:0000691
xref: XAO:0000197
xref: ZFA:0000374
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001839 ! bony labyrinth

[Term]
id: UBERON:0001846
name: internal ear
namespace: uberon
alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "auris interna" RELATED [BTO:0000630]
synonym: "inner ear" EXACT []
synonym: "labyrinth" RELATED []
synonym: "otocyst" RELATED []
xref: AAO:0000238
xref: BTO:0000630
xref: EFO:0001363
xref: EHDAA2:0000831
xref: EHDAA:504
xref: EMAPA:16194
xref: EV:0100361
xref: FMA:60909
xref: GAID:871
xref: galen:InnerEar
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0000237
xref: MAT:0000145
xref: MESH:A.09.246.631
xref: MIAA:0000145
xref: ncithesaurus:Internal_Ear
xref: NIF_GrossAnatomy:birnlex_1196
xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
xref: SCTID:181189006
xref: TAO:0000217
xref: VHOG:0000284
xref: XAO:0000192
xref: ZFA:0000217
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003051 {evidence="definitional"} ! ear vesicle
relationship: part_of UBERON:0001690 ! ear

[Term]
id: UBERON:0001848
name: auricular cartilage
namespace: uberon
alt_id: UBERON:FMA_61013-MA_0001227
synonym: "cartilage of pinna" EXACT [FMA:61013]
xref: FMA:61013
xref: MA:0001227
xref: SCTID:279627003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001867 ! cartilage of external ear
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001757 ! pinna
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0001849
name: membranous labyrinth
namespace: uberon
alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
comment: inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
subset: organ_slim
subset: uberon_slim
xref: AAO:0011060
xref: EHDAA:4698
xref: EMAPA:17815
xref: EV:0100367
xref: FMA:61022
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png
xref: MA:0000242
xref: ncithesaurus:Membranous_Labyrinth
xref: SCTID:263790009
xref: VHOG:0000729
xref: XAO:0000194
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0010113 {evidence="definitional"} ! future membranous labyrinth
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0001855
name: cochlear duct of membranous labyrinth
namespace: uberon
alt_id: UBERON:FMA_61119-MA_0000243
def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct]
comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media
subset: uberon_slim
synonym: "cochlea duct" EXACT [NIF_GrossAnatomy:birnlex_2562]
synonym: "cochlear aqueduct" RELATED []
synonym: "cochlear duct" EXACT []
synonym: "ductus cochlearis" RELATED [BTO:0001692]
synonym: "membranous cochlea" RELATED [BTO:0001692]
synonym: "Reissner's canal" EXACT []
synonym: "reissners canal" EXACT [NIF_GrossAnatomy:birnlex_2562]
synonym: "scala media" RELATED [Wikipedia:Cochlear_duct]
synonym: "scala medias" EXACT [NIF_GrossAnatomy:birnlex_2562]
synonym: "scala of Loewenberg" RELATED [BTO:0001692]
xref: BTO:0001692
xref: EHDAA2:0000262
xref: EHDAA:4718
xref: EMAPA:17598
xref: FMA:61119
xref: GAID:874
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png
xref: MA:0000243
xref: MESH:A.09.246.631.246.292
xref: ncithesaurus:Cochlear_Duct
xref: NIF_GrossAnatomy:birnlex_2562
xref: SCTID:279849006
xref: VHOG:0000507
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth
relationship: part_of UBERON:0002499 ! cochlear labyrinth

[Term]
id: UBERON:0001863
name: scala vestibuli
namespace: uberon
alt_id: UBERON:FMA_61269-MA_0001206
def: "Scala vestibuli is a perilymph filled cavity inside the cochlea of the inner ear. It is separated from the scala media by Reissner's membrane and extends from the oval window to the helicotrema where it joins scala tympani. [WP,unvetted]." [Wikipedia:Scala_vestibuli]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61269
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0001206
xref: SCTID:362578000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space

[Term]
id: UBERON:0001864
name: scala tympani
namespace: uberon
alt_id: UBERON:FMA_61272-MA_0001205
def: "Scala tympani is one of the perilymph-filled cavities in the cochlear labyrinth. It is separated from the scala media by the basilar membrane, and it extends from the round window to the helicotrema, where it continues as scala vestibuli. The purpose of the perilymph-filled scala tympani and scala vestibuli is to transduce the movement of air that causes the tympanic membrane and the ossicles to vibrate, to movement of liquid and the basilar membrane. This movement is conveyed to the organ of Corti inside the scala media, composed of hair cells attached to the basilar membrane and their stereocilia embedded in the tectorial membrane. The movement of the basilar membrane compared to the tectorial membrane causes the sterocilia to bend. They then depolarise and send impulses to the brain via the cochlear nerve. This produces the sensation of sound. [WP,unvetted]." [Wikipedia:Scala_tympani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61272
xref: GAID:879
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001205
xref: MESH:A.09.246.631.246.848
xref: SCTID:362579008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space

[Term]
id: UBERON:0001867
name: cartilage of external ear
namespace: uberon
alt_id: UBERON:FMA_61339-MA_0001886
def: "A cartilage that is part of a external ear [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "auricular region cartilage" EXACT [OBOL:automatic]
synonym: "auricular region of head cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of auricular region" EXACT [OBOL:automatic]
synonym: "cartilage of auricular region of head" EXACT [OBOL:automatic]
synonym: "cartilage of outer ear" EXACT [OBOL:automatic]
synonym: "external ear cartilage" EXACT []
synonym: "outer ear cartilage" EXACT [OBOL:automatic]
xref: FMA:61339
xref: GAID:103
xref: MA:0001886
xref: MESH:A.02.165.207
xref: ncithesaurus:External_Ear_Cartilage
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001996 ! elastic cartilage
is_a: UBERON:0003566 ! head connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0001911
name: mammary gland
namespace: uberon
alt_id: UBERON:FMA_62088-MA_0000145-MIAA_0000073-Mammary
def: "The specialized accessory gland of the skin of female mammals that secretes milk. In the human female, it is a compound tubuloalveolar gland composed of 15 to 25 lobes arranged radially about the nipple and separated by connective and adipose tissue, each lobe having its own excretory (lactiferous) duct opening on the nipple. The lobes are subdivided into lobules, with the alveolar ducts and alveoli being the secretory portion of the gland[BTO]. The mouse forms five to six pairs of mammary glands that extend from the neck to the groin." [BTO:0000817, Wikipedia:Mammary_gland]
comment: Note that this class corresponds to the generic mammary gland. The human mammary gland is in the thoracic/breast region and is therefore covered by the subclass "thoracic mammary gland" // Males typically only have rudimentary mammary glands, The male Dayak fruit bat has lactating mammary glands. Male lactation occurs infrequently in some species. We make a part_of association to female organism for now as this is the canonical case
subset: organ_slim
subset: uberon_slim
synonym: "Brustdruese" RELATED [BTO:0000817]
synonym: "dug" RELATED [Wikipedia:Mammary_gland]
synonym: "glandula mammaria" EXACT PLURAL [FMA:57983, FMA:TA]
synonym: "lactiferous gland" EXACT [FMA:62088]
synonym: "lobe of breast" EXACT []
synonym: "lobe of mammary gland" EXACT []
synonym: "mamma" RELATED [BTO:0000817]
xref: BTO:0000817
xref: EFO:0000854
xref: EMAPA:17759
xref: EV:0100125
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_breast_anatomy.jpg/200px-Illu_breast_anatomy.jpg
xref: MA:0000145
xref: MAT:0000073
xref: MESH:A.10.336.482
xref: MIAA:0000073
xref: ncithesaurus:Mammary_Gland
xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA
xref: SCTID:361720005
xref: VHOG:0000398
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002365 {source="MA"} ! exocrine gland
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001913 ! milk
relationship: develops_from UBERON:0005333 ! mammary bud
relationship: part_of UBERON:0003100 {notes="see notes"} ! female organism
relationship: secretes UBERON:0001913 ! milk

[Term]
id: UBERON:0001913
name: milk
namespace: uberon
alt_id: UBERON:FMA_62100-MA_0002552-MIAA_0000056
def: "Secretion produced by the mammary gland.[FMA]" [FMA:FMA, Wikipedia:Breast_milk]
comment: AO notes: ncit:Milk refers specifically to cow milk
subset: uberon_slim
synonym: "mammary gland milk" EXACT []
xref: BTO:0000868
xref: ENVO:02000031
xref: EV:0100126
xref: FMA:62100
xref: GAID:1230
xref: galen:Milk
xref: MA:0002552
xref: MAT:0000056
xref: MESH:A.13.622
xref: MIAA:0000056
xref: ncithesaurus:Breast_Fluid_or_Secretion
xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA
xref: VHOG:0001263
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000456 ! bodily secretion
is_a: UBERON:0006539 ! mammary gland fluid/secretion
relationship: secreted_by UBERON:0001911 ! mammary gland

[Term]
id: UBERON:0001956
name: cartilage of bronchus
namespace: uberon
alt_id: UBERON:FMA_62649-MA_0001835
def: "the hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [MP:0010988]
synonym: "bronchi cartilage" EXACT [OBOL:automatic]
synonym: "bronchial cartilage" EXACT []
synonym: "bronchial cartilage ring" EXACT [MP:0010988]
synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic]
synonym: "bronchus cartilage" EXACT []
synonym: "cartilage of bronchi" EXACT [OBOL:automatic]
synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic]
synonym: "cartilagines bronchiales" EXACT PLURAL []
xref: FMA:62649
xref: MA:0001835
xref: ncithesaurus:Bronchus_Cartilage
xref: SCTID:278980009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001994 {source="MP"} ! hyaline cartilage
is_a: UBERON:0003592 ! bronchus connective tissue
is_a: UBERON:0003603 ! lower respiratory tract cartilage
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus

[Term]
id: UBERON:0001967
name: reticular lamina
namespace: uberon
alt_id: UBERON:FMA_62924-MA_0001194
def: "a thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [http://mw1.merriam-webster.com/medical/reticular%20lamina, Wikipedia:Reticular_lamina]
comment: todo - use GO?
subset: uberon_slim
synonym: "fibroreticular lamina" EXACT []
synonym: "lamina fibroreticularis" EXACT []
synonym: "reticular membrane" RELATED []
xref: FMA:62924
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005764 {source="FMA"} ! acellular membrane
relationship: part_of UBERON:0005769 {source="FMA"} ! basement membrane

[Term]
id: UBERON:0001968
name: semen
namespace: uberon
alt_id: UBERON:FMA_62966-MA_0002522
alt_id: UBERON:FMA_62967-MA_0002523-MIAA_0000057
alt_id: UBERON:FMA_62969-MA_0002526
def: "Body substance which consists of spermatozoa and seminal plasma.[FMA]" [FMA:FMA, Wikipedia:Semen]
comment: Taxon notes: Note that in this ontology, semen is defined as the sum of sperm and seminal fluid, where seminal fluid is defined a taxonomically generic way (see comments for UBERON:0006530).
subset: uberon_slim
xref: BTO:0001230
xref: FMA:62966
xref: GAID:1169
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/40/Human_semen_in_petri_dish2.jpg/180px-Human_semen_in_petri_dish2.jpg
xref: MA:0002522
xref: MESH:A.12.200.732
xref: ncithesaurus:Male_Genital_System_Fluid_or_Secretion
xref: ncithesaurus:Semen
xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000463 ! portion of organism substance
relationship: has_part UBERON:0006530 ! seminal fluid

[Term]
id: UBERON:0001970
name: bile
namespace: uberon
alt_id: UBERON:FMA_62971-MA_0002513
def: "a bitter-tasting, dark green to yellowish brown fluid, produced by the liver of most vertebrates, that aids the process of digestion of lipids in the small intestine. In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum. Bile is a composition of the following materials: water (85%), bile salts (10%), mucus and pigments (3%), fats (1%), inorganic salts (0.7%) and cholesterol (0.3%)[WP]." [Wikipedia:Bile]
subset: uberon_slim
synonym: "fel" RELATED [BTO:0000121]
synonym: "gall" RELATED [BTO:0000121]
xref: BTO:0000121
xref: ENVO:02000023
xref: FMA:62971
xref: GAID:1157
xref: galen:Bile
xref: MA:0002513
xref: MESH:A.12.200.087
xref: ncithesaurus:Bile
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000456 ! bodily secretion
is_a: UBERON:0000463 ! portion of organism substance

[Term]
id: UBERON:0001973
name: substance of tooth
namespace: uberon
alt_id: UBERON:FMA_63001-MA_0002540
def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts.[FMA]" [FMA:63001]
comment: note the asserted dual parentage. This is deliberate, pending better definitions of the distinction between substance and tissue
subset: uberon_slim
synonym: "portion of substance of tooth" EXACT [FMA:63001]
synonym: "tooth substance" EXACT []
xref: FMA:63001
xref: MA:0002540
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0001980
name: arteriole
namespace: uberon
alt_id: UBERON:FMA_63182-MA_0000063
def: "the smallest division of the artery located between the muscular arteries and the capillaries[GO]. Subdivision of arterial tree (organ) which is directly continuous with capillary vessel[FMA]." [FMA:63182, GO:0014830, Wikipedia:Arteriole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010253
xref: BTO:0001997
xref: FMA:63182
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg
xref: MA:0000063
xref: MESH:A.07.231.114.060
xref: ncithesaurus:Arteriole
xref: SCTID:337724002
xref: TAO:0002138
xref: ZFA:0005255
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0003509 ! arterial blood vessel
relationship: part_of UBERON:0001637 ! artery

[Term]
id: UBERON:0001981
name: blood vessel
namespace: uberon
alt_id: UBERON:FMA_63183-XAO_0001011
def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel]
comment: note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids.
subset: uberon_slim
subset: vertebrate_core
synonym: "region of vascular tree organ" EXACT [FMA:50722]
synonym: "vascular tree organ region" EXACT [FMA:50722]
xref: AAO:0011004
xref: AEO:0000207
xref: BTO:0001102
xref: EFO:0000817
xref: EHDAA2:0003252
xref: EHDAA:240
xref: FMA:50722
xref: FMA:63183
xref: GAID:169
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: MA:0000060
xref: MAT:0000393
xref: MESH:A.07.231
xref: ncithesaurus:Blood_Vessel
xref: NIF_GrossAnatomy:nlx_anat_090901
xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA
xref: SCTID:361097006
xref: TAO:0002137
xref: VHOG:0001250
xref: XAO:0001011
xref: ZFA:0005314
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000055 ! vessel
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007500 {source="EHDAA2"} ! epithelial tube open at both ends
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
relationship: develops_from UBERON:0006965 {source="GO:0072360"} ! vascular cord
relationship: has_part UBERON:0000178 ! blood
relationship: part_of UBERON:0004537 ! blood vasculature

[Term]
id: UBERON:0001986
name: endothelium
namespace: uberon
alt_id: UBERON:FMA_63916-ZFA_0001639
def: "A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA]" [FMA:63916, MESH:A.10.272.491]
comment: The term ‘‘endothelium’’ has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980)
subset: uberon_slim
xref: BTO:0000393
xref: EFO:0002548
xref: EMAPA:18578
xref: EMAPA:19063
xref: FMA:63916
xref: GAID:520
xref: galen:Endothelium
xref: MESH:A.10.272.491
xref: ncithesaurus:Endothelium
xref: ncithesaurus:Vascular_Endothelium
xref: SCTID:27168002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000487 ! simple squamous epithelium

[Term]
id: UBERON:0001994
name: hyaline cartilage
namespace: uberon
alt_id: UBERON:FMA_64783-MA_0000109
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium." [Wikipedia:Hyaline_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hyaline cartilage tissue" EXACT []
xref: FMA:64783
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray292.png/200px-Gray292.png
xref: MA:0000109
xref: ncithesaurus:Hyaline_Cartilage
xref: SCTID:39298000
xref: VAO:0000094
xref: XAO:0004029
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue

[Term]
id: UBERON:0001995
name: fibrocartilage
namespace: uberon
alt_id: UBERON:FMA_64784-MA_0000108
def: "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns[VAO]. A mixture of white fibrous tissue and cartilaginous tissue in various proportions. It owes its flexibility and toughness to the former of these constituents, and its elasticity to the latter. It is the only type of cartilage that contains type I collagen in addition to the normal type II[WP]. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium[FMA]." [FMA:64784, VAO:0000103, Wikipedia:Fibrocartilage]
comment: The white fibrocartilages admit of arrangement into four groups—interarticular, connecting, circumferential, and stratiform -- WP. TODO: add mineralized
subset: uberon_slim
xref: FMA:64784
xref: galen:Fibrocartilage
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray295.png/200px-Gray295.png
xref: MA:0000108
xref: ncithesaurus:Fibrocartilage
xref: SCTID:91685003
xref: VAO:0000103
xref: XAO:0004028
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue

[Term]
id: UBERON:0001996
name: elastic cartilage
namespace: uberon
alt_id: UBERON:FMA_64785-MA_0000107
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers." [FMA:64785, Wikipedia:Elastic_cartilage]
subset: uberon_slim
synonym: "elastic cartilage tissue" EXACT [VAO:0000091]
synonym: "yellow elastic cartilage" EXACT [Wikipedia:Elastic_cartilage]
xref: FMA:64785
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray904.png/200px-Gray904.png
xref: MA:0000107
xref: ncithesaurus:Elastic_Cartilage
xref: VAO:0000091
xref: XAO:0004197
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 {source="FMA"} ! cartilage tissue
relationship: develops_from UBERON:0005863 {source="VAO"} ! cartilaginous condensation

[Term]
id: UBERON:0001998
name: sternocostal joint
namespace: uberon
alt_id: UBERON:FMA_64877-MA_0001512
def: "arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation." [Wikipedia:Sternocostal_joints]
comment: This class was created automatically from a combination of ontologies
synonym: "articulatio sternocostalis" EXACT [FMA:7954]
synonym: "sternochondral joint" EXACT []
synonym: "sternocostal synovial joint" EXACT [FMA:7954]
synonym: "synovial sternocostal joint" EXACT [FMA:7954]
xref: FMA:7954
xref: GAID:271
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png
xref: MA:0001512
xref: MESH:A.02.835.583.790
xref: ncithesaurus:Sternocostal_Joint
xref: SCTID:361860002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002001 ! joint of rib
is_a: UBERON:0002217 ! synovial joint
relationship: part_of UBERON:0002228 ! rib

[Term]
id: UBERON:0002000
name: gluteal muscle
namespace: uberon
alt_id: UBERON:FMA_64922-MA_0000535
def: "." [Wikipedia:Gluteal_muscle]
subset: uberon_slim
synonym: "gluteus" RELATED [BTO:0000531]
synonym: "gluteus muscle" RELATED []
xref: BTO:0000531
xref: EHDAA2:0000715
xref: FMA:64922
xref: MA:0000535
xref: ncithesaurus:Gluteal_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group

[Term]
id: UBERON:0002001
name: joint of rib
namespace: uberon
alt_id: UBERON:FMA_64994-MA_0001508
comment: This class was created automatically from a combination of ontologies
synonym: "rib joint" EXACT []
xref: FMA:64994
xref: MA:0001508
xref: ncithesaurus:Joint_of_the_Rib
xref: SCTID:263314001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002228 ! rib
relationship: part_of UBERON:0002228 ! rib

[Term]
id: UBERON:0002002
name: interchondral joint
namespace: uberon
alt_id: UBERON:FMA_64996-MA_0001511
def: "contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets." [Wikipedia:Interchondral_joints]
comment: This class was created automatically from a combination of ontologies
synonym: "articulatio interchondralis" EXACT [FMA:7955]
synonym: "articulationes interchondrales" EXACT [FMA:71378, FMA:TA]
synonym: "interchondral joints" EXACT [FMA:71378]
synonym: "interchondral joints set" EXACT [FMA:71378]
synonym: "synovial interchondral joint" EXACT [FMA:7955]
xref: FMA:64996
xref: FMA:71378
xref: FMA:7955
xref: MA:0001511
xref: SCTID:303101003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002001 ! joint of rib
is_a: UBERON:0002217 ! synovial joint
relationship: part_of UBERON:0002228 ! rib

[Term]
id: UBERON:0002016
name: pulmonary vein
namespace: uberon
alt_id: UBERON:FMA_66643-MA_0002206-XAO_0000394
def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [Wikipedia:Pulmonary_vein]
subset: uberon_slim
synonym: "pulmonary venous tree organ part" EXACT []
xref: AAO:0010521
xref: BTO:0001799
xref: EHDAA2:0001579
xref: EHDAA:2629
xref: EMAPA:18645
xref: FMA:66643
xref: GAID:543
xref: galen:PulmonaryVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002206
xref: MESH:A.07.231.908.713
xref: ncithesaurus:Pulmonary_Vein
xref: VHOG:0001133
xref: XAO:0000394
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0008886 ! pulmonary vascular system
relationship: develops_from UBERON:0002061 ! truncus arteriosus
relationship: part_of UBERON:0008886 ! pulmonary vascular system

[Term]
id: UBERON:0002018
name: synovial membrane
namespace: uberon
alt_id: UBERON:FMA_66762-MA_0000114
def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
subset: uberon_slim
synonym: "membrana synovialis capsulae articularis" RELATED [GAID:264]
synonym: "stratum synoviale" EXACT [FMA:66762, FMA:TA]
synonym: "synovial layer" EXACT [FMA:66762]
synonym: "synovial sheath" RELATED [FMA:General_anatomical_term]
synonym: "synovium" EXACT [BTO:0001823, VHOG:0001282]
xref: AEO:0000181
xref: BTO:0001823
xref: EFO:0001393
xref: EHDAA2:0003181
xref: EV:0100143
xref: FMA:66762
xref: GAID:264
xref: galen:SynovialMembrane
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Synovium.png/200px-Synovium.png
xref: MA:0000114
xref: MESH:A.02.835.583.443.800
xref: ncithesaurus:Synovial_Membrane
xref: SCTID:361828005
xref: VHOG:0001282
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0000486 {source="EHDAA2"} ! multilaminar epithelium
is_a: UBERON:0006915 ! stratified squamous epithelium
relationship: attached_to UBERON:0001484 {source="GAID"} ! articular capsule
relationship: part_of UBERON:0002217 {source="EHDAA2"} ! synovial joint
relationship: part_of UBERON:0007616 ! synovial tissue

[Term]
id: UBERON:0002028
name: hindbrain
namespace: uberon
alt_id: UBERON:FMA_67687-MA_0000195-MIAA_0000107-XAO_0000015-ZFA_0000029
def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Hindbrain, ZFA:0000029, ZFIN:curator]
comment: in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps
subset: uberon_slim
subset: vertebrate_core
synonym: "rhombencephalon" RELATED []
xref: AAO:0010150
xref: ABA:HB
xref: BTO:0000672
xref: EFO:0000923
xref: EHDAA2:0000746
xref: EHDAA:3514
xref: EHDAA:6487
xref: EMAPA:16916
xref: EMAPA:18632
xref: FMA:67687
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000195
xref: MAT:0000107
xref: MESH:A.08.186.211.132.810
xref: MIAA:0000107
xref: ncithesaurus:Hind-Brain
xref: NIF_GrossAnatomy:birnlex_942
xref: TAO:0000029
xref: VHOG:0000070
xref: XAO:0000015
xref: ZFA:0000029
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001891
property_value: "spatially_disjoint_from" UBERON:0001894
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0004732 ! segmental subdivision of nervous system
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003076 {source="XAO"} ! posterior neural tube
relationship: develops_from UBERON:0007277 {evidence="definitional"} ! presumptive hindbrain
relationship: has_developmental_contribution_from UBERON:0003852 {evidence="definitional"} ! rhombencephalon neural crest
relationship: overlaps UBERON:0002298 {source="ABA", notes="modified-source-relation"} ! brainstem
relationship: part_of UBERON:0000955 {source="ZFA"} ! brain

[Term]
id: UBERON:0002033
name: arrector muscle of hair
namespace: uberon
alt_id: UBERON:FMA_67821-MA_0000778
def: "tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans." [Wikipedia:Arrector_pili]
subset: uberon_slim
synonym: "arrector pili" EXACT [FMA:67821, MA:0000778]
synonym: "arrector pili muscle" EXACT [EMAPA:26779, MP:0010679]
synonym: "arrector pili smooth muscle" EXACT [MA:0000778]
synonym: "arrector pilli" EXACT [MP:0010679]
synonym: "arrector pilli muscle" EXACT [MP:0010679]
xref: BTO:0005132
xref: EMAPA:26771
xref: EMAPA:26775
xref: EMAPA:26779
xref: FMA:67821
xref: MA:0000778
xref: SCTID:319910005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: attached_to UBERON:0002073 ! hair follicle

[Term]
id: UBERON:0002036
name: striated muscle tissue
namespace: uberon
alt_id: UBERON:FMA_67905-MA_0002438
def: "Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]." [FMA:67905, Wikipedia:Striated_muscle]
subset: uberon_slim
synonym: "striated muscle" EXACT []
xref: AAO:0010762
xref: AEO:0000140
xref: EHDAA2:0003140
xref: FMA:67905
xref: galen:StriatedMuscle
xref: MA:0002438
xref: ncithesaurus:Striated_Muscle_Tissue
xref: OpenCyc:Mx4rwAoze5wpEbGdrcN5Y29ycA
xref: WBbt:0005779
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002385 ! muscle tissue

[Term]
id: UBERON:0002048
name: lung
namespace: uberon
alt_id: UBERON:FMA_68877-FMA_7195-MA_0000415-MIAA_0000135-XAO_0000119
def: "Respiration organ present in all air-breathing animals whose principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere[WP]. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax[GO]." [BTO:0000763, Wikipedia:Lung]
comment: respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi // Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP]
subset: major_organ
subset: organ_slim
subset: uberon_slim
xref: AAO:0000275
xref: AAO:0010567
xref: BTO:0000763
xref: EFO:0000934
xref: EHDAA2:0001042
xref: EHDAA:1554
xref: EHDAA:2205
xref: EMAPA:16728
xref: EV:0100042
xref: FMA:7195
xref: GAID:345
xref: galen:Lung
xref: MA:0000415
xref: MAT:0000135
xref: MESH:A.04.411
xref: MIAA:0000135
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
xref: SCTID:181216001
xref: VHOG:0000310
xref: XAO:0000119
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000117 {source="GO"} ! respiratory tube
is_a: UBERON:0000171 ! respiration organ
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: develops_from UBERON:0000118 ! lung bud
relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs
relationship: part_of UBERON:0002224 ! thoracic cavity

[Term]
id: UBERON:0002049
name: vasculature
namespace: uberon
alt_id: UBERON:FMA_69050-XAO_0001010-ZFA_0001079
def: "an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249]
comment: see also: vascular system
subset: uberon_slim
subset: vertebrate_core
synonym: "vascular network" EXACT [FMA:69050]
xref: BTO:0003718
xref: FMA:69050
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: TAO:0001079
xref: TAO:0005249
xref: ZFA:0005249
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
relationship: composed_primarily_of UBERON:0000055 ! vessel
relationship: part_of UBERON:0007798 ! vascular system

[Term]
id: UBERON:0002050
name: embryonic structure
namespace: uberon
alt_id: UBERON:FMA_69067-XAO_0003042-ZFA_0001105
def: "Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator]
comment: Note in FMA embryo is_a embryonic structure
subset: inconsistent_with_fma
subset: vertebrate_core
synonym: "developing embryonic structure" EXACT [FBbt:00004208]
synonym: "developing structure" RELATED []
synonym: "embryonale Struktur" RELATED [BTO:0000174]
synonym: "embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169]
xref: AAO:0000138
xref: AEO:0000125
xref: BILA:0000034
xref: BTO:0000174
xref: EFO:0000461
xref: FBbt:00004208
xref: FMA:69067
xref: GAID:407
xref: MESH:A.16
xref: ncithesaurus:Embryonic_Structure
xref: RETIRED_EHDAA2:0003169
xref: SCTID:667009
xref: TAO:0001105
xref: VAO:0000178
xref: XAO:0003042
xref: ZFA:0001105
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005423 ! developing anatomical structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0002061
name: truncus arteriosus
namespace: uberon
alt_id: UBERON:FMA_70301-MA_0000103
def: "The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles." [Wikipedia:Truncus_arteriosus_(embryology)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0004143
xref: FMA:70301
xref: GAID:554
xref: MA:0000103
xref: MESH:A.07.541.278.930
xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw
xref: SCTID:308828009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 {source="EHDAA2"} ! artery
is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
is_a: UBERON:0003498 ! heart blood vessel
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005432 {source="EHDAA2"} ! aortic sac
relationship: part_of UBERON:0004145 {source="MA"} ! outflow tract
relationship: part_of UBERON:0005498 {source="EHDAA2"} ! primitive heart tube

[Term]
id: UBERON:0002062
name: endocardial cushion
namespace: uberon
alt_id: UBERON:FMA_70302-MA_0000078-ZFA_0001317
def: "The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]." [GO:0003197, Wikipedia:Endocardial_cushion, ZFIN:curator]
comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt
subset: uberon_slim
subset: vertebrate_core
synonym: "atrioventricular cushion" EXACT [Wikipedia:Endocardial_cushion]
synonym: "cardiac cushion" EXACT [PMID:15797462]
synonym: "endocardial cushion tissue" EXACT [EHDAA2:0000434]
synonym: "endocardial cushions" RELATED PLURAL []
xref: EHDAA2:0000434
xref: EHDAA2:0004028
xref: EHDAA:2586
xref: EMAPA:16696
xref: FMA:70302
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png
xref: MA:0000078
xref: TAO:0001317
xref: VHOG:0000932
xref: XAO:0004189
xref: ZFA:0001317
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 {source="GO"} ! mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0009751 ! cardiac mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002", source="Wikipedia"} ! neural crest
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000948 {source="ZFA"} ! heart
relationship: part_of UBERON:0002165 {source="ZFA"} ! endocardium

[Term]
id: UBERON:0002063
name: sinus venosus
namespace: uberon
alt_id: UBERON:FMA_70303-ZFA_0000154
def: "The sinus venosus is a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarum." [Wikipedia:Sinus_venosus]
comment: In zebrafish, "the sinus venosus also acts as a pacemaker and is the first to contract"[ZFA:0000154]
subset: uberon_slim
subset: vertebrate_core
synonym: "inflow tract" EXACT [ZFA:0000154]
synonym: "sinus venarum" RELATED [Wikipedia:Sinus_venosus]
synonym: "venarum" RELATED [Wikipedia:Sinus_venosus]
synonym: "venarum sinus" RELATED [Wikipedia:Sinus_venosus]
synonym: "venosus" RELATED [Wikipedia:Sinus_venosus]
xref: AAO:0010505
xref: EHDAA2:0001839
xref: EHDAA:480
xref: EMAPA:16237
xref: FMA:70303
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png
xref: ncithesaurus:Sinus_Venosus
xref: TAO:0000154
xref: VHOG:0000177
xref: ZFA:0000154
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004151 ! cardiac chamber
disjoint_from: UBERON:0006615 ! venous sinus
relationship: develops_from UBERON:0007278 {source="ZFA"} ! presumptive sinus venosus
relationship: part_of UBERON:0002350 {source="OG"} ! conducting system of heart

[Term]
id: UBERON:0002067
name: dermis
namespace: uberon
alt_id: UBERON:FMA_70323-MA_0000152-MIAA_0000153-XAO_0000217-ZFA_0001119
def: "The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]." [Wikipedia:Dermis, ZFIN:curator]
comment: Editor notes: Consider adding a layer-of-skin grouping class for all skin layers
subset: uberon_slim
subset: vertebrate_core
synonym: "corium" RELATED [BTO:0000294]
synonym: "cutis" RELATED [BTO:0000294]
synonym: "vertebrate dermis" EXACT []
xref: AAO:0000128
xref: BTO:0000294
xref: EFO:0000953
xref: EV:0100154
xref: FMA:70323
xref: GAID:1321
xref: MA:0000152
xref: MAT:0000153
xref: MESH:A.17.815.180
xref: MIAA:0000153
xref: ncithesaurus:Dermis
xref: SCTID:361696001
xref: TAO:0001119
xref: VHOG:0000108
xref: XAO:0000217
xref: ZFA:0001119
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004923 {source="FMA"} ! organ component layer
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010317 ! germ layer / neural crest derived structure
relationship: adjacent_to UBERON:0001003 ! epidermis
relationship: adjacent_to UBERON:0002072 ! hypodermis
relationship: develops_from UBERON:0004016 {source="XAO"} ! dermatome
relationship: develops_from UBERON:0010083 {evidence="definitional"} ! future dermis
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0002097 {source="FMA"} ! skin of body
relationship: part_of UBERON:0002199 ! integument

[Term]
id: UBERON:0002072
name: hypodermis
namespace: uberon
alt_id: UBERON:FMA_70544-MIAA_0000418-ZFA_0000117-ZFA_0001136
def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA]." [Wikipedia:Hypodermis, ZFIN:curator]
comment: Note that this class combines superficial fascia and hypodermis in FMA. Note also BTO has 'subcutis'
subset: uberon_slim
subset: vertebrate_core
synonym: "hypoderm" EXACT []
synonym: "subcutaneous tissue" RELATED [Wikipedia:Hypodermis]
synonym: "subcutis" RELATED []
synonym: "superficial fascia" EXACT [FMA:9630]
synonym: "tela subcutanea" EXACT [FMA:9630, FMA:TA]
synonym: "vertebrate hypodermis" EXACT []
xref: BTO:0004525
xref: FMA:70544
xref: FMA:9630
xref: GAID:929
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MESH:A.10.165.887
xref: ncithesaurus:Superficial_Fascia
xref: TAO:0001136
xref: ZFA:0001136
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: adjacent_to UBERON:0002067 ! dermis
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0002199 {source="ZFA"} ! integument

[Term]
id: UBERON:0002073
name: hair follicle
namespace: uberon
alt_id: UBERON:FMA_70660-MA_0000154
def: "a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]." [Wikipedia:Hair_follicle]
comment: TODO - add new class for MA:0002910 vibrissa follicle
subset: organ_slim
subset: uberon_slim
synonym: "vibrissa follicle" RELATED [MP:0010234]
xref: BTO:0000554
xref: EFO:0002464
xref: EMAPA:29741
xref: EV:0100156
xref: FMA:70660
xref: GAID:934
xref: MA:0000154
xref: MESH:A.10.272.497.500
xref: ncithesaurus:Hair_Follicle
xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA
xref: SCTID:280830006
xref: VHOG:0001268
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 {source="Wikipedia"} ! organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005086 ! hair follicle placode
relationship: overlaps UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0001003 ! epidermis

[Term]
id: UBERON:0002075
name: viscus
namespace: uberon
alt_id: UBERON:FMA_7085-XAO_0003034
def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus]
comment: general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs
subset: organ_slim
subset: uberon_slim
synonym: "viscera" RELATED []
synonym: "visceral organ" EXACT [RETIRED_EHDAA2:0002201]
xref: AAO:0010386
xref: BTO:0001491
xref: EHDAA:512
xref: EMAPA:16245
xref: FMA:7085
xref: MA:0000019
xref: MESH:A.01.960
xref: ncithesaurus:Viscera
xref: RETIRED_EHDAA2:0002201
xref: SCTID:118760003
xref: XAO:0003034
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005177 ! trunk organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002100 ! trunk
intersection_of: part_of UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002323 ! body cavity

[Term]
id: UBERON:0002078
name: right atrium
namespace: uberon
alt_id: UBERON:FMA_7096-MA_0000075
def: "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" [FMA:FMA, Wikipedia:Right_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac right atrium" EXACT []
synonym: "heart right atrium" EXACT []
synonym: "right atrium of heart" EXACT []
synonym: "right cardiac atrium" EXACT []
xref: AAO:0010248
xref: BTO:0001703
xref: EHDAA2:0000290
xref: EMAPA:17321
xref: FMA:7096
xref: galen:RightAtrium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000075
xref: ncithesaurus:Right_Atrium
xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
xref: SCTID:244383003
xref: VHOG:0000328
xref: XAO:0003192
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002081 ! cardiac atrium
intersection_of: UBERON:0002081 ! cardiac atrium
intersection_of: in_right_side_of UBERON:0000948 ! heart
relationship: in_right_side_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002079
name: left atrium
namespace: uberon
alt_id: UBERON:FMA_7097-MA_0000074
def: "Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" [FMA:FMA, Wikipedia:Left_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac left atrium" EXACT []
synonym: "heart left atrium" EXACT []
synonym: "left atrium of heart" EXACT []
synonym: "left cardiac atrium" EXACT []
xref: AAO:0010247
xref: BTO:0001702
xref: EHDAA2:0000275
xref: EMAPA:17315
xref: FMA:7097
xref: galen:LeftAtrium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000074
xref: ncithesaurus:Left_Atrium
xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
xref: SCTID:244387002
xref: VHOG:0000369
xref: XAO:0003191
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002081 ! cardiac atrium
intersection_of: UBERON:0002081 ! cardiac atrium
intersection_of: in_left_side_of UBERON:0000948 ! heart
relationship: in_left_side_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002080
name: heart right ventricle
namespace: uberon
alt_id: UBERON:FMA_7098-MA_0000093
def: "Right cardiac chamber which is continuous with the pulmonary arterial trunk.[FMA]" [FMA:FMA, Wikipedia:Right_ventricle]
subset: uberon_slim
synonym: "cardiac right ventricle" EXACT []
synonym: "right ventricle" EXACT [FMA:7098]
synonym: "right ventricle of heart" EXACT []
xref: BTO:0001630
xref: EHDAA2:0000196
xref: EMAPA:17340
xref: FMA:7098
xref: galen:RightVentricle
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000093
xref: ncithesaurus:Right_Ventricle
xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA
xref: SCTID:244384009
xref: VHOG:0000717
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002082 ! cardiac ventricle
intersection_of: UBERON:0002082 ! cardiac ventricle
intersection_of: in_right_side_of UBERON:0000948 ! heart
relationship: develops_from UBERON:0009889 {source="PMID:17276708"} ! secondary heart field
relationship: has_developmental_contribution_from UBERON:0004706 {source="cjm"} ! bulbus cordis
relationship: in_right_side_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002081
name: cardiac atrium
namespace: uberon
alt_id: UBERON:FMA_7099-MA_0000073
def: "Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA]" [FMA:FMA, Wikipedia:Heart_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "atria" EXACT PLURAL []
synonym: "atrial tissue" RELATED [BTO:0000903]
synonym: "atrium" EXACT [ZFA:0000471]
synonym: "atrium of heart" EXACT []
synonym: "Cardiac atria" EXACT PLURAL []
synonym: "cardiac atria" EXACT PLURAL []
synonym: "heart atrium" EXACT []
xref: AAO:0010246
xref: BTO:0000903
xref: EFO:0000277
xref: EFO:0000314
xref: EHDAA2:0000154
xref: EHDAA:1265
xref: EMAPA:16688
xref: EV:0100019
xref: FMA:7099
xref: GAID:555
xref: galen:Atrium
xref: MA:0000073
xref: MAT:0000496
xref: MESH:A.07.541.358
xref: ncithesaurus:Cardiac_Atrium
xref: SCTID:261405004
xref: TAO:0000471
xref: VHOG:0000175
xref: ZFA:0000471
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004151 ! cardiac chamber
relationship: develops_from UBERON:0010227 ! future cardiac atrium

[Term]
id: UBERON:0002082
name: cardiac ventricle
namespace: uberon
alt_id: UBERON:FMA_7100-MA_0000091-ZFA_0000009
def: "Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100]
subset: uberon_slim
subset: vertebrate_core
synonym: "heart ventricle" EXACT []
synonym: "lower chamber of heart" EXACT []
synonym: "ventricle" BROAD []
synonym: "ventricle of heart" EXACT []
xref: AAO:0010249
xref: BTO:0000862
xref: EFO:0000317
xref: EHDAA2:0004164
xref: EHDAA:1912
xref: EMAPA:17331
xref: EV:0100020
xref: FMA:7100
xref: GAID:568
xref: galen:Ventricle
xref: MA:0000091
xref: MAT:0000497
xref: MESH:A.07.541.560
xref: ncithesaurus:Cardiac_Ventricle
xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA
xref: SCTID:277699000
xref: TAO:0000009
xref: VHOG:0000435
xref: XAO:0003193
xref: ZFA:0000009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004151 ! cardiac chamber
relationship: develops_from UBERON:0010226 ! future cardiac ventricle

[Term]
id: UBERON:0002084
name: heart left ventricle
namespace: uberon
alt_id: UBERON:FMA_7101-MA_0000092
def: "Left cardiac chamber which is continuous with the aorta.[FMA]" [FMA:FMA, Wikipedia:Left_ventricle]
subset: uberon_slim
synonym: "cardiac left ventricle" EXACT []
synonym: "left cardiac ventricle" EXACT []
synonym: "left ventricle" EXACT [FMA:7101]
synonym: "left ventricle of heart" EXACT []
xref: BTO:0001629
xref: EHDAA2:0002178
xref: EMAPA:17337
xref: FMA:7101
xref: galen:LeftVentricle
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000092
xref: ncithesaurus:Left_Ventricle
xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA
xref: SCTID:244385005
xref: VHOG:0000718
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002082 ! cardiac ventricle
intersection_of: UBERON:0002082 ! cardiac ventricle
intersection_of: in_left_side_of UBERON:0000948 ! heart
relationship: continuous_with UBERON:0000947 ! aorta
relationship: in_left_side_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002085
name: interatrial septum
namespace: uberon
alt_id: UBERON:FMA_7108-MA_0000084
def: "Cardiac septum which separates the right atrium from the left atrium.[FMA]" [FMA:FMA, Wikipedia:Interatrial_septum]
subset: uberon_slim
synonym: "atrial septum" EXACT []
synonym: "interatrial septal wall" EXACT []
xref: EHDAA2:0000838
xref: EHDAA:1896
xref: EMAPA:17011
xref: FMA:7108
xref: galen:InteratrialSeptum
xref: MA:0000084
xref: ncithesaurus:Interatrial_Septum
xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ
xref: OpenCyc:Mx4rwGvku5wpEbGdrcN5Y29ycA
xref: SCTID:362016003
xref: VHOG:0000385
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002099 ! cardiac septum
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002078 ! right atrium
intersection_of: adjacent_to UBERON:0002079 ! left atrium
relationship: adjacent_to UBERON:0002078 ! right atrium
relationship: adjacent_to UBERON:0002079 ! left atrium

[Term]
id: UBERON:0002086
name: sinoatrial valve
namespace: uberon
alt_id: UBERON:FMA_71120-ZFA_0000680
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
xref: FMA:71120
xref: TAO:0000680
xref: ZFA:0000680
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000946 ! cardial valve
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion
relationship: part_of UBERON:0002063 ! sinus venosus
relationship: part_of UBERON:0002081 ! cardiac atrium

[Term]
id: UBERON:0002090
name: postcranial axial skeleton
namespace: uberon
alt_id: UBERON:FMA_71221-MA_0000308-MIAA_0000148-XAO_0003073-ZFA_0000317
def: "The post-cranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]." [https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834, ZFA:0000317]
comment: previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed.
subset: uberon_slim
subset: vertebrate_core
synonym: "axial skeleton" BROAD [MA:0000308]
synonym: "post-cranial axial skeleton" EXACT []
xref: AAO:0000034
xref: EHDAA2:0000161
xref: EHDAA:5049
xref: EMAPA:17214
xref: EMAPA:18043
xref: MA:0002986
xref: MAT:0000148
xref: MIAA:0000148
xref: TAO:0000317
xref: VAO:0000093
xref: VHOG:0000317
xref: XAO:0003073
xref: ZFA:0000317
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: develops_from UBERON:0003089 ! sclerotome
relationship: part_of UBERON:0005944 ! axial skeleton

[Term]
id: UBERON:0002091
name: entire appendicular skeleton
namespace: uberon
alt_id: UBERON:FMA_71222-MA_0000290-MIAA_0000278-ZFA_0000027
def: "Subdivision of skeleton which which consists of all the  skeletal elements in in the pectoral and pelvic appendages[WP,cjm]." [Wikipedia:Appendicular_skeleton]
comment: Note that ontologies differ in whether they treat the term appendicular skeleton as being the entire set of bones in the limbs, or whether the fore and hind limbs/fins are treated as seperate appendicular skeletons. Here we follow FMA, and treat the appendicular skeleton as the sum total of skeletal elements in the organism (this is evidenced by the fact that in FMA, skeleton of left/right upper/lower limb is part_of a appendicular skeleton, and subtypes of 'subdivision of appendicular skeleton'). We have separate classes such as 'skeleton of limb', and 'skeleton of hindlimb' for the 4 parts of the appendicular skeleton. In future the ZFA/TAO classes may be moved. Note also the FMA, confusingly, has a class appendicular skeletal system, which includes the upper and lower skeletal system as subtypes
subset: uberon_slim
subset: vertebrate_core
synonym: "paired fin skeleton" NARROW SENSU []
xref: AAO:0000747
xref: EFO:0000951
xref: FMA:71222
xref: MA:0000290
xref: MAT:0000278
xref: MIAA:0000278
xref: ncithesaurus:Appendicular_Skeleton
xref: SCTID:322050006
xref: TAO:0000027
xref: VAO:0000076
xref: XAO:0003166
xref: ZFA:0000027
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: overlaps UBERON:0000026 ! appendage

[Term]
id: UBERON:0002094
name: interventricular septum
namespace: uberon
alt_id: UBERON:FMA_7133-MA_0000085
def: "Cardiac septum which separates the right ventricle from the left ventricle.[FMA]" [FMA:FMA, Wikipedia:Interventricular_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart interventricular septum" EXACT [MA:0000085]
synonym: "heart ventricular septum" EXACT [MA:0000085]
synonym: "interventricular septum of heart" RELATED [BTO:0002483]
synonym: "interventriculare cordis" RELATED [BTO:0002483]
synonym: "ventricular septum" RELATED [MA:0000085]
xref: BTO:0002483
xref: EFO:0001956
xref: EHDAA2:0000885
xref: EHDAA:2603
xref: EMAPA:17333
xref: FMA:7133
xref: galen:InterventricularSeptum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png
xref: MA:0000085
xref: ncithesaurus:Interventricular_Septum
xref: OpenCyc:Mx4rwA7lp5wpEbGdrcN5Y29ycA
xref: SCTID:362019005
xref: VHOG:0000386
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002099 ! cardiac septum
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002080 ! heart right ventricle
intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle
relationship: adjacent_to UBERON:0002080 ! heart right ventricle
relationship: adjacent_to UBERON:0002084 ! heart left ventricle

[Term]
id: UBERON:0002095
name: mesentery
namespace: uberon
alt_id: UBERON:FMA_7144-XAO_0000138-ZFA_0005129
def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera.  Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon." [FMA:7144, Wikipedia:Mesentery, Wikipedia:Mesentery#Mesentery_.28general.29]
comment: Note that in Uberon, this term is used in the generic sense, not necessarily restricted to the peritoneum, consistent with FMA. WP: "In anatomy, the mesentery is the double layer of peritoneum that suspends the jejunum and ileum from the posterior wall of the abdomen. Its meaning, however, is frequently extended to include double layers of peritoneum connecting various components of the abdominal cavity.". TODO - check. Consider FMA:259286 - Region of mesentery.
subset: uberon_slim
subset: vertebrate_core
synonym: "generic mesentery" EXACT [Wikipedia:Mesentery]
synonym: "mesentery (generic)" EXACT [Wikipedia:Mesentery]
xref: AAO:0011061
xref: BTO:0001380
xref: EV:0100083
xref: FMA:7144
xref: GAID:21
xref: galen:Mesentery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray1038.png/200px-Gray1038.png
xref: MESH:A.01.047.025.600.451
xref: ncithesaurus:Mesentery
xref: SCTID:362707009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000042 ! serous membrane
relationship: develops_from UBERON:0002296 {evidence="definitional"} ! dorsal mesentery

[Term]
id: UBERON:0002097
name: skin of body
namespace: uberon
alt_id: UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023
def: "Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal." [FMA:7163, OMD:skin, Wikipedia:Skin]
comment: Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin
subset: major_organ
subset: uberon_slim
synonym: "entire skin" EXACT []
synonym: "integument" RELATED []
synonym: "pelt" RELATED []
synonym: "skin" RELATED []
xref: BTO:0001253
xref: EFO:0000962
xref: EHDAA2:0001844
xref: EMAPA:17525
xref: FMA:7163
xref: galen:Skin
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MESH:A.17.815
xref: ncithesaurus:Skin
xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
xref: SCTID:181469002
xref: XAO:0000023
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
relationship: has_part UBERON:0000014 ! zone of skin
relationship: has_part UBERON:0001003 ! epidermis
relationship: has_part UBERON:0002067 ! dermis
relationship: part_of UBERON:0002199 ! integument

[Term]
id: UBERON:0002099
name: cardiac septum
namespace: uberon
alt_id: UBERON:FMA_7180-MA_0000083
def: "The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles." [MESH:A.07.541.459]
comment: Note in GO, septum morphogenesis is part of cardiac chamber morphogenesis; need to add axioms to infer this. Taxon notes: "Terrestrial vertebrates have divided hearts in which septae separate the oxygenated and deoxygenated blood within the pulmonary and systemic circulations"
subset: uberon_slim
synonym: "cardiac septa" EXACT PLURAL []
synonym: "heart septa" EXACT PLURAL []
synonym: "heart septum" EXACT []
synonym: "septum of heart" EXACT []
xref: FMA:7180
xref: GAID:562
xref: MA:0000083
xref: MESH:A.07.541.459
xref: ncithesaurus:Heart_Septum
xref: SCTID:362014000
xref: XAO:0004141
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0003037 ! septum
intersection_of: part_of UBERON:0000948 ! heart
relationship: adjacent_to UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002100
name: trunk
namespace: uberon
alt_id: UBERON:FMA_7181-MIAA_0000296-XAO_0003025-ZFA_0001115
def: "Organism subdivision which is the part of the body posterior to the head and anterior to the tail." [TAO:0001115, Wikipedia:Torso]
comment: editor note - check AAO
subset: uberon_slim
subset: vertebrate_core
synonym: "Rumpf" RELATED [BTO:0001493]
synonym: "torso" EXACT []
synonym: "trunk region" RELATED [AAO:0000612]
xref: AAO:0000612
xref: AAO:0010339
xref: BILA:0000116
xref: BTO:0001493
xref: EFO:0000966
xref: FMA:7181
xref: galen:Trunk
xref: MA:0000004
xref: MAT:0000296
xref: MIAA:0000296
xref: ncithesaurus:Trunk
xref: OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA
xref: SCTID:262225004
xref: TAO:0001115
xref: XAO:0003025
xref: ZFA:0001115
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0000026
property_value: "spatially_disjoint_from" UBERON:0000033
is_a: UBERON:0000475 ! organism subdivision
relationship: has_part UBERON:0000915 ! thoracic segment of trunk
relationship: has_part UBERON:0000916 ! abdomen

[Term]
id: UBERON:0002101
name: limb
namespace: uberon
def: "A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003, Wikipedia:Limb]
subset: uberon_slim
synonym: "flipper" NARROW SENSU []
synonym: "free limb" EXACT [FMA:24875]
synonym: "limb sensu vertebrata" EXACT [MAT:0000090]
synonym: "tetrapod limb" EXACT []
xref: AAO:0010336
xref: EFO:0000876
xref: EHDAA2:0003172
xref: EHDAA:1697
xref: EHDAA:8273
xref: EMAPA:16405
xref: FMA:24875
xref: GAID:36
xref: galen:Extremity
xref: MA:0000007
xref: MAT:0000090
xref: MIAA:0000090
xref: ncithesaurus:Limb
xref: OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA
xref: SCTID:243996003
xref: VAO:0000121
xref: VHOG:0000336
xref: XAO:0003027
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004708 ! limb/fin
relationship: develops_from UBERON:0004347 ! limb bud

[Term]
id: UBERON:0002102
name: forelimb
namespace: uberon
alt_id: UBERON:FMA_7183-MA_0000025-MIAA_0000394-XAO_0003030
def: "A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts." [UBERONREF:0000003, Wikipedia:Forelimb]
comment: AO notes: note that this corresponds to FMA:'free upper limb' (a limb segment), NOT 'upper limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Usage notes:  Note distinction between arm and forelimb. hand is part of forelimb, but not part of arm
subset: uberon_slim
synonym: "anteriormost limb" EXACT []
synonym: "fore limb" EXACT []
synonym: "foreleg" RELATED []
synonym: "forelimb" EXACT []
synonym: "free part of upper limb" EXACT [FMA:24878]
synonym: "free upper limb" EXACT [FMA:24878, UBERONREF:0000003]
synonym: "membrum superius" EXACT [FMA:7183, FMA:TA]
synonym: "pectoral limb" EXACT []
synonym: "superior member" EXACT []
synonym: "upper extremity" EXACT []
synonym: "upper limb" EXACT []
xref: AAO:0000205
xref: BTO:0001729
xref: EFO:0000882
xref: EHDAA2:0002133
xref: EHDAA:6208
xref: EMAPA:17412
xref: EV:0100014
xref: FMA:24878
xref: GAID:1215
xref: GAID:51
xref: galen:UpperExtremity
xref: MA:0000025
xref: MAT:0000394
xref: MESH:A.13.395
xref: MIAA:0000394
xref: ncithesaurus:Upper_Extremity
xref: SCTID:182245002
xref: VHOG:0000338
xref: XAO:0003030
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002101 ! limb
is_a: UBERON:0004710 ! pectoral appendage
intersection_of: UBERON:0002101 ! limb
intersection_of: connected_to UBERON:0001421 ! pectoral girdle region
relationship: anterior_to UBERON:0002103 ! hindlimb
relationship: connected_to UBERON:0001421 ! pectoral girdle region
relationship: develops_from UBERON:0005417 ! forelimb bud
relationship: part_of UBERON:0000153 ! anterior region of body

[Term]
id: UBERON:0002103
name: hindlimb
namespace: uberon
alt_id: UBERON:FMA_7184-MA_0000026-MIAA_0000395-XAO_0003031
def: "A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts." [UBERONREF:0000003, Wikipedia:Lower_limb]
comment: AO notes: note that this corresponds to FMA:'free lower limb' (a limb segment), NOT 'lower limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Note that AAO class probably refers to skeleton
subset: uberon_slim
synonym: "free lower limb" EXACT [FMA:24879, UBERONREF:0000003]
synonym: "hind limb" EXACT []
synonym: "hindlimb" EXACT []
synonym: "inferior member" EXACT []
synonym: "lower extremity" RELATED []
synonym: "lower limb" EXACT []
synonym: "membrum inferius" EXACT [FMA:7184, FMA:TA]
synonym: "pelvic appendage" RELATED []
xref: AAO:0000219
xref: BTO:0002345
xref: EFO:0000883
xref: EHDAA2:0001033
xref: EHDAA:6094
xref: EMAPA:17458
xref: EV:0100015
xref: FMA:24879
xref: GAID:1221
xref: GAID:38
xref: galen:LowerExtremity
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray1239.png/200px-Gray1239.png
xref: MA:0000026
xref: MAT:0000395
xref: MESH:A.13.473
xref: MIAA:0000395
xref: ncithesaurus:Hind_Limb
xref: ncithesaurus:Lower_Extremity
xref: SCTID:182281004
xref: VHOG:0000337
xref: XAO:0003031
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002101 ! limb
is_a: UBERON:0004709 ! pelvic appendage
intersection_of: UBERON:0002101 ! limb
intersection_of: connected_to UBERON:0001271 ! pelvic girdle region
relationship: connected_to UBERON:0001271 ! pelvic girdle region
relationship: develops_from UBERON:0005418 ! hindlimb bud
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0002104
name: visual system
namespace: uberon
alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127
def: "." [Wikipedia:Visual_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "visual organ system" EXACT []
xref: AAO:0000632
xref: FMA:7191
xref: MA:0002444
xref: ncithesaurus:Visual_System
xref: NIF_GrossAnatomy:FMAID_7191
xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
xref: SCTID:281831001
xref: TAO:0001127
xref: XAO:0003198
xref: ZFA:0001127
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0002105
is_a: UBERON:0001032 ! sensory system

[Term]
id: UBERON:0002105
name: vestibulo-auditory system
namespace: uberon
alt_id: UBERON:FMA_7192-MA_0002443
def: "A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
comment: Auditory system is general anatomical term in FMA
subset: functional_classification
subset: uberon_slim
subset: vertebrate_core
synonym: "auditory organ system" EXACT []
synonym: "auditory system" RELATED []
synonym: "auditory/vestibular system" RELATED []
synonym: "vestibuloauditory system" EXACT []
synonym: "vestibuloauditory system" RELATED []
xref: AAO:0000631
xref: FMA:7192
xref: FMA:78500
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/HumanEar.jpg/200px-HumanEar.jpg
xref: MA:0002443
xref: ncithesaurus:Auditory_System
xref: NIF_GrossAnatomy:nlx_anat_090817
xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
xref: TAO:0001138
xref: XAO:0003195
xref: ZFA:0001138
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001032 ! sensory system

[Term]
id: UBERON:0002106
name: spleen
namespace: uberon
alt_id: UBERON:FMA_7196-MA_0000141-MIAA_0000085-XAO_0000328-ZFA_0000436
def: "Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system.[1] In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron.[2] It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells." [Wikipedia:Spleen]
comment: Taxon notes: Neither hagfish nor lampreys possess what might be considered a discrete and condensed spleen. Hagfish possess dispersed lymphoid tissue within the submucosa of the intestine (96) associated with the portal vein (97), whereas lymphoid tissue is associated with the typhlosole portion of the intestine in lampreys (96) [PMID:20959416]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010395
xref: BTO:0001281
xref: EFO:0000869
xref: EMAPA:18767
xref: EV:0100055
xref: FMA:7196
xref: GAID:1289
xref: galen:Spleen
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d6/Illu_spleen.jpg/200px-Illu_spleen.jpg
xref: MA:0000141
xref: MAT:0000085
xref: MESH:A.15.382.520.604.713
xref: MIAA:0000085
xref: ncithesaurus:Spleen
xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA
xref: SCTID:181279003
xref: TAO:0000436
xref: VHOG:0000120
xref: XAO:0000328
xref: ZFA:0000436
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
is_a: UBERON:0005172 ! abdomen organ
relationship: develops_from UBERON:0006293 ! spleen primordium
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system

[Term]
id: UBERON:0002107
name: liver
namespace: uberon
alt_id: UBERON:FMA_7197-MA_0000358-MIAA_0000097-XAO_0000133-ZFA_0000123
def: "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." [BTO:0000759, Wikipedia:Liver]
comment: AO notes: Only ZFA considers this part_of immune system - we weaken this to an overlaps relation, as in general it's only a subset of cells that have clear immune function. Taxon notes: WP: The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates.[7] An organ sometimes referred to as a liver is found associated with the digestive tract of the primitive chordate Amphioxus. However, this is an enzyme secreting gland, not a metabolic organ, and it is unclear how truly homologous it is to the vertebrate liver.
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010111
xref: BTO:0000759
xref: EFO:0000887
xref: EHDAA2:0000997
xref: EHDAA:2197
xref: EMAPA:16846
xref: EV:0100089
xref: FMA:7197
xref: GAID:288
xref: galen:Liver
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Leber_Schaf.jpg/200px-Leber_Schaf.jpg
xref: MA:0000358
xref: MAT:0000097
xref: MESH:A.03.620
xref: MIAA:0000097
xref: ncithesaurus:Liver
xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA
xref: SCTID:181268008
xref: TAO:0000123
xref: VHOG:0000257
xref: XAO:0000133
xref: ZFA:0000123
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005172 ! abdomen organ
is_a: UBERON:0006925 ! digestive gland
relationship: develops_from UBERON:0003894 {evidence="definitional"} ! liver primordium
relationship: develops_from UBERON:0004161 {source="EHDAA2"} ! septum transversum
relationship: develops_from UBERON:0008836 {source="http://www.stembook.org/node/512"} ! liver bud
relationship: overlaps UBERON:0002405 {source="ZFA-weakened"} ! immune system
relationship: part_of UBERON:0000916 {source="FMA"} ! abdomen
relationship: part_of UBERON:0000949 {source="EHDAA2"} ! endocrine system
relationship: part_of UBERON:0001007 {source="ZFA"} ! digestive system
relationship: part_of UBERON:0002423 {source="ZFA"} ! hepatobiliary system

[Term]
id: UBERON:0002108
name: small intestine
namespace: uberon
alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a>" [FMA:7200, WA:dh, Wikipedia:Small_intestine, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior intestine" RELATED []
synonym: "intestinum tenue" RELATED [BTO:0000651]
synonym: "mid intestine" RELATED []
synonym: "small bowel" EXACT []
synonym: "small intestine" EXACT []
xref: AAO:0010397
xref: BTO:0000651
xref: EFO:0000841
xref: EV:0100072
xref: FMA:7200
xref: GAID:313
xref: galen:SmallIntestine
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png
xref: MA:0000337
xref: MAT:0000047
xref: MESH:A.03.492.411.620
xref: MIAA:0000047
xref: ncithesaurus:Small_Intestine
xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
xref: SCTID:181250005
xref: TAO:0001323
xref: VHOG:0000055
xref: XAO:0000130
xref: ZFA:0001323
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160 ! intestine

[Term]
id: UBERON:0002110
name: gallbladder
namespace: uberon
alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208
def: "a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder]
comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988)
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gall bladder" EXACT []
xref: AAO:0010114
xref: BTO:0000493
xref: EFO:0000853
xref: EHDAA2:0000699
xref: EHDAA:8062
xref: EMAPA:17202
xref: EV:0100090
xref: FMA:7202
xref: galen:Gallbladder
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Abdomal_organs.svg/200px-Abdomal_organs.svg.png
xref: MA:0000356
xref: MAT:0000072
xref: MESH:A.03.159.439
xref: MIAA:0000072
xref: ncithesaurus:Gallbladder
xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA
xref: SCTID:181269000
xref: TAO:0000208
xref: VHOG:0000221
xref: XAO:0000135
xref: ZFA:0000208
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005172 ! abdomen organ
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: develops_from UBERON:0006242 {evidence="definitional"} ! gall bladder primordium
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001173 ! biliary tree
relationship: part_of UBERON:0002294 ! biliary system
relationship: part_of UBERON:0002323 ! body cavity

[Term]
id: UBERON:0002111
name: artery smooth muscle tissue
namespace: uberon
alt_id: UBERON:FMA_72024-MA_0000708
def: "A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arterial smooth muscle" EXACT [BTO:0000087]
synonym: "artery smooth muscle" EXACT []
synonym: "artery smooth muscle tissue" EXACT []
synonym: "smooth muscle of artery" EXACT [FMA:72024]
xref: BTO:0000087
xref: FMA:72024
xref: MA:0000708
xref: ncithesaurus:Artery_Smooth_Muscle_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 {source="FMA"} ! smooth muscle tissue
is_a: UBERON:0004237 ! blood vessel smooth muscle
is_a: UBERON:0004695 ! arterial system smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery

[Term]
id: UBERON:0002112
name: smooth muscle of esophagus
namespace: uberon
alt_id: UBERON:FMA_72025-MA_0001573
def: "A portion of smooth muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "esophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "esophagus smooth muscle" EXACT []
synonym: "esophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet involuntary muscle" EXACT [OBOL:automatic]
synonym: "gullet non-striated muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of esophagus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gullet" EXACT [OBOL:automatic]
synonym: "involuntary muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of esophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gullet" EXACT [OBOL:automatic]
synonym: "non-striated muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "oesophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "oesophagus smooth muscle" RELATED []
synonym: "oesophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: FMA:72025
xref: MA:0001573
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0003832 ! esophagus muscle

[Term]
id: UBERON:0002113
name: kidney
namespace: uberon
alt_id: UBERON:FMA_7204-MA_0001683
alt_id: UBERON:FMA_7205-MA_0001655
def: "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "kidney" EXACT []
xref: AAO:0000250
xref: BTO:0000671
xref: EFO:0000929
xref: EV:0100096
xref: FMA:7203
xref: GAID:423
xref: galen:Kidney
xref: MA:0000368
xref: MAT:0000119
xref: MESH:A.05.810.453
xref: MIAA:0000119
xref: ncithesaurus:Kidney
xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA
xref: SCTID:181414000
xref: TAO:0000529
xref: XAO:0003267
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0000160
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0005172 ! abdomen organ
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0003918 {evidence="definitional"} ! kidney mesenchyme
relationship: develops_from UBERON:0005095 ! kidney rudiment
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001008 ! excretory system

[Term]
id: UBERON:0002114
name: duodenum
namespace: uberon
alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "proximal intestine" RELATED [BTO:0000365]
synonym: "upper intestine" RELATED [BTO:0000365]
xref: AAO:0010402
xref: BTO:0000365
xref: EFO:0000851
xref: EHDAA:3830
xref: EHDAA:3937
xref: EMAPA:17178
xref: EMAPA:17193
xref: EMAPA:18661
xref: EMAPA:18852
xref: EV:0100073
xref: FMA:7206
xref: GAID:284
xref: galen:Duodenum
xref: MA:0000338
xref: MAT:0000044
xref: MESH:A.03.492.411.620.270
xref: MIAA:0000044
xref: ncithesaurus:Duodenum
xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA
xref: SCTID:181247007
xref: VHOG:0000052
xref: XAO:0000236
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0002120
name: pronephros
namespace: uberon
alt_id: UBERON:0005794
alt_id: UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151
def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, Wikipedia:Pronephros]
comment: Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104
subset: organ_slim
subset: uberon_slim
synonym: "archinephron" RELATED [BTO:0001541]
synonym: "embryonic kidney" RELATED [BTO:0001541]
synonym: "pronephric kidney" EXACT [XAO:0002000]
synonym: "pronephron" RELATED [BTO:0001541]
xref: AAO:0011089
xref: BTO:0001541
xref: EFO:0000927
xref: EHDAA2:0001570
xref: EHDAA:1017
xref: EMAPA:16579
xref: FMA:72170
xref: MAT:0000117
xref: MIAA:0000117
xref: ncithesaurus:Pronephros
xref: SCTID:308804007
xref: TAO:0000151
xref: VHOG:0000037
xref: XAO:0002000
xref: ZFA:0000151
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002113 {source="GO"} ! kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0005095 {source="GO"} ! kidney rudiment
relationship: develops_from UBERON:0005721 {source="ZFA"} ! pronephric mesoderm
relationship: develops_from UBERON:0005754 ! rostral part of nephrogenic cord
relationship: part_of UBERON:0003887 {source="OG"} ! intraembryonic coelom

[Term]
id: UBERON:0002133
name: atrioventricular valve
namespace: uberon
alt_id: UBERON:FMA_7233-ZFA_0005064
def: "Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. <a href='ZFIN_jump?record=ZDB-PUB-010912-30'>Hu et al. 2001.</a>" [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "AV valve" EXACT []
xref: EHDAA2:0000153
xref: EHDAA:7421
xref: FMA:7233
xref: galen:AtrioventricularValve
xref: MA:0002789
xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg
xref: SCTID:11124005
xref: TAO:0005064
xref: VHOG:0001472
xref: ZFA:0005064
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000946 ! cardial valve
relationship: connects UBERON:0002081 ! cardiac atrium
relationship: connects UBERON:0002082 ! cardiac ventricle
relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion

[Term]
id: UBERON:0002134
name: tricuspid valve
namespace: uberon
alt_id: UBERON:FMA_7234-MA_0000090
def: "Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve.[FMA]" [FMA:FMA, Wikipedia:Tricuspid_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "right atrioventricular valve" EXACT []
synonym: "valva atrioventricularis dextra" EXACT [FMA:7234, FMA:TA]
xref: EHDAA2:0004029
xref: EHDAA:7427
xref: EMAPA:17873
xref: FMA:7234
xref: GAID:567
xref: galen:TricuspidValve
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000090
xref: MESH:A.07.541.510.893
xref: ncithesaurus:Tricuspid_Valve
xref: OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0002081
xref: SCTID:181288007
xref: VHOG:0000816
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002133 ! atrioventricular valve
is_a: UBERON:0005208 ! right atrium valve
relationship: part_of UBERON:0005965 ! outflow part of right atrium

[Term]
id: UBERON:0002135
name: mitral valve
namespace: uberon
alt_id: UBERON:FMA_7235-MA_0000088
def: "Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve.[FMA]" [FMA:FMA, Wikipedia:Mitral_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bicuspid valve" RELATED []
synonym: "left atrioventricular valve" EXACT []
synonym: "valva atrioventricularis sinistra" EXACT [FMA:7235, FMA:TA]
xref: EFO:0003933
xref: EHDAA2:0000168
xref: EMAPA:17871
xref: FMA:7235
xref: GAID:565
xref: galen:MitralValve
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000088
xref: MESH:A.07.541.510.507
xref: ncithesaurus:Mitral_Valve
xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA
xref: SCTID:181286006
xref: VHOG:0000817
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002133 ! atrioventricular valve
disjoint_from: UBERON:0007120 ! premolar tooth

[Term]
id: UBERON:0002137
name: aortic valve
namespace: uberon
alt_id: UBERON:FMA_7236-MA_0000087
def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA]" [FMA:FMA, Wikipedia:Aortic_valve]
comment: Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets)
subset: uberon_slim
xref: BTO:0004628
xref: EFO:0003879
xref: EHDAA2:0000134
xref: EHDAA:4410
xref: EMAPA:17870
xref: FMA:7236
xref: GAID:563
xref: galen:AorticValve
xref: MA:0000087
xref: MESH:A.07.541.510.110
xref: ncithesaurus:Aortic_Valve
xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA
xref: SCTID:181287002
xref: VHOG:0000815
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve
relationship: part_of UBERON:0005956 ! outflow part of left ventricle

[Term]
id: UBERON:0002146
name: pulmonary valve
namespace: uberon
alt_id: UBERON:FMA_7246-MA_0000089
def: "Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonic valve" EXACT []
xref: EHDAA2:0001577
xref: EHDAA:4412
xref: EMAPA:17872
xref: FMA:7246
xref: GAID:566
xref: galen:PulmonaryValve
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000089
xref: MESH:A.07.541.510.738
xref: ncithesaurus:Pulmonary_Valve
xref: OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA
xref: SCTID:181289004
xref: VHOG:0000814
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve

[Term]
id: UBERON:0002165
name: endocardium
namespace: uberon
alt_id: UBERON:FMA_7280-XAO_0000066-ZFA_0001320
def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium]
comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010
subset: uberon_slim
subset: vertebrate_core
synonym: "heart endocardium" EXACT []
xref: AAO:0010408
xref: BTO:0000387
xref: EFO:0000821
xref: EHDAA2:0004153
xref: EV:0100021
xref: FMA:7280
xref: GAID:550
xref: galen:Endocardium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray493.png/200px-Gray493.png
xref: MA:0000076
xref: MAT:0000455
xref: MESH:A.07.541.207
xref: ncithesaurus:Endocardium
xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw
xref: SCTID:362013006
xref: TAO:0001320
xref: VHOG:0000084
xref: XAO:0000066
xref: ZFA:0001320
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002523 ! tunica intima
is_a: UBERON:0005983 ! heart layer
relationship: develops_from UBERON:0003084 ! heart primordium
relationship: develops_from UBERON:0007280 {evidence="definitional"} ! presumptive endocardium
relationship: has_part UBERON:0001986 ! endothelium
relationship: has_part UBERON:0006225 {source="UBERON"} ! endocardial tissue
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002167
name: right lung
namespace: uberon
alt_id: UBERON:FMA_7309-MA_0000426
def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001730
xref: EHDAA:4969
xref: EMAPA:17661
xref: FMA:7309
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png
xref: MA:0000426
xref: ncithesaurus:Right_Lung
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA
xref: SCTID:361967000
xref: VHOG:0000301
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002048 ! lung
intersection_of: UBERON:0002048 ! lung
intersection_of: in_right_side_of UBERON:0000170 ! pair of lungs
relationship: in_right_side_of UBERON:0000170 ! pair of lungs

[Term]
id: UBERON:0002168
name: left lung
namespace: uberon
alt_id: UBERON:FMA_7310-MA_0000425
def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]" [FMA:FMA, Wikipedia:Left_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0000943
xref: EHDAA:4947
xref: EMAPA:17653
xref: FMA:7310
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dd/Gray973.png/200px-Gray973.png
xref: MA:0000425
xref: ncithesaurus:Left_Lung
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA
xref: SCTID:361982005
xref: VHOG:0000618
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002048 ! lung
intersection_of: UBERON:0002048 ! lung
intersection_of: in_left_side_of UBERON:0000170 ! pair of lungs
relationship: in_left_side_of UBERON:0000170 ! pair of lungs

[Term]
id: UBERON:0002169
name: alveolar sac
namespace: uberon
alt_id: UBERON:0008871
alt_id: UBERON:FMA_7317-MA_0000418
def: "the small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters" [MP:0010902, Wikipedia:Alveolar_sac]
subset: uberon_slim
synonym: "air sac" RELATED [MP:0010902]
synonym: "pulmonary alveolar sac" EXACT [MP:0010902]
synonym: "sacculus alveolaris" EXACT [FMA:7317]
xref: BTO:0000061
xref: FMA:7317
xref: MA:0000418
xref: ncithesaurus:Alveolar_Sac
xref: OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000115 ! lung epithelium
is_a: UBERON:0007499 ! epithelial sac
intersection_of: UBERON:0007499 ! epithelial sac
intersection_of: part_of UBERON:0008874 ! pulmonary acinus
relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system
relationship: part_of UBERON:0008874 {source="FMA"} ! pulmonary acinus

[Term]
id: UBERON:0002182
name: main bronchus
namespace: uberon
alt_id: UBERON:FMA_7405-MA_0000438
def: "The trachea (windpipe) divides into two main bronchi." [Wikipedia:Main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "bronchus principalis" EXACT []
synonym: "mainstem bronchus" EXACT []
synonym: "primary bronchus" EXACT []
synonym: "principal bronchus" EXACT []
xref: EFO:0000932
xref: EHDAA2:0001044
xref: EHDAA:3072
xref: EMAPA:16849
xref: FMA:7405
xref: MA:0000438
xref: ncithesaurus:Main_Bronchus
xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA
xref: SCTID:245508000
xref: VHOG:0000370
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002185 ! bronchus
relationship: continuous_with UBERON:0002183 {source="FMA"} ! lobar bronchus
relationship: continuous_with UBERON:0003126 {source="FMA"} ! trachea
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium

[Term]
id: UBERON:0002183
name: lobar bronchus
namespace: uberon
alt_id: UBERON:FMA_7406-MA_0000437
def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [GO:0060482, Wikipedia:Lobar_bronchus]
subset: organ_slim
subset: uberon_slim
synonym: "secondary bronchus" EXACT []
xref: EHDAA:4955
xref: EHDAA:4963
xref: EHDAA:4977
xref: EHDAA:4985
xref: EHDAA:4993
xref: EHDAA:8175
xref: EHDAA:8187
xref: EHDAA:8203
xref: EHDAA:8213
xref: EHDAA:8225
xref: EMAPA:17388
xref: EMAPA:17982
xref: EMAPA:17987
xref: EMAPA:17992
xref: EMAPA:17998
xref: FMA:7406
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg
xref: MA:0000437
xref: ncithesaurus:Lobar_Bronchus
xref: OpenCyc:Mx4rwQMLXJwpEbGdrcN5Y29ycA
xref: SCTID:245509008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002185 ! bronchus
relationship: continuous_with UBERON:0002184 {source="FMA"} ! segmental bronchus
relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung

[Term]
id: UBERON:0002184
name: segmental bronchus
namespace: uberon
alt_id: UBERON:FMA_7407-MA_0000439
def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [Wikipedia:Segmental_bronchus]
subset: organ_slim
subset: uberon_slim
synonym: "tertiary bronchus" EXACT []
xref: EHDAA:7043
xref: EHDAA:7049
xref: EHDAA:7058
xref: EHDAA:7064
xref: EHDAA:7070
xref: FMA:7407
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg
xref: MA:0000439
xref: ncithesaurus:Segmental_Bronchus
xref: OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA
xref: SCTID:245513001
xref: VHOG:0001446
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung

[Term]
id: UBERON:0002185
name: bronchus
namespace: uberon
alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
def: "A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
subset: organ_slim
subset: uberon_slim
synonym: "bronchi" EXACT PLURAL []
synonym: "bronchial tissue" RELATED [BTO:0001340]
synonym: "bronchial trunk" EXACT []
xref: BTO:0001340
xref: EFO:0000932
xref: EV:0100041
xref: FMA:7409
xref: GAID:346
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Respiratory_system_complete_numbered.svg/200px-Respiratory_system_complete_numbered.svg.png
xref: MA:0000436
xref: MAT:0000133
xref: MESH:A.04.411.125
xref: MIAA:0000133
xref: ncithesaurus:Bronchus
xref: SCTID:181215002
xref: VHOG:0000262
xref: XAO:0000121
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0007196 ! tracheobronchial tree

[Term]
id: UBERON:0002186
name: bronchiole
namespace: uberon
alt_id: UBERON:FMA_7410-MA_0000422
def: "the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
subset: uberon_slim
synonym: "bronchiolus" RELATED [BTO:0002375]
synonym: "lobular bronchiole" EXACT [FMA:7410]
xref: BTO:0002375
xref: EHDAA:8171
xref: EHDAA:8183
xref: EHDAA:8199
xref: EHDAA:8221
xref: FMA:7410
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000422
xref: ncithesaurus:Bronchiole
xref: OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA
xref: SCTID:278982001
xref: VHOG:0000675
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048 {source="MA"} ! lung
relationship: part_of UBERON:0007196 {source="FMA"} ! tracheobronchial tree
relationship: part_of UBERON:0010368 {source="ncut"} ! pulmonary lobule

[Term]
id: UBERON:0002187
name: terminal bronchiole
namespace: uberon
alt_id: UBERON:FMA_7411-MA_0000424
def: "A terminal bronchiole is a bronchiole at the end of the conducting zone. At the transition into the respiratory zone, alveoli become present. The terminal bronchiole is the most distal segment of the conducting zone. Each of the terminal bronchioles divides to form respiratory bronchioles which contain a small number of alveoli. Terminal bronchioles are lined with simple cuboidal epithelium containing Clara cells. Terminal bronchioles contain a limited number of ciliated cells and no goblet cells. Clara cells are non-ciliated, rounded protein secreting cells. Their secretions are a nonsticky, proteinaceous compound to maintain the airway in the smallest bronchioles. The secretion, called surfactant, reduces surface tension allowing for bronchioles to expand during inspiration and keeping the bronchioles from collapsing during expiration. Clara cells, a stem cell of the respiratory system, produce enzymes that detoxify substances dissolved in the respiratory fluid. [WP,unvetted]." [Wikipedia:Terminal_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchiolus terminalis" EXACT []
xref: BTO:0003223
xref: FMA:7411
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000424
xref: ncithesaurus:Terminal_Bronchiole
xref: OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA
xref: SCTID:278981008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002186 ! bronchiole

[Term]
id: UBERON:0002188
name: respiratory bronchiole
namespace: uberon
alt_id: UBERON:FMA_7412-MA_0000423
def: "The respiratory bronchioles are interrupted by alveoli which are thin walled evaginations. Alveolar ducts are distal continuations of the respiratory bronchioles. [WP,unvetted]." [Wikipedia:Respiratory_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchiolus respiratorius" EXACT []
xref: BTO:0003222
xref: FMA:7412
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000423
xref: ncithesaurus:Respiratory_Bronchiole
xref: OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA
xref: SCTID:128517006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002186 ! bronchiole

[Term]
id: UBERON:0002190
name: subcutaneous adipose tissue
namespace: uberon
alt_id: UBERON:FMA_74315-MA_0000473
synonym: "fatty layer of subcutaneous tissue" EXACT [FMA:74315]
synonym: "panniculus adiposus (tela subcutanea)" EXACT [FMA:74315, FMA:TA]
synonym: "panniculus adiposus telae subcutaneae" EXACT [FMA:74315, FMA:TA]
xref: BTO:0004042
xref: FMA:74315
xref: MA:0000473
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001013 ! adipose tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002072 ! hypodermis

[Term]
id: UBERON:0002193
name: hemolymphoid system
namespace: uberon
alt_id: UBERON:FMA_74562-MA_0000013
def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." []
synonym: "haemolymphoid system" RELATED []
synonym: "hematolymphoid system" EXACT []
synonym: "lymphomyeloid complex" EXACT []
xref: EHDAA2:0004615
xref: EMAPA:18534
xref: EMAPA:18765
xref: FMA:74562
xref: MA:0000013
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 {source="MA"} ! anatomical system

[Term]
id: UBERON:0002199
name: integument
namespace: uberon
alt_id: UBERON:FMA_74657-ZFA_0000368
def: "The dermis, epidermis and hypodermis." [Wikipedia:Integument]
comment: in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates. Note that the VAO class appears to include adnexa by its definition.
subset: uberon_slim
subset: vertebrate_core
synonym: "dermal system" RELATED [BTO:0000634]
synonym: "dermoid system" RELATED [BTO:0000634]
synonym: "Hautsystem" RELATED [BTO:0000634]
synonym: "integumentum commune" EXACT [FMA:74657, FMA:TA]
synonym: "skin" RELATED []
synonym: "tegument" RELATED [BTO:0000634]
synonym: "the integument" EXACT [FMA:74657]
xref: AAO:0000239
xref: BTO:0000634
xref: EHDAA2:0001844
xref: FMA:74657
xref: galen:Integument
xref: MESH:A.17.815
xref: TAO:0000368
xref: VAO:0000029
xref: ZFA:0000368
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003102 ! surface structure
relationship: has_part UBERON:0002072 ! hypodermis
relationship: has_part UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002416 ! integumental system
relationship: surrounds UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0002200
name: vasculature of head
namespace: uberon
alt_id: UBERON:FMA_74710-ZFA_0001267
def: "A vasculature that is part of a head [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "adult head vascular network" EXACT [OBOL:automatic]
synonym: "adult head vasculature" EXACT [OBOL:automatic]
synonym: "cranial vasculature" EXACT []
synonym: "head vascular network" EXACT [OBOL:automatic]
synonym: "head vasculature" RELATED []
synonym: "vascular network of adult head" EXACT [OBOL:automatic]
synonym: "vascular network of head" EXACT [OBOL:automatic]
synonym: "vasculature of adult head" EXACT [OBOL:automatic]
xref: EFO:0003656
xref: FMA:74710
xref: TAO:0001267
xref: XAO:0004152
xref: ZFA:0001267
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0002203
name: vasculature of eye
namespace: uberon
alt_id: UBERON:FMA_74743-ZFA_0007057
def: "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726, OBOL:automatic]
comment: not part of the eye in ZFA. Note this changed to a blood vessel in ZFA
subset: vertebrate_core
synonym: "eye vascular network" EXACT [OBOL:automatic]
synonym: "eye vasculature" RELATED []
synonym: "ocular blood vessel" EXACT [ZFA:0007057]
synonym: "ocular vasculature" EXACT []
synonym: "optic vasculature" RELATED []
synonym: "vascular network of eye" EXACT [OBOL:automatic]
xref: FMA:74743
xref: SCTID:123846009
xref: TAO:0007057
xref: ZFA:0007057
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002200 ! vasculature of head
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0006876 ! vasculature of organ
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye

[Term]
id: UBERON:0002204
name: musculoskeletal system
namespace: uberon
alt_id: UBERON:FMA_7482-MA_0002418-XAO_0000168
def: "Anatomical system that consists of the muscular and skeletal systems." [VAO:0000031, Wikipedia:Musculoskeletal_system]
subset: uberon_slim
synonym: "musculo-skeletal system" EXACT []
xref: AAO:0010546
xref: EV:0100139
xref: FMA:7482
xref: GAID:98
xref: MA:0002418
xref: MESH:A.02
xref: ncithesaurus:Musculoskeletal_System
xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g
xref: SCTID:278858007
xref: VAO:0000031
xref: VHOG:0001275
xref: XAO:0000168
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: has_developmental_contribution_from UBERON:0000926 ! mesoderm
relationship: has_part UBERON:0000383 ! musculature of body

[Term]
id: UBERON:0002205
name: manubrium of sternum
namespace: uberon
alt_id: UBERON:FMA_7486-ZFA_0001601
def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium]
comment: not to be confused with manubrium of eardrum. todo - find reference to support disjointness assertion with teleost
subset: uberon_slim
synonym: "manubrium" BROAD []
synonym: "manubrium of sternum" EXACT []
synonym: "manubrium sterni" EXACT [EMAPA:18723]
synonym: "sternal manubrium" EXACT [MA:0001332]
xref: AAO:0000680
xref: EMAPA:18723
xref: FMA:7486
xref: GAID:247
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray116.png/200px-Gray116.png
xref: MA:0001332
xref: MESH:A.02.835.232.904.766.442
xref: ncithesaurus:Sternal_Manubrium
xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA
xref: SCTID:182014008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0005181 ! thoracic segment organ
disjoint_from: UBERON:0006722 ! manubrium of malleus
relationship: part_of UBERON:0000975 ! sternum

[Term]
id: UBERON:0002207
name: xiphoid process
namespace: uberon
alt_id: UBERON:FMA_7488-MA_0001884
def: "The xiphoid process, also known as the xiphisternum, is a small cartilaginous extension to the lower part of the sternum which is usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376, Wikipedia:Xiphoid_process]
comment: this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements
subset: uberon_slim
synonym: "metasternum" RELATED [Wikipedia:Xiphoid_process]
synonym: "processus xiphoideus" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphisternum" EXACT [Wikipedia:Xiphoid_process]
synonym: "xiphoid" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphoid process" EXACT [FMA:7488]
synonym: "xiphoid process" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphoid process of sternum" EXACT []
synonym: "xiphoideus" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphosternal junction" RELATED [Wikipedia:Xiphoid_process]
synonym: "xyphoid" RELATED [Wikipedia:Xiphoid_process]
xref: FMA:7488
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray117.png/200px-Gray117.png
xref: MA:0001334
xref: ncithesaurus:Xiphoid_Process
xref: SCTID:272711000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0000975 ! sternum

[Term]
id: UBERON:0002208
name: sternebra
namespace: uberon
alt_id: UBERON:FMA_7489-MA_0001333
def: "one of the bony segments of the sternum[TFD]." [http://medical-dictionary.thefreedictionary.com/sternebra, Wikipedia:Sternebra]
comment: Note that some definitions state that this a segment of the primordial sternum. We classify this under skeletal element, we are neutral as to whether these are bones or segments (fused bone)
subset: uberon_slim
synonym: "sternebral bone" RELATED [EMAPA:18724]
xref: EMAPA:18724
xref: FMA:7489
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg
xref: MA:0001333
xref: SCTID:95955004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0005181 ! thoracic segment organ
relationship: develops_from UBERON:0006295 ! sternebral bone pre-cartilage condensation
relationship: part_of UBERON:0000975 {source="MA"} ! sternum

[Term]
id: UBERON:0002209
name: fibrous joint
namespace: uberon
alt_id: UBERON:FMA_7492-MA_0000321
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]" [FMA:FMA, Wikipedia:Fibrous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "articulatio fibrosa" EXACT []
xref: AEO:0000178
xref: EHDAA2:0003178
xref: FMA:7492
xref: MA:0000321
xref: SCTID:37772004
xref: TAO:0005156
xref: ZFA:0005156
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint

[Term]
id: UBERON:0002210
name: syndesmosis
namespace: uberon
alt_id: UBERON:FMA_7494-MA_0001500
def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA]" [FMA:FMA, Wikipedia:Syndesmosis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:7494
xref: MA:0001500
xref: SCTID:89358004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint

[Term]
id: UBERON:0002213
name: cartilaginous joint
namespace: uberon
alt_id: UBERON:FMA_7496-MA_0000320
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA]" [FMA:FMA, Wikipedia:Cartilaginous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "articulatio cartilaginea" EXACT []
xref: FMA:7496
xref: MA:0000320
xref: SCTID:58442004
xref: TAO:0005155
xref: ZFA:0005155
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint

[Term]
id: UBERON:0002215
name: synchondrosis
namespace: uberon
alt_id: UBERON:FMA_7497-MA_0001501
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA]" [FMA:FMA, Wikipedia:Synchondrosis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilago epiphysialis" EXACT [FMA:7497, FMA:TA]
synonym: "epiphysial cartilage" EXACT []
synonym: "primary cartilaginous joint" EXACT []
xref: FMA:7497
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray297.png/200px-Gray297.png
xref: MA:0001501
xref: SCTID:42903008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint

[Term]
id: UBERON:0002216
name: symphysis
namespace: uberon
alt_id: UBERON:FMA_7498-MA_0001504
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis]
comment: Editors note: consider adding fibrocartilage class
subset: uberon_slim
synonym: "secondary cartilaginous joint" EXACT [FMA:7498]
xref: FMA:7498
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray298.png/200px-Gray298.png
xref: MA:0001504
xref: SCTID:1584001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002209 {source="MA"} ! fibrous joint
is_a: UBERON:0002213 {source="FMA"} ! cartilaginous joint

[Term]
id: UBERON:0002217
name: synovial joint
namespace: uberon
alt_id: UBERON:FMA_7501-MA_0000322
def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]" [FMA:FMA, Wikipedia:Synovial_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "articulatio synoviale" EXACT []
synonym: "diarthrodial joints" RELATED [ZFA:0005153]
synonym: "diarthroses" EXACT [ZFA:0005153]
xref: AEO:0000183
xref: EHDAA2:0003183
xref: FMA:7501
xref: galen:SynovialJoint
xref: MA:0000322
xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA
xref: SCTID:113234001
xref: TAO:0005153
xref: ZFA:0005153
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint

[Term]
id: UBERON:0002218
name: tympanic ring
namespace: uberon
alt_id: UBERON:FMA_75053-MA_0001225
def: "a C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mam- mals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]." [MP:0000030, PMID:11237469]
comment: AO notes: in FMA, the tympanic ring is an anatomical line. Howevever PMID:11237469 states: "the tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane". Taxon notes: check amphibians - in AAO "Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane". Gene notes: Gsc and Prx1 are essential for tympanic ring development
xref: AAO:0000615
xref: EMAPA:19197
xref: MA:0001225
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 {source="PMID:11237469"} ! intramembranous bone
is_a: UBERON:0003457 ! head bone
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear

[Term]
id: UBERON:0002221
name: fontanelle
namespace: uberon
alt_id: UBERON:FMA_75438-MA_0001465
def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [Wikipedia:Fontanelle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "fontanel" EXACT []
xref: FMA:75438
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png
xref: MA:0001465
xref: ncithesaurus:Fontanelle
xref: TAO:0001738
xref: ZFA:0005536
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: adjacent_to UBERON:0003685 ! cranial suture
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0002222
name: perichondrium
namespace: uberon
alt_id: UBERON:FMA_75446-ZFA_0001634
def: "Fibrous connective tissue that surrounds cartilage." [https://github.com/cmungall/uberon/issues/26, VAO:0000036, Wikipedia:Perichondrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilage connective tissue" RELATED []
synonym: "perichondral region of cartilage" RELATED []
synonym: "perichondral region of cartilage element" RELATED []
xref: AAO:0010445
xref: BTO:0005089
xref: FMA:75446
xref: MA:0003008
xref: SCTID:11881003
xref: TAO:0001643
xref: VAO:0000036
xref: XAO:0004049
xref: ZFA:0001634
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0002418 ! cartilage tissue

[Term]
id: UBERON:0002224
name: thoracic cavity
namespace: uberon
alt_id: UBERON:FMA_7565-MA_0000032
def: "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavity of chest" EXACT []
synonym: "cavity of thorax" EXACT []
synonym: "chest cavity" EXACT []
synonym: "pectoral cavity" EXACT []
synonym: "space of thoracic compartment" EXACT [FMA:7565]
xref: FMA:7565
xref: GAID:93
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png
xref: MA:0000032
xref: MESH:A.01.911.800
xref: ncithesaurus:Thoracic_Cavity
xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg
xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA
xref: SCTID:243949006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0002225
name: costal arch
namespace: uberon
alt_id: UBERON:FMA_7569-MA_0001396
def: "The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs -- specifically, from the eighth rib to the tenth rib." [Wikipedia:Costal_margin]
comment: todo - split? check part_of relationship
synonym: "arcus costae" RELATED [Wikipedia:Costal_margin]
synonym: "costal margin" RELATED [Wikipedia:Costal_margin]
synonym: "subcostal arch" RELATED [Wikipedia:Costal_margin]
xref: FMA:7569
xref: FMA:7570
xref: MA:0001396
xref: ncithesaurus:Costal_Arch
xref: SCTID:367767002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006800 {source="FMA"} ! anatomical line
relationship: part_of UBERON:0002228 {source="MA"} ! rib

[Term]
id: UBERON:0002226
name: basilar membrane of cochlea
namespace: uberon
alt_id: UBERON:FMA_75706-MA_0001190
def: "a stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [Wikipedia:Basilar_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basilar membrane" EXACT []
xref: FMA:75706
xref: GAID:872
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Organ_of_corti.svg/200px-Organ_of_corti.svg.png
xref: MA:0001190
xref: MESH:A.09.246.631.246.125
xref: ncithesaurus:Basilar_Membrane
xref: NIF_GrossAnatomy:birnlex_2521
xref: SCTID:362574003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005764 ! acellular membrane
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002227
name: spiral organ of cochlea
namespace: uberon
alt_id: UBERON:FMA_75715-MA_0001193
def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
comment: Todo - check XAO, taxon constraints
subset: uberon_slim
synonym: "basilar papilla" RELATED [BTO:0001691]
synonym: "cochlear spiral organ" EXACT []
synonym: "Corti's organ" RELATED [BTO:0001691]
synonym: "organ of corti" RELATED []
synonym: "organum spirale" RELATED [BTO:0001691]
synonym: "spiral organ" EXACT []
synonym: "spiral organ of corti" EXACT []
xref: AAO:0011018
xref: BTO:0001691
xref: EFO:0001364
xref: EMAPA:19061
xref: EMAPA:19151
xref: EV:0100364
xref: FMA:75715
xref: GAID:772
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0001193
xref: ncithesaurus:Organ_of_Corti
xref: ncithesaurus:Spiral_Organ_of_Corti
xref: NIF_GrossAnatomy:birnlex_2526
xref: XAO:0003145
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002228
name: rib
namespace: uberon
alt_id: UBERON:FMA_7574-MA_0000315-ZFA_0000538
def: "An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body." [Wikipedia:Rib, ZFIN:curator]
comment: Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as "true ribs", are directly attached to the sternum through the costal cartilage. The following five sets are known as "false ribs", three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals.[1]
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal rib" RELATED []
synonym: "pleural rib" RELATED []
xref: AAO:0000545
xref: EFO:0003066
xref: EMAPA:18010
xref: FMA:7574
xref: GAID:245
xref: galen:Rib
xref: MA:0000315
xref: MESH:A.02.835.232.904.567
xref: ncithesaurus:Rib
xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA
xref: SCTID:302523002
xref: TAO:0000538
xref: VHOG:0001154
xref: ZFA:0000538
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003459 ! chest bone
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0010913 ! vertebral element
relationship: develops_from UBERON:0006288 {evidence="definitional"} ! rib cartilage condensation
relationship: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003252 ! rib cage

[Term]
id: UBERON:0002229
name: interparietal bone
namespace: uberon
alt_id: UBERON:FMA_75748-MA_0001467
def: "the bone of the cranium that lies above and anterior to the occipital bone in some mammals." [MP:0000077, Wikipedia:Interparietal_bone]
comment: Taxon notes: rarely present in humans[PMID:3654370]
synonym: "inca bone" RELATED [Wikipedia:Interparietal_bone]
synonym: "inter-parietal bone" EXACT [EMAPA:19017]
synonym: "interparietal" EXACT [EHDAA:9530]
synonym: "os interparietale" RELATED [Wikipedia:Interparietal_bone]
synonym: "ossicle of Goethe" RELATED [Wikipedia:Interparietal_bone]
synonym: "post-parietal bone" RELATED [VHOG:0001327]
synonym: "postparietal" RELATED [VHOG:0001327]
synonym: "postparietal bone" RELATED [VHOG:0001327]
xref: EHDAA:9530
xref: EMAPA:19017
xref: FMA:75748
xref: MA:0001467
xref: SCTID:369438005
xref: VHOG:0001327
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004766 ! cranial bone
relationship: anterior_to UBERON:0001676 ! occipital bone
relationship: develops_from UBERON:0006251 {evidence="definitional"} ! interparietal bone primordium
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0002230
name: head of rib
namespace: uberon
alt_id: UBERON:FMA_7575-MA_0001415
def: "The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with. It is marked by a kidney-shaped articular surface, divided by a horizontal crest into two facets for articulation with the depression formed on the bodies of two adjacent thoracic vertebrae; the upper facet is the smaller; to the crest is attached the interarticular ligament. [WP,unvetted]." [Wikipedia:Head_of_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "rib head" EXACT []
xref: FMA:7575
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray122.png/200px-Gray122.png
xref: MA:0001415
xref: ncithesaurus:Rib_Head
xref: SCTID:263358001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment of rib

[Term]
id: UBERON:0002231
name: body of rib
namespace: uberon
alt_id: UBERON:FMA_7577-MA_0001416
comment: This class was created automatically from a combination of ontologies
synonym: "rib body" EXACT []
synonym: "rib shaft" EXACT []
synonym: "shaft of rib" EXACT []
xref: FMA:7577
xref: MA:0001416
xref: ncithesaurus:Rib_Shaft
xref: SCTID:263361000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002228 ! rib

[Term]
id: UBERON:0002233
name: tectorial membrane of cochlea
namespace: uberon
alt_id: UBERON:FMA_75805-MA_0001199
def: "." [Wikipedia:Tectorial_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tectorial membrane" EXACT []
synonym: "tectorial membrane of spiral organ of cochlea" EXACT []
xref: FMA:75805
xref: GAID:876
xref: MA:0001199
xref: MESH:A.09.246.631.246.292.906
xref: ncithesaurus:Tectorial_Membrane
xref: NIF_GrossAnatomy:birnlex_2531
xref: SCTID:368960006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005764 ! acellular membrane
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002234
name: proximal phalanx of finger
namespace: uberon
alt_id: UBERON:FMA_75816-MA_0001395
def: "A proximal phalanx that is part of a finger [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "hand proximal phalanx" EXACT [MA:0001395]
synonym: "proximal phalanx of hand" EXACT []
xref: FMA:75816
xref: MA:0001395
xref: ncithesaurus:Proximal_Phalanx_of_Hand
xref: SCTID:181986000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004302 ! proximal phalanx
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0002235
name: tubercle of rib
namespace: uberon
alt_id: UBERON:FMA_7583-MA_0001417
def: "The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]." [Wikipedia:Tubercle_(rib)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "rib tubercle" EXACT []
xref: FMA:7583
xref: MA:0001417
xref: ncithesaurus:Rib_Tubercle
xref: SCTID:361104005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0005813 ! tubercle
intersection_of: UBERON:0005813 ! tubercle
intersection_of: part_of UBERON:0002231 ! body of rib
relationship: part_of UBERON:0002231 ! body of rib
relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment of rib

[Term]
id: UBERON:0002236
name: costal cartilage
namespace: uberon
alt_id: UBERON:FMA_7591-MA_0000106
def: "The costal cartilages are bars of hyaline cartilage which serve to prolong the ribs forward and contribute very materially to the elasticity of the walls of the thorax. [WP,unvetted]." [Wikipedia:Costal_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:7591
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png
xref: MA:0000106
xref: ncithesaurus:Costal_Cartilage
xref: OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA
xref: SCTID:244703004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003572 ! chest connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004267 ! back connective tissue
relationship: part_of UBERON:0002228 ! rib

[Term]
id: UBERON:0002237
name: true rib
namespace: uberon
alt_id: UBERON:FMA_7592-MA_0001419
def: "The first seven ribs are connected behind with the vertebral column, and in front, through the intervention of the costal cartilages, with the sternum; they are called true ribs or vertebro-sternal ribs. False ribs are interconnected membranous structures that are connected with the sternum process. [WP,unvetted]." [Wikipedia:True_ribs]
comment: This class was created automatically from a combination of ontologies
synonym: "costa vera" EXACT []
synonym: "costae verae" RELATED PLURAL [Wikipedia:True_ribs]
xref: FMA:7592
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png
xref: MA:0001419
xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA
xref: SCTID:368044009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0002238
name: false rib
namespace: uberon
alt_id: UBERON:FMA_7594-MA_0001398
def: "The false ribs are the five sets of ribs below the top seven true ribs. Of these: the first three (eighth, ninth, and tenth rib) have their cartilages attached to the cartilage of the rib above (vertebro-chondral): the last two are free at their anterior extremities and are termed floating ribs or vertebral ribs. [WP,unvetted]." [Wikipedia:False_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "asternal ribs" RELATED [Wikipedia:False_ribs]
synonym: "costa spuria" EXACT []
synonym: "costae spuriae" RELATED PLURAL [Wikipedia:False_ribs]
xref: FMA:7594
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png
xref: MA:0001398
xref: OpenCyc:Mx4rwLzzTZwpEbGdrcN5Y29ycA
xref: SCTID:368045005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0002239
name: floating rib
namespace: uberon
alt_id: UBERON:FMA_7595-MA_0001399
def: "Floating ribs are four atypical ribs (two lowermost pairs, XI-XII) in the human ribcage. They are called so because they are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs. Others have a third pair. Most, however, possess only two pairs. Their position can be permanently altered by a form of body modification called tightlacing, which uses a corset to compress and move the ribs. [WP,unvetted]." [Wikipedia:Floating_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "costa fluitante" EXACT []
xref: FMA:7595
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Skeleton_woman_back.png/200px-Skeleton_woman_back.png
xref: MA:0001399
xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA
xref: SCTID:368046006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002238 ! false rib

[Term]
id: UBERON:0002240
name: spinal cord
namespace: uberon
alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075
def: "Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord]
comment: TODO: add superclass to unify with VNC?
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "medulla spinalis" RELATED [BTO:0001279]
synonym: "spinal cord structure" RELATED [ZFA:0000075]
synonym: "spinal medulla" RELATED [BTO:0001279]
xref: AAO:0010151
xref: BM:SpC
xref: BTO:0001279
xref: EFO:0000110
xref: EHDAA2:0001255
xref: EHDAA:2863
xref: EMAPA:17577
xref: EMAPA:17700
xref: EV:0100316
xref: FMA:7647
xref: GAID:695
xref: MA:0000216
xref: MAT:0000183
xref: MESH:A.08.186.854
xref: MIAA:0000183
xref: ncithesaurus:Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1709
xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA
xref: SCTID:180959008
xref: TAO:0000075
xref: VHOG:0000601
xref: XAO:0000020
xref: ZFA:0000075
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0000955
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005174 ! back organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003076 ! posterior neural tube
relationship: develops_from UBERON:0006241 {evidence="definitional"} ! future spinal cord
relationship: has_developmental_contribution_from UBERON:0003853 {evidence="definitional"} ! spinal cord neural crest
relationship: part_of UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0002241
name: chondrocranium
namespace: uberon
alt_id: UBERON:FMA_76621-XAO_0003059-ZFA_0001424
def: "Anatomical cluster that is part of the cranium and composed entirely of either cartilage, cartilage replacement bones or a mixture of both[ZFA]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://medical-dictionary.thefreedictionary.com/chondrocranium, ZFA:0001424]
comment: note the definition here specifically mentions cartilage or cartilage replacement bones. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes membrane bones
subset: vertebrate_core
synonym: "calvarium" RELATED [MA:0000317]
synonym: "neurocranium" RELATED INCONSISTENT [MA:0000317]
xref: AAO:0010169
xref: EHDAA2:0000243
xref: EMAPA:17681
xref: TAO:0001424
xref: VHOG:0000288
xref: ZFA:0001424
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0002244
name: premaxilla
namespace: uberon
alt_id: UBERON:FMA_76869-MA_0001493-ZFA_0000567
def: "One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]. The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish[ZFA]. the embryonic bone that later fuses with the maxilla to form the incisive bone OR the embryonic structure that forms the anterior part of the maxillae.[TFD]. Paired, intramembranous bones located at the anterior end of the skull; they form the anterior-most segment of the maxillary arch[AAO]" [http://medical-dictionary.thefreedictionary.com/premaxilla, VHOG:0000426, Wikipedia:Premaxilla, ZFIN:curator]
comment: Editors note: requires checking embryonic vs adult; isa fetal organ part in FMA; adult bone of upper jaw in AAO and ZFA; split. Note that we have loops if we add develops_from UBERON:0005620 {source="EHDAA2"}
subset: uberon_slim
subset: vertebrate_core
synonym: "premaxilla bone" RELATED [Wikipedia:Premaxilla]
synonym: "premaxillae" EXACT PLURAL []
synonym: "premaxillary bone" RELATED [Wikipedia:Premaxilla]
xref: AAO:0000461
xref: EHDAA2:0001496
xref: EHDAA:6962
xref: EHDAA:8033
xref: EMAPA:17641
xref: EMAPA:17933
xref: EMAPA:19033
xref: FMA:76869
xref: MA:0001493
xref: TAO:0000567
xref: VHOG:0000426
xref: ZFA:0000567
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! viscerocranium bone
relationship: develops_from UBERON:0004068 ! medial nasal prominence
relationship: part_of UBERON:0002397 ! maxilla

[Term]
id: UBERON:0002251
name: iliocostalis
namespace: uberon
alt_id: UBERON:FMA_77177-MA_0002319
def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77177
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png
xref: MA:0002319
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0002252
name: splenius
namespace: uberon
alt_id: UBERON:FMA_77180-MA_0002382
def: "." [Wikipedia:Splenius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77180
xref: MA:0002382
xref: ncithesaurus:Splenius
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0002253
name: incisive bone
namespace: uberon
alt_id: UBERON:FMA_77231-MA_0001485
def: "The incisive bone is the portion of the maxilla adjacent to the incisors. It is a pair of small cranial bones at the very tip of the jaws of many animals, usually bearing teeth, but not always. They are connected to the maxilla and the nasals. The term premaxilla can also be used to refer to the incisive bone. [WP,unvetted]." [Wikipedia:Incisive_bone]
comment: MA:0001485 was originally a distinct class 'incisive bone', now merged into MA:0001493 'premaxilla'. This is a general anatomical term in FMA. Here we treat it as an adult structure that develops from the embryonic premaxilla
subset: uberon_slim
synonym: "premaxilla" RELATED [MA:0001493, Wikipedia:Incisive_bone]
xref: FMA:77231
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! viscerocranium bone
relationship: develops_from UBERON:0002244 ! premaxilla
relationship: part_of UBERON:0002397 ! maxilla

[Term]
id: UBERON:0002268
name: olfactory organ
namespace: uberon
alt_id: UBERON:FMA_77659-XAO_0000273
comment: note - fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint
subset: functional_classification
synonym: "olfactory neuroepithelium" RELATED [BTO:0001772]
synonym: "organ olfactus" RELATED [BTO:0001772]
synonym: "organum olfactorium" RELATED [BTO:0001772]
xref: AAO:0010180
xref: BTO:0001772
xref: FMA:77659
xref: VHOG:0000287
xref: XAO:0000273
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: overlaps UBERON:0005725 ! olfactory system

[Term]
id: UBERON:0002276
name: lamina of spiral limbus
namespace: uberon
alt_id: UBERON:FMA_77721-MA_0001191
def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [Wikipedia:Limbus_laminae_spiralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "limbus lamina spiralis" EXACT []
synonym: "limbus laminae spiralis" EXACT []
synonym: "spiral limbus lamina" EXACT []
xref: FMA:77721
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray930.png/200px-Gray930.png
xref: MA:0001191
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002277
name: spiral sulcus
namespace: uberon
alt_id: UBERON:FMA_77744-MA_0001195
comment: This class was created automatically from a combination of ontologies
synonym: "sulcus spiralis" EXACT []
xref: FMA:77744
xref: MA:0001195
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000093 ! sulcus
relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002278
name: perilymphatic space
namespace: uberon
alt_id: UBERON:FMA_77745-MA_0000248
def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource]
subset: vertebrate_core
synonym: "perilymphatic channel" EXACT []
synonym: "Retzius space" RELATED []
synonym: "spatium perilymphaticum" RELATED []
xref: BTO:0002083
xref: FMA:77745
xref: MA:0000248
xref: SCTID:362576001
xref: ZFA:0005459
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: adjacent_to UBERON:0001839 ! bony labyrinth
relationship: adjacent_to UBERON:0001849 ! membranous labyrinth
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0002279
name: vestibular aqueduct
namespace: uberon
alt_id: UBERON:FMA_77821-MA_0001186
def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [Wikipedia:Vestibular_aqueduct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77821
xref: GAID:885
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001186
xref: MESH:A.09.246.631.909.957
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule

[Term]
id: UBERON:0002281
name: vestibular membrane of cochlear duct
namespace: uberon
alt_id: UBERON:FMA_77829-MA_0001200
def: "a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Reissner's membrane" EXACT []
synonym: "superior wall of cochlear duct" EXACT []
synonym: "vestibular membrane" EXACT []
synonym: "vestibular membrane of reissner" EXACT []
xref: FMA:77829
xref: MA:0001200
xref: SCTID:362575002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002282
name: stria vascularis of cochlear duct
namespace: uberon
alt_id: UBERON:FMA_77832-MA_0001198
def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [Wikipedia:Stria_vascularis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stria vascularis" EXACT []
synonym: "stria vascularis ductus cochlearis" RELATED [BTO:0001819]
synonym: "stria vascularis of cochlea" EXACT []
synonym: "vascular stria of cochlear duct" RELATED [BTO:0001819]
xref: BTO:0001819
xref: EFO:0001644
xref: FMA:77832
xref: GAID:875
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0001198
xref: MESH:A.09.246.631.246.292.876
xref: NIF_GrossAnatomy:birnlex_2525
xref: SCTID:279842002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="NBK53175"} ! neural crest
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002292
name: joint of head of rib
namespace: uberon
alt_id: UBERON:FMA_7951-MA_0001510
def: "The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]." [Wikipedia:Costovertebral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "costal head joint" EXACT []
synonym: "costocorporeal joint" EXACT []
synonym: "costovertebral joint" EXACT []
synonym: "head of rib joint" EXACT [OBOL:automatic]
synonym: "joint of costal head" EXACT []
synonym: "joint of rib head" EXACT [OBOL:automatic]
synonym: "rib head joint" EXACT [OBOL:automatic]
xref: EMAPA:19020
xref: EMAPA:19208
xref: FMA:7951
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray312.png/200px-Gray312.png
xref: MA:0001510
xref: ncithesaurus:Costovertebral_Joint
xref: SCTID:263315000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002001 ! joint of rib
is_a: UBERON:0002217 ! synovial joint
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002230 ! head of rib
relationship: part_of UBERON:0002230 ! head of rib

[Term]
id: UBERON:0002293
name: costochondral joint
namespace: uberon
alt_id: UBERON:FMA_7956-MA_0001509
def: "." [Wikipedia:Costochondral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio costochondralis" EXACT []
synonym: "chondrocostal synchondrosis" EXACT []
synonym: "costochondral junction" EXACT []
synonym: "costochondral synchondrosis" EXACT []
xref: FMA:7956
xref: MA:0001509
xref: ncithesaurus:Costochondral_Joint
xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA
xref: SCTID:282413008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002001 {source="MA"} ! joint of rib
is_a: UBERON:0002215 {source="FMA"} ! synchondrosis

[Term]
id: UBERON:0002294
name: biliary system
namespace: uberon
alt_id: UBERON:FMA_79646-MA_0001273
def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "biliary apparatus" EXACT []
xref: FMA:79646
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: SCTID:361354009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0002423 ! hepatobiliary system

[Term]
id: UBERON:0002295
name: scala media
namespace: uberon
alt_id: UBERON:FMA_79789-MA_0002458
def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [WP,unvetted]." [Wikipedia:Scala_media]
comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media
subset: uberon_slim
synonym: "cochlear duct" RELATED []
xref: EHDAA2:0000262
xref: FMA:79789
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png
xref: MA:0002458
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea

[Term]
id: UBERON:0002296
name: dorsal mesentery
namespace: uberon
alt_id: UBERON:FMA_79795-ZFA_0005130
def: "The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]." [Wikipedia:Dorsal_mesentery, Wikipedia:Mesentery#Development, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal mesogastrium" RELATED [Wikipedia:Dorsal_mesentery]
xref: EHDAA2:0004560
xref: EHDAA:3019
xref: EHDAA:3033
xref: EHDAA:3921
xref: EHDAA:3934
xref: EHDAA:3957
xref: EHDAA:3971
xref: FMA:79795
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray985.png/200px-Gray985.png
xref: SCTID:308823000
xref: TAO:0005130
xref: ZFA:0005130
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_into UBERON:0002095 ! mesentery
relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery

[Term]
id: UBERON:0002298
name: brainstem
namespace: uberon
alt_id: UBERON:FMA_79876-MA_0000169
def: "The brainstem (or brain stem) is the lower part of the brain, adjoining and structurally continuous with the spinal cord. The brain stem provides the main motor and sensory innervation to the face and neck via the cranial nerves. Though small, this is an extremely important part of the brain as the nerve connections of the motor and sensory systems from the main part of the brain to the rest of the body pass through the brain stem. This includes the corticospinal tract (motor), the posterior column-medial lemniscus pathway (fine touch, vibration sensation and proprioception) and the spinothalamic tract (pain, temperature, itch and crude touch). The brain stem also plays an important role in the regulation of cardiac and respiratory function. It also regulates the central nervous system, and is pivotal in maintaining consciousness and regulating the sleep cycle. Some taxonomies describe the brain stem as the medulla oblongata (myelencephalon) and pons (part of metencephalon), whereas others include the midbrain (mesencephalon). [WP,unvetted]." [Wikipedia:Brainstem]
comment: ZFA includes the tegmentum, MA the whole midbrain. Both include medulla oblongata. Here we make an overlaps link between midbrain and brainstem. Note that ABA states that cerebellum and brainstem are spatially disjoint. We do NOT include this axiom here, as it leads to multiple inconsistencies. This needs addressed in more detail.
subset: uberon_slim
subset: vertebrate_core
synonym: "brain stem" EXACT [ABA:BS]
synonym: "truncus encephalicus" RELATED [BTO:0000146]
xref: ABA:BS
xref: BTO:0000146
xref: EFO:0001962
xref: EV:0100241
xref: FMA:79876
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png
xref: MA:0000169
xref: MESH:A.08.186.211.132
xref: ncithesaurus:Brain_Stem
xref: NIF_GrossAnatomy:birnlex_1565
xref: SCTID:180925009
xref: TAO:0002156
xref: VHOG:0001457
xref: ZFA:0001707
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0002037
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0000955 ! brain

[Term]
id: UBERON:0002299
name: alveolus of lung
namespace: uberon
alt_id: UBERON:FMA_82493-MA_0000420
def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus]
subset: uberon_slim
synonym: "alveoli" RELATED PLURAL [BTO:0000060]
synonym: "alveolus" BROAD []
synonym: "alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus]
synonym: "lung alveolus" EXACT []
synonym: "pulmonary alveolus" EXACT [FMA:7318]
xref: BTO:0000060
xref: EFO:0001985
xref: EMAPA:19182
xref: EMAPA:19184
xref: EMAPA:19186
xref: EMAPA:19188
xref: EMAPA:19190
xref: EV:0100043
xref: FMA:7318
xref: GAID:349
xref: MA:0000420
xref: MESH:A.04.411.715
xref: SCTID:361364000
xref: VHOG:0001445
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003215 ! alveolus
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002169 {source="FMA"} ! alveolar sac
relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system

[Term]
id: UBERON:0002302
name: myocardium of atrium
namespace: uberon
alt_id: UBERON:FMA_83509-MA_0000081-ZFA_0001374
def: "A myocardium that is part of a cardiac atrium [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "atrial myocardium" EXACT []
synonym: "atrium myocardium" EXACT []
synonym: "atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "atrium of heart heart muscle" EXACT [OBOL:automatic]
synonym: "atrium of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "atrium of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "atrium of heart myocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria cardiac muscle" EXACT [OBOL:automatic]
synonym: "Cardiac atria heart muscle" EXACT [OBOL:automatic]
synonym: "Cardiac atria heart myocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria muscle of heart" EXACT [OBOL:automatic]
synonym: "Cardiac atria myocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac atrium heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac atrium heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac atrium myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of Cardiac atria" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart atrium" EXACT [OBOL:automatic]
synonym: "heart atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart atrium heart muscle" EXACT [OBOL:automatic]
synonym: "heart atrium heart myocardium" EXACT [OBOL:automatic]
synonym: "heart atrium muscle of heart" EXACT [OBOL:automatic]
synonym: "heart atrium myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle of atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle of Cardiac atria" EXACT [OBOL:automatic]
synonym: "heart muscle of cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle of heart atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "heart myocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium of heart atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart of atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart of Cardiac atria" EXACT [OBOL:automatic]
synonym: "muscle of heart of cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart of heart atrium" EXACT [OBOL:automatic]
synonym: "myocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "myocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium of heart atrium" EXACT [OBOL:automatic]
xref: EFO:0003087
xref: FMA:83509
xref: MA:0000081
xref: SCTID:191910002
xref: TAO:0001374
xref: VHOG:0000602
xref: ZFA:0001374
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002349 ! myocardium
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium

[Term]
id: UBERON:0002323
name: body cavity
namespace: uberon
alt_id: UBERON:0000169
alt_id: UBERON:FMA_85006-MA_0002447-ZFA_0001438
def: "fluid-filled space between epidermis and outer lining of gut cavity[WP]. In mammals it forms the peritoneal, pleural, and pericardial cavities." [Wikipedia:Body_cavity]
comment: editor note: check the FMA placement here; add developmental relationships; check EHDAA2
subset: uberon_slim
subset: vertebrate_core
synonym: "celom" RELATED [BTO:0001707]
synonym: "coelom" EXACT []
synonym: "coelome" RELATED [BTO:0001707]
synonym: "coelomic cavity" EXACT [EHDAA2:0000267]
synonym: "hemocoel" RELATED [FBbt:00005060]
synonym: "space of body compartment" EXACT [FMA:85006]
synonym: "ventral body cavity" NARROW []
xref: AEO:0000186
xref: BTO:0001707
xref: EHDAA2:0000267
xref: FBbt:00005060
xref: FMA:85006
xref: galen:BodyCavity
xref: MA:0002447
xref: ncithesaurus:Cavity
xref: RETIRED_EHDAA2:0003186
xref: SCTID:361348008
xref: TAO:0001438
xref: ZFA:0001438
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0004458 ! body cavity or lining
relationship: develops_from UBERON:0003886 {evidence="definitional"} ! body cavity precursor

[Term]
id: UBERON:0002324
name: muscle of back
namespace: uberon
alt_id: UBERON:FMA_85216-MA_0000496
def: "A muscle organ that is part of a back [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "back muscle" EXACT []
synonym: "back muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of back" EXACT [OBOL:automatic]
xref: FMA:85216
xref: MA:0000496
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005174 ! back organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0002329
name: somite
namespace: uberon
alt_id: UBERON:FMA_85522-MIAA_0000068-XAO_0000058-ZFA_0000155
def: "A segmental mass of mesoderm in the vertebrate embryo, occurring in pairs along the notochord and developing into muscles and vertebrae[BTO]. Portion of mesoderm distributed along the two sides of the neural tube and that will eventually become dermis (dermatome), skeletal muscle (myotome), and vertebrae (sclerotome)[WP]. In Zebrafish: Any of the approximately 45 bilaterally paired blocks of mesoderm cells, lying on either side of the notochord and neural tube, and forming sequentially starting at the head during development of the embryo. Together they give rise to the axial skeleton (from the sclerotome), associated musculature (from the myotome), and dermis (from the dermatome). // Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a>" [BTO:0001558, OMD:somite, Wikipedia:Somite, XB:curator, ZFIN:curator]
comment: Editor notes: currently classified as an epithelial vesicle, consistent with EHDAA2 and UBERONREF:0000002. Consider making "somitic mesoderm" a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk // When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248]
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelial somite" RELATED [UBERONREF:0000002]
synonym: "mesodermal cluster" EXACT [GO:0001756]
synonym: "somites" RELATED PLURAL []
synonym: "somitic mesoderm" RELATED []
xref: AAO:0010569
xref: BTO:0001558
xref: EHDAA2:0003436
xref: EHDAA:366
xref: EHDAA:699
xref: FMA:85522
xref: GAID:1306
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000068
xref: MESH:A.16.254.425.660.750
xref: MIAA:0000068
xref: ncithesaurus:Somite
xref: TAO:0000155
xref: VHOG:0000191
xref: XAO:0000058
xref: ZFA:0000155
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle
relationship: develops_from UBERON:0003059 {source="ZFA"} ! presomitic mesoderm

[Term]
id: UBERON:0002330
name: exocrine system
namespace: uberon
alt_id: UBERON:FMA_85539-MA_0002411
def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_system]
subset: uberon_slim
synonym: "exocrine glandular system" EXACT [EHDAA2:0002225]
xref: EHDAA2:0002225
xref: FMA:85539
xref: MA:0002411
xref: ncithesaurus:Exocrine_System
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0002333
name: pulmonary trunk
namespace: uberon
alt_id: UBERON:FMA_8612-MA_0002033
def: "Pulmonary arterial trunk which is continuous with the right ventricle.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_trunk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonary artery (trunk)" EXACT []
synonym: "trunk of pulmonary arterial tree" EXACT []
xref: EFO:0001399
xref: EHDAA2:0001576
xref: EHDAA:9831
xref: EMAPA:17015
xref: EMAPA:18240
xref: FMA:8612
xref: galen:PulmonaryTrunk
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002033
xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA
xref: VHOG:0001134
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
relationship: continuous_with UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0001009 ! circulatory system

[Term]
id: UBERON:0002342
name: neural crest
namespace: uberon
alt_id: UBERON:FMA_86666-MIAA_0000066-XAO_0000048-ZFA_0000045
def: "The neural crest, a transient component of the ectoderm, is located in between the neural tube and the epidermis (or the free margins of the neural folds) of an embryo during neural tube formation. Neural crest cells quickly migrate during or shortly after neurulation, an embryological event marked by neural tube closure." [Wikipedia:Neural_crest]
comment: Editor note: consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams). Taxon notes: A well developed neural crest population is present in lampreys (Horigome et al. 1999 ; Tomsa & Langeland, 1999) and gnathostomes. chordate fossils from the early Cambrian (Yunnanozoan and Haikouella) with apparent neural-crest derived structures (pharyngeal denticles and pharyngeal skeletons resembling the striped mucocartilage of the branchial bars in lamprey ammocoete larvae), suggests that neural crest arose very early in vertebrate evolution (Chen et al. 1999; Holland & Chen, 2001). The invertebrate chordates apparently lack defini- tive neural crest. One marker of migrating neural crest in some vertebrates, the antibody HNK1, does not recognize any cells in amphioxus embryos (Holland, unpublished). Even so, in both amphioxus and tunicates, cells at the edges of the neural plate and adjacent nonneural ectoderm share some properties of neural crest[PMID:11523831]. Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells.
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010578
xref: BTO:0001764
xref: EHDAA2:0004419
xref: FMA:86666
xref: GAID:1310
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray644.png/200px-Gray644.png
xref: MAT:0000066
xref: MESH:A.16.254.600
xref: MIAA:0000066
xref: ncithesaurus:Neural_Crest
xref: SCTID:361462002
xref: TAO:0000045
xref: VHOG:0000057
xref: XAO:0000048
xref: ZFA:0000045
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010316 ! germ layer / neural crest
relationship: develops_from UBERON:0003075 {source="BTO"} ! neural plate
relationship: develops_from UBERON:0005062 {source="PMID:11523831"} ! neural fold
relationship: existence_starts_during UBERON:0000110 {source="PMID:11523831"} ! neurula stage
relationship: part_of UBERON:0002346 {source="UBERONREF:0000002", source="XAO"} ! neurectoderm

[Term]
id: UBERON:0002343
name: abdomen musculature
namespace: uberon
alt_id: UBERON:FMA_86917-ZFA_0001327
def: "Set of all muscles in abdomen." [OBOL:automatic]
comment: note distinction between abdomen muscle and abdomen musculature
subset: vertebrate_core
synonym: "abdominal musculature" EXACT []
synonym: "muscle group of abdomen" EXACT [FMA:71294]
synonym: "muscles of abdomen" EXACT [FMA:71294]
synonym: "musculature of abdomen" EXACT []
synonym: "musculature of abdominal wall" EXACT [FMA:86917]
xref: FMA:71294
xref: FMA:86917
xref: TAO:0001327
xref: ZFA:0001327
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen

[Term]
id: UBERON:0002346
name: neurectoderm
namespace: uberon
alt_id: UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120
def: "Embryonic ectoderm that gives rise to nervous tissue." [Wikipedia:Neuroectoderm]
comment: Terminology notes: we prefer neurectoderm to neural ectoderm since placodal ectoderm is not classified here
subset: uberon_slim
subset: vertebrate_core
synonym: "neuaral ectoderm" RELATED []
synonym: "neural ectoderm" EXACT []
synonym: "neuroectoderm" EXACT []
synonym: "presumptive central nervous system" RELATED []
xref: AAO:0011074
xref: BILA:0000039
xref: EHDAA2:0001248
xref: EHDAA:1498
xref: EHDAA:255
xref: EMAPA:16073
xref: EV:0100004
xref: FBbt:00001061
xref: FMA:87657
xref: MAT:0000176
xref: MIAA:0000176
xref: ncithesaurus:Neuroectoderm
xref: TAO:0001120
xref: VHOG:0000150
xref: XAO:0000042
xref: ZFA:0001120
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000923 ! germ layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924 {source="UBERONREF:0000002"} ! ectoderm

[Term]
id: UBERON:0002347
name: thoracic vertebra
namespace: uberon
alt_id: UBERON:FMA_9139-MA_0000314
def: "In humans, the 12 thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. They are intermediate in size between those of the cervical and lumbar regions; they increase in size as one proceeds down the spine, the upper vertebrae being much smaller than those in the lower part of the region. They are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs. [WP,unvetted]." [Wikipedia:Thoracic_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal vertebra" EXACT []
synonym: "thorax vertebra" EXACT [OBOL:automatic]
synonym: "vertebra of thorax" EXACT [OBOL:automatic]
synonym: "vertebra thoracica" EXACT []
xref: EMAPA:18011
xref: FMA:9139
xref: GAID:244
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png
xref: MA:0000314
xref: MESH:A.02.835.232.834.892
xref: ncithesaurus:Thoracic_Vertebra
xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA
xref: SCTID:181821009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003827 ! thoracic segment bone
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0006073 ! thoracic region of vertebral column

[Term]
id: UBERON:0002349
name: myocardium
namespace: uberon
alt_id: UBERON:FMA_9462-MA_0000164-XAO_0000065-ZFA_0001319
def: "middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]." [Wikipedia:Myocardium]
comment: TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac muscle" RELATED [ZFA:0001319]
synonym: "heart muscle " RELATED [ZFA:0001319]
synonym: "heart myocardium" EXACT []
synonym: "muscle of heart" EXACT [FMA:9462]
xref: AAO:0010410
xref: BTO:0000901
xref: EFO:0000819
xref: EHDAA2:0004150
xref: EV:0100022
xref: FMA:9462
xref: GAID:173
xref: galen:Myocardium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Glanzstreifen.jpg/200px-Glanzstreifen.jpg
xref: MA:0000164
xref: MAT:0000453
xref: MESH:A.02.633.580
xref: ncithesaurus:Myocardium
xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw
xref: RETIRED_EHDAA2:0001220
xref: SCTID:362012001
xref: TAO:0001319
xref: VHOG:0000083
xref: XAO:0000065
xref: ZFA:0001319
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0000383 ! musculature of body
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002350
name: conducting system of heart
namespace: uberon
alt_id: UBERON:FMA_9476-ZFA_0005063
def: " The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO]" [GO:0003161]
comment: Editor notes: EHDAA2 divides the system from the tissue
subset: vertebrate_core
synonym: "cardiac conduction system" EXACT []
synonym: "cardiac impulse conducting system" EXACT [GO:0003161]
synonym: "cardionector" EXACT []
synonym: "central conduction system" RELATED []
synonym: "heart conduction system" EXACT [GO:0003161]
synonym: "impulse conducting system" EXACT [MA:0000094]
xref: EFO:0003909
xref: EHDAA2:0004185
xref: EV:0100025
xref: FMA:9476
xref: MA:0000094
xref: MESH:A.07.541.409
xref: SCTID:281489000
xref: TAO:0005063
xref: VHOG:0001271
xref: ZFA:0005063
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart
relationship: part_of UBERON:0002349 {source="FMA"} ! myocardium

[Term]
id: UBERON:0002351
name: sinoatrial node
namespace: uberon
alt_id: UBERON:FMA_9477-MA_0000097-ZFA_0005069
def: "The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node]
comment: WP:Heart states: "The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.". Note however that ZFA has SA node.
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac pacemaker" EXACT [FMA:9477]
synonym: "Koch's node" EXACT [FMA:9477]
synonym: "node of Keith-Flack" EXACT [FMA:9477]
synonym: "nodus sinuatrialis" EXACT [FMA:9477, FMA:TA]
synonym: "SA nodal muscle tissue" EXACT [FMA:9477]
synonym: "SA node" EXACT [FMA:9477]
synonym: "sinoatrial node" EXACT [FMA:9477]
synonym: "sinu-atrial node" EXACT [FMA:9477]
synonym: "sinuatrial nodal muscle tissue" EXACT [FMA:9477]
synonym: "sinuatrial node" EXACT [FMA:9477]
synonym: "sinus node" EXACT [FMA:9477]
synonym: "sinus node of Keith and Flack" EXACT [FMA:9477]
xref: BTO:0004358
xref: EHDAA2:0004184
xref: FMA:9477
xref: GAID:561
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Sinoatrial_node_low_mag.jpg/200px-Sinoatrial_node_low_mag.jpg
xref: MA:0000097
xref: MESH:A.07.541.409.819
xref: ncithesaurus:Sinoatrial_Node
xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g
xref: SCTID:277687007
xref: TAO:0005069
xref: ZFA:0005069
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
relationship: part_of UBERON:0002350 {source="ZFA"} ! conducting system of heart

[Term]
id: UBERON:0002352
name: atrioventricular node
namespace: uberon
alt_id: UBERON:FMA_9478-MA_0000095-ZFA_0005070
def: "Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle.[FMA]" [FMA:FMA, Wikipedia:Atrioventricular_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "aschoff-tawara node" EXACT []
synonym: "atrioventricular nodal muscle tissue" EXACT []
synonym: "av nodal muscle tissue" EXACT []
synonym: "av node" EXACT []
synonym: "node of tawara" EXACT []
xref: EFO:0000276
xref: EHDAA2:0004183
xref: FMA:9478
xref: GAID:558
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray501.png/200px-Gray501.png
xref: MA:0000095
xref: MAT:0000498
xref: MESH:A.07.541.409.147
xref: ncithesaurus:Atrioventricular_Node
xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g
xref: SCTID:277688002
xref: TAO:0005070
xref: VHOG:0001474
xref: ZFA:0005070
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
relationship: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002350 ! conducting system of heart

[Term]
id: UBERON:0002353
name: atrioventricular bundle
namespace: uberon
alt_id: UBERON:FMA_9484-MA_0002576
def: "Subdivision of conducting system of heart which consists of the atrial part and the ventricular part of the atrioventricular bundle and is the direct continuation of the atrioventricular node.[FMA]" [FMA:FMA, Wikipedia:Bundle_of_His]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrioventricular bundle muscle tissue" EXACT [FMA:9484]
synonym: "atrioventricular fasciculus" EXACT [FMA:9484]
synonym: "bundle of His" EXACT [FMA:9484]
synonym: "His bundle" EXACT []
xref: FMA:9484
xref: GAID:559
xref: galen:BundleOfHis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/ECG_Principle_fast.gif/200px-ECG_Principle_fast.gif
xref: MA:0002576
xref: MESH:A.07.541.409.273
xref: ncithesaurus:Atrioventricular_Bundle
xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g
xref: SCTID:362022007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
relationship: part_of UBERON:0002350 ! conducting system of heart
relationship: part_of UBERON:0004146 {source="GO"} ! His-Purkinje system

[Term]
id: UBERON:0002354
name: purkinje fiber
namespace: uberon
alt_id: UBERON:FMA_9492-MA_0000096
def: "Conducting tissue of heart which consists of Purkinje myocytes.[FMA]" [FMA:FMA, Wikipedia:Purkinje_fiber]
subset: uberon_slim
synonym: "myofibra conducens cardiacus" EXACT []
xref: FMA:9492
xref: GAID:560
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png
xref: MA:0000096
xref: MESH:A.07.541.409.683
xref: ncithesaurus:Purkinje_Fiber
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart
relationship: part_of UBERON:0002350 ! conducting system of heart

[Term]
id: UBERON:0002355
name: pelvis
namespace: uberon
alt_id: UBERON:FMA_9578-MA_0000030
def: "Subdivision of abdomen, which is demarcated from the abdomen proper by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the abdomen proper, it constitutes the abdomen[FMA]." [FMA:9578, Wikipedia:Pelvis]
comment: Note that MA and FMA differ in what they consider to be parts of the pelvis. MA includes ureter, urethra, urinary bladder, reproductive organs
subset: uberon_slim
synonym: "lesser pelvis" EXACT [FMA:9578]
synonym: "true pelvis" EXACT [FMA:9578]
xref: BTO:0001006
xref: EFO:0002805
xref: EV:0100012
xref: FMA:9578
xref: GAID:87
xref: galen:Pelvis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png
xref: MA:0000030
xref: MESH:A.01.673
xref: ncithesaurus:Pelvis
xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA
xref: SCTID:229765004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002417 ! abdominal segment of trunk

[Term]
id: UBERON:0002356
name: perineum
namespace: uberon
alt_id: UBERON:FMA_9579-MA_0002466
def: "Subdivision of trunk, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]." [FMA:9579, Wikipedia:Perineum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "perineal region" EXACT []
synonym: "regio perinealis" EXACT [FMA:9579, FMA:TA]
xref: EHDAA2:0004015
xref: EV:0100013
xref: FMA:9579
xref: GAID:90
xref: galen:Perineum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Gray406.png/200px-Gray406.png
xref: MA:0002466
xref: MESH:A.01.719
xref: ncithesaurus:Perineum
xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA
xref: SCTID:243990009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk

[Term]
id: UBERON:0002358
name: peritoneum
namespace: uberon
alt_id: UBERON:FMA_9584-XAO_0000139-ZFA_0005120
def: "A serous membrane that forms the lining of the abdominal cavity or the coelom — it covers most of the intra-abdominal (or coelomic) organs — in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]. The smooth transparent serous membrane that lines the cavity of the abdomen of a mammal and is folded inward over the abdominal and pelvic viscera[BTO]. The endothelial lining of the ABDOMINAL CAVITY. The parietal peritoneum covers the inside of the ABDOMINAL WALL and the visceral peritoneum covers the bowel, the MESENTERY, and certain of the organs. The portion that covers the bowel becomes the serosal layer of the bowel wall[GAID]." [Wikipedia:Peritoneum, ZFIN:curator]
comment: TODO - in ZFA is_a epithelium
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010814
xref: BTO:0001472
xref: EV:0100087
xref: FMA:9584
xref: GAID:18
xref: galen:Peritoneum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png
xref: MESH:A.01.047.025.600
xref: ncithesaurus:Peritoneum
xref: OpenCyc:Mx4rvjJ72ZwpEbGdrcN5Y29ycA
xref: TAO:0005120
xref: VHOG:0001257
xref: XAO:0000139
xref: ZFA:0005120
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000042 ! serous membrane
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0003684 ! abdominal cavity

[Term]
id: UBERON:0002359
name: fibrous pericardium
namespace: uberon
alt_id: UBERON:FMA_9586-MA_0002738
def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]" [FMA:FMA, Wikipedia:Fibrous_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "fibrous portion of pericardium" EXACT []
xref: EMAPA:19029
xref: FMA:9586
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002738
xref: SCTID:243953008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000094 ! membrane organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002407 ! pericardium

[Term]
id: UBERON:0002360
name: meninx
namespace: uberon
alt_id: UBERON:FMA_9589-MA_0001113
def: "Membrane organ that surrounds the brain and the spinal cord." [FMA:9589, http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx]
comment: Editor note: consider separate term for meninges aka collection of meninges. Note in EHDAA2 pia mater etc are part of the meninges. Also consider a new class for primary/primitive meninx. AO notes: Not consider part of the CNS/neuraxis in FMA. Taxon notes: Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx).
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "layer of meninges" EXACT []
synonym: "meningeal layer" EXACT []
xref: BTO:0000144
xref: EFO:0000584
xref: EFO:0000867
xref: EV:0100312
xref: FMA:9589
xref: GAID:687
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_meninges.jpg/200px-Illu_meninges.jpg
xref: MA:0001113
xref: MAT:0000113
xref: MESH:A.08.186.566
xref: ncithesaurus:Meninges
xref: NIF_GrossAnatomy:nlx_anat_090204
xref: OpenCyc:Mx4rwDOl8JwpEbGdrcN5Y29ycA
xref: TAO:0001355
xref: VHOG:0001295
xref: ZFA:0001355
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000094 {source="FMA"} ! membrane organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0010743 ! meningeal cluster

[Term]
id: UBERON:0002363
name: dura mater
namespace: uberon
alt_id: UBERON:FMA_9592-MA_0001115
def: "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid." [Wikipedia:Dura_mater]
comment: Function notes: capable of inducing chondrogenesis - requires contact with an epithelium - PMID:16496288. AO notes: in ncit this is divided into periosteal layer and meningeal layer
subset: organ_slim
subset: uberon_slim
synonym: "dura" RELATED [BTO:0001637]
synonym: "dura mater of neuraxis" EXACT []
synonym: "pachymeninges" EXACT [NIF_GrossAnatomy:nlx_anat_090206]
xref: BTO:0001637
xref: EMAPA:17776
xref: EV:0100313
xref: FMA:9592
xref: GAID:691
xref: MA:0001115
xref: MESH:A.08.186.566.395
xref: ncithesaurus:Dura_Mater
xref: NIF_GrossAnatomy:nlx_anat_090206
xref: OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA
xref: SCTID:362301008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002360 ! meninx
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: continuous_with UBERON:0001773 {source="PMID:16496288"} ! sclera
relationship: develops_from UBERON:0007647 ! ectomeninx
relationship: develops_from UBERON:0010115 {evidence="definitional"} ! future dura mater

[Term]
id: UBERON:0002364
name: tympanic membrane
namespace: uberon
alt_id: UBERON:FMA_9595-MA_0000257
def: "A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [PMID:11237469, Wikipedia:Tympanic_membrane]
comment: most AOs consider this part of the middle ear, so we go with this and place it in the middle ear as a border to the external, although it could be considered to overlap the external ear in that it has an EAM layer as part - for this reason we do not consider middle and external ear to be spatially disjoint. Development notes: The tympanic membrane (TM) has three layers, two epithelia provided by the external acoustic meatus (EAM) and the MEC, derived respectively from the first pharyngeal cleft and pouch, and a mesenchymally derived fibrous stratum[PMID:11237469]
subset: organ_slim
subset: uberon_slim
synonym: "ear drum" EXACT []
synonym: "eardrum" EXACT []
synonym: "lateral wall of tympanic cavity" EXACT []
synonym: "membranous wall of tympanic cavity" EXACT []
synonym: "myrinx" EXACT []
synonym: "paries membranaceus cavi tympani" EXACT [FMA:9595, FMA:TA]
synonym: "Rivinus' membrane" EXACT []
synonym: "tympanum" RELATED [Wikipedia:Tympanic_membrane]
xref: EV:0100358
xref: FMA:9595
xref: GAID:870
xref: MA:0000257
xref: MESH:A.09.246.397.873
xref: ncithesaurus:Tympanic_Membrane
xref: SCTID:181180005
xref: VHOG:0001146
xref: XAO:0000212
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000094 {source="FMA"} ! membrane organ
relationship: adjacent_to UBERON:0004114 {source="cjm"} ! tympanic cavity
relationship: develops_from UBERON:0009213 {source="Wikipedia"} ! pharyngeal membrane of 1st arch
relationship: has_part UBERON:0005042 ! inner epithelial layer of tympanic membrane
relationship: has_part UBERON:0010069 ! outer epithelial layer of tympanic membrane
relationship: has_part UBERON:0010070 ! intermediate layer of tympanic membrane
relationship: overlaps UBERON:0001352 ! external acoustic meatus
relationship: overlaps UBERON:0001691 {source="cjm"} ! external ear
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear

[Term]
id: UBERON:0002365
name: exocrine gland
namespace: uberon
alt_id: UBERON:FMA_9596-MA_0002564
def: "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas" [Wikipedia:Exocrine_gland]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "ducted gland" EXACT []
synonym: "exocrine gland" EXACT []
synonym: "glandula exocrina" EXACT []
xref: AEO:0000097
xref: BTO:0000765
xref: EHDAA2:0003097
xref: FMA:9596
xref: GAID:34
xref: MA:0002564
xref: MESH:A.10.336
xref: ncithesaurus:Exocrine_Gland
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002530 ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002330 ! exocrine system
relationship: part_of UBERON:0002330 ! exocrine system

[Term]
id: UBERON:0002367
name: prostate gland
namespace: uberon
alt_id: UBERON:FMA_9600-MA_0000404-MIAA_0000078
def: "The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid." [GO:0030850, Wikipedia:Prostate]
comment: TODO - FMA treats the gland as part of the prostate - see also FMA:74119.
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "male prostate" EXACT [PMID:10668204]
synonym: "prostate" EXACT []
xref: BTO:0001129
xref: EFO:0000858
xref: EMAPA:19287
xref: EV:0100104
xref: FMA:9600
xref: GAID:392
xref: galen:ProstateGland
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Prostatelead.jpg/200px-Prostatelead.jpg
xref: MA:0000404
xref: MAT:0000078
xref: MESH:A.05.360.444.575
xref: MIAA:0000078
xref: ncithesaurus:Prostate_Gland
xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA
xref: SCTID:181422007
xref: VHOG:0001261
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010147 ! male accessory sex gland
relationship: develops_from UBERON:0003820 ! prostate bud

[Term]
id: UBERON:0002368
name: endocrine gland
namespace: uberon
alt_id: UBERON:FMA_9602-MA_0002563
def: "Endocrine glands are glands of the endocrine system that secrete their products, hormones, directly into the blood rather than through a duct. The main endocrine glands include the pituitary gland, pancreas, ovaries, testes, thyroid gland, and adrenal glands. The hypothalamus is a neuroendocrine organ. Other organs which are not so well known for their endocrine activity include the stomach, which produces such hormones as ghrelin[WP]." [Wikipedia:Endocrine_gland]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "ductless gland" EXACT []
synonym: "glandula endocrina" EXACT []
xref: AEO:0000098
xref: BTO:0001488
xref: EHDAA2:0003098
xref: FMA:9602
xref: GAID:335
xref: MA:0002563
xref: MESH:A.06.407
xref: ncithesaurus:Endocrine_Gland
xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA
xref: SCTID:40818001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002530 ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0000949 ! endocrine system

[Term]
id: UBERON:0002371
name: bone marrow
namespace: uberon
alt_id: UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669
def: "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]." [Wikipedia:Bone_marrow]
comment: TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system. also consider adding as subclass of zone of bone organ for consistency with FMA. See also: Leydig and epigonal organs
subset: uberon_slim
synonym: "anterior kidney" RELATED []
synonym: "head kidney" BROAD []
synonym: "kidney marrow" RELATED []
synonym: "medulla of bone" RELATED [BTO:0000141]
synonym: "medulla ossea" EXACT []
synonym: "medulla ossium" RELATED [BTO:0000141]
xref: AAO:0011007
xref: BTO:0000141
xref: BTO:0000829
xref: EFO:0000868
xref: EV:0100046
xref: FMA:9608
xref: GAID:1287
xref: galen:BoneMarrow
xref: MA:0000134
xref: MAT:0000084
xref: MESH:A.15.382.216
xref: MIAA:0000084
xref: ncithesaurus:Bone_Marrow
xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA
xref: SCTID:421320006
xref: VHOG:0001218
xref: XAO:0000123
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001474 ! bone
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system

[Term]
id: UBERON:0002374
name: metacarpal bone
namespace: uberon
alt_id: UBERON:FMA_9612-MA_0000302
def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpal_bone]
subset: uberon_slim
synonym: "metacarpal" EXACT []
xref: EFO:0003886
xref: FMA:9612
xref: galen:Metacarpal
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png
xref: MA:0000302
xref: ncithesaurus:Metacarpal_Bone
xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA
xref: SCTID:181977005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 {source="FMA"} ! long bone
is_a: UBERON:0003607 ! forelimb long bone
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
is_a: UBERON:0005897 ! hand bone
intersection_of: UBERON:0003821 ! metacarpal/metatarsal bone
intersection_of: part_of UBERON:0004453 ! metacarpus region
relationship: part_of UBERON:0004453 ! metacarpus region
relationship: part_of UBERON:0010544 ! metacarpal skeleton

[Term]
id: UBERON:0002375
name: cricoid cartilage
namespace: uberon
alt_id: UBERON:FMA_9615-MA_0001762
def: "The cricoid cartilage, or simply cricoid (from the Greek krikoeides meaning 'ring-shaped'), is the only complete ring of cartilage around the trachea. [WP,unvetted]." [Wikipedia:Cricoid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilaginis cricoideae" RELATED PLURAL [Wikipedia:Cricoid_cartilage]
synonym: "cartilago cricoidea" RELATED PLURAL []
synonym: "cartilago cricoidea" RELATED [AAO:0000675]
synonym: "cartilago cricotrachealis" RELATED [AAO:0000675]
synonym: "cricoid" RELATED [Wikipedia:Cricoid_cartilage]
synonym: "cricoidea" RELATED [Wikipedia:Cricoid_cartilage]
synonym: "innominate cartilage" RELATED [VHOG:0001308]
synonym: "krykoid cartilage" RELATED [Wikipedia:Cricoid_cartilage]
xref: AAO:0000675
xref: EHDAA2:0000326
xref: EHDAA:9393
xref: EMAPA:18696
xref: FMA:9615
xref: GAID:110
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/Gray1194.png/200px-Gray1194.png
xref: MA:0001762
xref: MESH:A.02.165.507.211
xref: ncithesaurus:Cricoid_Cartilage
xref: SCTID:263484006
xref: VHOG:0001308
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001739 {source="MA"} ! laryngeal cartilage
is_a: UBERON:0001994 {source="Wikipedia"} ! hyaline cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
relationship: develops_from UBERON:0010214 {source="EHDAA2"} ! cricoid pre-cartilage condensation

[Term]
id: UBERON:0002376
name: muscle of head
namespace: uberon
alt_id: UBERON:FMA_9616-MA_0000578-ZFA_0000328
def: "Muscle organ which is a part of the head. Examples: masseter, orbicularis oculi.[FMA]" [FMA:9616]
comment: TODO - check ZFA
subset: uberon_slim
subset: vertebrate_core
synonym: "adult head muscle organ" EXACT [OBOL:automatic]
synonym: "cephalic muscle" EXACT [ZFA:0001652]
synonym: "cephalic musculature" EXACT []
synonym: "cranial muscle " RELATED [ZFA:0001652]
synonym: "head muscle" EXACT []
synonym: "head muscle organ" EXACT [OBOL:automatic]
synonym: "head muscles" RELATED []
synonym: "muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "muscle organ of head" EXACT [OBOL:automatic]
synonym: "musculus caput" EXACT []
xref: AAO:0000107
xref: BTO:0000021
xref: EFO:0003524
xref: EHDAA2:0000322
xref: EMAPA:18171
xref: FMA:9616
xref: MA:0000578
xref: TAO:0000328
xref: ZFA:0000328
xref: ZFA:0001652
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010959 ! craniocervical muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000033 ! head
relationship: develops_from UBERON:0006904 {source="EHDAA2-abduced"} ! head mesenchyme from mesoderm
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0002377
name: muscle of neck
namespace: uberon
alt_id: UBERON:FMA_9617-MA_0000587
def: "Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle.[FMA]" [FMA:9617]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscle organ of neck" EXACT [OBOL:automatic]
synonym: "muscle organ of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) muscle organ" EXACT [OBOL:automatic]
synonym: "neck muscle" EXACT []
synonym: "neck muscle organ" EXACT [OBOL:automatic]
xref: FMA:9617
xref: GAID:149
xref: MA:0000587
xref: MESH:A.02.633.567.650
xref: ncithesaurus:Neck_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010959 ! craniocervical muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck

[Term]
id: UBERON:0002378
name: muscle of abdomen
namespace: uberon
alt_id: UBERON:FMA_9620-MA_0000520
def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle]
subset: uberon_slim
synonym: "abdomen muscle" EXACT []
synonym: "abdomen muscle organ" EXACT [OBOL:automatic]
synonym: "abdominal muscle" EXACT []
synonym: "abdominal wall muscle" EXACT []
synonym: "muscle organ of abdomen" EXACT [OBOL:automatic]
xref: BTO:0001261
xref: FMA:9620
xref: GAID:89
xref: MA:0000520
xref: MESH:A.02.633.567.050
xref: ncithesaurus:Abdominal_Muscle
xref: OpenCyc:Mx4rvlygNJwpEbGdrcN5Y29ycA
xref: SCTID:361352008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003833 ! abdominal segment muscle
is_a: UBERON:0005172 ! abdomen organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0003697 ! abdominal wall

[Term]
id: UBERON:0002379
name: perineal muscle
namespace: uberon
alt_id: UBERON:FMA_9623-MA_0000538
def: "A muscle organ that is part of a perineum [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "muscle of perineum" EXACT []
synonym: "muscle organ of perineal region" EXACT [OBOL:automatic]
synonym: "muscle organ of perineum" EXACT [OBOL:automatic]
synonym: "perineal region muscle organ" EXACT [OBOL:automatic]
synonym: "perineum muscle organ" EXACT [OBOL:automatic]
xref: EMAPA:18923
xref: FMA:9623
xref: MA:0000538
xref: ncithesaurus:Perineal_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001325 ! muscle of pelvis
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002356 ! perineum
relationship: part_of UBERON:0002356 ! perineum

[Term]
id: UBERON:0002380
name: trapezius
namespace: uberon
alt_id: UBERON:FMA_9626-MA_0002398
def: "In human anatomy, the trapezius is a large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]." [Wikipedia:Trapezius]
subset: uberon_slim
synonym: "trapezius muscle" EXACT []
xref: EMAPA:18183
xref: FMA:9626
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Trapezius.png/200px-Trapezius.png
xref: MA:0002398
xref: ncithesaurus:Trapezius_Muscle
xref: SCTID:181740005
xref: VHOG:0000834
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0010955 ! trapezius pre-muscle mass

[Term]
id: UBERON:0002381
name: pectoralis major
namespace: uberon
alt_id: UBERON:FMA_9627-MA_0002354
def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [Wikipedia:Pectoralis_major]
subset: organ_slim
subset: uberon_slim
synonym: "pectoralis major muscle" EXACT []
synonym: "pectoralis major muscle structure" EXACT [SCTID:60005003]
xref: EHDAA2:0001424
xref: EHDAA:8311
xref: EMAPA:18179
xref: FMA:9627
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png
xref: MA:0002354
xref: ncithesaurus:Pectoralis_Major
xref: SCTID:60005003
xref: VHOG:0000895
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001495 ! pectoral muscle

[Term]
id: UBERON:0002382
name: rectus abdominis
namespace: uberon
alt_id: UBERON:FMA_9628-MA_0002364
def: "The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the human abdomen (and in some other animals). There are two parallel muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (5–7) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, or—even rarer—asymmetrically arranged segments. All these variations are functionally equivalent. [WP,unvetted]." [Wikipedia:Rectus_abdominis]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
xref: EHDAA2:0001595
xref: EHDAA:8252
xref: EMAPA:18164
xref: FMA:9628
xref: GAID:142
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/95/Rectus_abdominis.png/200px-Rectus_abdominis.png
xref: MA:0002364
xref: MESH:A.02.633.567.050.800
xref: ncithesaurus:Rectus_Abdominis
xref: VHOG:0000863
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002378 ! muscle of abdomen

[Term]
id: UBERON:0002383
name: supraspinatus
namespace: uberon
alt_id: UBERON:FMA_9629-MA_0002389
def: "The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]." [Wikipedia:Supraspinatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001967
xref: EHDAA:8319
xref: EMAPA:18182
xref: FMA:9629
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002389
xref: ncithesaurus:Supraspinatus
xref: SCTID:181626001
xref: VHOG:0000848
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder

[Term]
id: UBERON:0002384
name: connective tissue
namespace: uberon
alt_id: UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017
def: "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibres and ground substance." [VAO:0000017]
subset: uberon_slim
subset: vertebrate_core
synonym: "Bindegewebe" RELATED [BTO:0000421]
synonym: "fascia" RELATED []
synonym: "portion of connective tissue" EXACT [FMA:9640]
synonym: "textus connectivus" EXACT []
xref: AAO:0000098
xref: BTO:0000421
xref: EFO:0000952
xref: EV:0100150
xref: FMA:9640
xref: GAID:100
xref: galen:ConnectiveTissue
xref: MA:0000011
xref: MAT:0000301
xref: MESH:A.02.340
xref: MIAA:0000301
xref: ncithesaurus:Connective_Tissue
xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA
xref: SCTID:361919005
xref: TAO:0001641
xref: VAO:0000017
xref: XAO:0001017
xref: ZFA:0001632
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue

[Term]
id: UBERON:0002385
name: muscle tissue
namespace: uberon
alt_id: UBERON:FMA_9641-MA_0002437
def: "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue]
comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach.
subset: uberon_slim
synonym: "muscle tissue" EXACT SENSU []
synonym: "portion of muscle tissue" EXACT [FMA:9641]
synonym: "textus muscularis" EXACT []
xref: AAO:0000306
xref: AEO:0000122
xref: EHDAA2:0003122
xref: FMA:9641
xref: galen:MuscleTissue
xref: MA:0002437
xref: MESH:A.02.633
xref: ncithesaurus:Muscle_Tissue
xref: SCTID:91727004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0003714
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0003714 ! neural tissue
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000383 ! musculature of body
relationship: part_of UBERON:0001015 ! musculature

[Term]
id: UBERON:0002386
name: forelimb zeugopod
namespace: uberon
alt_id: UBERON:FMA_9663-MA_0000034
def: "distal region of the upper limb, between the elbow and the wrist." [Wikipedia:Forearm]
comment: Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here
subset: uberon_slim
synonym: "antebrachial region" EXACT []
synonym: "antebrachium" EXACT [Wikipedia:Forearm]
synonym: "antebrachium" EXACT [VAO:0005058]
synonym: "arm middle limb segment" EXACT [OBOL:automatic]
synonym: "arm zeugopod" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "fore epipodium" RELATED []
synonym: "forearm" EXACT []
synonym: "forelimb epipodium" EXACT []
synonym: "forelimb zeugopodium" EXACT []
synonym: "intermediate segment of free upper limb" EXACT []
synonym: "lower arm" EXACT []
synonym: "lower segment of arm" EXACT []
synonym: "middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "regio antebrachialis" EXACT [FMA:9663, FMA:TA]
synonym: "zeugopod of arm" EXACT []
synonym: "zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "zeugopod of forelimb" EXACT []
synonym: "zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: BTO:0001447
xref: EFO:0003053
xref: EHDAA2:0000553
xref: EHDAA:4172
xref: EHDAA:6218
xref: EMAPA:17417
xref: FMA:9663
xref: GAID:55
xref: galen:Forearm
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png
xref: MA:0000034
xref: MESH:A.01.378.800.585
xref: ncithesaurus:Forearm
xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA
xref: SCTID:362741001
xref: VAO:0005058
xref: VHOG:0000341
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002471 ! zeugopod
is_a: UBERON:0008785 ! upper limb segment
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0001460 {source="MA"} ! arm
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0002387
name: foot
namespace: uberon
alt_id: UBERON:FMA_9664-MA_0000044
def: "distal portion of the hind limb, including tarsal region, metatarsal region and digits." [Wikipedia:Foot, Wikipedia:Pes_(anatomy)]
comment: Editors note: consider renaming using less human-centric terminology
subset: uberon_slim
synonym: "autopod of hind limb" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "autopod of inferior member" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb autopod" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "hind paw" NARROW SENSU [EMAPA:17428, OBOL:automatic]
synonym: "hind-paw" NARROW SENSU [EMAPA:17428]
synonym: "hindlimb autopod" EXACT [OBOL:automatic]
synonym: "hindlimb autopodium" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "inferior member autopod" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "lower extremity autopod" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "pes" EXACT [UBERON:cjm]
synonym: "terminal segment of free lower limb" EXACT []
xref: BTO:0000476
xref: EFO:0003065
xref: EHDAA2:0000546
xref: EMAPA:17459
xref: FMA:9664
xref: GAID:40
xref: galen:Foot
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Male_Right_Foot_1.jpg/200px-Male_Right_Foot_1.jpg
xref: MA:0000044
xref: MESH:A.01.378.610.250
xref: ncithesaurus:Foot
xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA
xref: SCTID:302545001
xref: VHOG:0000350
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002470 ! autopod region
is_a: UBERON:0008784 ! lower limb segment
intersection_of: UBERON:0002470 ! autopod region
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: develops_from UBERON:0006871 ! footplate
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0002389
name: hand digit
namespace: uberon
alt_id: UBERON:0000028
alt_id: UBERON:FMA_9666-MA_0000041
def: "Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger [FMA]. A digit found on the hands of humans and other primates used for manipulation and sensation [Wikipedia]." [Wikipedia:Finger]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "digit of hand" EXACT []
synonym: "digitus manus" EXACT []
synonym: "finger" EXACT [FMA:9666]
synonym: "fore digit" EXACT [AAO:0000857, XAO:0003036]
synonym: "forelimb digit" EXACT []
xref: AAO:0000857
xref: BTO:0004669
xref: EHDAA2:0000404
xref: FMA:9666
xref: GAID:57
xref: galen:Finger
xref: MA:0000041
xref: MESH:A.01.378.800.667.430
xref: ncithesaurus:Finger
xref: NIF_GrossAnatomy:nlx_anat_20090602
xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA
xref: SCTID:283992002
xref: XAO:0003036
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002544 ! digit
is_a: UBERON:0008785 ! upper limb segment
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0002390
name: hematopoietic system
namespace: uberon
alt_id: UBERON:FMA_9667-MA_0002434-MIAA_0000022-XAO_0000122-ZFA_0005023
def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "Blutbildungssystem" RELATED [BTO:0000570]
synonym: "haematological system" EXACT []
synonym: "haematopoietic system" RELATED []
synonym: "haemopoietic system" EXACT []
synonym: "hematological system" RELATED []
synonym: "hematolymphoid system" RELATED []
synonym: "hemopoietic system" RELATED []
synonym: "organa haemopoietica" EXACT []
xref: AAO:0011002
xref: BTO:0000570
xref: EFO:0000798
xref: EV:0100045
xref: FMA:9667
xref: GAID:1008
xref: MA:0002434
xref: MAT:0000022
xref: MESH:A.15.378
xref: MIAA:0000022
xref: ncithesaurus:Hematopoietic_System
xref: SCTID:362587009
xref: TAO:0005023
xref: VHOG:0001624
xref: XAO:0000122
xref: ZFA:0005023
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0003061 {evidence="definitional"} ! blood island
relationship: part_of UBERON:0002193 ! hemolymphoid system

[Term]
id: UBERON:0002391
name: lymph
namespace: uberon
alt_id: UBERON:FMA_9671-MA_0002520-MIAA_0000055
def: "Transudate contained in the lumen of lymphatic vessel[FMA]. Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system[WP]." [FMA:9671, Wikipedia:Lymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000855
xref: EFO:0000871
xref: ENVO:02000041
xref: EV:0100049
xref: FMA:9671
xref: GAID:1186
xref: galen:Lymph
xref: MA:0002520
xref: MAT:0000055
xref: MESH:A.12.207.630
xref: MIAA:0000055
xref: ncithesaurus:Lymph
xref: OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: develops_from UBERON:0000913 ! interstitial fluid

[Term]
id: UBERON:0002393
name: pharyngotympanic tube
namespace: uberon
alt_id: UBERON:FMA_9705-MA_0000255-XAO_0000213
def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]" [FMA:FMA, Wikipedia:Pharyngotympanic_tube]
comment: Editor notes: we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship
subset: organ_slim
subset: uberon_slim
synonym: "auditory tube" EXACT []
synonym: "eustachian tube" RELATED []
synonym: "internal auditory tube" EXACT []
synonym: "tuba auditiva" EXACT [FMA:9705, FMA:TA]
synonym: "tuba auditoria" EXACT [FMA:9705, FMA:TA]
xref: AAO:0000146
xref: EMAPA:17601
xref: EV:0100359
xref: FMA:9705
xref: GAID:869
xref: MA:0000255
xref: ncithesaurus:Eustachian_Tube
xref: VHOG:0001145
xref: XAO:0000213
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 {source="FMA"} ! organ
relationship: has_developmental_contribution_from UBERON:0010020 {source="UBERON:0010062"} ! tubotympanic recess epithelium
relationship: has_part UBERON:0010062 ! pharyngotympanic tube epithelium
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0002394
name: bile duct
namespace: uberon
alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
comment: The path is as follows: Bile canaliculi → Canals of Hering → interlobular bile ducts → intrahepatic bile ducts → left and right hepatic ducts merge to form → common hepatic duct exits liver and joins → cystic duct (from gall bladder) forming → common bile duct → joins with pancreatic duct → forming ampulla of Vater → enters duodenum [WP]
subset: uberon_slim
synonym: "gall duct" RELATED [BTO:0000122]
synonym: "hepatic duct" RELATED []
xref: AAO:0011019
xref: BTO:0000122
xref: EHDAA2:0000741
xref: EV:0100091
xref: FMA:9706
xref: GAID:280
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000354
xref: MESH:A.03.159.183
xref: ncithesaurus:Bile_Duct
xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
xref: SCTID:276157007
xref: VHOG:0000212
xref: XAO:0000134
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000058 ! duct
intersection_of: channel_for UBERON:0001970 ! bile
relationship: channel_for UBERON:0001970 ! bile
relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum
relationship: part_of UBERON:0001173 {source="MA"} ! biliary tree
relationship: part_of UBERON:0002294 ! biliary system

[Term]
id: UBERON:0002395
name: talus
namespace: uberon
alt_id: UBERON:FMA_9708-MA_0001351
def: "The talus bone or astragalus is a bone in the tarsus of the foot that forms the lower part of the ankle joint through its articulations with the lateral and medial malleoli of the two bones of the lower leg, the tibia and fibula. Within the tarsus, it articulates with the calcaneus below and navicular in front. Through these articulations, it transmits the entire weight of the body to the foot. The second largest of the tarsal bones, it is also one of the bones in the human body with the highest percentage of its surface area covered by articular cartilage. Additionally, it is also unique in that it has a retrograde blood supply, i.e. arterial blood enters the bone at the distal end." [Wikipedia:Talus_bone]
comment: Taxon notes: The talus is apparently derived from the fusion of three separate bones in the feet of primitive amphibians; the tibiale, articulating with tibia, the intermedium, between the bases of the tibia and fibula, and the fourth centrale, lying in the mid-part of the tarsus. These bones are still partially separate in modern amphibians, which therefore do not have a true talus. The talus forms a considerably more flexible joint in mammals than it does in reptiles. This reaches its greatest extent in artiodactyls, where the distal surface of the bone has a smooth keel to allow greater freedom of movement of the foot, and thus increase running speed[WP]
subset: uberon_slim
synonym: "astragaloid bone" RELATED [BTO:0002354]
synonym: "astragalus" RELATED [MA:000135, Wikipedia:Talus_bone]
synonym: "astragalus bone" RELATED [Wikipedia:Talus_bone]
synonym: "os tarsi tibiale" RELATED [BTO:0002354]
synonym: "os trigonum" RELATED [Wikipedia:Talus_bone]
xref: BTO:0002354
xref: EMAPA:18503
xref: EMAPA:19135
xref: FMA:9708
xref: GAID:196
xref: galen:Talus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/250px-Subtalar_Joint.PNG
xref: MA:0001351
xref: MESH:A.02.835.232.300.710.780
xref: ncithesaurus:Talus
xref: SCTID:182098005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001447 ! tarsal bone

[Term]
id: UBERON:0002396
name: vomer
namespace: uberon
alt_id: UBERON:FMA_9710-MA_0001496
def: "The vomer is one of the unpaired facial bones of the skull. It is located in the midsagittal line, and articulates with the sphenoid, the ethmoid, the left and right palatine bones, and the left and right maxillary bones. [WP,unvetted]." [Wikipedia:Vomer]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "vomer bone" EXACT []
xref: AAO:0000633
xref: FMA:9710
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0001496
xref: ncithesaurus:Vomer
xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA
xref: SCTID:272678009
xref: TAO:0000308
xref: ZFA:0000308
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0002397
name: maxilla
namespace: uberon
alt_id: UBERON:FMA_9711-MA_0001491-ZFA_0000270
def: "." [Wikipedia:Maxilla]
subset: uberon_slim
subset: vertebrate_core
synonym: "maxillae" RELATED []
synonym: "upper jaw bone" EXACT []
xref: AAO:0000285
xref: EHDAA2:0001068
xref: EHDAA:8043
xref: EMAPA:17639
xref: EMAPA:17928
xref: FMA:9711
xref: GAID:220
xref: galen:Maxilla
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png
xref: MA:0001491
xref: MESH:A.02.835.232.781.324.502.645
xref: ncithesaurus:Maxilla
xref: SCTID:181813003
xref: TAO:0000270
xref: VAO:0000207
xref: VHOG:0001021
xref: ZFA:0000270
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
is_a: UBERON:0008907 {source="VAO"} ! dermal bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
intersection_of: UBERON:0001474 ! bone
intersection_of: adjacent_to UBERON:0002244 ! premaxilla
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: adjacent_to UBERON:0002244 ! premaxilla
relationship: develops_from UBERON:0004362 {source="Wikipedia"} ! mandibular arch
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0002398
name: hand
namespace: uberon
alt_id: UBERON:FMA_9712-MA_0000037
def: "distal segment of the fore limb, including carpal region, metacarpal region and digits." [Wikipedia:Hand, Wikipedia:Manus_(anatomy)]
comment: Usage notes: like all limb segments, this class encompasses both the unformed hand region of the embryo to the fully formed structure complete with skeleton
subset: uberon_slim
synonym: "arm autopod" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "autopod of arm" EXACT [OBOL:automatic]
synonym: "autopod of brachial region" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region autopod" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "fore paw" NARROW SENSU [EMAPA:17428, OBOL:automatic]
synonym: "fore-paw" NARROW SENSU [EMAPA:17428]
synonym: "forelimb autopod" EXACT [OBOL:automatic]
synonym: "forelimb autopodium" EXACT [OBOL:automatic]
synonym: "hand region" EXACT [EHDAA2:0000728]
synonym: "manus" RELATED [UBERON:cjm]
synonym: "proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb" EXACT []
xref: AAO:0010803
xref: BTO:0004668
xref: EHDAA2:0000728
xref: EMAPA:17428
xref: FMA:9712
xref: GAID:56
xref: galen:Hand
xref: MA:0000037
xref: MESH:A.01.378.800.667
xref: ncithesaurus:Hand
xref: NIF_GrossAnatomy:nlx_anat_20090603
xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA
xref: SCTID:302539009
xref: VHOG:0000344
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002470 ! autopod region
is_a: UBERON:0008785 ! upper limb segment
intersection_of: UBERON:0002470 ! autopod region
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: develops_from UBERON:0006875 ! handplate
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0002403
name: internal intercostal muscle
namespace: uberon
alt_id: UBERON:FMA_9757-MA_0002326
def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Internal_intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intercostal muscle internal layer" RELATED []
synonym: "intercostales internus" EXACT []
xref: EHDAA2:0000875
xref: FMA:9757
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002326
xref: ncithesaurus:Internal_Intercostal_Muscle
xref: OpenCyc:Mx4rvlj6HZwpEbGdrcN5Y29ycA
xref: SCTID:244890001
xref: VHOG:0000905
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001111 ! intercostal muscle
relationship: develops_from UBERON:0010981 {source="EHDAA2"} ! internal intercostal pre-muscle mass

[Term]
id: UBERON:0002404
name: transversus thoracis
namespace: uberon
alt_id: UBERON:FMA_9760-MA_0002397
def: "The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]." [Wikipedia:Transversus_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
xref: EMAPA:19267
xref: FMA:9760
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Transversus_thoracis.png/200px-Transversus_thoracis.png
xref: MA:0002397
xref: ncithesaurus:Transversus_Thoracis
xref: SCTID:244933000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002426 ! chest muscle

[Term]
id: UBERON:0002405
name: immune system
namespace: uberon
alt_id: UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159
def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0011003
xref: BILA:0000104
xref: FMA:9825
xref: GAID:328
xref: MA:0002711
xref: MESH:A.15.382
xref: ncithesaurus:Immune_System
xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA
xref: SCTID:362590003
xref: TAO:0001159
xref: VHOG:0001247
xref: XAO:0003152
xref: ZFA:0001159
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0002407
name: pericardium
namespace: uberon
alt_id: UBERON:FMA_9869-MA_0000099
def: "The outer membrane/wall of the developing heart, surrounding the myocardium. Peritoneum that surrounds the heart.[AAO]" [AAO:0010817, Wikipedia:Pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010817
xref: BTO:0000717
xref: EFO:0000820
xref: EHDAA:5376
xref: EMAPA:17174
xref: EV:0100023
xref: FMA:9869
xref: GAID:569
xref: galen:Pericardium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: MA:0000099
xref: MAT:0000454
xref: MESH:A.07.541.795
xref: ncithesaurus:Pericardium
xref: OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001443
xref: SCTID:181295003
xref: TAO:0000054
xref: VHOG:0001280
xref: XAO:0004182
xref: ZFA:0000054
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 {source="GO"} ! epithelium
is_a: UBERON:0004457 ! cavity lining
is_a: UBERON:0005983 ! heart layer
relationship: adjacent_to UBERON:0002349 ! myocardium
relationship: part_of UBERON:0000948 {source="XAO"} ! heart

[Term]
id: UBERON:0002411
name: clitoris
namespace: uberon
alt_id: UBERON:FMA_9909-MA_0000382
def: "The clitoris is a sexual organ that is present only in female mammals. In humans, the visible button-like portion is located near the anterior junction of the labia minora, above the opening of the urethra and vagina. Unlike the penis, which is homologous to the clitoris, the clitoris does not contain the distal portion of the urethra. The only known exception to this is in the Spotted Hyena. In this species, the urogenital system is unique in that the female urinates, mates and gives birth via an enlarged, erectile clitoris, known as a pseudo-penis. In humans, the clitoris is the most sensitive erogenous zone of a woman, the stimulation of which may produce sexual excitement and clitoral erection; its continuing stimulation may produce sexual pleasure in the woman and orgasm. [WP,unvetted]." [Wikipedia:Clitoris]
subset: organ_slim
subset: uberon_slim
xref: BTO:0002020
xref: EHDAA2:0000255
xref: EHDAA:9360
xref: EMAPA:30819
xref: FMA:9909
xref: GAID:385
xref: galen:Clitoris
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Clitoris_anatomy_labeled-en.svg/200px-Clitoris_anatomy_labeled-en.svg.png
xref: MA:0000382
xref: MESH:A.05.360.319.887.436
xref: ncithesaurus:Clitoris
xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA
xref: SCTID:181442003
xref: VHOG:0000700
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 {source="Wikipedia"} ! organ
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_from UBERON:0005876 {source="EHDAA2", source="Wikipedia"} ! genital tubercle
relationship: part_of UBERON:0000997 {source="MA"} ! mammalian vulva

[Term]
id: UBERON:0002412
name: vertebra
namespace: uberon
alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189
def: "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator]
comment: Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0000691
xref: EFO:0001371
xref: FMA:9914
xref: galen:Vertebra
xref: MA:0000309
xref: ncithesaurus:Vertebra
xref: OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA
xref: SCTID:181817002
xref: TAO:0001189
xref: VHOG:0001143
xref: XAO:0004019
xref: ZFA:0001189
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0002413
name: cervical vertebra
namespace: uberon
alt_id: UBERON:FMA_9915-MA_0000311-XAO_0003076
def: "A vertebra immediately inferior to the skull[WP]." [Wikipedia:Cervical_vertebra]
comment: In some species, some parts of the skull may be composed of vertebra-like elements, e.g. the occipital bone in humans is composed of four vertebra-like segments. In many vertebrate species, cervical vertebrae are variable in number; however, almost all mammals have seven (including those with very short necks relative to body size, such as elephants or whales, and those with very long necks, such as giraffes). The few exceptions include the manatee and the sloths, of which the two-toed sloth has six cervical vertebrae and the three-toed sloth has up to nine cervical vertebrae. In many species, though not in mammals, the cervical vertebrae bear ribs. In many other groups, such as lizards and saurischian dinosaurs, the cervical ribs are large; in birds they are small and completely fused to the vertebrae. The transverse processes of mammals are homologous to the cervical ribs of other amniotes. Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. n humans, cervical vertebrae are the smallest of the true vertebrae, and can be readily distinguished from those of the thoracic or lumbar regions by the presence of a foramen (hole) in each transverse process, through which passes the vertebral artery.
subset: uberon_slim
synonym: "cervical vertebrae" EXACT PLURAL []
xref: EMAPA:17674
xref: FMA:9915
xref: GAID:235
xref: galen:CervicalVertebra
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Illu_vertebral_column.jpg/200px-Illu_vertebral_column.jpg
xref: MA:0000311
xref: MESH:A.02.835.232.834.151
xref: ncithesaurus:Cervical_Vertebra
xref: SCTID:181820005
xref: XAO:0003076
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003458 ! neck bone
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column
relationship: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0006072 ! cervical region of vertebral column

[Term]
id: UBERON:0002414
name: lumbar vertebra
namespace: uberon
alt_id: UBERON:FMA_9921-MA_0000312
def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebra]
comment: Whereas all rats had six lumbar vertebrae, variable patterns in mice included mostly five vertebrae in DBA/2J, mostly six vertebrae in C57BL/6J, and a mix in B6129PF2/J - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/
subset: uberon_slim
xref: EMAPA:18007
xref: FMA:9921
xref: GAID:240
xref: galen:LumbarVertebra
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c8/Gray93.png/200px-Gray93.png
xref: MA:0000312
xref: MESH:A.02.835.232.834.519
xref: ncithesaurus:Lumbar_Vertebra
xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA
xref: SCTID:181822002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003828 ! abdominal segment bone
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column
relationship: part_of UBERON:0006074 ! lumbar region of vertebral column

[Term]
id: UBERON:0002415
name: tail
namespace: uberon
alt_id: UBERON:MA_0000008-MIAA_0000094-WBbt_0005741-XAO_0003026-ZFA_0001117
def: "section at the rear end of an animal's body; in general, the term refers to a distinct, flexible appendage to the torso[WP]." [ISBN:0471209627, OMD:tail, Wikipedia:Tail, ZFIN:curator]
comment: Editor notes: Note we also have a subclass post-anal tail, for the chordate specific structure. currently defined very generally, inclusive of caudal fin
subset: grouping_class
subset: uberon_slim
synonym: "caudal subdivision" EXACT [UBERON:cjm]
xref: AEO:0000109
xref: BILA:0000117
xref: BTO:0001348
xref: EFO:0000963
xref: EHDAA:9198
xref: GAID:1245
xref: MAT:0000094
xref: MESH:A.13.895
xref: MIAA:0000094
xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA
xref: WBbt:0005741
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0002416
name: integumental system
namespace: uberon
alt_id: UBERON:MA_0000014-FMA_72979
def: "organ system that protects the body from damage, comprising the skin and its adnexa (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]." [Wikipedia:Integumentary_system]
comment: in FMA, integumentary system = integument + certain glands. Note that here we use integumental system in a general sense
subset: grouping_class
synonym: "integumentary system" EXACT [FMA:72979]
xref: EFO:0000807
xref: EHDAA2:0000836
xref: EHDAA:6520
xref: EMAPA:17524
xref: EV:0100151
xref: FBbt:00004969
xref: FMA:72979
xref: HAO:0000421
xref: MA:0000014
xref: MAT:0000033
xref: MESH:A.17
xref: ncithesaurus:Integumentary_System
xref: SCTID:361692004
xref: TADS:0000108
xref: VHOG:0000403
xref: XAO:0000176
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system

[Term]
id: UBERON:0002417
name: abdominal segment of trunk
namespace: uberon
alt_id: UBERON:MA_0000021-FMA_259211
def: "the abdominal segment of the torso." [Wikipedia:Lumbar]
synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021]
synonym: "lower body" RELATED [MA:0000021]
synonym: "lumbar region" RELATED [UBERON:cjm]
xref: FMA:259211
xref: MA:0000021
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk

[Term]
id: UBERON:0002418
name: cartilage tissue
namespace: uberon
alt_id: UBERON:MA_0000104-MIAA_0000189-XAO_0000170
def: "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts[VAO]." [http://sourceforge.net/tracker/?func=detail&atid=2257941&aid=3396584&group_id=76834, VAO:0000040, Wikipedia:Cartilage]
comment: Previous: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." See also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W]
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilage tissue" EXACT [FMA:37377]
synonym: "cartilaginous tissue" EXACT []
xref: AAO:0000060
xref: AEO:0000087
xref: BTO:0000206
xref: EFO:0000949
xref: EHDAA2:0003087
xref: EV:0100141
xref: FMA:37377
xref: GAID:99
xref: galen:Cartilage
xref: MA:0000104
xref: MAT:0000189
xref: MESH:A.02.165
xref: MIAA:0000189
xref: ncithesaurus:Cartilage
xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA
xref: SCTID:309312004
xref: TAO:0001501
xref: VAO:0000040
xref: VHOG:0001207
xref: XAO:0000170
xref: ZFA:0001501
xref: ZFA:0005622
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004755 ! skeletal tissue
relationship: part_of UBERON:0002204 ! musculoskeletal system

[Term]
id: UBERON:0002423
name: hepatobiliary system
namespace: uberon
alt_id: UBERON:MA_0000324-MIAA_0000024-XAO_0000132-ZFA_0000036
def: "The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct" [GO:0061008, Wikipedia:Hepatobiliary_system]
subset: uberon_slim
subset: vertebrate_core
synonym: "hepaticobiliary system" EXACT [GO:0061008]
synonym: "liver and biliary system" EXACT []
synonym: "liver/biliary system" RELATED []
xref: AAO:0011056
xref: EFO:0000800
xref: EHDAA2:0000998
xref: EHDAA:2189
xref: EMAPA:16840
xref: EV:0100088
xref: MA:0000324
xref: MAT:0000024
xref: MIAA:0000024
xref: ncithesaurus:Hepatobiliary_System
xref: TAO:0000036
xref: VHOG:0000294
xref: XAO:0000132
xref: ZFA:0000036
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0002426
name: chest muscle
namespace: uberon
alt_id: UBERON:MA_0000548-FMA_9619
def: "A muscle organ that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region muscle organ" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax muscle organ" EXACT [OBOL:automatic]
synonym: "chest muscle organ" EXACT [OBOL:automatic]
synonym: "front of thorax muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of thorax" EXACT [FMA:9619]
synonym: "muscle organ of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "muscle organ of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "muscle organ of chest" EXACT [OBOL:automatic]
synonym: "muscle organ of front of thorax" EXACT [OBOL:automatic]
synonym: "musculus thoracicus" EXACT []
synonym: "thoracic muscle" EXACT []
xref: BTO:0000508
xref: FMA:9619
xref: MA:0000548
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0005175 ! chest organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest

[Term]
id: UBERON:0002428
name: limb bone
namespace: uberon
alt_id: UBERON:MA_0000688-MIAA_0000151
def: "A bone that is part of a limb [Obol]." [OBOL:automatic]
comment: AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids
synonym: "bone of limb" EXACT [OBOL:automatic]
synonym: "free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
xref: EFO:0000880
xref: EFO:0000945
xref: MAT:0000151
xref: MIAA:0000151
xref: ncithesaurus:Bone_of_the_Extremity
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004375 ! bone of appendage
is_a: UBERON:0010740 ! bone of appendage girdle complex
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002101 ! limb
relationship: develops_from UBERON:0010881 ! limb bone cartilaginous condensation
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0002445
name: triquetral
namespace: uberon
alt_id: UBERON:MA_0001347-FMA_23715
def: "The triquetral bone (also called triquetrum bone, pyramidal bone, three-cornered bone, and triangular bone) is located in the wrist on the medial side of the proximal row of the carpus between the lunate and pisiform bones. It is on the ulnar side of the hand, but does not articulate with the ulna. It connects with the pisiform, hamate, and lunate bones. It is the 3rd most commonly fractured carpal bone. The triangular bone may be distinguished by its pyramidal shape, and by an oval isolated facet for articulation with the pisiform bone. It is situated at the upper and ulnar side of the carpus. To facilitate its palpation in an exam, the hand must be radially deviated so that the triquetrium moves out from under the ulnar styloid process. The triquetrum may be difficult to find, since it also lies under the pisiform. The etymology derives from the Latin triquetrus which means 'three-cornered'. In reptiles and amphibians, the bone is instead referred to as the ulnare, since (at least in the most primitive fossils) it articulates with the ulna. [WP,unvetted]." [Wikipedia:Triquetral]
comment: AAO: ulnare: One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements.
subset: uberon_slim
synonym: "cuneiform bone of hand" EXACT []
synonym: "cuneiform of hand" RELATED [MA:0001347]
synonym: "os triquetrum" EXACT [FMA:23715, FMA:TA]
synonym: "os ulnare" EXACT [UBERON:cjm]
synonym: "triangular" RELATED [MA:0001347]
synonym: "triangular bone" EXACT []
synonym: "triquetral bone" EXACT []
synonym: "triquetrum" RELATED [MA:0001347]
synonym: "ulnar carpal bone" RELATED [MA:0001347]
synonym: "ulnare" EXACT HOMOLOGY [AAO:0000845]
xref: AAO:0000845
xref: FMA:23715
xref: galen:Triquetral
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001347
xref: ncithesaurus:Triangular_Bone
xref: SCTID:181965000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001480 ! proximal carpal bone

[Term]
id: UBERON:0002446
name: patella
namespace: uberon
alt_id: UBERON:MA_0001374-FMA_24485
def: "The patella, also known as the knee cap or kneepan, is a thick, circular-triangular bone which articulates with the femur and covers and protects the knee joint. It is the largest sesamoid bone in the human body. It is attached to the tendon of the quadriceps femoris muscle, which contracts to extend/straighten the knee. The vastus intermedialis muscle is attached to the base of patella. The vastus lateralis and vastus medialis are attached to lateral and medial borders of patella respectively. The patella is stabilized by the insertion of vastus medialis and the prominence of the anterior femoral condyles, which prevent lateral dislocation during flexion. The retinacular fibres of the patella also stabilize it during exercise. The primary functional role of the patella is knee extension. The patella increases the leverage that the tendon can exert on the femur by increasing the angle at which it acts. The patella ossifies between the ages 2-6 years. In some people it may be absent congenitally or hypoplastic. In 2% of the population there is a bipartite patella, which is usually asymptomatic. Direct trauma, however, may produce symptoms that mimic those of a fracture. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, Wikipedia:Patella]
comment: See also: fabella
subset: uberon_slim
synonym: "knee bone" RELATED [FMA:24485]
xref: FMA:24485
xref: GAID:203
xref: galen:Patella
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png
xref: MA:0001374
xref: MESH:A.02.835.232.500.624
xref: ncithesaurus:Patella
xref: SCTID:182083008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone
is_a: UBERON:0005893 ! leg bone
intersection_of: UBERON:0001474 ! bone
intersection_of: adjacent_to UBERON:0000981 ! femur
intersection_of: part_of UBERON:0001465 ! knee
relationship: adjacent_to UBERON:0000981 ! femur
relationship: part_of UBERON:0001465 ! knee

[Term]
id: UBERON:0002458
name: spinal artery
namespace: uberon
alt_id: UBERON:MA_0002043-ZFA_0000682
def: "." [Wikipedia:Spinal_artery]
subset: uberon_slim
subset: vertebrate_core
synonym: "spinal arteries" RELATED [ZFA:0000682]
xref: EHDAA2:0001890
xref: EHDAA:4355
xref: EMAPA:18241
xref: MA:0002043
xref: ncithesaurus:Spinal_Artery
xref: SCTID:244228006
xref: TAO:0000682
xref: ZFA:0000682
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001637 ! artery
is_a: UBERON:0004258 ! back blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0002461
name: anterior abdominal wall muscle
namespace: uberon
alt_id: UBERON:MA_0002268-FMA_20278
synonym: "muscle of anterior abdominal wall" EXACT [FMA:20278]
xref: EHDAA2:0000125
xref: FMA:20278
xref: MA:0002268
xref: ncithesaurus:Anterior_Abdominal_Wall_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002378 {source="FMA"} ! muscle of abdomen
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0006635 ! anterior abdominal wall
relationship: part_of UBERON:0006635 ! anterior abdominal wall

[Term]
id: UBERON:0002462
name: erector spinae
namespace: uberon
alt_id: UBERON:MA_0002289-FMA_71302
def: "The Erector spinæ is a muscle of the back in humans and other animals. It is also known as sacrospinalis in older texts. A more modern term is extensor spinae, though this is not in widespread use. The name of the muscle is pronounced e-rec-tor speen-aye, or e-rec-tor spinae-ee. It is really not just one muscle, but a bundle of muscles and tendons. It is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column. Erector spinae is covered in the lumbar and thoracic regions by the lumbodorsal fascia, and in the cervical region by the nuchal ligament. This large muscular and tendinous mass varies in size and structure at different parts of the vertebral column. In the sacral region it is narrow and pointed, and at its origin chiefly tendinous in structure. In the lumbar region it is larger, and forms a thick fleshy mass which, on being followed upward, is subdivided into three columns; these gradually diminish in size as they ascend to be inserted into the vertebræ and ribs. The erector spinae arises from the anterior surface of a broad and thick tendon, which is attached to the medial crest of the sacrum, to the spinous processes of the lumbar and the eleventh and twelfth thoracic vertebræ, and the supraspinal ligament, to the back part of the inner lip of the iliac crests and to the lateral crests of the sacrum, where it blends with the sacrotuberous and posterior sacroiliac ligaments. Some of its fibers are continuous with the fibers of origin of the Glutæus maximus. The muscular fibers form a large fleshy mass which splits, in the upper lumbar region into three columns, viz. , a lateral, the Iliocostalis, an intermediate, the Longissimus, and a medial, the Spinalis. Each of these consists from below upward, of three parts, as follows: [WP,unvetted]." [Wikipedia:Erector_spinae]
subset: uberon_slim
synonym: "erector spinae muscle group" EXACT [FMA:71302]
synonym: "extensor spinae" EXACT [Wikipedia:Erector_spinae]
xref: BTO:0001652
xref: EHDAA2:0000454
xref: EHDAA:9456
xref: EMAPA:18168
xref: FMA:71302
xref: MA:0002289
xref: ncithesaurus:Erector_Spinae
xref: OpenCyc:Mx4rwC7lnJwpEbGdrcN5Y29ycA
xref: VHOG:0000984
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003897 {source="EHDAA2"} ! axial muscle
relationship: adjacent_to UBERON:0001130 ! vertebral column
relationship: develops_from UBERON:0010961 {source="EHDAA2"} ! erector spinae pre-muscle mass

[Term]
id: UBERON:0002463
name: hamstring muscle
namespace: uberon
alt_id: UBERON:MA_0002312-FMA_81022
def: "In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted]." [Wikipedia:Hamstring]
comment: check FMA, singular.
subset: uberon_slim
synonym: "hamstring muscles" EXACT []
synonym: "hamstring muscles set" EXACT []
synonym: "hamstrings" EXACT []
xref: BTO:0003179
xref: EHDAA2:0000727
xref: EHDAA:8295
xref: EMAPA:19072
xref: EMAPA:19145
xref: FMA:81022
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG
xref: MA:0002312
xref: ncithesaurus:Hamstring
xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA
xref: VHOG:0000844
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0002465
name: lymphoid system
namespace: uberon
alt_id: UBERON:0002096
alt_id: UBERON:MA_0002435-FMA_74594
def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [https://sourceforge.net/tracker/?func=detail&aid=3153468&group_id=76834&atid=1205376, Wikipedia:Lymphoid_system]
comment: We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments.
subset: uberon_slim
subset: vertebrate_core
synonym: "lymphatic circulatory system" RELATED [UBERON:cjm]
synonym: "lymphatic system" NARROW [ZFA:0000385]
xref: AAO:0010522
xref: EFO:0000870
xref: EHDAA2:0001043
xref: EHDAA:8677
xref: EMAPA:18248
xref: FMA:74594
xref: GAID:931
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Illu_capillary_microcirculation.jpg/200px-Illu_capillary_microcirculation.jpg
xref: MA:0002435
xref: MAT:0000197
xref: MIAA:0000197
xref: ncithesaurus:Lymphatic_System
xref: OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA
xref: SCTID:362589007
xref: TAO:0000385
xref: VHOG:0000842
xref: XAO:0003199
xref: ZFA:0000385
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002193 ! hemolymphoid system
relationship: part_of UBERON:0002405 ! immune system

[Term]
id: UBERON:0002469
name: esophagus mucosa
namespace: uberon
alt_id: UBERON:0003345
alt_id: UBERON:MA_0002680-FMA_62996
def: "A mucosa that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal mucosa" EXACT []
synonym: "esophagus mucosa" EXACT [FMA:62996]
synonym: "esophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "esophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "esophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa of organ" EXACT [OBOL:automatic]
synonym: "gullet mucous membrane" EXACT [OBOL:automatic]
synonym: "gullet organ mucosa" EXACT [OBOL:automatic]
synonym: "lamina muscularis mucosae oesophageae" EXACT [FMA:62996, FMA:TA]
synonym: "mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oesophagus" EXACT [OBOL:automatic]
synonym: "mucous membrane of esophagus" EXACT []
synonym: "mucous membrane of gullet" EXACT [OBOL:automatic]
synonym: "mucous membrane of oesophagus" EXACT [FMA:62996]
synonym: "muscularis mucosae of oesophagus" RELATED INCONSISTENT [FMA:62996]
synonym: "oesophageal mucosa" EXACT [FMA:62996]
synonym: "oesophagus mucosa" EXACT []
synonym: "oesophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "oesophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "oesophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "organ mucosa of gullet" EXACT [OBOL:automatic]
synonym: "organ mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "tunica mucosa esophagi" EXACT []
synonym: "tunica mucosa oesophageae" EXACT [FMA:62996, FMA:TA]
synonym: "tunica mucosa oesophagi" EXACT []
synonym: "tunica mucosa oesophagi" RELATED [BTO:0002859]
xref: BTO:0002859
xref: EMAPA:26981
xref: EMAPA:26991
xref: FMA:62996
xref: MA:0002680
xref: ncithesaurus:Esophageal_Mucosa
xref: SCTID:362127004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus

[Term]
id: UBERON:0002470
name: autopod region
namespace: uberon
alt_id: UBERON:MA_0002714-MIAA_0000091
def: "Terminal segment of free upper limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot" [UBERON:cjm]
comment: Naming conventions for pod terms under discussion within phenoscape group; note that this refers to the limb segment, not just the skeleton.
subset: uberon_slim
synonym: "autopod" BROAD [MA:0002714]
synonym: "autopodial limb segment" EXACT [MA:th]
synonym: "autopodial segment" EXACT []
synonym: "autopodium" EXACT []
synonym: "autopodium region" EXACT []
synonym: "distal free limb segment" EXACT [FMA:83015]
synonym: "distal segment of free limb" EXACT [FMA:83015]
synonym: "paw" RELATED []
synonym: "pod" RELATED []
xref: BTO:0004359
xref: EFO:0000877
xref: FMA:83015
xref: MA:0002714
xref: MAT:0000091
xref: MIAA:0000091
xref: ncithesaurus:Paw
xref: SCTID:95936004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: develops_from UBERON:0010130 {evidence="definitional"} ! autopod plate
relationship: distally_connected_to UBERON:0002471 ! zeugopod

[Term]
id: UBERON:0002471
name: zeugopod
namespace: uberon
alt_id: UBERON:MA_0002716-MIAA_0000092
def: "The middle part of the limb (e.g. between the elbow and wrist)" []
comment: Naming conventions for pod terms under discussion within phenoscape group
subset: uberon_slim
synonym: "epipodium" EXACT [MA:th]
synonym: "middle free limb segment" EXACT [FMA:83016]
synonym: "middle limb segment" EXACT []
synonym: "middle part of limb" BROAD []
synonym: "zeugopod limb segment" EXACT [MA:th]
synonym: "zeugopodial limb segment" EXACT [MA:th]
synonym: "zeugopodium" EXACT []
xref: EFO:0000878
xref: FMA:83016
xref: MA:0002716
xref: MAT:0000092
xref: MIAA:0000092
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: distal_to UBERON:0002472 ! stylopod

[Term]
id: UBERON:0002472
name: stylopod
namespace: uberon
alt_id: UBERON:MA_0002717-MIAA_0000093
def: "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." []
comment: Naming conventions for pod terms under discussion within phenoscape group
subset: uberon_slim
synonym: "propodium" EXACT [MA:th]
synonym: "proximal free limb segment" EXACT [FMA:83014]
synonym: "proximal part of limb" BROAD []
synonym: "stylopodial limb segment" EXACT [MA:th]
synonym: "stylopodium" EXACT []
xref: EFO:0000879
xref: FMA:83014
xref: MA:0002717
xref: MAT:0000093
xref: MIAA:0000093
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0002478
name: orbitosphenoid
namespace: uberon
alt_id: UBERON:MA_0002773-ZFA_0000253
def: "One of two thin triangular plates, which arise from the upper and anterior parts of the body, and, projecting lateralward, end in sharp points." [Wikipedia:Lesser_wing_of_sphenoid_bone]
subset: vertebrate_core
synonym: "ala minor (os sphenoidale)" EXACT [FMA:52869]
synonym: "ingrassia's process" EXACT [FMA:52869]
synonym: "lesser wing of sphenoid" EXACT [FMA:52869]
synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773]
synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869]
xref: AAO:0000345
xref: EMAPA:18719
xref: FMA:52869
xref: MA:0002773
xref: SCTID:361737003
xref: TAO:0000253
xref: VHOG:0001153
xref: ZFA:0000253
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage condensation
relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center
relationship: part_of UBERON:0001677 ! sphenoid bone
relationship: part_of UBERON:0003111 {source="ZFA"} ! sphenoid region

[Term]
id: UBERON:0002481
name: bone tissue
namespace: uberon
alt_id: UBERON:MA_0002780-FMA_224804
def: "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts[VAO]." [VAO:0000047, Wikipedia:Bone_tissue]
subset: uberon_slim
synonym: "calcium tissue" EXACT []
synonym: "osseous tissue" EXACT []
synonym: "osteogenic tissue" EXACT [VAO:curator]
xref: FMA:224804
xref: galen:BoneTissue
xref: MA:0002780
xref: MESH:A.02.835.232
xref: ncithesaurus:Bone_Tissue
xref: VAO:0000047
xref: ZFA:0005621
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004755 {source="VAO"} ! skeletal tissue
disjoint_from: UBERON:0005090 ! muscle structure
relationship: part_of UBERON:0001474 ! bone

[Term]
id: UBERON:0002482
name: lamellar bone
namespace: uberon
alt_id: UBERON:MA_0002781-FMA_224806
def: "Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong." [Wikipedia:Bone#Woven_or_lamellar]
comment: histological classification, lamellar vs woven. Note that only FMA has woven
xref: FMA:224806
xref: galen:LamellarBone
xref: MA:0002781
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue

[Term]
id: UBERON:0002483
name: trabecular bone tissue
namespace: uberon
alt_id: UBERON:MA_0002782-FMA_24019
def: "Cancellous bone, synonymous with trabecular bone or spongy bone, is one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occupies the interior region of bones. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. Its Latin name is substantia spongiosa or substantia spongiosa ossium. The words cancellous and trabecular refer to the tiny, lattice-shaped that form the tissue. [WP,unvetted]." [Wikipedia:Trabecular_bone]
comment: one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula.
subset: uberon_slim
synonym: "cancellated bone" RELATED [BTO:0001700]
synonym: "cancellous bone" EXACT [FMA:24019, MA:0002782]
synonym: "cancellous bone tissue" EXACT []
synonym: "spongy bone" EXACT []
synonym: "spongy bone tissue" EXACT []
synonym: "substantia spongiosa" EXACT [Wikipedia:Trabecular_bone]
synonym: "substantia spongiosa ossium" EXACT [Wikipedia:Trabecular_bone]
synonym: "substantia trabecularis ossium" RELATED [BTO:0001700]
synonym: "trabecular bone" EXACT []
synonym: "trabecular substance" RELATED [BTO:0001700]
xref: BTO:0001700
xref: FMA:24019
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Illu_compact_spongy_bone.jpg/200px-Illu_compact_spongy_bone.jpg
xref: MA:0002782
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
relationship: part_of UBERON:0002482 ! lamellar bone

[Term]
id: UBERON:0002484
name: bone marrow cavity
namespace: uberon
alt_id: UBERON:MA_0002783-FMA_75147
def: "the central cavity of bone shafts where red bone marrow and/or yellow bone marrow (adipose tissue) is stored; hence, the medullary cavity is also known as the marrow cavity. Located in the main shaft (cortical bone) of a long bone (diaphysis) (consisting mostly of compact bone), the medullary cavity has walls composed of spongy bone (cancellous bone) and is lined with a thin, vascular membrane (endosteum)" [Wikipedia:Medullary_cavity]
comment: AO notes: not clear if the FMA intends to have two classes. MP:0000065: "the medullary cavities of the bones."
synonym: "cavity of cancellous bone" EXACT []
synonym: "marrow cavity" EXACT [FMA:83698]
synonym: "medullary cavity" EXACT [FMA:83698]
xref: FMA:75147
xref: FMA:83698
xref: MA:0002783
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001439 ! compact bone

[Term]
id: UBERON:0002487
name: tooth cavity
namespace: uberon
alt_id: UBERON:MA_0002792-FMA_55660
def: "." [Wikipedia:Tooth_cavity]
subset: uberon_slim
synonym: "cavitas dentis" EXACT []
synonym: "cavitas pulparis" EXACT [FMA:55660, FMA:TA]
synonym: "cavity of tooth" RELATED [MA:0002792]
synonym: "pulp cavity" EXACT []
synonym: "pulp cavity of tooth" EXACT []
synonym: "tooth pulp cavity" RELATED [MA:0002792]
xref: FMA:55660
xref: MA:0002792
xref: MESH:A.14.254.900.265
xref: SCTID:362105008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0002489
name: coronal suture
namespace: uberon
alt_id: UBERON:MA_0002795-FMA_52928
def: "The coronal suture is a dense, fibrous connective tissue joint that separates the frontal and parietal bones of the skull. At birth, the bones of the skull do not meet. [WP,unvetted]." [Wikipedia:Coronal_suture]
subset: uberon_slim
synonym: "coronal suture of skull" EXACT []
synonym: "fronto-parietal suture" EXACT [PMID:11784098]
xref: EMAPA:19225
xref: FMA:52928
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray188-Coronal_suture.png/200px-Gray188-Coronal_suture.png
xref: MA:0002795
xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA
xref: SCTID:244510008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 {source="GO"} ! cranial suture
relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone
relationship: adjacent_to UBERON:0000210 ! tetrapod parietal bone
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0002490
name: frontal suture
namespace: uberon
alt_id: UBERON:MA_0002796-FMA_52989
def: "The frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]." [Wikipedia:Frontal_suture]
subset: uberon_slim
synonym: "frontal suture of skull" EXACT []
synonym: "metopic suture" RELATED [MA:0002796]
synonym: "sutura frontalis" EXACT [Wikipedia:Frontal_suture]
synonym: "sutura metopica" EXACT [FMA:52989, FMA:TA]
xref: EMAPA:19226
xref: FMA:52989
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray134.png/200px-Gray134.png
xref: MA:0002796
xref: SCTID:136854008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 ! cranial suture
relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone

[Term]
id: UBERON:0002491
name: lambdoid suture
namespace: uberon
alt_id: UBERON:MA_0002797-FMA_52933
def: "The lambdoid suture (or lambdoidal suture) is a dense, fibrous connective tissue joint on the posterior aspect of the skull that connects the parietal and temporal bones with the occipital bone. Its name comes from its lambda-like shape. [WP,unvetted]." [Wikipedia:Lambdoid_suture]
subset: uberon_slim
synonym: "lambdoid suture of skull" EXACT []
synonym: "lambdoidal suture" RELATED [MA:0002797]
synonym: "sutura lambdoidea" RELATED [Wikipedia:Lambdoid_suture]
xref: EMAPA:19227
xref: FMA:52933
xref: MA:0002797
xref: SCTID:361830007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 {source="GO"} ! cranial suture
relationship: adjacent_to UBERON:0000210 ! tetrapod parietal bone
relationship: adjacent_to UBERON:0001676 ! occipital bone
relationship: adjacent_to UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0002492
name: sagittal suture
namespace: uberon
alt_id: UBERON:MA_0002798-FMA_52929
def: "The sagittal suture is a dense, fibrous connective tissue joint between the two parietal bones of the skull. At birth, the bones of the skull do not meet. If certain bones of the skull grow too fast then 'premature closure' of the sutures may occur. This can result in skull deformities. If the sagittal suture closes early the skull becomes long, narrow, and wedge-shaped, a condition called 'scaphocephaly. ' Two anatomical landmarks are found on the sagittal suture: the bregma and the vertex of the skull. The bregma is formed by the intersection of the sagittal and coronal sutures, and the vertex is the highest point on the skull and is many times near the midpoint of the sagittal suture. The sagittal suture is also known as the 'interparietal suture' and the 'sutura interparietalis. ' The term is derived from the Latin word Sagitta, meaning 'arrow'. The derivation of this term may be demonstrated by observing how the sagittal suture is notched posteriorly, like an arrow, by the lambdoid suture. [WP,unvetted]." [Wikipedia:Sagittal_suture]
subset: uberon_slim
synonym: "sagittal suture of skull" EXACT []
xref: EMAPA:19224
xref: FMA:52929
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Kort-lang-skalle.gif/200px-Kort-lang-skalle.gif
xref: MA:0002798
xref: SCTID:244511007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 ! cranial suture
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0002494
name: papillary muscle
namespace: uberon
alt_id: UBERON:MA_0002800-FMA_12154
def: "In anatomy, the papillary muscles of the heart serve to limit the movements of the mitral and tricuspid valves. These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities. [WP,unvetted]." [Wikipedia:Papillary_muscle]
subset: uberon_slim
synonym: "papillary muscle of ventricle" EXACT [MA:0002800]
synonym: "ventricular papillary muscle" EXACT [MA:0002800]
synonym: "ventricule papillary muscle" EXACT []
xref: EHDAA:8655
xref: FMA:12154
xref: GAID:175
xref: galen:PapillaryMuscle
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Papillary_muscles.png/200px-Papillary_muscles.png
xref: MA:0002800
xref: MESH:A.02.633.580.680
xref: ncithesaurus:Papillary_Muscle
xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ
xref: SCTID:279329009
xref: VHOG:0001392
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002082 ! cardiac ventricle

[Term]
id: UBERON:0002495
name: long bone
namespace: uberon
alt_id: UBERON:MA_0002802-FMA_7474
def: "Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VAO]." [VAO:wd, Wikipedia:Long_bone]
comment: Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251]
subset: uberon_slim
xref: BTO:0004256
xref: FMA:7474
xref: galen:LongBone
xref: MA:0002802
xref: ncithesaurus:Long_Bone
xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA
xref: SCTID:332709000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0002091 ! entire appendicular skeleton

[Term]
id: UBERON:0002496
name: stapes base
namespace: uberon
alt_id: UBERON:MA_0002804-FMA_52769
subset: uberon_slim
synonym: "base of stapes" RELATED [MA:0002804]
synonym: "footplate" RELATED []
synonym: "stapes footplate" RELATED [MA:0002804]
xref: EHDAA:5143
xref: EHDAA:6096
xref: FMA:52769
xref: MA:0002804
xref: SCTID:279685009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001687 ! stapes

[Term]
id: UBERON:0002497
name: acromion
namespace: uberon
alt_id: UBERON:MA_0002805-FMA_23260
def: "Region of the scapula where the latter meets with the clavicle: attachment point of the clavicle to the scapula in some taxa." [VAO:0005067, Wikipedia:Acromion]
subset: uberon_slim
synonym: "acromion of the scapula" RELATED [Wikipedia:Acromion]
synonym: "acromion process" EXACT [VAO:0005067]
synonym: "scapular acromion" EXACT [VAO:0005067]
xref: AAO:0000826
xref: EMAPA:25119
xref: FMA:23260
xref: GAID:187
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/79/Gray206.png/200px-Gray206.png
xref: MA:0002805
xref: MESH:A.02.835.232.087.783.261
xref: ncithesaurus:Acromion
xref: OpenCyc:Mx4rvmrF8pwpEbGdrcN5Y29ycA
xref: SCTID:181911000
xref: VAO:0005067
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001124 {source="FMA"} ! pectoral limb scapula

[Term]
id: UBERON:0002498
name: deltoid tuberosity
namespace: uberon
alt_id: UBERON:MA_0002808-FMA_23418
def: "The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. [WP,unvetted]." [Wikipedia:Deltoid_tuberosity]
subset: uberon_slim
synonym: "deltoid crest" EXACT [MP:0004353]
synonym: "deltoid eminence" EXACT [MP:0004353]
synonym: "deltoid impression" EXACT [MP:0004353]
synonym: "deltoid process" EXACT [MP:0004353]
synonym: "deltoid tuberosity of humerus" EXACT [FMA:23418]
synonym: "tuberositas deltoidea" EXACT [FMA:23418, FMA:TA]
synonym: "tuberositas deltoidea (corpus humeri)" EXACT []
xref: EMAPA:25052
xref: FMA:23418
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/HumerusFront.png/200px-HumerusFront.png
xref: MA:0002808
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0005813 ! tubercle
relationship: part_of UBERON:0004652 ! humerus diaphysis

[Term]
id: UBERON:0002499
name: cochlear labyrinth
namespace: uberon
alt_id: UBERON:MA_0002809-FMA_61259
def: "For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth]
comment: WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear
subset: uberon_slim
xref: BTO:0004686
xref: FMA:61259
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0002809
xref: ncithesaurus:Cochlear_Labyrinth
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth

[Term]
id: UBERON:0002500
name: zygomatic arch
namespace: uberon
alt_id: UBERON:MA_0002810-FMA_53120
def: "The zygomatic arch or cheek bone is formed by the zygomatic process of temporal bone (a bone extending forward from the side of the skull, over the opening of the ear) and the temporal process of the zygomatic bone (the side of the cheekbone), the two being united by an oblique suture; the tendon of the Temporalis passes medial to the arch to gain insertion into the coronoid process of the mandible. The term zygomatic derives from the Latin zyosislymore meaning malar bone or cheekbone. The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. [WP,unvetted]." [Wikipedia:Zygomatic_arch]
subset: uberon_slim
synonym: "zygoma" EXACT []
xref: FMA:53120
xref: galen:Zygoma
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray188-Sphenozygomatic_suture.png/200px-Gray188-Sphenozygomatic_suture.png
xref: MA:0002810
xref: MESH:A.02.835.232.781.324.995
xref: ncithesaurus:Zygomatic_Arch
xref: OpenCyc:Mx4rvih1YZwpEbGdrcN5Y29ycA
xref: SCTID:272682006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0002501
name: oval window
namespace: uberon
alt_id: UBERON:MA_0002813-FMA_56913
def: "The oval window (or vestibular window) is a membrane-covered opening which leads from the middle ear to the vestibule of the inner ear. Vibrations that come into contact with the tympanic membrane travel through the three ossicles and into the inner ear. The oval window is the intersection of the middle ear with the inner ear, and is directly contacted by the stapes; by the time vibrations reach the oval window, they have been amplified over twenty times from what they were when they contacted the tympanic membrane, a testament to the amplifying power of the middle ear. It is a reniform (kidney-shaped) opening leading from the tympanic cavity into the vestibule of the internal ear; its long diameter is horizontal, and its convex border is upward. In the recent state it is occupied by the base of the stapes, the circumference of which is fixed by the annular ligament to the margin of the foramen. [WP,unvetted]." [Wikipedia:Oval_window]
subset: uberon_slim
synonym: "oval window of petrous part of temporal bone" EXACT []
synonym: "vestibular window" RELATED [MA:0002813]
xref: FMA:56913
xref: GAID:882
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png
xref: MA:0002813
xref: MESH:A.09.246.631.909.551
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001694 ! petrous part of temporal bone

[Term]
id: UBERON:0002502
name: round window
namespace: uberon
alt_id: UBERON:MA_0002814-FMA_56932
def: "The round window is one of the two openings into the cochlea of the inner ear. It is closed off from the middle ear by the round window membrane, which vibrates with opposite phase to vibrations entering the cochlea through the oval window. It allows fluid in the cochlea to move, which in turn ensures that hair cells of the basilar membrane will be stimulated and that audition will occur. [WP,unvetted]." [Wikipedia:Round_window]
subset: uberon_slim
synonym: "cochlear window" RELATED [MA:0002814]
synonym: "round window of petrous part of temporal bone" EXACT []
xref: FMA:56932
xref: GAID:878
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png
xref: MA:0002814
xref: MESH:A.09.246.631.246.814
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001694 ! petrous part of temporal bone

[Term]
id: UBERON:0002503
name: greater trochanter
namespace: uberon
alt_id: UBERON:MA_0002822-FMA_32852
def: "The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]." [Wikipedia:Greater_trochanter]
subset: uberon_slim
synonym: "greater trochanter of femur" EXACT []
xref: FMA:32852
xref: galen:GreaterTrochanter
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray243.png/200px-Gray243.png
xref: MA:0002822
xref: SCTID:182050001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000980 ! trochanter
relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur

[Term]
id: UBERON:0002504
name: lesser trochanter
namespace: uberon
alt_id: UBERON:MA_0002823-FMA_32853
def: "The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]." [Wikipedia:Lesser_trochanter]
subset: uberon_slim
synonym: "lesser trochanter of femur" EXACT []
xref: FMA:32853
xref: galen:LesserTrochanter
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png
xref: MA:0002823
xref: ncithesaurus:Lesser_Trochanter
xref: SCTID:182051002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000980 ! trochanter
relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur

[Term]
id: UBERON:0002510
name: anterior fontanel
namespace: uberon
alt_id: UBERON:MA_0002830-FMA_75439
def: "The anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]." [Wikipedia:Anterior_fontanelle]
synonym: "anterior fontanelle" EXACT [FMA:75439]
xref: EMAPA:19199
xref: FMA:75439
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png
xref: MA:0002830
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002221 ! fontanelle

[Term]
id: UBERON:0002511
name: trabecula carnea
namespace: uberon
alt_id: UBERON:MA_0002831-FMA_7269
def: "The trabeculae carneae (columnae carneae, or fleshy beams), are rounded or irregular muscular columns which project from the inner surface of the right and left ventricles of the heart.[1] They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only. They are of three kinds: * some are attached along their entire length on one side and merely form prominent ridges,* others are fixed at their extremities but free in the middle, * while a third set, the papillary muscles are continuous by their bases with the wall of the ventricle, while their apices give origin to the chordæ tendineæ which pass to be attached to the segments of both the mitral valve and the tricuspid valve. The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented[WP]." [Wikipedia:Trabeculae_carneae]
comment: Note that WP states they are ventricular, but MP has classes for atrial ventricular carnea.
synonym: "cardiac trabecula" RELATED [GO:0060347]
synonym: "heart trabecula" RELATED [GO:0060347]
synonym: "trabecula of heart" RELATED []
synonym: "ventricle trabecula carnea" EXACT [MA:0002831]
synonym: "ventricular trabecula" RELATED [MA:0002831]
xref: EMAPA:18626
xref: FMA:7269
xref: MA:0002831
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0002513
name: endochondral bone
namespace: uberon
alt_id: UBERON:MA_0002836-ZFA_0001591
def: "Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_bone]
comment: note that some structures, e.g. in ZFA are both intramembrane and endochondral. Editor notes: placement in this class to be inferred
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilaginous bone" RELATED [BTO:0002157]
xref: AAO:0010776
xref: AEO:0000083
xref: BTO:0002157
xref: EHDAA2:0003083
xref: TAO:0001591
xref: VAO:0000145
xref: XAO:0004018
xref: ZFA:0001591
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0010363 {source="VAO"} ! endochondral element
intersection_of: UBERON:0001474 ! bone
intersection_of: develops_from UBERON:0005863 ! cartilaginous condensation
relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue
relationship: develops_from UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0007844 {source="VAO"} ! cartilaginous element

[Term]
id: UBERON:0002514
name: intramembranous bone
namespace: uberon
alt_id: UBERON:MA_0002837-ZFA_0001635
def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
synonym: "membrane bone" RELATED [AEO:0000085]
xref: AEO:0000085
xref: EHDAA2:0003085
xref: TAO:0001644
xref: ZFA:0001635
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
relationship: develops_from UBERON:0003104 ! mesenchyme

[Term]
id: UBERON:0002515
name: periosteum
namespace: uberon
alt_id: UBERON:MA_0002838-FMA_24041
def: "Periosteum is a membrane that lines the outer surface of all bones, except at the joints of long bones. Endosteum lines the inner surface of all bones. Periosteum consists of dense irregular connective tissue. Periosteum is divided into an outer 'fibrous layer' and inner 'cambium layer' (or 'osteogenic layer'). The fibrous layer contains fibroblasts, while the cambium layer contains progenitor cells that develop into osteoblasts. These osteoblasts are responsible for increasing the width of a long bone and the overall size of the other bone types. After a bone fracture the progenitor cells develop into osteoblasts and chondroblasts, which are essential to the healing process. As opposed to osseous tissue, periosteum has nociceptors nerve endings, making it very sensitive to manipulation. It also provides nourishment by providing the blood supply. Periosteum is attached to bone by strong collagenous fibers called Sharpey's fibres, which extend to the outer circumferential and interstitial lamellae. It also provides an attachment for muscles and tendons. Periosteum that covers the outer surface of the bones of the skull is known as 'pericranium'. [WP,unvetted]." [Wikipedia:Periosteum]
subset: uberon_slim
xref: BTO:0001022
xref: FMA:24041
xref: GAID:925
xref: galen:PeriOsteum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Bone_growth.png/200px-Bone_growth.png
xref: MA:0002838
xref: MESH:A.10.165.265.746
xref: ncithesaurus:Periosteum
xref: SCTID:33840008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0001474 ! bone

[Term]
id: UBERON:0002516
name: epiphyseal plate
namespace: uberon
alt_id: UBERON:MA_0002839-FMA_75427
def: "a hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line." [Wikipedia:Epiphyseal_plate]
comment: editor note: consider splitting this class into the epiphyseal plates of long bones and vertebrae
subset: uberon_slim
synonym: "cartilago epiphysialis" RELATED [BTO:0000412]
synonym: "epiphyseal cartilage" RELATED []
synonym: "epiphyseal disk" RELATED [BTO:0000412]
synonym: "epiphyseal growth disk" RELATED [BTO:0000412]
synonym: "epiphyseal growth plate" EXACT []
synonym: "epiphyseal growth plate cartilage" EXACT []
synonym: "epiphysial plate" EXACT [FMA:75427]
synonym: "growth plate" RELATED [MA:0002839]
synonym: "long bone epiphyseal plate" EXACT [MA:0002839]
synonym: "physis" RELATED [BTO:0000412]
xref: BTO:0000412
xref: EMAPA:25059
xref: EMAPA:25062
xref: EMAPA:25065
xref: EMAPA:25068
xref: EMAPA:25071
xref: FMA:75427
xref: GAID:191
xref: MA:0002839
xref: MESH:A.02.835.232.251.352
xref: SCTID:84349008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001994 ! hyaline cartilage
relationship: part_of UBERON:0001438 ! metaphysis

[Term]
id: UBERON:0002517
name: basicranium
namespace: uberon
alt_id: UBERON:MA_0002840-FMA_52801
def: "The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof." [Wikipedia:Base_of_skull]
comment: The skull base is formed from a series of cartilages either side of, and rostral to, the notochord, whose tip lies just caudal to the pituitary gland. It is closely associated with the sensory capsules, which partially or completely sur- round the olfactory epithelium, the eye, and the inner ear[PMID:11523816]
subset: uberon_slim
synonym: "base of skull" EXACT []
synonym: "basis cranii" EXACT [FMA:52801, FMA:TA]
synonym: "cranial base" RELATED [MA:0002840]
xref: FMA:52801
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png
xref: MA:0002840
xref: MESH:A.01.456.830
xref: ncithesaurus:Base_of_the_Skull
xref: SCTID:181890004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0002522
name: tunica media
namespace: uberon
alt_id: UBERON:MA_0002855-FMA_55590
def: "The tunica media (or just media) (middle coat) is the middle layer of an artery or vein. [WP,unvetted]." [Wikipedia:Tunica_media]
comment: todo - check BTO
subset: uberon_slim
synonym: "tunica media vasorum" RELATED [BTO:0002011]
xref: BTO:0002011
xref: FMA:55590
xref: GAID:170
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg
xref: MA:0002855
xref: MESH:A.02.633.570.491.800
xref: ncithesaurus:Tunica_Media
xref: SCTID:61695000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004237 {source="ncithesaurus"} ! blood vessel smooth muscle
is_a: UBERON:0004797 {source="MA"} ! blood vessel layer
relationship: surrounded_by UBERON:0005734 ! tunica adventitia

[Term]
id: UBERON:0002523
name: tunica intima
namespace: uberon
alt_id: UBERON:MA_0002861-FMA_55589
def: "The tunica intima (or just intima) is the innermost layer of an artery or vein. It is made up of one layer of endothelial cells and is supported by an internal elastic lamina. The endothelial cells are in direct contact with the blood flow. The inner coat (tunica intima) can be separated from the middle by a little maceration, or it may be stripped off in small pieces; but, on account of its friability, it cannot be separated as a complete membrane. It is a fine, transparent, colorless structure which is highly elastic, and, after death, is commonly corrugated into longitudinal wrinkles. The inner coat consists of: A layer of pavement endothelium, the cells of which are polygonal, oval, or fusiform, and have very distinct round or oval nuclei. This endothelium is brought into view most distinctly by staining with silver nitrate. A subendothelial layer, consisting of delicate connective tissue with branched cells lying in the interspaces of the tissue; in arteries of less than 2 mm. in diameter the subendothelial layer consists of a single stratum of stellate cells, and the connective tissue is only largely developed in vessels of a considerable size. An elastic or fenestrated layer, which consists of a membrane containing a net-work of elastic fibers, having principally a longitudinal direction, and in which, under the microscope, small elongated apertures or perforations may be seen, giving it a fenestrated appearance. It was therefore called by Henle the fenestrated membrane. This membrane forms the chief thickness of the inner coat, and can be separated into several layers, some of which present the appearance of a network of longitudinal elastic fibers, and others a more membranous character, marked by pale lines having a longitudinal direction. In minute arteries the fenestrated membrane is a very thin layer; but in the larger arteries, and especially in the aorta, it has a very considerable thickness. [WP,unvetted]." [Wikipedia:Tunica_intima]
comment: todo - check BTO
subset: uberon_slim
synonym: "tunica intima vasorum" RELATED [BTO:0002012]
xref: BTO:0002012
xref: FMA:55589
xref: GAID:523
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg
xref: MA:0002861
xref: MESH:A.07.231.330.800
xref: ncithesaurus:Tunica_Intima
xref: SCTID:8361002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004797 {source="MA"} ! blood vessel layer
relationship: surrounded_by UBERON:0002522 ! tunica media

[Term]
id: UBERON:0002529
name: limb segment
namespace: uberon
alt_id: UBERON:MA_0002889-FMA_9661
def: "A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [UBERON:cjm]
comment: note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z
synonym: "free limb segment" EXACT [FMA:241863]
synonym: "limb region" EXACT []
synonym: "region of limb" EXACT []
synonym: "segment of limb" EXACT []
synonym: "subdivision of limb" EXACT []
xref: FMA:241863
xref: MA:0002889
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010538 ! limb/fin segment
intersection_of: UBERON:0010758 ! appendage segment
intersection_of: part_of UBERON:0002101 ! limb
disjoint_from: UBERON:0010912 ! subdivision of skeleton
relationship: existence_ends_during UBERON:0000066 ! fully formed stage
relationship: existence_starts_during UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0002530
name: gland
namespace: uberon
alt_id: UBERON:MIAA_0000021
def: "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland]
comment: none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue.
subset: uberon_slim
synonym: "Druese" RELATED [BTO:0000522]
synonym: "glandula" RELATED [BTO:0000522]
xref: AAO:0000212
xref: AEO:0000096
xref: BTO:0000522
xref: EFO:0000797
xref: EHDAA2:0003096
xref: EHDAA:2161
xref: EHDAA:2181
xref: EHDAA:2967
xref: EHDAA:4475
xref: EHDAA:6522
xref: EMAPA:18425
xref: FMA:86294
xref: galen:Gland
xref: HAO:0000375
xref: MAT:0000021
xref: MIAA:0000021
xref: ncithesaurus:Gland
xref: OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA
xref: SCTID:134358001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
relationship: secretes UBERON:0000463 ! portion of organism substance

[Term]
id: UBERON:0002531
name: fin bud
namespace: uberon
alt_id: UBERON:MIAA_0000062-ZFA_0001383
def: "the mesenchymal outgrowth on the lateral trunk of the embryo that develops into a paired fin[MP, modified]." [UBERON:cjm]
xref: EFO:0003468
xref: MAT:0000062
xref: MIAA:0000062
xref: TAO:0001383
xref: VAO:0000179
xref: ZFA:0001383
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004357 ! limb/fin bud
relationship: develops_from UBERON:0005731 {evidence="definitional"} ! fin field

[Term]
id: UBERON:0002532
name: epiblast
namespace: uberon
alt_id: UBERON:MIAA_0000067-ZFA_0000018
def: "In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]" [Wikipedia:Epiblast, ZFIN:curator]
comment: MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. In HOG, epiblast is part of primitive streak/blastpore, which is inconsistent with the MP definition of primitive streak as a ridge of the epiblast. Note that these terms, epiblast and hypoblast, are also used to describe layers of the avian embryonic blastoderm, but the layers so-named seem to be altogether different in these two kinds of vertebrate embryos(CVS). Consider obsoleting this as a grouping class
subset: early_development
subset: grouping_class
subset: uberon_slim
subset: vertebrate_core
synonym: "blastocyst" RELATED []
synonym: "ectoblast" RELATED [MP:0003886]
synonym: "primitive ectoderm" RELATED [VHOG:0000243]
xref: BTO:0004593
xref: MAT:0000067
xref: MIAA:0000067
xref: VHOG:0000243
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure

[Term]
id: UBERON:0002533
name: tail bud
namespace: uberon
alt_id: UBERON:MIAA_0000070-XAO_0000107-ZFA_0000077
def: "The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node." [BTO:0001445]
comment: Editor notes: See notes from UBERONREF:0000002
subset: uberon_slim
subset: vertebrate_core
synonym: "end bud" RELATED [BTO:0001445]
synonym: "tail bud mesenchyme " RELATED [ZFA:0000077]
synonym: "tailbud" EXACT []
xref: AAO:0011104
xref: BTO:0001445
xref: EFO:0002748
xref: EHDAA2:0001976
xref: EHDAA:1595
xref: EMAPA:16580
xref: MAT:0000070
xref: MIAA:0000070
xref: TAO:0000077
xref: VHOG:0000201
xref: XAO:0000107
xref: ZFA:0000077
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0002534
name: paired fin
namespace: uberon
alt_id: UBERON:MIAA_0000087-XAO_0000002-ZFA_0000108
def: "Fin that is one of a pair located ventrally on the organism." [TAO:wd]
subset: uberon_slim
synonym: "pelvic/pectoral fin" EXACT [UBERON:cjm]
xref: TAO:0002278
xref: ZFA:0005596
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004708 ! limb/fin
is_a: UBERON:0008897 {source="ZFA"} ! fin
relationship: develops_from UBERON:0002531 {source="ZFA"} ! fin bud

[Term]
id: UBERON:0002539
name: pharyngeal arch
namespace: uberon
alt_id: UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306
def: "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch]
comment: Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering
subset: uberon_slim
subset: vertebrate_core
synonym: "branchial arch" NARROW [BTO:0001785, MP:0002884]
synonym: "pharyngeal arches" EXACT PLURAL []
synonym: "visceral arch" RELATED []
xref: AAO:0010359
xref: BTO:0001785
xref: EFO:0000959
xref: EHDAA:571
xref: EMAPA:16117
xref: GAID:1292
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png
xref: MAT:0000242
xref: MESH:A.16.254.160
xref: MIAA:0000242
xref: ncithesaurus:Pharyngeal_Arch
xref: SCTID:308766004
xref: TAO:0001306
xref: VAO:0000149
xref: VHOG:0000155
xref: XAO:0000096
xref: ZFA:0001306
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: induced_by UBERON:0007690 {source="PMID:16313389"} ! early pharyngeal endoderm
relationship: part_of UBERON:0008814 ! pharyngeal system
relationship: part_of UBERON:0008816 {source="PMID:16313389"} ! embryonic head

[Term]
id: UBERON:0002544
name: digit
namespace: uberon
alt_id: UBERON:MIAA_0000285-XAO_0003035-XAO_0003036
def: "one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]." [Wikipedia:Digit_(anatomy)]
comment: todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution].
subset: uberon_slim
synonym: "limb digit" EXACT [MA:0000690]
xref: EFO:0000881
xref: FMA:85518
xref: galen:Digit
xref: MA:0000690
xref: MAT:0000285
xref: MIAA:0000285
xref: ncithesaurus:Digit
xref: OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA
xref: SCTID:361367007
xref: VHOG:0000944
xref: XAO:0003032
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005881 ! limb outgrowth
relationship: part_of UBERON:0002470 ! autopod region

[Term]
id: UBERON:0002546
name: cranial placode
namespace: uberon
alt_id: UBERON:MIAA_0000369-XAO_0000305
def: "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4, UBERON:cjm]
comment: Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
synonym: "placode" BROAD [Wikipedia:Placode]
xref: AAO:0010466
xref: MAT:0000369
xref: MIAA:0000369
xref: XAO:0000305
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0002548
name: larva
namespace: uberon
alt_id: UBERON:MIAA_0000400-FBbt_00001727
def: "a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva]
comment: This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms
subset: uberon_slim
synonym: "ammocoete" NARROW [Wikipedia:Larva]
synonym: "bipinnaria" NARROW [Wikipedia:Larva]
synonym: "caterpillar" NARROW [Wikipedia:Larva]
synonym: "glochidium" NARROW [Wikipedia:Larva]
synonym: "grub" NARROW [Wikipedia:Larva]
synonym: "leptocephalus" NARROW [Wikipedia:Larva]
synonym: "maggot" NARROW [Wikipedia:Larva]
synonym: "naiad" NARROW [Wikipedia:Larva]
synonym: "naupilus" NARROW [Wikipedia:Larva]
synonym: "nymph" NARROW [Wikipedia:Larva]
synonym: "planula" NARROW [Wikipedia:Larva]
synonym: "tadpole" NARROW [Wikipedia:Larva]
synonym: "trochophore" NARROW [Wikipedia:Larva]
synonym: "veliger" NARROW [Wikipedia:Larva]
synonym: "wriggler" NARROW [Wikipedia:Larva]
synonym: "zoea" NARROW [Wikipedia:Larva]
xref: AEO:0000126
xref: BTO:0000707
xref: FBbt:00001727
xref: HAO:0000459
xref: MIAA:0000400
xref: OpenCyc:Mx4rwQCBvZwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000468 ! multi-cellular organism
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000069 ! larval stage
relationship: existence_starts_and_ends_during UBERON:0000069 ! larval stage

[Term]
id: UBERON:0002553
name: anatomical cavity
namespace: uberon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552
def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
synonym: "cavity" EXACT []
xref: EHDAA:2329
xref: EHDAA:2337
xref: EHDAA:2347
xref: EHDAA:293
xref: EHDAA:4741
xref: EHDAA:48
xref: EHDAA:638
xref: EHDAA:644
xref: EMAPA:16054
xref: FMA:67552
xref: galen:Cavity
xref: ncithesaurus:Lumen_Space
xref: NIF_GrossAnatomy:birnlex_1011
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
relationship: location_of UBERON:0000463 ! portion of organism substance

[Term]
id: UBERON:0002558
name: organ cavity
namespace: uberon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1019-FMA_12237
synonym: "cavity of organ" EXACT [FMA:12237]
xref: FMA:12237
xref: NIF_GrossAnatomy:birnlex_1019
xref: SCTID:362606005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity

[Term]
id: UBERON:0002616
name: regional part of brain
namespace: uberon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676
def: "An anatomical structure that is part of a brain [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure" EXACT [OBOL:automatic]
synonym: "brain biological structure" EXACT [OBOL:automatic]
synonym: "brain part" EXACT []
synonym: "neuraxis segment" EXACT [FMA:55676]
synonym: "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167]
xref: FMA:55676
xref: ncithesaurus:Brain_Part
xref: NIF_GrossAnatomy:birnlex_1167
xref: SCTID:384763002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain

[Term]
id: UBERON:0002962
name: adductor pollicis
namespace: uberon
def: "In human anatomy, the adductor pollicis muscle is a muscle in the hand that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]." [Wikipedia:Adductor_pollicis_muscle]
synonym: "adductor pollicis muscle" EXACT [Wikipedia:Adductor_pollicis_muscle]
xref: FMA:37380
xref: SCTID:181649004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000952 {source="Obol"} ! adductor muscle
is_a: UBERON:0001500 ! muscle of hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0002988
name: first dorsal interosseous of hand
namespace: uberon
synonym: "abductor indicis" EXACT [FMA:37424]
xref: FMA:37424
xref: SCTID:245003002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001503 {source="FMA"} ! dorsal interosseous of hand

[Term]
id: UBERON:0002989
name: anconeus
namespace: uberon
def: "small muscle on the posterior aspect of the elbow joint." [Wikipedia:Anconeus_muscle]
comment: Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm.
synonym: "anconeus muscle" EXACT [Wikipedia:Anconeus_muscle]
xref: FMA:37704
xref: SCTID:244993003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle

[Term]
id: UBERON:0003037
name: septum
namespace: uberon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_963-FMA_86461
def: "a wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum]
comment: general anatomical term in FMA
synonym: "septa" EXACT PLURAL []
xref: BM:Tel-Spt
xref: FMA:86461
xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002553 ! anatomical cavity

[Term]
id: UBERON:0003050
name: olfactory placode
namespace: uberon
alt_id: UBERON:XAO_0000005-ZFA_0000048
def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [Wikipedia:Olfactory_placode, XAO:0000005]
comment: Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest.
subset: uberon_slim
subset: vertebrate_core
synonym: "nasal placode" RELATED []
synonym: "olfactory placodes" EXACT PLURAL []
xref: AAO:0011076
xref: EFO:0003420
xref: EHDAA2:0001232
xref: EHDAA:1504
xref: EMAPA:16543
xref: TAO:0000048
xref: VHOG:0000186
xref: XAO:0000005
xref: ZFA:0000048
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007497 {source="EHDAA2"} ! developing epithelial placode
is_a: UBERON:0009955 {source="ZFA"} ! neurogenic placode
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0003051
name: ear vesicle
namespace: uberon
alt_id: UBERON:0004373
alt_id: UBERON:XAO_0000006-ZFA_0000051
def: "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Auditory_vesicle, ZFIN:curator]
subset: vertebrate_core
synonym: "auditory vesicle" RELATED [BTO:0002661]
synonym: "otic vesicle" EXACT []
synonym: "otocyst" RELATED []
synonym: "OV" RELATED []
xref: AAO:0011080
xref: BTO:0002661
xref: EHDAA2:0001342
xref: EMAPA:16669
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png
xref: ncithesaurus:Otic_Vesicle
xref: SCTID:308792006
xref: TAO:0000051
xref: VHOG:0001148
xref: XAO:0000006
xref: ZFA:0000051
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005085 ! ectodermal placode
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0007497 ! developing epithelial placode
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_into UBERON:0001846 ! internal ear
intersection_of: part_of UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0009123 {source="NBK53175"} ! otic cup
relationship: develops_into UBERON:0001846 ! internal ear
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000924 ! ectoderm

[Term]
id: UBERON:0003055
name: periderm
namespace: uberon
alt_id: UBERON:XAO_0000029-ZFA_0001185
def: "A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis." [ISBN:9780878932504]
comment: Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html)
subset: uberon_slim
synonym: "epidermis epithelial layer" RELATED []
synonym: "epidermis outer layer" RELATED []
synonym: "EVL" RELATED [ZFA:0001185]
synonym: "periderm" RELATED []
xref: EHDAA2:0001846
xref: EHDAA:6538
xref: ncithesaurus:Periderm
xref: TAO:0001185
xref: VHOG:0001680
xref: XAO:0000029
xref: ZFA:0001185
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0007383 ! enveloping layer of ectoderm

[Term]
id: UBERON:0003056
name: pre-chordal neural plate
namespace: uberon
alt_id: UBERON:XAO_0000045-ZFA_0007016
def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior neural plate" RELATED []
xref: AAO:0011084
xref: TAO:0007016
xref: VHOG:0001200
xref: XAO:0000045
xref: ZFA:0007016
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: anterior_to UBERON:0009774 ! embryonic midbrain hindbrain boundary
relationship: part_of UBERON:0003075 ! neural plate

[Term]
id: UBERON:0003057
name: chordal neural plate
namespace: uberon
alt_id: UBERON:XAO_0000046-ZFA_0007017
def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "posterior neural plate" RELATED []
xref: TAO:0007017
xref: VHOG:0001201
xref: XAO:0000046
xref: ZFA:0007017
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0003075 ! neural plate
relationship: posterior_to UBERON:0009774 ! embryonic midbrain hindbrain boundary

[Term]
id: UBERON:0003059
name: presomitic mesoderm
namespace: uberon
alt_id: UBERON:XAO_0000057-ZFA_0000279
def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a>" [ZFIN:curator]
synonym: "presumptive somite mesoderm" RELATED []
synonym: "PSM" RELATED []
synonym: "segmental plate" EXACT []
synonym: "somitogenic mesoderm" RELATED []
synonym: "unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
xref: AAO:0011086
xref: EFO:0001982
xref: TAO:0000279
xref: VHOG:0000559
xref: XAO:0000057
xref: ZFA:0000279
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0007282 {evidence="definitional"} ! presumptive segmental plate
relationship: part_of UBERON:0003077 ! paraxial mesoderm

[Term]
id: UBERON:0003060
name: pronephric duct
namespace: uberon
alt_id: UBERON:XAO_0000063-ZFA_0000150
def: "In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct]
subset: uberon_slim
synonym: "archinephric duct" RELATED [VHOG:0000082]
xref: AAO:0011088
xref: ncithesaurus:Pronephric_Duct
xref: SCTID:361406002
xref: TAO:0000150
xref: VHOG:0000082
xref: XAO:0000063
xref: ZFA:0000150
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009201 {source="GO"} ! nephric duct
relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm
relationship: develops_from UBERON:0005721 {source="XAO"} ! pronephric mesoderm
relationship: part_of UBERON:0002120 ! pronephros

[Term]
id: UBERON:0003061
name: blood island
namespace: uberon
alt_id: UBERON:XAO_0000067-ZFA_0000094
def: "Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP]. Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates[XAO]. Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension[ZFA]." [PMID:9618755, Wikipedia:Blood_island, XAO:0000067, ZFIN:curator]
comment: Note EHDAA2 distinguishes 3 types - we opt for the mesoderm one
subset: uberon_slim
subset: vertebrate_core
synonym: "blood island of umbilical vesicle" EXACT [Wikipedia:Blood_island]
synonym: "blood islands" EXACT PLURAL []
synonym: "caudal hematopoietic tissue" RELATED []
synonym: "insula sanguinea vesiculae umbilicalis" EXACT [Wikipedia:Blood_island]
synonym: "mesoderm blood islands" EXACT [EHDAA2:0003241]
synonym: "posterior blood island" RELATED []
synonym: "posterior ICM" RELATED []
synonym: "VBI" RELATED []
synonym: "ventral blood island" RELATED []
synonym: "ventral lateral plate mesoderm" BROAD []
xref: AAO:0011006
xref: EFO:0003489
xref: EHDAA2:0003241
xref: ncithesaurus:Blood_Island
xref: TAO:0000094
xref: TE:E5.11.2.0.0.0.4
xref: VHOG:0000085
xref: XAO:0000067
xref: ZFA:0000094
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
relationship: develops_into UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0003063
name: prechordal plate
namespace: uberon
alt_id: UBERON:XAO_0000079-ZFA_0000060
def: "a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells[GO]. Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region[ZFA]. Uniquely thickened portion of the endoderm that is in contact with ectoderm immediately rostral to the cephalic tip of the notochord[WP]." [Wikipedia:Prechordal_plate, ZFIN:curator]
comment: todo - check
subset: uberon_slim
subset: vertebrate_core
synonym: "head mesenchyme" BROAD [XAO:0000079]
synonym: "head mesoderm" BROAD [XAO:0000079]
xref: AAO:0011085
xref: EHDAA2:0001493
xref: EHDAA:181
xref: TAO:0000060
xref: VHOG:0000086
xref: XAO:0000079
xref: ZFA:0000060
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003068 ! axial mesoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000925 ! endoderm
relationship: part_of UBERON:0004341 ! primitive streak

[Term]
id: UBERON:0003064
name: intermediate mesoderm
namespace: uberon
alt_id: UBERON:XAO_0000085-ZFA_0001206
def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm]
comment: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm').
subset: uberon_slim
subset: vertebrate_core
synonym: "IM" RELATED []
synonym: "intermediate mesenchyme" RELATED [UBERONREF:0000002]
synonym: "intermediate plate mesoderm" RELATED [UBERON:cjm]
xref: AAO:0010575
xref: EMAPA:16178
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Intermediate_Mesoderm
xref: SCTID:361476001
xref: TAO:0001206
xref: VHOG:0000087
xref: XAO:0000085
xref: ZFA:0001206
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: adjacent_to UBERON:0003077 ! paraxial mesoderm
relationship: adjacent_to UBERON:0003081 ! lateral plate mesoderm
relationship: develops_from UBERON:0000926 {source="XAO"} ! mesoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000926 {source="AAO"} ! mesoderm
relationship: part_of UBERON:0005256 {source="EMAPA"} ! trunk mesenchyme

[Term]
id: UBERON:0003066
name: hyoid arch
namespace: uberon
alt_id: UBERON:XAO_0000098-ZFA_0001276
def: "assists in forming the side and front of the neck." [Wikipedia:Second_branchial_arch]
comment: In XAO, develops from visceral pouch 2
subset: uberon_slim
subset: vertebrate_core
synonym: "2nd arch" RELATED [EHDAA2:0000050]
synonym: "2nd pharyngeal arch" EXACT []
synonym: "branchial arch 2" EXACT SENSU []
synonym: "hyoid bars" RELATED []
synonym: "pharyngeal arch 2" EXACT []
synonym: "second branchial arch" EXACT SENSU []
synonym: "second pharyngeal arch" EXACT []
synonym: "second visceral arch" EXACT SENSU []
synonym: "visceral arch 2" EXACT SENSU []
xref: AAO:0010363
xref: EHDAA2:0000050
xref: EHDAA:611
xref: EMAPA:16272
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png
xref: ncithesaurus:Second_Pharyngeal_Arch
xref: SCTID:308768003
xref: TAO:0001596
xref: VHOG:0000297
xref: XAO:0000098
xref: ZFA:0001611
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002539 ! pharyngeal arch

[Term]
id: UBERON:0003067
name: dorsolateral placode
namespace: uberon
alt_id: UBERON:XAO_0000187-ZFA_0001310
def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator]
synonym: "dorsolateral placodes" EXACT PLURAL [ZFA:0001310]
xref: TAO:0001310
xref: VHOG:0000103
xref: XAO:0000187
xref: ZFA:0001310
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode
relationship: dorsal_to UBERON:0003078 ! epibranchial placode

[Term]
id: UBERON:0003068
name: axial mesoderm
namespace: uberon
alt_id: UBERON:XAO_0000205-ZFA_0001204
def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "chordamesoderm" RELATED [Wikipedia:Chordamesoderm]
xref: AAO:0011017
xref: EFO:0003647
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: TAO:0001204
xref: VHOG:0000107
xref: XAO:0000205
xref: ZFA:0001204
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0003069
name: otic placode
namespace: uberon
alt_id: UBERON:XAO_0000223-ZFA_0000138
def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175]
comment: With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175]
subset: uberon_slim
subset: vertebrate_core
synonym: "auditory placode" RELATED []
synonym: "ear placode" RELATED []
synonym: "ear/otic placode" RELATED []
xref: AAO:0011079
xref: EFO:0003429
xref: EHDAA2:0001339
xref: EHDAA:506
xref: EMAPA:16195
xref: ncithesaurus:Otic_Placodes
xref: TAO:0000138
xref: VHOG:0000235
xref: XAO:0000223
xref: ZFA:0000138
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003067 ! dorsolateral placode
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
relationship: part_of UBERON:0001690 ! ear

[Term]
id: UBERON:0003071
name: eye primordium
namespace: uberon
alt_id: UBERON:0005060
alt_id: UBERON:XAO_0000227-ZFA_0000570
def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
comment: AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium
synonym: "eye anlage" RELATED [XAO:0000227]
synonym: "eye field" RELATED []
synonym: "eye placode" EXACT [OBOL:automatic]
synonym: "occular primordium" EXACT []
synonym: "ocular primordium" EXACT []
synonym: "optic field" RELATED []
synonym: "optic placode" EXACT [GO:0046619]
synonym: "optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm]
synonym: "optic primordium" EXACT []
xref: AAO:0011038
xref: EFO:0003541
xref: EHDAA2:0004431
xref: TAO:0000570
xref: XAO:0000227
xref: XAO:0004090
xref: ZFA:0000570
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005085 ! ectodermal placode
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000019 ! camera-type eye
relationship: develops_from UBERON:0003056 ! pre-chordal neural plate
relationship: develops_into UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0003056 {source="PMID:16496288", source="XAO"} ! pre-chordal neural plate

[Term]
id: UBERON:0003072
name: optic cup
namespace: uberon
alt_id: UBERON:XAO_0000228-ZFA_0001202
def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [:Optic_cup_(embryology), MP:0004269, ZFA:0001202]
subset: vertebrate_core
synonym: "eye cup" RELATED []
xref: EHDAA2:0001303
xref: EHDAA:2912
xref: EMAPA:16674
xref: ncithesaurus:Optic_Cup
xref: SCTID:308789007
xref: TAO:0001202
xref: VHOG:0000167
xref: ZFA:0001202
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0004128 {source="ZFA"} ! optic vesicle
relationship: induced_by UBERON:0003073 ! lens placode
relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye

[Term]
id: UBERON:0003073
name: lens placode
namespace: uberon
alt_id: UBERON:XAO_0000240-ZFA_0000122
def: "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [Wikipedia:Lens_placode, ZFIN:curator]
comment: Classical transplantation experiments using amphibian embryos suggested that the optic vesicle is the source of lens-inducing signals sufficient to generate lens tissues in competent ectoderm (reviewed in Grainger et al., 1996). More recent findings suggest a multistep model for lens induction. There is now good evidence that lens specification occurs at the neurula stage, before the optic vesicle contact the surface ectoderm, and that neural crest cell migration in the frontonasal region is required to restrict the position of the lens placode (Bailey et al., 2006)[NBK53175]
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0011055
xref: EFO:0003494
xref: EHDAA2:0000982
xref: EHDAA:2908
xref: EMAPA:16672
xref: ncithesaurus:Lens_Placodes
xref: TAO:0000122
xref: VHOG:0000166
xref: XAO:0000240
xref: ZFA:0000122
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002546 {source="NBK53175", note="non-neurogenic"} ! cranial placode
is_a: UBERON:0010312 ! immature eye
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000965 ! lens of camera-type eye
relationship: develops_into UBERON:0000965 ! lens of camera-type eye
relationship: induced_by UBERON:0004128 ! optic vesicle
relationship: part_of UBERON:0000076 ! external ectoderm
relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye

[Term]
id: UBERON:0003074
name: mesonephric duct
namespace: uberon
alt_id: UBERON:XAO_0000242-ZFA_0000546
def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator]
comment: TODO - mesonephric portion of the nephric duct. Development notes: In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts.
subset: uberon_slim
subset: vertebrate_core
synonym: "archinephric duct" RELATED [VHOG:0000082, Wikipedia:Wolffian_duct]
synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct]
synonym: "renal duct" RELATED []
synonym: "Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546]
xref: AAO:0000637
xref: EHDAA2:0001243
xref: EHDAA:1590
xref: EMAPA:16577
xref: GAID:1315
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: MESH:A.16.254.940
xref: ncithesaurus:Mesonephric_Duct
xref: SCTID:308800003
xref: TAO:0000546
xref: VHOG:0000082
xref: XAO:0000242
xref: ZFA:0000546
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0009201 {source="GO"} ! nephric duct
relationship: develops_from UBERON:0003060 ! pronephric duct
relationship: part_of UBERON:0000080 ! mesonephros

[Term]
id: UBERON:0003075
name: neural plate
namespace: uberon
alt_id: UBERON:XAO_0000249-ZFA_0000132
def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]" [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "presumptive central nervous system" RELATED []
xref: AAO:0011072
xref: BTO:0001765
xref: EHDAA:346
xref: EHDAA:902
xref: EMAPA:16095
xref: EMAPA:16527
xref: EMAPA:16756
xref: ncithesaurus:Neural_Plate
xref: RETIRED_EHDAA2:0001252
xref: TAO:0000132
xref: VHOG:0000068
xref: XAO:0000249
xref: ZFA:0000132
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 {source="GO"} ! epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: develops_from UBERON:0007284 {source="ZFA"} ! presumptive neural plate
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002346 {source="XAO"} ! neurectoderm

[Term]
id: UBERON:0003076
name: posterior neural tube
namespace: uberon
alt_id: UBERON:XAO_0000250-ZFA_0007037
comment: This class was created automatically from a combination of ontologies
xref: AAO:0011082
xref: TAO:0007037
xref: VHOG:0001383
xref: XAO:0000250
xref: ZFA:0007037
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003057 ! chordal neural plate
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube

[Term]
id: UBERON:0003077
name: paraxial mesoderm
namespace: uberon
alt_id: UBERON:XAO_0000259-ZFA_0000255
def: "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm]
comment: AO notes: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here)
subset: uberon_slim
subset: vertebrate_core
synonym: "paraxial mesenchyme" EXACT [UBERONREF:0000002, ZFA:0000255]
synonym: "somitic mesoderm" EXACT [ISBN:9780878932504]
xref: AAO:0010568
xref: EFO:0003515
xref: EMAPA:16183
xref: EMAPA:16751
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Paraxial_Mesoderm
xref: SCTID:361475002
xref: TAO:0000255
xref: VHOG:0000114
xref: XAO:0000259
xref: ZFA:0000255
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: develops_from UBERON:0007285 {source="ZFA"} ! presumptive paraxial mesoderm
relationship: part_of UBERON:0000926 {source="XAO"} ! mesoderm

[Term]
id: UBERON:0003078
name: epibranchial placode
namespace: uberon
alt_id: UBERON:XAO_0000284-ZFA_0001294
def: "Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear/otic placode and dorsally to the posterior pharyngeal pouches/clefts" [ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31]
comment: Epibranchial placodes-derived neu- rons innervate internal organs to transmit information such as heart rate, blood pressure, and visceral distension from the periphery to the central nervous system (Baker and Bronner-Fraser, 2001). From rostral to caudal the epibranchial placodes comprise the geniculate, petrosal, and nodose placodes, each associated in sequence with the first, second and third branchial clefts. Each placode contributes sensory neurons to cranial nerves VII (facial nerve), IX (glossopharyngeal nerve), and X (vagal nerve), respectively[NBK53175]
synonym: "epibranchial placodes" EXACT PLURAL [ZFA:0001294]
xref: AAO:0011036
xref: EFO:0003455
xref: TAO:0001294
xref: VHOG:0000117
xref: XAO:0000284
xref: ZFA:0001294
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode
relationship: develops_from UBERON:0003067 ! dorsolateral placode
relationship: part_of UBERON:0000010 ! peripheral nervous system
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0003081
name: lateral plate mesoderm
namespace: uberon
alt_id: UBERON:XAO_0000311-ZFA_0000121
def: "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
subset: uberon_slim
synonym: "lateral mesoderm" EXACT [GO:0048368]
synonym: "lateral plate" RELATED []
xref: AAO:0010574
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Lateral_Mesoderm
xref: SCTID:361477005
xref: TAO:0000121
xref: VHOG:0000118
xref: XAO:0000311
xref: ZFA:0000121
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
relationship: surrounds UBERON:0003887 ! intraembryonic coelom

[Term]
id: UBERON:0003082
name: myotome
namespace: uberon
alt_id: UBERON:XAO_0000315-ZFA_0001056
def: "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
comment: Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
subset: uberon_slim
subset: vertebrate_core
synonym: "muscle plate" RELATED []
synonym: "myomere" RELATED []
synonym: "myotome region" RELATED []
synonym: "myotomes" RELATED []
xref: AAO:0011067
xref: BTO:0000742
xref: EHDAA2:0003431
xref: EHDAA:1721
xref: EHDAA:1727
xref: EHDAA:1733
xref: EHDAA:1739
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png
xref: ncithesaurus:Myotome_Region
xref: SCTID:344535001
xref: TAO:0001056
xref: VHOG:0001244
xref: XAO:0000315
xref: ZFA:0001056
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0004290 {source="EHDAA2"} ! dermomyotome
relationship: part_of UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0003084
name: heart primordium
namespace: uberon
alt_id: UBERON:XAO_0000336-ZFA_0000028
def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator]
comment: editor note: should probably be fused with heart rudiment.
subset: uberon_slim
synonym: "fused heart primordium" RELATED []
xref: AAO:0011044
xref: BTO:0001887
xref: ncithesaurus:Primordium_of_the_Heart
xref: TAO:0000028
xref: XAO:0000336
xref: ZFA:0000028
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 {source="Obol"} ! primordium
relationship: develops_from UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm
relationship: develops_from UBERON:0004140 ! heart field
relationship: develops_from UBERON:0007005 {source="XAO"} ! cardiac mesoderm
relationship: part_of UBERON:0004535 {source="ZFA"} ! cardiovascular system

[Term]
id: UBERON:0003089
name: sclerotome
namespace: uberon
alt_id: UBERON:XAO_0000397-ZFA_0001080
def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." [Wikipedia:Sclerotome, XB:curator]
comment: AO notes: part_of somite in XAO
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010571
xref: EHDAA2:0003439
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png
xref: ncithesaurus:Sclerotome
xref: TAO:0001080
xref: VHOG:0000680
xref: XAO:0000397
xref: ZFA:0001080
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005856 {source="EHDAA2"} ! mesenchymal condensation
is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population
relationship: develops_from UBERON:0002329 {source="ZFA"} ! somite

[Term]
id: UBERON:0003099
name: cranial neural crest
namespace: uberon
alt_id: UBERON:XAO_0001001-ZFA_0001194
def: "The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "cephalic neural crest" RELATED [EMAPA:16091]
synonym: "head crest" RELATED []
synonym: "head neural crest" RELATED []
xref: AAO:0010580
xref: EFO:0003645
xref: EHDAA2:0004420
xref: EMAPA:16091
xref: TAO:0001194
xref: VHOG:0000063
xref: XAO:0001001
xref: ZFA:0001194
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0002342 ! neural crest

[Term]
id: UBERON:0003100
name: female organism
namespace: uberon
alt_id: UBERON:XAO_0003005-ZFA_0000303
def: "Gonochoristic organism that can produce female gametes." [CARO:0000028]
subset: vertebrate_core
synonym: "female" RELATED [TAO:0000303]
synonym: "female human body" NARROW SENSU [FMA:67812]
xref: AAO:0010030
xref: BILA:0000028
xref: CARO:0000028
xref: FBbt:00007011
xref: FMA:67812
xref: HAO:0000028
xref: TAO:0000303
xref: TGMA:0001839
xref: XAO:0003005
xref: ZFA:0000303
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000468 ! multi-cellular organism
disjoint_from: UBERON:0003101 ! male organism

[Term]
id: UBERON:0003101
name: male organism
namespace: uberon
alt_id: UBERON:XAO_0003006-ZFA_0000242
def: "Gonochoristic organism that can produce male gametes." [CARO:0000027]
subset: vertebrate_core
synonym: "male" RELATED [TAO:0000242]
synonym: "male human body" NARROW SENSU [FMA:67811]
xref: AAO:0010033
xref: BILA:0000027
xref: CARO:0000027
xref: FBbt:00007004
xref: FMA:67811
xref: HAO:0000027
xref: TAO:0000242
xref: TGMA:0001838
xref: WBbt:0007850
xref: XAO:0003006
xref: ZFA:0000242
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0003102
name: surface structure
namespace: uberon
alt_id: UBERON:XAO_0003028-ZFA_0000292
def: "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [https://github.com/cmungall/uberon/issues/24, VAO:0000001, Wikipedia:Surface_structure, ZFA:0000292]
subset: uberon_slim
subset: vertebrate_core
synonym: "anatomical surface feature" EXACT [EHDAA2:0003010]
xref: AAO:0010337
xref: AEO:0000010
xref: EHDAA2:0003010
xref: TAO:0000292
xref: VAO:0000001
xref: XAO:0003028
xref: ZFA:0000292
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: overlaps UBERON:0007376 ! outer epithelial layer

[Term]
id: UBERON:0003103
name: compound organ
namespace: uberon
alt_id: UBERON:XAO_0003041-ZFA_0000496
def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024]
subset: organ_slim
subset: upper_level
synonym: "organ" RELATED []
xref: AAO:0010015
xref: AEO:0000024
xref: BILA:0000024
xref: CARO:0000024
xref: EHDAA2:0003024
xref: HAO:0000024
xref: NIF_GrossAnatomy:birnlex_4
xref: TADS:0000598
xref: TAO:0000496
xref: TGMA:0001837
xref: XAO:0003041
xref: ZFA:0000496
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ

[Term]
id: UBERON:0003104
name: mesenchyme
namespace: uberon
alt_id: UBERON:XAO_0003046-ZFA_0000393
def: "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator]
comment: Editors notes: the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense
subset: uberon_slim
subset: vertebrate_core
synonym: "mesenchymal tissue" EXACT []
synonym: "mesenchyme tissue" EXACT []
synonym: "portion of mesenchymal tissue" EXACT []
synonym: "portion of mesenchyme tissue" EXACT []
xref: AAO:0010427
xref: AEO:0000145
xref: BTO:0001393
xref: EHDAA2:0003145
xref: EV:0100007
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Mesenchymal_Stem_Cell.jpg/200px-Mesenchymal_Stem_Cell.jpg
xref: ncithesaurus:Mesenchyme
xref: TAO:0000393
xref: VHOG:0000170
xref: XAO:0003046
xref: ZFA:0000393
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
relationship: has_developmental_contribution_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0009142 ! entire mesenchyme

[Term]
id: UBERON:0003106
name: urostyle
namespace: uberon
alt_id: UBERON:XAO_0003080-ZFA_0000158
def: "In teleosts: Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra[AAO]; Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord[AAO]." [AAO:0000732, TAO:0000158]
comment: In zebrafish, it is composed of preural vertebra 1 and ural centra 1 and 2. The number of ural centra that become fused with preural centrum 1 varies among teleost subgroups. Because of varying developmental origins the urostyle may not be homologous across species.[TAO]. Grouping with AAO dubious
subset: uberon_slim
synonym: "compound centrum" RELATED []
synonym: "last vertebra" RELATED []
synonym: "ultimate vertebra" RELATED []
xref: AAO:0000732
xref: TAO:0000158
xref: XAO:0003080
xref: ZFA:0000158
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002090 ! postcranial axial skeleton

[Term]
id: UBERON:0003107
name: Meckel's cartilage
namespace: uberon
alt_id: UBERON:XAO_0003085-ZFA_0001205
def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage]
subset: uberon_slim
subset: vertebrate_core
synonym: "Meckels cartilage" EXACT []
synonym: "ventral mandibular cartilage" EXACT [ZFA:0001205]
xref: AAO:0000289
xref: EHDAA2:0001072
xref: EHDAA:7997
xref: EMAPA:17635
xref: EMAPA:17907
xref: MA:0001580
xref: SCTID:308773009
xref: TAO:0001205
xref: VHOG:0000249
xref: XAO:0003085
xref: ZFA:0001205
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0006263 ! Meckel's cartilage pre-cartilage condensation
relationship: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0004362 ! mandibular arch

[Term]
id: UBERON:0003108
name: suspensorium
namespace: uberon
alt_id: UBERON:XAO_0003086-ZFA_0000444
comment: This class was created automatically from a combination of ontologies
synonym: "hyopalatine" RELATED []
synonym: "suspensoria" RELATED []
xref: AAO:0000596
xref: TAO:0000444
xref: XAO:0003086
xref: ZFA:0000444
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0003129 ! skull

[Term]
id: UBERON:0003109
name: parapophysis
namespace: uberon
alt_id: UBERON:XAO_0003102-ZFA_0001362
def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator]
comment: TODO - check
subset: uberon_slim
synonym: "lateral process of basiventral" RELATED []
xref: AAO:0000698
xref: AAO:0000708
xref: TAO:0001362
xref: XAO:0003102
xref: ZFA:0001362
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001077 ! transverse process of vertebra
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0002513 ! endochondral bone

[Term]
id: UBERON:0003110
name: otic region
namespace: uberon
alt_id: UBERON:ZFA_0000189-XAO_0003175
synonym: "cranial vault" RELATED [ZFA:0000189]
xref: AAO:0010208
xref: TAO:0000189
xref: XAO:0003175
xref: ZFA:0000189
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0003111
name: sphenoid region
namespace: uberon
alt_id: UBERON:ZFA_0000290-XAO_0003174
xref: AAO:0010207
xref: TAO:0000290
xref: XAO:0003174
xref: ZFA:0000290
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0003112
name: olfactory region
namespace: uberon
alt_id: UBERON:ZFA_0000351-XAO_0003172
def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ." [TAO:0000351]
synonym: "ethmoid region" EXACT [ZFA:0000351]
xref: AAO:0010206
xref: EFO:0003525
xref: ncithesaurus:Olfactory_Region
xref: TAO:0000351
xref: XAO:0003172
xref: ZFA:0000351
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0003113
name: dermatocranium
namespace: uberon
alt_id: UBERON:ZFA_0000863-XAO_0003169
def: "Bony parts of the skull derived from ossifications in the dermis of the skin[FD]." [http://encyclopedia2.thefreedictionary.com/dermatocranium, Wikipedia:Skull_roof]
synonym: "dermal bone cranium" EXACT [ZFA:0000863]
synonym: "roof of skull" EXACT [Wikipedia:Skull_roof]
synonym: "roofing bones of the skull" EXACT [Wikipedia:Skull_roof]
synonym: "skull roof" EXACT [Wikipedia:Skull_roof]
xref: AAO:0010154
xref: TAO:0000863
xref: XAO:0003169
xref: ZFA:0000863
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0003128 {source="ZFA"} ! cranium

[Term]
id: UBERON:0003114
name: pharyngeal arch 3
namespace: uberon
def: "The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus." [MP:0006339]
comment: in XAO, called branchial arch 1 and df VP3
subset: vertebrate_core
synonym: "3rd arch" RELATED [EHDAA2:0000069]
synonym: "3rd pharyngeal arch" EXACT []
synonym: "branchial arch 1" RELATED SENSU [AAO:0010365, ZFA:0001606]
synonym: "first branchial arch" RELATED SENSU [ZFA:0001606]
synonym: "first gill arch" EXACT SENSU [ZFA:0001606]
synonym: "gill arch 1" EXACT SENSU [ZFA:0001606]
synonym: "third branchial arch" EXACT SENSU []
synonym: "third pharyngeal arch" EXACT []
synonym: "third visceral arch" EXACT []
synonym: "visceral arch 3" EXACT []
xref: AAO:0010365
xref: EHDAA2:0000069
xref: EHDAA:1080
xref: EMAPA:16399
xref: SCTID:308769006
xref: TAO:0001598
xref: VHOG:0000298
xref: XAO:0000447
xref: ZFA:0001606
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002539 ! pharyngeal arch

[Term]
id: UBERON:0003115
name: pharyngeal arch 4
namespace: uberon
def: "contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus" [MP:0006340]
comment: in XAO, called branchial arch 2 and df VP4
subset: uberon_slim
subset: vertebrate_core
synonym: "4th arch" RELATED [EHDAA2:0000086]
synonym: "4th branchial arch" EXACT SENSU []
synonym: "4th pharyngeal arch" EXACT []
synonym: "4th visceral arch" EXACT []
synonym: "branchial arch 2" RELATED SENSU [AAO:0010366, ZFA:0001607]
synonym: "fourth branchial arch" EXACT SENSU []
synonym: "fourth pharyngeal arch" EXACT []
synonym: "gill arch 2" EXACT SENSU [ZFA:0001607]
synonym: "second branchial arch" RELATED SENSU [ZFA:0001607]
synonym: "second gill arch" EXACT SENSU [ZFA:0001607]
synonym: "visceral arch 4" EXACT []
xref: AAO:0010366
xref: EHDAA2:0000086
xref: EHDAA:1663
xref: EMAPA:16760
xref: SCTID:308770007
xref: TAO:0001599
xref: VHOG:0000299
xref: XAO:0000449
xref: ZFA:0001607
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002539 ! pharyngeal arch

[Term]
id: UBERON:0003117
name: pharyngeal arch 6
namespace: uberon
alt_id: UBERON:0004349
alt_id: UBERON:ZFA_0001609-XAO_0000453
def: "The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles" [MP:0006347]
synonym: "6th arch" EXACT [EHDAA2:0004075]
synonym: "6th branchial arch" EXACT []
synonym: "branchial arch 4" RELATED SENSU [AAO:0010368, ZFA:0001609]
synonym: "branchial arch 6" EXACT []
synonym: "fourth branchial arch" RELATED SENSU []
synonym: "gill arch 4" EXACT [ZFA:0001609]
synonym: "sixth branchial arch" EXACT []
synonym: "sixth visceral arch" RELATED [XAO:0000453]
synonym: "visceral arch 6" EXACT [ZFA:0001609]
xref: AAO:0010368
xref: EHDAA2:0004075
xref: SCTID:308772004
xref: TAO:0001601
xref: VHOG:0001205
xref: XAO:0000453
xref: ZFA:0001609
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002539 ! pharyngeal arch

[Term]
id: UBERON:0003126
name: trachea
namespace: uberon
def: "A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea]
comment: In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx.
subset: major_organ
subset: uberon_slim
synonym: "cartilaginous trachea" EXACT []
synonym: "tracheal tubule" RELATED [BTO:0001388]
synonym: "vertebrate trachea" EXACT SENSU []
synonym: "windpipe" EXACT []
xref: AAO:0010140
xref: BTO:0001388
xref: EFO:0000935
xref: EHDAA2:0002066
xref: EHDAA:3078
xref: EMAPA:16853
xref: EV:0100040
xref: FMA:7394
xref: GAID:361
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000441
xref: MAT:0000137
xref: MESH:A.04.889
xref: MIAA:0000137
xref: ncithesaurus:Trachea
xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA
xref: SCTID:181213009
xref: VHOG:0000371
xref: XAO:0000118
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001005 ! respiratory airway
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium
relationship: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0007196 ! tracheobronchial tree

[Term]
id: UBERON:0003128
name: cranium
namespace: uberon
def: "Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
comment: The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
subset: uberon_slim
subset: vertebrate_core
synonym: "bones of cranium" EXACT [FMA:71325]
synonym: "calvarium" RELATED [BTO:0001328]
synonym: "cranial skeleton" RELATED []
synonym: "epicranial plate" RELATED []
synonym: "ossa cranii" EXACT [FMA:71325, FMA:TA]
synonym: "skeletal system of head" RELATED []
xref: BILA:0000115
xref: BTO:0001328
xref: EFO:0000831
xref: EHDAA2:0000325
xref: EHDAA:6029
xref: EMAPA:17680
xref: FMA:71325
xref: MA:0000316
xref: MAT:0000340
xref: MIAA:0000340
xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
xref: SCTID:181889008
xref: TAO:0000737
xref: VHOG:0000334
xref: XAO:0003075
xref: ZFA:0000737
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0001684
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0003129 ! skull

[Term]
id: UBERON:0003129
name: skull
namespace: uberon
def: "The 4 components of the vertebrate skull are the cartilaginous neurocranium, cartilaginous viscero- cranium, dermal skull roof, and sclerotomal occipital region[PMID]. Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, PMID:11523816, Wikipedia:Skull]
comment: In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP].
subset: uberon_slim
synonym: "cranial skeleton" RELATED []
synonym: "skeletal system of head" RELATED []
xref: AAO:0000109
xref: AAO:0010185
xref: BTO:0001295
xref: FMA:46565
xref: GAID:82
xref: galen:Skull
xref: MESH:A.02.835.232.781
xref: ncithesaurus:Skull
xref: OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: has_part UBERON:0001684 ! mandible
relationship: has_part UBERON:0003128 ! cranium
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0005944 ! axial skeleton

[Term]
id: UBERON:0003133
name: reproductive organ
namespace: uberon
def: "An organ involved in reproduction" [UBERON:xp]
comment: GO uses genitalia for the singular organ
subset: functional_classification
subset: organ_slim
synonym: "genital organ" EXACT []
synonym: "genitalia" RELATED PLURAL []
synonym: "reproductive system organ" EXACT []
synonym: "sex organ" EXACT []
xref: EMAPA:17381
xref: MA:0001752
xref: MESH:A.05.360
xref: ncithesaurus:Genitalia
xref: OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA
xref: SCTID:128181006
xref: TGMA:0000591
xref: WBbt:0008422
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000990 ! reproductive system

[Term]
id: UBERON:0003134
name: female reproductive organ
namespace: uberon
def: "A female organ involved in reproduction" [UBERON:xp]
subset: organ_slim
synonym: "female organism reproductive organ" EXACT [OBOL:automatic]
synonym: "female organism reproductive structure" EXACT [OBOL:automatic]
synonym: "female organism reproductive system organ" EXACT [OBOL:automatic]
synonym: "female organism sex organ" EXACT [OBOL:automatic]
synonym: "female reproductive system organ" EXACT []
synonym: "female sex organ" EXACT []
synonym: "reproductive organ of female organism" EXACT [OBOL:automatic]
synonym: "reproductive structure of female organism" EXACT [OBOL:automatic]
synonym: "reproductive system organ of female organism" EXACT [OBOL:automatic]
synonym: "sex organ of female organism" EXACT [OBOL:automatic]
xref: EMAPA:17959
xref: MA:0000544
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003133 ! reproductive organ
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0003100 ! female organism

[Term]
id: UBERON:0003135
name: male reproductive organ
namespace: uberon
def: "A male organ involved in reproduction" [UBERON:xp]
subset: organ_slim
synonym: "male organism reproductive organ" EXACT [OBOL:automatic]
synonym: "male organism reproductive structure" EXACT [OBOL:automatic]
synonym: "male organism reproductive system organ" EXACT [OBOL:automatic]
synonym: "male organism sex organ" EXACT [OBOL:automatic]
synonym: "male reproductive system organ" EXACT []
synonym: "male sex organ" EXACT []
synonym: "reproductive organ of male organism" EXACT [OBOL:automatic]
synonym: "reproductive structure of male organism" EXACT [OBOL:automatic]
synonym: "reproductive system organ of male organism" EXACT [OBOL:automatic]
synonym: "sex organ of male organism" EXACT [OBOL:automatic]
xref: EMAPA:17968
xref: MA:0000545
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003133 ! reproductive organ
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003101 ! male organism
relationship: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0003101 ! male organism

[Term]
id: UBERON:0003215
name: alveolus
namespace: uberon
def: "organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus]
xref: EFO:0002513
xref: EV:0100043
xref: FMA:82493
xref: ncithesaurus:Alveolus
xref: OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part

[Term]
id: UBERON:0003216
name: hard palate
namespace: uberon
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "anterior portion of the palate consisting of bone and mucous membranes[GO]." [GO:0060022, Wikipedia:Hard_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hard palate" EXACT []
xref: EMAPA:18952
xref: FMA:55023
xref: GAID:221
xref: MA:0002477
xref: MAT:0000161
xref: MESH:A.02.835.232.781.324.502.660
xref: MIAA:0000161
xref: ncithesaurus:Hard_Palate
xref: SCTID:245778002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0003220
name: metanephric mesenchyme
namespace: uberon
def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]" [GO:0072075, Wikipedia:Metanephric_blastema]
comment: Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"]
synonym: "metanephric blastema" EXACT [Wikipedia:Metanephric_blastema]
synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema]
synonym: "metanephrogenic mesenchyme" EXACT [EHDAA:5021]
synonym: "metanephros associated mesenchyme" EXACT [RETIRED_EHDAA2:0001139]
xref: EHDAA2:0004062
xref: EHDAA:4041
xref: EHDAA:5021
xref: EHDAA:5915
xref: EMAPA:17208
xref: EMAPA:17375
xref: EMAPA:29990
xref: SCTID:361529008
xref: VHOG:0000540
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003918 ! kidney mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_into UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0003074 ! mesonephric duct
relationship: develops_into UBERON:0000081 ! metanephros
relationship: induced_by UBERON:0000084 {source="ISBN:9780878932504"} ! ureteric bud
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0003221
name: phalanx
namespace: uberon
def: "Endochondral bones that are often elongate and arranged in rows of articulating elements, and form the visible part of the digits." [VAO:0000199, Wikipedia:Phalanx_bones]
comment: Taxon notes: In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP]
synonym: "digit long bone" EXACT [OBOL:automatic]
synonym: "long bone of digit" EXACT [OBOL:automatic]
synonym: "phalanges" EXACT PLURAL []
synonym: "phalanx bone" EXACT [Wikipedia:Phalanx_bones]
xref: galen:Phalanx
xref: MA:0000304
xref: ncithesaurus:Phalanx
xref: OpenCyc:Mx4rvolPZpwpEbGdrcN5Y29ycA
xref: SCTID:290029003
xref: VAO:0000199
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003606 ! limb long bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002544 ! digit
relationship: develops_from UBERON:0010701 ! phalanx cartilage condensation
relationship: part_of UBERON:0002544 ! digit
relationship: part_of UBERON:0006717 ! skeleton of autopod

[Term]
id: UBERON:0003222
name: flexor digitorum superficialis
namespace: uberon
def: "an extrinsic flexor muscle of the fingers at the proximal interphalangeal joints. The muscle has two classically described heads - the humeroulnar and radial - and it is between these heads that the median nerve and ulnar artery pass. The ulnar collateral ligament of elbow joint gives its origin to part of this muscle. The primary function of flexor digitorum superficialis is flexion of the middle phalanges of the fingers at the proximal interphalangeal joints, however under continued action it also flexes the metacarpophalangeal joints and wrist joint[WP]." [Wikipedia:Flexor_digitorum_superficialis_muscle]
synonym: "flexor digitorum superficialis muscle" EXACT [Wikipedia:Flexor_digitorum_superficialis_muscle]
xref: FMA:38469
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle

[Term]
id: UBERON:0003228
name: supinator
namespace: uberon
def: "a broad muscle in the posterior compartment of the forearm, curved around the upper third of the radius. Its function is to supinate the forearm." [Wikipedia:Supinator]
comment: TODO: The term "supinator" can also refer more generally to a muscle that causes supination of a part of the body. In older texts, the term "supinator longus" was used to refer to the brachioradialis, and "supinator brevis" was used to the muscle now known as the supinator.
synonym: "supinator muscle" EXACT [FMA:75002]
xref: FMA:38512
xref: FMA:75002
xref: SCTID:181634007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle

[Term]
id: UBERON:0003234
name: extensor pollicis longus
namespace: uberon
def: "The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers." [Wikipedia:Extensor_pollicis_longus_muscle]
synonym: "extensor pollicis longis" RELATED [Wikipedia:Extensor_pollicis_longus_muscle]
synonym: "extensor pollicis longus muscle" EXACT [Wikipedia:Extensor_pollicis_longus_muscle]
xref: FMA:38521
xref: SCTID:361820003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle

[Term]
id: UBERON:0003235
name: epithelium of upper jaw
namespace: uberon
def: "An epithelium that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "epithelial tissue of upper jaw" EXACT [OBOL:automatic]
synonym: "epithelium of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch epithelial tissue" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch epithelium" EXACT [OBOL:automatic]
synonym: "upper jaw epithelial tissue" EXACT [OBOL:automatic]
synonym: "upper jaw epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0002119
xref: EHDAA:8027
xref: EMAPA:17943
xref: EMAPA:18971
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0003236
name: epithelium of lower jaw
namespace: uberon
def: "An epithelium that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lower jaw" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "epithelium of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower jaw epithelium" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch epithelial tissue" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001019
xref: EHDAA:7999
xref: EMAPA:17922
xref: EMAPA:18968
xref: VHOG:0000802
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0003243
name: epithelium of cochlear duct
namespace: uberon
def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Obol]." [OBOL:automatic]
synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct epithelium" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic]
synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4722
xref: EMAPA:17600
xref: RETIRED_EHDAA2:0000264
xref: VHOG:0000640
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006937 ! inner ear epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0003250
name: rectus capitis lateralis
namespace: uberon
def: "The Rectus capitis lateralis, a short, flat muscle, arises from the upper surface of the transverse process of the atlas, and is inserted into the under surface of the jugular process of the occipital bone." [Wikipedia:Rectus_capitis_lateralis_muscle]
subset: organ_slim
synonym: "lateral rectus capitis" EXACT [FMA:46316]
synonym: "rectus capitis lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle]
synonym: "rectus capitus lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle]
synonym: "rectus capitus lateralis muscle" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle]
xref: FMA:46316
xref: SCTID:244841001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column

[Term]
id: UBERON:0003252
name: rib cage
namespace: uberon
def: "A bony and cartilaginous structure which surrounds the thoracic (chest) cavity and supports the pectoral (shoulder) girdle, forming a core portion of the human skeleton. A typical human rib cage consists of 24 ribs, the sternum, costal cartilages, and the 12 thoracic vertebrae. It, along with the skin and associated fascia and muscles, makes up the thoracic wall, and provides attachments for the muscles of the neck, thorax, upper abdomen, and back. The human rib cage is a component of the human respiratory system. It encloses the thoracic cavity, which contains the lungs. An inhalation is accomplished when the muscular diaphragm, at the floor of the thoracic cavity, contracts and flattens, while contraction of intercostal muscles lift the rib cage up and out. These actions produce an increase in volume, and a resulting partial vacuum, or negative pressure, in the thoracic cavity, resulting in atmospheric pressure pushing air into the lungs, inflating them. An exhalation results when the diaphragm and intercostal muscles relax, and elastic recoil of the rib cage and lungs expels the air." [Wikipedia:Human_rib_cage]
comment: todo - add child terms
synonym: "cavea thoracis" EXACT [FMA:7480, FMA:TA]
synonym: "thoracic cage" EXACT [FMA:7480]
xref: FMA:7480
xref: galen:RibCage
xref: SCTID:361741004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
relationship: part_of UBERON:0000915 {source="FMA"} ! thoracic segment of trunk

[Term]
id: UBERON:0003253
name: neck of rib
namespace: uberon
def: "The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs." [Wikipedia:Neck_of_rib]
synonym: "collum costae" EXACT [Wikipedia:Neck_of_rib]
synonym: "rib neck" EXACT [FMA:7576]
xref: FMA:7576
xref: SCTID:263359009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001560 ! neck of organ
intersection_of: part_of UBERON:0002228 ! rib
relationship: part_of UBERON:0002228 ! rib

[Term]
id: UBERON:0003258
name: endoderm of foregut
namespace: uberon
def: "An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "foregut endoderm" EXACT [OBOL:automatic]
xref: EHDAA2:0000566
xref: EHDAA:524
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0003267
name: tooth of upper jaw
namespace: uberon
def: "A calcareous tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "calcareous tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "calcareous tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch calcareous tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch dentine containing tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "upper jaw calcareous tooth" EXACT [OBOL:automatic]
synonym: "upper jaw dentine containing tooth" EXACT [OBOL:automatic]
synonym: "upper jaw tooth" EXACT [OBOL:automatic]
synonym: "upper jaw vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of upper jaw" EXACT [OBOL:automatic]
xref: EHDAA2:0002129
xref: EHDAA:8045
xref: EMAPA:17938
xref: MA:0001909
xref: ncithesaurus:Upper_Jaw_Tooth
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001091 ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0009680 ! set of upper jaw teeth

[Term]
id: UBERON:0003268
name: tooth of lower jaw
namespace: uberon
def: "A calcareous tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "calcareous tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic]
synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic]
synonym: "lower jaw tooth" EXACT [OBOL:automatic]
synonym: "lower jaw vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch calcareous tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch dentine containing tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of ventral mandibular arch" EXACT [OBOL:automatic]
xref: EHDAA2:0001029
xref: EHDAA:8009
xref: EMAPA:17917
xref: MA:0001907
xref: ncithesaurus:Lower_Jaw_Tooth
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001091 ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0009679 ! set of lower jaw teeth

[Term]
id: UBERON:0003269
name: skeletal muscle of eye
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a eye [Obol]." [OBOL:automatic]
synonym: "eye skeletal muscle" EXACT [OBOL:automatic]
synonym: "eye skeletal muscle group" RELATED [EHDAA2:0000486]
synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic]
xref: EHDAA2:0000486
xref: EHDAA:2923
xref: EMAPA:17844
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003899 ! skeletal muscle of head
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0003270
name: skeletal muscle of leg
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a tetrapod leg [Obol]." [OBOL:automatic]
synonym: "leg skeletal muscle" EXACT [OBOL:automatic]
synonym: "leg skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of leg" EXACT [OBOL:automatic]
xref: EHDAA:8291
xref: EMAPA:19144
xref: EMAPA:19318
xref: RETIRED_EHDAA2:0000974
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0003271
name: skeletal muscle of pelvic girdle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a pelvic girdle [Obol]." [OBOL:automatic]
synonym: "girdle-pelvic skeletal muscle" EXACT [OBOL:automatic]
synonym: "girdle-pelvic skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone skeletal muscle" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "pelvic girdle skeletal muscle" EXACT [OBOL:automatic]
synonym: "pelvic girdle skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "skeletal muscle of pelvic girdle bone" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pelvic girdle" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pelvic girdle bone" EXACT [OBOL:automatic]
xref: EHDAA:8326
xref: EMAPA:18185
xref: RETIRED_EHDAA2:0001430
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0001271 ! pelvic girdle region

[Term]
id: UBERON:0003272
name: skeletal muscle of arm
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm skeletal muscle" EXACT [OBOL:automatic]
synonym: "arm skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "brachial region skeletal muscle" EXACT [OBOL:automatic]
synonym: "brachial region skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skeletal muscle" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of brachial region" EXACT [OBOL:automatic]
synonym: "skeletal muscle of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of arm" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of brachial region" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: EHDAA:8277
xref: EMAPA:19107
xref: RETIRED_EHDAA2:0000142
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm

[Term]
id: UBERON:0003273
name: skeletal muscle of tongue
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0002065
xref: EHDAA:9146
xref: EMAPA:17883
xref: EMAPA:18879
xref: MA:0001596
xref: ncithesaurus:Tongue_Skeletal_Muscle_Tissue
xref: VHOG:0001390
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003899 ! skeletal muscle of head
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001723 ! tongue
relationship: develops_from UBERON:0005594 {source="ISBN10:1607950324"} ! head somite
relationship: part_of UBERON:0000378 ! tongue muscle
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003276
name: skeleton of embryo
namespace: uberon
def: "A skeletal system that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue set of all bones" EXACT [OBOL:automatic]
synonym: "developmental tissue set of bones of body" EXACT [OBOL:automatic]
synonym: "developmental tissue skeletal system" EXACT [OBOL:automatic]
synonym: "developmental tissue skeleton" EXACT [OBOL:automatic]
synonym: "developmental tissue skeleton system" EXACT [OBOL:automatic]
synonym: "embryo set of all bones" EXACT [OBOL:automatic]
synonym: "embryo set of bones of body" EXACT [OBOL:automatic]
synonym: "embryo skeletal system" EXACT [OBOL:automatic]
synonym: "embryo skeleton" EXACT [OBOL:automatic]
synonym: "embryo skeleton system" EXACT [OBOL:automatic]
synonym: "set of all bones of developmental tissue" EXACT [OBOL:automatic]
synonym: "set of all bones of embryo" EXACT [OBOL:automatic]
synonym: "set of bones of body of developmental tissue" EXACT [OBOL:automatic]
synonym: "set of bones of body of embryo" EXACT [OBOL:automatic]
synonym: "skeletal system of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeletal system of embryo" EXACT [OBOL:automatic]
synonym: "skeleton of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeleton system of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeleton system of embryo" EXACT [OBOL:automatic]
xref: EHDAA:5047
xref: EMAPA:17213
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001434 ! skeletal system
is_a: UBERON:0002050 ! embryonic structure
intersection_of: UBERON:0001434 ! skeletal system
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0003277
name: skeleton of upper jaw
namespace: uberon
def: "A subdivision of skeleton that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of upper jaw" EXACT [OBOL:automatic]
synonym: "upper jaw subdivision of skeleton" EXACT [OBOL:automatic]
xref: AAO:0000622
xref: EHDAA2:0002128
xref: EHDAA:8041
xref: EMAPA:17927
xref: VHOG:0000429
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw
relationship: subdivision_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0003278
name: skeleton of lower jaw
namespace: uberon
def: "A subdivision of skeleton that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of lower jaw" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch subdivision of skeleton" EXACT [OBOL:automatic]
xref: AAO:0000274
xref: EHDAA2:0004606
xref: EHDAA:8005
xref: EMAPA:17910
xref: VHOG:0000428
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001704 {source="EHDAA2"} ! viscerocranium
relationship: part_of UBERON:0001710 ! lower jaw
relationship: subdivision_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0003281
name: mesentery of stomach
namespace: uberon
def: "The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium]
comment: todo - check primitive vs developed
synonym: "mesentery of ventriculus" EXACT [OBOL:automatic]
synonym: "mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium]
synonym: "mesogastium" EXACT [MA:0001617]
synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
synonym: "stomach mesentery" EXACT [Obol:obol]
synonym: "ventriculus mesentery" EXACT [OBOL:automatic]
xref: EHDAA2:0001922
xref: EHDAA:2999
xref: EMAPA:17024
xref: EMAPA:18902
xref: MA:0001617
xref: SCTID:261623000
xref: VHOG:0000358
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004854 {source="MA"} ! gastrointestinal system mesentery
is_a: UBERON:0009034 ! stomach region
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 {source="MA"} ! stomach

[Term]
id: UBERON:0003285
name: limb of embryo
namespace: uberon
def: "A limb that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue limb" EXACT [OBOL:automatic]
synonym: "embryo limb" EXACT [OBOL:automatic]
synonym: "embryonic limb" EXACT [OBOL:automatic]
synonym: "limb of developmental tissue" EXACT [OBOL:automatic]
xref: EHDAA:1697
xref: EMAPA:16405
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002101 ! limb
intersection_of: UBERON:0002101 ! limb
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0003294
name: gland of foregut
namespace: uberon
def: "A gland that is part of a foregut [Obol]." [OBOL:automatic]
synonym: "foregut gland" EXACT [OBOL:automatic]
xref: EHDAA2:0000567
xref: EHDAA:950
xref: EMAPA:16557
xref: VHOG:0000650
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003408 ! gland of gut
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001041 ! foregut

[Term]
id: UBERON:0003295
name: pharyngeal gland
namespace: uberon
def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [Biology-Online_Dictionary:http://www.biology-online.org/dictionary/]
subset: organ_slim
synonym: "glandulae pharyngeae" RELATED [BTO:0004849]
synonym: "pharynx gland" EXACT [EHDAA2:0001461]
xref: BTO:0004849
xref: EHDAA2:0001461
xref: EHDAA:2967
xref: FMA:55075
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003408 ! gland of gut
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 {source="BTO"} ! chordate pharynx

[Term]
id: UBERON:0003314
name: eye mesenchyme
namespace: uberon
comment: todo - change mesenchyme relationships to precursor_of
synonym: "mesenchyme of eye" EXACT [OBOL:automatic]
xref: EHDAA2:0000485
xref: EHDAA:2910
xref: EMAPA:16324
xref: EMAPA:16673
xref: EMAPA:17833
xref: EMAPA:17836
xref: VHOG:0001084
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009891 ! facial mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: develops_from UBERON:0009920 {source="EHDAA2"} ! optic neural crest
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0003317
name: mesenchyme of incisor
namespace: uberon
def: "A mesenchyme that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "incisor mesenchyme" EXACT [OBOL:automatic]
synonym: "incisor tooth mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of incisor tooth" EXACT [OBOL:automatic]
xref: EHDAA:8015
xref: EHDAA:8051
xref: EMAPA:17920
xref: EMAPA:17941
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001098 ! incisor tooth
relationship: part_of UBERON:0001098 ! incisor tooth

[Term]
id: UBERON:0003318
name: mesenchyme of elbow
namespace: uberon
def: "A mesenchyme that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "cubital region mesenchyme" EXACT [OBOL:automatic]
synonym: "elbow mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of cubital region" EXACT [OBOL:automatic]
xref: EHDAA2:0000432
xref: EHDAA:4170
xref: EHDAA:6216
xref: EMAPA:17416
xref: VHOG:0001075
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003859 ! forelimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001461 ! elbow

[Term]
id: UBERON:0003319
name: mesenchyme of carpal region
namespace: uberon
def: "Mesenchyme of the carpal region that conributes to the carpal skeleton." [UBERON:cjm]
synonym: "carpal region mesenchyme" EXACT [OBOL:automatic]
synonym: "carpus mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of wrist" EXACT [OBOL:automatic]
synonym: "wrist mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000220
xref: EHDAA:5200
xref: EMAPA:18485
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003859 ! forelimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0004452 ! carpal region

[Term]
id: UBERON:0003320
name: mesenchyme of hip
namespace: uberon
def: "A mesenchyme that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip mesenchyme" EXACT [OBOL:automatic]
synonym: "hip region mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of hip region" EXACT [OBOL:automatic]
synonym: "mesenchyme of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000786
xref: EHDAA:5157
xref: EHDAA:6182
xref: EMAPA:17492
xref: VHOG:0001029
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip

[Term]
id: UBERON:0003321
name: mesenchyme of knee
namespace: uberon
def: "A mesenchyme that is part of a knee [Obol]." [OBOL:automatic]
synonym: "knee mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000898
xref: EHDAA:5163
xref: EHDAA:6188
xref: EMAPA:17495
xref: VHOG:0001070
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003860 ! hindlimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee

[Term]
id: UBERON:0003322
name: mesenchyme of shoulder
namespace: uberon
def: "A mesenchyme that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "shoulder mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0001837
xref: EHDAA:4184
xref: EHDAA:6232
xref: EMAPA:17423
xref: VHOG:0001035
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder

[Term]
id: UBERON:0003323
name: mesenchyme of upper jaw
namespace: uberon
def: "A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch mesenchyme" EXACT [OBOL:automatic]
synonym: "upper jaw mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0002124
xref: EHDAA:8031
xref: EMAPA:17929
xref: VHOG:0001099
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009891 ! facial mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0003324
name: mesenchyme of lower jaw
namespace: uberon
def: "A mesenchyme that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0001024
xref: EHDAA:8003
xref: EMAPA:17916
xref: VHOG:0001069
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: develops_from UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0003327
name: mesenchyme of forearm
namespace: uberon
def: "A mesenchyme that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "arm middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "arm zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
synonym: "lower arm mesenchyme" EXACT [OBOL:automatic]
synonym: "lower segment of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of antebrachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of arm zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower segment of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000555
xref: EHDAA:4176
xref: EHDAA:6222
xref: EMAPA:17419
xref: VHOG:0000504
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003859 ! forelimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 {source="EMAPA"} ! forelimb zeugopod

[Term]
id: UBERON:0003328
name: mesenchyme of footplate
namespace: uberon
alt_id: UBERON:0005260
synonym: "foot plate mesenchyme" EXACT []
xref: EHDAA2:0000549
xref: EHDAA:5149
xref: EHDAA:6172
xref: EMAPA:17252
xref: VHOG_RETIRED:0001055
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006871 ! footplate
relationship: develops_from UBERON:0003412 {source="EHDAA2"} ! hindlimb/pelvic fin bud mesenchyme
relationship: part_of UBERON:0006871 ! footplate

[Term]
id: UBERON:0003350
name: epithelium of mucosa
namespace: uberon
def: "An epithelium that is part of a mucosa [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of mucosa" EXACT [OBOL:automatic]
synonym: "epithelial tissue of mucosa of organ" EXACT [OBOL:automatic]
synonym: "epithelial tissue of mucous membrane" EXACT [OBOL:automatic]
synonym: "epithelial tissue of organ mucosa" EXACT [OBOL:automatic]
synonym: "epithelium of mucosa of organ" EXACT [OBOL:automatic]
synonym: "epithelium of mucous membrane" EXACT [OBOL:automatic]
synonym: "epithelium of organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa epithelial tissue" EXACT [OBOL:automatic]
synonym: "mucosa epithelium" EXACT [OBOL:automatic]
synonym: "mucosa of organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "mucosa of organ epithelium" EXACT [OBOL:automatic]
synonym: "mucous membrane epithelial tissue" EXACT [OBOL:automatic]
synonym: "mucous membrane epithelium" EXACT [OBOL:automatic]
synonym: "organ mucosa epithelial tissue" EXACT [OBOL:automatic]
synonym: "organ mucosa epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18668
xref: EMAPA:18835
xref: EMAPA:18857
xref: EMAPA:18862
xref: EMAPA:18868
xref: EMAPA:18893
xref: EMAPA:18899
xref: EMAPA:18912
xref: EMAPA:18917
xref: EMAPA:18927
xref: EMAPA:18934
xref: EMAPA:18941
xref: EMAPA:19078
xref: EMAPA:26961
xref: EMAPA:26985
xref: EMAPA:27019
xref: EMAPA:27033
xref: EMAPA:27047
xref: EMAPA:27061
xref: EMAPA:27075
xref: EMAPA:27089
xref: EMAPA:27103
xref: EMAPA:27131
xref: EMAPA:27145
xref: EMAPA:27159
xref: EMAPA:27175
xref: EMAPA:27191
xref: EMAPA:27207
xref: EMAPA:27219
xref: EMAPA:27229
xref: EMAPA:27307
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000344 ! mucosa
relationship: part_of UBERON:0000344 ! mucosa

[Term]
id: UBERON:0003351
name: pharyngeal epithelium
namespace: uberon
def: "An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic]
synonym: "epithelium of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "pharynx epithelium" EXACT [OBOL:automatic]
xref: EMAPA:16708
xref: MA:0002725
xref: RETIRED_EHDAA2:0001460
xref: TAO:0001174
xref: XAO:0003202
xref: ZFA:0001174
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 {source="ZFA"} ! unilaminar epithelium
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm
relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx

[Term]
id: UBERON:0003353
name: epithelium of hindgut
namespace: uberon
def: "An epithelium that is part of a hindgut [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic]
synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic]
synonym: "hindgut epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000782
xref: EMAPA:16717
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003929 ! gut epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0003355
name: epithelium of incisor
namespace: uberon
def: "An epithelium that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic]
synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic]
synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic]
synonym: "incisor epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor epithelium" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17919
xref: EMAPA:17940
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001098 ! incisor tooth
relationship: part_of UBERON:0001098 ! incisor tooth

[Term]
id: UBERON:0003358
name: epithelium of soft palate
namespace: uberon
def: "An epithelium that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "soft palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18950
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003235 ! epithelium of upper jaw
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001733 ! soft palate
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0003368
name: epithelium of hard palate
namespace: uberon
def: "An epithelium that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic]
synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "hard palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18953
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003235 ! epithelium of upper jaw
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0003378
name: cardiac muscle of auricular region
namespace: uberon
synonym: "cardiac muscle tissue of auricle" EXACT [FMA:84279]
xref: EMAPA:17318
xref: EMAPA:17324
xref: FMA:84279
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0006618 ! atrium auricular region
relationship: part_of UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0006618 ! atrium auricular region

[Term]
id: UBERON:0003379
name: cardiac muscle of right atrium
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a right atrium [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right cardiac atrium" EXACT [OBOL:automatic]
xref: EHDAA2:0004155
xref: EMAPA:17326
xref: FMA:7282
xref: VHOG:0001227
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0002078 ! right atrium

[Term]
id: UBERON:0003380
name: cardiac muscle of left atrium
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a left atrium [Obol]." [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left cardiac atrium" EXACT [OBOL:automatic]
xref: EHDAA2:0004154
xref: EMAPA:17320
xref: FMA:7285
xref: VHOG:0001225
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002079 ! left atrium
relationship: part_of UBERON:0002079 ! left atrium

[Term]
id: UBERON:0003381
name: cardiac muscle of right ventricle
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic]
synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221]
xref: EMAPA:17342
xref: FMA:83452
xref: VHOG:0001236
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle

[Term]
id: UBERON:0003382
name: cardiac muscle of left ventricle
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic]
synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220]
xref: EMAPA:17339
xref: FMA:83453
xref: VHOG:0001234
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle

[Term]
id: UBERON:0003383
name: cardiac muscle of interventricular septum
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "interventricular septum myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "ventricular septum myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: EHDAA2:0004158
xref: EMAPA:17335
xref: FMA:84084
xref: VHOG:0000999
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum
is_a: UBERON:0004667 ! interventricular septum muscular part
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002094 ! interventricular septum
relationship: part_of UBERON:0002094 ! interventricular septum

[Term]
id: UBERON:0003384
name: skeletal muscle of pharynx
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic]
synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic]
xref: EMAPA:18963
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004830 ! respiratory system skeletal muscle
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0003385
name: skeletal muscle of mesenchyme
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a mesenchyme [Obol]." [OBOL:automatic]
synonym: "mesenchyme skeletal muscle" EXACT [OBOL:automatic]
synonym: "mesenchyme skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:19066
xref: EMAPA:19071
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0003104 ! mesenchyme

[Term]
id: UBERON:0003386
name: smooth muscle of eye
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a eye [Obol]." [OBOL:automatic]
synonym: "ocular smooth muscle" EXACT [MA:0001268]
xref: EMAPA:18807
xref: MA:0001268
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0003387
name: smooth muscle of trachea
namespace: uberon
alt_id: UBERON:0004244
def: "A portion of smooth muscle tissue that is part of a trachea [Obol]." [OBOL:automatic]
synonym: "trachea smooth muscle" EXACT [MA:0001863]
synonym: "tracheal smooth muscle" EXACT [BTO:0001391]
xref: BTO:0001391
xref: EMAPA:19192
xref: FMA:262010
xref: MA:0001863
xref: ncithesaurus:Trachea_Smooth_Muscle_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004233 ! lower respiratory tract smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea

[Term]
id: UBERON:0003389
name: mesothelium of diaphragm
namespace: uberon
def: "A mesothelium that is part of a diaphragm [Obol]." [OBOL:automatic]
synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic]
synonym: "diaphragm mesothelium" EXACT [OBOL:automatic]
synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic]
synonym: "meso-epithelium of thoracic diaphragm" EXACT [OBOL:automatic]
synonym: "mesothelium of thoracic diaphragm" EXACT [OBOL:automatic]
synonym: "thoracic diaphragm meso-epithelium" EXACT [OBOL:automatic]
synonym: "thoracic diaphragm mesothelium" EXACT [OBOL:automatic]
xref: EMAPA:18429
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001136 ! mesothelium
is_a: UBERON:0004807 ! respiratory system epithelium
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001103 ! diaphragm
relationship: part_of UBERON:0001103 ! diaphragm

[Term]
id: UBERON:0003406
name: cartilage of respiratory system
namespace: uberon
def: "A cartilage that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "respiratory system cartilage" EXACT [OBOL:automatic]
xref: EMAPA:18694
xref: MA:0001818
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0003407
name: cartilage of nasal septum
namespace: uberon
def: "A cartilage that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "cartilago septal nasi" EXACT [FMA:59503]
synonym: "nasal septum cartilage" EXACT [OBOL:automatic]
synonym: "septal nasal cartilage" EXACT [FMA:59503]
xref: EMAPA:25091
xref: FMA:59503
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001823 ! nasal cartilage
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001706 ! nasal septum
relationship: part_of UBERON:0001706 ! nasal septum

[Term]
id: UBERON:0003408
name: gland of gut
namespace: uberon
def: "A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract gland" EXACT [OBOL:automatic]
synonym: "gland of digestive tract" EXACT [OBOL:automatic]
synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut gland" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic]
xref: EMAPA:18815
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0003412
name: hindlimb/pelvic fin bud mesenchyme
namespace: uberon
synonym: "leg mesenchyme" EXACT [OBOL:automatic]
synonym: "lower limb bud mesenchyme" EXACT [EHDAA2:0001035]
synonym: "mesoderm pelvic fin bud" NARROW SENSU [ZFA:0001386]
synonym: "pelvic fin bud mesenchyme" NARROW SENSU []
xref: EHDAA2:0001035
xref: EMAPA:17255
xref: TAO:0001386
xref: ZFA:0001386
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010329 ! limb/fin bud mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005420 ! hindlimb/pelvic fin bud
relationship: part_of UBERON:0005420 ! hindlimb/pelvic fin bud

[Term]
id: UBERON:0003413
name: forelimb/pectoral fin bud mesenchyme
namespace: uberon
alt_id: UBERON:0005703
synonym: "arm mesenchyme" EXACT [OBOL:automatic]
synonym: "mesoderm pectoral fin bud" NARROW SENSU [ZFA:0000789]
synonym: "pectoral fin bud mesenchyme" NARROW SENSU []
synonym: "upper limb bud mesenchyme" EXACT [EHDAA2:0002135]
synonym: "wing mesenchyme" NARROW [OBOL:automatic]
xref: EHDAA2:0002135
xref: EHDAA:1703
xref: EMAPA:17244
xref: TAO:0000789
xref: ZFA:0000789
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010329 ! limb/fin bud mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005419 ! forelimb/pectoral fin bud
relationship: part_of UBERON:0005419 ! forelimb/pectoral fin bud

[Term]
id: UBERON:0003414
name: mesenchyme of mandible
namespace: uberon
def: "A mesenchyme that is part of a mandible [Obol]." [OBOL:automatic]
synonym: "bone of lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "bone of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
synonym: "bone organ of lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "bone organ of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
synonym: "lower jaw bone mesenchyme" EXACT [OBOL:automatic]
synonym: "lower jaw bone organ mesenchyme" EXACT [OBOL:automatic]
synonym: "mandible mesenchyme" EXACT [OBOL:automatic]
synonym: "mandibulla mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone of lower jaw" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone organ of lower jaw" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone organ of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower jaw bone" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower jaw bone organ" EXACT [OBOL:automatic]
synonym: "mesenchyme of mandibulla" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch bone" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch bone organ" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone mesenchyme" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17912
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003324 ! mesenchyme of lower jaw
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001684 ! mandible
relationship: part_of UBERON:0001684 ! mandible

[Term]
id: UBERON:0003417
name: mesenchyme of soft palate
namespace: uberon
def: "A mesenchyme that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "soft palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18951
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003323 ! mesenchyme of upper jaw
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001733 ! soft palate
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0003424
name: mesenchyme of hard palate
namespace: uberon
def: "A mesenchyme that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18954
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003323 ! mesenchyme of upper jaw
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0003449
name: tail intervertebral disc
namespace: uberon
def: "A intervertebral disk that is part of a tail [Obol]." [OBOL:automatic]
synonym: "intervertebral disc of post-vent region" EXACT [OBOL:automatic]
synonym: "intervertebral disc of tail" EXACT [OBOL:automatic]
synonym: "intervertebral disk of post-vent region" EXACT [OBOL:automatic]
synonym: "intervertebral disk of tail" EXACT [OBOL:automatic]
synonym: "post-vent region intervertebral disc" EXACT [OBOL:automatic]
synonym: "post-vent region intervertebral disk" EXACT [OBOL:automatic]
synonym: "post-vent region spinal disc" EXACT [OBOL:automatic]
synonym: "spinal disc of post-vent region" EXACT [OBOL:automatic]
synonym: "spinal disc of tail" EXACT [OBOL:automatic]
synonym: "tail intervertebral disk" EXACT [OBOL:automatic]
synonym: "tail spinal disc" EXACT [OBOL:automatic]
xref: EMAPA:19592
xref: MA:0000698
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001066 ! intervertebral disk
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail

[Term]
id: UBERON:0003450
name: upper jaw incisor
namespace: uberon
def: "A incisor tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor of upper jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor tooth" EXACT [OBOL:automatic]
synonym: "upper incisor" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "upper jaw incisor tooth" EXACT [OBOL:automatic]
synonym: "upper primary incisor tooth" NARROW [FMA:84214]
xref: EHDAA2:0002121
xref: EMAPA:17939
xref: FMA:55712
xref: MA:0001601
xref: ncithesaurus:Upper_Jaw_Incisor
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001098 ! incisor tooth
is_a: UBERON:0003267 ! tooth of upper jaw
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0003451
name: lower jaw incisor
namespace: uberon
def: "A incisor tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "incisor of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower incisor" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "lower jaw incisor tooth" EXACT [OBOL:automatic]
synonym: "lower primary incisor tooth" NARROW [FMA:84215]
synonym: "mandibular incisor" EXACT [BTO:0001942]
synonym: "ventral mandibular arch incisor" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch incisor tooth" EXACT [OBOL:automatic]
xref: BTO:0001942
xref: EHDAA2:0001021
xref: EMAPA:17918
xref: FMA:55713
xref: MA:0001600
xref: ncithesaurus:Lower_Jaw_Incisor
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001098 ! incisor tooth
is_a: UBERON:0003268 ! tooth of lower jaw
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0003452
name: trabecula carnea cardiac muscle tissue
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: FMA:84428
xref: MA:0002833
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002511 ! trabecula carnea
relationship: part_of UBERON:0002511 ! trabecula carnea

[Term]
id: UBERON:0003456
name: respiratory system lymphatic vessel
namespace: uberon
def: "A lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic]
xref: MA:0001824
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001473 ! lymphatic vessel
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0003457
name: head bone
namespace: uberon
def: "A bone that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head bone" EXACT [OBOL:automatic]
synonym: "adult head bone organ" EXACT [OBOL:automatic]
synonym: "bone of adult head" EXACT [OBOL:automatic]
synonym: "bone of head" EXACT [OBOL:automatic]
synonym: "bone organ of adult head" EXACT [OBOL:automatic]
synonym: "bone organ of head" EXACT [OBOL:automatic]
synonym: "head bone organ" EXACT [OBOL:automatic]
xref: MA:0000576
xref: SCTID:118646007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007914 ! head or neck bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0003458
name: neck bone
namespace: uberon
def: "A bone that is part of a neck [Obol]." [OBOL:automatic]
synonym: "bone of neck" EXACT [OBOL:automatic]
synonym: "bone of neck (volume)" EXACT [OBOL:automatic]
synonym: "bone organ of neck" EXACT [OBOL:automatic]
synonym: "bone organ of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) bone" EXACT [OBOL:automatic]
synonym: "neck (volume) bone organ" EXACT [OBOL:automatic]
synonym: "neck bone organ" EXACT [OBOL:automatic]
xref: MA:0000584
xref: OpenCyc:Mx4rvnpJSJwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007914 ! head or neck bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck

[Term]
id: UBERON:0003459
name: chest bone
namespace: uberon
def: "A bone that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region bone" EXACT [OBOL:automatic]
synonym: "anterior thoracic region bone organ" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax bone" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax bone organ" EXACT [OBOL:automatic]
synonym: "bone of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "bone of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "bone of chest" EXACT [OBOL:automatic]
synonym: "bone of front of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "bone organ of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of chest" EXACT [OBOL:automatic]
synonym: "bone organ of front of thorax" EXACT [OBOL:automatic]
synonym: "chest bone organ" EXACT [OBOL:automatic]
synonym: "front of thorax bone" EXACT [OBOL:automatic]
synonym: "front of thorax bone organ" EXACT [OBOL:automatic]
xref: MA:0000547
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003827 ! thoracic segment bone
is_a: UBERON:0005175 ! chest organ
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest

[Term]
id: UBERON:0003460
name: arm bone
namespace: uberon
def: "A bone that is part of the region of the forelimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia" [UBERON:cjm]
synonym: "arm bone organ" EXACT [OBOL:automatic]
synonym: "bone of arm" EXACT [OBOL:automatic]
synonym: "bone of brachial region" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of upper extremity" EXACT [GAID:178]
synonym: "bone organ of arm" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region bone" EXACT [OBOL:automatic]
synonym: "brachial region bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
xref: MA:0000592
xref: OpenCyc:Mx4rwKTXoJwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008962 ! forelimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001440 ! forelimb skeleton
relationship: part_of UBERON:0001460 ! arm

[Term]
id: UBERON:0003461
name: shoulder bone
namespace: uberon
def: "A bone that is part of a shoulder [Obol]." [OBOL:automatic]
comment: AO notes: this is a forelimb bone in MA, but this would lead to part-disjointness violations. Subtypes are clavicle, scapula, humerus
synonym: "bone of shoulder" EXACT [OBOL:automatic]
synonym: "bone organ of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder bone organ" EXACT [OBOL:automatic]
xref: MA:0000631
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007829 ! pectoral girdle bone
is_a: UBERON:0010741 {notes="UBERONREF:0000003", source="MA"} ! bone of pectoral complex
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle

[Term]
id: UBERON:0003462
name: viscerocranium bone
namespace: uberon
def: "A bone that is part of a viscerocranium [Obol]." [OBOL:automatic]
comment: Editors note: test whether 'facial bone' is an exact synonym
synonym: "bone of facial skeleton" EXACT [OBOL:automatic]
synonym: "bone of splanchnocranium" EXACT [OBOL:automatic]
synonym: "bone of viscerocranium" EXACT [OBOL:automatic]
synonym: "facial bone" EXACT [EMAPA:19019]
synonym: "facial skeleton bone" EXACT [OBOL:automatic]
xref: EMAPA:19019
xref: MA:0001482
xref: ncithesaurus:Facial_Bone
xref: SCTID:181799005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001704 ! viscerocranium
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0003463
name: trunk bone
namespace: uberon
def: "A bone that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "bone of torso" EXACT [OBOL:automatic]
synonym: "bone of trunk" EXACT [OBOL:automatic]
synonym: "bone organ of torso" EXACT [OBOL:automatic]
synonym: "bone organ of trunk" EXACT [OBOL:automatic]
synonym: "torso bone" EXACT [OBOL:automatic]
synonym: "torso bone organ" EXACT [OBOL:automatic]
synonym: "trunk bone organ" EXACT [OBOL:automatic]
xref: MA:0000512
xref: SCTID:427358002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0005177 ! trunk organ
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0003464
name: hindlimb bone
namespace: uberon
def: "A bone that is part of a hindlimb region. Examples: any foot phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)" [UBERON:cjm]
comment: Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc
synonym: "bone of hind limb" EXACT [OBOL:automatic]
synonym: "bone of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of inferior member" EXACT [OBOL:automatic]
synonym: "bone of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb bone" EXACT [OBOL:automatic]
synonym: "hind limb bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "inferior member bone" EXACT [OBOL:automatic]
synonym: "inferior member bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity bone" EXACT [OBOL:automatic]
synonym: "lower extremity bone organ" EXACT [OBOL:automatic]
xref: EFO:0003842
xref: GAID:198
xref: ncithesaurus:Bone_of_the_Lower_Extremity
xref: SCTID:361370006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002428 ! limb bone
is_a: UBERON:0010742 ! bone of pelvic complex
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: develops_from UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: part_of UBERON:0001441 ! hindlimb skeleton
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0003465
name: chondrocranium bone
namespace: uberon
alt_id: UBERON:0004762
def: "A bone that is part of a chondrocranium [Obol]." [OBOL:automatic]
comment: ZFA:0001544 class made obsolete.
subset: vertebrate_core
synonym: "bone of chondrocranium" EXACT [OBOL:automatic]
synonym: "bone organ of chondrocranium" EXACT [OBOL:automatic]
synonym: "chondrocranium bone organ" EXACT [OBOL:automatic]
synonym: "endochondral neurocranium bone" EXACT [OBOL:automatic, UBERON:cjm]
xref: MA:0001478
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004766 ! cranial bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0003466
name: lower arm bone
namespace: uberon
def: "A bone that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region bone" EXACT [OBOL:automatic]
synonym: "antebrachial region bone organ" EXACT [OBOL:automatic]
synonym: "arm middle limb segment bone" EXACT [OBOL:automatic]
synonym: "arm middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "arm zeugopod bone" EXACT [OBOL:automatic]
synonym: "arm zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "bone of antebrachial region" EXACT [OBOL:automatic]
synonym: "bone of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of arm zeugopod" EXACT [OBOL:automatic]
synonym: "bone of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "bone of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of lower arm" EXACT [OBOL:automatic]
synonym: "bone of lower segment of arm" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of antebrachial region" EXACT [OBOL:automatic]
synonym: "bone organ of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of arm zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of lower arm" EXACT [OBOL:automatic]
synonym: "bone organ of lower segment of arm" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment bone" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod bone" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "lower arm bone organ" EXACT [OBOL:automatic]
synonym: "lower segment of arm bone" EXACT [OBOL:automatic]
synonym: "lower segment of arm bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of arm bone" EXACT [OBOL:automatic]
synonym: "zeugopod of arm bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region bone" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
xref: MA:0000598
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003460 ! arm bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod

[Term]
id: UBERON:0003467
name: sesamoid bone of gastrocnemius
namespace: uberon
def: "A small sesamoid bone situated behind a condyle of the femur." [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, MP:0009005, Wikipedia:Fabella]
synonym: "fabella" RELATED [MA:0001378]
synonym: "gastrocnemius sesamoid bone" EXACT [OBOL:automatic]
synonym: "m. gastrocnemius sesamoid bone" EXACT [OBOL:automatic]
synonym: "sesamoid bone of m. gastrocnemius" EXACT [OBOL:automatic]
xref: galen:Fabella
xref: MA:0001378
xref: SCTID:302749009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 {source="MA"} ! sesamoid bone
is_a: UBERON:0004251 ! lower leg bone
relationship: adjacent_to UBERON:0001388 ! gastrocnemius
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0003469
name: respiratory system artery
namespace: uberon
def: "An artery that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001804
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003643 ! respiratory system arterial blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0003482
name: vein of trabecular bone
namespace: uberon
def: "A portion of vein that is part of a trabecular bone tissue [Obol]." [OBOL:automatic]
synonym: "spongy bone vein" EXACT [OBOL:automatic]
synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic]
synonym: "trabecular bone vein" EXACT [OBOL:automatic]
synonym: "vein of spongy bone" EXACT [OBOL:automatic]
synonym: "vein of trabecular bone tissue" EXACT [OBOL:automatic]
xref: MA:0002254
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001638 ! vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002483 ! trabecular bone tissue
relationship: part_of UBERON:0002483 ! trabecular bone tissue

[Term]
id: UBERON:0003496
name: head blood vessel
namespace: uberon
def: "A blood vessel that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of adult head" EXACT [OBOL:automatic]
synonym: "blood vessel of head" EXACT [OBOL:automatic]
xref: MA:0000575
xref: SCTID:127865000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0003498
name: heart blood vessel
namespace: uberon
def: "A blood vessel that is part of a heart [Obol]." [OBOL:automatic]
synonym: "blood vessel of heart" EXACT [OBOL:automatic]
xref: MA:0002483
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0005985 ! coronary vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0003504
name: respiratory system blood vessel
namespace: uberon
def: "A blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001799
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0004807 ! respiratory system epithelium
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0003509
name: arterial blood vessel
namespace: uberon
def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [UBERON:cjm]
comment: only in MA - supertype of artery, arteriole, aorta.
xref: MA:0000061
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0004572 ! arterial system
relationship: part_of UBERON:0004572 ! arterial system

[Term]
id: UBERON:0003513
name: trunk blood vessel
namespace: uberon
def: "A blood vessel that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "blood vessel of torso" EXACT [OBOL:automatic]
synonym: "blood vessel of trunk" EXACT [OBOL:automatic]
synonym: "torso blood vessel" EXACT [OBOL:automatic]
xref: MA:0000511
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0003566
name: head connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head connective tissue" EXACT [OBOL:automatic]
synonym: "adult head portion of connective tissue" EXACT [OBOL:automatic]
synonym: "adult head textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of adult head" EXACT [OBOL:automatic]
synonym: "connective tissue of head" EXACT [OBOL:automatic]
synonym: "head portion of connective tissue" EXACT [OBOL:automatic]
synonym: "head textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of adult head" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of head" EXACT [OBOL:automatic]
synonym: "textus connectivus of adult head" EXACT [OBOL:automatic]
synonym: "textus connectivus of head" EXACT [OBOL:automatic]
xref: MA:0000577
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0003567
name: abdomen connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "abdomen portion of connective tissue" EXACT [OBOL:automatic]
synonym: "abdomen textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of abdomen" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of abdomen" EXACT [OBOL:automatic]
synonym: "textus connectivus of abdomen" EXACT [OBOL:automatic]
xref: MA:0000519
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003838 ! abdominal segment connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen

[Term]
id: UBERON:0003568
name: neck connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a neck [Obol]." [OBOL:automatic]
synonym: "connective tissue of neck" EXACT [OBOL:automatic]
synonym: "connective tissue of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) connective tissue" EXACT [OBOL:automatic]
synonym: "neck (volume) portion of connective tissue" EXACT [OBOL:automatic]
synonym: "neck (volume) textus connectivus" EXACT [OBOL:automatic]
synonym: "neck portion of connective tissue" EXACT [OBOL:automatic]
synonym: "neck textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of neck" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of neck (volume)" EXACT [OBOL:automatic]
synonym: "textus connectivus of neck" EXACT [OBOL:automatic]
synonym: "textus connectivus of neck (volume)" EXACT [OBOL:automatic]
xref: MA:0000585
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck

[Term]
id: UBERON:0003569
name: leg connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a leg [Obol]." [OBOL:automatic]
synonym: "connective tissue of leg" EXACT [OBOL:automatic]
synonym: "leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "leg textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of leg" EXACT [OBOL:automatic]
xref: MA:0000671
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003589 ! hindlimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0003570
name: respiratory system connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system portion of connective tissue" EXACT [OBOL:automatic]
synonym: "respiratory system textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "textus connectivus of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001814
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0003571
name: trachea connective tissue
namespace: uberon
synonym: "connective tissue of trachea" EXACT [OBOL:automatic]
synonym: "connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of trachea" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "textus connectivus of trachea" EXACT [OBOL:automatic]
synonym: "textus connectivus of windpipe" EXACT [OBOL:automatic]
synonym: "trachea portion of connective tissue" EXACT [OBOL:automatic]
synonym: "trachea textus connectivus" EXACT [OBOL:automatic]
synonym: "windpipe connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe portion of connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe textus connectivus" EXACT [OBOL:automatic]
xref: MA:0001853
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003580 ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! thoracic cavity connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea

[Term]
id: UBERON:0003572
name: chest connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region connective tissue" EXACT [OBOL:automatic]
synonym: "anterior thoracic region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anterior thoracic region textus connectivus" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "chest portion of connective tissue" EXACT [OBOL:automatic]
synonym: "chest textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "connective tissue of chest" EXACT [OBOL:automatic]
synonym: "connective tissue of front of thorax" EXACT [OBOL:automatic]
synonym: "front of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "front of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "front of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of chest" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of front of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "textus connectivus of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of chest" EXACT [OBOL:automatic]
synonym: "textus connectivus of front of thorax" EXACT [OBOL:automatic]
xref: MA:0000550
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003837 ! thoracic segment connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest

[Term]
id: UBERON:0003573
name: arm connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: MA:0000593
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003588 ! forelimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm

[Term]
id: UBERON:0003574
name: elbow connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "connective tissue of cubital region" EXACT [OBOL:automatic]
synonym: "connective tissue of elbow" EXACT [OBOL:automatic]
synonym: "cubital region connective tissue" EXACT [OBOL:automatic]
synonym: "cubital region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cubital region textus connectivus" EXACT [OBOL:automatic]
synonym: "elbow portion of connective tissue" EXACT [OBOL:automatic]
synonym: "elbow textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cubital region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of elbow" EXACT [OBOL:automatic]
synonym: "textus connectivus of cubital region" EXACT [OBOL:automatic]
synonym: "textus connectivus of elbow" EXACT [OBOL:automatic]
xref: MA:0000609
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003573 ! arm connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001461 ! elbow

[Term]
id: UBERON:0003575
name: wrist connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region connective tissue" EXACT [OBOL:automatic]
synonym: "carpal region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "carpal region textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of carpal region" EXACT [OBOL:automatic]
synonym: "connective tissue of wrist" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of carpal region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of wrist" EXACT [OBOL:automatic]
synonym: "textus connectivus of carpal region" EXACT [OBOL:automatic]
synonym: "textus connectivus of wrist" EXACT [OBOL:automatic]
synonym: "wrist portion of connective tissue" EXACT [OBOL:automatic]
synonym: "wrist textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000636
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003598 ! hand connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0004452 ! carpal region

[Term]
id: UBERON:0003577
name: knee connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a knee [Obol]." [OBOL:automatic]
synonym: "connective tissue of knee" EXACT [OBOL:automatic]
synonym: "knee portion of connective tissue" EXACT [OBOL:automatic]
synonym: "knee textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of knee" EXACT [OBOL:automatic]
synonym: "textus connectivus of knee" EXACT [OBOL:automatic]
xref: MA:0000667
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003569 ! leg connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee

[Term]
id: UBERON:0003580
name: lower respiratory tract connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0002409
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0001558 ! lower respiratory tract

[Term]
id: UBERON:0003581
name: eyelid connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon connective tissue" EXACT [OBOL:automatic]
synonym: "blepharon portion of connective tissue" EXACT [OBOL:automatic]
synonym: "blepharon textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of blepharon" EXACT [OBOL:automatic]
synonym: "connective tissue of eyelid" EXACT [OBOL:automatic]
synonym: "eyelid portion of connective tissue" EXACT [OBOL:automatic]
synonym: "eyelid textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of blepharon" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of eyelid" EXACT [OBOL:automatic]
synonym: "textus connectivus of blepharon" EXACT [OBOL:automatic]
synonym: "textus connectivus of eyelid" EXACT [OBOL:automatic]
xref: MA:0001251
xref: ncithesaurus:Eyelid_Connective_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0003583
name: larynx connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "connective tissue of larynx" EXACT [OBOL:automatic]
synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "larynx textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of larynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of larynx" EXACT [OBOL:automatic]
xref: MA:0001754
xref: ncithesaurus:Laryngeal_Connective_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx

[Term]
id: UBERON:0003586
name: trunk connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "connective tissue of torso" EXACT [OBOL:automatic]
synonym: "connective tissue of trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of torso" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of torso" EXACT [OBOL:automatic]
synonym: "textus connectivus of trunk" EXACT [OBOL:automatic]
synonym: "torso connective tissue" EXACT [OBOL:automatic]
synonym: "torso portion of connective tissue" EXACT [OBOL:automatic]
synonym: "torso textus connectivus" EXACT [OBOL:automatic]
synonym: "trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "trunk textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000513
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0003587
name: limb connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a limb [Obol]." [OBOL:automatic]
synonym: "connective tissue of limb" EXACT [OBOL:automatic]
synonym: "limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "limb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of limb" EXACT [OBOL:automatic]
xref: MA:0000689
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0003588
name: forelimb connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb connective tissue" EXACT [OBOL:automatic]
synonym: "anteriormost limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anteriormost limb textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of anteriormost limb" EXACT [OBOL:automatic]
synonym: "connective tissue of fore limb" EXACT [OBOL:automatic]
synonym: "connective tissue of forelimb" EXACT [OBOL:automatic]
synonym: "connective tissue of superior member" EXACT [OBOL:automatic]
synonym: "connective tissue of upper extremity" EXACT [OBOL:automatic]
synonym: "fore limb connective tissue" EXACT [OBOL:automatic]
synonym: "fore limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "fore limb textus connectivus" EXACT [OBOL:automatic]
synonym: "forelimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "forelimb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anteriormost limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of fore limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of forelimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of superior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member connective tissue" EXACT [OBOL:automatic]
synonym: "superior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "superior member textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of anteriormost limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of fore limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of forelimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of superior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper extremity" EXACT [OBOL:automatic]
synonym: "upper extremity connective tissue" EXACT [OBOL:automatic]
synonym: "upper extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper extremity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000613
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003587 ! limb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0003589
name: hindlimb connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity" EXACT [OBOL:automatic]
xref: MA:0000661
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003587 ! limb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0003590
name: main bronchus connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "connective tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "main bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "principal bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchus principalis" EXACT [OBOL:automatic]
synonym: "textus connectivus of main bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of primary bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of principal bronchus" EXACT [OBOL:automatic]
xref: MA:0001845
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003592 ! bronchus connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus

[Term]
id: UBERON:0003592
name: bronchus connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi textus connectivus" EXACT [OBOL:automatic]
synonym: "bronchial trunk connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk textus connectivus" EXACT [OBOL:automatic]
synonym: "bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchi" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchial trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchus" EXACT [OBOL:automatic]
xref: MA:0001831
xref: ncithesaurus:Bronchus_Connective_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003580 ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! thoracic cavity connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus

[Term]
id: UBERON:0003593
name: thoracic cavity connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "cavity of chest connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of chest portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of chest textus connectivus" EXACT [OBOL:automatic]
synonym: "cavity of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "chest cavity connective tissue" EXACT [OBOL:automatic]
synonym: "chest cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "chest cavity textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of cavity of chest" EXACT [OBOL:automatic]
synonym: "connective tissue of cavity of thorax" EXACT [OBOL:automatic]
synonym: "connective tissue of chest cavity" EXACT [OBOL:automatic]
synonym: "connective tissue of pectoral cavity" EXACT [OBOL:automatic]
synonym: "connective tissue of thoracic cavity" EXACT [OBOL:automatic]
synonym: "pectoral cavity connective tissue" EXACT [OBOL:automatic]
synonym: "pectoral cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "pectoral cavity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cavity of chest" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cavity of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of chest cavity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of pectoral cavity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thoracic cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of cavity of chest" EXACT [OBOL:automatic]
synonym: "textus connectivus of cavity of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of chest cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of pectoral cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of thoracic cavity" EXACT [OBOL:automatic]
synonym: "thoracic cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thoracic cavity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000555
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003837 ! thoracic segment connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity

[Term]
id: UBERON:0003598
name: hand connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a hand [Obol]." [OBOL:automatic]
synonym: "arm autopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region autopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of hand" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "hand portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hand textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hand" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of hand" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free upper limb" EXACT [OBOL:automatic]
xref: MA:0000620
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003588 ! forelimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0003601
name: neck cartilage
namespace: uberon
def: "A cartilage that is part of a neck [Obol]." [OBOL:automatic]
synonym: "cartilage of neck" EXACT [OBOL:automatic]
synonym: "cartilage of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) cartilage" EXACT [OBOL:automatic]
xref: MA:0000586
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003568 ! neck connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck

[Term]
id: UBERON:0003603
name: lower respiratory tract cartilage
namespace: uberon
def: "A cartilage that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0001819
xref: ncithesaurus:Lower_Respiratory_Tract_Cartilage
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003580 ! lower respiratory tract connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0001558 ! lower respiratory tract

[Term]
id: UBERON:0003604
name: trachea cartilage
namespace: uberon
def: "The cartilages of the trachea (or tracheal rings) vary from sixteen to twenty in number: each forms an imperfect ring, which occupies the anterior two-thirds or so of the circumference of the trachea, being deficient behind, where the tube is completed by fibrous tissue and unstriped muscular fibers." [Wikipedia:Tracheal_rings]
synonym: "cartilage of the trachea" RELATED [Wikipedia:Tracheal_rings]
synonym: "cartilage of trachea" EXACT [OBOL:automatic]
synonym: "cartilage of windpipe" EXACT [OBOL:automatic]
synonym: "cartilaginous ring of trachea" EXACT [EMAPA:18699]
synonym: "cartilaginous trachea cartilage" EXACT [OBOL:automatic]
synonym: "cartilago trachealis" EXACT [FMA:7434]
synonym: "ring of the trachea" RELATED [Wikipedia:Tracheal_rings]
synonym: "tracheal cartilage" EXACT [FMA:7434]
synonym: "tracheal ring" RELATED [Wikipedia:Tracheal_rings]
synonym: "windpipe cartilage" EXACT [OBOL:automatic]
xref: EMAPA:18699
xref: FMA:7434
xref: MA:0001857
xref: ncithesaurus:Trachea_Cartilage
xref: SCTID:278979006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003571 ! trachea connective tissue
is_a: UBERON:0003603 ! lower respiratory tract cartilage
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0003126 ! trachea
relationship: develops_from UBERON:0007267 ! trachea pre-cartilage rings
relationship: part_of UBERON:0003126 ! trachea

[Term]
id: UBERON:0003606
name: limb long bone
namespace: uberon
def: "A long bone that is part of a limb [Obol]." [OBOL:automatic]
synonym: "long bone of limb" EXACT [OBOL:automatic]
xref: MA:0000298
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002428 ! limb bone
is_a: UBERON:0002495 ! long bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0003607
name: forelimb long bone
namespace: uberon
def: "A long bone that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb long bone" EXACT [OBOL:automatic]
synonym: "fore limb long bone" EXACT [OBOL:automatic]
synonym: "long bone of anteriormost limb" EXACT [OBOL:automatic]
synonym: "long bone of fore limb" EXACT [OBOL:automatic]
synonym: "long bone of forelimb" EXACT [OBOL:automatic]
synonym: "long bone of superior member" EXACT [OBOL:automatic]
synonym: "long bone of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member long bone" EXACT [OBOL:automatic]
synonym: "upper extremity long bone" EXACT [OBOL:automatic]
xref: MA:0000299
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003606 ! limb long bone
is_a: UBERON:0008962 ! forelimb bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0003608
name: hindlimb long bone
namespace: uberon
def: "A long bone that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb long bone" EXACT [OBOL:automatic]
synonym: "inferior member long bone" EXACT [OBOL:automatic]
synonym: "long bone of hind limb" EXACT [OBOL:automatic]
synonym: "long bone of hindlimb" EXACT [OBOL:automatic]
synonym: "long bone of inferior member" EXACT [OBOL:automatic]
synonym: "long bone of lower extremity" EXACT [OBOL:automatic]
synonym: "lower extremity long bone" EXACT [OBOL:automatic]
xref: MA:0000300
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003464 ! hindlimb bone
is_a: UBERON:0003606 ! limb long bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0003618
name: aorta tunica media
namespace: uberon
def: "the middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873]
synonym: "adult aorta tunica media" EXACT [OBOL:automatic]
synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree tunica media" EXACT [OBOL:automatic]
synonym: "tunica media of adult aorta" EXACT [OBOL:automatic]
synonym: "tunica media of aorta" EXACT [OBOL:automatic]
synonym: "tunica media of dorsal aorta" EXACT [OBOL:automatic]
synonym: "tunica media of trunk of aortic tree" EXACT [OBOL:automatic]
xref: FMA:74433
xref: MA:0002903
xref: SCTID:48467007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004178 ! aorta smooth muscle tissue
is_a: UBERON:0007239 ! tunica media of artery
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0004663 ! aorta wall

[Term]
id: UBERON:0003620
name: hand digit 1 phalanx
namespace: uberon
def: "A phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "digit long bone of first digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 1" EXACT [OBOL:automatic]
synonym: "digit long bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "digit long bone of thumb" EXACT [OBOL:automatic]
synonym: "first digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "first digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "first digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 1 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 1 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of first digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 1" EXACT [OBOL:automatic]
synonym: "long bone of digit of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "long bone of digit of thumb" EXACT [OBOL:automatic]
synonym: "phalanx of first digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 1" EXACT [OBOL:automatic]
synonym: "phalanx of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "phalanx of thumb" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] digit long bone" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] long bone of digit" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] phalanx" EXACT [OBOL:automatic]
synonym: "thumb digit long bone" EXACT [OBOL:automatic]
synonym: "thumb long bone of digit" EXACT [OBOL:automatic]
synonym: "thumb phalanx" EXACT [OBOL:automatic]
xref: EMAPA:19113
xref: FMA:35477
xref: MA:0001389
xref: ncithesaurus:Hand_Digit_1_Phalanx
xref: SCTID:181975002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: develops_from UBERON:0010675 ! finger 1 phalanx cartilage condensation
relationship: part_of UBERON:0001463 ! hand digit 1

[Term]
id: UBERON:0003622
name: hand digit 2
namespace: uberon
def: "2nd digit of the fore autopod." [Wikipedia:Index_finger]
comment: comment: This class represents all instances of the 2nd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "2nd digit of hand" EXACT []
synonym: "2nd finger" EXACT []
synonym: "digit 2 of fore-paw" EXACT [EMAPA:17432]
synonym: "finger 2" EXACT [EHDAA2:0000517]
synonym: "fore digit II" EXACT [AAO:0010640]
synonym: "index finger" NARROW []
synonym: "second digit of hand" EXACT [FMA:24946]
synonym: "second finger" EXACT []
xref: AAO:0010640
xref: EHDAA2:0000517
xref: EMAPA:17432
xref: FMA:24946
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d5/Index_finger.JPG/200px-Index_finger.JPG
xref: MA:0000455
xref: ncithesaurus:Hand_Digit_2
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006049 ! digit 2
intersection_of: UBERON:0006049 ! digit 2
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0003623
name: hand digit 3
namespace: uberon
def: "3rd digit of the fore autopod." [Wikipedia:Middle_finger]
comment: comment: This class represents all instances of the 3rd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "3rd digit of hand" EXACT []
synonym: "3rd finger" EXACT []
synonym: "digit 3 of fore-paw" EXACT [EMAPA:17435]
synonym: "finger 3" EXACT [EHDAA2:0000523]
synonym: "fore digit III" EXACT [AAO:0010641]
synonym: "middle finger" NARROW []
synonym: "third digit of hand" EXACT [FMA:24947]
synonym: "third finger" EXACT []
xref: AAO:0010641
xref: EHDAA2:0000523
xref: EMAPA:17435
xref: FMA:24947
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Middle_finger.jpg/200px-Middle_finger.jpg
xref: MA:0000456
xref: ncithesaurus:Hand_Digit_3
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006050 ! digit 3
intersection_of: UBERON:0006050 ! digit 3
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0003624
name: hand digit 4
namespace: uberon
def: "4th digit of the fore autopod." [Wikipedia:Ring_finger]
comment: comment: This class represents all instances of the 4th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "4th digit of hand" EXACT []
synonym: "4th finger" EXACT []
synonym: "digit 4 of fore-paw" EXACT [EMAPA:17438]
synonym: "finger 4" EXACT [EHDAA2:0000529]
synonym: "fore digit IV" EXACT [AAO:0010642]
synonym: "fourth digit of hand" EXACT [FMA:24948]
synonym: "fourth finger" EXACT []
synonym: "ring finger" NARROW []
xref: AAO:0010642
xref: EHDAA2:0000529
xref: EMAPA:17438
xref: FMA:24948
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Ring_finger.JPG/200px-Ring_finger.JPG
xref: MA:0000457
xref: ncithesaurus:Hand_Digit_4
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006051 ! digit 4
intersection_of: UBERON:0006051 ! digit 4
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0003625
name: hand digit 5
namespace: uberon
def: "5th digit of the fore autopod." [Wikipedia:Little_finger]
comment: comment: This class represents all instances of the 5th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "5th digit of hand" EXACT []
synonym: "5th finger" EXACT []
synonym: "digit 5 of fore-paw" EXACT [EMAPA:17441]
synonym: "fifth digit of hand" EXACT [FMA:24949]
synonym: "fifth finger" EXACT []
synonym: "finger 5" EXACT [EHDAA2:0000535]
synonym: "fore digit V" EXACT [AAO:0010643]
synonym: "little finger" NARROW []
xref: AAO:0010643
xref: EHDAA2:0000535
xref: EMAPA:17441
xref: FMA:24949
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Pink.jpg/200px-Pink.jpg
xref: MA:0000458
xref: ncithesaurus:Hand_Digit_5
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006052 ! digit 5
intersection_of: UBERON:0006052 ! digit 5
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0003631
name: foot digit 1
namespace: uberon
def: "1st digit of the hind autopod." [Wikipedia:Big_toe]
synonym: "big toe" NARROW []
synonym: "digit 1 of hind-paw" EXACT [EMAPA:17460]
synonym: "digitus primus (I) pedis" RELATED [BTO:0002349]
synonym: "great toe" EXACT [FMA:25047]
synonym: "hallex" RELATED []
synonym: "hallux" EXACT [FMA:TA]
synonym: "hallux; digitus primus [I]" EXACT [FMA:25047]
synonym: "hind digit I" EXACT [AAO:0010644]
synonym: "toe 1" EXACT [EHDAA2:0002037]
xref: AAO:0010644
xref: BTO:0002349
xref: EHDAA2:0002037
xref: EMAPA:17460
xref: FMA:25047
xref: GAID:45
xref: MA:0000465
xref: MESH:A.01.378.610.250.300.792.380
xref: ncithesaurus:Foot_Digit_1
xref: VAO:0000201
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006048 ! digit 1
intersection_of: UBERON:0006048 ! digit 1
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0003632
name: foot digit 2
namespace: uberon
def: "2nd digit of the hind autopod." [UBERON:cjm]
synonym: "2nd toe" EXACT []
synonym: "digit 2 of hind-paw" EXACT [EMAPA:17463]
synonym: "digitus secundus (II) pedis" RELATED [BTO:0002350]
synonym: "digitus secundus [ii]" EXACT [FMA:25048]
synonym: "digitus secundus pedis" EXACT [BTO:0002350]
synonym: "hind digit II" EXACT [AAO:0010645]
synonym: "second digit of foot" EXACT [FMA:25048]
synonym: "second toe" EXACT [FMA:25048]
synonym: "toe 2" EXACT [EHDAA2:0002042]
xref: AAO:0010645
xref: BTO:0002350
xref: EHDAA2:0002042
xref: EMAPA:17463
xref: FMA:25048
xref: MA:0000466
xref: ncithesaurus:Foot_Digit_2
xref: SCTID:362817008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006049 ! digit 2
intersection_of: UBERON:0006049 ! digit 2
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0003633
name: foot digit 3
namespace: uberon
def: "3rd digit of the hind autopod." [UBERON:cjm]
synonym: "3rd toe" EXACT []
synonym: "digit 3 of hind-paw" EXACT [EMAPA:17466]
synonym: "digitus tertius (III) pedis" RELATED [BTO:0002351]
synonym: "digitus tertius [iii]" EXACT [FMA:25051]
synonym: "digitus tertius pedis" EXACT [BTO:0002351]
synonym: "hind digit III" EXACT [AAO:0010646]
synonym: "third digit of foot" EXACT [FMA:25051]
synonym: "third toe" EXACT [FMA:25051]
synonym: "toe 3" EXACT [EHDAA2:0002047]
xref: AAO:0010646
xref: BTO:0002351
xref: EHDAA2:0002047
xref: EMAPA:17466
xref: FMA:25051
xref: MA:0000467
xref: ncithesaurus:Foot_Digit_3
xref: SCTID:362821001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006050 ! digit 3
intersection_of: UBERON:0006050 ! digit 3
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0003634
name: foot digit 4
namespace: uberon
def: "4th digit of the hind autopod." [UBERON:cjm]
synonym: "4th toe" EXACT []
synonym: "digit 4 of hind-paw" EXACT [EMAPA:17469]
synonym: "digitus quartis pedis" EXACT [BTO:0002352]
synonym: "digitus quartus (IV) pedis" RELATED [BTO:0002352]
synonym: "digitus quartus [iv]" EXACT [FMA:25052]
synonym: "fourth digit of foot" EXACT [FMA:25052]
synonym: "fourth toe" EXACT [FMA:25052]
synonym: "hind digit IV" EXACT [AAO:0010656]
synonym: "toe 4" EXACT [EHDAA2:0002052]
xref: AAO:0010656
xref: BTO:0002352
xref: EHDAA2:0002052
xref: EMAPA:17469
xref: FMA:25052
xref: MA:0000468
xref: ncithesaurus:Foot_Digit_4
xref: SCTID:362826006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006051 ! digit 4
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0003635
name: foot digit 5
namespace: uberon
def: "5th digit of the hind autopod." [UBERON:cjm, Wikipedia:Fifth_toe]
synonym: "5th toe" EXACT []
synonym: "digit 5 of hind-paw" EXACT [EMAPA:17472]
synonym: "digitus minimus; digitus quintus [v]" EXACT [FMA:25053]
synonym: "digitus quintus [v] pedis" EXACT [FMA:25053, FMA:TA]
synonym: "fifth digit of foot" EXACT [FMA:25053]
synonym: "fifth toe" EXACT [FMA:25053]
synonym: "hind digit V" EXACT [AAO:0010658]
synonym: "little toe" NARROW []
synonym: "toe 5" EXACT [EHDAA2:0002057]
xref: AAO:0010658
xref: BTO:0002353
xref: EHDAA2:0002057
xref: EMAPA:17472
xref: FMA:25053
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0000469
xref: ncithesaurus:Foot_Digit_5
xref: SCTID:362830009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006052 ! digit 5
intersection_of: UBERON:0006052 ! digit 5
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0003636
name: hand digit 2 phalanx
namespace: uberon
def: "A phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2 nd digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "2 nd finger digit long bone" EXACT [OBOL:automatic]
synonym: "2 nd finger long bone of digit" EXACT [OBOL:automatic]
synonym: "2 nd finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 2 nd finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 2" EXACT [OBOL:automatic]
synonym: "digit long bone of second finger" EXACT [OBOL:automatic]
synonym: "hand digit 2 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 2 long bone of digit" EXACT [OBOL:automatic]
synonym: "index finger phalanx" EXACT [FMA:35480]
synonym: "long bone of digit of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 2 nd finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 2" EXACT [OBOL:automatic]
synonym: "long bone of digit of second finger" EXACT [OBOL:automatic]
synonym: "phalanx of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 2 nd finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of index finger" EXACT [FMA:35480]
synonym: "phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger digit long bone" EXACT [OBOL:automatic]
synonym: "second finger long bone of digit" EXACT [OBOL:automatic]
synonym: "second finger phalanx" EXACT [OBOL:automatic]
xref: EMAPA:19115
xref: FMA:35480
xref: MA:0001390
xref: ncithesaurus:Hand_Digit_2_Phalanx
xref: SCTID:361783009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: develops_from UBERON:0010676 ! finger 2 phalanx cartilage condensation
relationship: part_of UBERON:0003622 ! hand digit 2

[Term]
id: UBERON:0003637
name: hand digit 3 phalanx
namespace: uberon
def: "A phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3 rd digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "3 rd finger digit long bone" EXACT [OBOL:automatic]
synonym: "3 rd finger long bone of digit" EXACT [OBOL:automatic]
synonym: "3 rd finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 3 rd finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 3" EXACT [OBOL:automatic]
synonym: "digit long bone of third finger" EXACT [OBOL:automatic]
synonym: "hand digit 3 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 3 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 3 rd finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 3" EXACT [OBOL:automatic]
synonym: "long bone of digit of third finger" EXACT [OBOL:automatic]
synonym: "middle finger phalanx" EXACT [FMA:35483]
synonym: "phalanx of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 3 rd finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of middle finger" EXACT [FMA:35483]
synonym: "phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger digit long bone" EXACT [OBOL:automatic]
synonym: "third finger long bone of digit" EXACT [OBOL:automatic]
synonym: "third finger phalanx" EXACT [OBOL:automatic]
xref: EMAPA:19117
xref: FMA:35483
xref: MA:0001391
xref: ncithesaurus:Hand_Digit_3_Phalanx
xref: SCTID:361785002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: develops_from UBERON:0010677 ! finger 3 phalanx cartilage condensation
relationship: part_of UBERON:0003623 ! hand digit 3

[Term]
id: UBERON:0003638
name: hand digit 4 phalanx
namespace: uberon
def: "A phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4 th digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "4 th digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "4 th digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "4 th finger digit long bone" EXACT [OBOL:automatic]
synonym: "4 th finger long bone of digit" EXACT [OBOL:automatic]
synonym: "4 th finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 4 th finger" EXACT [OBOL:automatic]
synonym: "digit long bone of fourth finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 4" EXACT [OBOL:automatic]
synonym: "fourth finger digit long bone" EXACT [OBOL:automatic]
synonym: "fourth finger long bone of digit" EXACT [OBOL:automatic]
synonym: "fourth finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 4 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 4 th finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of fourth finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 4 th finger" EXACT [OBOL:automatic]
synonym: "phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of ring finger" EXACT [FMA:35486]
synonym: "ring finger phalanx" EXACT [FMA:35486]
xref: EMAPA:19119
xref: FMA:35486
xref: MA:0001392
xref: ncithesaurus:Hand_Digit_4_Phalanx
xref: SCTID:361787005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: develops_from UBERON:0010678 ! finger 4 phalanx cartilage condensation
relationship: part_of UBERON:0003624 ! hand digit 4

[Term]
id: UBERON:0003639
name: hand digit 5 phalanx
namespace: uberon
def: "A phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5 th digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "5 th digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "5 th digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "5 th finger digit long bone" EXACT [OBOL:automatic]
synonym: "5 th finger long bone of digit" EXACT [OBOL:automatic]
synonym: "5 th finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 5 th finger" EXACT [OBOL:automatic]
synonym: "digit long bone of fifth finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 5" EXACT [OBOL:automatic]
synonym: "fifth finger digit long bone" EXACT [OBOL:automatic]
synonym: "fifth finger long bone of digit" EXACT [OBOL:automatic]
synonym: "fifth finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 5 long bone of digit" EXACT [OBOL:automatic]
synonym: "little finger phalanx" EXACT [FMA:35489]
synonym: "long bone of digit of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 5 th finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of fifth finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 5 th finger" EXACT [OBOL:automatic]
synonym: "phalanx of fifth digit of hand" EXACT [FMA:35489]
synonym: "phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of little finger" EXACT [FMA:35489]
xref: EMAPA:19121
xref: FMA:35489
xref: MA:0001393
xref: ncithesaurus:Hand_Digit_5_Phalanx
xref: SCTID:361789008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: develops_from UBERON:0010679 ! finger 5 phalanx cartilage condensation
relationship: part_of UBERON:0003625 ! hand digit 5

[Term]
id: UBERON:0003640
name: foot digit 1 phalanx
namespace: uberon
def: "A phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "big toe phalanx" EXACT [FMA:32884]
synonym: "digit long bone of foot digit 1" EXACT [OBOL:automatic]
synonym: "digit long bone of hallux" EXACT [OBOL:automatic]
synonym: "foot digit 1 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 1 long bone of digit" EXACT [OBOL:automatic]
synonym: "hallux digit long bone" EXACT [OBOL:automatic]
synonym: "hallux long bone of digit" EXACT [OBOL:automatic]
synonym: "hallux phalanx" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 1" EXACT [OBOL:automatic]
synonym: "long bone of digit of hallux" EXACT [OBOL:automatic]
synonym: "phalanx of big toe" EXACT [FMA:32884]
synonym: "phalanx of first digit of foot" EXACT [FMA:32884]
synonym: "phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "phalanx of great toe" EXACT [FMA:32884]
synonym: "phalanx of hallux" EXACT [OBOL:automatic]
xref: EMAPA:19124
xref: FMA:32884
xref: MA:0001381
xref: ncithesaurus:Foot_Digit_1_Phalanx
xref: SCTID:361798006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: develops_from UBERON:0010680 ! toe 1 phalanx cartilage condensation
relationship: part_of UBERON:0003631 ! foot digit 1

[Term]
id: UBERON:0003641
name: foot digit 2 phalanx
namespace: uberon
def: "A phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 2" EXACT [OBOL:automatic]
synonym: "foot digit 2 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 2 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of second toe" EXACT [FMA:32899]
synonym: "second toe phalanx" EXACT [FMA:32899]
xref: EMAPA:19126
xref: FMA:32899
xref: MA:0001382
xref: ncithesaurus:Foot_Digit_2_Phalanx
xref: SCTID:361800004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: develops_from UBERON:0010681 ! toe 2 phalanx cartilage condensation
relationship: part_of UBERON:0003632 ! foot digit 2

[Term]
id: UBERON:0003642
name: foot digit 3 phalanx
namespace: uberon
def: "A phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 3" EXACT [OBOL:automatic]
synonym: "foot digit 3 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 3 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of third toe" EXACT [FMA:32900]
synonym: "third toe phalanx" EXACT [FMA:32900]
xref: EMAPA:19128
xref: FMA:32900
xref: MA:0001383
xref: ncithesaurus:Foot_Digit_3_Phalanx
xref: SCTID:361802007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: develops_from UBERON:0010682 ! toe 3 phalanx cartilage condensation
relationship: part_of UBERON:0003633 ! foot digit 3

[Term]
id: UBERON:0003643
name: respiratory system arterial blood vessel
namespace: uberon
def: "An arterial blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001800
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003504 ! respiratory system blood vessel
is_a: UBERON:0003509 ! arterial blood vessel
intersection_of: UBERON:0003509 ! arterial blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0003645
name: metacarpal bone of digit 1
namespace: uberon
synonym: "finger 1 metacarpus" EXACT []
synonym: "first digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "first digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "first metacarpal bone" EXACT [FMA:23899]
synonym: "hand digit 1 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 1 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 1" EXACT []
synonym: "metacarpal bone digit 1" EXACT [MA:0001364]
synonym: "metacarpal bone of first digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 1" EXACT [OBOL:automatic]
synonym: "metacarpal bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "metacarpal bone of thumb" EXACT [OBOL:automatic]
synonym: "metacarpal I" EXACT [FMA:23899]
synonym: "metacarpal of first digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 1" EXACT [OBOL:automatic]
synonym: "metacarpal of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "metacarpal of thumb" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] metacarpal" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] metacarpal bone" EXACT [OBOL:automatic]
synonym: "thumb metacarpal" EXACT [OBOL:automatic]
synonym: "thumb metacarpal bone" EXACT [OBOL:automatic]
xref: AAO:0010616
xref: EMAPA:19112
xref: FMA:23899
xref: MA:0001364
xref: ncithesaurus:Metacarpal_Bone_Digit_1
xref: SCTID:181973009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002374 ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004338 ! proximal phalanx of hand digit 1
relationship: develops_from UBERON:0010570 ! finger 1 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004338 ! proximal phalanx of hand digit 1

[Term]
id: UBERON:0003646
name: metacarpal bone of digit 2
namespace: uberon
synonym: "2 nd digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "2 nd finger metacarpal" EXACT [OBOL:automatic]
synonym: "2 nd finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "finger 2 metacarpus" EXACT []
synonym: "hand digit 2 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 2 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 2" EXACT []
synonym: "metacarpal bone digit 2" EXACT [MA:0001365]
synonym: "metacarpal bone of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 2 nd finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 2" EXACT [OBOL:automatic]
synonym: "metacarpal bone of second finger" EXACT [OBOL:automatic]
synonym: "metacarpal II" EXACT [FMA:23900]
synonym: "metacarpal of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 2 nd finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 2" EXACT [OBOL:automatic]
synonym: "metacarpal of second finger" EXACT [OBOL:automatic]
synonym: "second finger metacarpal" EXACT [OBOL:automatic]
synonym: "second finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "second metacarpal bone" EXACT [FMA:23900]
xref: AAO:0000853
xref: EMAPA:19114
xref: FMA:23900
xref: MA:0001365
xref: ncithesaurus:Metacarpal_Bone_Digit_2
xref: SCTID:263399007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0002374 ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004328 ! proximal phalanx of hand digit 2
relationship: develops_from UBERON:0010571 ! finger 2 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004328 ! proximal phalanx of hand digit 2

[Term]
id: UBERON:0003647
name: metacarpal bone of digit 3
namespace: uberon
synonym: "3 rd digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "3 rd finger metacarpal" EXACT [OBOL:automatic]
synonym: "3 rd finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "finger 3 metacarpus" EXACT []
synonym: "hand digit 3 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 3 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 3" EXACT []
synonym: "metacarpal bone digit 3" EXACT [MA:0001366]
synonym: "metacarpal bone of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 3 rd finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 3" EXACT [OBOL:automatic]
synonym: "metacarpal bone of third finger" EXACT [OBOL:automatic]
synonym: "metacarpal III" EXACT [FMA:23901]
synonym: "metacarpal of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 3 rd finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 3" EXACT [OBOL:automatic]
synonym: "metacarpal of third finger" EXACT [OBOL:automatic]
synonym: "third finger metacarpal" EXACT [OBOL:automatic]
synonym: "third finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "third metacarpal bone" EXACT [FMA:23901]
xref: AAO:0000854
xref: EMAPA:19116
xref: FMA:23901
xref: MA:0001366
xref: ncithesaurus:Metacarpal_Bone_Digit_3
xref: SCTID:263400000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0002374 ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004329 ! proximal phalanx of hand digit 3
relationship: develops_from UBERON:0010572 ! finger 3 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004329 ! proximal phalanx of hand digit 3

[Term]
id: UBERON:0003648
name: metacarpal bone of digit 4
namespace: uberon
synonym: "4 th digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "4 th digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "4 th finger metacarpal" EXACT [OBOL:automatic]
synonym: "4 th finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "finger 4 metacarpus" EXACT []
synonym: "fourth finger metacarpal" EXACT [OBOL:automatic]
synonym: "fourth finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fourth metacarpal bone" EXACT [FMA:23902]
synonym: "hand digit 4 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 4 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 4" EXACT []
synonym: "metacarpal bone digit 4" EXACT [MA:0001367]
synonym: "metacarpal bone of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 4 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of fourth finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 4" EXACT [OBOL:automatic]
synonym: "metacarpal IV" EXACT [FMA:23902]
synonym: "metacarpal of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 4 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal of fourth finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 4" EXACT [OBOL:automatic]
xref: AAO:0010615
xref: EMAPA:19118
xref: FMA:23902
xref: MA:0001367
xref: ncithesaurus:Metacarpal_Bone_Digit_4
xref: SCTID:263401001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002374 ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004330 ! proximal phalanx of hand digit 4
relationship: develops_from UBERON:0010573 ! finger 4 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004330 ! proximal phalanx of hand digit 4

[Term]
id: UBERON:0003649
name: metacarpal bone of digit 5
namespace: uberon
comment: note FMA also has FMA:36782
synonym: "5 th digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "5 th digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "5 th finger metacarpal" EXACT [OBOL:automatic]
synonym: "5 th finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fifth finger metacarpal" EXACT [OBOL:automatic]
synonym: "fifth finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fifth metacarpal bone" EXACT [FMA:23903]
synonym: "finger 5 metacarpus" EXACT []
synonym: "hand digit 5 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 5 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 5" EXACT []
synonym: "metacarpal bone digit 5" EXACT [MA:0001368]
synonym: "metacarpal bone of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 5 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of fifth finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 5" EXACT [OBOL:automatic]
synonym: "metacarpal of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 5 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal of fifth finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 5" EXACT [OBOL:automatic]
synonym: "metacarpal V" EXACT []
xref: AAO:0000855
xref: EMAPA:19120
xref: FMA:23903
xref: MA:0001368
xref: ncithesaurus:Metacarpal_Bone_Digit_5
xref: SCTID:263402008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0002374 ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004331 ! proximal phalanx of hand digit 5
relationship: develops_from UBERON:0010574 ! finger 5 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004331 ! proximal phalanx of hand digit 5

[Term]
id: UBERON:0003650
name: metatarsal bone of digit 1
namespace: uberon
synonym: "first metatarsal bone" EXACT [FMA:24502]
synonym: "foot digit 1 metatarsal bone" EXACT [OBOL:automatic]
synonym: "hallux metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 1" EXACT []
synonym: "metatarsal bone digit 1" EXACT [MA:0001369]
synonym: "metatarsal bone of foot digit 1" EXACT [OBOL:automatic]
synonym: "metatarsal bone of hallux" EXACT [OBOL:automatic]
synonym: "metatarsal I" EXACT [AAO:0000925]
synonym: "toe 1 metatarsal" EXACT []
synonym: "toe 1 metatarsus" EXACT []
xref: AAO:0000925
xref: EMAPA:19123
xref: FMA:24502
xref: MA:0001369
xref: ncithesaurus:Metatarsal_Bone_Digit_1
xref: SCTID:182121005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0001448 ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004332 ! proximal phalanx of foot digit 1
relationship: develops_from UBERON:0010557 ! toe 1 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004332 ! proximal phalanx of foot digit 1

[Term]
id: UBERON:0003651
name: metatarsal bone of digit 2
namespace: uberon
synonym: "foot digit 2 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 2" EXACT []
synonym: "metatarsal bone digit 2" EXACT [MA:0001370]
synonym: "metatarsal bone of foot digit 2" EXACT [OBOL:automatic]
synonym: "metatarsal II" EXACT [AAO:0000926]
synonym: "second metatarsal bone" EXACT [FMA:24503]
synonym: "toe 2 metatarsal" EXACT []
synonym: "toe 2 metatarsus" EXACT []
xref: AAO:0000926
xref: EMAPA:19125
xref: FMA:24503
xref: MA:0001370
xref: ncithesaurus:Metatarsal_Bone_Digit_2
xref: SCTID:182128004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0001448 ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004333 ! proximal phalanx of foot digit 2
relationship: develops_from UBERON:0010558 ! toe 2 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004333 ! proximal phalanx of foot digit 2

[Term]
id: UBERON:0003652
name: metatarsal bone of digit 3
namespace: uberon
synonym: "foot digit 3 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 3" EXACT []
synonym: "metatarsal bone digit 3" EXACT [MA:0001371]
synonym: "metatarsal bone of foot digit 3" EXACT [OBOL:automatic]
synonym: "metatarsal III" EXACT [AAO:0000927]
synonym: "third metatarsal bone" EXACT [FMA:24504]
synonym: "toe 3 metatarsal" EXACT []
synonym: "toe 3 metatarsus" EXACT []
xref: AAO:0000927
xref: EMAPA:19127
xref: FMA:24504
xref: MA:0001371
xref: ncithesaurus:Metatarsal_Bone_Digit_3
xref: SCTID:182134006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0001448 ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004334 ! proximal phalanx of foot digit 3
relationship: develops_from UBERON:0010559 ! toe 3 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004334 ! proximal phalanx of foot digit 3

[Term]
id: UBERON:0003653
name: metatarsal bone of digit 4
namespace: uberon
synonym: "foot digit 4 metatarsal bone" EXACT [OBOL:automatic]
synonym: "fourth metatarsal bone" EXACT [FMA:24505]
synonym: "metatarsal 4" EXACT []
synonym: "metatarsal bone digit 4" EXACT [MA:0001372]
synonym: "metatarsal bone of foot digit 4" EXACT [OBOL:automatic]
synonym: "metatarsal IV" EXACT [AAO:0000928]
synonym: "toe 4 metatarsal" EXACT []
synonym: "toe 4 metatarsus" EXACT []
xref: AAO:0000928
xref: EMAPA:19129
xref: FMA:24505
xref: MA:0001372
xref: ncithesaurus:Metatarsal_Bone_Digit_4
xref: SCTID:182139001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0001448 ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004335 ! proximal phalanx of foot digit 4
relationship: develops_from UBERON:0010560 ! toe 4 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004335 ! proximal phalanx of foot digit 4

[Term]
id: UBERON:0003654
name: metatarsal bone of digit 5
namespace: uberon
synonym: "fifth metatarsal bone" EXACT [FMA:24506]
synonym: "foot digit 5 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 5" EXACT []
synonym: "metatarsal bone digit 5" EXACT [MA:0001373]
synonym: "metatarsal bone of foot digit 5" EXACT [OBOL:automatic]
synonym: "metatarsal V" EXACT [AAO:0000929]
synonym: "toe 5 metatarsal" EXACT []
synonym: "toe 5 metatarsus" EXACT []
xref: AAO:0000929
xref: EMAPA:19131
xref: FMA:24506
xref: MA:0001373
xref: ncithesaurus:Metatarsal_Bone_Digit_5
xref: SCTID:182144008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0001448 ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004336 ! proximal phalanx of foot digit 5
relationship: develops_from UBERON:0010561 ! toe 5 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004336 ! proximal phalanx of foot digit 5

[Term]
id: UBERON:0003655
name: molar tooth
namespace: uberon
def: "Molars are the rearmost and most complicated kind of tooth in most mammals." [Wikipedia:Molar_(tooth)]
comment: Adult humans have twelve molars, in four groups of three at the back of the mouth. The third, rearmost molar in each group is called a wisdom tooth. It is the last tooth to appear, breaking through the surface of the gum at about the age of twenty, although this varies from individual to individual. Ethnicity can also have an impact on the age at which this occurs, with statistical variations between groups. The human mouth contains upper (maxillary) and lower (mandibular) molars. They are: maxillary first molar, maxillary second molar, maxillary third molar, mandibular first molar, mandibular second molar, and mandibular third molar.
synonym: "dens molaris" EXACT [Wikipedia:Molar_%28tooth%29]
synonym: "molar" EXACT [MA:0000350]
synonym: "molaris" EXACT [BTO:0001759]
xref: BTO:0001759
xref: FMA:55638
xref: MA:0000350
xref: MESH:A.14.254.860.525
xref: ncithesaurus:Molar_Tooth
xref: SCTID:362115002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003656
name: mesopodium bone
namespace: uberon
def: "A bone that is part of a mesopodium skeleton[cjm]. The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost[WP]." [UBERON:cjm, Wikipedia:Carpus_and_tarsus_of_land_vertebrates]
synonym: "basipodium bone" EXACT [MA:th]
synonym: "carpal/tarsal bone" EXACT [MA:0000295]
synonym: "mesopodium bone" EXACT []
xref: MA:0000295
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002428 ! limb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0006716 ! mesopodium region
relationship: part_of UBERON:0006716 ! mesopodium region
relationship: part_of UBERON:0009878 ! mesopodium skeleton

[Term]
id: UBERON:0003657
name: limb joint
namespace: uberon
def: "A skeletal joint that is part of a limb [Obol]." [OBOL:automatic]
comment: we use the FMA set-of term in absence of a singular term
synonym: "joint of limb" EXACT []
synonym: "joint of skeletal limb" EXACT [Obol:automatic]
synonym: "skeletal limb joint" EXACT [GO:0036023]
xref: EMAPA:19204
xref: FMA:71276
xref: galen:LimbJoint
xref: MA:0000691
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0003658
name: hip muscle
namespace: uberon
def: "A muscle organ that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip muscle organ" EXACT [OBOL:automatic]
synonym: "hip region muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of hip" EXACT [OBOL:automatic]
synonym: "muscle organ of hip region" EXACT [OBOL:automatic]
synonym: "muscle organ of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae muscle organ" EXACT [OBOL:automatic]
xref: MA:0000657
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001497 ! muscle of pelvic girdle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip

[Term]
id: UBERON:0003659
name: foot digit muscle
namespace: uberon
def: "A muscle organ that is part of a toe [Obol]." [OBOL:automatic]
synonym: "digit of foot muscle organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic]
synonym: "digitus pedis muscle organ" EXACT [OBOL:automatic]
synonym: "foot digit muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of foot" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "muscle organ of digitus pedis" EXACT [OBOL:automatic]
synonym: "muscle organ of foot digit" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "muscle organ of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit muscle organ" EXACT [OBOL:automatic]
synonym: "toe muscle organ" EXACT [OBOL:automatic]
xref: MA:0000648
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001498 ! muscle of foot
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0003660
name: eyelid muscle
namespace: uberon
def: "A muscle organ that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon muscle organ" EXACT [OBOL:automatic]
synonym: "eyelid muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of blepharon" EXACT [OBOL:automatic]
synonym: "muscle organ of eyelid" EXACT [OBOL:automatic]
xref: MA:0000269
xref: ncithesaurus:Eyelid_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004253 ! skin muscle
is_a: UBERON:0004277 ! eye muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0003661
name: limb muscle
namespace: uberon
def: "A muscle organ that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of limb" EXACT [OBOL:automatic]
xref: MA:0000692
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0003662
name: forelimb muscle
namespace: uberon
alt_id: UBERON:0005634
comment: AO notes: FMA and MA class actually refer to muscles of entire pectoral complex
synonym: "arm muscle system" EXACT [EHDAA2:0000141]
synonym: "fore limb muscle organ" EXACT [OBOL:automatic]
synonym: "forelimb muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of free upper limb" EXACT [FMA:37348]
synonym: "muscle of upper limb" EXACT [FMA:9621]
synonym: "musculature of arm" RELATED PLURAL []
synonym: "musculature of the arm" RELATED PLURAL []
synonym: "wing muscle" NARROW SENSU [Geisha:syn]
xref: AAO:0000204
xref: BTO:0000479
xref: FMA:37348
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003661 ! limb muscle
is_a: UBERON:0010891 ! pectoral complex muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0003663
name: hindlimb muscle
namespace: uberon
def: "A muscle organ that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "free lower limb muscle" EXACT [FMA:37368]
synonym: "hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of posterior limb" EXACT [UBERON:cjm]
synonym: "muscle organ of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity" EXACT [OBOL:automatic]
xref: AAO:0000222
xref: EFO:0001928
xref: FMA:37368
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003661 ! limb muscle
is_a: UBERON:0010890 ! pelvic complex muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0003664
name: hand digit muscle
namespace: uberon
def: "A muscle organ that is part of a finger [Obol]." [OBOL:automatic]
synonym: "digit of hand muscle organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "digitus manus muscle organ" EXACT [OBOL:automatic]
synonym: "finger muscle organ" EXACT [OBOL:automatic]
synonym: "hand digit muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of hand" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of digitus manus" EXACT [OBOL:automatic]
synonym: "muscle organ of finger" EXACT [OBOL:automatic]
synonym: "muscle organ of hand digit" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit muscle organ" EXACT [OBOL:automatic]
xref: MA:0000624
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001500 ! muscle of hand
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0003665
name: tail muscle
namespace: uberon
def: "A muscle organ that is part of a tail [Obol]." [OBOL:automatic]
synonym: "caudal muscle" EXACT []
synonym: "muscle organ of post-vent region" EXACT [OBOL:automatic]
synonym: "muscle organ of tail" EXACT [OBOL:automatic]
synonym: "post-vent region muscle organ" EXACT [OBOL:automatic]
synonym: "tail muscle organ" EXACT [OBOL:automatic]
xref: AAO:0000081
xref: BTO:0001905
xref: MA:0000699
xref: SCTID:113230005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail

[Term]
id: UBERON:0003666
name: upper jaw molar
namespace: uberon
def: "A molar tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "molar tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch molar tooth" EXACT [OBOL:automatic]
synonym: "upper jaw molar tooth" EXACT [OBOL:automatic]
synonym: "upper primary molar tooth" EXACT [FMA:84210]
xref: EHDAA2:0002125
xref: EHDAA:8053
xref: EMAPA:17942
xref: FMA:55720
xref: MA:0001603
xref: ncithesaurus:Upper_Jaw_Molar
xref: SCTID:422318005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003267 ! tooth of upper jaw
is_a: UBERON:0003655 ! molar tooth
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0003667
name: lower jaw molar
namespace: uberon
def: "A molar tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw molar tooth" EXACT [OBOL:automatic]
synonym: "lower primary molar tooth" NARROW [FMA:84213]
synonym: "molar tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "molar tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch molar tooth" EXACT [OBOL:automatic]
xref: EHDAA2:0001025
xref: EHDAA:8017
xref: EMAPA:17921
xref: FMA:55721
xref: MA:0001602
xref: ncithesaurus:Lower_Jaw_Molar
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003268 ! tooth of lower jaw
is_a: UBERON:0003655 ! molar tooth
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0003671
name: anterior cruciate ligament
namespace: uberon
xref: FMA:44614
xref: GAID:122
xref: galen:AnteriorCruciateLigament
xref: MESH:A.02.513.514.100
xref: ncithesaurus:Anterior_Cruciate_Ligament
xref: OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003577 ! knee connective tissue
is_a: UBERON:0006659 ! cruciate ligament
is_a: UBERON:0008846 ! skeletal ligament
relationship: part_of UBERON:0001485 ! knee joint

[Term]
id: UBERON:0003672
name: dentition
namespace: uberon
comment: In FMA this is an anatomical set
synonym: "dentes" EXACT [FMA:75150, FMA:TA]
synonym: "set of teeth" EXACT [FMA:75150]
synonym: "teeth" EXACT [FMA:75150]
synonym: "teeth" RELATED []
synonym: "teeth set" EXACT [FMA:75150]
xref: AAO:0000126
xref: FMA:75150
xref: GAID:1249
xref: MESH:A.14.254
xref: ncithesaurus:Dentition
xref: OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA
xref: SCTID:245543004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0000165 {source="FMA"} ! mouth
relationship: part_of UBERON:0003129 {source="AAO"} ! skull

[Term]
id: UBERON:0003674
name: cuspid
namespace: uberon
def: "In mammalian oral anatomy, the canine teeth, also called cuspids, dogteeth, fangs, or (in the case of those of the upper jaw) eye teeth, are relatively long, pointed teeth. However, they can appear more flattened, causing them to resemble incisors and leading them to be called incisiform. They evolved and are used primarily for firmly holding food in order to tear it apart, and occasionally as weapons. They are often the largest teeth in a mammal's mouth. Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines." [Wikipedia:Canine_tooth]
synonym: "canine %28tooth%29" RELATED [Wikipedia:Canine_tooth]
synonym: "canine eminence" RELATED [Wikipedia:Canine_tooth]
synonym: "canine teeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "canine teeth" RELATED [GAID:1262]
synonym: "canine tooth" RELATED [GAID:1262]
synonym: "cuspid" EXACT [FMA:55636]
synonym: "cuspis dentis" EXACT [FMA:55636, FMA:TA]
synonym: "dens caninus" RELATED [Wikipedia:Canine_tooth]
synonym: "dogtooth %28anatomy%29" RELATED [Wikipedia:Canine_tooth]
synonym: "eye teeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "eye tooth" RELATED [Wikipedia:Canine_tooth]
synonym: "eyeteeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "eyetooth" RELATED [Wikipedia:Canine_tooth]
synonym: "fang" RELATED [Wikipedia:Canine_tooth]
xref: FMA:55636
xref: GAID:1262
xref: MESH:A.14.254.860.200
xref: ncithesaurus:Canine_Tooth
xref: SCTID:88719004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003675
name: tooth crown
namespace: uberon
synonym: "anatomical crown" EXACT [FMA:55623]
synonym: "corona dentis" EXACT [ncithesaurus:Corona_Dentis]
synonym: "crown" RELATED []
synonym: "crown of tooth" EXACT [FMA:55623]
synonym: "tooth crown" EXACT [FMA:55623]
xref: FMA:55623
xref: GAID:1275
xref: MESH:A.14.254.900.710
xref: ncithesaurus:Corona_Dentis
xref: SCTID:362106009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003676
name: patellar ligament
namespace: uberon
synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581]
synonym: "ligamentum patella" EXACT [FMA:44581]
xref: EMAPA:18509
xref: EMAPA:19139
xref: FMA:44581
xref: GAID:128
xref: galen:LigamentumPatellae
xref: MESH:A.02.513.514.475
xref: ncithesaurus:Patellar_Ligament
xref: SCTID:244639004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003577 ! knee connective tissue
is_a: UBERON:0008846 ! skeletal ligament
relationship: part_of UBERON:0001485 ! knee joint

[Term]
id: UBERON:0003677
name: tooth root
namespace: uberon
synonym: "radix corona" EXACT [FMA:55624]
synonym: "root of tooth" EXACT [FMA:55624]
synonym: "tooth root" EXACT [FMA:55624]
xref: FMA:55624
xref: GAID:1280
xref: MESH:A.14.254.900.750
xref: SCTID:245728004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: attached_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003678
name: tooth apex
namespace: uberon
synonym: "apex of tooth" EXACT [FMA:63000]
synonym: "apical foramen" RELATED [GAID:1281]
synonym: "tooth apex" EXACT [FMA:63000]
synonym: "tooth apice" RELATED [GAID:1281]
xref: FMA:63000
xref: GAID:1281
xref: MESH:A.14.254.900.750.700
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0003680
name: posterior cruciate ligament
namespace: uberon
xref: FMA:44617
xref: GAID:129
xref: galen:PosteriorCruciateLigament
xref: MESH:A.02.513.514.600
xref: ncithesaurus:Posterior_Cruciate_Ligament
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003577 ! knee connective tissue
is_a: UBERON:0006659 ! cruciate ligament
is_a: UBERON:0008846 ! skeletal ligament
relationship: part_of UBERON:0001485 ! knee joint

[Term]
id: UBERON:0003681
name: masticatory muscle
namespace: uberon
def: "Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed)" [MESH:A.02.633.567.600]
comment: Development notes: Masticatory muscles (MM) originate from the somitomeres. These muscles develop late and are not complete even at birth. Tongue muscles develop before masticatory muscles and complete by birth [http://php.med.unsw.edu.au/embryology]
synonym: "jaw muscle" EXACT [XAO:0003269]
synonym: "muscle of mastication" EXACT []
xref: AAO:0000247
xref: FMA:74060
xref: GAID:145
xref: MESH:A.02.633.567.600
xref: ncithesaurus:Muscle_of_the_Mastication
xref: SCTID:244769003
xref: XAO:0003269
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head
relationship: has_part UBERON:0001134 {source="MESH"} ! skeletal muscle tissue

[Term]
id: UBERON:0003682
name: palatal muscle
namespace: uberon
def: "The muscles of the palate are the glossopalatine, palatoglossus, levator palati(ni), musculus uvulae, palatopharyngeus, and tensor palati(ni)." [MESH:A.02.633.567.750, Wikipedia:Muscles_of_soft_palate_and_fauces]
comment: Editor notes: consider extra class for fauces. AO notes: see also FMA:71438
synonym: "muscle of palate" EXACT [FMA:46726]
synonym: "musculi palati mollis et faucium" EXACT []
synonym: "palatal muscle" EXACT [FMA:46726]
synonym: "palate muscle" EXACT [FMA:46726]
synonym: "palatine muscle" EXACT [FMA:46726]
xref: FMA:46726
xref: GAID:151
xref: MESH:A.02.633.567.750
xref: ncithesaurus:Palatal_Muscle
xref: SCTID:244794002
xref: SCTID:73711005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head

[Term]
id: UBERON:0003683
name: rotator cuff
namespace: uberon
synonym: "musculotendinous cuff" EXACT [FMA:37018]
synonym: "rotator cuff" EXACT [FMA:37018]
synonym: "tendinous cuff" EXACT [FMA:37018]
xref: FMA:37018
xref: GAID:160
xref: MESH:A.02.633.567.912
xref: ncithesaurus:Rotator_Cuff
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001467 ! shoulder

[Term]
id: UBERON:0003684
name: abdominal cavity
namespace: uberon
def: "body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity]
synonym: "cavitas abdominis" RELATED [GAID:17]
synonym: "cavity of abdominal compartment" EXACT [FMA:12266]
synonym: "cavity of compartment of abdomen" EXACT [FMA:12266]
synonym: "space of abdominal compartment" EXACT [FMA:12266]
xref: EFO:0000213
xref: FMA:12266
xref: GAID:17
xref: galen:AbdominalCavity
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png
xref: MESH:A.01.047.025
xref: ncithesaurus:Abdominal_Cavity
xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA
xref: SCTID:361294009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002323 ! body cavity
relationship: part_of UBERON:0000916 ! abdomen

[Term]
id: UBERON:0003685
name: cranial suture
namespace: uberon
def: "Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [FMA:71385, ISBN:3110148986, Wikipedia:Suture]
subset: uberon_slim
synonym: "cranium suture" EXACT [OBOL:automatic]
synonym: "suture" EXACT [FMA:71385]
synonym: "suture joint of skull" EXACT [SCTID:244509003]
synonym: "suture of cranium" EXACT [OBOL:automatic]
xref: FMA:7493
xref: GAID:211
xref: MA:0001475
xref: MESH:A.02.835.232.781.200
xref: SCTID:244509003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009198 {source="GO"} ! craniofacial suture
intersection_of: UBERON:0002209 ! fibrous joint
intersection_of: part_of UBERON:0003128 ! cranium
relationship: induced_by UBERON:0002363 {source="PMID:16496288"} ! dura mater
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0003686
name: tooth socket
namespace: uberon
def: "Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]." [Wikipedia:Dental_alveolus]
synonym: "alveolus dentali" RELATED [GAID:217]
synonym: "alveolus dentalis" RELATED [GAID:217]
synonym: "dental alveolus" EXACT [FMA:57490]
synonym: "dental alveolus" RELATED [GAID:217]
xref: FMA:57490
xref: GAID:217
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Alveole_zahn.jpg/200px-Alveole_zahn.jpg
xref: MESH:A.02.835.232.781.324.502.125.800
xref: ncithesaurus:Tooth_Socket
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0004103 {source="MESH-modified"} ! alveolar ridge

[Term]
id: UBERON:0003687
name: foramen magnum
namespace: uberon
def: "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]." [Wikipedia:Foramen_magnum]
subset: vertebrate_core
xref: AAO:0010826
xref: FMA:75306
xref: GAID:228
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray130.png/200px-Gray130.png
xref: MESH:A.02.835.232.781.572.434
xref: ncithesaurus:Foramen_Magnum
xref: OpenCyc:Mx4rwOm-FpwpEbGdrcN5Y29ycA
xref: SCTID:244679008
xref: TAO:0002045
xref: ZFA:0005387
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit
relationship: surrounded_by UBERON:0001676 ! occipital bone

[Term]
id: UBERON:0003689
name: sella turcica
namespace: uberon
def: "The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]." [Wikipedia:Sella_turcica]
comment: Editor notes: for consistency with FMA we have a separate class for the cavity of the sella turcica
synonym: "suprasellar" RELATED [Wikipedia:Sella_turcica]
synonym: "turkish saddle" RELATED [Wikipedia:Sella_turcica]
xref: FMA:54709
xref: GAID:231
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray145.png/200px-Gray145.png
xref: MESH:A.02.835.232.781.802.662
xref: ncithesaurus:Sella_Turcica
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0009639 {source="FMA"} ! body of sphenoid

[Term]
id: UBERON:0003690
name: sacrum
namespace: uberon
def: "The sacrum is a large, triangular bone at the base of the spine and at the upper and back part of the pelvic cavity, where it is inserted like a wedge between the two hip bones. Its upper part connects with the last lumbar vertebra, and bottom part with the coccyx (tailbone). In children, it consists of usually five unfused vertebrae which begin to fuse between ages 16-18 and are usually completely fused into a single bone by age 26. It is curved upon itself and placed obliquely (that is, tilted forward). It is kyphotic — that is, concave facing forwards. The base projects forward as the sacral promontory internally, and articulates with the last lumbar vertebra to form the prominent sacrovertebral angle. The central part is curved outward towards the posterior, allowing greater room for the pelvic cavity. [WP,unvetted]." [Wikipedia:Sacrum]
synonym: "os sacrum" RELATED [Wikipedia:Sacrum]
synonym: "os sacrum [vertebrae sacrales i - v]" EXACT [FMA:16202, FMA:TA]
synonym: "sacral bone" RELATED [FMA:16202]
synonym: "sacrum [sacral vertebrae i - v]" EXACT [FMA:16202]
synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202]
xref: AAO:0000552
xref: EFO:0003071
xref: FMA:16202
xref: GAID:241
xref: galen:Sacrum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ec/Gray95.png/200px-Gray95.png
xref: MESH:A.02.835.232.834.717
xref: ncithesaurus:Sacrum
xref: OpenCyc:Mx4rvmBKnJwpEbGdrcN5Y29ycA
xref: SCTID:264186006
property_value: "has_fused_element" UBERON:0001094
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0005179 ! pelvis organ
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0001130 {source="FMA"} ! vertebral column
relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005473 {source="FMA"} ! sacral region

[Term]
id: UBERON:0003692
name: acromioclavicular joint
namespace: uberon
def: "The acromioclavicular joint, or AC joint, is a joint at the top of the shoulder. It is the junction between the acromion (part of the scapula that forms the highest point of the shoulder) and the clavicle. [WP,unvetted]." [Wikipedia:Acromioclavicular_joint]
xref: FMA:25898
xref: GAID:249
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray326.png/200px-Gray326.png
xref: MESH:A.02.835.583.032
xref: ncithesaurus:Acromioclavicular_Joint
xref: OpenCyc:Mx4rwHhmSJwpEbGdrcN5Y29ycA
xref: SCTID:182166001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0001470 ! glenohumeral joint
relationship: part_of UBERON:0001467 ! shoulder

[Term]
id: UBERON:0003694
name: atlanto-axial joint
namespace: uberon
synonym: "atlanto axial joint" RELATED [GAID:250]
synonym: "atlantoaxial joint" RELATED [GAID:250]
xref: FMA:25524
xref: GAID:250
xref: MESH:A.02.835.583.097
xref: ncithesaurus:Atlanto-axial_Joint
xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA
xref: SCTID:361832004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint

[Term]
id: UBERON:0003695
name: metacarpophalangeal joint
namespace: uberon
def: "The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]." [Wikipedia:Metacarpophalangeal_joint]
comment: we follow FMA in making these joints part of digits
synonym: "metacarpal joint" EXACT [FMA:35246]
synonym: "metacarpo-phalangeal joint" EXACT [MA:0000453]
synonym: "mp joint" EXACT [FMA:35246]
xref: EMAPA:19302
xref: FMA:35246
xref: GAID:255
xref: galen:MetacarpoPhalangealJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/53/Gray337.png/200px-Gray337.png
xref: MA:0000453
xref: MESH:A.02.835.583.345.512
xref: ncithesaurus:Metacarpophalangeal_Joint
xref: OpenCyc:Mx4rwNt8wJwpEbGdrcN5Y29ycA
xref: SCTID:280995004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001489 ! joint of hand
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: attached_to UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: attached_to UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0003696
name: metatarsophalangeal joint
namespace: uberon
def: "The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral." [Wikipedia:Metatarsophalangeal_articulations]
comment: we follow FMA in making these joints part of digits
synonym: "metatarsal joint" EXACT [FMA:35222]
synonym: "metatarsalphalangeal joint" RELATED [Wikipedia:Metatarsophalangeal_articulations]
synonym: "metatarsophalangeal" RELATED [Wikipedia:Metatarsophalangeal_articulations]
synonym: "metatarsophalangeal articulation" RELATED [Wikipedia:Metatarsophalangeal_articulations]
xref: FMA:35222
xref: GAID:258
xref: galen:MetatarsoPhalangealJoint
xref: MESH:A.02.835.583.378.531
xref: ncithesaurus:Metatarsophalangeal_Joint
xref: OpenCyc:Mx4rwCtS0pwpEbGdrcN5Y29ycA
xref: SCTID:239747005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001487 ! joint of foot
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: attached_to UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: attached_to UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0003697
name: abdominal wall
namespace: uberon
def: "The abdominal wall represents the boundaries of the abdominal cavity. The abdominal wall is split into the posterior (back), lateral (sides) and anterior (front) walls. There is a common set of layers covering and forming all the walls: the deepest being the extraperitoneal fat, the parietal peritoneum, and a layer of fascia which has different names over where it covers (eg transversalis, psoas fascia). Superficial to these, but not present in the posterior wall are the three layers of muscle, the transversus abdominis (transverse abdominal muscle), the internal (obliquus internus) and the external oblique (obliquus externus)." [Wikipedia:Abdominal_wall]
synonym: "layers of the abdominal wall" RELATED [Wikipedia:Abdominal_wall]
synonym: "paries abdominalis" EXACT [Wikipedia:Abdominal_wall]
synonym: "wall of abdomen" EXACT [FMA:259054]
xref: FMA:10429
xref: FMA:259054
xref: GAID:26
xref: MESH:A.01.047.050
xref: ncithesaurus:Abdominal_Wall
xref: SCTID:181613000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen

[Term]
id: UBERON:0003698
name: subtalar joint
namespace: uberon
synonym: "articulatio subtalaris" EXACT [FMA:35198, FMA:TA]
synonym: "subtalar joint" EXACT [FMA:35198]
synonym: "talocalcaneal joint" RELATED [GAID:260]
xref: FMA:35198
xref: GAID:260
xref: MESH:A.02.835.583.378.831.780
xref: ncithesaurus:Subtalar_Joint
xref: SCTID:182213007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001487 ! joint of foot
is_a: UBERON:0002217 ! synovial joint

[Term]
id: UBERON:0003699
name: pubic symphysis
namespace: uberon
def: "the firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments." [MP:0009575, Wikipedia:Pubic_symphysis]
comment: In birds, the pubic symphysis is present only in the ostrich, and the two hip bones are usually widely separated, making it easier to lay large eggs - Romer, Alfred Sherwood; Parsons, Thomas S. (1977). The Vertebrate Body. Philadelphia, PA: Holt-Saunders International. pp. 188–192. ISBN 0-03-910284-X.
subset: organ_slim
synonym: "pubic symphyse" RELATED [GAID:267]
synonym: "symphisis pubis" RELATED [Wikipedia:Pubic_symphysis]
synonym: "symphysis pubis" EXACT [FMA:16950]
xref: FMA:16950
xref: GAID:267
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Gray321.png/200px-Gray321.png
xref: MESH:A.02.835.583.656
xref: ncithesaurus:Pubic_Symphisis
xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA
xref: SCTID:182200001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002216 {source="FMA"} ! symphysis
relationship: part_of UBERON:0002355 {source="FMA"} ! pelvis

[Term]
id: UBERON:0003700
name: temporomandibular joint
namespace: uberon
def: "A joint of the jaw. There are two TMJs, one on either side, working in unison. The name is derived from the two bones which form the joint: the upper temporal bone which is part of the cranium (skull), and the lower jaw bone called the mandible. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]." [Wikipedia:Temporomandibular_joint]
synonym: "articulatio temporomandibularis" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "dentary-squamosal joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html]
synonym: "squamosal-dentary joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html]
synonym: "tempero-mandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temperomandibular joint" EXACT [HP:0010754]
synonym: "temporalmandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular articulation" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "TMJ" EXACT [BTO:0003674, Wikipedia:Temporomandibular_joint]
xref: BTO:0003674
xref: EMAPA:19196
xref: FMA:54832
xref: GAID:272
xref: MA:0002899
xref: MESH:A.02.835.583.861
xref: SCTID:181814009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0003701
name: achilles tendon
namespace: uberon
def: "The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone." [Wikipedia:Achilles_tendon]
synonym: "achille's tendon" EXACT []
synonym: "calcaneal tendon" EXACT [FMA:51061]
synonym: "tendo calcaneus" EXACT [MA:0002993]
xref: FMA:51061
xref: GAID:277
xref: MA:0002993
xref: MESH:A.02.880.176
xref: ncithesaurus:Achilles_Tendon
xref: OpenCyc:Mx4rvVjNX5wpEbGdrcN5Y29ycA
xref: SCTID:181705009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000043 ! tendon
is_a: UBERON:0004270 ! lower leg connective tissue
is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament
relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae

[Term]
id: UBERON:0003703
name: extrahepatic bile duct
namespace: uberon
def: "the passages external to the liver for the conveyance of bile." [MP:0009498]
subset: vertebrate_core
synonym: "bile duct extrahepatic part" RELATED [MA:0002659]
synonym: "extrahepatic biliary system" RELATED [GAID:281]
xref: FMA:14678
xref: GAID:281
xref: MA:0002659
xref: MESH:A.03.159.183.079
xref: ncithesaurus:Extrahepatic_Bile_Duct
xref: SCTID:276158002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0002107
is_a: UBERON:0002394 ! bile duct

[Term]
id: UBERON:0003714
name: neural tissue
namespace: uberon
def: "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
comment: FMA definition includes vasculature
synonym: "nerve tissue" EXACT [FMA:9642]
synonym: "nervous tissue" EXACT [FMA:9642]
synonym: "portion of neural tissue" EXACT [FMA:9642]
xref: AAO:0000325
xref: AEO:0000123
xref: EHDAA2:0003123
xref: FMA:9642
xref: GAID:609
xref: MESH:A.08.561
xref: ncithesaurus:Nervous_Tissue
xref: OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ
xref: SCTID:91728009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0000479 ! tissue
disjoint_from: UBERON:0004755 ! skeletal tissue
relationship: part_of UBERON:0001016 ! nervous system

[Term]
id: UBERON:0003720
name: anterior cranial fossa
namespace: uberon
def: "The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae." [Wikipedia:Anterior_cranial_fossa]
synonym: "anterior fossa" BROAD []
xref: FMA:9682
xref: GAID:83
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png
xref: MESH:A.01.456.830.150
xref: ncithesaurus:Anterior_Fossa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004704 ! bone fossa
is_a: UBERON:0008789 ! cranial fossa
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0003722
name: middle cranial fossa
namespace: uberon
def: "The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]." [MESH:A.01.456.830.165, Wikipedia:Middle_cranial_fossa]
synonym: "middle fossa" BROAD [Wikipedia:Middle_cranial_fossa]
xref: FMA:54369
xref: GAID:84
xref: MESH:A.01.456.830.165
xref: ncithesaurus:Middle_Fossa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004704 ! bone fossa
is_a: UBERON:0008789 ! cranial fossa
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0003728
name: mediastinum
namespace: uberon
def: "The mediastinum is a non-delineated group of structures in the thorax, surrounded by loose connective tissue. It is the central compartment of the thoracic cavity. It contains the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. The mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm." [Wikipedia:Mediastinum]
synonym: "mediastinal part of chest" EXACT [FMA:9826]
xref: EFO:0003057
xref: FMA:9826
xref: GAID:94
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Mediastinum.png/200px-Mediastinum.png
xref: MESH:A.01.911.800.500
xref: ncithesaurus:Mediastinum
xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA
xref: SCTID:181217005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002224 ! thoracic cavity

[Term]
id: UBERON:0003729
name: mouth mucosa
namespace: uberon
def: "the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized." [Wikipedia:Oral_mucosa]
comment: ncit split mouth/oral mucosa into lip and buccal
synonym: "adult mouth mucosa" EXACT [OBOL:automatic]
synonym: "adult mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "adult mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "adult mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "buccal mucosa" RELATED [GAID:951]
synonym: "mouth mucosa" EXACT [FMA:59660]
synonym: "mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of mouth" EXACT [OBOL:automatic]
synonym: "mucosal lining of mouth" RELATED [MA:0002794]
synonym: "mucous membrane of adult mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of mouth" EXACT [FMA:59660]
synonym: "oral mucosa" RELATED [GAID:951]
synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660]
synonym: "organ mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "organ mucosa of mouth" EXACT [OBOL:automatic]
synonym: "tunica mucosa oris" EXACT [FMA:59660, FMA:TA]
xref: BTO:0002860
xref: FMA:59660
xref: GAID:951
xref: MA:0002794
xref: MESH:A.10.615.550.599
xref: ncithesaurus:Oral_Mucosa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:0003820
name: prostate bud
namespace: uberon
def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513]
comment: AR activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth. There are three phases of prostatic budding: (1) the specification phase, when instructive developmental cues define where buds will form in the UGS, (2) the initiation phase, when prostatic buds begin to form, and (3) the elongation phase, when proliferation, cell adhesion, and cell migration coordinate outgrowth of prostatic buds into UGM. Timing of prostatic bud formation and the quantity and pattern of buds that are formed in the UGS are strictly regulated [3, 4]. The position of prostatic buds as they emerge from the UGS in utero determines the arrangement of prostate ducts in adulthood.[PMID:18977204]
synonym: "prostate ductal progenitor" EXACT [PMID:18977204]
synonym: "prostatic bud" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005153 {source="GO:0060572"} ! epithelial bud
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: develops_from UBERON:0009847 {source="PMID:18977204"} ! prostate field
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0003821
name: metacarpal/metatarsal bone
namespace: uberon
synonym: "cannon bone" NARROW SENSU [UBERON:cjm]
synonym: "metacarpal or metatarsal bone" EXACT []
synonym: "metacarpal/metatarsal" EXACT []
synonym: "metapodium bone" EXACT [http://en.wiktionary.org/wiki/metapodial, UBERON:cjm]
xref: MA:0000301
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002495 {source="FMA"} ! long bone
is_a: UBERON:0003606 ! limb long bone
relationship: part_of UBERON:0006717 ! skeleton of autopod

[Term]
id: UBERON:0003822
name: forelimb stylopod
namespace: uberon
def: "A stylopod that is part of a forelimb [Obol]." [OBOL:automatic]
comment: WP states: anatomical usage, the term arm refers specifically to the segment between the shoulder and the elbow, while the segment between the elbow and wrist is the forearm. However, in common, literary, and historical usage, arm refers to the entire upper limb from shoulder to wrist. FMA uses the term Arm for this class, so we place it here. // comment: todo - check fore propodium in AAO // Naming conventions for pod terms under discussion within phenoscape group.  TODO - add distinct term for skeleton and place AAO class here
synonym: "arm" RELATED INCONSISTENT [FMA:24890]
synonym: "brachial region" EXACT []
synonym: "brachium" EXACT [VAO:0005057]
synonym: "forelimb stylopodial element" EXACT [MA:th]
synonym: "forelimb stylopodium" EXACT [OBOL:automatic]
synonym: "hind propodium" EXACT [AAO:0000887]
synonym: "hindlimb propodium" EXACT []
synonym: "proximal segment of free upper limb" EXACT []
synonym: "regio brachialis" EXACT [FMA:24890, FMA:TA]
synonym: "stylopod of arm" EXACT []
synonym: "stylopod of forelimb" EXACT []
synonym: "upper arm" EXACT [MA:0000035]
xref: AAO:0000887
xref: EHDAA2:0002112
xref: EHDAA:4186
xref: EHDAA:6234
xref: EMAPA:17424
xref: FMA:24890
xref: galen:Arm
xref: MA:0000035
xref: MESH:A.01.378.800.075
xref: ncithesaurus:Arm
xref: OpenCyc:Mx4rvVj0Z5wpEbGdrcN5Y29ycA
xref: SCTID:302538001
xref: VAO:0005057
xref: VHOG:0000343
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002472 ! stylopod
is_a: UBERON:0008785 ! upper limb segment
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0001460 {source="MA"} ! arm
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0003823
name: hindlimb zeugopod
namespace: uberon
def: "A zeugopod that is part of a hindlimb [Obol]." [OBOL:automatic]
comment: note that FMA:24979 denotes the middle segment (zeugopod), its placement here is correct. See obo-anatomy archives for discussion // Naming conventions for pod terms under discussion within phenoscape group.  TODO - add distinct term for skeleton and place AAO class here
synonym: "calf" NARROW []
synonym: "calf of leg" EXACT [FMA:24984]
synonym: "crus" EXACT [VAO:0005060]
synonym: "crus of hindlimb" EXACT []
synonym: "hind epipodium" RELATED INCONSISTENT []
synonym: "hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "hindlimb epipodium" EXACT []
synonym: "hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopodium" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb" EXACT [FMA:24979]
synonym: "leg" RELATED INCONSISTENT [FMA:24979, MESH:A.01.378.610.500]
synonym: "lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "lower leg" EXACT []
synonym: "middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "posterior curral region" EXACT [FMA:24984]
synonym: "posterior leg region" EXACT [FMA:24984]
synonym: "posterior part of leg" EXACT [FMA:24984]
synonym: "posterior region of leg" EXACT [FMA:24984]
synonym: "regio cruris posterior" EXACT [FMA:24984, FMA:TA]
synonym: "regio surae" EXACT [FMA:24984, FMA:TA]
synonym: "shank" EXACT [VAO:0005060]
synonym: "sura" EXACT [FMA:24984, FMA:TA]
synonym: "sural region" EXACT [FMA:24984]
synonym: "zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb" EXACT [OBOL:automatic]
xref: EFO:0003051
xref: EHDAA2:0001030
xref: EHDAA:5165
xref: EHDAA:6190
xref: EMAPA:17496
xref: FMA:24979
xref: FMA:24984
xref: galen:Leg
xref: MA:0000051
xref: MESH:A.01.378.610.500
xref: ncithesaurus:Leg
xref: OpenCyc:Mx4rvczZBpwpEbGdrcN5Y29ycA
xref: SCTID:244015008
xref: VAO:0005060
xref: VHOG:0000348
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002471 ! zeugopod
is_a: UBERON:0008784 ! lower limb segment
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0000978 {source="MA"} ! leg
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0003826
name: upper leg bone
namespace: uberon
def: "A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: MA:0000682
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005893 ! leg bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0003827
name: thoracic segment bone
namespace: uberon
def: "A bone that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "bone of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of thorax" EXACT [OBOL:automatic]
synonym: "thorax bone" EXACT [OBOL:automatic]
synonym: "thorax bone organ" EXACT [OBOL:automatic]
synonym: "upper body bone" RELATED [MA:0000559]
xref: MA:0000559
xref: SCTID:426649006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003463 ! trunk bone
is_a: UBERON:0005181 ! thoracic segment organ
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0003828
name: abdominal segment bone
namespace: uberon
def: "A bone that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk bone" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk bone organ" EXACT [OBOL:automatic]
synonym: "bone of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "bone organ of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000525
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003463 ! trunk bone
is_a: UBERON:0005173 ! abdominal segment organ
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk

[Term]
id: UBERON:0003829
name: urethra muscle
namespace: uberon
def: "A muscle organ that is part of a urethra [Obol]." [OBOL:automatic]
comment: AO notes: FMA class may not be equivalent
synonym: "muscle layer of urethra" RELATED [FMA:76909]
synonym: "muscle organ of urethra" EXACT [OBOL:automatic]
synonym: "urethra muscle organ" EXACT [OBOL:automatic]
synonym: "urethral muscle layer" RELATED [MA:0002649]
xref: FMA:76909
xref: MA:0002649
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra

[Term]
id: UBERON:0003830
name: thoracic segment muscle
namespace: uberon
def: "A muscle organ that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "muscle organ of thorax" EXACT [OBOL:automatic]
synonym: "thorax muscle organ" EXACT [OBOL:automatic]
synonym: "upper body muscle" RELATED [MA:0000561]
xref: MA:0000561
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005181 ! thoracic segment organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0003831
name: respiratory system muscle
namespace: uberon
def: "A muscle organ that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system muscle organ" EXACT [OBOL:automatic]
xref: MA:0001828
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0003832
name: esophagus muscle
namespace: uberon
def: "A muscle organ that is part of a esophagus [Obol]." [OBOL:automatic]
comment: todo - split muscle vs muscle layer? MA subdivides into skeletal/smooth, wth smooth divided into circular and longitudinal
synonym: "esophagus muscle organ" EXACT [OBOL:automatic]
synonym: "gullet muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of esophagus" EXACT [OBOL:automatic]
synonym: "muscle organ of gullet" EXACT [OBOL:automatic]
synonym: "muscle organ of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus muscle organ" EXACT [OBOL:automatic]
xref: FMA:62998
xref: MA:0002682
xref: SCTID:360961009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 {source="MA"} ! wall of esophagus

[Term]
id: UBERON:0003833
name: abdominal segment muscle
namespace: uberon
def: "A muscle organ that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000527
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005173 ! abdominal segment organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk

[Term]
id: UBERON:0003837
name: thoracic segment connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "connective tissue of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of thorax" EXACT [OBOL:automatic]
synonym: "thorax connective tissue" EXACT [OBOL:automatic]
synonym: "thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "upper body connective tissue" RELATED [MA:0000560]
xref: MA:0000560
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003586 ! trunk connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0003838
name: abdominal segment connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk connective tissue" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000526
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003586 ! trunk connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk

[Term]
id: UBERON:0003839
name: forelimb joint
namespace: uberon
def: "A limb joint that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb joint of limb" EXACT [OBOL:automatic]
synonym: "anteriormost limb limb joint" EXACT [OBOL:automatic]
synonym: "fore limb joint of limb" EXACT [OBOL:automatic]
synonym: "fore limb limb joint" EXACT [OBOL:automatic]
synonym: "forelimb joint of limb" EXACT [OBOL:automatic]
synonym: "forelimb limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of anteriormost limb" EXACT [OBOL:automatic]
synonym: "joint of limb of fore limb" EXACT [OBOL:automatic]
synonym: "joint of limb of forelimb" EXACT [OBOL:automatic]
synonym: "joint of limb of superior member" EXACT [OBOL:automatic]
synonym: "joint of limb of upper extremity" EXACT [OBOL:automatic]
synonym: "limb joint of anteriormost limb" EXACT [OBOL:automatic]
synonym: "limb joint of fore limb" EXACT [OBOL:automatic]
synonym: "limb joint of forelimb" EXACT [OBOL:automatic]
synonym: "limb joint of superior member" EXACT [OBOL:automatic]
synonym: "limb joint of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member joint of limb" EXACT [OBOL:automatic]
synonym: "superior member limb joint" EXACT [OBOL:automatic]
synonym: "upper extremity joint of limb" EXACT [OBOL:automatic]
synonym: "upper extremity limb joint" EXACT [OBOL:automatic]
xref: EMAPA:19204
xref: MA:0000614
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003657 ! limb joint
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0003840
name: hindlimb joint
namespace: uberon
def: "A limb joint that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb joint of limb" EXACT [OBOL:automatic]
synonym: "hind limb limb joint" EXACT [OBOL:automatic]
synonym: "hindlimb joint of limb" EXACT [OBOL:automatic]
synonym: "hindlimb limb joint" EXACT [OBOL:automatic]
synonym: "inferior member joint of limb" EXACT [OBOL:automatic]
synonym: "inferior member limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of hind limb" EXACT [OBOL:automatic]
synonym: "joint of limb of hindlimb" EXACT [OBOL:automatic]
synonym: "joint of limb of inferior member" EXACT [OBOL:automatic]
synonym: "joint of limb of lower extremity" EXACT [OBOL:automatic]
synonym: "joint of lower limb" EXACT [UBERON:cjm]
synonym: "limb joint of hind limb" EXACT [OBOL:automatic]
synonym: "limb joint of hindlimb" EXACT [OBOL:automatic]
synonym: "limb joint of inferior member" EXACT [OBOL:automatic]
synonym: "limb joint of lower extremity" EXACT [OBOL:automatic]
synonym: "lower extremity joint of limb" EXACT [OBOL:automatic]
synonym: "lower extremity limb joint" EXACT [OBOL:automatic]
xref: MA:0000662
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003657 ! limb joint
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0003841
name: autopod joint
namespace: uberon
def: "A limb joint that is part of an autopod [Obol]." [OBOL:automatic]
synonym: "autopod joint of limb" EXACT [OBOL:automatic]
synonym: "autopod limb joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment joint of limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of autopod" EXACT [OBOL:automatic]
synonym: "joint of limb of distal free limb segment" EXACT [OBOL:automatic]
synonym: "limb joint of autopod" EXACT [OBOL:automatic]
synonym: "limb joint of distal free limb segment" EXACT [OBOL:automatic]
synonym: "paw joint" RELATED [MA:0002715]
xref: MA:0002715
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003657 ! limb joint
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0002470 ! autopod region

[Term]
id: UBERON:0003842
name: neural tube lumen
namespace: uberon
alt_id: UBERON:0005713
comment: TODO - check
synonym: "cavity of neural tube" EXACT [UBERON:cjm]
synonym: "lumen of neural tube" EXACT [UBERON:cjm]
synonym: "neural lumen" RELATED [EHDAA:2889]
synonym: "neural tube neural lumen" EXACT [EHDAA2:0001269]
xref: AAO:0011073
xref: EHDAA2:0001269
xref: EHDAA:2889
xref: EHDAA:914
xref: EMAPA:16167
xref: EMAPA:16533
xref: VHOG:0001119
xref: XAO:0000252
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005082 ! tube lumen
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0001049 ! neural tube
relationship: surrounded_by UBERON:0001049 ! neural tube

[Term]
id: UBERON:0003852
name: rhombencephalon neural crest
namespace: uberon
subset: vertebrate_core
synonym: "neural crest hindbrain" EXACT [ZFA:0007063]
synonym: "rhombencephalic neural crest" EXACT [ZFA:0007063]
xref: EHDAA2:0001628
xref: EHDAA:362
xref: TAO:0007063
xref: VHOG:0001210
xref: ZFA:0007063
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002342 ! neural crest
intersection_of: UBERON:0002342 ! neural crest
intersection_of: developmentally_contributes_to UBERON:0002028 ! hindbrain
relationship: developmentally_contributes_to UBERON:0002028 ! hindbrain

[Term]
id: UBERON:0003853
name: spinal cord neural crest
namespace: uberon
xref: EHDAA:696
xref: EMAPA:16094
xref: EMAPA:16163
xref: EMAPA:16529
xref: EMAPA:16881
xref: VHOG:0001006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002342 ! neural crest
intersection_of: UBERON:0002342 ! neural crest
intersection_of: developmentally_contributes_to UBERON:0002240 ! spinal cord
relationship: developmentally_contributes_to UBERON:0002240 ! spinal cord

[Term]
id: UBERON:0003856
name: dental mesenchyme
namespace: uberon
def: "Mesenchyme enclosed by dental organ." [ZFIN:curator]
comment: TODO - neural crest contributions
subset: vertebrate_core
synonym: "dental organ mesenchyme" EXACT [OBOL:automatic]
synonym: "enamel organ mesenchyme" EXACT [OBOL:automatic]
synonym: "tooth enamel organ mesenchyme" EXACT [OBOL:automatic]
synonym: "tooth mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17920
xref: EMAPA:17923
xref: EMAPA:17941
xref: EMAPA:17944
xref: TAO:0005139
xref: VHOG:0001444
xref: ZFA:0005139
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005253 {source="ZFA"} ! head mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005176 ! tooth enamel organ
relationship: part_of UBERON:0005176 {source="ZFA"} ! tooth enamel organ

[Term]
id: UBERON:0003859
name: forelimb mesenchyme
namespace: uberon
def: "A mesenchyme that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb mesenchyme" EXACT [OBOL:automatic]
synonym: "fore limb mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of anteriormost limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of fore limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of forelimb" EXACT [OBOL:automatic]
synonym: "mesenchyme of superior member" EXACT [OBOL:automatic]
synonym: "mesenchyme of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member mesenchyme" EXACT [OBOL:automatic]
synonym: "upper extremity mesenchyme" EXACT [OBOL:automatic]
synonym: "wing mesenchyme" NARROW SENSU [Geisha:syn]
xref: VHOG:0001109
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009749 ! limb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0003860
name: hindlimb mesenchyme
namespace: uberon
def: "A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb mesenchyme" EXACT [OBOL:automatic]
synonym: "inferior member mesenchyme" EXACT [OBOL:automatic]
synonym: "lower extremity mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of hind limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of hindlimb" EXACT [OBOL:automatic]
synonym: "mesenchyme of inferior member" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower extremity" EXACT [OBOL:automatic]
xref: VHOG:0001074
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009749 ! limb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0003861
name: neural arch
namespace: uberon
def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [Wikipedia:Vertebral_arch]
comment: Taxon notes: tiny neural arches present in Hagfish (which lack a true vertebraal column)
subset: vertebrate_core
synonym: "arcus vertebra" EXACT [Wikipedia:Vertebral_arch]
synonym: "arcus vertebrae" EXACT PLURAL [Wikipedia:Vertebral_arch]
synonym: "arcus vertebrae (vertebralis)" EXACT [FMA:11946]
synonym: "dorsal arcocentrum" EXACT [ZFA:0001066]
synonym: "vertebra dorsal arch" RELATED [MA:0001453]
synonym: "vertebra neural arch" BROAD SENSU [MA:0001453]
xref: AAO:0000725
xref: EFO:0003618
xref: FMA:11946
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray82.png/200px-Gray82.png
xref: MA:0001453
xref: ncithesaurus:Arch_of_the_Vertebra
xref: OpenCyc:Mx4rwKYHvZwpEbGdrcN5Y29ycA
xref: SCTID:317373001
xref: TAO:0001066
xref: ZFA:0001066
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0010358 ! arch of centrum of vertebra
relationship: develops_from UBERON:0006063 ! cartilaginous neural arch

[Term]
id: UBERON:0003862
name: foot digit 4 phalanx
namespace: uberon
def: "A phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 4" EXACT [OBOL:automatic]
synonym: "foot digit 4 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 4 long bone of digit" EXACT [OBOL:automatic]
synonym: "fourth toe phalanx" EXACT [FMA:32901]
synonym: "long bone of digit of foot digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of fourth toe" EXACT [FMA:32901]
xref: EMAPA:19130
xref: FMA:32901
xref: MA:0001384
xref: ncithesaurus:Foot_Digit_4_Phalanx
xref: SCTID:361804008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: develops_from UBERON:0010683 ! toe 4 phalanx cartilage condensation
relationship: part_of UBERON:0003634 ! foot digit 4

[Term]
id: UBERON:0003863
name: foot digit 5 phalanx
namespace: uberon
def: "A phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 5" EXACT [OBOL:automatic]
synonym: "foot digit 5 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 5 long bone of digit" EXACT [OBOL:automatic]
synonym: "little toe phalanx" EXACT [FMA:32902]
synonym: "long bone of digit of foot digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of fifth digit of foot" EXACT [FMA:32902]
synonym: "phalanx of fifth toe" EXACT [FMA:32902]
synonym: "phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of little toe" EXACT [FMA:32902]
xref: EMAPA:19132
xref: FMA:32902
xref: MA:0001385
xref: ncithesaurus:Foot_Digit_5_Phalanx
xref: SCTID:361806005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: develops_from UBERON:0010684 ! toe 5 phalanx cartilage condensation
relationship: part_of UBERON:0003635 ! foot digit 5

[Term]
id: UBERON:0003864
name: middle phalanx of finger
namespace: uberon
def: "A middle phalanx that is part of a finger [Obol]." [OBOL:automatic]
synonym: "hand middle phalanx" EXACT [MA:0001394]
synonym: "middle phalanx of hand" EXACT []
xref: FMA:75817
xref: MA:0001394
xref: ncithesaurus:Middle_Phalanx_of_the_Hand
xref: SCTID:113223004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004301 ! middle phalanx
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0003865
name: distal phalanx of finger
namespace: uberon
def: "A distal phalanx that is part of a finger [Obol]." [OBOL:automatic]
synonym: "distal phalanx of hand" EXACT []
synonym: "hand distal phalanx" EXACT [MA:0001388]
synonym: "terminal phalanx of hand" EXACT [UBERON:cjm]
synonym: "ungual phalanx of hand" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
xref: FMA:75818
xref: MA:0001388
xref: ncithesaurus:Distal_Phalanx_of_Hand
xref: SCTID:182001007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004300 ! distal phalanx
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0009552 ! distal segment of hand digit

[Term]
id: UBERON:0003866
name: middle phalanx of toe
namespace: uberon
def: "A middle phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "foot middle phalanx" EXACT [MA:0001386]
synonym: "middle phalanx of foot" EXACT []
xref: FMA:75829
xref: MA:0001386
xref: SCTID:83207005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004301 ! middle phalanx
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0003867
name: distal phalanx of toe
namespace: uberon
def: "A distal phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "distal phalanx of foot" EXACT []
synonym: "foot distal phalanx" EXACT [MA:0001380]
synonym: "terminal phalanx of foot" EXACT [UBERON:cjm]
synonym: "terminal phalanx of hindlimb" EXACT [UBERON:cjm]
synonym: "ungual phalanx of foot" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
synonym: "ungual phalanx of hindlimb" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
xref: FMA:75830
xref: MA:0001380
xref: ncithesaurus:Distal_Phalanx_of_Foot
xref: SCTID:361797001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004300 ! distal phalanx
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0009553 ! distal segment of foot digit

[Term]
id: UBERON:0003868
name: proximal phalanx of toe
namespace: uberon
def: "A proximal phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "foot proximal phalanx" EXACT [MA:0001387]
synonym: "proximal phalanx of foot" EXACT []
xref: FMA:75828
xref: MA:0001387
xref: ncithesaurus:Proximal_Phalanx_of_Foot
xref: SCTID:85533000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004302 ! proximal phalanx
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0003886
name: body cavity precursor
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: develops_into UBERON:0002323 ! body cavity
relationship: develops_into UBERON:0002323 ! body cavity
relationship: surrounded_by UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0003887
name: intraembryonic coelom
namespace: uberon
def: "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom]
comment: TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. Todo: check ZFA, which appears to be a structure present in adults
synonym: "somatic coelom" EXACT [Wikipedia:Intraembryonic_coelom]
xref: EHDAA:251
xref: EMAPA:16088
xref: ncithesaurus:Intraembryonic_Coelom
xref: VHOG:0000316
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003886 ! body cavity precursor
relationship: develops_from UBERON:0003081 {source="Wikipedia"} ! lateral plate mesoderm

[Term]
id: UBERON:0003889
name: fallopian tube
namespace: uberon
def: "Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens." [Wikipedia:Fallopian_tube]
comment: http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology
subset: uberon_slim
synonym: "fallopian tubes" RELATED []
synonym: "mammalian oviduct" EXACT [http://sourceforge.net/tracker/?func=detail&aid=3293337&group_id=36855&atid=440764]
synonym: "uterine tube" RELATED []
xref: EFO:0000974
xref: EV:0100112
xref: FMA:18245
xref: GAID:365
xref: galen:FallopianTube
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png
xref: MA:0000385
xref: MESH:A.05.360.319.114.373
xref: ncithesaurus:Fallopian_Tube
xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA
xref: SCTID:181463001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000993 ! oviduct
relationship: connects UBERON:0000995 ! uterus
relationship: connects UBERON:0001179 ! peritoneal cavity
relationship: develops_from UBERON:0003890 ! Mullerian duct
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0002355 ! pelvis

[Term]
id: UBERON:0003890
name: Mullerian duct
namespace: uberon
alt_id: UBERON:0005318
def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]." [GO:0061205, http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html, Wikipedia:Mullerian_duct]
comment: Development notes: Sertoli cells secrete anti-Mullerian hormone (AMH) inducing the demise of this duct
synonym: "Müllerian duct" EXACT []
synonym: "paramesonephric duct" EXACT [EMAPA:27665]
xref: AAO:0010141
xref: EMAPA:27665
xref: GAID:1309
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: MESH:A.16.254.570
xref: ncithesaurus:Mullerian_Duct
xref: RETIRED_EHDAA2:0001399
xref: SCTID:308802006
xref: VHOG:0001199
xref: XAO:0000330
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0003894
name: liver primordium
namespace: uberon
def: "A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755]
comment: Todo - check hepatic plate; check syns
subset: vertebrate_core
synonym: "embryological hepatic plate" EXACT [UBERON:cjm]
synonym: "hepatic plate" RELATED [EHDAA2:0000744]
synonym: "liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124]
synonym: "primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver]
xref: AAO:0011058
xref: EFO:0003428
xref: EHDAA2:0000744
xref: EHDAA:973
xref: EMAPA:16847
xref: ncithesaurus:Hepatic_Cord
xref: ncithesaurus:Primordium_of_the_Liver
xref: TAO:0000124
xref: XAO:0003266
xref: ZFA:0000124
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 {source="XAO"} ! primordium
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0002107 ! liver
relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut
relationship: develops_into UBERON:0002107 ! liver
relationship: part_of UBERON:0000925 {source="EHDAA2:0000572"} ! endoderm

[Term]
id: UBERON:0003895
name: hypaxial myotome region
namespace: uberon
def: "Portion of myotome that is ventral to the horizontal septum" [ISBN10:0073040584]
synonym: "body wall muscle" RELATED [XAO:0003228]
synonym: "hypaxial myotome region" EXACT [ZFA:0001085]
xref: TAO:0001085
xref: ZFA:0001085
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003082 ! myotome

[Term]
id: UBERON:0003896
name: muscle of body wall
namespace: uberon
def: "A muscle organ that is part of a body wall [Obol]." [OBOL:automatic]
comment: TODO - check trunk vs wall of trunk. Check hypaxial myotome region
synonym: "body wall muscle" EXACT []
synonym: "body wall muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of body wall" EXACT [OBOL:automatic]
synonym: "muscle organ of Trunk wall" EXACT [OBOL:automatic]
synonym: "muscle organ of Wall of trunk" EXACT [OBOL:automatic]
synonym: "Trunk wall muscle organ" EXACT [OBOL:automatic]
synonym: "wall muscle" RELATED [BTO:0001863]
synonym: "Wall of trunk muscle organ" EXACT [OBOL:automatic]
xref: ANISEED:1235296
xref: BTO:0001863
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000309 ! body wall
relationship: develops_from UBERON:0003082 ! myotome
relationship: part_of UBERON:0000309 ! body wall

[Term]
id: UBERON:0003897
name: axial muscle
namespace: uberon
def: "A skeletal muscle of the trunk or head." []
xref: EHDAA2:0000159
xref: EHDAA:5982
xref: EMAPA:18166
xref: EMAPA:18167
xref: RETIRED_EHDAA2:0000160
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
union_of: UBERON:0003898 ! skeletal muscle of trunk
union_of: UBERON:0003899 ! skeletal muscle of head

[Term]
id: UBERON:0003898
name: skeletal muscle of trunk
namespace: uberon
def: "A skeletal muscle of the trunk." []
synonym: "skeletal muscle of torso" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of torso" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of trunk" EXACT [OBOL:automatic]
synonym: "torso skeletal muscle" EXACT [OBOL:automatic]
synonym: "torso skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "trunk skeletal muscle" EXACT [OBOL:automatic]
synonym: "trunk skeletal muscle tissue" EXACT [OBOL:automatic]
xref: SCTID:244848007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003897 ! axial muscle
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0003899
name: skeletal muscle of head
namespace: uberon
def: "A skeletal muscle of the head." []
synonym: "adult head skeletal muscle" EXACT [OBOL:automatic]
synonym: "adult head skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "head skeletal muscle" EXACT [OBOL:automatic]
synonym: "head skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of adult head" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of adult head" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of head" EXACT [OBOL:automatic]
xref: SCTID:244718003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003897 ! axial muscle
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0003900
name: epaxial myotome region
namespace: uberon
def: "Portion of myotome that is dorsal to the horizontal septum" [ISBN10:0073040584]
synonym: "epaxial myotome regions" EXACT PLURAL [ZFA:0001084]
xref: TAO:0001084
xref: ZFA:0001084
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003082 ! myotome

[Term]
id: UBERON:0003902
name: retinal neural layer
namespace: uberon
def: "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216]
comment: editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node.
subset: vertebrate_core
synonym: "neural layer of retina" EXACT [FMA:58628]
synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046]
synonym: "neural retinal epithelium" RELATED [MA:000027]
synonym: "neuroretina" EXACT [ZFA:0000046]
synonym: "stratum nervosum (retina)" EXACT [FMA:58628]
xref: AAO:0011095
xref: BTO:0000929
xref: EHDAA2:0001253
xref: EHDAA:4763
xref: EMAPA:17171
xref: EMAPA:18590
xref: FMA:58628
xref: MA:0000277
xref: ncithesaurus:Neural_Retina
xref: TAO:0000046
xref: VHOG:0000535
xref: XAO:0003216
xref: ZFA:0000046
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001781 ! layer of retina
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: develops_from UBERON:0005425 ! presumptive neural retina
relationship: develops_from UBERON:0005425 ! presumptive neural retina
relationship: induced_by UBERON:0005426 ! lens vesicle

[Term]
id: UBERON:0003912
name: chitinous tooth
namespace: uberon
def: "tooth-like structure composed of chitin." []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003913 ! tooth-like structure

[Term]
id: UBERON:0003913
name: tooth-like structure
namespace: uberon
def: "hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food." [GOC:cjm]
comment: see dermal denticle
subset: grouping_class
synonym: "tooth-like organ" EXACT [GOC:cjm]
xref: HAO:0001019
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 ! skeletal element

[Term]
id: UBERON:0003914
name: epithelial tube
namespace: uberon
def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790]
xref: AEO:0000114
xref: EHDAA2:0003114
xref: FBbt:00007474
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000025 ! tube
is_a: UBERON:0000483 ! epithelium

[Term]
id: UBERON:0003918
name: kidney mesenchyme
namespace: uberon
def: "Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074]
comment: check this
synonym: "mesenchyme of kidney" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_into UBERON:0002113 ! kidney
relationship: develops_into UBERON:0002113 ! kidney

[Term]
id: UBERON:0003920
name: venous blood vessel
namespace: uberon
synonym: "segment of venous tree organ" EXACT [FMA:86188]
synonym: "venous tree organ segment" EXACT [FMA:86188]
xref: FMA:86188
xref: MA:0000066
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004582 ! venous system

[Term]
id: UBERON:0003921
name: pancreas primordium
namespace: uberon
def: "embryonic structure that develops into pancreatic bud." [http://en.wikipedia.org/wiki/Pancreas#Embryological_development]
comment: AO notes: in EHDAA2 this has dorsal and ventral primordia as parts. the buds are part of the primordium, with the ducts developing from the buds; only parenchyma and ducts have contribution from buds. Terminology notes: revisit after standardizing terms 'primordium', 'anlagen', 'bud'
subset: vertebrate_core
synonym: "pancreatic anlage" RELATED []
synonym: "pancreatic primordium" EXACT []
synonym: "primordial pancreas" RELATED [FMA:79792]
xref: EFO:0003434
xref: EHDAA2:0001382
xref: EHDAA:2163
xref: EMAPA:17066
xref: FMA:79792
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: TAO:0000254
xref: XAO:0001101
xref: ZFA:0000254
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 {source="EHDAA2"} ! primordium
relationship: develops_from UBERON:0000925 {source="Wikipedia"} ! endoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0007026 ! primitive gut

[Term]
id: UBERON:0003922
name: pancreatic bud
namespace: uberon
def: "The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]. In humans, an embryonic structure that is an outgrowth of the duodenum during embryogenesis - joins together to form the adult pancreas[WP]." [PMID:16417468, Wikipedia:Pancreatic_bud]
synonym: "pancreatic anlage" RELATED []
xref: EFO:0003470
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/Suckale08FBS_fig1_pancreas_development.jpeg/300px-Suckale08FBS_fig1_pancreas_development.jpeg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: ncithesaurus:Pancreatic_Bud
xref: SCTID:360398004
xref: TAO:0001390
xref: ZFA:0001390
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from UBERON:0001041 {source="Wikipedia:Pancreas#Embryological_development"} ! foregut
relationship: develops_from UBERON:0001555 ! digestive tract
relationship: develops_from UBERON:0002114 {exception="zebrafish", source="Wikipedia:Pancreatic_bud"} ! duodenum
relationship: develops_from UBERON:0009497 {source="EHDAA2-inferred"} ! epithelium of foregut-midgut junction
relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium

[Term]
id: UBERON:0003923
name: dorsal pancreatic bud
namespace: uberon
def: "pancreatic bud that gives rise to the accessory pancreatic duct." [Wikipedia:Pancreatic_bud]
subset: vertebrate_core
synonym: "dorsal pancreatic anlage" RELATED []
synonym: "pancreas dorsal primordium duct bud" EXACT [EHDAA2:0001385]
synonym: "pancreas primordium dorsal bud" EXACT []
synonym: "posterior pancreatic anlage" RELATED []
synonym: "posterior pancreatic bud" RELATED []
xref: AAO:0011031
xref: EFO:0003465
xref: EHDAA2:0001385
xref: EMAPA:17067
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: SCTID:361435005
xref: TAO:0001370
xref: VHOG:0001428
xref: XAO:0000467
xref: ZFA:0001370
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003922 ! pancreatic bud
relationship: develops_from UBERON:0001045 {source="XAO"} ! midgut
relationship: part_of UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium

[Term]
id: UBERON:0003924
name: ventral pancreatic bud
namespace: uberon
def: "pancreatic bud that gives rise to the major pancreatic duct." [Wikipedia:Pancreatic_bud]
comment: Development notes: the ventral pancreas and liver are derived from a common precursor cell population[PMID:16417468]. TODO - add this relationship. // The ventral pancreatic bud becomes the head and uncinate process, and comes from the hepatic diverticulum[WP]
subset: vertebrate_core
synonym: "anterior pancreatic anlage" RELATED []
synonym: "anterior pancreatic bud" RELATED []
synonym: "pancreas primordium ventral bud" EXACT []
synonym: "pancreas ventral primordium duct bud" EXACT [EHDAA2:0001389]
synonym: "ventral pancreatic anlage" RELATED []
xref: AAO:0011111
xref: EFO:0003464
xref: EHDAA2:0001389
xref: EMAPA:17256
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: SCTID:361437002
xref: TAO:0001369
xref: VHOG:0001429
xref: XAO:0001103
xref: ZFA:0001369
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003922 ! pancreatic bud
relationship: develops_from UBERON:0008835 {source="PMID:16417468", source="WP"} ! hepatic diverticulum
relationship: part_of UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium

[Term]
id: UBERON:0003928
name: digestive system duct
namespace: uberon
def: "A duct that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "duct of digestive system" EXACT [OBOL:automatic]
synonym: "duct of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system duct" EXACT [OBOL:automatic]
xref: TAO:0005162
xref: ZFA:0005162
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0003929
name: gut epithelium
namespace: uberon
def: "An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive tract epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gut" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "epithelium of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelium of gut" EXACT [OBOL:automatic]
synonym: "epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelium" EXACT [OBOL:automatic]
xref: BTO:0000956
xref: EHDAA2:0004567
xref: ncithesaurus:Gut_Epithelium
xref: TAO:0005123
xref: XAO:0003200
xref: ZFA:0005123
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005911 ! endo-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0003932
name: chondrocranium cartilage
namespace: uberon
def: "A cartilage that is part of a chondrocranium [Obol]." [OBOL:automatic]
synonym: "cartilage of chondrocranium" EXACT [OBOL:automatic]
synonym: "neurocranium cartilage" EXACT [ZFA:0001461]
xref: EFO:0003690
xref: TAO:0001461
xref: ZFA:0001461
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003933 ! cranial cartilage
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0003933
name: cranial cartilage
namespace: uberon
def: "A cartilage that is part of a cranium [Obol]." [OBOL:automatic]
synonym: "cartilage of cranium" EXACT [OBOL:automatic]
synonym: "cranium cartilage" EXACT [OBOL:automatic]
xref: TAO:0001458
xref: ZFA:0001458
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0003128 ! cranium
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0003937
name: sex gland
namespace: uberon
def: "any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction" [MP:0000653]
subset: organ_slim
synonym: "genitalia gland" EXACT [OBOL:automatic]
synonym: "gland of genitalia" EXACT [OBOL:automatic]
synonym: "gland of reproductive system" EXACT [OBOL:automatic]
synonym: "reproductive gland" EXACT [MA:0001751]
synonym: "reproductive system gland" EXACT [OBOL:automatic]
xref: MA:0001751
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002530 ! gland
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0000990 ! reproductive system

[Term]
id: UBERON:0003954
name: squamo-parietal suture
namespace: uberon
def: "the articulation of the squamous portion of the temporal bones with the parietal bones" [MP:0003844]
synonym: "squamoparietal suture" EXACT []
synonym: "squamoparietal suture of skull" EXACT []
xref: EMAPA:19228
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 ! cranial suture

[Term]
id: UBERON:0003955
name: molar crown
namespace: uberon
def: "the part of a molar that is covered by enamel" [MP:0003932]
synonym: "crown of molar tooth" EXACT [FMA:85301]
synonym: "molar tooth crown" EXACT [FMA:85301]
synonym: "molar tooth tooth crown" EXACT [OBOL:automatic]
synonym: "tooth crown of molar tooth" EXACT [OBOL:automatic]
xref: FMA:85301
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003675 ! tooth crown
intersection_of: UBERON:0003675 ! tooth crown
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0003655 ! molar tooth

[Term]
id: UBERON:0003956
name: aqueous drainage system
namespace: uberon
def: "the structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [MP:0005198]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001768 ! vascular layer of eyeball

[Term]
id: UBERON:0003958
name: long bone epiphyseal ossification zone
namespace: uberon
def: "The layer of the epiphyseal plate where new bone matrix is deposited" [MP:0006399]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002495 ! long bone
relationship: part_of UBERON:0002516 ! epiphyseal plate

[Term]
id: UBERON:0003959
name: rete testis
namespace: uberon
def: "the network of canals at the termination of the straight tubules in the mediastinum testis[MP]. Rete testis is an anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]." [MP:0006416, Wikipedia:Rete_testis]
comment: Editors note: add more specific classification e.g. anastomosing network - consider FMA:3726
synonym: "Haller's rete" EXACT [FMA:19834]
xref: EMAPA:18332
xref: FMA:19834
xref: GAID:399
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png
xref: MESH:A.05.360.444.849.600
xref: ncithesaurus:Rete_Testis
xref: SCTID:279617009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0005156 ! reproductive structure
relationship: channels_from UBERON:0001343 ! seminiferous tubule of testis
relationship: channels_into UBERON:0006946 ! efferent duct
relationship: develops_from UBERON:0005297 {source="Wikipedia"} ! testis sex cord
relationship: part_of UBERON:0005051 ! mediastinum testis

[Term]
id: UBERON:0003960
name: styloid process of temporal bone
namespace: uberon
def: "slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments" [MP:0008023, Wikipedia:Temporal_styloid_process]
comment: Disease notes: Eagle's syndrome
synonym: "processus styloideus ossis temporalis" EXACT [Wikipedia:Temporal_styloid_process]
synonym: "styloid process" EXACT [FMA:52877]
synonym: "styloid process of petrous part of temporal bone" EXACT [FMA:52877]
synonym: "temporal styloid process" EXACT [Wikipedia:Temporal_styloid_process]
xref: FMA:52877
xref: SCTID:138874009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage
relationship: part_of UBERON:0001678 ! temporal bone

[Term]
id: UBERON:0003966
name: gonial bone
namespace: uberon
def: "investing bone that lies on the surface of the malleus." [MP:0008380]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001686 ! auditory ossicle

[Term]
id: UBERON:0003971
name: interfrontal bone
namespace: uberon
def: "a bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present" [MP:0008818]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! viscerocranium bone
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0003973
name: nasal concha of ethmoid bone
namespace: uberon
def: "One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals" [MP:0008971]
comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here
synonym: "ethmo-turbinate" EXACT []
synonym: "ethmoturbinate" EXACT [MP:0008971]
synonym: "nasal turbinate of ethmoid bone" EXACT []
synonym: "turbinate of ethmoid bone" EXACT []
xref: FMA:57456
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001762 ! nasal concha
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0001762 ! nasal concha
intersection_of: part_of UBERON:0001679 ! ethmoid
relationship: develops_from UBERON:0006332 {source="ISBN10:1588903958"} ! nasal capsule
relationship: part_of UBERON:0001679 ! ethmoid

[Term]
id: UBERON:0003975
name: internal female genitalia
namespace: uberon
def: "the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209]
subset: organ_slim
synonym: "female internal genitalia" EXACT [FMA:45654]
synonym: "internal female genital organ" EXACT [BTO:0003099]
synonym: "internal genitalia of female reproductive system" EXACT [OBOL:automatic]
synonym: "organa genitalia feminina interna" RELATED [BTO:0003099]
xref: BTO:0003099
xref: FMA:45654
xref: SCTID:303518005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003134 ! female reproductive organ
is_a: UBERON:0004175 ! internal reproductive organ
intersection_of: UBERON:0004175 ! internal reproductive organ
intersection_of: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000474 ! female reproductive system

[Term]
id: UBERON:0003978
name: valve
namespace: uberon
subset: grouping_class
synonym: "anatomical valve" EXACT [FMA:67611]
xref: EHDAA2:0004046
xref: EHDAA:1892
xref: EHDAA:4406
xref: FMA:67611
xref: galen:Valve
xref: OpenCyc:Mx4rvqiwE5wpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part

[Term]
id: UBERON:0003983
name: conus arteriosus
namespace: uberon
def: "a conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]." [MP:0009464, Wikipedia:Conus_arteriosus]
comment: Terminology notes: we use the term CA for the anterior chamber if it is composed of cardiac muscle, contractile, and contains conal valves internally[Kardong] Taxon notes: Kardong says absent in adult tetrapods, check AAO
xref: AAO:0010250
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0002080 ! heart right ventricle

[Term]
id: UBERON:0003984
name: uterine tube infundibulum
namespace: uberon
def: "the funnel-like expansion of the abdominal extremity of the uterine tube" [MP:0009466, Wikipedia:Infundibulum_of_uterine_tube]
synonym: "infundibulum of fallopian tube" EXACT [FMA:18307]
synonym: "infundibulum of oviduct" EXACT [FMA:18307]
synonym: "infundibulum of uterine tube" EXACT [FMA:18307]
xref: EMAPA:29897
xref: FMA:18307
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: SCTID:362262001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0003889 ! fallopian tube

[Term]
id: UBERON:0003995
name: subarcuate fossa
namespace: uberon
def: "the irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]. In the temporal bone, above and between the aquæductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP]." [MP:0009822]
xref: FMA:56418
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004704 ! bone fossa
is_a: UBERON:0008789 ! cranial fossa
relationship: part_of UBERON:0001678 ! temporal bone

[Term]
id: UBERON:0003996
name: arcus anterior
namespace: uberon
alt_id: UBERON:0005209
def: "The anterior arch of the atlas forms about one-fifth of the ring of the atlas: its anterior surface is convex, and presents at its center the anterior tubercle for the attachment of the Longus colli muscles; posteriorly it is concave, and marked by a smooth, oval or circular facet (fovea dentis), for articulation with the odontoid process (dens) of the axis[WP]. The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]." [MP:0009879, Wikipedia:Anterior_arch_of_atlas]
synonym: "anterior arch of atlas" EXACT [MA:0002954]
synonym: "arcus anterior atlantis" EXACT [MA:0002954]
synonym: "cervical vertebra 1 arcus anterior" EXACT [MA:0002954]
xref: FMA:23976
xref: MA:0002954
xref: SCTID:181891000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001092 ! first cervical vertebra

[Term]
id: UBERON:0003997
name: hyoid bone greater horn
namespace: uberon
def: "the larger and more lateral of the paired processes on either side of the hyoid bone" [MP:0009913]
comment: In humans, the greater cornua are the larger, more lateral projections from the left and right borders of the body of hyoid bone. They are in contrast to the lesser cornua, which also occur in pairs but are comparatively smaller and conical in shape. The greater cornua are derived from the third pharyngeal arches. [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "cornu majus" EXACT [FMA:59496]
synonym: "cornu majus ossis hyoidei" EXACT [FMA:59496, FMA:TA]
synonym: "cornua majora" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "greater cornu" EXACT [FMA:59496]
synonym: "greater cornua" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "greater cornua" RELATED [Wikipedia:Hyoid_bone]
synonym: "greater horn" EXACT [FMA:59496]
synonym: "greater horn of hyoid" EXACT [FMA:59496]
synonym: "greater horn of hyoid bone" EXACT [FMA:59496]
synonym: "greater horn of the hyoid" RELATED [Wikipedia:Hyoid_bone]
synonym: "hyoid bone greater cornu" RELATED [MA:0002959]
synonym: "hyoid bone superior horn" RELATED [MA:0002959]
synonym: "hyoid bone upper horn" RELATED [MA:0002959]
synonym: "tyrohal" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "tyrohals" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
xref: EMAPA:18651
xref: EMAPA:18841
xref: FMA:59496
xref: MA:0002959
xref: SCTID:369008008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3

[Term]
id: UBERON:0003998
name: hyoid bone lesser horn
namespace: uberon
def: "shorter and more medial of the paired processes on either side of the hyoid bone" [MP:0009914]
synonym: "cornu minus" EXACT [FMA:59499]
synonym: "cornu minus ossis hyoidei" EXACT [FMA:59499, FMA:TA]
synonym: "hyoid bone lesser cornu" RELATED [MA:0002960]
synonym: "hyoid bone lower horn" RELATED [MA:0002960]
synonym: "lesser cornu" EXACT [FMA:59499]
synonym: "lesser cornu of hyoid" EXACT []
synonym: "lesser cornua" EXACT [http://www.biology-online.org/dictionary/Lesser_cornua]
synonym: "lesser horn" EXACT [FMA:59499]
synonym: "lesser horn of hyoid" EXACT [FMA:59499]
synonym: "lesser horn of hyoid bone" EXACT [FMA:59499]
xref: EMAPA:18652
xref: EMAPA:18842
xref: FMA:59499
xref: MA:0002960
xref: SCTID:369007003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage

[Term]
id: UBERON:0003999
name: hyoid bone body
namespace: uberon
def: "the main curve of the hyoid bone, from which the horns extend" [MP:0009917, Wikipedia:Body_of_hyoid_bone]
synonym: "base of hyoid bone" RELATED [MA:0002958]
synonym: "basihyal bone" RELATED [MA:0002958]
synonym: "basihyoid bone" RELATED [MA:0002958]
synonym: "body of hyoid bone" RELATED [MA:0002958]
synonym: "hyoid bone base" RELATED [MA:0002958]
xref: EMAPA:18653
xref: EMAPA:18843
xref: FMA:59495
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png
xref: MA:0002958
xref: SCTID:369006007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010273 {source="cjm"} ! zone of hyoid bone

[Term]
id: UBERON:0004012
name: golgi tendon organ
namespace: uberon
def: "the sensory organ in muscle that is involved in regulating muscle tension" [MP:0000999]
synonym: "neurotendinous ending" EXACT [FMA:83608]
synonym: "neurotendinous organ of golgi" EXACT [FMA:83608]
xref: FMA:83608
xref: ncithesaurus:Golgi_Tendon_Organ
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0004016
name: dermatome
namespace: uberon
def: "the mesoderm that is derived from the somite that is fated to become the dermis[MP]" [MP:0003940, Wikipedia:Dermatomal_mesenchyme]
comment: Not to be confused with 'dermatome segment of skin'.
synonym: "cutis plate" EXACT [Wikipedia:Cutis_plate]
synonym: "dermatomal mesenchyme" EXACT [Wikipedia:Cutis_plate]
xref: AAO:0011028
xref: EHDAA2:0003428
xref: EHDAA:1719
xref: EHDAA:1725
xref: EHDAA:1731
xref: EHDAA:1737
xref: ncithesaurus:Dermatome
xref: XAO:0000220
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0004290 {source="EHDAA2"} ! dermomyotome
relationship: part_of UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0004054
name: internal male genitalia
namespace: uberon
def: "the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
comment: Editor note: consider splitting genitalia from genital organ
subset: organ_slim
synonym: "internal male genital organ" EXACT [BTO:0003096]
synonym: "male internal genitalia" EXACT [FMA:45655]
synonym: "organa genitalia masculina interna" RELATED [BTO:0003096]
xref: BTO:0003096
xref: FMA:45655
xref: SCTID:310536002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003135 ! male reproductive organ
is_a: UBERON:0004175 ! internal reproductive organ
intersection_of: UBERON:0004175 ! internal reproductive organ
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system

[Term]
id: UBERON:0004057
name: skeletal muscle fiber triad
namespace: uberon
def: "the skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads" [MP:0009411]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue

[Term]
id: UBERON:0004060
name: neural tube ventricular layer
namespace: uberon
def: "the layer of undifferentiated, proliferating cells that line the neural tube lumen" [MP:0009689]
synonym: "neural tube ependymal zone" EXACT [MP:0009689]
synonym: "neural tube ventricular zone" RELATED [MP:0009689]
xref: EMAPA:16783
xref: EMAPA:17152
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
relationship: adjacent_to UBERON:0003842 ! neural tube lumen
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube

[Term]
id: UBERON:0004061
name: neural tube mantle layer
namespace: uberon
def: "the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690]
synonym: "neural tube intermediate zone" EXACT [MP:0009690]
xref: EMAPA:17148
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
relationship: adjacent_to UBERON:0004060 ! neural tube ventricular layer
relationship: adjacent_to UBERON:0004062 ! neural tube marginal layer
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube

[Term]
id: UBERON:0004062
name: neural tube marginal layer
namespace: uberon
def: "the outermost layer of the neural tube that contains nerve fibers and will form the white matter" [MP:0009691]
synonym: "neural tube marginal zone" EXACT [MP:0009691]
xref: EMAPA:17151
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube

[Term]
id: UBERON:0004064
name: basal plate
namespace: uberon
def: "the region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. the region of the neural tube ventral to the sulcus limitans. It extends from the rostral mesencephalon to the end of the spinal cord and contains primarily motor neurons, whereas neurons found in the alar plate are primarily associated with sensory functions. The cell types of the basal plate include lower motor neurons and four types of interneuron. Initially the left and right sides of the basal plate are continuous, but during neurulation they become separated by the floor plate, a derivative of the notochord[WP]." [MP:0009693, Wikipedia:Basal_plate_(neural_tube)]
synonym: "basal plate of neural tube" EXACT [Wikipedia:Basal_plate_(neural_tube)]
synonym: "spinal cord basal plate" EXACT [MP:0009693]
xref: AAO:0010561
xref: EFO:0001904
xref: ncithesaurus:Basal_Plate
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0004061 ! neural tube mantle layer
relationship: ventral_to UBERON:0005478 ! sulcus limitans of neural tube

[Term]
id: UBERON:0004066
name: frontonasal prominence
namespace: uberon
alt_id: UBERON:0006237
def: "During embryonic development, two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence (or process)[WP]. By the upgrowth of the surrounding parts these areas are converted into pits, the olfactory pits, which indent the frontonasal prominence and divide it into a medial and two lateral nasal processes[WP]. two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence. an unpaired facial process in the embryo formed from the tissues surrounding the forebrain vesicle that develops into the forehead and bridge of the nose/snout[MP]." [MP:0009901, Wikipedia:Frontonasal_prominence]
comment: TODO - improve def
xref: EHDAA2:0000581
xref: EHDAA:4778
xref: EMAPA:16681
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray44.png/200px-Gray44.png
xref: ncithesaurus:Frontonasal_Prominence
xref: SCTID:361486000
xref: VHOG:0001319
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009292 ! embryonic nasal process

[Term]
id: UBERON:0004068
name: medial nasal prominence
namespace: uberon
def: "the central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it" [MP:0009903, Wikipedia:Medial_nasal_prominence]
comment: Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity.
synonym: "medial nasal process" EXACT [EHDAA2:0001076]
synonym: "medial nasal swelling" RELATED [UBERON:cjm]
synonym: "medial-nasal process" EXACT [EMAPA:16808]
xref: EHDAA2:0001076
xref: EHDAA:4792
xref: EMAPA:16808
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray45.png/200px-Gray45.png
xref: SCTID:308877001
xref: VHOG:0000804
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009292 ! embryonic nasal process
relationship: develops_from UBERON:0004066 {source="Wikipedia"} ! frontonasal prominence
relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence

[Term]
id: UBERON:0004088
name: ocular region
namespace: uberon
def: "." [HP:0000284]
comment: TODO: consider the following: eyeball (eye proper) part_of eye (= eyeball+eyelid etc) part_of ocular region (= eye + eyebrow); note the FMA class is more narrow though, and is more like eye + muscles + vasculature // in HP covers eyelid, eyebrow
synonym: "content of orbital part of eye" EXACT [FMA:260119]
synonym: "eye region" EXACT [OBOL:automatic]
xref: FMA:260119
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:0004089
name: midface
namespace: uberon
def: "the middle of the face including the nose and its associated bony structures[MW]." [HP:0000309, http://www.merriam-webster.com/medical/midface]
comment: editors note: this class is currently a union of the snout (e.g. in mouse), the midface and the lower face. Note that in MA, snout includes the whole jaw and should thus be more alike the lower face than the midface, so its placement here is not strictly accurate. In future we might introduce specific classes for each of these, and include the full parthood relationships. if this is done, then care should be taken to preserve inferences such as an abnormality of the lower face being an abnormality of the midface.
synonym: "lower face" RELATED []
synonym: "midface/lower face" RELATED []
synonym: "snout" RELATED SENSU [MA:0001910]
xref: MA:0001910
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:0004096
name: odontoid process
namespace: uberon
alt_id: UBERON:0005210
def: "The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]." [GAID:238, HP:0003310, Wikipedia:Wikipedia:Dens_(anatomy)]
comment: TODO check AAO:0000721 odontoid_process -- Anterior process located between the atlantal cotyles that projects into the foramen magnum of the skull and bears facets that articulate with the lateral walls of the foramen
synonym: "axis dens" EXACT [FMA:24043]
synonym: "axis odontoid process" EXACT [MA:0002872]
synonym: "cervical vertebra 2 odontoid process" EXACT [MA:0002872]
synonym: "dens" EXACT [EMAPA:26535]
synonym: "dens of axis" EXACT [FMA:24043]
synonym: "odontoid" RELATED [Wikipedia:Wikipedia:Dens_(anatomy)]
synonym: "odontoid process of axis" EXACT [FMA:24043]
xref: AAO:0000721
xref: EMAPA:26535
xref: FMA:24043
xref: GAID:238
xref: MA:0002872
xref: MESH:A.02.835.232.834.151.383.668
xref: ncithesaurus:Odontoid_Process
xref: OpenCyc:Mx4rwIYGoJwpEbGdrcN5Y29ycA
xref: SCTID:181899003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001093 ! second cervical vertebra

[Term]
id: UBERON:0004098
name: tibial plateaux
namespace: uberon
def: "." [HP:0003832]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000979 ! tibia

[Term]
id: UBERON:0004099
name: joint spaces of the elbow
namespace: uberon
def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint." [HP:0003943]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: part_of UBERON:0001490 ! elbow joint
relationship: part_of UBERON:0001490 ! elbow joint

[Term]
id: UBERON:0004103
name: alveolar ridge
namespace: uberon
def: "one of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]." [HP:0006477, Wikipedia:Alveolar_ridge]
comment: note that in BTO, this is part of an embryo
synonym: "alveolar body" EXACT [MP:0004189]
synonym: "alveolar bone" EXACT [MP:0004189]
synonym: "alveolar margin" EXACT []
synonym: "alveolar process" EXACT [GAID:215]
xref: BTO:0001383
xref: GAID:215
xref: MESH:A.02.835.232.781.324.502.125
xref: ncithesaurus:Alveolar_Ridge
xref: SCTID:245790000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001708 ! jaw

[Term]
id: UBERON:0004106
name: crus of ear
namespace: uberon
def: "horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895]
synonym: "crus helicis" EXACT [FMA:61024, FMA:TA]
synonym: "crus of helical part of auricular cartilage" EXACT []
synonym: "crus of helix" EXACT [FMA:61024]
xref: FMA:61024
xref: ncithesaurus:Crus_Helicis
xref: SCTID:362547004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001867 ! cartilage of external ear
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0004108
name: clivus of occipital bone
namespace: uberon
def: "Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons." [HP:0010558, Wikipedia:Clivus_%28anatomy%29]
comment: The clivus is an important landmark for checking for anatomical atlanto-occipital alignment; the clivus, when viewed on a lateral C-spine X-ray, forms a line which, if extended, is known as Wackenheim's clivus line. Wackenheim's clivus line should pass through the dens of the axis or be tangential to it. Editor note: check relationships.
synonym: "clivus" EXACT [HP:0010558]
synonym: "occipital bone clivus" EXACT [FMA:75747]
synonym: "Wackenheim's clivus line" RELATED [Wikipedia:Clivus_%28anatomy%29]
xref: FMA:75747
xref: ncithesaurus:Clivus
xref: SCTID:361736007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: adjacent_to UBERON:0001677 {source="Wikipedia"} ! sphenoid bone
relationship: part_of UBERON:0001676 {source="FMA"} ! occipital bone
relationship: part_of UBERON:0008788 {source="HP:0010558"} ! posterior cranial fossa

[Term]
id: UBERON:0004109
name: cortex of humerus
namespace: uberon
def: "." [HP:0010629]
synonym: "compact bone of humerus" EXACT [FMA:31542]
synonym: "cortex of the humerus" EXACT []
synonym: "humerus compact bone" EXACT []
synonym: "humerus cortical bone" EXACT []
xref: FMA:31542
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001439 ! compact bone
is_a: UBERON:0004269 ! upper arm connective tissue
is_a: UBERON:0005808 ! bone tissue of long bone
intersection_of: UBERON:0001439 ! compact bone
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus

[Term]
id: UBERON:0004111
name: anatomical conduit
namespace: uberon
def: "any opening in the body." [Wikipedia:Foramen]
comment: note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature
synonym: "foramen" NARROW [EHDAA2:0003080]
synonym: "foramina" NARROW PLURAL [UBERON:cjm]
xref: AEO:0000080
xref: EHDAA2:0003080
xref: FMA:242873
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster

[Term]
id: UBERON:0004112
name: muscle of middle ear
namespace: uberon
def: "A muscle of head that is part of a tympanic cavity [Obol]." [OBOL:automatic]
comment: check tympanic cavity vs middle ear. the same for muscles?
synonym: "muscle of tympanic cavity" EXACT []
synonym: "tympanic cavity muscle" EXACT []
xref: MA:0000256
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head
intersection_of: UBERON:0002376 ! muscle of head
intersection_of: part_of UBERON:0004114 ! tympanic cavity
relationship: part_of UBERON:0004114 ! tympanic cavity

[Term]
id: UBERON:0004113
name: muscle of auditory ossicle
namespace: uberon
synonym: "auditory ossicles muscle" EXACT [FMA:49026]
synonym: "muscle of auditory ossicles" EXACT [FMA:49026]
synonym: "ossicular muscle" EXACT [FMA:49026]
xref: FMA:49026
xref: SCTID:244778009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head
intersection_of: UBERON:0002376 ! muscle of head
intersection_of: attached_to UBERON:0001686 ! auditory ossicle
relationship: attached_to UBERON:0001686 ! auditory ossicle

[Term]
id: UBERON:0004114
name: tympanic cavity
namespace: uberon
def: "small cavity surrounding the bones of the middle ear." [Wikipedia:Tympanic_cavity]
synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "cavitas tympani" EXACT [Wikipedia:Tympanic_cavity]
synonym: "cavity of middle ear" EXACT [OBOL:automatic]
synonym: "middle ear cavity" EXACT [OBOL:automatic]
synonym: "tympanum" RELATED [BTO:0002098]
xref: BTO:0002098
xref: EHDAA2:0004119
xref: EV:0100358
xref: FMA:56461
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: SCTID:362551002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity
is_a: UBERON:0005082 ! tube lumen
is_a: UBERON:0010064 {source="EHDAA2"} ! open anatomical space
relationship: developmentally_replaces UBERON:0005625 {source="EHDAA2"} ! tubotympanic recess
relationship: part_of UBERON:0001756 ! middle ear
relationship: surrounded_by UBERON:0010063 ! tympanic cavity epithelium
relationship: surrounds UBERON:0001686 ! auditory ossicle

[Term]
id: UBERON:0004117
name: pharyngeal pouch
namespace: uberon
def: "embryonic structure that forms on the endodermal side between the pharyngeal arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. The pouches line up with the clefts, and these thin segments become gills in fish[WP]. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]." [Wikipedia:Pharyngeal_pouch_(embryology)]
comment: Editor notes: consider adding location (precursor) - i.e. internal (endodermal)  // The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389]
subset: vertebrate_core
synonym: "branchial pouch" EXACT [Wikipedia:Branchial_pouch]
synonym: "visceral pouch" EXACT SENSU []
xref: AAO:0011113
xref: EFO:0003627
xref: EHDAA:1086
xref: EHDAA:1669
xref: EHDAA:579
xref: EHDAA:617
xref: ncithesaurus:Pharyngeal_Pouch
xref: SCTID:34674002
xref: TAO:0001106
xref: VHOG:0001203
xref: XAO:0000282
xref: ZFA:0001106
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0005911 ! endo-epithelium
relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm
relationship: overlaps UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0008814 ! pharyngeal system

[Term]
id: UBERON:0004119
name: endoderm-derived structure
namespace: uberon
def: "An anatomical structure that develops (entirely or partially) from the endoderm." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0010317 ! germ layer / neural crest derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000925 ! endoderm

[Term]
id: UBERON:0004120
name: mesoderm-derived structure
namespace: uberon
def: "An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0010317 ! germ layer / neural crest derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0004121
name: ectoderm-derived structure
namespace: uberon
def: "An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0010317 ! germ layer / neural crest derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0000924 ! ectoderm

[Term]
id: UBERON:0004122
name: genitourinary system
namespace: uberon
synonym: "genitourinary tract" RELATED []
synonym: "GU tract" RELATED []
synonym: "urogenital system" EXACT []
synonym: "urogenital tract" RELATED [BTO:0003091]
synonym: "Urogenitalsystem" RELATED [BTO:0003091]
xref: AAO:0000624
xref: BILA:0000122
xref: BTO:0003091
xref: EFO:0003864
xref: EHDAA:1013
xref: EMAPA:16367
xref: EV:0100094
xref: GAID:362
xref: galen:GenitoUrinarySystem
xref: MESH:A.05
xref: ncithesaurus:Genitourinary_System
xref: OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g
xref: SCTID:278861008
xref: VHOG:0000286
xref: XAO:0000140
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000467 ! anatomical system
intersection_of: has_part UBERON:0000990 ! reproductive system
intersection_of: has_part UBERON:0001008 ! excretory system
relationship: develops_from UBERON:0003064 {source="AAO"} ! intermediate mesoderm
relationship: has_part UBERON:0000990 ! reproductive system
relationship: has_part UBERON:0001008 ! excretory system

[Term]
id: UBERON:0004123
name: myocardial layer
namespace: uberon
synonym: "layer of myocardium" EXACT []
synonym: "myocardium layer" EXACT []
xref: MA:0000080
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
intersection_of: UBERON:0004923 ! organ component layer
intersection_of: part_of UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002349 ! myocardium

[Term]
id: UBERON:0004124
name: myocardium trabecular layer
namespace: uberon
def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]." [ZFA:0005059]
subset: vertebrate_core
synonym: "myocardial trabecular layer" EXACT []
synonym: "trabecular layer" EXACT [ZFA:0005059]
xref: EFO:0003706
xref: MA:0002866
xref: TAO:0005059
xref: ZFA:0005059
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004123 ! myocardial layer

[Term]
id: UBERON:0004125
name: myocardial compact layer
namespace: uberon
def: " outer dense layer of the myocardium uniting the epicardium and myocardium[MP]." [MP:0004056]
synonym: "myocardium compact layer" EXACT [MA:0002865]
xref: MA:0002865
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004123 ! myocardial layer

[Term]
id: UBERON:0004126
name: trabecular layer of ventricle
namespace: uberon
comment: todo - check FMA
subset: vertebrate_core
synonym: "myocardium of region of ventricle" EXACT [FMA:83511]
synonym: "trabecular cardiac ventricle muscle" EXACT [GO:0003222]
synonym: "ventricular trabecular myocardium" EXACT [GO:0003222]
xref: FMA:83511
xref: TAO:0005060
xref: ZFA:0005060
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004124 ! myocardium trabecular layer
intersection_of: UBERON:0004124 ! myocardium trabecular layer
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle

[Term]
id: UBERON:0004127
name: compact layer of ventricle
namespace: uberon
def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFA:0005062]
synonym: "compact cardiac ventricle muscle" EXACT []
synonym: "ventricle myocardium compact zone" EXACT [MP:0010556]
synonym: "ventricular compact myocardium" EXACT []
synonym: "ventricular myocardial compact layer" EXACT [MP:0010556]
synonym: "ventricular myocardial compact zone" EXACT [MP:0010556]
xref: TAO:0005062
xref: ZFA:0005062
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004125 ! myocardial compact layer
intersection_of: UBERON:0004125 ! myocardial compact layer
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0001083 {source="ZFA"} ! myocardium of ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle

[Term]
id: UBERON:0004128
name: optic vesicle
namespace: uberon
def: "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles]
comment: Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode PMID:16496288
subset: vertebrate_core
synonym: "evagination" RELATED []
xref: AAO:0011039
xref: EHDAA2:0001320
xref: EMAPA:16540
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Gray863.png/200px-Gray863.png
xref: ncithesaurus:Optic_Vesicle
xref: SCTID:362864008
xref: TAO:0000050
xref: VHOG:0000165
xref: XAO:0000228
xref: ZFA:0000050
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003071 {source="ZFA"} ! eye primordium
relationship: induced_by UBERON:0004880 ! chordamesoderm
relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye

[Term]
id: UBERON:0004129
name: growth plate cartilage
namespace: uberon
def: "cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow." [GO:0003417]
synonym: "growth plate" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
relationship: surrounds UBERON:0002513 ! endochondral bone

[Term]
id: UBERON:0004138
name: somitomeric trunk muscle
namespace: uberon
def: "The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]." [GO:0002075]
comment: TODO - find N+S conditions. SMT & develops_from somite is not specific enough (all SMT develops_from somite)
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: develops_from UBERON:0002329 ! somite

[Term]
id: UBERON:0004139
name: cardiogenic plate
namespace: uberon
def: "The first recognizable structure derived from the heart field" [GO:0003142]
comment: TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO
synonym: "cardiogenic crescent" RELATED [GO:0003142]
synonym: "heart rudiment" RELATED []
synonym: "myocardial plate" EXACT [EHDAA2:0000215]
xref: EHDAA2:0000215
xref: EMAPA:16106
xref: VHOG:0000975
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003084 ! heart primordium
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0004140
name: heart field
namespace: uberon
def: "a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128]
comment: note that this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138]
synonym: "primary heart field" EXACT [PMID:17276708, XAO:0004185]
xref: XAO:0004185
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003081 {source="GO:0003128"} ! lateral plate mesoderm

[Term]
id: UBERON:0004141
name: heart tube
namespace: uberon
def: "Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143, ZFA:0000360]
subset: vertebrate_core
synonym: "early primitive heart tube" EXACT [EMAPA:16208]
synonym: "embryonic heart tube" RELATED []
xref: EFO:0003526
xref: EHDAA:424
xref: EMAPA:16208
xref: TAO:0000360
xref: XAO:0000337
xref: ZFA:0000360
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 {source="XAO"} ! embryonic structure
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0005498 {source="ZFA"} ! primitive heart tube

[Term]
id: UBERON:0004145
name: outflow tract
namespace: uberon
def: "The outflow tract is the portion of the heart through which blood flows into the arteries" [GO:0003151]
synonym: "cardiac outflow tract" EXACT []
xref: EHDAA2:0001351
xref: EHDAA:464
xref: EHDAA:798
xref: EMAPA:16229
xref: EMAPA:16346
xref: MA:0000100
xref: VHOG:0000670
xref: XAO:0004139
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0004146
name: His-Purkinje system
namespace: uberon
def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles" [GO:0003164]
synonym: "distal conduction system" EXACT [ZFA:0005071]
synonym: "His-Purkinji network" EXACT [ZFA:0005071]
synonym: "HPS" EXACT [ZFA:0005071]
xref: TAO:0005071
xref: ZFA:0005071
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002350 ! conducting system of heart

[Term]
id: UBERON:0004147
name: cardiac Purkinje fiber
namespace: uberon
def: "The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle" [GO:0003165]
synonym: "heart Purkinje fiber" RELATED [BTO:0001735]
xref: BTO:0001735
xref: MESH:A.07.541.409.683
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004146 ! His-Purkinje system

[Term]
id: UBERON:0004151
name: cardiac chamber
namespace: uberon
def: "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205]
comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus
synonym: "chamber of heart" EXACT []
synonym: "heart chamber" EXACT []
xref: FMA:7095
xref: OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw
xref: SCTID:276456008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0004161
name: septum transversum
namespace: uberon
def: "A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[OG]. The septum transversum is a portion of the trunk mesenchyme[GO]." [GO:0003343, VHOG:0000019, Wikipedia:Septum_transversum]
synonym: "transverse septum" EXACT [UBERON:cjm]
xref: EHDAA2:0001829
xref: EHDAA:736
xref: EMAPA:16318
xref: ncithesaurus:Septum_Transversum
xref: SCTID:308819008
xref: VHOG:0000019
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0005256 ! trunk mesenchyme
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0004162
name: pulmonary myocardium
namespace: uberon
def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein" [GO:0003350]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002036 ! striated muscle tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002016 ! pulmonary vein
relationship: part_of UBERON:0002349 ! myocardium

[Term]
id: UBERON:0004164
name: branchiomeric skeletal muscle
namespace: uberon
def: "The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to the gill musculature of fish[GO]." [GO:0014707]
comment: TODO - gill musculature
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002539 {source="PMID:21610022"} ! pharyngeal arch
relationship: develops_from UBERON:0006904 {source="GO"} ! head mesenchyme from mesoderm

[Term]
id: UBERON:0004174
name: leg joint
namespace: uberon
def: "Joint in the leg. For example the knee, which separates the leg tibia and femur" [GO:0035111]
synonym: "joint of leg" EXACT [OBOL:automatic]
synonym: "joint of lower limb" RELATED [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003840 ! hindlimb joint
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0004175
name: internal reproductive organ
namespace: uberon
def: "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260]
subset: organ_slim
synonym: "internal genitalia" EXACT []
synonym: "internal reproductive organ" EXACT []
synonym: "internal sex organ" EXACT []
xref: FMA:45652
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003133 ! reproductive organ

[Term]
id: UBERON:0004176
name: external reproductive organ
namespace: uberon
def: "The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261]
subset: organ_slim
synonym: "external genitalia" EXACT []
synonym: "external reproductive organ" EXACT []
synonym: "external sex organ" EXACT []
xref: FMA:45643
xref: SCTID:362207005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003133 ! reproductive organ

[Term]
id: UBERON:0004177
name: hemopoietic organ
namespace: uberon
def: "Organ that is part of the hematopoietic system." [GOC:Obol]
comment: note that the FMA class 'lymphoid organ' is a general anatomical term
subset: organ_slim
synonym: "haematological system organ" EXACT [OBOL:automatic]
synonym: "haemopoietic system organ" EXACT [OBOL:automatic]
synonym: "hematopoeitic or lymphoid organ" NARROW []
synonym: "hematopoietic system organ" EXACT [OBOL:automatic]
synonym: "lymphoid organ" NARROW [BTO:0004605, FMA:7143]
synonym: "organ of haematological system" EXACT [OBOL:automatic]
synonym: "organ of haemopoietic system" EXACT [OBOL:automatic]
synonym: "organ of hematopoietic system" EXACT [OBOL:automatic]
synonym: "organ of organa haemopoietica" EXACT [OBOL:automatic]
synonym: "organa haemopoietica organ" EXACT [OBOL:automatic]
xref: BTO:0004605
xref: FMA:7143
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002390 ! hematopoietic system

[Term]
id: UBERON:0004178
name: aorta smooth muscle tissue
namespace: uberon
def: "A portion of smooth muscle tissue that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "adult aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "adult aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "adult aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "adult aorta smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "aortic smooth muscle" EXACT [BTO:0001685]
synonym: "dorsal aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "non-striated muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "smooth muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of adult aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of dorsal aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree involuntary muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree non-striated muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree smooth muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001685
xref: EFO:0002775
xref: MA:0000702
xref: ncithesaurus:Aorta_Smooth_Muscle_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002111 ! artery smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta

[Term]
id: UBERON:0004185
name: endodermal gut
namespace: uberon
def: "A portions of the gut that is derived from endoderm." [GO:0061031]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0004219
name: urethra smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of urethra" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urethra" EXACT [OBOL:automatic]
synonym: "smooth muscle of urethra" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra involuntary muscle" EXACT [OBOL:automatic]
synonym: "urethra non-striated muscle" EXACT [OBOL:automatic]
synonym: "urethra smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "urethral smooth muscle" RELATED [MA:0001691]
xref: MA:0001691
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra

[Term]
id: UBERON:0004220
name: large intestine smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a large intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of large intestine" EXACT [OBOL:automatic]
synonym: "large intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "large intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "large intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of large intestine" EXACT [OBOL:automatic]
xref: MA:0001547
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004221 ! intestine smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine

[Term]
id: UBERON:0004221
name: intestine smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a intestine [Obol]." [OBOL:automatic]
synonym: "bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of intestine" EXACT [OBOL:automatic]
xref: BTO:0000643
xref: MA:0001539
xref: ncithesaurus:Intestinal_Smooth_Muscle_Tissue
xref: WBbt:0005796
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004226 ! gastrointestinal system smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine

[Term]
id: UBERON:0004222
name: stomach smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a stomach [Obol]." [OBOL:automatic]
synonym: "gastric muscle" RELATED [BTO:0001818]
synonym: "gastric smooth muscle" RELATED [MA:0001627]
synonym: "involuntary muscle of stomach" EXACT [OBOL:automatic]
synonym: "involuntary muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of stomach" EXACT [OBOL:automatic]
synonym: "non-striated muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach involuntary muscle" EXACT [OBOL:automatic]
synonym: "stomach muscle" RELATED [BTO:0001818]
synonym: "stomach non-striated muscle" EXACT [OBOL:automatic]
synonym: "stomach smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "ventriculus involuntary muscle" EXACT [OBOL:automatic]
synonym: "ventriculus non-striated muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001818
xref: MA:0001627
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004226 ! gastrointestinal system smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach

[Term]
id: UBERON:0004223
name: vagina smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a vagina [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of vagina" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vagina" EXACT [OBOL:automatic]
synonym: "smooth muscle of vagina" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vagina" EXACT [OBOL:automatic]
synonym: "vagina involuntary muscle" EXACT [OBOL:automatic]
synonym: "vagina non-striated muscle" EXACT [OBOL:automatic]
synonym: "vagina smooth muscle" RELATED [BTO:0004999]
synonym: "vagina smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0004999
xref: MA:0001733
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006652 ! muscular layer of vagina
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina

[Term]
id: UBERON:0004224
name: vas deferens smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a vas deferens [Obol]." [OBOL:automatic]
comment: todo - check MA and FMA classes mean the same thing
synonym: "muscle layer of deferent duct" EXACT [FMA:19239]
synonym: "muscle layer of ductus deferens" EXACT [FMA:19239]
synonym: "muscle layer of vas deferens" EXACT [FMA:19239]
synonym: "muscular coat of ductus deferens" EXACT [FMA:19239]
synonym: "muscular layer of ductus deferens" EXACT [FMA:19239]
synonym: "muscularis of vas deferens" EXACT [FMA:19239]
synonym: "tunica muscularis (Ductus deferens)" EXACT [FMA:19239]
synonym: "tunica muscularis ductus deferentis" EXACT [FMA:19239, FMA:TA]
xref: EMAPA:29270
xref: FMA:19239
xref: MA:0001750
xref: SCTID:299705008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0001000 ! vas deferens
relationship: part_of UBERON:0001000 ! vas deferens

[Term]
id: UBERON:0004225
name: respiratory system smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius involuntary muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius non-striated muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius smooth muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "involuntary muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "non-striated muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system involuntary muscle" EXACT [OBOL:automatic]
synonym: "respiratory system non-striated muscle" EXACT [OBOL:automatic]
synonym: "respiratory system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "smooth muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001830
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0004226
name: gastrointestinal system smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system involuntary muscle" EXACT [OBOL:automatic]
synonym: "digestive system non-striated muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gastrointestinal system involuntary muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system non-striated muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of digestive system" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of digestive system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001523
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004227
name: kidney pelvis smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a renal pelvis [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "involuntary muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "kidney pelvis involuntary muscle" EXACT [OBOL:automatic]
synonym: "kidney pelvis non-striated muscle" EXACT [OBOL:automatic]
synonym: "kidney pelvis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "non-striated muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "pelvis of ureter involuntary muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter non-striated muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter smooth muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "renal pelvis involuntary muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis non-striated muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis smooth muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "smooth muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of kidney pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of renal pelvis" EXACT [OBOL:automatic]
xref: FMA:262022
xref: MA:0002631
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005321 ! mesonephric smooth muscle tissue
is_a: UBERON:0009919 ! ureter smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001224 ! renal pelvis

[Term]
id: UBERON:0004228
name: urinary bladder smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001849
xref: MA:0001697
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder

[Term]
id: UBERON:0004229
name: urinary bladder trigone smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic]
synonym: "deep trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "deep trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "deep trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "deep trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of deep trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trigone of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vesical trigone" EXACT [OBOL:automatic]
synonym: "trigone of bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vesical trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001700
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004228 ! urinary bladder smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder
relationship: part_of UBERON:0001257 ! trigone of urinary bladder

[Term]
id: UBERON:0004230
name: urinary bladder neck smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a neck of urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "bladder neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "bladder neck smooth muscle" EXACT [OBOL:automatic]
synonym: "bladder neck smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "involuntary muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "neck of bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "non-striated muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of neck of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vesical neck" EXACT [OBOL:automatic]
synonym: "urinary bladder neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder neck smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vesical neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "vesical neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "vesical neck smooth muscle" EXACT [OBOL:automatic]
synonym: "vesical neck smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001699
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004228 ! urinary bladder smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001258 ! neck of urinary bladder
relationship: part_of UBERON:0001258 ! neck of urinary bladder

[Term]
id: UBERON:0004231
name: anal region smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal region non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal region smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal triangle non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal region" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal region" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001532
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004232
name: lymphatic vessel smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a lymphatic vessel [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel smooth muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lymphatic vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "lymphatic vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "lymphatic vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lymph vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lymphatic vessel" EXACT [OBOL:automatic]
xref: MA:0000751
xref: ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001473 ! lymphatic vessel

[Term]
id: UBERON:0004233
name: lower respiratory tract smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract involuntary muscle" EXACT [OBOL:automatic]
synonym: "lower respiratory tract non-striated muscle" EXACT [OBOL:automatic]
synonym: "lower respiratory tract smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0002410
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004225 ! respiratory system smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0001558 ! lower respiratory tract

[Term]
id: UBERON:0004234
name: iris smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a iris [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of iris" EXACT [OBOL:automatic]
synonym: "iris involuntary muscle" EXACT [OBOL:automatic]
synonym: "iris non-striated muscle" EXACT [OBOL:automatic]
synonym: "iris smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of iris" EXACT [OBOL:automatic]
xref: BTO:0000655
xref: MA:0001270
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001606 ! muscle of iris
is_a: UBERON:0003386 ! smooth muscle of eye
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris

[Term]
id: UBERON:0004235
name: mammary gland smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a lactiferous gland [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "involuntary muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland smooth muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast involuntary muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast non-striated muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast smooth muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland smooth muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "mammary gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "mammary gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "mammary gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "non-striated muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "smooth muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic]
xref: MA:0000795
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland

[Term]
id: UBERON:0004236
name: arteriole smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of an arteriole [Obol]." [OBOL:automatic]
xref: MA:0000706
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002111 ! artery smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001980 ! arteriole
relationship: part_of UBERON:0001980 ! arteriole

[Term]
id: UBERON:0004237
name: blood vessel smooth muscle
namespace: uberon
alt_id: UBERON:0010508
def: "smooth muscle found within, and composing the majority of the wall of blood vessels." [Wikipedia:Vascular_smooth_muscle]
comment: Function notes: Vascular smooth muscle contracts or relaxes to both change the volume of blood vessels and the local blood pressure, a mechanism that is responsible for the redistribution of the blood within the body to areas where it is needed (i.e. areas with temporarily enhanced oxygen consumption). Thus the main function of vascular smooth muscle tonus is to regulate the caliber of the blood vessels in the body. Excessive vasoconstriction leads to hypertension, while excessive vasodilation as in shock leads to hypotension.
synonym: "blood vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "blood vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "blood vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of blood vessel" EXACT [OBOL:automatic]
synonym: "vascular smooth muscle" EXACT [ZFA:0005321]
synonym: "vascular smooth muscle tissue" EXACT []
xref: BTO:0001431
xref: MA:0000710
xref: MESH:A.02.633.570.491
xref: ncithesaurus:Vascular_Smooth_Muscle_Tissue
xref: TAO:0005321
xref: ZFA:0005321
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001981 ! blood vessel

[Term]
id: UBERON:0004238
name: spleen smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a spleen [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of spleen" EXACT [OBOL:automatic]
synonym: "non-striated muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of spleen" EXACT [OBOL:automatic]
synonym: "spleen involuntary muscle" EXACT [OBOL:automatic]
synonym: "spleen non-striated muscle" EXACT [OBOL:automatic]
synonym: "spleen smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0000757
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen

[Term]
id: UBERON:0004239
name: small intestine smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a small intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of small bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of small intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "small bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "small intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "small intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "small intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of small intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small intestine" EXACT [OBOL:automatic]
xref: MA:0001559
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004221 ! intestine smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0002108 ! small intestine

[Term]
id: UBERON:0004240
name: gall bladder smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "biliary smooth muscle" RELATED [MA:0001635]
synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gall bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gallbladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gallbladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gallbladder" EXACT [OBOL:automatic]
xref: MA:0001635
xref: ncithesaurus:Gallbladder_Smooth_Muscle_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder

[Term]
id: UBERON:0004241
name: main bronchus smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "main bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "main bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus smooth muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus smooth muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "smooth muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of principal bronchus" EXACT [OBOL:automatic]
xref: MA:0001848
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004242 ! bronchus smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus

[Term]
id: UBERON:0004242
name: bronchus smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchi non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchi smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchi smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchi" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchi" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchi" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchi" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchus" EXACT [OBOL:automatic]
xref: MA:0001840
xref: ncithesaurus:Bronchus_Smooth_Muscle_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004233 ! lower respiratory tract smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus

[Term]
id: UBERON:0004243
name: prostate gland smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of prostate" EXACT [OBOL:automatic]
synonym: "involuntary muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "muscular tissue of prostate" EXACT [FMA:74245]
synonym: "non-striated muscle of prostate" EXACT [OBOL:automatic]
synonym: "non-striated muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "prostate gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "prostate gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "prostate gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "prostate involuntary muscle" EXACT [OBOL:automatic]
synonym: "prostate non-striated muscle" EXACT [OBOL:automatic]
synonym: "prostate smooth muscle" EXACT [OBOL:automatic]
synonym: "prostate smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of prostate" EXACT [OBOL:automatic]
synonym: "smooth muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of prostate" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of prostate gland" EXACT [OBOL:automatic]
synonym: "substantia muscularis prostatae" EXACT [FMA:74245, FMA:TA]
xref: BTO:0003159
xref: FMA:74245
xref: MA:0001741
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0008715 ! muscle tissue of prostate
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland

[Term]
id: UBERON:0004245
name: oviduct smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a fallopian tube [Obol]." [OBOL:automatic]
synonym: "fallopian tube involuntary muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube non-striated muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube smooth muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "non-striated muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "smooth muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of fallopian tube" EXACT [OBOL:automatic]
xref: MA:0001721
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003889 ! fallopian tube
relationship: part_of UBERON:0003889 ! fallopian tube

[Term]
id: UBERON:0004246
name: outflow tract smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "non-striated muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "outflow tract involuntary muscle" EXACT [OBOL:automatic]
synonym: "outflow tract non-striated muscle" EXACT [OBOL:automatic]
synonym: "outflow tract smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of outflow tract" EXACT [OBOL:automatic]
xref: MA:0000492
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract

[Term]
id: UBERON:0004247
name: back bone
namespace: uberon
def: "A bone that is part of a back [Obol]." [OBOL:automatic]
synonym: "back bone organ" EXACT [OBOL:automatic]
synonym: "bone of back" EXACT [OBOL:automatic]
synonym: "bone organ of back" EXACT [OBOL:automatic]
xref: MA:0000494
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003463 ! trunk bone
is_a: UBERON:0005174 ! back organ
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0004248
name: foot digit bone
namespace: uberon
def: "A bone that is part of a toe [Obol]." [OBOL:automatic]
synonym: "bone of digit of foot" EXACT [OBOL:automatic]
synonym: "bone of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone of digitus pedis" EXACT [OBOL:automatic]
synonym: "bone of foot digit" EXACT [OBOL:automatic]
synonym: "bone of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "bone of toe" EXACT [OBOL:automatic]
synonym: "bone organ of digit of foot" EXACT [OBOL:automatic]
synonym: "bone organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone organ of digitus pedis" EXACT [OBOL:automatic]
synonym: "bone organ of foot digit" EXACT [OBOL:automatic]
synonym: "bone organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "bone organ of toe" EXACT [OBOL:automatic]
synonym: "digit of foot bone" EXACT [OBOL:automatic]
synonym: "digit of foot bone organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb bone" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb bone organ" EXACT [OBOL:automatic]
synonym: "digitus pedis bone" EXACT [OBOL:automatic]
synonym: "digitus pedis bone organ" EXACT [OBOL:automatic]
synonym: "foot digit bone organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit bone" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit bone organ" EXACT [OBOL:automatic]
synonym: "toe bone" EXACT [OBOL:automatic]
synonym: "toe bone organ" EXACT [OBOL:automatic]
xref: MA:0000646
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005899 ! foot bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0004249
name: hand digit bone
namespace: uberon
def: "A bone that is part of a finger [Obol]." [OBOL:automatic]
synonym: "bone of digit of hand" EXACT [OBOL:automatic]
synonym: "bone of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of digitus manus" EXACT [OBOL:automatic]
synonym: "bone of finger" EXACT [OBOL:automatic]
synonym: "bone of hand digit" EXACT [OBOL:automatic]
synonym: "bone of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "bone organ of digit of hand" EXACT [OBOL:automatic]
synonym: "bone organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of digitus manus" EXACT [OBOL:automatic]
synonym: "bone organ of finger" EXACT [OBOL:automatic]
synonym: "bone organ of hand digit" EXACT [OBOL:automatic]
synonym: "bone organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "digit of hand bone" EXACT [OBOL:automatic]
synonym: "digit of hand bone organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "digitus manus bone" EXACT [OBOL:automatic]
synonym: "digitus manus bone organ" EXACT [OBOL:automatic]
synonym: "finger bone" EXACT [OBOL:automatic]
synonym: "finger bone organ" EXACT [OBOL:automatic]
synonym: "hand digit bone organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit bone" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit bone organ" EXACT [OBOL:automatic]
xref: MA:0000622
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005897 ! hand bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0004250
name: upper arm bone
namespace: uberon
def: "A bone that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod bone" EXACT [OBOL:automatic]
synonym: "arm stylopod bone organ" EXACT [OBOL:automatic]
synonym: "bone of arm stylopod" EXACT [OBOL:automatic]
synonym: "bone of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "bone of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "bone of stylopod of arm" EXACT [OBOL:automatic]
synonym: "bone of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of upper arm" EXACT [OBOL:automatic]
synonym: "bone organ of arm stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of arm" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of upper arm" EXACT [OBOL:automatic]
synonym: "brachial region stylopod bone" EXACT [OBOL:automatic]
synonym: "brachial region stylopod bone organ" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of arm bone" EXACT [OBOL:automatic]
synonym: "stylopod of arm bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region bone" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "upper arm bone organ" EXACT [OBOL:automatic]
xref: MA:0000604
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003460 ! arm bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod

[Term]
id: UBERON:0004251
name: lower leg bone
namespace: uberon
def: "A bone that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "bone of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "bone of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "bone of lower leg" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of lower leg" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod bone" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod bone" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment bone" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod bone" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb bone" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment bone" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod bone" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "lower leg bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member bone" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of leg bone" EXACT [OBOL:automatic]
synonym: "zeugopod of leg bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity bone" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity bone organ" EXACT [OBOL:automatic]
xref: MA:0000676
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005893 ! leg bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0004252
name: hindlimb stylopod muscle
namespace: uberon
alt_id: UBERON:0000374
alt_id: UBERON:BTO_0001367-FMA_22470
def: "A muscle organ that is part of a hindlimb stylopod (upper leg)[Obol]." [OBOL:automatic]
synonym: "muscle of thigh" EXACT [FMA:22470]
synonym: "thigh muscle" EXACT [FMA:22470]
synonym: "upper leg muscle" EXACT [MA:0000684]
xref: BTO:0001367
xref: FMA:22470
xref: MA:0000684
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 ! muscle of leg
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0004253
name: skin muscle
namespace: uberon
def: "A muscle organ that is part of a skin of body [Obol]." [OBOL:automatic]
synonym: "muscle organ of skin" EXACT [OBOL:automatic]
synonym: "skin muscle organ" EXACT [OBOL:automatic]
xref: MA:0002710
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002097 ! skin of body

[Term]
id: UBERON:0004254
name: forelimb zeugopod muscle
namespace: uberon
def: "A muscle organ that is part of a forelimb zeugopod (lower arm)[Obol]." [OBOL:automatic]
synonym: "forearm muscle" EXACT [FMA:37371]
synonym: "lower arm muscle" EXACT [MA:0000600]
synonym: "muscle of forearm" EXACT [FMA:37371]
xref: FMA:37371
xref: MA:0000600
xref: SCTID:181631004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001499 ! muscle of arm
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod

[Term]
id: UBERON:0004255
name: forelimb stylopod muscle
namespace: uberon
def: "A muscle organ that is part of a forelimb stylopod (upper arm)[Obol]." [OBOL:automatic]
synonym: "muscle of arm" RELATED INCONSISTENT [FMA:37370]
synonym: "upper arm muscle" EXACT [MA:0000606]
xref: FMA:37370
xref: MA:0000606
xref: SCTID:244979005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001499 ! muscle of arm
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod

[Term]
id: UBERON:0004256
name: hindlimb zeugopod muscle
namespace: uberon
def: "A muscle organ that is part of a hindlimb zeugopod (lower leg) [Obol]." [OBOL:automatic]
synonym: "lower leg muscle" EXACT [MA:0000678]
synonym: "muscle of leg" RELATED INCONSISTENT [FMA:22471]
xref: FMA:22471
xref: MA:0000678
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 ! muscle of leg
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0004258
name: back blood vessel
namespace: uberon
def: "A blood vessel that is part of a back [Obol]." [OBOL:automatic]
synonym: "blood vessel of back" EXACT [OBOL:automatic]
xref: MA:0000493
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003513 ! trunk blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0004265
name: outflow tract myocardium
namespace: uberon
def: "A myocardium that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "cardiac muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "heart muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "heart myocardium of outflow tract" EXACT [OBOL:automatic]
synonym: "muscle of heart of outflow tract" EXACT [OBOL:automatic]
synonym: "myocardium of outflow tract" EXACT [OBOL:automatic]
synonym: "outflow tract cardiac muscle" EXACT [OBOL:automatic]
synonym: "outflow tract heart muscle" EXACT [OBOL:automatic]
synonym: "outflow tract heart myocardium" EXACT [OBOL:automatic]
synonym: "outflow tract muscle of heart" EXACT [OBOL:automatic]
xref: EHDAA2:0001358
xref: MA:0000489
xref: VHOG:0000603
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002349 ! myocardium
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract

[Term]
id: UBERON:0004267
name: back connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a back [Obol]." [OBOL:automatic]
synonym: "back portion of connective tissue" EXACT [OBOL:automatic]
synonym: "back textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of back" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of back" EXACT [OBOL:automatic]
synonym: "textus connectivus of back" EXACT [OBOL:automatic]
xref: MA:0000495
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003586 ! trunk connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0004269
name: upper arm connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of upper arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper arm" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper arm" EXACT [OBOL:automatic]
synonym: "upper arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper arm textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000605
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003573 ! arm connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod

[Term]
id: UBERON:0004270
name: lower leg connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of lower leg" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "lower leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower leg textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower leg" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of leg connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of leg textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000677
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003569 ! leg connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0004273
name: cartilaginous joint suture
namespace: uberon
def: "A cranial suture that is part of a cartilaginous joint [Obol]." [OBOL:automatic]
synonym: "articulatio cartilaginea cranial suture" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranial sutures" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranial sutures set" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranium suture" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea suture of cranium" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial suture" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial sutures" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial sutures set" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranium suture" EXACT [OBOL:automatic]
synonym: "cartilaginous joint suture of cranium" EXACT [OBOL:automatic]
synonym: "cranial suture of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial suture of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranial sutures of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial sutures of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranial sutures set of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial sutures set of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranium suture of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranium suture of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "suture of cranium of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "suture of cranium of cartilaginous joint" EXACT [OBOL:automatic]
xref: MA:0001498
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 ! cranial suture
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: part_of UBERON:0002213 ! cartilaginous joint
relationship: part_of UBERON:0002213 ! cartilaginous joint

[Term]
id: UBERON:0004277
name: eye muscle
namespace: uberon
def: "A muscle that is part of the eye region." [OBOL:automatic]
xref: AAO:0000156
xref: MA:0000271
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycB4rvYA8cJwpEbGdrcN5Y29ycA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001577 ! muscle of face
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 {source="MA"} ! camera-type eye

[Term]
id: UBERON:0004288
name: skeleton
namespace: uberon
def: "all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton]
comment: Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons.
subset: uberon_slim
synonym: "set of all bones" EXACT []
synonym: "set of bones of body" EXACT []
xref: AEO:0000168
xref: EFO:0000806
xref: EHDAA2:0001843
xref: EHDAA:5047
xref: EHDAA:8005
xref: EHDAA:8041
xref: FMA:23875
xref: GAID:177
xref: galen:Skeleton
xref: MA:0003006
xref: MAT:0000032
xref: MESH:A.02.835
xref: MIAA:0000032
xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
xref: SCTID:361378004
xref: VAO:0000026
xref: XAO:0004053
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000480 ! anatomical group
disjoint_from: UBERON:0004770 ! articular system
relationship: part_of UBERON:0001434 ! skeletal system

[Term]
id: UBERON:0004290
name: dermomyotome
namespace: uberon
def: "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle." [http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=eurekah&part=A66768]
xref: AAO:0010572
xref: AEO:0000214
xref: EHDAA2:0003259
xref: ncithesaurus:Dermomyotome
xref: TAO:0001513
xref: VHOG:0000676
xref: ZFA:0001513
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000486 {source="EHDAA2"} ! multilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0002329 {source="EHDAA2", source="ZFA"} ! somite
relationship: part_of UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0004291
name: heart rudiment
namespace: uberon
def: "a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
synonym: "heart cone" EXACT [GO:0003313]
synonym: "rudimentary heart" EXACT [ZFA:0000115]
xref: TAO:0000115
xref: ZFA:0000115
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0003084 {source="ZFA"} ! heart primordium
relationship: develops_from UBERON:0004139 ! cardiogenic plate

[Term]
id: UBERON:0004296
name: respiratory system lymphatic vessel smooth muscle
namespace: uberon
def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001826
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004225 ! respiratory system smooth muscle
is_a: UBERON:0004232 ! lymphatic vessel smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003456 ! respiratory system lymphatic vessel
relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel

[Term]
id: UBERON:0004297
name: respiratory system blood vessel smooth muscle
namespace: uberon
def: "A blood vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001806
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004225 ! respiratory system smooth muscle
is_a: UBERON:0004237 ! blood vessel smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003504 ! respiratory system blood vessel
relationship: part_of UBERON:0003504 ! respiratory system blood vessel

[Term]
id: UBERON:0004300
name: distal phalanx
namespace: uberon
def: "Terminal phalanx located at the tip of the digits." [Wikipedia:Distal_phalanges]
comment: Taxon notes: In human anatomy, the distal phalanges of the four fingers and toes articulate proximally with the intermediate phalanges at the distal interphalangeal joints (DIP); in the thumb and big toe, with only two phalanges, the distal phalanges articulate proximally with the proximal phalanges. The distal phalanges carry and shape nails and claws and are therefore occasionally referred to as the ungual phalanges. The distal phalanges are cone-shaped in most mammals, including most primates, but relatively wide and flat in humans. AO notes:
synonym: "phalanx distalis" EXACT [Wikipedia:Distal_phalanges]
synonym: "terminal phalanx" EXACT [AAO:0010676]
synonym: "ungual phalanx" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
xref: AAO:0010676
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Scheme_human_hand_bones-en.svg/200px-Scheme_human_hand_bones-en.svg.png
xref: MA:0002914
xref: SCTID:299711006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003221 ! phalanx
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0009551 ! distal segment of digit
relationship: part_of UBERON:0009551 ! distal segment of digit

[Term]
id: UBERON:0004301
name: middle phalanx
namespace: uberon
def: "A phalanx located between proximal and distal phalanges[CJM]. Intermediate phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones of the finger and toe which lie in the middle, between the two wrinkly joints. The thumb and big toe do not have intermediate phalanges. In most other vertebrates, they have a corresponding place in their limbs, whether they be paw, wing, hoof or fin[WP]." [Wikipedia:Intermediate_phalanges]
comment: Taxon notes: in some groups such as whales, there are multiple intermediate phalanges. Editors note: consider using numbering system, and axioms to the effect that there is a single middle phalanx per finger in humans
synonym: "intermediate phalanx" EXACT []
xref: MA:0002915
xref: SCTID:299710007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003221 ! phalanx
relationship: distal_to UBERON:0004302 ! proximal phalanx
relationship: proximal_to UBERON:0004300 ! distal phalanx

[Term]
id: UBERON:0004302
name: proximal phalanx
namespace: uberon
def: "Proximal-most phalanx within a digit[CJM]. Proximal phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones at the base of a toe or finger, the prominent, knobby ends of which are often called the knuckles. In other vertebrates, proximal phalanges have a similar placement in the corresponding limbs, be they paw, wing or fin. In many species, they are the longest and thickest phalanx ('finger' bone)." [Wikipedia:Proximal_phalanges]
xref: MA:0002916
xref: SCTID:299708005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003221 ! phalanx

[Term]
id: UBERON:0004311
name: distal phalanx of hand digit 2
namespace: uberon
def: "A distal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of index finger" EXACT [FMA:23946]
synonym: "distal phalanx of second digit of hand" EXACT [FMA:23946]
synonym: "distal phalanx of second finger" EXACT [OBOL:automatic]
synonym: "hand digit 2 distal phalanx" EXACT [OBOL:automatic]
synonym: "second distal phalanx of hand" EXACT [FMA:23946]
synonym: "second finger distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23946
xref: SCTID:361784003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003636 ! hand digit 2 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2

[Term]
id: UBERON:0004312
name: distal phalanx of hand digit 3
namespace: uberon
def: "A distal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of middle finger" EXACT [FMA:23947]
synonym: "distal phalanx of third digit of hand" EXACT [FMA:23947]
synonym: "distal phalanx of third finger" EXACT [OBOL:automatic]
synonym: "hand digit 3 distal phalanx" EXACT [OBOL:automatic]
synonym: "third distal phalanx of hand" EXACT [FMA:23947]
synonym: "third finger distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23947
xref: SCTID:361786001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003637 ! hand digit 3 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3

[Term]
id: UBERON:0004313
name: distal phalanx of hand digit 4
namespace: uberon
def: "A distal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "4th finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of fourth digit of hand" EXACT [FMA:23948]
synonym: "distal phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of ring finger" EXACT [FMA:23948]
synonym: "fourth distal phalanx of hand" EXACT [FMA:23948]
synonym: "fourth finger distal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23948
xref: SCTID:361788000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003638 ! hand digit 4 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4

[Term]
id: UBERON:0004314
name: distal phalanx of hand digit 5
namespace: uberon
def: "A distal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "5th finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of fifth digit of hand" EXACT [FMA:23949]
synonym: "distal phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of little finger" EXACT [FMA:23949]
synonym: "fifth distal phalanx of hand" EXACT [FMA:23949]
synonym: "fifth finger distal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23949
xref: SCTID:361790004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003639 ! hand digit 5 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5

[Term]
id: UBERON:0004315
name: distal phalanx of foot digit 1
namespace: uberon
def: "A distal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "distal phalanx of big toe" EXACT [FMA:32627]
synonym: "distal phalanx of first digit of foot" EXACT [FMA:32627]
synonym: "distal phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "distal phalanx of great toe" EXACT [FMA:32627]
synonym: "distal phalanx of hallux" EXACT [OBOL:automatic]
synonym: "first distal phalanx of foot" EXACT [FMA:32627]
synonym: "foot digit 1 distal phalanx" EXACT [OBOL:automatic]
synonym: "hallux distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32627
xref: SCTID:361799003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003640 ! foot digit 1 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1

[Term]
id: UBERON:0004316
name: distal phalanx of foot digit 2
namespace: uberon
def: "A distal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "distal phalanx of second digit of foot" EXACT [FMA:32628]
synonym: "distal phalanx of second toe" EXACT [FMA:32628]
synonym: "foot digit 2 distal phalanx" EXACT [OBOL:automatic]
synonym: "second distal phalanx of foot" EXACT [FMA:32628]
xref: FMA:32628
xref: SCTID:361801000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003641 ! foot digit 2 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2

[Term]
id: UBERON:0004317
name: distal phalanx of foot digit 3
namespace: uberon
def: "A distal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "distal phalanx of third digit of foot" EXACT [FMA:32629]
synonym: "distal phalanx of third toe" EXACT [FMA:32629]
synonym: "foot digit 3 distal phalanx" EXACT [OBOL:automatic]
synonym: "third distal phalanx of foot" EXACT [FMA:32629]
xref: FMA:32629
xref: SCTID:361803002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003642 ! foot digit 3 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3

[Term]
id: UBERON:0004318
name: distal phalanx of foot digit 4
namespace: uberon
def: "A distal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "distal phalanx of fourth digit of foot" EXACT [FMA:32630]
synonym: "distal phalanx of fourth toe" EXACT [FMA:32630]
synonym: "foot digit 4 distal phalanx" EXACT [OBOL:automatic]
synonym: "fourth distal phalanx of foot" EXACT [FMA:32630]
xref: FMA:32630
xref: SCTID:361805009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003862 ! foot digit 4 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4

[Term]
id: UBERON:0004319
name: distal phalanx of foot digit 5
namespace: uberon
def: "A distal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of fifth digit of foot" EXACT [FMA:32631]
synonym: "distal phalanx of fifth toe" EXACT [FMA:32631]
synonym: "distal phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "distal phalanx of little toe" EXACT [FMA:32631]
synonym: "fifth distal phalanx of foot" EXACT [FMA:32631]
synonym: "foot digit 5 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32631
xref: SCTID:10770001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003863 ! foot digit 5 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5

[Term]
id: UBERON:0004320
name: middle phalanx of hand digit 2
namespace: uberon
def: "A middle phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 2" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of second finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of index finger" EXACT [FMA:23933]
synonym: "middle phalanx of second digit of hand" EXACT [FMA:23933]
synonym: "middle phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "second finger middle phalanx" EXACT [OBOL:automatic]
synonym: "second middle phalanx of hand" EXACT [FMA:23933]
xref: FMA:23933
xref: SCTID:263407002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003636 ! hand digit 2 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2

[Term]
id: UBERON:0004321
name: middle phalanx of hand digit 3
namespace: uberon
def: "A middle phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 3" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of third finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of middle finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of third digit of hand" EXACT [FMA:23934]
synonym: "middle phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "third finger middle phalanx" EXACT [OBOL:automatic]
synonym: "third middle phalanx of hand" EXACT [FMA:23934]
xref: FMA:23934
xref: SCTID:263408007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003637 ! hand digit 3 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3

[Term]
id: UBERON:0004322
name: middle phalanx of hand digit 4
namespace: uberon
def: "A middle phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "4th finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fourth middle phalanx of hand" EXACT [FMA:23935]
synonym: "hand digit 4 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of fourth digit of hand" EXACT [FMA:23935]
synonym: "middle phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of ring finger" EXACT [OBOL:automatic]
xref: FMA:23935
xref: SCTID:263409004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003638 ! hand digit 4 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4

[Term]
id: UBERON:0004323
name: middle phalanx of hand digit 5
namespace: uberon
def: "A middle phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "5th finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fifth middle phalanx of hand" EXACT [FMA:23936]
synonym: "hand digit 5 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of fifth digit of hand" EXACT [FMA:23936]
synonym: "middle phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of little finger" EXACT [OBOL:automatic]
xref: FMA:23936
xref: SCTID:263410009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003639 ! hand digit 5 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5

[Term]
id: UBERON:0004324
name: middle phalanx of foot digit 2
namespace: uberon
def: "A middle phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "middle phalanx of second digit of foot" EXACT [FMA:32623]
synonym: "middle phalanx of second toe" EXACT [FMA:32623]
synonym: "second middle phalanx of foot" EXACT [FMA:32623]
xref: FMA:32623
xref: SCTID:182152006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003641 ! foot digit 2 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2

[Term]
id: UBERON:0004325
name: middle phalanx of foot digit 3
namespace: uberon
def: "A middle phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "middle phalanx of third digit of foot" EXACT [FMA:32624]
synonym: "middle phalanx of third toe" EXACT [FMA:32624]
synonym: "third middle phalanx of foot" EXACT [FMA:32624]
xref: FMA:32624
xref: SCTID:182154007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003642 ! foot digit 3 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3

[Term]
id: UBERON:0004326
name: middle phalanx of foot digit 4
namespace: uberon
def: "A middle phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 middle phalanx" EXACT [OBOL:automatic]
synonym: "fourth middle phalanx of foot" EXACT [FMA:32625]
synonym: "intermediate phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of fourth digit of foot" EXACT [FMA:32625]
synonym: "middle phalanx of fourth toe" EXACT [OBOL:automatic]
xref: FMA:32625
xref: SCTID:182156009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003862 ! foot digit 4 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4

[Term]
id: UBERON:0004327
name: middle phalanx of foot digit 5
namespace: uberon
def: "A middle phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 5 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 5 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of little toe" EXACT [OBOL:automatic]
xref: FMA:230984
xref: SCTID:182158005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003863 ! foot digit 5 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5

[Term]
id: UBERON:0004328
name: proximal phalanx of hand digit 2
namespace: uberon
def: "A proximal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of index finger" EXACT [FMA:23919]
synonym: "proximal phalanx of second digit of hand" EXACT [FMA:23919]
synonym: "proximal phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "second proximal phalanx of hand" EXACT [FMA:23919]
xref: FMA:23919
xref: SCTID:263403003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003636 ! hand digit 2 phalanx
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2

[Term]
id: UBERON:0004329
name: proximal phalanx of hand digit 3
namespace: uberon
def: "A proximal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of middle finger" EXACT [FMA:23920]
synonym: "proximal phalanx of third digit of hand" EXACT [FMA:23920]
synonym: "proximal phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "third proximal phalanx of hand" EXACT [FMA:23920]
xref: FMA:23920
xref: SCTID:263404009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003637 ! hand digit 3 phalanx
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3

[Term]
id: UBERON:0004330
name: proximal phalanx of hand digit 4
namespace: uberon
def: "A proximal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "4th finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fourth proximal phalanx of hand" EXACT [FMA:23921]
synonym: "hand digit 4 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fourth digit of hand" EXACT [FMA:23921]
synonym: "proximal phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of ring finger" EXACT [FMA:23921]
xref: FMA:23921
xref: SCTID:263405005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003638 ! hand digit 4 phalanx
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4

[Term]
id: UBERON:0004331
name: proximal phalanx of hand digit 5
namespace: uberon
def: "A proximal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "5th finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fifth proximal phalanx of hand" EXACT [FMA:23922]
synonym: "hand digit 5 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fifth digit of hand" EXACT [FMA:23922]
synonym: "proximal phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of little finger" EXACT [FMA:23922]
xref: FMA:23922
xref: SCTID:263406006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003639 ! hand digit 5 phalanx
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5

[Term]
id: UBERON:0004332
name: proximal phalanx of foot digit 1
namespace: uberon
def: "A proximal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "foot digit 1 proximal phalanx" EXACT [OBOL:automatic]
synonym: "hallux proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of big toe" EXACT [FMA:43252]
synonym: "proximal phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "proximal phalanx of great toe" EXACT [FMA:43252]
synonym: "proximal phalanx of hallux" EXACT [OBOL:automatic]
xref: FMA:43252
xref: SCTID:182150003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003640 ! foot digit 1 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1

[Term]
id: UBERON:0004333
name: proximal phalanx of foot digit 2
namespace: uberon
def: "A proximal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "proximal phalanx of second digit of foot" EXACT [FMA:32618]
synonym: "proximal phalanx of second toe" EXACT [FMA:32618]
synonym: "second proximal phalanx of foot" EXACT [FMA:32618]
xref: FMA:32618
xref: SCTID:182151004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003641 ! foot digit 2 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2

[Term]
id: UBERON:0004334
name: proximal phalanx of foot digit 3
namespace: uberon
def: "A proximal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "proximal phalanx of third digit of foot" EXACT [FMA:32619]
synonym: "proximal phalanx of third toe" EXACT [FMA:32619]
synonym: "third proximal phalanx of foot" EXACT [FMA:32619]
xref: FMA:32619
xref: SCTID:182153001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003642 ! foot digit 3 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3

[Term]
id: UBERON:0004335
name: proximal phalanx of foot digit 4
namespace: uberon
def: "A proximal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 proximal phalanx" EXACT [OBOL:automatic]
synonym: "fourth proximal phalanx of foot" EXACT [FMA:32620]
synonym: "proximal phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fourth digit of foot" EXACT [FMA:32620]
synonym: "proximal phalanx of fourth toe" EXACT [FMA:32620]
xref: FMA:32620
xref: SCTID:182155008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003862 ! foot digit 4 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4

[Term]
id: UBERON:0004336
name: proximal phalanx of foot digit 5
namespace: uberon
def: "A proximal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "fifth proximal phalanx of foot" EXACT [FMA:32621]
synonym: "foot digit 5 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fifth digit of foot" EXACT [FMA:32621]
synonym: "proximal phalanx of fifth toe" EXACT [FMA:32621]
synonym: "proximal phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "proximal phalanx of little toe" EXACT [OBOL:automatic]
xref: FMA:32621
xref: SCTID:182157000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003863 ! foot digit 5 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5

[Term]
id: UBERON:0004337
name: distal phalanx of hand digit 1
namespace: uberon
def: "A distal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
comment: Taxon notes: The human pollical distal phalanx (PDP) has a pronounced insertion for the flexor pollicis longus (asymmetric towards the radial side), an ungual fossa, and a pair of dissymmetric ungual spines (the ulnar being more prominent). This asymmetry is necessary to ensure that the thumb pulp is always facing the pulps of the other digits, an osteological configuration which provides the maximum contact surface with held objects.[WP]
synonym: "distal phalanx of first digit of hand" EXACT [FMA:23945]
synonym: "distal phalanx of thumb" EXACT [OBOL:automatic]
synonym: "first distal phalanx of hand" EXACT [FMA:23945]
synonym: "PDP" EXACT [Wikipedia:Distal_phalanges#Thumb]
synonym: "pollical distal phalanx" EXACT [Wikipedia:Distal_phalanges#Thumb]
synonym: "thumb distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23945
xref: SCTID:182007006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003620 ! hand digit 1 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1

[Term]
id: UBERON:0004338
name: proximal phalanx of hand digit 1
namespace: uberon
def: "A proximal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "first proximal phalanx of hand" EXACT [FMA:23918]
synonym: "proximal phalanx of first digit of hand" EXACT [FMA:23918]
synonym: "proximal phalanx of thumb" EXACT [OBOL:automatic]
synonym: "thumb proximal" EXACT [OBOL:automatic]
xref: FMA:23918
xref: SCTID:181992006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003620 ! hand digit 1 phalanx
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1

[Term]
id: UBERON:0004339
name: calvarium
namespace: uberon
def: "the upper domelike portion of the skull[MP]. the upper part of the cranium and surrounds the cranial cavity containing the brain. It is formed from frontal, parietal, temporal and occipital bones." [MP:0000076, Wikipedia:Calvaria_(skull)]
comment: calvaria part_of neurocranium in FMA, but no definition. MP class now merged. Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria
synonym: "calva" EXACT [FMA:52800]
synonym: "calvaria" EXACT PLURAL [ZFA:0005606]
synonym: "skullcap" RELATED [ZFA:0005606]
synonym: "vault of skull" EXACT [EHDAA2:0002167]
xref: EHDAA2:0002167
xref: EHDAA:9538
xref: EMAPA:18016
xref: FMA:52800
xref: ncithesaurus:Skullcap
xref: SCTID:140592008
xref: VHOG:0000331
xref: ZFA:0005606
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0004341
name: primitive streak
namespace: uberon
def: "The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP]" [MP:0002231, Wikipedia:Primitive_streak]
comment: TODO - check
subset: early_development
xref: EHDAA2:0001525
xref: EHDAA:185
xref: EMAPA:16072
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray13.png/200px-Gray13.png
xref: ncithesaurus:Primitive_Streak
xref: SCTID:361438007
xref: VHOG:0001202
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0002532 ! epiblast

[Term]
id: UBERON:0004347
name: limb bud
namespace: uberon
def: "the mesenchymal outgrowth on the lateral trunk of the embryo that develops into a limb[MP]." [MP:0005650, Wikipedia:Limb_bud]
comment: induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm
synonym: "limb buds" EXACT PLURAL []
synonym: "limbbud" EXACT [GO:0060174]
xref: AAO:0010375
xref: BTO:0001640
xref: GAID:1307
xref: MESH:A.16.254.462
xref: ncithesaurus:Limb_Bud
xref: XAO:0003161
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004357 ! limb/fin bud
relationship: develops_from UBERON:0005733 ! limb field
relationship: develops_into UBERON:0002101 ! limb
relationship: induced_by UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm

[Term]
id: UBERON:0004356
name: apical ectodermal ridge
namespace: uberon
def: "multilayered ectodermal region at the distal tip of a limb bud necessary for the proper development of the underlying mesenchyme[MP]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]." [MP:0001676, Wikipedia:Apical_ectodermal_ridge]
comment: Functions: maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop
synonym: "AER" RELATED [MP:0001676]
xref: AAO:0010760
xref: ncithesaurus:Apical_Ectodermal_Ridge
xref: TAO:0002146
xref: XAO:0004121
xref: ZFA:0001702
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: induced_by UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0004357 ! limb/fin bud

[Term]
id: UBERON:0004357
name: limb/fin bud
namespace: uberon
comment: Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056]
synonym: "paired appendage bud" EXACT []
xref: VHOG:0001258
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0005732 ! limb/fin field
relationship: develops_into UBERON:0004708 ! limb/fin
relationship: has_part UBERON:0004356 ! apical ectodermal ridge
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0004361
name: stylohyoid ligament
namespace: uberon
def: "the fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone" [MP:0009918, Wikipedia:Stylohyoid_ligament]
synonym: "ligamentum stylohyoideum" EXACT [Wikipedia:Stylohyoid_ligament]
synonym: "ligamentum stylohyoideus" EXACT [Wikipedia:Stylohyoid_ligament]
synonym: "stylo-hyoid ligament" EXACT [MA:0002957]
xref: FMA:72308
xref: MA:0002957
xref: SCTID:66275001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: connects UBERON:0003960 {source="Wikipedia"} ! styloid process of temporal bone
relationship: connects UBERON:0003998 {source="Wikipedia"} ! hyoid bone lesser horn
relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage

[Term]
id: UBERON:0004362
name: mandibular arch
namespace: uberon
def: "First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_branchial_arch]
subset: uberon_slim
subset: vertebrate_core
synonym: "1st arch" RELATED [EHDAA2:0000006]
synonym: "1st pharyngeal arch" EXACT []
synonym: "branchial arch 1" EXACT SENSU []
synonym: "first branchial arch" EXACT SENSU []
synonym: "first pharyngeal arch" EXACT []
synonym: "first visceral arch" EXACT SENSU []
synonym: "pharyngeal arch 1" EXACT []
synonym: "visceral arch 1" EXACT SENSU []
xref: AAO:0010364
xref: EHDAA2:0000006
xref: EHDAA:573
xref: EMAPA:16118
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png
xref: ncithesaurus:First_Pharyngeal_Arch
xref: SCTID:308767008
xref: TAO:0001595
xref: VHOG:0000296
xref: XAO:0000097
xref: ZFA:0001612
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002539 ! pharyngeal arch

[Term]
id: UBERON:0004363
name: aortic arch
namespace: uberon
alt_id: UBERON:0004342
alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059
def: "One of a series of paired embryological vascular structures which give rise to several major arteries." [MP:0002672, Wikipedia:Aortic_arches]
comment: Usage notes: Do not confuse with arch of aorta. Editor notes: add specific artery derivatives. Development notes: The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches. Taxon notes: Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods
subset: uberon_slim
subset: vertebrate_core
synonym: "aortic arches" EXACT PLURAL [ZFA:0005004]
synonym: "branchial aortic arches " EXACT PLURAL [ZFIN:ZDB-PUB-080512-6]
synonym: "branchial arch artery" EXACT [EMAPA:16684]
synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672]
xref: AAO:0010414
xref: EFO:0003695
xref: EHDAA2:0000132
xref: EHDAA2:0000186
xref: EHDAA:398
xref: EHDAA:7327
xref: EMAPA:16684
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray473.png/200px-Gray473.png
xref: ncithesaurus:Aortic_Arch
xref: TAO:0005004
xref: VHOG:0000122
xref: XAO:0000341
xref: ZFA:0005004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 {source="ZFA"} ! artery
is_a: UBERON:0003351 ! pharyngeal epithelium
is_a: UBERON:0003469 ! respiratory system artery
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0007497 ! developing epithelial placode
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_into UBERON:0001637 ! artery
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0007303 {source="ZFA"} ! pharyngeal vasculature
relationship: part_of UBERON:0008814 ! pharyngeal system

[Term]
id: UBERON:0004368
name: Reichert's cartilage
namespace: uberon
def: "a continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure" [doi:10.1111/j.1469-7580.2006.00524.x, MP:0004916]
comment: AO notes: in EHDAA2 this also develops from 3rd arch Mes from NC. Development notes: Classically defined as: a structure... develop the stapes, the styloid processes, the stylohyoid ligaments, and the lesser cornua of the hyoid bone; its proximal end gives rise to the stylohyoid ligament. Relationship to stapes disputed.
synonym: "hyaloid cartilage" EXACT [MP:0004916]
synonym: "hyoid cartilage" EXACT [EHDAA2:0000793]
synonym: "Reichert cartilage" EXACT []
synonym: "second branchial arch cartilage" EXACT []
synonym: "second pharyngeal arch cartilage" EXACT [MP:0004916]
xref: EHDAA2:0000793
xref: EMAPA:17622
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0010354 ! Reichert's cartilage pre-cartilage condensation
relationship: part_of UBERON:0001557 {source="EHDAA2"} ! upper respiratory tract
relationship: part_of UBERON:0003066 ! hyoid arch

[Term]
id: UBERON:0004375
name: bone of appendage
namespace: uberon
def: "A bone that is part of an appendage [Obol]." [OBOL:automatic]
synonym: "appendage bone" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000026 ! appendage
relationship: part_of UBERON:0000026 ! appendage

[Term]
id: UBERON:0004376
name: fin bone
namespace: uberon
def: "A bone that is part of a fin [Obol]." [OBOL:automatic]
synonym: "bone of fin" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0008897 ! fin
relationship: part_of UBERON:0008897 ! fin

[Term]
id: UBERON:0004377
name: distal metaphysis
namespace: uberon
synonym: "distal diaphyseal end of long bone" EXACT [FMA:32824]
xref: FMA:32824
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001438 ! metaphysis
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: in_distal_side_of UBERON:0004769 ! diaphysis
relationship: in_distal_side_of UBERON:0004769 ! diaphysis

[Term]
id: UBERON:0004378
name: proximal metaphysis
namespace: uberon
synonym: "proximal diaphyseal end of long bone" EXACT [FMA:32823]
xref: FMA:32823
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001438 ! metaphysis
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: in_proximal_side_of UBERON:0004769 ! diaphysis
relationship: in_proximal_side_of UBERON:0004769 ! diaphysis

[Term]
id: UBERON:0004379
name: distal epiphysis
namespace: uberon
synonym: "distal end of long bone" EXACT [FMA:32822]
xref: FMA:32822
xref: SCTID:279999006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: adjacent_to UBERON:0004377 ! distal metaphysis
relationship: adjacent_to UBERON:0004377 ! distal metaphysis

[Term]
id: UBERON:0004380
name: proximal epiphysis
namespace: uberon
synonym: "proximal end of long bone" EXACT [FMA:32821]
xref: FMA:32821
xref: SCTID:279998003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: adjacent_to UBERON:0004378 ! proximal metaphysis
relationship: adjacent_to UBERON:0004378 ! proximal metaphysis

[Term]
id: UBERON:0004381
name: skeleton of limb
namespace: uberon
def: "The collection of all skeletal elements in an individual limb." [UBERON:cjm]
comment: Note that EHDAA2 considers hip and shoulder joints part of limb skeleton
synonym: "limb skeleton" EXACT [EHDAA2:0002221]
synonym: "set of bones of limb" EXACT []
xref: EHDAA2:0002221
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010712 ! limb skeleton subdivision
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002101 ! limb
relationship: develops_from UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm
relationship: part_of UBERON:0002091 {source="cjm"} ! entire appendicular skeleton
relationship: part_of UBERON:0002101 ! limb
relationship: subdivision_of UBERON:0002101 ! limb

[Term]
id: UBERON:0004382
name: epiphysis of humerus
namespace: uberon
def: "An epiphysis that is part of a humerus [Obol]." [OBOL:automatic]
synonym: "humeral epiphysis" EXACT [OBOL:automatic]
xref: FMA:32825
xref: SCTID:313054009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus

[Term]
id: UBERON:0004383
name: epiphysis of tibia
namespace: uberon
def: "An epiphysis that is part of a tibia [Obol]." [OBOL:automatic]
synonym: "tibial epiphysis" EXACT [FMA:33112]
xref: FMA:33112
xref: SCTID:314626006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia

[Term]
id: UBERON:0004384
name: epiphysis of femur
namespace: uberon
def: "An epiphysis that is part of a femur [Obol]." [OBOL:automatic]
synonym: "femoral epiphysis" EXACT [FMA:32838]
xref: FMA:32838
xref: SCTID:314625005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur

[Term]
id: UBERON:0004385
name: epiphysis of radius
namespace: uberon
def: "An epiphysis that is part of a radius [Obol]." [OBOL:automatic]
synonym: "radial epiphysis" EXACT [FMA:33770]
xref: FMA:33770
xref: SCTID:313055005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone

[Term]
id: UBERON:0004386
name: epiphysis of ulna
namespace: uberon
def: "An epiphysis that is part of a ulna [Obol]." [OBOL:automatic]
synonym: "ulnar epiphysis" EXACT [FMA:33748]
xref: FMA:33748
xref: SCTID:313056006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna

[Term]
id: UBERON:0004387
name: epiphysis of phalanx of finger
namespace: uberon
def: "An epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
xref: FMA:240707
xref: SCTID:314620000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004446 ! epiphysis of phalanx
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0001436 ! phalanx of finger

[Term]
id: UBERON:0004388
name: epiphysis of fibula
namespace: uberon
def: "An epiphysis that is part of a fibula [Obol]." [OBOL:automatic]
synonym: "fibula epiphysis" EXACT [FMA:33726]
xref: FMA:33726
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
relationship: part_of UBERON:0001446 ! fibula

[Term]
id: UBERON:0004389
name: epiphysis of metatarsal bone
namespace: uberon
def: "An epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic]
synonym: "metatarsal bone epiphysis" EXACT [FMA:33814]
xref: FMA:33814
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0001448 ! metatarsal bone

[Term]
id: UBERON:0004390
name: epiphysis of metacarpal bone
namespace: uberon
def: "An epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic]
synonym: "metacarpal bone epiphysis" EXACT [FMA:33792]
xref: FMA:33792
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0002374 ! metacarpal bone

[Term]
id: UBERON:0004391
name: epiphysis of first metacarpal bone
namespace: uberon
def: "An epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "first metacarpal bone epiphysis" EXACT [FMA:33793]
xref: FMA:33793
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1
relationship: part_of UBERON:0003645 ! metacarpal bone of digit 1

[Term]
id: UBERON:0004392
name: epiphysis of second metacarpal bone
namespace: uberon
def: "An epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "second metacarpal bone epiphysis" EXACT [FMA:33794]
xref: FMA:33794
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2
relationship: part_of UBERON:0003646 ! metacarpal bone of digit 2

[Term]
id: UBERON:0004393
name: epiphysis of third metacarpal bone
namespace: uberon
def: "An epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "third metacarpal bone epiphysis" EXACT [FMA:86328]
xref: FMA:86328
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3
relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3

[Term]
id: UBERON:0004394
name: epiphysis of fourth metacarpal bone
namespace: uberon
def: "An epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "fourth metacarpal bone epiphysis" EXACT [FMA:86329]
xref: FMA:86329
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4
relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4

[Term]
id: UBERON:0004395
name: epiphysis of first metatarsal bone
namespace: uberon
def: "An epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "first metatarsal bone epiphysis" EXACT [FMA:33815]
xref: FMA:33815
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1
relationship: part_of UBERON:0003650 ! metatarsal bone of digit 1

[Term]
id: UBERON:0004396
name: epiphysis of second metatarsal bone
namespace: uberon
def: "An epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "second metatarsal bone epiphysis" EXACT [FMA:33816]
xref: FMA:33816
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2
relationship: part_of UBERON:0003651 ! metatarsal bone of digit 2

[Term]
id: UBERON:0004397
name: epiphysis of third metatarsal bone
namespace: uberon
def: "An epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "third metatarsal bone epiphysis" EXACT [FMA:86313]
xref: FMA:86313
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3
relationship: part_of UBERON:0003652 ! metatarsal bone of digit 3

[Term]
id: UBERON:0004398
name: epiphysis of fourth metatarsal bone
namespace: uberon
def: "An epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "fourth metatarsal bone epiphysis" EXACT [FMA:86314]
xref: FMA:86314
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4
relationship: part_of UBERON:0003653 ! metatarsal bone of digit 4

[Term]
id: UBERON:0004399
name: epiphysis of fifth metatarsal bone
namespace: uberon
def: "An epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic]
synonym: "fifth metatarsal bone epiphysis" EXACT [FMA:86315]
xref: FMA:86315
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5
relationship: part_of UBERON:0003654 ! metatarsal bone of digit 5

[Term]
id: UBERON:0004400
name: bone tissue of epiphysis
namespace: uberon
def: "A portion of bone tissue that is part of a epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241364
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005808 ! bone tissue of long bone
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0001437 ! epiphysis
relationship: part_of UBERON:0001437 ! epiphysis

[Term]
id: UBERON:0004401
name: bone tissue of distal epiphysis
namespace: uberon
def: "A portion of bone tissue that is part of a distal epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241374
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004400 ! bone tissue of epiphysis
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0004379 ! distal epiphysis
relationship: part_of UBERON:0004379 ! distal epiphysis

[Term]
id: UBERON:0004402
name: bone tissue of proximal epiphysis
namespace: uberon
def: "A portion of bone tissue that is part of a proximal epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241372
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004400 ! bone tissue of epiphysis
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0004380 ! proximal epiphysis
relationship: part_of UBERON:0004380 ! proximal epiphysis

[Term]
id: UBERON:0004403
name: periosteum of epiphysis
namespace: uberon
def: "A periosteum that is part of a epiphysis [Obol]." [OBOL:automatic]
synonym: "epiphysis periosteum" EXACT [FMA:32687]
xref: FMA:32687
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002515 ! periosteum
intersection_of: UBERON:0002515 ! periosteum
intersection_of: part_of UBERON:0001437 ! epiphysis
relationship: part_of UBERON:0001437 ! epiphysis

[Term]
id: UBERON:0004404
name: distal epiphysis of humerus
namespace: uberon
def: "A distal epiphysis that is part of a humerus [Obol]." [OBOL:automatic]
synonym: "distal end of humerus" EXACT [FMA:32826]
synonym: "lower end of humerus" EXACT [FMA:32826]
xref: FMA:32826
xref: SCTID:310655007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004382 ! epiphysis of humerus
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus

[Term]
id: UBERON:0004405
name: distal epiphysis of tibia
namespace: uberon
def: "A distal epiphysis that is part of a tibia [Obol]." [OBOL:automatic]
synonym: "distal end of tibia" EXACT [FMA:33116]
synonym: "lower end of tibia" EXACT [FMA:33116]
xref: FMA:33116
xref: SCTID:302527001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004383 ! epiphysis of tibia
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia

[Term]
id: UBERON:0004406
name: distal epiphysis of femur
namespace: uberon
def: "A distal epiphysis that is part of a femur [Obol]." [OBOL:automatic]
synonym: "distal femoral epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "distal head of femur" RELATED [AAO:0000893]
xref: AAO:0000893
xref: FMA:32844
xref: SCTID:280016000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004384 ! epiphysis of femur
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur

[Term]
id: UBERON:0004407
name: distal epiphysis of radius
namespace: uberon
def: "A distal epiphysis that is part of a radius [Obol]." [OBOL:automatic]
synonym: "distal end of radius" EXACT [FMA:33776]
synonym: "lower end of radius" EXACT [FMA:33776]
xref: FMA:33776
xref: SCTID:280013008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004385 ! epiphysis of radius
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone

[Term]
id: UBERON:0004408
name: distal epiphysis of ulna
namespace: uberon
def: "A distal epiphysis that is part of a ulna [Obol]." [OBOL:automatic]
synonym: "distal end of ulna" EXACT [FMA:33754]
synonym: "lower end of ulna" EXACT [FMA:33754]
xref: FMA:33754
xref: SCTID:302521000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004386 ! epiphysis of ulna
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna

[Term]
id: UBERON:0004409
name: distal epiphysis of phalanx of finger
namespace: uberon
def: "A distal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
xref: FMA:226577
xref: SCTID:280046002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004387 ! epiphysis of phalanx of finger
is_a: UBERON:0004448 ! distal epiphysis of phalanx
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0001436 ! phalanx of finger

[Term]
id: UBERON:0004410
name: distal epiphysis of fibula
namespace: uberon
def: "A distal epiphysis that is part of a fibula [Obol]." [OBOL:automatic]
synonym: "distal end of fibula" EXACT [FMA:33732]
synonym: "lower end of fibula" EXACT [FMA:33732]
xref: FMA:33732
xref: SCTID:129111008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004388 ! epiphysis of fibula
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
relationship: part_of UBERON:0001446 ! fibula

[Term]
id: UBERON:0004411
name: proximal epiphysis of humerus
namespace: uberon
def: "The upper extremity of the humerus (proximal humerus) consists of a large rounded head joined to the body by a constricted portion called the neck, and two eminences, the greater and lesser tubercles." [Wikipedia:Upper_extremity_of_humerus]
synonym: "head of the humerus" RELATED [Wikipedia:Upper_extremity_of_humerus]
synonym: "humeral head" RELATED [Wikipedia:Upper_extremity_of_humerus]
synonym: "proximal end of humerus" EXACT [FMA:23362]
synonym: "proximal humeral epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "proximal humerus" RELATED [Wikipedia:Upper_extremity_of_humerus]
synonym: "upper end of humerus" EXACT [FMA:23362]
xref: FMA:23362
xref: ncithesaurus:Head_of_the_Humerus
xref: SCTID:280028008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004382 ! epiphysis of humerus
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus

[Term]
id: UBERON:0004412
name: proximal epiphysis of femur
namespace: uberon
def: "A proximal epiphysis that is part of a femur [Obol]." [OBOL:automatic]
synonym: "proximal femoral epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
xref: FMA:32841
xref: SCTID:244702009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004384 ! epiphysis of femur
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur

[Term]
id: UBERON:0004413
name: proximal epiphysis of radius
namespace: uberon
def: "A proximal epiphysis that is part of a radius [Obol]." [OBOL:automatic]
synonym: "proximal end of radius" EXACT [FMA:39780]
synonym: "proximal radial epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "upper end of radius" EXACT [FMA:39780]
xref: FMA:39780
xref: SCTID:280029000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004385 ! epiphysis of radius
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone

[Term]
id: UBERON:0004414
name: proximal epiphysis of phalanx of finger
namespace: uberon
def: "A proximal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of finger" EXACT [FMA:226482]
synonym: "base of phalanx of finger" EXACT [FMA:226482]
synonym: "basis phalangis manus" EXACT [FMA:226482, FMA:TA]
xref: FMA:226482
xref: SCTID:272704004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004387 ! epiphysis of phalanx of finger
is_a: UBERON:0004447 ! proximal epiphysis of phalanx
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0001436 ! phalanx of finger

[Term]
id: UBERON:0004415
name: proximal epiphysis of metatarsal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic]
synonym: "base of metatarsal bone" EXACT [FMA:33817]
synonym: "basis ossis metatarsi" EXACT [FMA:33817, FMA:TA]
synonym: "proximal end of metatarsal bone" EXACT [FMA:33817]
synonym: "upper end of metatarsal bone" EXACT [FMA:33817]
xref: FMA:33817
xref: SCTID:119545008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0001448 ! metatarsal bone

[Term]
id: UBERON:0004416
name: proximal epiphysis of metacarpal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic]
synonym: "base of metacarpal bone" EXACT [FMA:33795]
synonym: "basis ossis metacarpi" EXACT [FMA:33795, FMA:TA]
synonym: "metacarpal bone base" EXACT [FMA:33795]
synonym: "proximal end of metacarpal bone" EXACT [FMA:33795]
synonym: "upper end of metacarpal bone" EXACT [FMA:33795]
xref: FMA:33795
xref: SCTID:272695001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0002374 ! metacarpal bone

[Term]
id: UBERON:0004417
name: proximal epiphysis of phalanx of thumb
namespace: uberon
def: "A proximal epiphysis that is part of a hand digit 1 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of thumb" EXACT [FMA:37489]
synonym: "base of phalanx of first digit of hand" EXACT [FMA:37489]
synonym: "base of phalanx of thumb" EXACT [FMA:37489]
xref: FMA:37489
xref: SCTID:272700008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003620 ! hand digit 1 phalanx
relationship: part_of UBERON:0003620 ! hand digit 1 phalanx

[Term]
id: UBERON:0004418
name: proximal epiphysis of phalanx of index finger
namespace: uberon
def: "A proximal epiphysis that is part of a hand digit 2 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of index finger" EXACT [FMA:37498]
synonym: "base of phalanx of index finger" EXACT [FMA:37498]
synonym: "base of phalanx of second digit of hand" EXACT [FMA:37498]
synonym: "base of phalanx of second finger" EXACT [FMA:37498]
xref: FMA:37498
xref: SCTID:368307004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003636 ! hand digit 2 phalanx
relationship: part_of UBERON:0003636 ! hand digit 2 phalanx

[Term]
id: UBERON:0004419
name: proximal epiphysis of phalanx of middle finger
namespace: uberon
def: "A proximal epiphysis that is part of a hand digit 3 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of middle finger" EXACT [FMA:37510]
synonym: "base of phalanx of middle finger" EXACT [FMA:37510]
synonym: "base of phalanx of third digit of hand" EXACT [FMA:37510]
synonym: "base of phalanx of third finger" EXACT [FMA:37510]
xref: FMA:37510
xref: SCTID:181997000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003637 ! hand digit 3 phalanx
relationship: part_of UBERON:0003637 ! hand digit 3 phalanx

[Term]
id: UBERON:0004420
name: proximal epiphysis of phalanx of ring finger
namespace: uberon
def: "A proximal epiphysis that is part of a hand digit 4 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of ring finger" EXACT [FMA:37522]
synonym: "base of phalanx of fourth digit of hand" EXACT [FMA:37522]
synonym: "base of phalanx of fourth finger" EXACT [FMA:37522]
synonym: "base of phalanx of ring finger" EXACT [FMA:37522]
xref: FMA:37522
xref: SCTID:368337008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003638 ! hand digit 4 phalanx
relationship: part_of UBERON:0003638 ! hand digit 4 phalanx

[Term]
id: UBERON:0004421
name: proximal epiphysis of phalanx of little finger
namespace: uberon
def: "A proximal epiphysis that is part of a hand digit 5 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of fifth finger" EXACT [FMA:37534]
synonym: "basal epiphysis of phalanx of little finger" EXACT [FMA:37534]
synonym: "base of phalanx of fifth digit of hand" EXACT [FMA:37534]
synonym: "base of phalanx of fifth finger" EXACT [FMA:37534]
synonym: "base of phalanx of little finger" EXACT [FMA:37534]
xref: FMA:37534
xref: SCTID:368351008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003639 ! hand digit 5 phalanx
relationship: part_of UBERON:0003639 ! hand digit 5 phalanx

[Term]
id: UBERON:0004422
name: proximal epiphysis of first metacarpal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "base of first metacarpal bone" EXACT [FMA:42788]
synonym: "first metacarpal bone base" EXACT [FMA:42788]
xref: FMA:42788
xref: SCTID:181978000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004391 ! epiphysis of first metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1
relationship: part_of UBERON:0003645 ! metacarpal bone of digit 1

[Term]
id: UBERON:0004423
name: proximal epiphysis of second metacarpal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "base of second metacarpal bone" EXACT [FMA:42791]
synonym: "proximal end of second metacarpal bone" EXACT [FMA:42791]
synonym: "second metacarpal bone base" EXACT [FMA:42791]
xref: FMA:42791
xref: SCTID:263461004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004392 ! epiphysis of second metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2
relationship: part_of UBERON:0003646 ! metacarpal bone of digit 2

[Term]
id: UBERON:0004424
name: proximal epiphysis of third metacarpal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "base of third metacarpal bone" EXACT [FMA:42794]
synonym: "proximal end of third metacarpal bone" EXACT [FMA:42794]
synonym: "third metacarpal bone base" EXACT [FMA:42794]
xref: FMA:42794
xref: SCTID:263465008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004393 ! epiphysis of third metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3
relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3

[Term]
id: UBERON:0004425
name: proximal epiphysis of fourth metacarpal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "base of fourth metacarpal bone" EXACT [FMA:42797]
synonym: "fourth metacarpal bone base" EXACT [FMA:42797]
synonym: "proximal end of fourth metacarpal bone" EXACT [FMA:42797]
xref: FMA:42797
xref: SCTID:263469002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004394 ! epiphysis of fourth metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4
relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4

[Term]
id: UBERON:0004426
name: proximal epiphysis of fifth metacarpal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metacarpal bone of digit 5 [Obol]." [OBOL:automatic]
synonym: "base of fifth metacarpal bone" EXACT [FMA:42800]
synonym: "fifth metacarpal bone base" EXACT [FMA:42800]
synonym: "proximal end of fifth metacarpal bone" EXACT [FMA:42800]
xref: FMA:42800
xref: SCTID:263473004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003649 ! metacarpal bone of digit 5
relationship: part_of UBERON:0003649 ! metacarpal bone of digit 5

[Term]
id: UBERON:0004427
name: proximal epiphysis of first metatarsal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "base of first metatarsal bone" EXACT [FMA:42963]
synonym: "proximal end of first metatarsal bone" EXACT [FMA:42963]
xref: FMA:42963
xref: SCTID:182124002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004395 ! epiphysis of first metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1
relationship: part_of UBERON:0003650 ! metatarsal bone of digit 1

[Term]
id: UBERON:0004428
name: proximal epiphysis of second metatarsal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "base of second metatarsal bone" EXACT [FMA:42964]
synonym: "proximal end of second metatarsal bone" EXACT [FMA:42964]
xref: FMA:42964
xref: SCTID:182130002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004396 ! epiphysis of second metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2
relationship: part_of UBERON:0003651 ! metatarsal bone of digit 2

[Term]
id: UBERON:0004429
name: proximal epiphysis of third metatarsal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "base of third metatarsal bone" EXACT [FMA:42965]
synonym: "proximal end of third metatarsal bone" EXACT [FMA:42965]
xref: FMA:42965
xref: SCTID:182135007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004397 ! epiphysis of third metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3
relationship: part_of UBERON:0003652 ! metatarsal bone of digit 3

[Term]
id: UBERON:0004430
name: proximal epiphysis of fourth metatarsal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "base of fourth metatarsal bone" EXACT [FMA:42966]
synonym: "proximal end of fourth metatarsal bone" EXACT [FMA:42966]
xref: FMA:42966
xref: SCTID:182140004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004398 ! epiphysis of fourth metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4
relationship: part_of UBERON:0003653 ! metatarsal bone of digit 4

[Term]
id: UBERON:0004431
name: proximal epiphysis of fifth metatarsal bone
namespace: uberon
def: "A proximal epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic]
synonym: "base of fifth metatarsal bone" EXACT [FMA:42967]
synonym: "proximal end of fifth metatarsal bone" EXACT [FMA:42967]
xref: FMA:42967
xref: SCTID:182145009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004399 ! epiphysis of fifth metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5
relationship: part_of UBERON:0003654 ! metatarsal bone of digit 5

[Term]
id: UBERON:0004432
name: proximal epiphysis of distal phalanx of index finger
namespace: uberon
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 2 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of distal phalanx of index finger" EXACT [FMA:37505]
synonym: "base of distal phalanx of index finger" EXACT [FMA:37505]
synonym: "base of distal phalanx of second digit of hand" EXACT [FMA:37505]
synonym: "base of distal phalanx of second finger" EXACT [FMA:37505]
xref: FMA:37505
xref: SCTID:263445001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004418 ! proximal epiphysis of phalanx of index finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004311 ! distal phalanx of hand digit 2
relationship: part_of UBERON:0004311 ! distal phalanx of hand digit 2

[Term]
id: UBERON:0004433
name: proximal epiphysis of distal phalanx of middle finger
namespace: uberon
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 3 [Obol]." [OBOL:automatic]
synonym: "base of distal phalanx of middle finger" EXACT [FMA:37517]
synonym: "base of distal phalanx of third digit of hand" EXACT [FMA:37517]
synonym: "base of distal phalanx of third finger" EXACT [FMA:37517]
xref: FMA:37517
xref: SCTID:263446000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004419 ! proximal epiphysis of phalanx of middle finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004312 ! distal phalanx of hand digit 3
relationship: part_of UBERON:0004312 ! distal phalanx of hand digit 3

[Term]
id: UBERON:0004434
name: proximal epiphysis of distal phalanx of ring finger
namespace: uberon
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 4 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of distal phalanx of fourth finger" EXACT [FMA:37529]
synonym: "basal epiphysis of distal phalanx of ring finger" EXACT [FMA:37529]
synonym: "base of distal phalanx of fourth digit of hand" EXACT [FMA:37529]
synonym: "base of distal phalanx of fourth finger" EXACT [FMA:37529]
synonym: "base of distal phalanx of ring finger" EXACT [FMA:37529]
xref: FMA:37529
xref: SCTID:263447009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004420 ! proximal epiphysis of phalanx of ring finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004313 ! distal phalanx of hand digit 4
relationship: part_of UBERON:0004313 ! distal phalanx of hand digit 4

[Term]
id: UBERON:0004435
name: proximal epiphysis of distal phalanx of little finger
namespace: uberon
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 5 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of distal phalanx of fifth finger" EXACT [FMA:37541]
synonym: "basal epiphysis of distal phalanx of little finger" EXACT [FMA:37541]
synonym: "base of distal phalanx of fifth digit of hand" EXACT [FMA:37541]
synonym: "base of distal phalanx of fifth finger" EXACT [FMA:37541]
synonym: "base of distal phalanx of little finger" EXACT [FMA:37541]
xref: FMA:37541
xref: SCTID:263448004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004421 ! proximal epiphysis of phalanx of little finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004314 ! distal phalanx of hand digit 5
relationship: part_of UBERON:0004314 ! distal phalanx of hand digit 5

[Term]
id: UBERON:0004436
name: proximal epiphysis of middle phalanx of index finger
namespace: uberon
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 2 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of index finger" EXACT [FMA:37502]
synonym: "base of middle phalanx of index finger" EXACT [FMA:37502]
synonym: "base of middle phalanx of second digit of hand" EXACT [FMA:37502]
synonym: "base of middle phalanx of second finger" EXACT [FMA:37502]
xref: FMA:37502
xref: SCTID:263428006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004418 ! proximal epiphysis of phalanx of index finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004320 ! middle phalanx of hand digit 2
relationship: part_of UBERON:0004320 ! middle phalanx of hand digit 2

[Term]
id: UBERON:0004437
name: proximal epiphysis of middle phalanx of middle finger
namespace: uberon
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 3 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of middle finger" EXACT [FMA:37514]
synonym: "base of middle phalanx of middle finger" EXACT [FMA:37514]
synonym: "base of middle phalanx of third digit of hand" EXACT [FMA:37514]
synonym: "base of middle phalanx of third finger" EXACT [FMA:37514]
xref: FMA:37514
xref: SCTID:263429003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004419 ! proximal epiphysis of phalanx of middle finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004321 ! middle phalanx of hand digit 3
relationship: part_of UBERON:0004321 ! middle phalanx of hand digit 3

[Term]
id: UBERON:0004438
name: proximal epiphysis of middle phalanx of ring finger
namespace: uberon
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 4 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of fourth finger" EXACT [FMA:37526]
synonym: "basal epiphysis of middle phalanx of ring finger" EXACT [FMA:37526]
synonym: "base of middle phalanx of fourth digit of hand" EXACT [FMA:37526]
synonym: "base of middle phalanx of fourth finger" EXACT [FMA:37526]
synonym: "base of middle phalanx of ring finger" EXACT [FMA:37526]
xref: FMA:37526
xref: SCTID:263430008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004420 ! proximal epiphysis of phalanx of ring finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004322 ! middle phalanx of hand digit 4
relationship: part_of UBERON:0004322 ! middle phalanx of hand digit 4

[Term]
id: UBERON:0004439
name: proximal epiphysis of middle phalanx of little finger
namespace: uberon
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 5 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of fifth finger" EXACT [FMA:37538]
synonym: "basal epiphysis of middle phalanx of little finger" EXACT [FMA:37538]
synonym: "base of middle phalanx of fifth digit of hand" EXACT [FMA:37538]
synonym: "base of middle phalanx of fifth finger" EXACT [FMA:37538]
synonym: "base of middle phalanx of little finger" EXACT [FMA:37538]
xref: FMA:37538
xref: SCTID:263431007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004421 ! proximal epiphysis of phalanx of little finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004323 ! middle phalanx of hand digit 5
relationship: part_of UBERON:0004323 ! middle phalanx of hand digit 5

[Term]
id: UBERON:0004440
name: proximal epiphysis of proximal phalanx of index finger
namespace: uberon
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 2 [Obol]." [OBOL:automatic]
synonym: "base of proximal phalanx of index finger" EXACT [FMA:37499]
synonym: "base of proximal phalanx of second digit of hand" EXACT [FMA:37499]
synonym: "base of proximal phalanx of second finger" EXACT [FMA:37499]
xref: FMA:37499
xref: SCTID:263412001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004418 ! proximal epiphysis of phalanx of index finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004328 ! proximal phalanx of hand digit 2
relationship: part_of UBERON:0004328 ! proximal phalanx of hand digit 2

[Term]
id: UBERON:0004441
name: proximal epiphysis of proximal phalanx of middle finger
namespace: uberon
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 3 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of middle finger" EXACT [FMA:37511]
synonym: "base of proximal phalanx of middle finger" EXACT [FMA:37511]
synonym: "base of proximal phalanx of third digit of hand" EXACT [FMA:37511]
synonym: "base of proximal phalanx of third finger" EXACT [FMA:37511]
xref: FMA:37511
xref: SCTID:263413006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004419 ! proximal epiphysis of phalanx of middle finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004329 ! proximal phalanx of hand digit 3
relationship: part_of UBERON:0004329 ! proximal phalanx of hand digit 3

[Term]
id: UBERON:0004442
name: proximal epiphysis of proximal phalanx of ring finger
namespace: uberon
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 4 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of fourth finger" EXACT [FMA:37523]
synonym: "basal epiphysis of proximal phalanx of ring finger" EXACT [FMA:37523]
synonym: "base of proximal phalanx of fourth digit of hand" EXACT [FMA:37523]
synonym: "base of proximal phalanx of fourth finger" EXACT [FMA:37523]
synonym: "base of proximal phalanx of ring finger" EXACT [FMA:37523]
xref: FMA:37523
xref: SCTID:263414000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004420 ! proximal epiphysis of phalanx of ring finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004330 ! proximal phalanx of hand digit 4
relationship: part_of UBERON:0004330 ! proximal phalanx of hand digit 4

[Term]
id: UBERON:0004443
name: proximal epiphysis of proximal phalanx of little finger
namespace: uberon
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 5 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of little finger" EXACT [FMA:37535]
synonym: "base of proximal phalanx of fifth digit of hand" EXACT [FMA:37535]
synonym: "base of proximal phalanx of fifth finger" EXACT [FMA:37535]
synonym: "base of proximal phalanx of little finger" EXACT [FMA:37535]
xref: FMA:37535
xref: SCTID:263415004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004421 ! proximal epiphysis of phalanx of little finger
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004331 ! proximal phalanx of hand digit 5
relationship: part_of UBERON:0004331 ! proximal phalanx of hand digit 5

[Term]
id: UBERON:0004444
name: proximal epiphysis of distal phalanx of thumb
namespace: uberon
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 1 [Obol]." [OBOL:automatic]
synonym: "base of distal phalanx of thumb" EXACT [FMA:37493]
xref: FMA:37493
xref: SCTID:182008001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004417 ! proximal epiphysis of phalanx of thumb
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004337 ! distal phalanx of hand digit 1
relationship: part_of UBERON:0004337 ! distal phalanx of hand digit 1

[Term]
id: UBERON:0004445
name: proximal epiphysis of proximal phalanx of thumb
namespace: uberon
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 1 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of thumb" EXACT [FMA:37490]
synonym: "base of proximal phalanx of thumb" EXACT [FMA:37490]
xref: FMA:37490
xref: SCTID:181993001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004417 ! proximal epiphysis of phalanx of thumb
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004338 ! proximal phalanx of hand digit 1
relationship: part_of UBERON:0004338 ! proximal phalanx of hand digit 1

[Term]
id: UBERON:0004446
name: epiphysis of phalanx
namespace: uberon
def: "An epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
xref: SCTID:280033007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
relationship: part_of UBERON:0003221 ! phalanx

[Term]
id: UBERON:0004447
name: proximal epiphysis of phalanx
namespace: uberon
def: "A proximal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004446 ! epiphysis of phalanx
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
relationship: part_of UBERON:0003221 ! phalanx

[Term]
id: UBERON:0004448
name: distal epiphysis of phalanx
namespace: uberon
def: "A distal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004446 ! epiphysis of phalanx
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
relationship: part_of UBERON:0003221 ! phalanx

[Term]
id: UBERON:0004451
name: presacral vertebra
namespace: uberon
xref: MA:0002869
xref: XAO:0003077
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002412 ! vertebra
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0004452
name: carpal region
namespace: uberon
alt_id: UBERON:0001462
def: "A mesopodium that is part of a hand. Includes as parts the carpal skeleton and associated tissues[cjm]. The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted]" [UBERON:cjm, Wikipedia:Wrist]
subset: uberon_slim
synonym: "carpal limb segment" EXACT []
synonym: "carpal segment" EXACT []
synonym: "carpus" RELATED INCONSISTENT []
synonym: "fore basipodium" EXACT [MA:th]
synonym: "fore mesopodium" EXACT [MA:th]
synonym: "hand mesopodium" EXACT []
synonym: "regio carpalis" EXACT [FMA:24922, FMA:TA]
synonym: "wrist" EXACT [MA:0000039]
synonym: "wrist region" EXACT []
xref: EHDAA2:0000218
xref: EHDAA:5196
xref: EMAPA:19122
xref: FMA:24922
xref: GAID:59
xref: galen:Wrist
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png
xref: MA:0000039
xref: MESH:A.01.378.800.667.715
xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA
xref: SCTID:361289009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006716 ! mesopodium region
is_a: UBERON:0008785 {source="FMA"} ! upper limb segment
intersection_of: UBERON:0006716 ! mesopodium region
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0004453
name: metacarpus region
namespace: uberon
comment: Editor notes: Note that along with FMA we treat this as a limb segment rather than a purely skeletal element. AO notes: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton
synonym: "distal segment of hand proper" EXACT [FMA:24925]
synonym: "metacarpal part of hand" EXACT [FMA:24925]
synonym: "metacarpal region" EXACT [FMA:24925]
xref: FMA:24925
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png
xref: MA:0000042
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005451 {source="FMA"} ! segment of hand
is_a: UBERON:0009877 ! metapodium region
intersection_of: UBERON:0009877 ! metapodium region
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0004454
name: tarsal region
namespace: uberon
alt_id: UBERON:0002388
def: "mesopodial segment of the foot, including the tarsal skeleton and associated tissues." [UBERON:cjm, Wikipedia:Ankle]
comment: note that this term refers to the limb segment. See also: tarsal bones and tarsal skeleton. AO notes: MA has both tarsus (part of foot, has tarsal bone) and ankle (part of hindlimb, has joint, nerve, skin).
subset: uberon_slim
synonym: "ankle" EXACT [MA:0000043]
synonym: "ankle region" EXACT []
synonym: "hind basipodium" RELATED [MA:th]
synonym: "hind mesopodium" RELATED [MA:th]
synonym: "hock" RELATED []
synonym: "tarsal limb segment" EXACT []
xref: EFO:0001409
xref: EMAPA:19133
xref: FMA:9665
xref: GAID:41
xref: galen:Ankle
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000043
xref: MESH:A.01.378.610.250.149
xref: MESH:A.13.473.821
xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA
xref: SCTID:361292008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006716 ! mesopodium region
is_a: UBERON:0008784 ! lower limb segment
intersection_of: UBERON:0006716 ! mesopodium region
intersection_of: part_of UBERON:0002387 ! foot
disjoint_from: UBERON:0004772 ! eyelid tarsus
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0004456
name: entire sense organ system
namespace: uberon
def: "Sum of all sensory systems in an organism." []
comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs
subset: uberon_slim
synonym: "sense organ system" EXACT [FMA:78499]
xref: FMA:78499
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
relationship: overlaps UBERON:0001016 ! nervous system

[Term]
id: UBERON:0004457
name: cavity lining
namespace: uberon
xref: MA:0002448
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004458 ! body cavity or lining
is_a: UBERON:0004923 ! organ component layer

[Term]
id: UBERON:0004458
name: body cavity or lining
namespace: uberon
xref: EMAPA:16060
xref: MA:0000005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001062 ! anatomical entity
union_of: UBERON:0002323 ! body cavity
union_of: UBERON:0004457 ! cavity lining

[Term]
id: UBERON:0004461
name: musculature of head
namespace: uberon
def: "A musculature that is part of a head [Obol]." [OBOL:automatic]
synonym: "head musculature" EXACT [FMA:71287]
synonym: "muscle group of head" EXACT [FMA:71287]
synonym: "muscles of head" EXACT [FMA:71287]
synonym: "musculi capitis" EXACT [FMA:71287, FMA:TA]
xref: FMA:71287
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008229 ! craniocervical region musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0004462
name: musculature of body wall
namespace: uberon
def: "A musculature that is part of a body wall [Obol]." [OBOL:automatic]
synonym: "body wall musculature" EXACT [FMA:86931]
xref: FMA:86931
xref: WBbt:0005813
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000309 ! body wall
relationship: part_of UBERON:0000309 ! body wall

[Term]
id: UBERON:0004463
name: musculature of hindlimb stylopod
namespace: uberon
def: "A musculature that is part of a hindlimb stylopod (upper leg / thigh)[Obol]." [OBOL:automatic]
synonym: "muscle group of thigh" EXACT [FMA:50208]
synonym: "musculature of thigh" EXACT [FMA:50208]
synonym: "set of muscles of thigh" EXACT [FMA:50208]
synonym: "thigh musculature" EXACT [FMA:50208]
xref: FMA:50208
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004466 ! musculature of leg
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0004464
name: musculature of thorax
namespace: uberon
def: "A musculature that is part of a thorax [Obol]." [OBOL:automatic]
comment: note BTO and FMA do not mean precisely the same thing here
synonym: "muscle group of thorax" EXACT [FMA:71293]
synonym: "muscles of thorax" EXACT [FMA:71293]
synonym: "musculi thoracis" EXACT [FMA:71293, FMA:TA]
synonym: "thoracic musculature" EXACT [FMA:71293]
xref: BTO:0000508
xref: FMA:71293
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0004465
name: musculature of neck
namespace: uberon
def: "A musculature that is part of a neck [Obol]." [OBOL:automatic]
synonym: "cervical muscles" EXACT [AAO:0000091]
synonym: "muscle group of neck" EXACT [FMA:71290]
synonym: "muscles of neck" EXACT [FMA:71290]
synonym: "musculi cervicis" EXACT [FMA:71290, FMA:TA]
synonym: "musculi colli" EXACT [FMA:71290, FMA:TA]
synonym: "neck musculature" EXACT [FMA:71290]
xref: AAO:0000091
xref: FMA:71290
xref: MESH:A.02.633.567.650
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008229 ! craniocervical region musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck

[Term]
id: UBERON:0004466
name: musculature of leg
namespace: uberon
alt_id: UBERON:0005632
def: "A musculature that is part of a lower leg or upper leg [Obol]." [OBOL:automatic]
comment: see notes on UBERON:0000978 for possible confusion over the term 'leg'. This class represents the class-union of upper leg musculature and lower leg musculature (and thus may not mean precisely the same thing as the EHDAA2 class)
synonym: "leg muscle system" EXACT [EHDAA2:0000973]
xref: EHDAA2:0000973
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004482 ! musculature of lower limb
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0004467
name: musculature of pharynx
namespace: uberon
def: "A musculature that is part of a pharynx [Obol]." [OBOL:automatic]
subset: vertebrate_core
xref: FMA:264609
xref: TAO:0001307
xref: ZFA:0001307
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0004468
name: set of muscles of vertebral column
namespace: uberon
def: "A musculature that is part of a vertebral column [Obol]." [OBOL:automatic]
synonym: "muscle group of vertebral column" EXACT [FMA:33061]
xref: FMA:33061
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004469 ! musculature of back
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0004469
name: musculature of back
namespace: uberon
def: "A musculature that is part of a back [Obol]." [OBOL:automatic]
synonym: "muscle group of back" EXACT [FMA:71291]
synonym: "muscles of back" EXACT [FMA:71291]
synonym: "musculi dorsi" EXACT [FMA:71291, FMA:TA]
xref: FMA:71291
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0004470
name: musculature of pelvic girdle
namespace: uberon
alt_id: UBERON:0005633
def: "A musculature that is part of a pelvic girdle [Obol]." [OBOL:automatic]
synonym: "muscle group of pelvic girdle" EXACT [FMA:50205]
synonym: "pelvic girdle muscle system" EXACT [EHDAA2:0001429]
synonym: "pelvic girdle muscles" EXACT [AAO:0000427]
synonym: "pelvic girdle musculature" EXACT [FMA:50205]
xref: AAO:0000427
xref: EHDAA2:0001429
xref: FMA:50205
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0001271 ! pelvic girdle region

[Term]
id: UBERON:0004471
name: musculature of pectoral girdle
namespace: uberon
def: "A musculature that is part of a pectoral girdle [Obol]." [OBOL:automatic]
synonym: "muscle group of pectoral girdle" EXACT [FMA:33519]
synonym: "pectoral girdle muscles" EXACT [AAO:0000423]
synonym: "pectoral girdle musculature" EXACT [FMA:33519]
xref: AAO:0000423
xref: FMA:33519
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region

[Term]
id: UBERON:0004472
name: musculature of chest
namespace: uberon
def: "A musculature that is part of a chest [Obol]." [OBOL:automatic]
synonym: "chest musculature" EXACT [FMA:74779]
xref: FMA:74779
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004464 ! musculature of thorax
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest

[Term]
id: UBERON:0004473
name: musculature of face
namespace: uberon
comment: originally created to reflect the distinction drawn in FMA between a facial muscle and the entire musculature of the face. However, naming both does not serve any particular purpose
synonym: "entire facial musculature" EXACT [UBERON:cjm]
synonym: "facial muscles" EXACT [FMA:71288]
synonym: "muscle group of face" EXACT [FMA:71288]
synonym: "musculi faciei" EXACT [FMA:71288, FMA:TA]
xref: FMA:71288
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004461 ! musculature of head
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:0004474
name: musculature of arm
namespace: uberon
def: "A musculature that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm musculature" EXACT [FMA:50202]
synonym: "muscle group of arm" EXACT [FMA:50202]
xref: FMA:50202
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004481 ! musculature of upper limb
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm

[Term]
id: UBERON:0004475
name: musculature of hip
namespace: uberon
def: "A musculature that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip musculature" EXACT [FMA:50227]
synonym: "muscle group of hip" EXACT [FMA:50227]
xref: FMA:50227
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004470 ! musculature of pelvic girdle
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip

[Term]
id: UBERON:0004476
name: musculature of shoulder
namespace: uberon
def: "A musculature that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "muscle group of shoulder" EXACT [FMA:50220]
xref: FMA:50220
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004471 ! musculature of pectoral girdle
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder

[Term]
id: UBERON:0004477
name: Set of muscles of tongue
namespace: uberon
def: "A musculature that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "muscle group of tongue" EXACT [FMA:71289]
synonym: "muscles of tongue" EXACT [FMA:71289]
synonym: "musculi linguae" EXACT [FMA:71289, FMA:TA]
xref: FMA:71289
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004461 ! musculature of head
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0004478
name: musculature of larynx
namespace: uberon
def: "A musculature that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "laryngeal muscles" EXACT [FMA:46616]
synonym: "laryngeal muscles set" EXACT [FMA:46616]
synonym: "muscle group of larynx" EXACT [FMA:46616]
xref: FMA:264611
xref: FMA:46616
xref: MESH:A.02.633.567.500
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx

[Term]
id: UBERON:0004479
name: musculature of trunk
namespace: uberon
def: "A musculature that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "muscle group of trunk" EXACT [FMA:50187]
xref: EFO:0003531
xref: FMA:50187
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0004480
name: musculature of limb
namespace: uberon
alt_id: UBERON:0005635
def: "A musculature that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb muscle system" EXACT [EHDAA2:0000995]
synonym: "limb musculature" EXACT [FMA:50188]
synonym: "muscle group of limb" EXACT [FMA:50188]
xref: EHDAA2:0000995
xref: FMA:50188
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007271 ! limb/fin musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0004481
name: musculature of upper limb
namespace: uberon
def: "A musculature that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "muscles of upper limb" EXACT [FMA:71296]
synonym: "musculi membri superioris" EXACT [FMA:71296, FMA:TA]
synonym: "upper limb musculature" EXACT [FMA:71296]
xref: FMA:71296
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004480 ! musculature of limb
is_a: UBERON:0007269 ! pectoral appendage musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0004482
name: musculature of lower limb
namespace: uberon
def: "A musculature that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "muscles of lower limb" EXACT [FMA:71297]
synonym: "musculi membri inferioris" EXACT [FMA:71297, FMA:TA]
xref: FMA:71297
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004480 ! musculature of limb
is_a: UBERON:0007270 ! pelvic appendage musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0004483
name: Set of iliocostalis muscles
namespace: uberon
def: "A musculature that is part of a iliocostalis [Obol]." [OBOL:automatic]
synonym: "iliocostalis muscle group" EXACT [FMA:33062]
synonym: "iliocostalis muscles set" EXACT [FMA:33062]
xref: FMA:33062
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002251 ! iliocostalis
relationship: part_of UBERON:0002251 ! iliocostalis

[Term]
id: UBERON:0004484
name: Set of splenius muscles
namespace: uberon
def: "A musculature that is part of a splenius [Obol]." [OBOL:automatic]
synonym: "splenius muscle group" EXACT [FMA:22596]
synonym: "splenius muscles set" EXACT [FMA:22596]
xref: FMA:22596
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002252 ! splenius
relationship: part_of UBERON:0002252 ! splenius

[Term]
id: UBERON:0004485
name: Set of muscles of pelvis
namespace: uberon
def: "A musculature that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "muscle group of pelvis" EXACT [FMA:50248]
xref: FMA:50248
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis

[Term]
id: UBERON:0004486
name: musculature of perineum
namespace: uberon
def: "A musculature that is part of a perineum [Obol]." [OBOL:automatic]
synonym: "musculi perinei" EXACT [FMA:71295, FMA:TA]
synonym: "perineal muscles" EXACT [FMA:71295]
synonym: "perineal muscles set" EXACT [FMA:71295]
xref: EMAPA:18923
xref: FMA:71295
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002356 ! perineum
relationship: part_of UBERON:0002356 ! perineum

[Term]
id: UBERON:0004487
name: musculature of forearm
namespace: uberon
def: "A musculature that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "muscle group of forearm" EXACT [FMA:39089]
xref: FMA:39089
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004474 ! musculature of arm
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod

[Term]
id: UBERON:0004488
name: musculature of foot
namespace: uberon
def: "A musculature that is part of a foot [Obol]." [OBOL:automatic]
synonym: "foot musculature" EXACT [FMA:50214]
synonym: "muscle group of foot" EXACT [FMA:50214]
xref: FMA:50214
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004482 ! musculature of lower limb
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0004489
name: musculature of hand
namespace: uberon
def: "A musculature that is part of a hand [Obol]." [OBOL:automatic]
synonym: "hand musculature" EXACT [FMA:42368]
synonym: "muscle group of hand" EXACT [FMA:42368]
xref: FMA:42368
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004481 ! musculature of upper limb
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0004490
name: cardiac muscle tissue of atrium
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of an atrium [Obol]." [OBOL:automatic]
xref: FMA:7283
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium

[Term]
id: UBERON:0004491
name: cardiac muscle tissue of interatrial septum
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a interatrial septum [Obol]." [OBOL:automatic]
xref: FMA:84083
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002085 ! interatrial septum
relationship: part_of UBERON:0002085 ! interatrial septum

[Term]
id: UBERON:0004492
name: cardiac muscle tissue of cardiac septum
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a cardiac septum [Obol]." [OBOL:automatic]
xref: FMA:226279
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002099 ! cardiac septum
relationship: part_of UBERON:0002099 ! cardiac septum

[Term]
id: UBERON:0004493
name: cardiac muscle tissue of myocardium
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a myocardium [Obol]." [OBOL:automatic]
xref: FMA:261726
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002349 ! myocardium

[Term]
id: UBERON:0004494
name: cardiac muscle tissue of papillary muscle
namespace: uberon
def: "A portion of cardiac muscle tissue that is part of a papillary muscle [Obol]." [OBOL:automatic]
xref: FMA:84425
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002494 ! papillary muscle
relationship: part_of UBERON:0002494 ! papillary muscle

[Term]
id: UBERON:0004495
name: skeletal muscle tissue of diaphragm
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a diaphragm [Obol]." [OBOL:automatic]
xref: FMA:261898
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003898 ! skeletal muscle of trunk
is_a: UBERON:0004830 ! respiratory system skeletal muscle
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001103 ! diaphragm
relationship: part_of UBERON:0001103 ! diaphragm

[Term]
id: UBERON:0004496
name: skeletal muscle tissue of iliacus
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a iliacus [Obol]." [OBOL:automatic]
xref: FMA:261992
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003271 ! skeletal muscle of pelvic girdle
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001369 ! iliacus
relationship: part_of UBERON:0001369 ! iliacus

[Term]
id: UBERON:0004497
name: skeletal muscle tissue of gluteus maximus
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a gluteus maximus [Obol]." [OBOL:automatic]
xref: FMA:261980
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003271 ! skeletal muscle of pelvic girdle
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001370 ! gluteus maximus
relationship: part_of UBERON:0001370 ! gluteus maximus

[Term]
id: UBERON:0004498
name: skeletal muscle tissue of quadriceps femoris
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a quadriceps femoris [Obol]." [OBOL:automatic]
xref: FMA:261998
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001377 ! quadriceps femoris
relationship: part_of UBERON:0001377 ! quadriceps femoris

[Term]
id: UBERON:0004499
name: skeletal muscle tissue of tibialis anterior
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a tibialis anterior [Obol]." [OBOL:automatic]
xref: FMA:262004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003270 ! skeletal muscle of leg
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001385 ! tibialis anterior
relationship: part_of UBERON:0001385 ! tibialis anterior

[Term]
id: UBERON:0004500
name: skeletal muscle tissue of deltoid
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a deltoid [Obol]." [OBOL:automatic]
xref: FMA:261732
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001476 ! deltoid
relationship: part_of UBERON:0001476 ! deltoid

[Term]
id: UBERON:0004501
name: skeletal muscle tissue of teres major
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a teres major [Obol]." [OBOL:automatic]
xref: FMA:261962
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001478 ! teres major muscle
relationship: part_of UBERON:0001478 ! teres major muscle

[Term]
id: UBERON:0004502
name: skeletal muscle tissue of biceps brachii
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a biceps brachii [Obol]." [OBOL:automatic]
xref: FMA:261974
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003272 ! skeletal muscle of arm
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001507 ! biceps brachii
relationship: part_of UBERON:0001507 ! biceps brachii

[Term]
id: UBERON:0004503
name: skeletal muscle tissue of digastric
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a digastric [Obol]." [OBOL:automatic]
xref: FMA:261872
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003384 ! skeletal muscle of pharynx
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001562 ! digastric
relationship: part_of UBERON:0001562 ! digastric

[Term]
id: UBERON:0004504
name: skeletal muscle tissue of mylohyoid
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Obol]." [OBOL:automatic]
xref: FMA:261878
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003384 ! skeletal muscle of pharynx
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001564 ! mylohyoid
relationship: part_of UBERON:0001564 ! mylohyoid

[Term]
id: UBERON:0004505
name: skeletal muscle tissue of orbicularis oculi
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Obol]." [OBOL:automatic]
xref: FMA:261812
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003269 ! skeletal muscle of eye
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001578 ! orbicularis oculi
relationship: part_of UBERON:0001578 ! orbicularis oculi

[Term]
id: UBERON:0004506
name: skeletal muscle tissue of masseter
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a masseter [Obol]." [OBOL:automatic]
xref: FMA:261824
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003899 ! skeletal muscle of head
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001597 ! masseter muscle
relationship: part_of UBERON:0001597 ! masseter muscle

[Term]
id: UBERON:0004507
name: skeletal muscle tissue of temporalis
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a temporalis [Obol]." [OBOL:automatic]
xref: FMA:261740
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003899 ! skeletal muscle of head
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001598 ! temporalis muscle
relationship: part_of UBERON:0001598 ! temporalis muscle

[Term]
id: UBERON:0004508
name: skeletal muscle tissue of levator palpebrae superioris
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Obol]." [OBOL:automatic]
xref: FMA:261782
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003269 ! skeletal muscle of eye
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001604 ! levator palpebrae superioris
relationship: part_of UBERON:0001604 ! levator palpebrae superioris

[Term]
id: UBERON:0004509
name: skeletal muscle tissue of trapezius
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a trapezius [Obol]." [OBOL:automatic]
xref: FMA:261938
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002380 ! trapezius
relationship: part_of UBERON:0002380 ! trapezius

[Term]
id: UBERON:0004510
name: skeletal muscle tissue of pectoralis major
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a pectoralis major [Obol]." [OBOL:automatic]
xref: FMA:261968
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003898 ! skeletal muscle of trunk
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002381 ! pectoralis major
relationship: part_of UBERON:0002381 ! pectoralis major

[Term]
id: UBERON:0004511
name: skeletal muscle tissue of rectus abdominis
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a rectus abdominis [Obol]." [OBOL:automatic]
xref: FMA:261924
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003898 ! skeletal muscle of trunk
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002382 ! rectus abdominis
relationship: part_of UBERON:0002382 ! rectus abdominis

[Term]
id: UBERON:0004512
name: skeletal muscle tissue of supraspinatus
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a supraspinatus [Obol]." [OBOL:automatic]
xref: FMA:261956
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002383 ! supraspinatus
relationship: part_of UBERON:0002383 ! supraspinatus

[Term]
id: UBERON:0004513
name: skeletal muscle tissue of internal intercostal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Obol]." [OBOL:automatic]
xref: FMA:261888
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003898 ! skeletal muscle of trunk
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002403 ! internal intercostal muscle
relationship: part_of UBERON:0002403 ! internal intercostal muscle

[Term]
id: UBERON:0004514
name: skeletal muscle tissue of transversus thoracis
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a transversus thoracis [Obol]." [OBOL:automatic]
xref: FMA:261892
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003898 ! skeletal muscle of trunk
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002404 ! transversus thoracis
relationship: part_of UBERON:0002404 ! transversus thoracis

[Term]
id: UBERON:0004515
name: smooth muscle tissue of bronchiole
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a bronchiole [Obol]." [OBOL:automatic]
synonym: "smooth muscle tissue of lobular bronchiole" EXACT [FMA:261081]
xref: FMA:261045
xref: FMA:261081
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004233 ! lower respiratory tract smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002186 ! bronchiole

[Term]
id: UBERON:0004516
name: smooth muscle tissue of terminal bronchiole
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Obol]." [OBOL:automatic]
xref: FMA:261051
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
relationship: part_of UBERON:0002187 ! terminal bronchiole

[Term]
id: UBERON:0004517
name: smooth muscle tissue of respiratory bronchiole
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Obol]." [OBOL:automatic]
xref: FMA:261055
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
relationship: part_of UBERON:0002188 ! respiratory bronchiole

[Term]
id: UBERON:0004518
name: muscle of vertebral column
namespace: uberon
def: "A muscle organ that is part of a vertebral column [Obol]." [OBOL:automatic]
synonym: "vertebral column muscle" EXACT [FMA:22594]
xref: FMA:22594
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002324 ! muscle of back
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0004519
name: muscle of anal triangle
namespace: uberon
def: "A muscle organ that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal triangle muscle" EXACT [FMA:77304]
xref: FMA:77304
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002379 ! perineal muscle
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004520
name: striated muscle tissue of prostate
namespace: uberon
def: "A portion of striated muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic]
xref: FMA:45716
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0008715 ! muscle tissue of prostate
intersection_of: UBERON:0002036 ! striated muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland

[Term]
id: UBERON:0004521
name: vasculature of muscle organ
namespace: uberon
def: "A vasculature that is part of a muscle organ [Obol]." [OBOL:automatic]
synonym: "muscular organ vasculature" EXACT [FMA:87123]
xref: FMA:87123
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004522 ! vasculature of musculoskeletal system
is_a: UBERON:0006876 ! vasculature of organ
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0004522
name: vasculature of musculoskeletal system
namespace: uberon
def: "A vasculature that is part of a musculoskeletal system [Obol]." [OBOL:automatic]
xref: FMA:239607
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002204 ! musculoskeletal system
relationship: part_of UBERON:0002204 ! musculoskeletal system

[Term]
id: UBERON:0004525
name: cardiac muscle tissue of trabecula carnea of right ventricle
namespace: uberon
def: "A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic]
xref: FMA:84429
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003381 ! cardiac muscle of right ventricle
is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle

[Term]
id: UBERON:0004526
name: cardiac muscle tissue of trabecula carnea of left ventricle
namespace: uberon
def: "A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic]
xref: FMA:84430
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003382 ! cardiac muscle of left ventricle
is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle

[Term]
id: UBERON:0004527
name: alveolar process of maxilla
namespace: uberon
alt_id: UBERON:0001696
def: "thickened ridge of bone that contains the tooth sockets on bones that bear teeth. In humans, the tooth-bearing bones are the maxilla and the mandible. The mineral content of alveolar bone is mostly hydroxyapatite, which is also found in enamel as the main inorganic substance[WP]." [Wikipedia:Alveolar_process_of_maxilla]
synonym: "alveolar margin of maxilla" EXACT []
synonym: "alveolar part of maxilla" EXACT []
synonym: "alveolar ridge of maxilla" EXACT []
synonym: "lower alveolar ridge" EXACT []
synonym: "maxilla alveolar process" EXACT []
synonym: "posterior alveolar ridge" EXACT []
synonym: "processus alveolaris (maxilla)" EXACT []
xref: FMA:52897
xref: MA:0001492
xref: SCTID:245795005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004103 ! alveolar ridge
intersection_of: UBERON:0004103 ! alveolar ridge
intersection_of: part_of UBERON:0002397 ! maxilla
relationship: part_of UBERON:0002397 ! maxilla

[Term]
id: UBERON:0004528
name: alveolar ridge of mandible
namespace: uberon
def: "The alveolar part of mandible is the part of the mandible, adjacent to the teeth, containing the dental alveolus. [WP,unvetted]." [Wikipedia:Alveolar_part_of_mandible]
synonym: "alveolar margin of mandible" EXACT []
synonym: "alveolar part of mandible" EXACT []
synonym: "alveolar process of mandible" EXACT [FMA:52832]
synonym: "anterior alveolar ridge" EXACT []
synonym: "pars alveolaris (mandibula)" EXACT [FMA:52832]
synonym: "upper alveolar ridge" EXACT []
xref: FMA:52832
xref: SCTID:245791001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004103 ! alveolar ridge
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0004103 ! alveolar ridge
intersection_of: part_of UBERON:0001684 ! mandible
relationship: part_of UBERON:0001684 ! mandible

[Term]
id: UBERON:0004529
name: anatomical projection
namespace: uberon
def: "a projection or outgrowth of tissue from a larger body or organ." [Wikipedia:Process_(anatomy)]
synonym: "anatomical process" BROAD []
synonym: "organ process" NARROW []
synonym: "process" BROAD []
synonym: "process of organ" NARROW []
synonym: "projection" EXACT []
xref: AAO:0010278
xref: FMA:67601
xref: HAO:0000822
xref: XAO:0004020
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment

[Term]
id: UBERON:0004530
name: bony projection
namespace: uberon
def: "Portion of connective tissue that is an extension of a bone." []
subset: vertebrate_core
synonym: "bone process" BROAD []
synonym: "process" BROAD [VAO:0000180]
synonym: "projection of bone" EXACT []
xref: :bony projection
xref: FMA:75433
xref: TAO:0001834
xref: VAO:0000180
xref: ZFA:0001637
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004529 ! anatomical projection
intersection_of: UBERON:0004529 ! anatomical projection
intersection_of: part_of UBERON:0001474 ! bone
relationship: has_part UBERON:0002481 ! bone tissue
relationship: part_of UBERON:0001474 ! bone

[Term]
id: UBERON:0004535
name: cardiovascular system
namespace: uberon
def: "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088]
subset: uberon_slim
subset: vertebrate_core
synonym: "CV system" RELATED [BTO:0000088]
synonym: "Herz und Gefaesssystem" RELATED [BTO:0000088]
xref: AAO:0011001
xref: BILA:0000016
xref: BTO:0000088
xref: EFO:0000791
xref: EHDAA2:0000216
xref: EHDAA:394
xref: EMAPA:16104
xref: EMAPA:16370
xref: EV:0100017
xref: FMA:7161
xref: GAID:467
xref: MA:0000010
xref: MAT:0000016
xref: MESH:A.07
xref: MIAA:0000016
xref: ncithesaurus:Cardiovascular_System
xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA
xref: SCTID:278198007
xref: TAO:0000010
xref: VHOG:0000302
xref: XAO:0000100
xref: XAO:0001010
xref: ZFA:0000010
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
intersection_of: UBERON:0000467 ! anatomical system
intersection_of: has_part UBERON:0000948 ! heart
intersection_of: has_part UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001009 ! circulatory system
relationship: has_part UBERON:0000948 ! heart
relationship: has_part UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001009 ! circulatory system

[Term]
id: UBERON:0004536
name: lymph vasculature
namespace: uberon
def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105]
subset: vertebrate_core
synonym: "lymphatic trunks and ducts" EXACT [FMA:63815]
synonym: "lymphatic vasculature" EXACT []
synonym: "lymphatic vessel network" EXACT []
synonym: "lymphatic vessels set" EXACT [FMA:63815]
synonym: "set of lymphatic vessels" EXACT []
synonym: "trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA]
xref: FMA:63815
xref: TAO:0005105
xref: ZFA:0005105
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: has_part UBERON:0002391 ! lymph
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0002465 ! lymphoid system

[Term]
id: UBERON:0004537
name: blood vasculature
namespace: uberon
def: "a vascular network consisting of blood vessels" [UBERON:cjm]
synonym: "blood vascular network" EXACT []
synonym: "set of blood vessels" EXACT []
xref: TAO:0001079
xref: ZFA:0001079
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: composed_primarily_of UBERON:0000178 ! blood
relationship: composed_primarily_of UBERON:0000178 ! blood
relationship: part_of UBERON:0004535 ! cardiovascular system

[Term]
id: UBERON:0004546
name: cribriform plate
namespace: uberon
def: "The cribriform plate of the ethmoid bone (horizontal lamina) is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. Projecting upward from the middle line of this plate is a thick, smooth, triangular process, the crista galli, so called from its resemblance to a cock's comb. The long thin posterior border of the crista galli serves for the attachment of the falx cerebri. Its anterior border, short and thick, articulates with the frontal bone, and presents two small projecting alæ, which are received into corresponding depressions in the frontal bone and complete the foramen cecum. Its sides are smooth, and sometimes bulging from the presence of a small air sinus in the interior. On either side of the crista galli, the cribriform plate is narrow and deeply grooved; it supports the olfactory bulb and is perforated by foramina for the passage of the olfactory nerves. The foramina in the middle of the groove are small and transmit the nerves to the roof of the nasal cavity; those at the medial and lateral parts of the groove are larger—the former transmit the nerves to the upper part of the nasal septum, the latter those to the superior nasal concha. At the front part of the cribriform plate, on either side of the crista galli, is a small fissure which is occupied by a process of dura mater. Lateral to this fissure is a notch or foramen which transmits the nasociliary nerve; from this notch a groove extends backward to the anterior ethmoidal foramen. [WP,unvetted]." [Wikipedia:Cribriform_plate]
synonym: "cribiform plate of ethmoid bone" EXACT [Wikipedia:Cribriform_plate]
synonym: "ethmoid bone lamina cribrosa" RELATED [BTO:0004141]
synonym: "lamina cribrosa of ethmoid bone" RELATED [BTO:0004141]
xref: BTO:0004141
xref: EMAPA:19201
xref: FMA:52890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray149.png/200px-Gray149.png
xref: MA:0002898
xref: SCTID:282814006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001679 {source="MA"} ! ethmoid

[Term]
id: UBERON:0004550
name: gastroesophageal sphincter
namespace: uberon
def: "A sphincter muscle that is part of a cardia of stomach [Obol]." [OBOL:automatic]
comment: todo - split? check FMA:63048
synonym: "cardiac sphincter" RELATED [MA:0002951]
synonym: "gastroesophageal sphincter" EXACT [FMA:14915]
synonym: "inferior esophageal sphincter" EXACT [FMA:14915]
synonym: "lower esophageal sphincter" RELATED [MA:0002951]
xref: FMA:14915
xref: galen:LowerEsophagealSphincter
xref: MA:0002951
xref: ncithesaurus:Lower_Esophageal_Sphincter
xref: SCTID:267809009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004590 ! sphincter muscle
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach

[Term]
id: UBERON:0004571
name: systemic arterial system
namespace: uberon
def: "the part of the cardiovascular system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart." [Wikipedia:Systemic_circulation#Arteries]
synonym: "Systemic arterial circulatory system" EXACT [FMA:45623]
xref: FMA:45623
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007798 {source="MA-inferred"} ! vascular system
relationship: part_of UBERON:0004572 ! arterial system

[Term]
id: UBERON:0004572
name: arterial system
namespace: uberon
def: "The arterial system is the higher-pressure portion of the circulatory system." [BTO:0004690]
xref: BTO:0004690
xref: EHDAA2:0000143
xref: EHDAA:396
xref: EMAPA:16201
xref: EMAPA:16371
xref: MA:0002719
xref: SCTID:362030008
xref: VHOG:0000273
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007798 {source="MA"} ! vascular system
relationship: part_of UBERON:0004535 {source="EHDAA2"} ! cardiovascular system

[Term]
id: UBERON:0004573
name: systemic artery
namespace: uberon
def: "Systemic arteries are the arteries of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart." [Wikipedia:Artery#Systemic_arteries]
synonym: "systemic arterial subtree" EXACT [FMA:66464]
xref: FMA:66464
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001637 ! artery
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0004571 ! systemic arterial system
relationship: part_of UBERON:0004571 ! systemic arterial system

[Term]
id: UBERON:0004582
name: venous system
namespace: uberon
synonym: "vein system" EXACT []
xref: BTO:0004692
xref: EHDAA2:0002171
xref: EHDAA:486
xref: EMAPA:16240
xref: MA:0002720
xref: ncithesaurus:Venous_System
xref: SCTID:362060003
xref: VHOG:0000277
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007798 {source="MA"} ! vascular system

[Term]
id: UBERON:0004590
name: sphincter muscle
namespace: uberon
def: "a structure, usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning." [Wikipedia:Sphincter]
comment: FMA class is not a subtype of muscle
synonym: "circular muscle" RELATED []
synonym: "sphincter" EXACT []
xref: FMA:75004
xref: ncithesaurus:Sphincter
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0004601
name: rib 1
namespace: uberon
def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the Serratus anterior. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Costa prima (I)" EXACT [FMA:7597]
synonym: "first rib" EXACT [FMA:7597]
xref: FMA:7597
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray124.png/200px-Gray124.png
xref: MA:0001401
xref: ncithesaurus:Rib_1
xref: SCTID:182016005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0004602
name: rib 2
namespace: uberon
def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the Serratus anterior; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Costa secunda (II)" EXACT [FMA:7620]
synonym: "second rib" EXACT [FMA:7620]
xref: FMA:7620
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray125.png/200px-Gray125.png
xref: MA:0001402
xref: ncithesaurus:Rib_2
xref: SCTID:244656007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0004603
name: rib 3
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "third rib" EXACT [FMA:7638]
xref: FMA:7638
xref: MA:0001403
xref: ncithesaurus:Rib_3
xref: SCTID:244658008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0004604
name: rib 4
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fourth rib" EXACT [FMA:7749]
xref: FMA:7749
xref: MA:0001404
xref: ncithesaurus:Rib_4
xref: SCTID:244659000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0004605
name: rib 5
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fifth rib" EXACT [FMA:7776]
xref: FMA:7776
xref: MA:0001405
xref: ncithesaurus:Rib_5
xref: SCTID:244660005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0004606
name: rib 6
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "sixth rib" EXACT [FMA:8147]
xref: FMA:8147
xref: MA:0001406
xref: ncithesaurus:Rib_6
xref: SCTID:244661009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "6" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0004607
name: rib 7
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "seventh rib" EXACT [FMA:7830]
xref: FMA:7830
xref: MA:0001407
xref: ncithesaurus:Rib_7
xref: SCTID:244662002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "7" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0004608
name: rib 9
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "ninth rib" EXACT [FMA:8337]
xref: FMA:8337
xref: MA:0001409
xref: ncithesaurus:Rib_9
xref: SCTID:244664001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "9" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002238 ! false rib

[Term]
id: UBERON:0004609
name: rib 10
namespace: uberon
def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "tenth rib" EXACT [FMA:8418]
xref: FMA:8418
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray126.png/200px-Gray126.png
xref: MA:0001410
xref: ncithesaurus:Rib_10
xref: SCTID:244665000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "10" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002238 ! false rib

[Term]
id: UBERON:0004610
name: rib 11
namespace: uberon
def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "eleventh rib" EXACT [FMA:8499]
xref: FMA:8499
xref: MA:0001411
xref: ncithesaurus:Rib_11
xref: SCTID:244666004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "11" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002239 ! floating rib

[Term]
id: UBERON:0004611
name: rib 12
namespace: uberon
def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "twelfth rib" EXACT [FMA:8515]
xref: FMA:8515
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray128.png/200px-Gray128.png
xref: MA:0001412
xref: ncithesaurus:Rib_12
xref: SCTID:244667008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "12" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002239 ! floating rib

[Term]
id: UBERON:0004612
name: mammalian cervical vertebra 3
namespace: uberon
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C3 vertebra" EXACT [FMA:12521]
synonym: "cervical vertebra 3" EXACT [MA:0001423]
synonym: "third cervical vertebra" EXACT [FMA:12521]
xref: EMAPA:19433
xref: FMA:12521
xref: MA:0001423
xref: ncithesaurus:C3_Vertebra
xref: SCTID:181823007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "vertebra_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0004613
name: mammalian cervical vertebra 4
namespace: uberon
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C4 vertebra" EXACT [FMA:12522]
synonym: "cervical vertebra 4" EXACT [MA:0001424]
synonym: "fourth cervical vertebra" EXACT [FMA:12522]
xref: EMAPA:19434
xref: FMA:12522
xref: MA:0001424
xref: ncithesaurus:C4_Vertebra
xref: SCTID:181824001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "vertebra_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0004614
name: mammalian cervical vertebra 5
namespace: uberon
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C5 vertebra" EXACT [FMA:12523]
synonym: "fifth cervical vertebra" EXACT [FMA:12523]
xref: EMAPA:19435
xref: FMA:12523
xref: MA:0001425
xref: ncithesaurus:C5_Vertebra
xref: SCTID:181825000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "vertebra_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0004615
name: mammalian cervical vertebra 6
namespace: uberon
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C6 vertebra" EXACT [FMA:12524]
synonym: "cervical vertebra 6" EXACT [MA:0001426]
synonym: "sixth cervical vertebra" EXACT [FMA:12524]
xref: EMAPA:19466
xref: FMA:12524
xref: MA:0001426
xref: ncithesaurus:C6_Vertebra
xref: SCTID:181826004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "vertebra_number" "6" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0004616
name: mammalian cervical vertebra 7
namespace: uberon
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C7 vertebra" EXACT [FMA:12525]
synonym: "cervical vertebra 7" EXACT [MA:0001427]
synonym: "prominent vertebra" EXACT [FMA:12525]
synonym: "seventh cervical vertebra" EXACT [FMA:12525]
synonym: "vertebra prominens (CVII)" EXACT [FMA:12525]
xref: EMAPA:19467
xref: FMA:12525
xref: MA:0001427
xref: ncithesaurus:C7_Vertebra
xref: SCTID:181827008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "vertebra_number" "7" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0004617
name: lumbar vertebra 1
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "first lumbar vertebra" EXACT [FMA:13072]
synonym: "L1 vertebra" EXACT [FMA:13072]
xref: EMAPA:19472
xref: FMA:13072
xref: MA:0001428
xref: ncithesaurus:L1_Vertebra
xref: SCTID:181841004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0004618
name: lumbar vertebra 2
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "L2 vertebra" EXACT [FMA:13073]
synonym: "second lumbar vertebra" EXACT [FMA:13073]
xref: EMAPA:19570
xref: FMA:13073
xref: MA:0001429
xref: ncithesaurus:L2_Vertebra
xref: SCTID:181842006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0004619
name: lumbar vertebra 3
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "L3 vertebra" EXACT [FMA:13074]
synonym: "third lumbar vertebra" EXACT [FMA:13074]
xref: EMAPA:19571
xref: FMA:13074
xref: MA:0001430
xref: ncithesaurus:L3_Vertebra
xref: SCTID:181843001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0004620
name: lumbar vertebra 4
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fourth lumbar vertebra" EXACT [FMA:13075]
synonym: "L4 vertebra" EXACT [FMA:13075]
xref: EMAPA:19572
xref: FMA:13075
xref: MA:0001431
xref: ncithesaurus:L4_Vertebra
xref: SCTID:181844007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0004621
name: lumbar vertebra 5
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fifth lumbar vertebra" EXACT [FMA:13076]
synonym: "L5 vertebra" EXACT [FMA:13076]
xref: EMAPA:19573
xref: FMA:13076
xref: MA:0001432
xref: ncithesaurus:L5_Vertebra
xref: SCTID:181845008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0004622
name: sacral vertebra 1
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "First sacral segment" EXACT [FMA:13077]
synonym: "first sacral vertebra" EXACT [FMA:13077]
synonym: "First segment of sacrum" EXACT [FMA:13077]
synonym: "S1 vertebra" EXACT [FMA:13077]
xref: EMAPA:19588
xref: FMA:13077
xref: MA:0001434
xref: ncithesaurus:S1_Vertebra
xref: SCTID:181846009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001094 ! sacral vertebra

[Term]
id: UBERON:0004623
name: sacral vertebra 2
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "S2 vertebra" EXACT [FMA:13078]
synonym: "Second sacral segment" EXACT [FMA:13078]
synonym: "second sacral vertebra" EXACT [FMA:13078]
synonym: "Second segment of sacrum" EXACT [FMA:13078]
xref: EMAPA:19589
xref: FMA:13078
xref: MA:0001435
xref: ncithesaurus:S2_Vertebra
xref: SCTID:181847000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001094 ! sacral vertebra

[Term]
id: UBERON:0004624
name: sacral vertebra 3
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "S3 vertebra" EXACT [FMA:13079]
synonym: "Third sacral segment" EXACT [FMA:13079]
synonym: "third sacral vertebra" EXACT [FMA:13079]
synonym: "Third segment of sacrum" EXACT [FMA:13079]
xref: EMAPA:19590
xref: FMA:13079
xref: MA:0001436
xref: ncithesaurus:S3_Vertebra
xref: SCTID:181848005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001094 ! sacral vertebra

[Term]
id: UBERON:0004625
name: sacral vertebra 4
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Fourth sacral segment" EXACT [FMA:13080]
synonym: "fourth sacral vertebra" EXACT [FMA:13080]
synonym: "Fourth segment of sacrum" EXACT [FMA:13080]
synonym: "S4 vertebra" EXACT [FMA:13080]
xref: EMAPA:19591
xref: FMA:13080
xref: MA:0001437
xref: ncithesaurus:S4_Vertebra
xref: SCTID:181849002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001094 ! sacral vertebra

[Term]
id: UBERON:0004626
name: thoracic vertebra 1
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "First dorsal vertebra" EXACT [FMA:9165]
synonym: "first thoracic vertebra" EXACT [FMA:9165]
synonym: "T1 vertebra" EXACT [FMA:9165]
xref: EMAPA:19542
xref: FMA:9165
xref: MA:0001438
xref: ncithesaurus:T1_Vertebra
xref: SCTID:181828003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004627
name: thoracic vertebra 2
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Second dorsal vertebra" EXACT [FMA:9187]
synonym: "second thoracic vertebra" EXACT [FMA:9187]
synonym: "T2 vertebra" EXACT [FMA:9187]
xref: EMAPA:19543
xref: FMA:9187
xref: MA:0001439
xref: ncithesaurus:T2_Vertebra
xref: SCTID:181829006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004628
name: thoracic vertebra 3
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "T3 vertebra" EXACT [FMA:9209]
synonym: "Third dorsal vertebra" EXACT [FMA:9209]
synonym: "third thoracic vertebra" EXACT [FMA:9209]
xref: EMAPA:19544
xref: FMA:9209
xref: MA:0001440
xref: ncithesaurus:T3_Vertebra
xref: SCTID:181830001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004629
name: thoracic vertebra 4
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Fourth dorsal vertebra" EXACT [FMA:9248]
synonym: "fourth thoracic vertebra" EXACT [FMA:9248]
synonym: "T4 vertebra" EXACT [FMA:9248]
xref: EMAPA:19545
xref: FMA:9248
xref: MA:0001441
xref: ncithesaurus:T4_Vertebra
xref: SCTID:181831002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004630
name: thoracic vertebra 5
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Fifth dorsal vertebra" EXACT [FMA:9922]
synonym: "fifth thoracic vertebra" EXACT [FMA:9922]
synonym: "T5 vertebra" EXACT [FMA:9922]
xref: EMAPA:19546
xref: FMA:9922
xref: MA:0001442
xref: ncithesaurus:T5_Vertebra
xref: SCTID:181832009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004631
name: thoracic vertebra 6
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Sixth dorsal vertebra" EXACT [FMA:9945]
synonym: "sixth thoracic vertebra" EXACT [FMA:9945]
synonym: "T6 vertebra" EXACT [FMA:9945]
xref: EMAPA:19547
xref: FMA:9945
xref: MA:0001443
xref: ncithesaurus:T6_Vertebra
xref: SCTID:181834005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004632
name: thoracic vertebra 7
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Seventh dorsal vertebra" EXACT [FMA:9968]
synonym: "seventh thoracic vertebra" EXACT [FMA:9968]
synonym: "T7 vertebra" EXACT [FMA:9968]
xref: EMAPA:19548
xref: FMA:9968
xref: MA:0001444
xref: ncithesaurus:T7_Vertebra
xref: SCTID:181835006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004633
name: thoracic vertebra 9
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Ninth dorsal vertebra" EXACT [FMA:10014]
synonym: "ninth thoracic vertebra" EXACT [FMA:10014]
synonym: "T9 vertebra" EXACT [FMA:10014]
xref: EMAPA:19550
xref: FMA:10014
xref: MA:0001446
xref: ncithesaurus:T9_Vertebra
xref: SCTID:181837003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004634
name: thoracic vertebra 10
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "T10 vertebra" EXACT [FMA:10037]
synonym: "Tenth dorsal vertebra" EXACT [FMA:10037]
synonym: "tenth thoracic vertebra" EXACT [FMA:10037]
xref: EMAPA:19551
xref: FMA:10037
xref: MA:0001447
xref: ncithesaurus:T10_Vertebra
xref: SCTID:181838008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004635
name: thoracic vertebra 11
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Eleventh dorsal vertebra" EXACT [FMA:10059]
synonym: "eleventh thoracic vertebra" EXACT [FMA:10059]
synonym: "T11 vertebra" EXACT [FMA:10059]
xref: EMAPA:19552
xref: FMA:10059
xref: MA:0001448
xref: ncithesaurus:T11_Vertebra
xref: SCTID:181839000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004636
name: thoracic vertebra 12
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "T12 vertebra" EXACT [FMA:10081]
synonym: "Twelfth dorsal vertebra" EXACT [FMA:10081]
synonym: "twelfth thoracic vertebra" EXACT [FMA:10081]
xref: EMAPA:19553
xref: FMA:10081
xref: MA:0001449
xref: ncithesaurus:T12_Vertebra
xref: SCTID:181840003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0004637
name: otic capsule
namespace: uberon
def: "The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500]
comment: Taxon notes: developmental relationships need to be checked
synonym: "auditory capsule" RELATED [VHOG:0000854]
synonym: "otic capsule" EXACT [ZFA:0001500]
synonym: "periotic" RELATED []
synonym: "periotic capsule" RELATED [VHOG:0000854]
xref: AAO:0010143
xref: SCTID:361515007
xref: VHOG:0000854
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0010351 ! otic capsule cartilage condensation
relationship: part_of UBERON:0001694 {source="EHDAA2"} ! petrous part of temporal bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0004648
name: esophagus muscularis mucosa
namespace: uberon
synonym: "esophagus muscularis mucosae" EXACT []
synonym: "lamina muscularis of esophageal mucous membrane" EXACT [FMA:63059]
synonym: "muscularis mucosae of esophagus" EXACT [FMA:63059]
xref: FMA:63059
xref: MA:0002681
xref: ncithesaurus:Esophageal_Muscularis_Mucosa
xref: SCTID:47720007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002112 ! smooth muscle of esophagus
is_a: UBERON:0006676 ! muscularis mucosa
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa

[Term]
id: UBERON:0004649
name: sphenoid bone pterygoid process
namespace: uberon
def: "The pterygoid processes of the sphenoid, one on either side, descend perpendicularly from the regions where the body and great wings unite. Each process consists of a medial pterygoid plate and a lateral pterygoid plate, the upper parts of which are fused anteriorly; a vertical sulcus, the pterygopalatine groove, descends on the front of the line of fusion. The plates are separated below by an angular cleft, the pterygoid fissure (or pterygoid notch), the margins of which are rough for articulation with the pyramidal process of the palatine bone. The two plates diverge behind and enclose between them a V-shaped fossa, the pterygoid fossa, which contains pterygoideus internus and tensor veli palatini. Above this fossa is a small, oval, shallow depression, the scaphoid fossa, which gives origin to the tensor veli palatini. The anterior surface of the pterygoid process is broad and triangular near its root, where it forms the posterior wall of the pterygopalatine fossa and presents the anterior orifice of the pterygoid canal." [Wikipedia:Pterygoid_processes_of_the_sphenoid]
comment: todo - check AAO:0000521-pterygoid and MA:0001471-pterygoid bone. MA also has 'inner plate of pterygoid process' as a syn for MA:0001471, FMA has lateral/medial plates. Seems likely inner = lateral (see  MP:0004452).
synonym: "processus pterygoideus" EXACT [FMA:54682]
synonym: "processus pterygoideus ossis sphenoidalis" EXACT [FMA:54682, FMA:TA]
synonym: "pterygoid plate" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
synonym: "pterygoid process" EXACT [FMA:54682]
synonym: "pterygoid process" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
synonym: "pterygoid process of sphenoid" EXACT [FMA:54682]
synonym: "pterygoid process of sphenoid bone" EXACT [FMA:54682]
synonym: "pterygoid process of sphenoid bone" RELATED [MA:0002774]
synonym: "pterygoid processes" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
synonym: "pterygoid processus" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
xref: AAO:0010086
xref: FMA:54682
xref: MA:0002774
xref: SCTID:140390001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001677 ! sphenoid bone

[Term]
id: UBERON:0004651
name: scapula spine
namespace: uberon
def: "a prominent plate of bone, which crosses obliquely the medial four-fifths of the scapula at its upper part, and separates the supra- from the infraspinatous fossa." [Wikipedia:Spine_of_scapula]
comment: Taxon notes: the cleithrum, the major shoulder bone of extinct land vertebrate ancestors,.. appears to survive as the scapular spine in living mammals[Matsuoka, PMC1352163]
synonym: "scapular spine" RELATED [FMA:13453, MA:0002806]
synonym: "spine of scapula" EXACT [FMA:13453]
xref: EMAPA:25123
xref: FMA:13453
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Gray205_left_scapula_lateral_view.png/200px-Gray205_left_scapula_lateral_view.png
xref: MA:0002806
xref: SCTID:181916005
property_value: "homologous_to" UBERON:0004741
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001124 {source="FMA"} ! pectoral limb scapula

[Term]
id: UBERON:0004652
name: humerus diaphysis
namespace: uberon
synonym: "body of humerus" EXACT [FMA:13305]
synonym: "corpus humeri" EXACT [FMA:13305, FMA:TA]
synonym: "diaphysis of humerus" EXACT [FMA:13305]
synonym: "humeral diaphysis" EXACT [FMA:13305]
synonym: "shaft of humerus" EXACT [FMA:13305]
xref: EMAPA:25051
xref: FMA:13305
xref: MA:0002807
xref: SCTID:181927007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus

[Term]
id: UBERON:0004654
name: temporal process of zygomatic bone
namespace: uberon
def: "The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve." [Wikipedia:Temporal_process_of_the_zygomatic_bone]
synonym: "processus temporalis (os zygomaticum)" EXACT [FMA:52904]
synonym: "zygomatic bone temporal process" EXACT [MA:0002812]
xref: EMAPA:19015
xref: FMA:52904
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray166.png/200px-Gray166.png
xref: MA:0002812
xref: SCTID:122772003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001683 ! zygomatic bone
relationship: part_of UBERON:0002500 ! zygomatic arch

[Term]
id: UBERON:0004655
name: zygomatic process of temporal bone
namespace: uberon
alt_id: UBERON:0004653
def: "The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward." [Wikipedia:Zygomatic_process_of_temporal_bone]
synonym: "processus zygomaticus" EXACT [FMA:52886]
synonym: "temporal bone zygomatic process" EXACT [MA:0002811]
synonym: "temporal zygomatic process" EXACT [FMA:52886]
xref: EMAPA:19015
xref: FMA:52886
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png
xref: MA:0002811
xref: SCTID:414110008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0002500 ! zygomatic arch

[Term]
id: UBERON:0004657
name: mandible condylar process
namespace: uberon
def: "The posterior process on the ramus of the mandible composed of two parts: a superior part, the articular portion, and an inferior part, the condylar neck." [BTO:0001750, Wikipedia:Mandibular_condyle]
synonym: "condylar process of mandible" EXACT [FMA:52836]
synonym: "mandibular condyle" EXACT [BTO:0001750]
synonym: "mandibular condyloid process" RELATED [MA:0002816]
synonym: "Processus condylaris" EXACT [FMA:52836]
xref: BTO:0001750
xref: FMA:52836
xref: GAID:219
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Processuscondylarismandibulae.PNG/200px-Processuscondylarismandibulae.PNG
xref: MA:0002816
xref: MESH:A.02.835.232.781.324.502.632.600
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000401 ! mandibular ramus
relationship: part_of UBERON:0001684 ! mandible

[Term]
id: UBERON:0004658
name: mandible head
namespace: uberon
synonym: "head of mandible" EXACT [FMA:59331]
synonym: "Mandibular head" EXACT [FMA:59331]
xref: FMA:59331
xref: MA:0002817
xref: SCTID:51354009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 ! mandible
relationship: part_of UBERON:0004657 ! mandible condylar process

[Term]
id: UBERON:0004659
name: mandible neck
namespace: uberon
synonym: "Mandibular neck" EXACT [FMA:59332]
synonym: "neck of mandible" EXACT [FMA:59332]
xref: FMA:59332
xref: MA:0002818
xref: SCTID:368875004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 ! mandible
relationship: part_of UBERON:0004657 ! mandible condylar process

[Term]
id: UBERON:0004660
name: mandible coronoid process
namespace: uberon
synonym: "coronoid process of mandible" EXACT [FMA:52833]
synonym: "mandibular coronoid process" RELATED [MA:0002819]
synonym: "Processus coronoideus (mandibula)" EXACT [FMA:52833]
xref: FMA:52833
xref: MA:0002819
xref: SCTID:244691004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000401 ! mandibular ramus
relationship: part_of UBERON:0001684 ! mandible

[Term]
id: UBERON:0004661
name: mandible temporal crest
namespace: uberon
synonym: "Crista temporalis (Mandibulae)" EXACT [FMA:59484]
synonym: "temporal crest of mandible" EXACT [FMA:59484]
xref: FMA:59484
xref: MA:0002820
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000401 ! mandibular ramus
relationship: part_of UBERON:0001684 ! mandible

[Term]
id: UBERON:0004662
name: vertebra lamina
namespace: uberon
synonym: "lamina arcus vertebrae" EXACT [FMA:11951, FMA:TA]
synonym: "lamina of vertebra" EXACT [FMA:11951]
synonym: "lamina of vertebral arch" EXACT [FMA:11951]
synonym: "neural arch lamina" EXACT [AAO:0000695]
synonym: "vertebral lamina" EXACT [FMA:11951]
synonym: "vertebral lamina" RELATED [MA:0002876]
xref: AAO:0000695
xref: FMA:11951
xref: MA:0002876
xref: SCTID:277423002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003861 ! neural arch

[Term]
id: UBERON:0004663
name: aorta wall
namespace: uberon
def: "An anatomical wall that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "Aortic wall" EXACT [FMA:14156]
synonym: "wall of aorta" EXACT [FMA:14156]
xref: FMA:14156
xref: MA:0002901
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000415 ! artery wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta

[Term]
id: UBERON:0004665
name: seminal vesicle muscle layer
namespace: uberon
def: "A portion of muscle tissue that is part of a seminal vesicle [Obol]." [OBOL:automatic]
synonym: "muscle layer of seminal vesicle" EXACT [FMA:19404]
synonym: "muscular coat of seminal gland" EXACT [FMA:19404]
synonym: "muscular layer of seminal gland" EXACT [FMA:19404]
synonym: "tunica muscularis (Vesicula seminalis)" EXACT [FMA:19404]
synonym: "tunica muscularis glandulae vesiculosae" EXACT [FMA:19404, FMA:TA]
xref: EMAPA:29773
xref: FMA:19404
xref: MA:0002913
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0000998 ! seminal vesicle
relationship: part_of UBERON:0000998 ! seminal vesicle

[Term]
id: UBERON:0004667
name: interventricular septum muscular part
namespace: uberon
def: "A portion of muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic]
synonym: "Muscular interventricular septum" EXACT [FMA:7134]
synonym: "muscular interventricular septum" RELATED [MA:0002940]
synonym: "muscular part of interventricular septum" EXACT [FMA:7134]
synonym: "Pars muscularis (septi interventricularis)" EXACT [FMA:7134]
xref: EHDAA:2607
xref: EMAPA:18247
xref: FMA:7134
xref: MA:0002940
xref: RETIRED_EHDAA2:0000888
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002385 ! muscle tissue
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0002094 ! interventricular septum
relationship: part_of UBERON:0002094 ! interventricular septum

[Term]
id: UBERON:0004681
name: vestibular system
namespace: uberon
def: "The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright." [Wikipedia:Vestibular_system]
comment: note that FMA and NIF have no part information for this class. This is a GAT in FMA
synonym: "vestibular organ system" EXACT [FMA:7193]
synonym: "vestibular system" EXACT [NIF_GrossAnatomy:nlx_anat_090819]
xref: BTO:0003381
xref: FMA:7193
xref: NIF_GrossAnatomy:nlx_anat_090819
xref: SCTID:361533001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001032 ! sensory system

[Term]
id: UBERON:0004695
name: arterial system smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of an arterial system [Obol]." [OBOL:automatic]
xref: MA:0000704
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004572 ! arterial system
relationship: part_of UBERON:0004572 ! arterial system

[Term]
id: UBERON:0004696
name: venous system smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a venous system [Obol]." [OBOL:automatic]
xref: MA:0000715
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004237 ! blood vessel smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004582 ! venous system
relationship: part_of UBERON:0004237 ! blood vessel smooth muscle
relationship: part_of UBERON:0004582 ! venous system

[Term]
id: UBERON:0004704
name: bone fossa
namespace: uberon
def: "a depression or hollow in a bone[WP]." [Wikipedia:Fossa#Anatomy]
comment: AO notes: General Anatomical term in FMA; not restricted to bone in ncit; surface feature in VAO; note that entities named 'fossa' are cavities in FMA, hence placement here
subset: vertebrate_core
synonym: "fossa" EXACT []
xref: AAO:0010439
xref: FMA:45791
xref: ncithesaurus:Fossa
xref: TAO:0001743
xref: VAO:0005069
xref: ZFA:0005388
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 {source="FMA-implied"} ! anatomical cavity
relationship: part_of UBERON:0001474 ! bone

[Term]
id: UBERON:0004705
name: fenestra
namespace: uberon
def: "an opening in the skull or other bones[WP]." [Wikipedia:Fenestra]
comment: TODO check fenestra vs fossa. fenestra = hole, fossa = depression with bottom?
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001474 ! bone

[Term]
id: UBERON:0004706
name: bulbus cordis
namespace: uberon
def: "The bulbus cordis lies ventral to the primitive ventricle after the developing heart assumes its S-shaped form. Together, the bulbus cordis and the primitive ventricle give rise to the ventricle of the formed heart. The adjacent walls of the bulbus cordis and ventricle approximate, fuse, and finally disappear, and the bulbus cordis now communicates freely with the right ventricle, while the junction of the bulbus with the truncus arteriosus is brought directly ventral to and applied to the atrial canal. By the upgrowth of the ventricular septum the bulbus cordis is in great measure separated from the left ventricle, but remains an integral part of the right ventricle, of which it forms the infundibulum[WP]." [Wikipedia:Bulbus_cordis]
comment: todo - check ZFA
subset: vertebrate_core
synonym: "primitive right ventricle endocardium" EXACT [EHDAA2:0000197, JB:def]
xref: EHDAA2:0000197
xref: EHDAA:438
xref: EHDAA:768
xref: EMAPA:16216
xref: EMAPA:16333
xref: FMA:70300
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray466.png/200px-Gray466.png
xref: ncithesaurus:Bulbus_Cordis
xref: SCTID:361525002
xref: TAO:0000173
xref: ZFA:0000173
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0004708
name: limb/fin
namespace: uberon
alt_id: UBERON:0009872
comment: this class is the union of the classes limb, pectoral fin and pelvic fin.
synonym: "jointed paired lateral appendage" NARROW [UBERON:cjm]
synonym: "limb or fin" EXACT [UBERON:cjm]
synonym: "paired appendage" EXACT [VAO:0000067]
synonym: "pectoral or pelvic appendage" EXACT [UBERON:cjm]
synonym: "pelvic/pectoral appendage" EXACT [UBERON:cjm]
xref: VAO:0000067
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000026 {source="VAO"} ! appendage
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: connected_to UBERON:0007823 ! appendage girdle region
relationship: develops_from UBERON:0004357 {evidence="definitional"} ! limb/fin bud
relationship: part_of UBERON:0010707 {source="VAO"} ! appendage girdle complex

[Term]
id: UBERON:0004709
name: pelvic appendage
namespace: uberon
alt_id: UBERON:0009876
def: "Paired appendage that consists of the posterior appendicular skeleton and associated soft and hard tissues, but excludes the pelvic girdle and its associated soft and hard tissues." [VAO:0000150]
comment: VAO notes - in contrast to VAO, we include separate subclasses for limbs and fins
synonym: "hindlimb/pelvic fin" EXACT [UBERON:cjm]
synonym: "pelvic appendage" EXACT [VAO:0000126]
xref: VAO:0000150
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004708 ! limb/fin
intersection_of: UBERON:0004708 ! limb/fin
intersection_of: connected_to UBERON:0001271 ! pelvic girdle region
relationship: connected_to UBERON:0001271 ! pelvic girdle region
relationship: develops_from UBERON:0005420 {evidence="definitional"} ! hindlimb/pelvic fin bud
relationship: part_of UBERON:0000154 ! posterior region of body
relationship: part_of UBERON:0010709 {source="VAO"} ! pelvic complex

[Term]
id: UBERON:0004710
name: pectoral appendage
namespace: uberon
alt_id: UBERON:0009875
def: "Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues." [VAO:0000150-modified]
synonym: "anterior limb/fin" EXACT [UBERON:cjm]
synonym: "anterior paired appendage" EXACT [VAO:0000148]
synonym: "forelimb or pectoral fin" EXACT [UBERON:cjm]
synonym: "forelimb/pectoral fin" EXACT [UBERON:cjm]
xref: VAO:0000148
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004708 ! limb/fin
intersection_of: UBERON:0004708 ! limb/fin
intersection_of: connected_to UBERON:0001421 ! pectoral girdle region
relationship: connected_to UBERON:0001421 ! pectoral girdle region
relationship: develops_from UBERON:0005419 {evidence="definitional"} ! forelimb/pectoral fin bud
relationship: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0010708 {source="VAO"} ! pectoral complex

[Term]
id: UBERON:0004715
name: annulus fibrosus disci intervertebralis
namespace: uberon
def: "The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised." [BTO:0003629, Wikipedia:Annulus_fibrosus_disci_intervertebralis]
synonym: "annulus fibrosus" BROAD [MA:0000111]
synonym: "annulus fibrosus of intervertebral disc" RELATED [BTO:0003629]
synonym: "anulus fibrosus (diskus intervertebralis)" EXACT [FMA:13551]
synonym: "anulus fibrosus of intervertebral disk" EXACT [FMA:13551]
synonym: "fibrous ring of intervertebral disc" RELATED [BTO:0003629]
xref: BTO:0003629
xref: FMA:13551
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png
xref: MA:0000111
xref: Wikipedia:Annulus_fibrosus_disci_intervertebralis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004267 ! back connective tissue
is_a: UBERON:0006444 ! annulus fibrosus
intersection_of: UBERON:0006444 ! annulus fibrosus
intersection_of: part_of UBERON:0001066 ! intervertebral disk
relationship: part_of UBERON:0001066 ! intervertebral disk

[Term]
id: UBERON:0004732
name: segmental subdivision of nervous system
namespace: uberon
def: "An organ segment that is part of a nervous system [Obol]." [OBOL:automatic]
comment: Editor note: revisit this after CARO is revised and/or we have defined metameric segment
synonym: "neuromere" RELATED [FBbt:00005140]
xref: FBbt:00005140
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0000073 ! regional part of nervous system
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0001016 ! nervous system

[Term]
id: UBERON:0004740
name: basibranchial
namespace: uberon
def: "Median ventral cartilage or bony element at the ventral point of a branchial arch, behind the tongue." [http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is, http://www.merriam-webster.com/dictionary/basibranchial]
synonym: "basibranchials" EXACT [ZFA:0000170]
synonym: "copula I" RELATED [AAO:0000686]
xref: AAO:0000686
xref: EFO:0003503
xref: TAO:0000170
xref: ZFA:0000170
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! viscerocranium bone
relationship: part_of UBERON:0005886 {source="ZFA"} ! pharyngeal arch 3-7 skeleton

[Term]
id: UBERON:0004741
name: cleithrum
namespace: uberon
def: "Dermal bone on the margin of the scapula. The cleithrum is attached to the skull in fishes, but free from the latter in amphibians and disappears early in the evolution of reptiles." [VAO:0000187]
comment: Taxon notes: Found in some early members of Chelonia (e.g. Triassochelys), but missing in all later forms.[VAO]
synonym: "cleithra" EXACT [ZFA:0000184]
xref: AAO:0000750
xref: EFO:0003507
xref: TAO:0000184
xref: VAO:0000187
xref: ZFA:0000184
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007829 ! pectoral girdle bone
is_a: UBERON:0008907 {source="ZFA"} ! dermal bone
relationship: part_of UBERON:0007831 {source="ZFA"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0004742
name: dentary
namespace: uberon
def: "Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans." [Wikipedia:Dentary#In_other_vertebrates, ZFA:0000191]
comment: Taxon notes: In lobe-finned fishes and the early fossil tetrapods, the bone homologous to the mandible of mammals is merely the largest of several bones in the lower jaw. In such animals, it is referred to as the dentary bone, and forms the body of the outer surface of the jaw. It is bordered below by a number of splenial bones, while the angle of the jaw is formed by a lower angular bone and a suprangular bone just above it. The inner surface of the jaw is lined by a prearticular bone, while the articular bone forms the articulation with the skull proper. Finally a set of three narrow coronoid bones lie above the prearticular bone. As the name implies, the majority of the teeth are attached to the dentary, but there are commonly also teeth on the coronoid bones, and sometimes on the prearticular as well. This complex primitive pattern has, however, been simplified to various degrees in the great majority of vertebrates, as bones have either fused or vanished entirely. In teleosts, only the dentary, articular, and angular bones remain, while in living amphibians, the dentary is accompanied only by the prearticular, and, in salamanders, one of the coronoids. The lower jaw of reptiles has only a single coronoid and splenial, but retains all the other primitive bones except the prearticular.
synonym: "dentale" RELATED [AAO:0000124]
synonym: "dentary bone" EXACT [ZFA:0000191]
synonym: "os dentale" RELATED [AAO:0000124]
synonym: "sur-angulaire" RELATED [AAO:0000124]
xref: AAO:0000124
xref: EFO:0003508
xref: TAO:0000191
xref: VHOG:0001022
xref: ZFA:0000191
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004766 ! cranial bone
is_a: UBERON:0004768 ! bone of lower jaw
relationship: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0003113 ! dermatocranium

[Term]
id: UBERON:0004743
name: coracoid bone
namespace: uberon
def: "Endochondral bone that is paired and forms part of the socket for the humerus in tetrapods and acts as base of the pectoral fin in fish." [VAO:curator, Wikipedia:Coracoid]
comment: Procoracoid+coracoid are homologuous with coracoid of teleostomi. The coracoid is a triangular shaped-bone that usually has an anteriorly directed long process that may joins its counterpart in some fish groups. It may be perforated by the coracoid foramen or it may be notched dorsally and forms the scapulo-coracoid foramen together with a similar notch of the ventral margin of the scapula[VAO] Editor notes: we would like to make pectoral girdle and limb spatially disjoint, check where this structure belongs // check coracoid process // see also - procoracoid and epicoracoid
synonym: "clavicula" RELATED [AAO:0000764]
synonym: "clavicula posterior" RELATED [AAO:0000764]
synonym: "clavicula vera" RELATED [AAO:0000764]
synonym: "coracoid" EXACT [ZFA:0000332]
synonym: "coracoideum" RELATED [AAO:0000764]
synonym: "coracoidien" RELATED [AAO:0000764]
synonym: "coracoids" EXACT [ZFA:0000332]
synonym: "metacoracoid " RELATED [VAO:0000158]
synonym: "pars sternalis scapulae" RELATED [AAO:0000764]
synonym: "scapulocoracoid" RELATED [ZFA:0000332]
xref: AAO:0000764
xref: TAO:0000332
xref: VAO:0000158
xref: ZFA:0000332
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 {source="VAO"} ! endochondral bone
is_a: UBERON:0007829 ! pectoral girdle bone
disjoint_from: UBERON:0006633 ! coracoid process
relationship: develops_from UBERON:0004753 ! scapulocoracoid
relationship: part_of UBERON:0007831 {source="VAO"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0004744
name: articular
namespace: uberon
def: "The anguloarticular is a compound bone that results of the fusion of the dermal angular and the cartilaginous articular and forms the posterior part of the lower jaw. The dermal part ossifies initially on the posterolateral surface of Meckel's cartilage near the articulation with the quadrate (5.5 mm NL). A posterior process forms, creating a synovial joint with the quadrate[ZFA]. Endochondral ossification of the posterior articular part of Meckel's cartilage." [AAO:0000028, Wikipedia:Articular, ZFA:0000467]
comment: Editor notes: We create different classes for articular and malleus, in contrast to VHOG. Taxon notes (from VHOG): "According to this theory [Reichert-Gaupp theory], the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular [...]" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357
synonym: "angulaire" RELATED [AAO:0000028]
synonym: "angulare" RELATED [AAO:0000028]
synonym: "anguloarticular" EXACT [ZFA:0000467]
synonym: "articular" EXACT [ZFA:0000467]
synonym: "dermarticulare" RELATED [AAO:0000028]
synonym: "goniale" RELATED [AAO:0000028]
synonym: "operculo angulaire" RELATED [AAO:0000028]
xref: AAO:0000028
xref: EFO:0003530
xref: TAO:0000467
xref: VHOG:0000690
xref: ZFA:0000467
property_value: "homologous_to" UBERON:0001689
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004766 ! cranial bone
is_a: UBERON:0004768 ! bone of lower jaw
relationship: develops_from UBERON:0001086 ! articular cartilage
relationship: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0003113 ! dermatocranium

[Term]
id: UBERON:0004745
name: parasphenoid
namespace: uberon
def: "Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic." [ZFA:0000561]
synonym: "keilbein" RELATED [AAO:0000385]
synonym: "os parasphenoidale" RELATED [AAO:0000385]
synonym: "os sphenoideum" RELATED [AAO:0000385]
synonym: "parabasale" RELATED [AAO:0000385]
xref: AAO:0000385
xref: TAO:0000561
xref: ZFA:0000561
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003465 ! chondrocranium bone
relationship: part_of UBERON:0001697 ! orbit
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0003111 ! sphenoid region
relationship: part_of UBERON:0003112 ! olfactory region
relationship: part_of UBERON:0003113 ! dermatocranium

[Term]
id: UBERON:0004746
name: prootic
namespace: uberon
def: "Paired, endochondral bones forming the anterior, and lateral walls of the otic capsules." [AAO:0000514]
xref: AAO:0000514
xref: EFO:0003542
xref: TAO:0000575
xref: ZFA:0000575
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0004637 ! otic capsule
relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0003110 ! otic region

[Term]
id: UBERON:0004747
name: supraoccipital
namespace: uberon
alt_id: UBERON:0005237
def: "In humans: a bone on the dorsal side of the great foramen of the skull, usually forming a part of the occipital in the adult, but distinct in the young[DF]. In teleosts: Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exocciptial and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally." [ZFA:0000595]
subset: vertebrate_core
synonym: "supraoccipital bone" EXACT [MA:0001474]
xref: AAO:0000588
xref: MA:0001474
xref: SCTID:95947006
xref: TAO:0000595
xref: VHOG:0001150
xref: ZFA:0000595
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0004748
name: autopalatine
namespace: uberon
def: "The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms)." [ZFA:0000620]
synonym: "neopalatine" BROAD [AAO:0000372]
synonym: "palatine" EXACT [ZFA:0000620]
xref: AAO:0000372
xref: TAO:0000620
xref: ZFA:0000620
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! viscerocranium bone
relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0004751
name: hypohyal bone
namespace: uberon
def: "Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present." [ZFA:0001381]
xref: AAO:0000958
xref: TAO:0001381
xref: ZFA:0001381
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone

[Term]
id: UBERON:0004752
name: palatoquadrate cartilage
namespace: uberon
def: "the dorsal component of the mandibular arch, the ventral one being Meckel's cartilage" [Wikipedia:Palatoquadrate]
synonym: "dorsal mandibular cartilage" EXACT [ZFA:0001399]
synonym: "pterygoquadrate" EXACT [ZFA:0001399]
synonym: "quadrate cartilage" EXACT [ZFA:0001399]
xref: AAO:0000524
xref: TAO:0001399
xref: ZFA:0001399
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003933 ! cranial cartilage
relationship: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0003108 ! suspensorium

[Term]
id: UBERON:0004753
name: scapulocoracoid
namespace: uberon
def: "Skeletal element that consists of the scapula and the coracoid[VAO, modified]." [VAO:0005002, Wikipedia:Scapulocoracoid]
comment: AO notes: ZFA defines as precursor to scapula and coracoid. Taxon notes: Fused, ossified portions of the scapula, procoracoid, and coracoid[AAO] Cartilage in TAO. Editor notes: todo - decide whether to create separate classes for cartilage & ossified
synonym: "coraco-scapular cartilage" NARROW [ZFA:0001455]
synonym: "scapulocoracoideum" EXACT [VAO:0005002]
xref: AAO:0000781
xref: TAO:0001455
xref: VAO:0005002
xref: ZFA:0001455
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0007831 {source="VAO"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0004754
name: foramen ovale of heart
namespace: uberon
def: "In the fetal heart, the foramen ovale (also ostium secundum of Born or falx septi) allows blood to enter the left atrium from the right atrium. It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus. In most individuals, the foramen ovale (pronounced /fɒˈreɪmən oʊˈvɑːli/) closes at birth. It later forms the fossa ovalis[WP]." [Wikipedia:Foramen_ovale_(heart)]
synonym: "Bottalo's foramen" EXACT [FMA:86043]
synonym: "falx septi" EXACT [Wikipedia:Foramen_ovale_(heart)]
synonym: "foramen ovale" NARROW [galen:ForamenOvale, MA:0001873]
synonym: "foramen ovale cordis" EXACT [galen:ForamenOvaleCordis]
synonym: "ostium secundum of Born" EXACT [Wikipedia:Foramen_ovale_(heart)]
xref: EHDAA2:0004142
xref: EMAPA:18244
xref: FMA:86043
xref: galen:ForamenOvale
xref: galen:ForamenOvaleCordis
xref: MA:0001873
xref: ncithesaurus:Oval_Foramen
xref: SCTID:362015004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002085 ! interatrial septum

[Term]
id: UBERON:0004755
name: skeletal tissue
namespace: uberon
def: "Connective tissue that functions in mechanical and structural support." [VAO:0000015]
comment: Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from
synonym: "mineralized tissue" NARROW []
xref: SCTID:309311006
xref: VAO:0000015
xref: XAO:0004038
xref: ZFA:0005619
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 {source="VAO"} ! connective tissue
relationship: part_of UBERON:0004765 ! skeletal element

[Term]
id: UBERON:0004756
name: dermal skeletal element
namespace: uberon
def: "dermis-derived entity that is made of skeletal tissue." []
synonym: "dermal element" EXACT [VAO:curator]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010317 ! germ layer / neural crest derived structure
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: develops_from UBERON:0002067 ! dermis
intersection_of: has_part UBERON:0004755 ! skeletal tissue
relationship: develops_from UBERON:0002067 ! dermis
relationship: has_part UBERON:0004755 ! skeletal tissue

[Term]
id: UBERON:0004761
name: cartilaginous neurocranium
namespace: uberon
def: "the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium]
comment: note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain)
synonym: "cartilaginous chondocranium" EXACT []
synonym: "cartilaginous skull" RELATED []
synonym: "cartiligionous skeletal structure of skull" EXACT []
synonym: "chondocranium" RELATED [Wikipedia:Chondrocranium]
synonym: "neurocranium" RELATED SENSU []
xref: AAO:0000094
xref: AAO:0010153
xref: EHDAA:6031
xref: FMA:76621
xref: ncithesaurus:Chondrocranium
xref: SCTID:155540009
xref: XAO:0003059
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0009617 {source="PMC1571569"} ! head paraxial mesoderm
relationship: has_part UBERON:0002418 ! cartilage tissue

[Term]
id: UBERON:0004763
name: endochondral bone tissue
namespace: uberon
def: "Replacement bone tissue that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_bone]
comment: note the distinction between endochondral bone and endochondral bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type
subset: uberon_slim
subset: vertebrate_core
synonym: "replacement bone" BROAD [ZFA:0001628]
xref: AAO:0010768
xref: MA:0002836
xref: TAO:0001637
xref: ZFA:0001628
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
is_a: UBERON:0010522 {source="ZFA"} ! replacement element
disjoint_from: UBERON:0004764 ! intramembranous bone tissue
relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0002513 ! endochondral bone

[Term]
id: UBERON:0004764
name: intramembranous bone tissue
namespace: uberon
def: "Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
comment: note the distinction between intramembranous bone and intramembranous bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type.
xref: MA:0002837
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0002514 ! intramembranous bone

[Term]
id: UBERON:0004765
name: skeletal element
namespace: uberon
def: "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
comment: TODO - add more general class for other kinds of mineralized tissue
subset: organ_slim
subset: uberon_slim
xref: galen:SkeletalStructure
xref: TAO:0001890
xref: VAO:0000128
xref: XAO:0004012
xref: ZFA:0005494
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001434 {source="VAO"} ! skeletal system

[Term]
id: UBERON:0004766
name: cranial bone
namespace: uberon
def: "A bone that is part of a cranium." [UBERON:automatic]
synonym: "cranium bone" EXACT [UBERON:automatic]
xref: SCTID:181792001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0003457 ! head bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003128 ! cranium
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0004767
name: vomerine tooth
namespace: uberon
def: "A tooth that is on the vomer." [http://www.encyclo.co.uk/define/Vomerine%20teeth]
xref: AAO:0000635
xref: TAO:0001631
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0004768
name: bone of lower jaw
namespace: uberon
def: "Any bone that is part of the lower jaw. This includes (when present): the dentary, the articular, the single jaw bone of mammals" [UBERON:cjm]
comment: Editor notes: Do not manually classify under here - bones are automatically classified
subset: grouping_class
synonym: "bone of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "bone organ of lower jaw" EXACT [OBOL:automatic]
synonym: "bone organ of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw bone" EXACT []
synonym: "lower jaw bone organ" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone organ" EXACT [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0004769
name: diaphysis
namespace: uberon
def: "Subdivision of long bone which forms the part of the bone between the two epiphyses; together with other the subdivisions of long bone, it constitutes the long bone. Examples: diaphysis of humerus, diaphysis of femur[FMA]. the main or mid section (shaft) of a long bone. It is made up of cortical bone and usually contains bone marrow and adipose tissue (fat)." [Wikipedia:Diaphysis]
subset: uberon_slim
synonym: "body of long bone" EXACT []
synonym: "long bone diaphysis" EXACT []
synonym: "shaft of long bone" EXACT []
xref: FMA:24013
xref: GAID:189
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg
xref: MESH:A.02.835.232.169
xref: SCTID:361729006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone

[Term]
id: UBERON:0004770
name: articular system
namespace: uberon
def: "Anatomical system that consists of all the joints of the body." [VAO:0000181]
synonym: "joint system" EXACT [FMA:23878]
synonym: "set of all joints" RELATED []
synonym: "set of all joints of body" EXACT [FMA:23878]
xref: FMA:23878
xref: MA:0003007
xref: SCTID:361827000
xref: VAO:0000181
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 {source="VAO"} ! anatomical system
relationship: has_part UBERON:0000982 ! skeletal joint
relationship: part_of UBERON:0001434 {source="FMA"} ! skeletal system

[Term]
id: UBERON:0004771
name: posterior nasal aperture
namespace: uberon
def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, Wikipedia:Posterior_nasal_apertures]
comment: Fish don't have choanae, instead they have two pairs of external nostrils[WP] In addition to tetrapods, the lungfish has internal nostrils too. TODO: check part_of vs adjacent_to nasal cavity. In tetrapods the exhalant nostril (choana) empties into the buccal cavity.
synonym: "choana" BROAD [Wikipedia:Choane, XAO:0000277]
synonym: "internal naris" BROAD [MA:0001323]
synonym: "nasopharyngeal naris" RELATED []
xref: AAO:0000093
xref: EHDAA2:0000242
xref: EHDAA:7842
xref: FMA:53143
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Gray855.png/200px-Gray855.png
xref: MA:0001323
xref: SCTID:244507001
xref: VHOG:0000545
xref: XAO:0000277
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010425 ! internal naris
intersection_of: UBERON:0000003 ! naris
intersection_of: adjacent_to UBERON:0001728 ! nasopharynx
intersection_of: part_of UBERON:0001707 ! nasal cavity
relationship: adjacent_to UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0001707 ! nasal cavity
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0004772
name: eyelid tarsus
namespace: uberon
def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [Wikipedia:Tarsus_(eyelids)]
comment: Taxon notes: In most taxa (birds, mammals, lizards), the tarsal plate is described as a dense, fibrous connective tissue, possibly including cartilage, present within one or both of the upper and lower eyelids (Gau- thier et al., 1988; Rieppel, 2000). In humans, the tarsal plate of the upper eyelid is composed of collagens types I, III, and V, as well as glycosaminogly- cans (chondroitin sulphate 4 and 6), aggrecan, and cartilage oligomeric matrix proteins but lacks collagen type II as well as chondrocytes (Milz et al., 2005). Thus, for humans, the upper tarsal plate represents neither a truly fibrous nor a truly cartilagi- nous element but instead one that is composed of a unique transitional tissue (Milz et al., 2005). In many birds, lizards, and Sphenodon (the tuatara), the upper eyelid has lim- ited mobility and a putative tarsal plate is instead found within the lower eyelid (Underwood, 1970; Gau- thier et al., 1988). [PMID:16496288]
subset: organ_slim
synonym: "tarsal plate" EXACT [FMA:59086]
synonym: "tarsal plate of eyelid" EXACT [FMA:59086]
synonym: "tarsus palpebralis" EXACT [PMID:16496288]
xref: FMA:59086
xref: MA:0000270
xref: ncithesaurus:Tarsal_Plate
xref: SCTID:362529005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000094 ! membrane organ
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003581 ! eyelid connective tissue
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0004782
name: gastrointestinal system serosa
namespace: uberon
def: "A serous membrane that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system serosa" EXACT [OBOL:automatic]
synonym: "digestive system serous membrane" EXACT [OBOL:automatic]
synonym: "gastrointestinal system serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of digestive system" EXACT [OBOL:automatic]
synonym: "serosa of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "serous membrane of digestive system" EXACT [OBOL:automatic]
synonym: "serous membrane of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001522
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000042 ! serous membrane
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004786
name: gastrointestinal system mucosa
namespace: uberon
comment: The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468
synonym: "digestive tract mucosa" EXACT [UBERON:cjm]
synonym: "gut mucosa" EXACT [BTO:0000546]
synonym: "gut mucuous membrane" EXACT [UBERON:cjm]
synonym: "mucosa of gut" EXACT [UBERON:cjm]
xref: BTO:0000546
xref: MA:0001521
xref: SCTID:410433007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: adjacent_to UBERON:0006909 {source="BTO-modified"} ! lumen of gut
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004797
name: blood vessel layer
namespace: uberon
xref: MA:0002854
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
intersection_of: UBERON:0004923 ! organ component layer
intersection_of: part_of UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001981 ! blood vessel

[Term]
id: UBERON:0004802
name: respiratory tract epithelium
namespace: uberon
def: "An epithelium that is part of a respiratory tract [Obol]." [OBOL:automatic]
synonym: "airway epithelium" RELATED [BTO:0000419]
synonym: "epithelial tissue of respiratory tract" EXACT [OBOL:automatic]
synonym: "epithelium of respiratory tract" EXACT [OBOL:automatic]
synonym: "respiratory epithelium" RELATED [BTO:0000419]
synonym: "respiratory tract epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0000419
xref: MA:0001480
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0005911 ! endo-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000072 ! segment of respiratory tract

[Term]
id: UBERON:0004807
name: respiratory system epithelium
namespace: uberon
def: "An epithelium that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius epithelial tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelial tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "epithelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelium of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001823
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0004808
name: gastrointestinal system epithelium
namespace: uberon
def: "An epithelium that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive system epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive system" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "epithelium of digestive system" EXACT [OBOL:automatic]
synonym: "epithelium of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001520
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004819
name: kidney epithelium
namespace: uberon
def: "An epithelium that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of kidney" EXACT [OBOL:automatic]
synonym: "epithelium of kidney" EXACT [OBOL:automatic]
synonym: "kidney epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0000059
xref: MA:0002846
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney

[Term]
id: UBERON:0004825
name: dental lamina
namespace: uberon
def: "a band of epithelial tissue seen in histologic sections of a developing tooth. The dental lamina is first evidence of tooth development and begins at the sixth week in utero or three weeks after the rupture of the buccopharyngeal membrane. It is formed when cells of the oral ectoderm proliferate faster than cells of other areas. Best described as an in-growth of oral ectoderm, the dental lamina is frequently distinguished from the vestibular lamina, which develops concurrently. This dividing tissue is surrounded by and, some would argue, stimulated by ectomysenchymal growth. When it is present, the dental lamina connects the developing tooth bud to the epithelium of the oral cavity. Eventually, the dental lamina disintegrates into small clusters of epithelium and is resorbed. In situations when the clusters are not resorbed, (this remanent of the dental lamina is sometimes known as the glands of Serres) eruption cysts are formed over the developing tooth and delay its eruption into the oral cavity. This invagination of ectodermal tissues is the proginitor to the later ameloblasts and enamel while the ectomysenchyme is responsible for the dental papilla and later odontoblasts." [Wikipedia:Dental_lamina]
comment: Homology notes: In the epidermis of embryonic birds, there remains a transient thickening that is comparable to the early formation of the dental lamina in the mouse[PMID:10954731]. AO notes: check MA placement
xref: EMAPA:18292
xref: EMAPA:18295
xref: EMAPA:18298
xref: EMAPA:18301
xref: MA:0001597
xref: SCTID:362862007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000957 ! lamina
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001091 {source="MA"} ! calcareous tooth

[Term]
id: UBERON:0004829
name: urethra skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "skeletal muscle of urethra" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "urethral skeletal muscle" RELATED [MA:0001690]
xref: MA:0001690
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0003829 ! urethra muscle

[Term]
id: UBERON:0004830
name: respiratory system skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "respiratory system skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "skeletal muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001829
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system

[Term]
id: UBERON:0004831
name: esophagus skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: MA:0001572
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003898 ! skeletal muscle of trunk
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0003832 ! esophagus muscle

[Term]
id: UBERON:0004832
name: anal region skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001530
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004833
name: lip skeletal muscle
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a lip [Obol]." [OBOL:automatic]
synonym: "lip skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of lip" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of lip" EXACT [OBOL:automatic]
xref: MA:0001578
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003899 ! skeletal muscle of head
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001833 ! lip
relationship: part_of UBERON:0001833 ! lip

[Term]
id: UBERON:0004834
name: hepatic duct smooth muscle
namespace: uberon
xref: MA:0001640
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0005171 ! hepatic duct
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0004835
name: epididymis smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a epididymis [Obol]." [OBOL:automatic]
synonym: "epididymis involuntary muscle" EXACT [OBOL:automatic]
synonym: "epididymis non-striated muscle" EXACT [OBOL:automatic]
synonym: "epididymis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "epididymus involuntary muscle" EXACT [OBOL:automatic]
synonym: "epididymus non-striated muscle" EXACT [OBOL:automatic]
synonym: "epididymus smooth muscle" EXACT [OBOL:automatic]
synonym: "epididymus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of epididymis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of epididymus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of epididymis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of epididymus" EXACT [OBOL:automatic]
synonym: "smooth muscle of epididymis" EXACT [OBOL:automatic]
synonym: "smooth muscle of epididymus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of epididymis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of epididymus" EXACT [OBOL:automatic]
xref: MA:0001736
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 ! epididymis

[Term]
id: UBERON:0004854
name: gastrointestinal system mesentery
namespace: uberon
def: "A mesentery that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of digestive system" EXACT [OBOL:automatic]
synonym: "mesentery of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001900
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0004782 ! gastrointestinal system serosa
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0004858
name: cellular cartilage
namespace: uberon
xref: MA:0000105
xref: SCTID:81997001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue

[Term]
id: UBERON:0004865
name: teleost parietal bone
namespace: uberon
def: "Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [ZFA:0000486]
comment: The parietal bone in teleost fish is the homolog of the frontal bone in tetrapods
synonym: "frontal bone" NARROW [FMA:52734]
synonym: "parietal bone" NARROW SENSU [TAO:0000486]
synonym: "post parietal" RELATED [ZFA:0000486]
synonym: "teleost parietal" EXACT []
xref: TAO:0000486
xref: VHOG:0001327
xref: ZFA:0000486
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004766 ! cranial bone
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0004866
name: teleost frontal bone
namespace: uberon
def: "One of two large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [ZFA:0000514]
comment: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods
synonym: "frontal bone" NARROW [TAO:0000514]
synonym: "teleost frontal" EXACT [TAO:0000514]
synonym: "teleost frontal bone" EXACT [TAO:0000514]
xref: TAO:0000514
xref: VHOG:0001324
xref: ZFA:0000514
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004766 ! cranial bone
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0004867
name: orbital cavity
namespace: uberon
xref: FMA:84961
xref: SCTID:280541000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001697 ! orbit

[Term]
id: UBERON:0004871
name: somatic layer of lateral plate mesoderm
namespace: uberon
def: "Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers]
comment: check BILA
synonym: "outer layer of lateral plate mesoderm" EXACT []
synonym: "parietal mesoderm" RELATED [ISBN:9780878932504]
synonym: "somatic mesoderm" RELATED [BILA:0000047]
xref: AAO:0011100
xref: BILA:0000047
xref: XAO:0000271
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003081 ! lateral plate mesoderm

[Term]
id: UBERON:0004872
name: splanchnic layer of lateral plate mesoderm
namespace: uberon
def: "Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers]
comment: todo - check BILA
synonym: "inner layer of lateral plate mesoderm" EXACT []
synonym: "splanchnic mesoderm" RELATED [ISBN:9780878932504]
synonym: "visceral mesoderm" BROAD [BILA:0000044, http://www.drugs.com/dict/visceral-mesoderm.html, http://www.stedmans.com/]
xref: AAO:0011102
xref: BILA:0000044
xref: XAO:0000276
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003081 ! lateral plate mesoderm

[Term]
id: UBERON:0004874
name: somatopleure
namespace: uberon
def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure]
comment: todo - check relationship to LPM
xref: EHDAA2:0001847
xref: EHDAA:381
xref: EMAPA:16180
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png
xref: ncithesaurus:Somatopleure
xref: VHOG:0000557
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: overlaps UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme

[Term]
id: UBERON:0004875
name: nephrogenic cord
namespace: uberon
def: "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
comment: part_of or develops_from urogenital ridge?
xref: FMA:72168
xref: ncithesaurus:Nephrogenic_Cord
xref: SCTID:361405003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004876 ! urogenital ridge
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0004876
name: urogenital ridge
namespace: uberon
def: "An embryological structure which give rise to a portion of the external genitalia. It differentiates into two structures: gonadal ridge -- medial -- primarily reproductive system; nephrogenic cord -- lateral -- primarily urinary system. In the female, the urogenital folds become the labia minora. In contrast, the labia majora are formed by the labioscrotal folds; In the male, they form the spongy urethra and a portion of the shaft of the penis, not including the glans.[WP]." [Wikipedia:Urogenital_folds]
comment: Less commonly, urogenital fold refers to the fold in the mesonephros which is the precursor of e.g. the suspensory ligament of the ovary. This is the case in older versions of Gray's anatomy[WP]
synonym: "urogenital fold" EXACT []
xref: BTO:0001402
xref: EHDAA2:0004022
xref: EMAPA:30888
xref: EMAPA:30899
xref: ncithesaurus:Urogenital_Ridge
xref: SCTID:308801004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: develops_into UBERON:0004176 ! external reproductive organ
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0004880
name: chordamesoderm
namespace: uberon
def: "The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
comment: note that WP treats this as synonym of axial mesoderm
synonym: "axial chorda mesoderm" EXACT [ZFA:0000091]
synonym: "chorda mesoderm" EXACT []
synonym: "dorsal mesoderm" EXACT [UBERONREF:0000002]
synonym: "presumptive notochord" EXACT [ZFA:0000091]
xref: :chordamesoderm
xref: AAO:0000478
xref: EFO:0003426
xref: TAO:0000091
xref: ZFA:0000091
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003068 ! axial mesoderm

[Term]
id: UBERON:0004895
name: alveolar smooth muscle
namespace: uberon
def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus" [LG:0012628]
xref: MA:0002759
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004225 ! respiratory system smooth muscle
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0002299 ! alveolus of lung

[Term]
id: UBERON:0004902
name: urogenital sinus epithelium
namespace: uberon
def: "The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [PMID:18977204]
comment: we follow EHDAA2 in dividing the UGS into epithelium and lumen
synonym: "epithelium of urogenital sinus" EXACT [OBOL:automatic]
synonym: "UGE" EXACT [PMID:18977204]
xref: EHDAA2:0004061
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 {source="PMID:18977204"} ! epithelium
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0009846 ! embryonic cloacal epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus
relationship: develops_from UBERON:0009846 {source="EHDAA2"} ! embryonic cloacal epithelium
relationship: part_of UBERON:0000164 ! primitive urogenital sinus

[Term]
id: UBERON:0004905
name: articulation
namespace: uberon
def: "anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." []
subset: grouping_class
xref: FBbt:00005811
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster

[Term]
id: UBERON:0004909
name: epithelium of gonad
namespace: uberon
def: "An epithelium surrounding a gonad." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "gonad epithelium" EXACT [OBOL:automatic]
synonym: "gonadal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4032
xref: EHDAA:5931
xref: FBbt:00004859
xref: ncithesaurus:Germinal_Epithelium
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0000991 ! gonad

[Term]
id: UBERON:0004910
name: epithelium of male gonad
namespace: uberon
def: "An epithelium surrounding a testis." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "testis epithelium" EXACT [OBOL:automatic]
synonym: "testis sheath" NARROW SENSU [FBbt:00004955]
xref: BTO:0001364
xref: EMAPA:17973
xref: FBbt:00004955
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004909 ! epithelium of gonad
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000473 ! testis
relationship: part_of UBERON:0000473 ! testis

[Term]
id: UBERON:0004912
name: biliary bud
namespace: uberon
synonym: "hepatic diverticulum" RELATED [EMAPA:16561]
xref: EHDAA2:0000171
xref: EMAPA:16561
xref: EMAPA:16565
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png
xref: VHOG:0001351
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0009497 ! epithelium of foregut-midgut junction
relationship: develops_from UBERON:0004161 {source="EHDAA2-modified"} ! septum transversum
relationship: part_of UBERON:0006235 {source="EMAPA"} ! foregut-midgut junction

[Term]
id: UBERON:0004913
name: hepatopancreatic ampulla
namespace: uberon
def: "A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct." [Wikipedia:Ampulla_of_Vater]
subset: vertebrate_core
synonym: "ampulla biliaropancreatica" EXACT [FMA:15076, FMA:TA]
synonym: "ampulla of bile duct" EXACT [FMA:15076]
synonym: "ampulla of Vater" EXACT []
synonym: "biliaropancreatic ampulla" EXACT []
synonym: "papilla duodeni major" RELATED [ZFA:0005167]
synonym: "papilla Vateri" EXACT [ZFA:0005167]
synonym: "Vater's ampulla" EXACT []
xref: FMA:15076
xref: GAID:283
xref: galen:AmpullaOfVater
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Biliary_system_new.svg/200px-Biliary_system_new.svg.png
xref: MESH:A.03.159.183.079.300.900
xref: ncithesaurus:Ampulla_of_Vater
xref: SCTID:362200007
xref: TAO:0005167
xref: ZFA:0005167
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001174 ! common bile duct
intersection_of: part_of UBERON:0004914 ! duodenal papilla
relationship: part_of UBERON:0001174 ! common bile duct
relationship: part_of UBERON:0004914 ! duodenal papilla

[Term]
id: UBERON:0004914
name: duodenal papilla
namespace: uberon
def: "." [Wikipedia:Major_duodenal_papilla, Wikipedia:Minor_duodenal_papilla]
synonym: "papilla of duodenum" EXACT []
xref: EMAPA:18662
xref: EMAPA:18853
xref: FMA:15953
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
xref: SCTID:245389007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002114 ! duodenum

[Term]
id: UBERON:0004915
name: sphincter of hepatopancreatic ampulla
namespace: uberon
def: "muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]." [Wikipedia:Sphincter_of_Oddi]
synonym: "hepatopancreatic ampullary sphincter" EXACT [FMA:15077]
synonym: "musculus sphincter ampullae" EXACT [FMA:15077]
synonym: "Oddi's sphincter" EXACT []
synonym: "sphincter of ampulla of vater" EXACT [FMA:15077]
synonym: "sphincter of Oddi" EXACT []
xref: EMAPA:18663
xref: EMAPA:18854
xref: FMA:15077
xref: GAID:285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
xref: MESH:A.03.159.183.079.300.900.600
xref: ncithesaurus:Sphincter_of_Oddi
xref: SCTID:181271000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004590 ! sphincter muscle
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0004913 ! hepatopancreatic ampulla
relationship: part_of UBERON:0004913 ! hepatopancreatic ampulla

[Term]
id: UBERON:0004916
name: anal sphincter
namespace: uberon
def: "A sphincter muscle in the anal part of the perineum." [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004519 ! muscle of anal triangle
is_a: UBERON:0004590 ! sphincter muscle
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region

[Term]
id: UBERON:0004917
name: urethral sphincter
namespace: uberon
def: "A sphincter muscle surrounding the urethra." [Wikipedia:Urethral_sphincter]
synonym: "sphincter muscle of urethra" EXACT []
synonym: "sphincter of urethra" EXACT []
synonym: "urethral sphincter muscle" EXACT []
xref: MA:0002650
xref: SCTID:277855007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003829 ! urethra muscle
is_a: UBERON:0004590 ! sphincter muscle
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0001556 ! lower urinary tract

[Term]
id: UBERON:0004918
name: internal urethral sphincter
namespace: uberon
def: "a urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]." [Wikipedia:Internal_sphincter_muscle_of_urethra]
synonym: "internal sphincter muscle of urethra" EXACT []
synonym: "internal sphincter of urethra" EXACT []
synonym: "internal urethral sphincter muscle" EXACT []
synonym: "musculus sphincter supracollicularis" EXACT [FMA:45769, FMA:TA]
synonym: "musculus sphincter urethrae internus" EXACT [FMA:45769, FMA:TA]
synonym: "preprostatic sphincter" EXACT [FMA:45769]
synonym: "sphincter urethrae internus" EXACT [FMA:45769, FMA:TA]
synonym: "supracollicular sphincter" EXACT [FMA:45769]
xref: FMA:45769
xref: SCTID:277856008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004917 ! urethral sphincter
relationship: part_of UBERON:0000057 ! urethra

[Term]
id: UBERON:0004919
name: external urethral sphincter
namespace: uberon
def: "." [Wikipedia:External_sphincter_muscle_of_female_urethra, Wikipedia:External_sphincter_muscle_of_male_urethra]
comment: TODO male/female subclasses
synonym: "external sphincter muscle of urethra" EXACT []
synonym: "external sphincter of urethra" EXACT []
synonym: "external urethral sphincter muscle" EXACT []
xref: FMA:85274
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004917 ! urethral sphincter
relationship: part_of UBERON:0000057 ! urethra

[Term]
id: UBERON:0004921
name: subdivision of digestive tract
namespace: uberon
comment: intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct. we include pharynx, esophagus here, we may want an additional term for major subdivisions (fore/mid/hind vs upper/lower)
synonym: "alimentary system subdivision" EXACT [FMA:71131]
synonym: "subdivision of alimentary system" EXACT [FMA:71131]
xref: FBbt:00100315
xref: FMA:71131
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004185 ! endodermal gut
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0004923
name: organ component layer
namespace: uberon
xref: FMA:82485
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part

[Term]
id: UBERON:0004996
name: mucosa of cardia of stomach
namespace: uberon
def: "A mucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardia of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardia of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardial part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastric cardia mucous membrane" EXACT [OBOL:automatic]
synonym: "gastric cardia organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucous membrane of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardia of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "organ mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa of organ" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucous membrane" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach cardiac region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17456
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001199 ! mucosa of stomach
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach

[Term]
id: UBERON:0004998
name: mucosa of pylorus
namespace: uberon
def: "A mucosa that is part of a pylorus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pylorus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucous membrane of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of pylorus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "organ mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of pylorus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa of organ" EXACT [OBOL:automatic]
synonym: "pylorus mucous membrane" EXACT [OBOL:automatic]
synonym: "pylorus organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach pyloric region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17461
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001199 ! mucosa of stomach
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0001166 ! pylorus

[Term]
id: UBERON:0005019
name: mucosa of palate
namespace: uberon
def: "A mucosa that is part of a palate [Obol]." [OBOL:automatic]
synonym: "mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of palate" EXACT [OBOL:automatic]
synonym: "mucosa of organ of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral roof" EXACT [OBOL:automatic]
synonym: "mucous membrane of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of roof of mouth" EXACT [OBOL:automatic]
synonym: "oral roof mucosa" EXACT [OBOL:automatic]
synonym: "oral roof mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral roof mucous membrane" EXACT [OBOL:automatic]
synonym: "oral roof organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "organ mucosa of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "palate mucosa" EXACT [OBOL:automatic]
synonym: "palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "palate mucous membrane" EXACT [OBOL:automatic]
synonym: "palate organ mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59765
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003729 ! mouth mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001716 ! secondary palate
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0005024
name: mucosa of soft palate
namespace: uberon
def: "A mucosa that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of soft palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of soft palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate mucosa" EXACT [OBOL:automatic]
synonym: "soft palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "soft palate mucous membrane" EXACT [OBOL:automatic]
synonym: "soft palate organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59784
xref: SCTID:245842003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005019 ! mucosa of palate
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001733 ! soft palate
relationship: part_of UBERON:0001733 ! soft palate

[Term]
id: UBERON:0005025
name: mucosa of uvula
namespace: uberon
def: "A mucosa that is part of a uvula [Obol]." [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa of organ" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucous membrane" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "uvula mucosa" EXACT [OBOL:automatic]
synonym: "uvula mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula of palate mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate organ mucosa" EXACT [OBOL:automatic]
synonym: "uvula organ mucosa" EXACT [OBOL:automatic]
xref: FMA:60030
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005024 ! mucosa of soft palate
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001734 ! uvula
relationship: part_of UBERON:0001734 ! uvula

[Term]
id: UBERON:0005042
name: inner epithelial layer of tympanic membrane
namespace: uberon
def: "A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [PMID:11237469, UBERON:cjm]
comment: AO notes: in FMA this is classified as a mucosa
synonym: "mucosa of tympanic membrane" EXACT [FMA:56844]
synonym: "mucous layer of tympanic membrane" EXACT [FMA:56844]
synonym: "mucous stratum of tympanic membrane" EXACT [FMA:56844]
synonym: "tympanic membrane external middle ear cavity epithelial component" EXACT [UBERON:cjm]
xref: FMA:56844
xref: SCTID:36411006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0009647 ! tympanic membrane epithelium
intersection_of: UBERON:0009647 ! tympanic membrane epithelium
intersection_of: part_of UBERON:0010063 ! tympanic cavity epithelium
relationship: part_of UBERON:0010063 ! tympanic cavity epithelium

[Term]
id: UBERON:0005046
name: mucosa of hard palate
namespace: uberon
def: "A mucosa that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mucosa" EXACT [OBOL:automatic]
synonym: "hard palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "hard palate mucous membrane" EXACT [OBOL:automatic]
synonym: "hard palate organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hard palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of hard palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of hard palate" EXACT [OBOL:automatic]
xref: FMA:59783
xref: SCTID:245841005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005019 ! mucosa of palate
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0005051
name: mediastinum testis
namespace: uberon
def: "The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]" [Wikipedia:Mediastinum_testis]
synonym: "body of highmore" EXACT [FMA:19812]
synonym: "mediastinum of testis" EXACT [FMA:19812]
synonym: "testis mediastinum" EXACT [FMA:19812]
xref: EMAPA:18331
xref: FMA:19812
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png
xref: SCTID:362279007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: has_part UBERON:0002384 ! connective tissue
relationship: overlaps UBERON:0003728 ! mediastinum
relationship: part_of UBERON:0000473 ! testis
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005055
name: zone of long bone
namespace: uberon
def: "An organ part that is part of a long bone [Obol]." [OBOL:automatic]
subset: uberon_slim
synonym: "long bone zone" EXACT []
xref: FMA:24008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
intersection_of: UBERON:0005913 ! zone of bone organ
intersection_of: part_of UBERON:0002495 ! long bone
relationship: part_of UBERON:0002495 ! long bone

[Term]
id: UBERON:0005056
name: external female genitalia
namespace: uberon
def: "An external reproductive organ that is part of a female reproductive system [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "external female genital organ" EXACT [BTO:0003100]
synonym: "external genitalia of female reproductive system" EXACT [OBOL:automatic]
synonym: "female external genitalia" EXACT [FMA:45649]
synonym: "organa genitalia feminina externa" RELATED [BTO:0003100]
xref: BTO:0003100
xref: EMAPA:30984
xref: FMA:45649
xref: galen:FemaleExternalGenitalia
xref: SCTID:362234008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003134 ! female reproductive organ
is_a: UBERON:0004176 ! external reproductive organ
intersection_of: UBERON:0004176 ! external reproductive organ
intersection_of: part_of UBERON:0000474 ! female reproductive system
disjoint_from: UBERON:0009196 ! indifferent external genitalia
relationship: part_of UBERON:0000474 ! female reproductive system

[Term]
id: UBERON:0005057
name: immune organ
namespace: uberon
def: "An organ that is part of a immune system [Obol]." [OBOL:automatic]
subset: organ_slim
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002405 ! immune system
relationship: part_of UBERON:0002405 ! immune system

[Term]
id: UBERON:0005058
name: hemolymphoid system gland
namespace: uberon
def: "A gland that is part of a hemolymphoid system [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "hemopoietic or lymphoid gland" EXACT [GOC:cjm]
synonym: "hemopoietic or lymphoid organ" BROAD [GO:0048534]
xref: MA:0002962
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002530 ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002193 ! hemolymphoid system
relationship: part_of UBERON:0002193 ! hemolymphoid system

[Term]
id: UBERON:0005062
name: neural fold
namespace: uberon
def: "One of the two elevated edges of the neural groove." [GO:0001842, MP:0011256]
synonym: "medullary fold" EXACT [MP:0011256]
xref: EHDAA2:0001249
xref: EMAPA:16090
xref: EMAPA:16093
xref: EMAPA:16142
xref: EMAPA:16146
xref: EMAPA:16151
xref: EMAPA:16155
xref: EMAPA:16159
xref: EMAPA:16162
xref: EMAPA:16288
xref: EMAPA:16292
xref: EMAPA:16295
xref: EMAPA:16299
xref: EMAPA:16303
xref: EMAPA:16307
xref: EMAPA:16528
xref: ncithesaurus:Neural_Fold
xref: SCTID:361461009
xref: XAO:0004087
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005157 ! epithelial fold
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003075 ! neural plate

[Term]
id: UBERON:0005063
name: left ventricular compact myocardium
namespace: uberon
def: "." [GO:0003224]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004127 ! compact layer of ventricle
intersection_of: UBERON:0004127 ! compact layer of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle

[Term]
id: UBERON:0005064
name: left ventricular trabecular myocardium
namespace: uberon
def: "." [GO:0003225]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle

[Term]
id: UBERON:0005065
name: right ventricular compact myocardium
namespace: uberon
def: "." [GO:0003226]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004127 ! compact layer of ventricle
intersection_of: UBERON:0004127 ! compact layer of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle

[Term]
id: UBERON:0005066
name: right ventricular trabecular myocardium
namespace: uberon
def: "." [GO:0003227]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle

[Term]
id: UBERON:0005068
name: neural rod
namespace: uberon
def: "a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133]
xref: EFO:0003498
xref: TAO:0000133
xref: ZFA:0000133
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: develops_from UBERON:0007135 ! neural keel
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005080
name: metanephric ureteric bud
namespace: uberon
def: "the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros[GO]." [GO:0035502]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000084 ! ureteric bud
is_a: UBERON:0007497 ! developing epithelial placode
intersection_of: UBERON:0000084 ! ureteric bud
intersection_of: develops_into UBERON:0000081 ! metanephros
relationship: develops_into UBERON:0000081 ! metanephros

[Term]
id: UBERON:0005081
name: ureter ureteric bud
namespace: uberon
def: "The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]." [GO:0035503]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000084 ! ureteric bud
is_a: UBERON:0007497 ! developing epithelial placode
intersection_of: UBERON:0000084 ! ureteric bud
intersection_of: develops_into UBERON:0000056 ! ureter
relationship: develops_into UBERON:0000056 ! ureter

[Term]
id: UBERON:0005082
name: tube lumen
namespace: uberon
def: "A hole in a tube[GO]." [GO:0060609]
xref: AEO:0000078
xref: EHDAA2:0004618
xref: RETIRED_EHDAA2:0003078
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0000025 ! tube
relationship: surrounded_by UBERON:0000025 ! tube

[Term]
id: UBERON:0005085
name: ectodermal placode
namespace: uberon
def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788]
comment: Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
intersection_of: UBERON:0001048 ! primordium
intersection_of: part_of UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0000924 ! ectoderm

[Term]
id: UBERON:0005086
name: hair follicle placode
namespace: uberon
def: "An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud[GO]." [GO:0060789]
synonym: "hair gem" RELATED [ISBN:9780878932504]
synonym: "hair peg" RELATED [ISBN:9780878932504]
synonym: "vibrissa placode" NARROW []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0002073 ! hair follicle
relationship: develops_from UBERON:0001003 ! epidermis
relationship: develops_into UBERON:0002073 ! hair follicle

[Term]
id: UBERON:0005087
name: tooth placode
namespace: uberon
def: "An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]." [GO:0060790]
synonym: "dental placode" EXACT [Obol:automatic]
synonym: "dental primordium" EXACT [ZFA:0001153]
synonym: "odontogenic placode" EXACT [Obol:automatic]
synonym: "tooth germ" EXACT [ZFA:0001153]
xref: BTO:0001511
xref: MESH:A.14.254.900.720
xref: TAO:0001153
xref: ZFA:0001153
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 {source="ZFA"} ! tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0001091 ! calcareous tooth
relationship: develops_into UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003351 {source="ZFA"} ! pharyngeal epithelium

[Term]
id: UBERON:0005090
name: muscle structure
namespace: uberon
def: "Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]." [GO:0061061]
xref: FBbt:00005073
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0005091
name: left horn of sinus venosus
namespace: uberon
xref: EHDAA2:0001840
xref: EHDAA:482
xref: EMAPA:16238
xref: FMA:70321
xref: VHOG:0000488
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_left_side_of UBERON:0002063 ! sinus venosus

[Term]
id: UBERON:0005092
name: right horn of sinus venosus
namespace: uberon
xref: EHDAA2:0001841
xref: EHDAA:484
xref: EMAPA:16239
xref: FMA:70318
xref: VHOG:0000489
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_right_side_of UBERON:0002063 ! sinus venosus

[Term]
id: UBERON:0005095
name: kidney rudiment
namespace: uberon
def: "." [GO:0072003]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0007687 {source="GO"} ! kidney field
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005103
name: mesonephric epithelium
namespace: uberon
def: "An epithelium that is part of a mesonephros [Obol]." [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004819 ! kidney epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros

[Term]
id: UBERON:0005109
name: metanephric smooth muscle tissue
namespace: uberon
def: "Any smooth muscle tissue that is part of a metanephros." [GO:0072208, UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005321 ! mesonephric smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros

[Term]
id: UBERON:0005153
name: epithelial bud
namespace: uberon
def: "A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005157 ! epithelial fold

[Term]
id: UBERON:0005154
name: epithelial cord
namespace: uberon
comment: TODO - add superclass of developing structure
xref: EHDAA2:0004052
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium

[Term]
id: UBERON:0005156
name: reproductive structure
namespace: uberon
def: "An anatomical structure that is part of the reproductive system." [GOC:cjm]
synonym: "reproductive system structure" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0000990 ! reproductive system

[Term]
id: UBERON:0005157
name: epithelial fold
namespace: uberon
def: "An epithelial sheet bent on a linear axis." [GO:0060571]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium

[Term]
id: UBERON:0005162
name: multi-cell-component structure
namespace: uberon
def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000]
subset: upper_level
xref: AAO:0011000
xref: CARO:0001000
xref: FBbt:00007060
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0005171
name: hepatic duct
namespace: uberon
def: "The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same
subset: vertebrate_core
xref: EHDAA2:0000741
xref: EHDAA:3049
xref: EMAPA:16843
xref: EMAPA:18672
xref: galen:HepaticDuct
xref: MA:0000357
xref: ncithesaurus:Hepatic_Duct
xref: OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA
xref: SCTID:245399002
xref: TAO:0001100
xref: VHOG:0000219
xref: ZFA:0001100
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002394 ! bile duct
relationship: continuous_with UBERON:0002107 ! liver
relationship: part_of UBERON:0001173 ! biliary tree

[Term]
id: UBERON:0005172
name: abdomen organ
namespace: uberon
def: "An organ that is part of an abdomen [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000522
xref: SCTID:272631008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005173 ! abdominal segment organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen

[Term]
id: UBERON:0005173
name: abdominal segment organ
namespace: uberon
xref: MA:0000529
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005177 ! trunk organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk

[Term]
id: UBERON:0005174
name: back organ
namespace: uberon
def: "An organ that is part of a back [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0001901
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005177 ! trunk organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0005175
name: chest organ
namespace: uberon
def: "An organ that is part of a chest [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000552
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005181 ! thoracic segment organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest

[Term]
id: UBERON:0005176
name: tooth enamel organ
namespace: uberon
def: "Epithelial cells surrounding the dental papilla and differentiated into three layers: the inner enamel epithelium, consisting of ameloblasts which eventually form the enamel, and the enamel pulp and external enamel epithelium, both of which atrophy and disappear before and upon eruption of the tooth, respectively[MESH]." [MESH:A.14.254.900.720.265, Wikipedia:Enamel_organ]
comment: Development notes: NOT develeops_from NC[UBERONREF:0000002]. Alternate definitioon: A cellular aggregation seen in histologic sections of a developing tooth. It lies above a condensation of ectomesenchymal cells called the dental papilla. Historically, enamel organ has been the term to describe this structure, but it was attempted unsuccessfully in recent years to change the name to dental organ in order to better represent its multiple functions apart from enamel formation[WP]
subset: vertebrate_core
synonym: "dental organ" EXACT [ZFA:0005138]
synonym: "enamel organ" EXACT [MP:0010747]
xref: BTO:0001722
xref: MA:0001604
xref: MESH:A.14.254.900.720.265
xref: SCTID:362863002
xref: TAO:0005138
xref: ZFA:0005138
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000924 {source="BTO"} ! ectoderm
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005087 {source="BTO"} ! tooth placode
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0005087 {source="ZFA"} ! tooth placode
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest

[Term]
id: UBERON:0005177
name: trunk organ
namespace: uberon
def: "An organ that is part of a trunk [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000516
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0005178
name: thoracic cavity organ
namespace: uberon
def: "An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic]
xref: MA:0000557
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005181 ! thoracic segment organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity

[Term]
id: UBERON:0005179
name: pelvis organ
namespace: uberon
def: "An organ that is part of the pelvic region[Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000543
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005173 ! abdominal segment organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis

[Term]
id: UBERON:0005181
name: thoracic segment organ
namespace: uberon
synonym: "upper body organ" RELATED [MA:0000563]
xref: MA:0000563
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005177 ! trunk organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0005193
name: ethmoidal artery
namespace: uberon
def: "An artery that is part of a ethmoid [Obol]." [OBOL:automatic]
xref: MA:0001949
xref: ncithesaurus:Ethmoidal_Artery
xref: SCTID:244222007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001679 ! ethmoid
relationship: part_of UBERON:0001679 ! ethmoid

[Term]
id: UBERON:0005208
name: right atrium valve
namespace: uberon
def: "A valve that is part of a right atrium [Obol]." [OBOL:automatic]
synonym: "right atrium valves" RELATED PLURAL [EHDAA2:0000302]
synonym: "valve of right atrium" EXACT [EMAPA:17327]
xref: EHDAA2:0000302
xref: EMAPA:17327
xref: MA:0001871
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003978 ! valve
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0003978 ! valve
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0002078 ! right atrium

[Term]
id: UBERON:0005236
name: osseus labyrinth vestibule
namespace: uberon
def: "A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear." [BTO:0003382, Wikipedia:Vestibule_of_the_ear]
synonym: "bony labyrinth vestibule" EXACT []
synonym: "inner ear vestibule" RELATED [BTO:0003382]
synonym: "inner ear vestibulum" EXACT [BTO:0003382]
synonym: "osseous labyrinth vestibule" EXACT [Obol:automatic]
synonym: "vestibular apparatus" RELATED [GAID:881]
synonym: "vestibule" BROAD [XAO:0000199]
synonym: "vestibule of bony labyrinth" EXACT [FMA:60183]
xref: AAO:0000984
xref: BTO:0003382
xref: EV:0100366
xref: FMA:60183
xref: GAID:881
xref: MA:0001185
xref: MESH:A.09.246.631.909
xref: ncithesaurus:Vestibule
xref: SCTID:181188003
xref: VHOG:0001220
xref: XAO:0000199
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001839 ! bony labyrinth

[Term]
id: UBERON:0005238
name: tensor tympani muscle
namespace: uberon
def: "A muscle organ that is part of a tensor tympani [Obol]." [OBOL:automatic]
xref: EHDAA2:0002002
xref: EMAPA:18587
xref: MESH:A.02.633.567.975
xref: SCTID:244779001
xref: VHOG:0000698
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001600 ! tensor tympani
relationship: part_of UBERON:0001600 ! tensor tympani

[Term]
id: UBERON:0005239
name: basal plate metencephalon
namespace: uberon
synonym: "metencephalon basal plate" EXACT [EHDAA2:0001154]
xref: EHDAA2:0001154
xref: EMAPA:17078
xref: VHOG:0000320
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004064 ! basal plate

[Term]
id: UBERON:0005248
name: bulbus cordis myocardium
namespace: uberon
def: "A myocardium that is part of a bulbus cordis [Obol]." [OBOL:automatic]
xref: VHOG:0000609
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002349 ! myocardium
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0004706 ! bulbus cordis
relationship: part_of UBERON:0004706 ! bulbus cordis

[Term]
id: UBERON:0005253
name: head mesenchyme
namespace: uberon
def: "Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260]
subset: vertebrate_core
synonym: "cephalic mesenchyme" EXACT [MP:0011260]
xref: EFO:0003492
xref: EHDAA2:0000732
xref: EHDAA:179
xref: EMAPA:16098
xref: EMAPA:16269
xref: TAO:0000113
xref: VHOG:0000332
xref: ZFA:0000113
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 {source="ZFA"} ! mesenchyme
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0005254
name: upper leg mesenchyme
namespace: uberon
def: "A mesenchyme that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: EHDAA2:0002132
xref: EMAPA:17501
xref: VHOG:0000506
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003860 ! hindlimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod

[Term]
id: UBERON:0005255
name: foot digit mesenchyme
namespace: uberon
def: "A mesenchyme that is part of a toe [Obol]." [OBOL:automatic]
synonym: "toe mesenchyme" EXACT []
xref: VHOG:0000463
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003860 ! hindlimb mesenchyme
is_a: UBERON:0010702 ! digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: develops_from UBERON:0003328 {source="EHDAA2"} ! mesenchyme of footplate
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0005256
name: trunk mesenchyme
namespace: uberon
subset: vertebrate_core
xref: EFO:0003485
xref: EHDAA2:0002092
xref: EHDAA:377
xref: EMAPA:16177
xref: TAO:0000081
xref: VHOG:0000281
xref: ZFA:0000081
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0005257
name: hand digit mesenchyme
namespace: uberon
def: "A mesenchyme that is part of a finger [Obol]." [OBOL:automatic]
comment: Editor notes: In EHDAA2, the metacarpal cartilage condensation is considered part of the digits - it might be better to call the whole structure digital ray mesenchyme/condensation
synonym: "anterior limb digital ray mesenchyme" RELATED [UBERON:cjm]
synonym: "finger mesenchyme" EXACT []
synonym: "hand digital ray mesenchyme" RELATED [UBERON:cjm]
xref: EHDAA2:0000407
xref: VHOG:0001416
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003859 ! forelimb mesenchyme
is_a: UBERON:0010702 ! digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: develops_from UBERON:0009523 ! mesenchyme of handplate
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0005258
name: upper arm mesenchyme
namespace: uberon
def: "A mesenchyme that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
xref: EHDAA2:0002114
xref: EMAPA:17426
xref: VHOG:0000505
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003859 ! forelimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod

[Term]
id: UBERON:0005259
name: lower leg mesenchyme
namespace: uberon
def: "A mesenchyme that is part of a lower leg [Obol]." [OBOL:automatic]
xref: EHDAA2:0001032
xref: EMAPA:17498
xref: VHOG:0000752
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003860 ! hindlimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0005291
name: embryonic tissue
namespace: uberon
def: "A portion of tissue that is part of an embryo." [OBOL:automatic]
synonym: "developing tissue" RELATED []
synonym: "portion of embryonic tissue" EXACT [OBOL:automatic]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0002050 ! embryonic structure
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002050 ! embryonic structure

[Term]
id: UBERON:0005294
name: genital ridge
namespace: uberon
def: "The precursor to the gonads." [Wikipedia:Gonadal_ridge]
comment: TODO - check developmental relationships. merge with urogenital ridge?
synonym: "gonadal ridge" EXACT [Wikipedia:Gonadal_ridge]
xref: AAO:0011047
xref: EHDAA2:0004044
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1106.png/200px-Gray1106.png
xref: ncithesaurus:Gonadal_Ridge
xref: SCTID:361399001
xref: XAO:0000018
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004876 ! urogenital ridge
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004122 ! genitourinary system

[Term]
id: UBERON:0005295
name: sex cord
namespace: uberon
def: "Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://www.answers.com/topic/sex-cord, Wikipedia:Sex_cords]
synonym: "primitive sex cord" RELATED []
xref: EHDAA2:0004051
xref: RETIRED_EHDAA2:0001523
xref: SCTID:343823004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005154 {source="EHDAA2"} ! epithelial cord
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0005294 ! genital ridge
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005297
name: testis sex cord
namespace: uberon
def: "The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
comment: check primary vs testis
synonym: "primary sex cord" RELATED []
synonym: "testis cord" EXACT [MP:0006424]
synonym: "testis primary sex cords" EXACT [EHDAA2:0002011]
synonym: "testis primitive sex cord" RELATED []
xref: EHDAA2:0002011
xref: EHDAA:8152
xref: EMAPA:29098
xref: VHOG:0001321
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004910 ! epithelium of male gonad
is_a: UBERON:0005295 ! sex cord
intersection_of: UBERON:0005295 ! sex cord
intersection_of: part_of UBERON:0000473 ! testis
relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad
relationship: part_of UBERON:0000473 ! testis

[Term]
id: UBERON:0005311
name: mammary placode
namespace: uberon
def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
comment: TODO develops_from
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge

[Term]
id: UBERON:0005321
name: mesonephric smooth muscle tissue
namespace: uberon
def: "." [GO:0061214]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney

[Term]
id: UBERON:0005333
name: mammary bud
namespace: uberon
alt_id: UBERON:0004181
def: "Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]." [GO:0060648, http://medical-dictionary.thefreedictionary.com/mammary+bud]
synonym: "mammary gland bud" EXACT [GO:0060648]
synonym: "milk bud" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005153 ! epithelial bud
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005311 ! mammary placode
relationship: part_of UBERON:0000076 {source="PMID:20484386"} ! external ectoderm

[Term]
id: UBERON:0005337
name: outflow tract of ventricle
namespace: uberon
def: "A ventricular outflow tract is a portion of either the left ventricle or right ventricle of the heart through which blood passes in order to enter the great arteries. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]." [Wikipedia:Ventricular_outflow_tract]
synonym: "heart ventricle outflow tract" EXACT [MP:0010224]
synonym: "outflow part of ventricle" EXACT []
synonym: "ventricular outflow tract" EXACT [Wikipedia:Ventricular_outflow_tract]
xref: FMA:13225
xref: XAO:0004140
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004145 ! outflow tract
intersection_of: UBERON:0004145 ! outflow tract
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle

[Term]
id: UBERON:0005342
name: malleus head
namespace: uberon
def: "rounded portion of the malleus that articulates with the body of the incus[MP]." [MP:0008379]
synonym: "head of malleus" EXACT [FMA:52761]
xref: FMA:52761
xref: MA:0002987
xref: SCTID:368926004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001689 ! malleus

[Term]
id: UBERON:0005352
name: spermatic cord
namespace: uberon
def: "the cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. cord-like structure in males formed by the vas deferens and surrounding tissue that run from the abdomen down to each testicle[WP]." [MP:0010145, Wikipedia:Spermatic_cord]
synonym: "funiculus spermaticus" RELATED []
synonym: "spermatic chord" RELATED []
xref: FMA:19937
xref: GAID:395
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MESH:A.05.360.444.777
xref: ncithesaurus:Spermatic_Cord
xref: SCTID:181433005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0004054 ! internal male genitalia

[Term]
id: UBERON:0005354
name: malleus processus brevis
namespace: uberon
def: "the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001689 ! malleus

[Term]
id: UBERON:0005355
name: malleus neck
namespace: uberon
def: "the narrow contracted section of the malleus located between the head and the manubrium[MP]." [MP:0010327, Wikipedia:Neck_of_malleus]
synonym: "neck of malleus" EXACT [FMA:52762]
xref: FMA:52762
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png
xref: MA:0002988
xref: SCTID:368927008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001689 ! malleus

[Term]
id: UBERON:0005388
name: photoreceptor array
namespace: uberon
def: "An array of photoreceptors and any supporting cells found in an eye." [UBERON:cjm]
synonym: "light-sensitive tissue" EXACT []
xref: FBbt:00004200
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
relationship: part_of UBERON:0000970 ! eye

[Term]
id: UBERON:0005389
name: transparent eye structure
namespace: uberon
comment: transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array
synonym: "lens" NARROW []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000970 ! eye

[Term]
id: UBERON:0005399
name: male reproductive gland
namespace: uberon
subset: organ_slim
xref: BTO:0000080
xref: MA:0000399
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003937 ! sex gland
intersection_of: UBERON:0003937 ! sex gland
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system

[Term]
id: UBERON:0005404
name: frontonasal suture
namespace: uberon
alt_id: UBERON:MA_0002973-FMA_52948
def: "A suture between frontal and nasal bones" [GO:0097095, PMID:12416537]
synonym: "frontonasal suture of skull" EXACT [FMA:52948]
xref: FMA:52948
xref: MA:0002973
xref: SCTID:368982004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009198 {source="GO"} ! craniofacial suture
relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone
relationship: adjacent_to UBERON:0001681 ! nasal bone

[Term]
id: UBERON:0005409
name: gastrointestinal system
namespace: uberon
comment: note that many anatomy ontologies consider this synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class. We have one entity that is part of both gastrointestinal and hepatobiliary systems: hepatopancreatic ampulla
synonym: "alimentary system" RELATED [MA:0000323]
synonym: "alimentary tract" RELATED [MA:0000323]
synonym: "gastro-intestinal system" RELATED [FMA:71132]
synonym: "gastrointestinal (GI) tract" RELATED [GAID:294]
synonym: "gastrointestinal system" RELATED [FMA:71132]
synonym: "gastrointestinal tract" RELATED INCONSISTENT [FMA:71132]
synonym: "GI tract" RELATED [GAID:294]
xref: BTO:0000058
xref: EHDAA2:0000110
xref: EHDAA:514
xref: EMAPA:16246
xref: EV:0100056
xref: FMA:71132
xref: GAID:294
xref: MA:0000323
xref: MESH:A.03.492
xref: ncithesaurus:Gastrointestinal_System
xref: SCTID:373871007
xref: VHOG:0000412
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0005410
name: cartilaginous otic capsule
namespace: uberon
comment: in elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans). todo - check EMAPA
subset: vertebrate_core
synonym: "auditory capsule" EXACT [ZFA:0001500]
xref: EMAPA:18803
xref: TAO:0001500
xref: ZFA:0001500
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003932 ! chondrocranium cartilage
is_a: UBERON:0004637 ! otic capsule

[Term]
id: UBERON:0005411
name: bony otic capsule
namespace: uberon
comment: in elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)
xref: MA:0000252
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004637 ! otic capsule
relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule

[Term]
id: UBERON:0005417
name: forelimb bud
namespace: uberon
def: "A limb bud that develops into a forelimb." [OBOL:automatic]
comment: Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995)
synonym: "anterior limb bud" EXACT [SCTID:346062002]
synonym: "arm bud" RELATED []
synonym: "limb bud - forelimb" EXACT [MIAA:0000065]
synonym: "upper limb bud" EXACT [RETIRED_EHDAA2:0003198]
xref: AAO:0010381
xref: BTO:0001645
xref: EHDAA:1699
xref: EMAPA:16406
xref: MIAA:0000065
xref: RETIRED_EHDAA2:0003198
xref: SCTID:346062002
xref: XAO:0003065
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004347 ! limb bud
is_a: UBERON:0005419 ! forelimb/pectoral fin bud
intersection_of: UBERON:0004347 ! limb bud
intersection_of: develops_into UBERON:0002102 ! forelimb
relationship: develops_into UBERON:0002102 ! forelimb
relationship: part_of UBERON:0000153 ! anterior region of body

[Term]
id: UBERON:0005418
name: hindlimb bud
namespace: uberon
def: "A limb bud that develops into a hindlimb." [OBOL:automatic]
comment: Genes: Tbx4 specifies hindlimbs. Wnt8c restricts Fgf10 in chick.
synonym: "hind limb bud" EXACT [XAO:0003066]
synonym: "leg bud" RELATED []
synonym: "limb bud - hindlimb" RELATED []
synonym: "posterior limb bud" EXACT [SCTID:346164003]
xref: AAO:0010382
xref: EHDAA:2358
xref: EMAPA:16779
xref: MIAA:0000256
xref: RETIRED_EHDAA2:0003197
xref: SCTID:346164003
xref: XAO:0003066
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004347 ! limb bud
is_a: UBERON:0005420 ! hindlimb/pelvic fin bud
intersection_of: UBERON:0004347 ! limb bud
intersection_of: develops_into UBERON:0002103 ! hindlimb
intersection_of: part_of UBERON:0000154 ! posterior region of body
relationship: develops_into UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0005419
name: forelimb/pectoral fin bud
namespace: uberon
def: "A limb bud that develops into a forelimb or pectoral fin." [OBOL:automatic]
comment: at this time we have no need to name a more specific 'pectoral fin bud' class, but we may in future
xref: TAO:0000141
xref: VHOG:0001259
xref: ZFA:0000141
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004357 ! limb/fin bud
intersection_of: UBERON:0004357 ! limb/fin bud
intersection_of: develops_into UBERON:0004710 ! pectoral appendage
relationship: develops_from UBERON:0005729 ! forelimb/pectoral fin field
relationship: develops_into UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0000153 ! anterior region of body

[Term]
id: UBERON:0005420
name: hindlimb/pelvic fin bud
namespace: uberon
def: "A limb bud that develops into a hindlimb or pelvic fin." [OBOL:automatic]
comment: at this time we have no need to name a more specific 'pelvic fin bud' class, but we may in future
xref: TAO:0001384
xref: VHOG:0001260
xref: ZFA:0001384
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004357 ! limb/fin bud
intersection_of: UBERON:0004357 ! limb/fin bud
intersection_of: develops_into UBERON:0004709 ! pelvic appendage
intersection_of: part_of UBERON:0000154 ! posterior region of body
relationship: develops_from UBERON:0005730 ! hindlimb/pelvic fin field
relationship: develops_into UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0005423
name: developing anatomical structure
namespace: uberon
synonym: "developing structure" RELATED []
synonym: "developmental structure" RELATED []
synonym: "developmental tissue" RELATED [MIAA:0000019]
xref: AEO:0000125
xref: EHDAA2:0003125
xref: FBbt:00007006
xref: MIAA:0000019
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000465 ! material anatomical entity

[Term]
id: UBERON:0005425
name: presumptive neural retina
namespace: uberon
def: "Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator]
subset: vertebrate_core
synonym: "inner layer optic cup" EXACT [ZFA:0001071]
synonym: "optic cup inner layer" EXACT [EHDAA2:0001304]
synonym: "presumptive retinas" EXACT PLURAL [ZFA:0001071]
xref: EHDAA2:0001304
xref: EMAPA:16675
xref: TAO:0001071
xref: VHOG:0000490
xref: ZFA:0001071
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
relationship: part_of UBERON:0003072 ! optic cup

[Term]
id: UBERON:0005426
name: lens vesicle
namespace: uberon
def: "Portion of tissue that gives rise to the lens." [https://sourceforge.net/tracker/?func=detail&atid=994726&aid=3514998&group_id=76834, ZFIN:curator]
comment: Development notes: the lens of zebrafish (and other teleosts) forms from delamination of cells from the lens placode; thus, there is no formation of a hollow lens vesicle, in contrast to the situation in mammals and birds (Glass and Dahm, 2004) [PMID:16496288] The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24b26 hpf is accomplished in part by apoptosis, similar to mammals[ZFA]
subset: vertebrate_core
synonym: "hollow lens vesicle" NARROW SENSU []
synonym: "solid lens vesicle" NARROW SENSU [ZFA:0001679]
xref: EHDAA2:0000983
xref: EHDAA:4737
xref: EMAPA:17163
xref: SCTID:361510002
xref: TAO:0002205
xref: VHOG:0001163
xref: ZFA:0001679
xref: ZFIN:ZDB-ANAT-090226-2
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003073 ! lens placode

[Term]
id: UBERON:0005432
name: aortic sac
namespace: uberon
def: "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]." [http://medical-dictionary.thefreedictionary.com/aortic+sac]
xref: EHDAA2:0004145
xref: EHDAA:9826
xref: FMA:71008
xref: RETIRED_EHDAA2:0000133
xref: SCTID:361527005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 {source="EHDAA2"} ! artery
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003498 ! heart blood vessel
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0004363 {source="EHDAA2"} ! aortic arch
relationship: part_of UBERON:0004145 ! outflow tract

[Term]
id: UBERON:0005434
name: cervical region
namespace: uberon
synonym: "cervical region" EXACT [FMA:24219]
synonym: "neck subdivision" EXACT [FMA:24219]
synonym: "region of neck" EXACT [FMA:24219]
synonym: "subdivision of neck" EXACT [FMA:24219]
xref: FMA:24219
xref: SCTID:123958008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000974 ! neck

[Term]
id: UBERON:0005441
name: external intercostal muscle
namespace: uberon
def: "The Intercostales externi (External intercostals) are eleven in number on either side. They extend from the tubercles of the ribs behind, to the cartilages of the ribs in front, where they end in thin membranes, the anterior intercostal membranes, which are continued forward to the sternum. Each arises from the lower border of a rib, and is inserted into the upper border of the rib below. In the two lower spaces they extend to the ends of the cartilages, and in the upper two or three spaces they do not quite reach the ends of the ribs. They are thicker than the Intercostales interni, and their fibers are directed obliquely downward and laterally on the back of the thorax, and downward, forward, and medially on the front (the example is often used of sticking one's hands in their pocket and noting the direction of the fingers pointing downward and medially)." [Wikipedia:External_intercostal_muscles]
synonym: "external intercostal muscle" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "external intercostals" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "intercostal muscle external layer" RELATED [MA:0002325]
synonym: "intercostales externi" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "intercostales externi muscle" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "intercostales externi muscles" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "intercostales externus" EXACT [MA:0002325]
synonym: "intercostalis externus" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "intercostals external" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "intercostals external muscle" RELATED [Wikipedia:External_intercostal_muscles]
synonym: "musculi intercostales externi" RELATED [Wikipedia:External_intercostal_muscles]
xref: EHDAA2:0000465
xref: EHDAA:8260
xref: FMA:9756
xref: MA:0002325
xref: ncithesaurus:External_Intercostal_Muscle
xref: SCTID:244878003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001111 {source="FMA"} ! intercostal muscle
relationship: develops_from UBERON:0010974 {source="EHDAA2"} ! external intercostal pre-muscle mass

[Term]
id: UBERON:0005442
name: external oblique
namespace: uberon
def: "The external oblique muscle (of the abdomen) (also external abdominal oblique muscle) is the largest and the most superficial (outermost) of the three flat muscles of the lateral anterior abdomen." [Wikipedia:Abdominal_external_oblique_muscle]
subset: organ_slim
synonym: "external abdominal oblique" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "external abdominal oblique muscle" EXACT [FMA:13335]
synonym: "external abdominal oblique muscle" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "external oblique" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "external oblique abdominal muscles" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "external oblique abdominis" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "external oblique abdominis muscle" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "external oblique muscle" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "oblique strength" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "obliquus abdominis externus" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "obliquus externus" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "obliquus externus abdominis" EXACT [MA:0002345]
synonym: "obliquus externus abdominis" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
synonym: "obliquus externus abdominis muscle" RELATED [Wikipedia:Abdominal_external_oblique_muscle]
xref: EHDAA2:0000469
xref: EHDAA:8248
xref: EMAPA:18162
xref: FMA:13335
xref: MA:0002345
xref: ncithesaurus:External_Oblique_Muscle
xref: SCTID:244946005
xref: VHOG:0000788
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002461 {source="FMA"} ! anterior abdominal wall muscle
relationship: develops_from UBERON:0010975 {source="EHDAA2"} ! external oblique pre-muscle mass

[Term]
id: UBERON:0005445
name: segment of foot
namespace: uberon
synonym: "foot region" BROAD [FMA:24993]
synonym: "foot subdivision" EXACT [FMA:24993]
synonym: "regio pedis" EXACT [FMA:24993, FMA:TA]
synonym: "segment of foot" EXACT [FMA:24993]
synonym: "subdivision of foot" EXACT [FMA:24993]
xref: FMA:24993
xref: SCTID:362887000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0005446
name: foramen rotundum
namespace: uberon
def: "The foramen rotundum is a circular hole in the sphenoid bone that connects the middle cranial fossa and the pterygopalatine fossa." [Wikipedia:Foramen_rotundum]
comment: AAO to be checked
synonym: "foramen rotundum of the skull" RELATED [Wikipedia:Foramen_rotundum]
xref: AAO:0000194
xref: EHDAA2:0000552
xref: EHDAA:10629
xref: EMAPA:18712
xref: FMA:53154
xref: SCTID:369439002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: surrounded_by UBERON:0001677 ! sphenoid bone

[Term]
id: UBERON:0005451
name: segment of hand
namespace: uberon
synonym: "hand region" BROAD [FMA:24945]
synonym: "hand subdivision" EXACT [FMA:24945]
synonym: "segment of hand" EXACT [FMA:24945]
synonym: "subdivision of hand" EXACT [FMA:24945]
xref: FMA:24945
xref: SCTID:127950000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
is_a: UBERON:0008785 ! upper limb segment
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0005454
name: internal oblique
namespace: uberon
def: "The internal oblique muscle (of the abdomen) is the intermediate muscle of the abdomen, lying just underneath the external oblique and just above (superficial to) the transverse abdominal muscle." [Wikipedia:Abdominal_internal_oblique_muscle]
subset: organ_slim
synonym: "abdominal internal oblique" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "internal abdominal oblique" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "internal abdominal oblique muscle" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "internal oblique abdominal" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "internal oblique abdominis" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "internal oblique abdominis muscle" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "internal oblique muscle" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "musculus obliquus internus abdominis" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "obliqui internus" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "obliquus internus" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "obliquus internus abdominis" EXACT [MA:0002346]
synonym: "obliquus internus abdominis" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
synonym: "obliquus internus abdominis muscle" EXACT [FMA:13891]
synonym: "obliquus internus abdominis muscle" RELATED [Wikipedia:Abdominal_internal_oblique_muscle]
xref: EHDAA2:0000879
xref: EHDAA:8250
xref: EMAPA:18163
xref: FMA:13891
xref: MA:0002346
xref: ncithesaurus:Internal_Oblique_Muscle
xref: SCTID:244947001
xref: VHOG:0000789
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002461 ! anterior abdominal wall muscle

[Term]
id: UBERON:0005456
name: jugular foramen
namespace: uberon
def: "The jugular foramen is a large aperture in the base of the skull. It is located behind the carotid canal and is formed in front by the petrous portion of the temporal, and behind by the occipital; it is generally larger on the right than on the left side" [Wikipedia:Jugular_foramen]
synonym: "foramen jugulare" RELATED [Wikipedia:Jugular_foramen]
synonym: "Posterior lacerate foramen" EXACT [FMA:56432]
xref: AAO:0000249
xref: EHDAA2:0000893
xref: EHDAA:10631
xref: EMAPA:18713
xref: FMA:56432
xref: ncithesaurus:Jugular_Foramen
xref: SCTID:361735006
xref: VHOG:0001113
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium

[Term]
id: UBERON:0005461
name: levator scapulae
namespace: uberon
def: "The levator scapulae is situated at the back and side of the neck." [Wikipedia:Levator_scapulae_muscle]
synonym: "levator scapul%c3%a6" RELATED [Wikipedia:Levator_scapulae_muscle]
synonym: "levator scapula" RELATED [Wikipedia:Levator_scapulae_muscle]
synonym: "levator scapulae muscle" RELATED [Wikipedia:Levator_scapulae_muscle]
xref: EHDAA2:0000992
xref: EHDAA:8309
xref: FMA:32519
xref: SCTID:279236008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010983 {source="EHDAA2"} ! levator scapulae pre-muscle mass
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0005462
name: lower back
namespace: uberon
def: "Subdivision of abdominal segment of trunk which in humans is demarcated from the front of the abdomen by the posterior surface of the anterior layer of the thoracolumbar fascia and the anterior surface of the lumbar vertebral column; together with the front of the abdomen, it constitutes the abdomen[Modified from FMA]." [FMA:61681]
comment: todo - split lower back from lumbar region?
synonym: "abdominal back" EXACT [FMA:61681]
synonym: "back of abdomen" EXACT [FMA:61681]
synonym: "dorsum of abdomen" EXACT [FMA:61681]
synonym: "lower back" EXACT [MA:0000027]
synonym: "lumbar part of back" EXACT [FMA:61681]
synonym: "lumbar region" BROAD [FMA:61681]
synonym: "lumbar region of back" EXACT [UBERON:cjm]
synonym: "posterior part of abdomen" EXACT [FMA:61681]
synonym: "regio lumbalis" EXACT [FMA:61681, FMA:TA]
xref: FMA:61681
xref: MA:0000027
xref: ncithesaurus:Lumbar_Region
xref: SCTID:182343007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009569 ! subdivision of trunk
relationship: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk

[Term]
id: UBERON:0005467
name: platysma
namespace: uberon
def: "The platysma is a superficial muscle that overlaps the sternocleidomastoid. It is a broad sheet arising from the fascia covering the upper parts of the pectoralis major and deltoid; its fibers cross the clavicle, and proceed obliquely upward and medially along the side of the neck. The anterior fibers interlace, below and behind the symphysis menti, with the fibers of the muscle of the opposite side; the posterior fibers cross the mandible, some being inserted into the bone below the oblique line, others into the skin and subcutaneous tissue of the lower part of the face. Many of these fibers blend with the muscles about the angle and lower part of the mouth. Sometimes fibers can be traced to the zygomaticus, or to the margin of the orbicularis oculi. Beneath the platysma, the external jugular vein descends from the angle of the mandible to the clavicle." [Wikipedia:Platysma_muscle]
synonym: "neck platysma muscle" RELATED [BTO:0005124]
synonym: "platysma cervicale" NARROW []
synonym: "platysma muscle" EXACT [BTO:0005124]
synonym: "platysma myoides" NARROW []
xref: BTO:0005124
xref: EHDAA2:0001474
xref: EHDAA:8270
xref: EMAPA:18190
xref: FMA:45738
xref: ncithesaurus:Platysma_Myoides
xref: SCTID:244754004
xref: VHOG:0000931
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002377 ! muscle of neck
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0010934 {source="EMAPA"} ! panniculus carnosus

[Term]
id: UBERON:0005473
name: sacral region
namespace: uberon
comment: TODO - split sacral from sacrococcygeal
synonym: "back of pelvis" EXACT [FMA:24228]
synonym: "pelvic back" EXACT [FMA:24228]
synonym: "posterior part of pelvis" EXACT [FMA:24228]
synonym: "regio sacralis" EXACT [FMA:24228, FMA:TA]
synonym: "sacral part of pelvis" EXACT [FMA:24228]
xref: FMA:24228
xref: SCTID:182344001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002355 ! pelvis

[Term]
id: UBERON:0005478
name: sulcus limitans of neural tube
namespace: uberon
def: "A longitudinal groove in the neural tube wall of the embryo; stretches from the mesencephalon caudad[TMD]." [http://medical-dictionary.thefreedictionary.com/Sulcus+limitans]
synonym: "neural tube lateral wall sulcus limitans" EXACT [EHDAA2:0001265]
synonym: "sulcus limitans" BROAD []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006846 ! groove
relationship: part_of UBERON:0005496 {source="EHDAA2"} ! neural tube lateral wall

[Term]
id: UBERON:0005480
name: superior orbital fissure
namespace: uberon
def: "The superior orbital fissure is a foramen in the skull, although strictly it is more of a cleft, lying between the lesser and greater wings of the sphenoid bone." [Wikipedia:Superior_orbital_fissure]
comment: TODO add generic foramen class
synonym: "fissura orbitalis superior" RELATED [Wikipedia:Superior_orbital_fissure]
synonym: "sphenoidal fissure" RELATED [Wikipedia:Superior_orbital_fissure]
xref: EHDAA2:0001952
xref: EHDAA:10650
xref: EMAPA:18718
xref: FMA:54799
xref: SCTID:280559002
xref: VHOG:0000553
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0003129 ! skull

[Term]
id: UBERON:0005482
name: thoracic region
namespace: uberon
comment: in FMA, this has subtypes anterior chest, chest wall, ... - but not thorax itself.
synonym: "subdivision of thorax" EXACT [FMA:20358]
synonym: "thoracic region" EXACT [FMA:20358]
synonym: "thoracic subdivision" EXACT [FMA:20358]
xref: FMA:20358
xref: SCTID:425803006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000915 ! thoracic segment of trunk

[Term]
id: UBERON:0005493
name: hyoid muscle
namespace: uberon
def: "A group of muscles used in mastication and swallowing. These muscles are attached to the hyoid bone, which is suspended in the neck and forms the base of the tongue and larynx. The muscles are divided into suprahyoid (superior) or infrahyoid (inferior) groups relative to the bone[unvetted]." [http://www.answers.com/topic/hyoid-muscles]
comment: Editor notes - grouping for all vertebrates dubious
subset: grouping_class
subset: vertebrate_core
synonym: "hyoid muscles" EXACT [ZFA:0000521]
xref: EFO:0003536
xref: EHDAA2:0000794
xref: ncithesaurus:Hyoid_Muscle
xref: SCTID:244823009
xref: TAO:0000521
xref: ZFA:0000521
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000933 ! pharyngeal muscle
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
is_a: UBERON:0002377 {source="ncit"} ! muscle of neck
relationship: develops_from UBERON:0010348 {source="EHDAA2"} ! hyoid pre-muscle mass
relationship: part_of UBERON:0004467 {source="ZFA"} ! musculature of pharynx

[Term]
id: UBERON:0005496
name: neural tube lateral wall
namespace: uberon
def: "Portion of tissue on the side of the lumen of the neural tube." [ZFA:0001435]
subset: vertebrate_core
synonym: "lateral wall neural tube" EXACT [ZFA:0001435]
xref: EHDAA2:0001257
xref: EHDAA:2873
xref: EHDAA:912
xref: TAO:0001435
xref: VHOG:0000513
xref: ZFA:0001435
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001049 ! neural tube

[Term]
id: UBERON:0005498
name: primitive heart tube
namespace: uberon
def: "Multi-tissue structure that arises from the heart rudiment and will become the heart tube." [ZFA:0000149]
subset: vertebrate_core
xref: EHDAA2:0001512
xref: EHDAA:436
xref: EMAPA:16215
xref: SCTID:361522004
xref: TAO:0000149
xref: ZFA:0000149
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0004291 {source="ZFA"} ! heart rudiment

[Term]
id: UBERON:0005564
name: gonad primordium
namespace: uberon
def: "Portion of tissue that gives rise to the immature gonad." [ZFA:0001262]
comment: Taxon notes: this is a very broad grouping class
subset: grouping_class
subset: vertebrate_core
synonym: "gonadal primordium" EXACT [ZFA:0001262]
synonym: "undifferentiated gonad" EXACT [ZFA:0001262]
xref: EFO:0003651
xref: EHDAA:5927
xref: EMAPA:17204
xref: RETIRED_EHDAA2:0002148
xref: TAO:0001262
xref: WBbt:0008366
xref: ZFA:0001262
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 {source="ZFA"} ! tissue
is_a: UBERON:0001048 {source="Obol"} ! primordium
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_into UBERON:0000991 ! gonad
relationship: part_of UBERON:0000990 {source="ZFA"} ! reproductive system

[Term]
id: UBERON:0005594
name: head somite
namespace: uberon
def: "Somite located in the head region, caudal to the otic vesicle" [PMID:11830559]
comment: Development notes: They provide the epaxial and hypaxial muscles of the neck, the pharyngeal and laryngeal muscles that develop in the caudal branchial arches and the musculature of the tongue. Despite their localisation in the head, myogenic precursors from occipital somites essentially follow the trunk programmes (E. H. Walters and S. D., unpublished).  during evolution, have been secondarily incorporated into the head (Gans and Northcutt, 1983)[PMID:11830559]
synonym: "cranial somite" RELATED [XAO:0000313]
synonym: "occipital somite" EXACT [PMID:11830559, XAO:0000313]
xref: EHDAA2:0003437
xref: EMAPA:16172
xref: XAO:0000313
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002329 ! somite
intersection_of: UBERON:0002329 ! somite
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0005597
name: lung primordium
namespace: uberon
def: "A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum." [XAO:0001002]
comment: todo - check AAO diverticulum
synonym: "lateral diverticula" RELATED [XAO:0001002]
xref: AAO:0011059
xref: XAO:0001002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 {source="XAO"} ! primordium
relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut
relationship: part_of UBERON:0008947 ! respiratory primordium

[Term]
id: UBERON:0005602
name: dorsal mesogastrium
namespace: uberon
def: "The portion of mesentery attached to the greater curvature of the stomach is named the dorsal mesentery (or dorsal mesogastrium, when referring to the portion at the stomach), and the part which suspends the colon is termed the mesocolon. The dorsal mesogastrium develops into the greater omentum." [Wikipedia:Dorsal_mesentery]
synonym: "dorsal mesentery" RELATED [Wikipedia:Dorsal_mesentery]
xref: EHDAA2:0000416
xref: EHDAA:3001
xref: EMAPA:17025
xref: EMAPA:18903
xref: MA:0001618
xref: ncithesaurus:Dorsal_Mesogastrium
xref: VHOG:0000352
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003281 {source="MA"} ! mesentery of stomach
relationship: part_of UBERON:0002296 {source="EHDAA2"} ! dorsal mesentery
relationship: part_of UBERON:0003281 {source="EHDAA2"} ! mesentery of stomach

[Term]
id: UBERON:0005604
name: hepatic duct extrahepatic part
namespace: uberon
xref: EHDAA2:0000742
xref: EHDAA:3051
xref: EMAPA:16844
xref: MA:0001636
xref: VHOG:0000215
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003703 ! extrahepatic bile duct
relationship: part_of UBERON:0005171 ! hepatic duct

[Term]
id: UBERON:0005619
name: secondary palatal shelf
namespace: uberon
def: "the outgrowths of the embryonic maxillae that come together during prenatal development to form the secondary palate" [http://medical-dictionary.thefreedictionary.com/palatal+shelves]
comment: todo - check EMAPA
synonym: "lateral palatine process" EXACT [http://medical-dictionary.thefreedictionary.com/palatal+shelf]
synonym: "palatal shelf" EXACT [MA:0001581]
synonym: "palatal shelves" RELATED PLURAL []
synonym: "secondary palatal shelf" EXACT []
xref: EHDAA2:0001364
xref: EHDAA:9283
xref: EMAPA:17362
xref: EMAPA:17930
xref: MA:0001581
xref: VHOG:0000378
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
relationship: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0005620
name: primary palate
namespace: uberon
def: "Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid." [ISBN10:0073040584, Wikipedia:Primitive_palate]
subset: vertebrate_core
synonym: "primary palate" RELATED [Wikipedia:Primitive_palate]
synonym: "primary palate process" EXACT [EHDAA2:0001499]
xref: EHDAA2:0001499
xref: EMAPA:17642
xref: EMAPA:17934
xref: MA:0001583
xref: ncithesaurus:Primary_Palate
xref: SCTID:359541001
xref: TAO:0002093
xref: VHOG:0000362
xref: ZFA:0005509
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007375 ! primary or secondary palate
relationship: part_of UBERON:0002244 ! premaxilla

[Term]
id: UBERON:0005621
name: rhomboid
namespace: uberon
def: "A rhombus-shaped muscle associated with the scapula and chiefly responsible for its retraction. There are two rhomboid muscles." [Wikipedia:Rhomboid_muscles]
comment: TODO - add child terms
synonym: "rhomboid muscle" EXACT []
xref: EHDAA2:0001635
xref: EHDAA:8315
xref: MA:0002367
xref: SCTID:277441005
xref: VHOG:0001391
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010985 {source="EHDAA2"} ! rhomboid pre-muscle mass
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0005623
name: semi-lunar valve
namespace: uberon
synonym: "semilunar valve" EXACT [MA:0002790]
synonym: "semilunar valves" EXACT PLURAL [MA:0002790]
xref: EHDAA2:0001823
xref: EHDAA:4408
xref: MA:0002790
xref: VHOG:0001393
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000946 ! cardial valve

[Term]
id: UBERON:0005625
name: tubotympanic recess
namespace: uberon
def: "The cavity formed by the tubotympanic recess epithelium." [UBERON:cjm]
comment: Editor note: we follow EHDAA2 in distinguishing between the cavity and the material entity - the former develops into the middle ear cavity
synonym: "tubotympanic recess cavity" EXACT []
synonym: "tubotympanic recess lumen" EXACT [EHDAA2:0002095]
xref: EHDAA2:0002095
xref: EHDAA:6772
xref: EMAPA:17002
xref: MA:0001218
xref: ncithesaurus:Tubotympanic_Recess
xref: SCTID:361516008
xref: VHOG:0001297
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0005082 ! tube lumen
relationship: develops_from UBERON:0007122 {source="ISBN10:0073040584"} ! pharyngeal pouch 1
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
relationship: surrounded_by UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium

[Term]
id: UBERON:0005641
name: otocyst epithelium
namespace: uberon
xref: EHDAA2:0001344
xref: EMAPA:16671
xref: EMAPA:16996
xref: EMAPA:16999
xref: VHOG:0000986
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003051 ! ear vesicle
relationship: part_of UBERON:0003051 ! ear vesicle

[Term]
id: UBERON:0005653
name: upper jaw molar epithelium
namespace: uberon
xref: EHDAA2:0002126
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003235 ! epithelium of upper jaw
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003666 ! upper jaw molar
relationship: part_of UBERON:0003666 ! upper jaw molar

[Term]
id: UBERON:0005654
name: lower jaw molar epithelium
namespace: uberon
xref: EHDAA2:0001026
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003236 ! epithelium of lower jaw
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003667 ! lower jaw molar
relationship: part_of UBERON:0003667 ! lower jaw molar

[Term]
id: UBERON:0005658
name: secondary palatal shelf epithelium
namespace: uberon
synonym: "palatal shelf epithelium" RELATED [VHOG:0001040]
xref: EHDAA2:0001365
xref: EMAPA:17363
xref: EMAPA:17931
xref: VHOG:0001040
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003235 ! epithelium of upper jaw
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005619 ! secondary palatal shelf
relationship: part_of UBERON:0005619 ! secondary palatal shelf

[Term]
id: UBERON:0005659
name: primary palate epithelium
namespace: uberon
xref: EHDAA2:0001500
xref: EMAPA:17643
xref: EMAPA:17935
xref: VHOG:0001025
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003235 ! epithelium of upper jaw
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005620 ! primary palate
relationship: part_of UBERON:0005620 ! primary palate

[Term]
id: UBERON:0005687
name: orbitosphenoid cartilage condensation
namespace: uberon
synonym: "sphenoid lesser wing cartilage condensation" RELATED [EHDAA2:0001329]
xref: EHDAA2:0001329
xref: EHDAA:9554
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0010728 {source="EHDAA2"} ! sphenoid lesser wing pre-cartilage condensation
relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid bone cartilage condensation

[Term]
id: UBERON:0005689
name: 2nd arch mesenchyme
namespace: uberon
synonym: "2nd pharyngeal arch mesenchyme" EXACT [VHOG:0001102]
xref: EHDAA2:0000066
xref: EHDAA:625
xref: EMAPA:16279
xref: VHOG:0001102
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003066 ! hyoid arch
relationship: part_of UBERON:0003066 ! hyoid arch

[Term]
id: UBERON:0005692
name: finger 2 mesenchyme
namespace: uberon
xref: EHDAA2:0000519
xref: EMAPA:17434
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005257 ! hand digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2

[Term]
id: UBERON:0005693
name: finger 3 mesenchyme
namespace: uberon
xref: EHDAA2:0000525
xref: EMAPA:17437
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005257 ! hand digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3

[Term]
id: UBERON:0005694
name: finger 4 mesenchyme
namespace: uberon
xref: EHDAA2:0000531
xref: EMAPA:17440
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005257 ! hand digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4

[Term]
id: UBERON:0005695
name: finger 5 mesenchyme
namespace: uberon
xref: EHDAA2:0000537
xref: EMAPA:17443
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005257 ! hand digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5

[Term]
id: UBERON:0005696
name: toe 2 mesenchyme
namespace: uberon
xref: EHDAA2:0002044
xref: EMAPA:17465
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005255 ! foot digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2

[Term]
id: UBERON:0005697
name: toe 3 mesenchyme
namespace: uberon
xref: EHDAA2:0002049
xref: EMAPA:17468
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005255 ! foot digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3

[Term]
id: UBERON:0005698
name: toe 4 mesenchyme
namespace: uberon
xref: EHDAA2:0002054
xref: EMAPA:17471
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005255 ! foot digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4

[Term]
id: UBERON:0005699
name: toe 5 mesenchyme
namespace: uberon
xref: EHDAA2:0002059
xref: EMAPA:17474
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005255 ! foot digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5

[Term]
id: UBERON:0005700
name: upper jaw molar mesenchyme
namespace: uberon
xref: EHDAA2:0002127
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003323 ! mesenchyme of upper jaw
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003666 ! upper jaw molar
relationship: part_of UBERON:0003666 ! upper jaw molar

[Term]
id: UBERON:0005701
name: lower jaw molar mesenchyme
namespace: uberon
xref: EHDAA2:0001027
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003324 ! mesenchyme of lower jaw
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003667 ! lower jaw molar
relationship: part_of UBERON:0003667 ! lower jaw molar

[Term]
id: UBERON:0005704
name: secondary palatal shelf mesenchyme
namespace: uberon
synonym: "palatal shelf mesenchyme" RELATED [VHOG:0001063]
xref: EHDAA2:0001366
xref: EHDAA:9287
xref: EMAPA:17364
xref: EMAPA:17932
xref: VHOG:0001063
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003323 ! mesenchyme of upper jaw
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005619 ! secondary palatal shelf
relationship: part_of UBERON:0005619 ! secondary palatal shelf

[Term]
id: UBERON:0005705
name: primary palate mesenchyme
namespace: uberon
xref: EHDAA2:0001501
xref: EHDAA:6968
xref: EMAPA:17644
xref: EMAPA:17936
xref: VHOG:0001024
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003323 ! mesenchyme of upper jaw
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005620 ! primary palate
relationship: part_of UBERON:0005620 ! primary palate

[Term]
id: UBERON:0005707
name: upper jaw incisor mesenchyme
namespace: uberon
xref: EHDAA2:0002123
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003317 ! mesenchyme of incisor
is_a: UBERON:0003323 ! mesenchyme of upper jaw
intersection_of: UBERON:0003317 ! mesenchyme of incisor
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0005708
name: lower jaw incisor mesenchyme
namespace: uberon
xref: EHDAA2:0001023
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003317 ! mesenchyme of incisor
is_a: UBERON:0003324 ! mesenchyme of lower jaw
intersection_of: UBERON:0003317 ! mesenchyme of incisor
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0005709
name: upper jaw incisor epithelium
namespace: uberon
xref: EHDAA2:0002122
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003235 ! epithelium of upper jaw
is_a: UBERON:0003355 ! epithelium of incisor
intersection_of: UBERON:0003355 ! epithelium of incisor
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw

[Term]
id: UBERON:0005710
name: lower jaw incisor epithelium
namespace: uberon
xref: EHDAA2:0001022
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003236 ! epithelium of lower jaw
is_a: UBERON:0003355 ! epithelium of incisor
intersection_of: UBERON:0003355 ! epithelium of incisor
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0005721
name: pronephric mesoderm
namespace: uberon
comment: the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney
synonym: "pronephric anlage" RELATED [XAO:0000264]
synonym: "pronephric bulge" RELATED [XAO:0000264]
synonym: "pronephric mesenchyme" RELATED [XAO:0000264]
synonym: "pronephric primordium" RELATED [XAO:0000264]
xref: AAO:0011090
xref: EFO:0003479
xref: TAO:0000067
xref: VHOG:0001239
xref: XAO:0000264
xref: ZFA:0000067
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000926 ! mesoderm
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: develops_into UBERON:0002120 ! pronephros
relationship: develops_from UBERON:0007297 {evidence="definitional"} ! presumptive pronephric mesoderm
relationship: develops_into UBERON:0002120 ! pronephros
relationship: part_of UBERON:0003064 {source="ZFA"} ! intermediate mesoderm

[Term]
id: UBERON:0005725
name: olfactory system
namespace: uberon
def: "The olfactory system is the sensory system used for olfaction, or the sense of smell. Most mammals and reptiles have two distinct parts to their olfactory system: a main olfactory system and an accessory olfactory system. The main olfactory system detects volatile, airborne substances, while the accessory olfactory system senses fluid-phase stimuli. Behavioral evidence indicates that most often, the stimuli detected by the accessory olfactory system are pheromones. The olfactory system is often spoken of along with the gustatory system as the chemosensory senses because both transduce chemical signals into perception[WP]." [Wikipedia:Olfactory_system]
comment: In mammals, the main olfactory system detects odorants that are inhaled through the nose, where they contact the main olfactory epithelium, which contains various olfactory receptors. These olfactory receptors are membrane proteins of bipolar olfactory receptor neurons in the olfactory epithelium. Rather than binding specific ligands like most receptors, olfactory receptors display affinity for a range of odor molecules. Olfactory neurons transduce receptor activation into electrical signals in neurons. The signals travel along the olfactory nerve, which belongs to the peripheral nervous system. This nerve terminates in the olfactory bulb, which belongs to the central nervous system. The complex set of olfactory receptors on different olfactory neurons can distinguish a new odor from the background environmental odors and determine the concentration of the odor // Editor note: consider splitting into main and accessory. See also: vomeronasal organ // note we make the relationship to nervous system 'overlaps', as the olfactory system includes e.g. apertures in the cranium that are not part of the nervous system
subset: vertebrate_core
xref: AAO:0000334
xref: AAO:0000978
xref: BILA:0000144
xref: EFO:0001973
xref: FMA:7190
xref: MA:0002445
xref: ncithesaurus:Olfactory_System
xref: NIF_GrossAnatomy:nlx_anat_090806
xref: OpenCyc:Mx4rvViw75wpEbGdrcN5Y29ycA
xref: SCTID:362290002
xref: TAO:0001149
xref: XAO:0003196
xref: ZFA:0001149
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001032 ! sensory system
relationship: overlaps UBERON:0001016 ! nervous system

[Term]
id: UBERON:0005729
name: forelimb/pectoral fin field
namespace: uberon
synonym: "pectoral fin field" NARROW SENSU [ZFA:0001453]
xref: TAO:0001453
xref: ZFA:0001453
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005732 ! limb/fin field
intersection_of: UBERON:0005732 ! limb/fin field
intersection_of: develops_into UBERON:0005419 ! forelimb/pectoral fin bud
relationship: develops_into UBERON:0005419 ! forelimb/pectoral fin bud

[Term]
id: UBERON:0005730
name: hindlimb/pelvic fin field
namespace: uberon
synonym: "pelvic fin field" NARROW SENSU [ZFA:0001454]
xref: TAO:0001454
xref: ZFA:0001454
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005732 ! limb/fin field
intersection_of: UBERON:0005732 ! limb/fin field
intersection_of: develops_into UBERON:0005420 ! hindlimb/pelvic fin bud
relationship: develops_into UBERON:0005420 ! hindlimb/pelvic fin bud

[Term]
id: UBERON:0005731
name: fin field
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005732 ! limb/fin field
intersection_of: UBERON:0005732 ! limb/fin field
intersection_of: develops_into UBERON:0002531 ! fin bud
relationship: develops_into UBERON:0002531 ! fin bud

[Term]
id: UBERON:0005732
name: limb/fin field
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0004357 ! limb/fin bud
relationship: develops_into UBERON:0004357 ! limb/fin bud
relationship: part_of UBERON:0003081 {source="ZFA-inferred", source="ISBN:9780878932504"} ! lateral plate mesoderm

[Term]
id: UBERON:0005733
name: limb field
namespace: uberon
def: "A ring of cells capable of forming a limb." [ISBN:9780878932504]
comment: the central portion of the limb field gives rise to the limb proper. mesenchyme cells proliferate from from the somatic layer of limb field lateral plate mesoderm (limb skeletal precursors) and from the somites (limb muscle precursors) . these mesenchymal cells accumulate under the ectedermal tissue to make a limb bud.
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005732 ! limb/fin field
intersection_of: UBERON:0005732 ! limb/fin field
intersection_of: develops_into UBERON:0004347 ! limb bud
relationship: develops_into UBERON:0004347 ! limb bud

[Term]
id: UBERON:0005734
name: tunica adventitia
namespace: uberon
def: "The outermost layer of a blood vessel, surrounding the tunica media. It is mainly composed of collagen. The collagen serves to anchor the blood vessel to nearby organs, giving it stability." [Wikipedia:Tunica_externa_%28vessels%29]
comment: TODO - note terminological problems. WP says tunica external layer of blood vessel. FMA says tunica externa = adventitia, and is FMA adventitia covers other kinds of vessels. Here we opt for a lengthier name that attempts to disambiguate. There is no precise FMA equivalent, as FMA has tunica externa of arteries, veins, genital ducts etc as siblings
synonym: "adventitia externa" EXACT [Wikipedia:Tunica_externa_%28vessels%29]
synonym: "external coat" RELATED [Wikipedia:Tunica_externa_%28vessels%29]
synonym: "tunica adventitia of vessel" EXACT [Wikipedia:Tunica_externa_%28vessels%29]
xref: ncithesaurus:Tunica_Adventitia
xref: SCTID:30180000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004797 {source="cjm"} ! blood vessel layer
is_a: UBERON:0005742 ! adventitia

[Term]
id: UBERON:0005742
name: adventitia
namespace: uberon
def: "An outermost connective tissue covering of an organ, vessel, or other structure[WP]." [Wikipedia:Adventitia]
synonym: "tunica advetitia" NARROW [Wikipedia:Adventitia]
synonym: "tunica externa" NARROW [FMA:45635]
xref: BTO:0004838
xref: FMA:45635
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004923 ! organ component layer

[Term]
id: UBERON:0005743
name: central nervous system plus retina
namespace: uberon
def: "Neuraxis plus retina[INCF]." [UBERON:cjm]
comment: this class was added to account for some definitions of the CNS that includes retina. Most existing AOs use CNS to exclude the retina. See comments for CNS.
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000073 ! regional part of nervous system
relationship: has_part UBERON:0000966 ! retina
relationship: has_part UBERON:0001017 ! central nervous system

[Term]
id: UBERON:0005744
name: cranial conduit
namespace: uberon
def: "Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." [TAO:curator, Wikipedia:Foramina_of_the_skull]
comment: AO notes: in FMA and ZFA this is a conduit space, not a conduit. Note there may be some additional disambiguation required: foramen is used loosely in the sense of any opening (e.g. foramen primum). FMA appears to use cranial conduit (undefined) in the sense of any foramen of the skull (includes mental foramen, which is not in the cranium proper).
subset: vertebrate_core
synonym: "foramen" BROAD [ZFA:0005386]
synonym: "foramen of skull" RELATED [Wikipedia:Foramina_of_the_skull]
xref: AAO:0010438
xref: FMA:53165
xref: SCTID:276742007
xref: TAO:0001736
xref: ZFA:0005386
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0004111 ! anatomical conduit
intersection_of: part_of UBERON:0003129 ! skull
relationship: part_of UBERON:0003129 ! skull

[Term]
id: UBERON:0005745
name: optic canal
namespace: uberon
def: "The short canal through the orbitosphenoid bone at the apex of the orbit that gives passage to the optic nerve and the opthalmic artery[MP]. The optic foramen is the opening to the optic canal. The superior surface of the sphenoid bone is bounded behind by a ridge, which forms the anterior border of a narrow, transverse groove, the chiasmatic groove (optic groove), above and behind which lies the optic chiasma; the groove ends on either side in the optic foramen, which transmits the optic nerve and ophthalmic artery (with accompanying sympathetic nerve fibres) into the orbital cavity. The left and right optic canals are 25mm apart posteriorly and 30mm apart anteriorly. They are funnel-shaped (narrowest anteriorly)." [ISBN:0-683-40008-8, MP:0010704, Wikipedia:Optic_canal]
subset: vertebrate_core
synonym: "canalis opticus" RELATED [Wikipedia:Optic_canal]
synonym: "optic foramen" RELATED [Wikipedia:Optic_canal]
xref: AAO:0000342
xref: EHDAA:10646
xref: FMA:54774
xref: SCTID:361732009
xref: TAO:0002025
xref: VHOG:0001408
xref: ZFA:0005428
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit

[Term]
id: UBERON:0005753
name: caudal part of nephrogenic cord
namespace: uberon
def: "the metanephros develops from the most caudal part of the nephrogenic cord that is itself derived from the intermediate plate mesoderm." [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
synonym: "caudal portion of nephrogenic cord" EXACT [OBOL:automatic]
synonym: "caudal region of nephrogenic cord" EXACT [OBOL:automatic]
synonym: "rear part of nephrogenic cord" EXACT [OBOL:automatic]
synonym: "rear portion of nephrogenic cord" EXACT [Wikipedia:Metanephros#Metanephros]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004875 ! nephrogenic cord

[Term]
id: UBERON:0005754
name: rostral part of nephrogenic cord
namespace: uberon
def: "The initial renal anlage that develops from the most rostral part of the nephrogenic cord is termed the pronephros." [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004875 ! nephrogenic cord

[Term]
id: UBERON:0005764
name: acellular membrane
namespace: uberon
xref: FMA:63871
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000476 ! acellular anatomical structure

[Term]
id: UBERON:0005769
name: basement membrane
namespace: uberon
comment: we include this even though it is redundant with GO because we have subclasses that are appropriate for an ontology of gross anatomy
synonym: "basal lamina" RELATED [GAID:915]
synonym: "basement lamina" RELATED [GAID:915]
synonym: "Basement membrane of connective tissue" EXACT [FMA:63872]
xref: AAO:0010596
xref: FMA:63872
xref: GAID:915
xref: GO:0005604
xref: ncithesaurus:Basement_Membrane
xref: SCTID:68989006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005764 ! acellular membrane
relationship: part_of UBERON:0000483 ! epithelium

[Term]
id: UBERON:0005795
name: embryonic uterus
namespace: uberon
synonym: "fetal uterus" EXACT [FMA:72173]
xref: FMA:72173
xref: SCTID:255782009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure

[Term]
id: UBERON:0005808
name: bone tissue of long bone
namespace: uberon
xref: FMA:83117
xref: SCTID:425475006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0002495 ! long bone
relationship: part_of UBERON:0002495 ! long bone

[Term]
id: UBERON:0005809
name: cortex of hand bone
namespace: uberon
def: "." [HP:0005926]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001439 ! compact bone
is_a: UBERON:0003598 ! hand connective tissue
intersection_of: UBERON:0001439 ! compact bone
intersection_of: part_of UBERON:0005897 ! hand bone
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0005897 ! hand bone

[Term]
id: UBERON:0005810
name: cervical vertebra 1 anterior tubercle
namespace: uberon
comment: TODO - check: anterior vs ventral; arch vs transverse process
synonym: "anterior tubercle of atlas" EXACT [FMA:23991]
synonym: "atlas ventral tubercle" EXACT [MA:0002871]
synonym: "cervical vertebra 1 ventral tubercle" EXACT [MA:0002871]
synonym: "tubercle of anterior arch of atlas" EXACT [FMA:23991]
synonym: "tuberculum anterius (atlas)" EXACT [FMA:23991]
synonym: "ventral tubercle of atlas" EXACT [MP:0010731]
xref: FMA:23991
xref: MA:0002871
xref: SCTID:281224005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0005813 ! tubercle
relationship: part_of UBERON:0005814 ! arch of atlas

[Term]
id: UBERON:0005813
name: tubercle
namespace: uberon
def: "a round nodule, small eminence, or warty outgrowth found on bones, skin, or within the lungs in tuberculosis. They are also found on the leading edge of Humpback Whale's flippers, improving fluid flow over the flipper's surface[WP]." [Wikipedia:Tubercle_(anatomy)]
subset: grouping_class
xref: AAO:0010605
xref: BTO:0002173
xref: FMA:75429
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004529 ! anatomical projection

[Term]
id: UBERON:0005814
name: arch of atlas
namespace: uberon
def: "." [Wikipedia:Arch_of_the_atlas]
synonym: "atlas arch" EXACT [FMA:23975]
xref: FMA:23975
xref: SCTID:272708001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003861 ! neural arch

[Term]
id: UBERON:0005815
name: anterior tubercle of transverse process of cervical vertebra
namespace: uberon
synonym: "anterior costal tubercle of transverse process of cervical vertebra" EXACT [FMA:24126]
synonym: "anterior tubercle of cervical vertebra" EXACT [FMA:24126]
synonym: "tuberculum cervicales anterius vertebrae" EXACT [FMA:24126, FMA:TA]
xref: FMA:24126
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0005813 ! tubercle
relationship: part_of UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0005816
name: posterior tubercle of transverse process of cervical vertebra
namespace: uberon
synonym: "posterior costal tubercle of transverse process of cervical vertebra" EXACT [FMA:24128]
synonym: "posterior tubercle of cervical vertebra" EXACT [FMA:24128]
synonym: "tuberculum cervicales posterius vertebrae" EXACT [FMA:24128, FMA:TA]
xref: FMA:24128
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0005813 ! tubercle
relationship: part_of UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0005856
name: mesenchymal condensation
namespace: uberon
synonym: "mesenchyme condensation" EXACT [EMAPA:25351]
xref: EHDAA2:0003148
xref: EHDAA:8979
xref: EMAPA:25351
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme

[Term]
id: UBERON:0005863
name: cartilaginous condensation
namespace: uberon
def: "Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes." [GO:curator]
comment: AO notes: isa cell condensation in VAO
synonym: "cartilage condensation" EXACT [EMAPA:25353]
synonym: "cartilagenous condensation" EXACT [EHDAA2:0003147]
synonym: "chondrogenic condensation" EXACT [VAO:0000092]
xref: AEO:0000147
xref: EHDAA2:0003147
xref: EMAPA:25353
xref: VAO:0000092
xref: XAO:0004022
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005856 ! mesenchymal condensation
relationship: develops_from UBERON:0005866 ! pre-cartilage condensation

[Term]
id: UBERON:0005865
name: pre-muscle condensation
namespace: uberon
alt_id: UBERON:0008714
synonym: "pre muscle mass" EXACT []
synonym: "premuscle mass" EXACT []
xref: AEO:0000149
xref: EHDAA2:0003149
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005856 ! mesenchymal condensation

[Term]
id: UBERON:0005866
name: pre-cartilage condensation
namespace: uberon
def: "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage]
xref: AEO:0000150
xref: EHDAA2:0003150
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005856 {source="EHDAA2"} ! mesenchymal condensation

[Term]
id: UBERON:0005867
name: mandibular prominence
namespace: uberon
def: "The mandibular prominence is an embryological structure which gives rise to the lower portion of the face. The mandible and lower lip derive from it. It is innervated by the mandibular nerve." [Wikipedia:Mandibular_prominence]
comment: Editor note: check develops_from
synonym: "mandibular process" RELATED [Wikipedia:Mandibular_prominence]
synonym: "mandibular swelling" RELATED [UBERON:cjm]
xref: EHDAA2:0001061
xref: EHDAA:5871
xref: EMAPA:17355
xref: ncithesaurus:Mandibular_Prominence
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0007237 ! 1st arch mandibular component
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005868
name: maxillary prominence
namespace: uberon
def: "Continuous with the dorsal end of the mandibular arch, and growing forward from its cephalic border, is a triangular process, the maxillary process (or maxillary prominence), the ventral extremity of which is separated from the mandibular arch by a '>' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve." [Wikipedia:Maxillary_prominence]
synonym: "maxillary process" EXACT [EHDAA2:0001070]
synonym: "maxillary process of embryo" EXACT [SCTID:346355001]
xref: EHDAA2:0001070
xref: EHDAA:5877
xref: EMAPA:17359
xref: ncithesaurus:Maxillary_Prominence
xref: SCTID:346355001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
disjoint_from: UBERON:0005869 ! maxillary process of inferior nasal concha
relationship: develops_from UBERON:0007238 ! 1st arch maxillary component
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005869
name: maxillary process of inferior nasal concha
namespace: uberon
def: "From the lower border of the inferior nasal concha, a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Maxillary_process_of_inferior_nasal_concha]
synonym: "maxillary process of inferior concha" EXACT [FMA:54741]
synonym: "maxillary process of inferior nasal turbinate" EXACT [FMA:54741]
synonym: "maxillary process of inferior turbinate" EXACT [FMA:54741]
synonym: "processus maxillaris (concha nasalis inferior)" EXACT [FMA:54741]
synonym: "processus maxillaris conchae nasalis inferioris" EXACT [FMA:54741, FMA:TA]
xref: FMA:54741
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0005922 ! inferior nasal concha

[Term]
id: UBERON:0005870
name: olfactory pit
namespace: uberon
def: "By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[WP]. an indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, Wikipedia:Olfactory_pit]
comment: we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode
synonym: "nasal pit" EXACT [XAO:0000275]
xref: AAO:0011068
xref: EFO:0003496
xref: EHDAA2:0001295
xref: EHDAA:4772
xref: EMAPA:16800
xref: SCTID:361485001
xref: XAO:0000275
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005871
name: palatine process of maxilla
namespace: uberon
def: "The palatine process of the maxilla (palatal process), thick and strong, is horizontal and projects medialward from the nasal surface of the bone. It forms a considerable part of the floor of the nose and the roof of the mouth and is much thicker in front than behind. Its inferior surface is concave, rough and uneven, and forms, with the palatine process of the opposite bone, the anterior three-fourths of the hard palate. It is perforated by numerous foramina for the passage of the nutrient vessels; is channelled at the back part of its lateral border by a groove, sometimes a canal, for the transmission of the descending palatine vessels and the anterior palatine nerve from the spheno-palatine ganglion; and presents little depressions for the lodgement of the palatine glands. When the two maxillae are articulated, a funnel-shaped opening, the incisive foramen, is seen in the middle line, immediately behind the incisor teeth. In this opening the orifices of two lateral canals are visible; they are named the incisive canals or foramina of Stenson; through each of them passes the terminal branch of the descending palatine artery and the nasopalatine nerve. Occasionally two additional canals are present in the middle line; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. On the under surface of the palatine process, a delicate linear suture, well seen in young skulls, may sometimes be noticed extending lateralward and forward on either side from the incisive foramen to the interval between the lateral incisor and the canine tooth. The small part in front of this suture constitutes the premaxilla (os incisivum), which in most vertebrates forms an independent bone; it includes the whole thickness of the alveolus, the corresponding part of the floor of the nose and the anterior nasal spine, and contains the sockets of the incisor teeth. The upper surface of the palatine process is concave from side to side, smooth, and forms the greater part of the floor of the nasal cavity. It presents, close to its medial margin, the upper orifice of the incisive canal. The lateral border of the process is incorporated with the rest of the bone. The medial border is thicker in front than behind, and is raised above into a ridge, the nasal crest, which, with the corresponding ridge of the opposite bone, forms a groove for the reception of the vomer. The front part of this ridge rises to a considerable height, and is named the incisor crest; it is prolonged forward into a sharp process, which forms, together with a similar process of the opposite bone, the anterior nasal spine. The posterior border is serrated for articulation with the horizontal part of the palatine bone." [Wikipedia:Palatine_process_of_maxilla]
synonym: "palatal process" EXACT [Wikipedia:Palatine_process_of_maxilla]
synonym: "palatine process" EXACT [Wikipedia:Palatine_process_of_maxilla]
synonym: "processus palatinus (maxilla)" EXACT [FMA:52896]
xref: FMA:52896
xref: SCTID:368870009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0002397 ! maxilla

[Term]
id: UBERON:0005872
name: 1st arch pharyngeal cleft
namespace: uberon
def: "A groove that is situated between the 1st and 2nd pharyngeal arch." [VHOG:OG]
subset: vertebrate_core
synonym: "1st arch branchial groove" EXACT [EHDAA2:0000008]
synonym: "1st arch groove ectoderm" EXACT [EHDAA2:0000009]
synonym: "branchial groove of 1st arch" EXACT [EMAPA:16119]
xref: EHDAA2:0000009
xref: EHDAA:575
xref: EMAPA:16119
xref: VHOG:0000969
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005879 ! pharyngeal cleft
intersection_of: UBERON:0005879 ! pharyngeal cleft
intersection_of: overlaps UBERON:0003066 ! hyoid arch
intersection_of: overlaps UBERON:0004362 ! mandibular arch
relationship: overlaps UBERON:0003066 ! hyoid arch
relationship: overlaps UBERON:0004362 ! mandibular arch

[Term]
id: UBERON:0005876
name: genital tubercle
namespace: uberon
def: "A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]." [Wikipedia:Genital_tubercle]
comment: Taxon notes: todo - add taxon constraints
xref: EHDAA2:0000705
xref: EHDAA:5925
xref: EMAPA:17382
xref: SCTID:308798005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004874 ! somatopleure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000990 ! reproductive system

[Term]
id: UBERON:0005879
name: pharyngeal cleft
namespace: uberon
def: "the counterpart of a branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]." [Wikipedia:Pharyngeal_groove]
comment: Editor notes: consider adding location (precursor) - i.e. external (ectodermal). Note we use overlaps as the relationship to the arches
synonym: "branchial cleft" RELATED [Wikipedia:Pharyngeal_groove]
synonym: "branchial groove" RELATED [AAO:0010623, Wikipedia:Pharyngeal_groove]
synonym: "pharyngeal groove" EXACT [Wikipedia:Pharyngeal_groove]
xref: AAO:0010623
xref: ncithesaurus:Pharyngeal_Groove
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0006846 {source="EHDAA2"} ! groove
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: overlaps UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0005881
name: limb outgrowth
namespace: uberon
comment: encompasses digits and prepollex
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment

[Term]
id: UBERON:0005884
name: hyoid arch skeleton
namespace: uberon
synonym: "pharyngeal arch 2 skeleton" EXACT [ZFA:0001276]
xref: AAO:0010370
xref: TAO:0001276
xref: XAO:0003177
xref: ZFA:0001276
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008895 ! pharyngeal arch skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0003066 ! hyoid arch
relationship: part_of UBERON:0003066 ! hyoid arch
relationship: subdivision_of UBERON:0003066 ! hyoid arch

[Term]
id: UBERON:0005886
name: pharyngeal arch 3-7 skeleton
namespace: uberon
synonym: "branchial arch skeleton" RELATED SENSU [XAO:0003180]
xref: TAO:0000095
xref: XAO:0003180
xref: ZFA:0000095
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0008895 ! pharyngeal arch skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0008896 ! pharyngeal arch 3-7
relationship: part_of UBERON:0001704 {source="XAO"} ! viscerocranium
relationship: part_of UBERON:0008896 {source="ZFA"} ! pharyngeal arch 3-7
relationship: subdivision_of UBERON:0008896 ! pharyngeal arch 3-7

[Term]
id: UBERON:0005891
name: coelomic epithelium
namespace: uberon
def: "The epithelial lining of the surface of the body wall and abdominal organs." [Wikipedia:Coelomic_epithelium, XAO:0000329]
xref: EHDAA2:0004049
xref: XAO:0000329
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0004871 ! somatic layer of lateral plate mesoderm
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm

[Term]
id: UBERON:0005893
name: leg bone
namespace: uberon
def: "A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any foot phalanx" [UBERON:cjm]
xref: MA:0000670
xref: MESH:A.02.835.232.500
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003464 ! hindlimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg

[Term]
id: UBERON:0005897
name: hand bone
namespace: uberon
def: "A bone that is part of the hand skeleton" [UBERON:cjm]
xref: MA:0000619
xref: SCTID:265809008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008962 ! forelimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0005899
name: foot bone
namespace: uberon
def: "A bone that is part of the foot skeleton" [UBERON:cjm]
xref: GAID:192
xref: MA:0000643
xref: MESH:A.02.835.232.300
xref: ncithesaurus:Foot_Bone
xref: OpenCyc:Mx4rv5ridZwpEbGdrcN5Y29ycA
xref: SCTID:361371005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003464 ! hindlimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001445 ! skeleton of foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0005902
name: occipital region
namespace: uberon
def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyles." [TAO:0001414]
comment: TODO - check
synonym: "basicranial region" EXACT [ZFA:0001414]
synonym: "occipital part of head" EXACT [FMA:49187]
xref: AAO:0010199
xref: FMA:49187
xref: SCTID:362618001
xref: TAO:0001414
xref: XAO:0003173
xref: ZFA:0001414
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0005904
name: duct of male reproductive system
namespace: uberon
comment: groups the individual ducts in a variety of species
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system

[Term]
id: UBERON:0005906
name: serous sac
namespace: uberon
def: "Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA]" [FMA:9689]
xref: FMA:9689
xref: SCTID:362890006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ

[Term]
id: UBERON:0005908
name: conjunctival sac
namespace: uberon
def: "Serous sac, which has as parts the conjunctiva and the cavity of conjunctiva. Examples: There are only two conjunctival sacs, the right and the left.[FMA]" [FMA:20291]
xref: EMAPA:18233
xref: FMA:20291
xref: SCTID:362531001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005906 {source="FMA"} ! serous sac
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
relationship: part_of UBERON:0001801 {source="MA"} ! anterior segment of eyeball

[Term]
id: UBERON:0005911
name: endo-epithelium
namespace: uberon
def: "Epithelium that derives from the endoderm. Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland.[FMA]" [FMA:69065, FMA:FMA]
xref: FMA:69065
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000925 ! endoderm

[Term]
id: UBERON:0005913
name: zone of bone organ
namespace: uberon
synonym: "bone organ zone" EXACT [FMA:10483]
xref: FMA:10483
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0001474 ! bone

[Term]
id: UBERON:0005919
name: supreme nasal concha
namespace: uberon
def: "a thin bony plate occasionally found projecting from the inner wall of the ethmoid labyrinth, above the bony superior nasal concha, and the mucous membrane covering the plate." [http://medical-dictionary.thefreedictionary.com/supreme+nasal+concha]
synonym: "concha nasi suprema" EXACT [FMA:57457, FMA:TA]
synonym: "highest nasal concha" EXACT [FMA:57457]
synonym: "supreme nasal turbinate" EXACT [FMA:57457]
synonym: "supreme turbinate" EXACT [FMA:57457]
xref: FMA:57457
xref: SCTID:361935003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003973 ! nasal concha of ethmoid bone

[Term]
id: UBERON:0005920
name: superior nasal concha
namespace: uberon
def: "The back part of the medial surface of the labyrinth of ethmoid is subdivided by a narrow oblique fissure, the superior meatus of the nose, bounded above by a thin, curved plate, the superior nasal concha. The bone found in superior nasal concha is part of the ethmoid bone." [Wikipedia:Superior_nasal_concha]
synonym: "superior concha" RELATED [Wikipedia:Superior_nasal_concha]
synonym: "superior nasal turbinate" EXACT [FMA:57458]
synonym: "superior turbinate" EXACT [FMA:57458]
xref: FMA:57458
xref: SCTID:361934004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003973 ! nasal concha of ethmoid bone

[Term]
id: UBERON:0005921
name: middle nasal concha
namespace: uberon
def: "The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha." [Wikipedia:Middle_nasal_concha]
synonym: "middle concha" RELATED [Wikipedia:Middle_nasal_concha]
synonym: "middle nasal turbinate" EXACT [FMA:57459]
synonym: "middle turbinate" EXACT [FMA:57459]
xref: FMA:57459
xref: SCTID:361933005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003973 ! nasal concha of ethmoid bone

[Term]
id: UBERON:0005922
name: inferior nasal concha
namespace: uberon
def: "The inferior nasal concha (Inferior Turbinated Bone) is one of the turbinates in the nose. It extends horizontally along the lateral wall of the nasal cavity [Fig. 1] and consists of a of spongy bone, curled upon itself like a scroll. Each inferior nasal concha is considered a facial pair of bones since they arise from the maxillae bones and projects horizontally into the nasal cavity. They are also termed 'inferior nasal turbinates' because they function similar to that of a turbine. As the air passes through the turbinates, the air is churned against these mucosa-lined bones in order to receive warmth, moisture and cleansing. Superior to inferior nasal concha are the middle nasal concha and superior nasal concha which arise from the cranial portion of the skull. Hence, these two are considered as a part of the cranial bones. It has two surfaces, two borders, and two extremities." [Wikipedia:Inferior_nasal_concha]
comment: note that in FMA this is not classified with the other turbinates. In Uberon we subdivide the turbinates into the ethmoturbinates and the inferior turbinate. TODO: check ethmoidal process of inferior nasal concha
synonym: "inferior concha" RELATED [Wikipedia:Inferior_nasal_concha]
synonym: "inferior nasal turbinate" EXACT [FMA:54736]
synonym: "inferior turbinate" EXACT [FMA:54736]
synonym: "inferior turbinated" RELATED [Wikipedia:Inferior_nasal_concha]
xref: FMA:54736
xref: ncithesaurus:Inferior_Turbinate
xref: SCTID:361932000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001762 ! nasal concha
is_a: UBERON:0003462 ! viscerocranium bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: develops_from UBERON:0006332 {source="ISBN10:1588903958"} ! nasal capsule
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0005925
name: ethmoidal process of inferior nasal concha
namespace: uberon
def: "Behind the lacrimal process of the inferior nasal conchae lies a broad, thin plate, the ethmoidal process, which ascends to join the uncinate process of the ethmoid; from its lower border a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Ethmoidal_process_of_inferior_nasal_concha]
synonym: "ethmoidal process of inferior concha" EXACT [FMA:54742]
synonym: "ethmoidal process of inferior nasal turbinate" EXACT [FMA:54742]
synonym: "ethmoidal process of inferior turbinate" EXACT [FMA:54742]
synonym: "processus ethmoidalis (concha nasalis inferior)" EXACT [FMA:54742]
synonym: "processus ethmoidalis conchae nasalis inferioris" EXACT [FMA:54742, FMA:TA]
xref: FMA:54742
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0005922 ! inferior nasal concha

[Term]
id: UBERON:0005944
name: axial skeleton
namespace: uberon
def: "Subdivision of skeleton which consists of skull, set of all vertebrae, set of all ribs and sternum[FMA]." [FMA:71221, Wikipedia:Axial_skeleton]
comment: note that in versions of FMA prior to v3, axial skeleton did _not_ include the skull
subset: uberon_slim
xref: AAO:0000963
xref: EMAPA:17214
xref: EMAPA:18043
xref: FMA:71221
xref: MA:0000308
xref: ncithesaurus:Axial_Skeleton
xref: SCTID:361725000
xref: VAO:0000056
xref: XAO:0004011
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: develops_from UBERON:0003089 ! sclerotome
relationship: part_of UBERON:0004288 ! skeleton

[Term]
id: UBERON:0005945
name: neurocranial trabecula
namespace: uberon
synonym: "neurocranial trabeculae" EXACT PLURAL [ZFA:0001321]
synonym: "trabecula" BROAD SENSU [ZFA:0001321]
synonym: "trabecular cartilage" BROAD [ZFA:0001321]
xref: EFO:0003677
xref: TAO:0001321
xref: ZFA:0001321
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0003932 ! chondrocranium cartilage
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0003112 ! olfactory region

[Term]
id: UBERON:0005946
name: outflow tract of atrium
namespace: uberon
synonym: "outflow part of atrium" EXACT [FMA:14141]
xref: FMA:14141
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004145 ! outflow tract
intersection_of: UBERON:0004145 ! outflow tract
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: continuous_with UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002081 ! cardiac atrium

[Term]
id: UBERON:0005956
name: outflow part of left ventricle
namespace: uberon
def: "Outflow part of ventricle which is continuous with the aorta[FMA]. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]." [FMA:9473]
synonym: "aortic vestibule" EXACT [FMA:9473]
synonym: "left ventricular outflow" EXACT [FMA:9473]
synonym: "LVOT" EXACT []
synonym: "outflow tract of left ventricle" EXACT [FMA:9473]
synonym: "vestibulum aortae" EXACT [FMA:9473, FMA:TA]
xref: FMA:9473
xref: SCTID:264070001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005337 ! outflow tract of ventricle
intersection_of: UBERON:0005337 ! outflow tract of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle

[Term]
id: UBERON:0005965
name: outflow part of right atrium
namespace: uberon
def: "Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve.[FMA]" [FMA:9550, FMA:FMA]
synonym: "main part of right atrium" EXACT [FMA:9550]
synonym: "outflow tract of right atrium" EXACT [FMA:9550]
xref: FMA:9550
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005946 ! outflow tract of atrium
intersection_of: UBERON:0005946 ! outflow tract of atrium
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0002078 ! right atrium

[Term]
id: UBERON:0005969
name: reticulum trabeculare
namespace: uberon
alt_id: UBERON:0004028
def: "a fenestrated endothelial-like tissue situated at the intersection of the cornea and the iris[GO]. The trabecular meshwork is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). The tissue is spongy and lined by trabeculocytes; it allows fluid to drain into a set of tubes called Schlemm's canal flowing into the blood system[WP]. A porelike structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates to the canal of Schlemm.[GAID] the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates[MP]." [GO:0002930, MP:0005203, Wikipedia:Trabecular_meshwork]
comment: TODO check syns - ligaments
synonym: "cribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "Hueck's ligament" RELATED [BTO:0001605]
synonym: "iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum peactin-tum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum anguli iridocornealis" RELATED [BTO:0001605]
synonym: "ligamentum pectinatum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "pectinate ligament" RELATED [BTO:0001605]
synonym: "pectinate ligament of iris" RELATED [BTO:0001605]
synonym: "scleral trabeculae" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecular" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecule" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular mesh" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular meshwork" RELATED [BTO:0001605, GO:0002930]
synonym: "trabecular meshwork of the eye" EXACT [Wikipedia:Trabecular_meshwork]
xref: BTO:0001605
xref: EFO:0003077
xref: EV:0100352
xref: GAID:897
xref: MESH:A.09.371.060.932
xref: ncithesaurus:Trabecular_Meshwork
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0006205 ! pectineal ligament
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0003956 ! aqueous drainage system
relationship: surrounds UBERON:0001766 ! anterior chamber of eyeball

[Term]
id: UBERON:0005972
name: tunnel of Corti
namespace: uberon
def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002227 ! spiral organ of cochlea

[Term]
id: UBERON:0005980
name: pectinate muscle
namespace: uberon
def: "the prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]." [MP:0010496, Wikipedia:Musculi_pectinati]
synonym: "musculi pectinati" EXACT PLURAL [Wikipedia:Musculi_pectinati]
synonym: "musculus pectinatus" EXACT [FMA:12226]
xref: FMA:12226
xref: SCTID:277718001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002302 ! myocardium of atrium

[Term]
id: UBERON:0005982
name: Bachmann's bundle
namespace: uberon
def: "the impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium" [MP:0010517, Wikipedia:Bachmann's_bundle]
synonym: "anterior interatrial band" EXACT [UBERON:gg]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/05/ConductionsystemoftheheartwithouttheHeart.png/350px-ConductionsystemoftheheartwithouttheHeart.png
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002350 {source="MP"} ! conducting system of heart

[Term]
id: UBERON:0005983
name: heart layer
namespace: uberon
def: "the laminar structure of the heart" [MP:0010545]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
intersection_of: UBERON:0004923 ! organ component layer
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0005985
name: coronary vessel
namespace: uberon
def: "any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation" [MP:0010551]
comment: TODO - change relation from part_of
xref: MESH:A.07.231.114.269
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000055 ! vessel
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000055 ! vessel
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0005986
name: left branch of atrioventricular bundle
namespace: uberon
def: "Subdivision of conducting system of heart which enters the septal myocardium of left ventricle and is continuous with the anterior, septal and posterior divisions of the left branch of the atrioventricular bundle[FMA]. the left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]." [FMA:9487, MP:0010566]
synonym: "crus sinistrum (fasciculi atrioventricularis)" EXACT [FMA:9487]
synonym: "left bundle branch" EXACT [MP:0010566]
synonym: "left bundle branch of bundle of His" EXACT [HP:0005172]
synonym: "left bundle of atrioventricular bundle" EXACT [MP:0010566]
synonym: "left crus of atrioventricular bundle" EXACT [MP:0010566]
synonym: "left posterior branch" EXACT [MP:0010566]
synonym: "left posterior bundle" EXACT [MP:0010566]
xref: FMA:9487
xref: SCTID:277690001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_left_side_of UBERON:0002353 ! atrioventricular bundle
relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart

[Term]
id: UBERON:0005987
name: right branch of atrioventricular bundle
namespace: uberon
def: "Subdivision of conducting system of heart which enters the septal myocardium of right ventricle  to reach the anterior papillary muscle and then subendocardially to the apex of the heart[FMA]. the right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers[MP]." [FMA:9486, MP:0010567]
synonym: "crus dextrum (fasciculi atrioventricularis)" EXACT [FMA:9486]
synonym: "right bundle" EXACT [FMA:9486, MP:0010567]
synonym: "right bundle branch" EXACT [FMA:9486]
synonym: "right bundle branch of bundle of His" EXACT []
synonym: "right right crus of atrioventricular bundle" EXACT [MP:0010567]
synonym: "right ventricular bundle" EXACT [MP:0010567]
xref: FMA:9486
xref: SCTID:277689005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_right_side_of UBERON:0002353 ! atrioventricular bundle
relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart

[Term]
id: UBERON:0005988
name: atrium myocardial trabecula
namespace: uberon
def: "the supporting bundles of muscular fibers lining the walls of the atria" [MP:0010581]
synonym: "atrial trabecula" EXACT []
synonym: "atrium myocardial trabeculae" EXACT PLURAL [MP:0010581]
synonym: "trabecula of atrium" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002302 ! myocardium of atrium

[Term]
id: UBERON:0005991
name: aortic valve anulus
namespace: uberon
def: "the fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps" [MP:0010598]
synonym: "anulus of aortic valve" EXACT [FMA:9502]
synonym: "aortic anulus" EXACT [FMA:9502]
synonym: "aortic valvar anulus" EXACT [FMA:9502]
synonym: "fibrous ring of aortic valve" EXACT [FMA:9502]
xref: FMA:9502
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002137 ! aortic valve

[Term]
id: UBERON:0005993
name: pulmonary valve anulus
namespace: uberon
def: "the fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps" [MP:0010606]
synonym: "anulus of pulmonary valve" EXACT [FMA:9503]
synonym: "fibrous ring of pulmonary valve" EXACT [FMA:9503]
synonym: "pulmonary anulus" EXACT [FMA:9503]
synonym: "pulmonary valvar anulus" EXACT [FMA:9503]
xref: FMA:9503
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002146 ! pulmonary valve

[Term]
id: UBERON:0005995
name: mitral valve anulus
namespace: uberon
def: "the fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps" [MP:0010613]
synonym: "anulus of mitral valve" EXACT [FMA:9498]
synonym: "fibrous ring of mitral valve" EXACT [FMA:9498]
synonym: "mitral anulus" EXACT [FMA:9498]
synonym: "mitral valvar anulus" EXACT [FMA:9498]
xref: FMA:9498
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002135 ! mitral valve

[Term]
id: UBERON:0005997
name: tricuspid valve anulus
namespace: uberon
def: "the fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp)" [MP:0010621]
synonym: "anulus of tricuspid valve" EXACT [FMA:9500]
synonym: "fibrous ring of tricuspid valve" EXACT [FMA:9500]
synonym: "tricuspid anulus" EXACT [FMA:9500]
synonym: "tricuspid valvar anulus" EXACT [FMA:9500]
xref: FMA:9500
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002134 ! tricuspid valve

[Term]
id: UBERON:0006006
name: metoptic pilar
namespace: uberon
def: "posterior border of the optic nerve foramen." [MP:0010705]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0005745 ! optic canal

[Term]
id: UBERON:0006008
name: fibrous ring of heart
namespace: uberon
def: "The right and left fibrous rings of heart (anulus fibrosus cordis) surround the atrioventricular and arterial orifices, and are stronger upon the left than on the right side of the heart. The right fibrous ring is known as the anulus fibrosus dexter cordis, and the left is known as the anulus fibrosus sinister cordis. The atrioventricular rings serve for the attachment of the muscular fibers of the atria and ventricles, and for the attachment of the bicuspid and tricuspid valves. The left atrioventricular ring is closely connected, by its right margin, with the aortic arterial ring; between these and the right atrioventricular ring is a triangular mass of fibrous tissue, the trigonum fibrosum, which represents the os cordis seen in the heart of some of the larger animals, as the ox and elephant. Lastly, there is the tendinous band, already referred to, the posterior surface of the conus arteriosus. The fibrous rings surrounding the arterial orifices serve for the attachment of the great vessels and semilunar valves, they are known as The aortic annulus. Each ring receives, by its ventricular margin, the attachment of some of the muscular fibers of the ventricles; its opposite margin presents three deep semicircular notches, to which the middle coat of the artery is firmly fixed. The attachment of the artery to its fibrous ring is strengthened by the external coat and serous membrane externally, and by the endocardium internally. From the margins of the semicircular notches the fibrous structure of the ring is continued into the segments of the valves. The middle coat of the artery in this situation is thin, and the vessel is dilated to form the sinuses of the aorta and pulmonary artery." [Wikipedia:Fibrous_rings_of_heart]
synonym: "annulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "anulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "anulus fibrosus of heart" EXACT [FMA:9497]
synonym: "aortic annulus" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "coronary tendon" RELATED [BTO:0003628]
synonym: "fibrous ring of heart" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "Lower's ring" RELATED [BTO:0003628]
xref: BTO:0003628
xref: FMA:9497
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006444 ! annulus fibrosus
intersection_of: UBERON:0006444 ! annulus fibrosus
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0006048
name: digit 1
namespace: uberon
comment: comment: This class represents all instances of the 1st digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit

[Term]
id: UBERON:0006049
name: digit 2
namespace: uberon
comment: comment: This class represents all instances of the 2nd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit

[Term]
id: UBERON:0006050
name: digit 3
namespace: uberon
comment: comment: This class represents all instances of the 3rd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit

[Term]
id: UBERON:0006051
name: digit 4
namespace: uberon
comment: comment: This class represents all instances of the 4th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit

[Term]
id: UBERON:0006052
name: digit 5
namespace: uberon
comment: comment: This class represents all instances of the 5th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "ray_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit

[Term]
id: UBERON:0006058
name: multi-limb segment region
namespace: uberon
def: "A collection of two or more connected limb segments. Examples: arm (comprising stylopod and zeugopod regions)." [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_part UBERON:0002529 ! limb segment

[Term]
id: UBERON:0006061
name: process of vertebra
namespace: uberon
comment: todo review w.r.t cartilage vs bone
synonym: "vertebral process" EXACT [FMA:24530]
xref: FMA:24530
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0002412 ! vertebra

[Term]
id: UBERON:0006062
name: articular process of vertebra
namespace: uberon
def: "Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region[AAO]. The articular processes or zygapophyses of a vertebra, in human anatomy contain two superior and two inferior, spring from the junctions of the pedicles and laminae. These stick out of an end of a vertebra to lock with a zygapophysis on the next vertebra, to make the backbone more stable. The superior processes project upward from a lower vertebra, and their articular surfaces are directed more or less backward. The inferior processes project downward from a higher vertebra, and their articular surfaces are directed more or less forward and outward. The articular surfaces are coated with hyaline cartilage." [AAO:Pugener_and_Maglia_2008, Wikipedia:Articular_processes]
comment: todo - class as endochondral bone, check species
subset: vertebrate_core
synonym: "articular process" BROAD [Wikipedia:Articular_processes]
synonym: "processus articularis (zygapophysis)" EXACT [FMA:11952]
synonym: "zygapophysis" EXACT [Wikipedia:Articular_processes]
xref: AAO:0000710
xref: FMA:11952
xref: SCTID:317570004
xref: TAO:0001549
xref: ZFA:0001603
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006061 ! process of vertebra

[Term]
id: UBERON:0006063
name: cartilaginous neural arch
namespace: uberon
def: "One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch." [BTO:0001763]
xref: BTO:0001763
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010358 ! arch of centrum of vertebra
relationship: has_part UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0006065
name: hemal arch
namespace: uberon
def: "Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra[AAO]. Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone[ZFA]." [AAO:0000726, Wikipedia:Haemal_arch, ZFIN:curator]
comment: Taxon notes: fish, most reptiles, some birds, and some mammals with long tails.[WP]
synonym: "haemal arch" EXACT [AAO:0000726, ZFA:0000519]
synonym: "ventral arch" RELATED [AAO:0000726]
synonym: "ventral arcocentrum" EXACT [ZFA:0000519]
xref: AAO:0000726
xref: TAO:0000519
xref: ZFA:0000519
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0010358 ! arch of centrum of vertebra
relationship: part_of UBERON:0001095 ! caudal vertebra

[Term]
id: UBERON:0006067
name: musculature of hindlimb zeugopod
namespace: uberon
synonym: "leg musculature" EXACT [FMA:50211]
synonym: "muscle group of leg" EXACT [FMA:50211]
synonym: "set of muscles of leg" EXACT [FMA:50211]
xref: FMA:50211
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004466 ! musculature of leg
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0006068
name: bone of tail
namespace: uberon
synonym: "tail bone" EXACT [MA:0000696]
xref: MA:0000696
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail

[Term]
id: UBERON:0006070
name: coccygeal vertebra
namespace: uberon
comment: todo - check why this is in MA as a separate class
synonym: "caudal vertebra" BROAD SENSU [FMA:12527]
synonym: "coccygea" RELATED [MA:0001420]
synonym: "coccygeal segment" EXACT []
synonym: "fused tail vertebra" EXACT [UBERON:cjm]
xref: FMA:12527
xref: galen:CoccygealVertebra
xref: MA:0001420
xref: ncithesaurus:Coccygeal_Vertebra
xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA
xref: SCTID:361774004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001095 ! caudal vertebra
relationship: part_of UBERON:0001350 ! coccyx

[Term]
id: UBERON:0006071
name: caudal region
namespace: uberon
comment: merge with tail?
synonym: "postsacral region" RELATED [AAO:0000082]
synonym: "tail region" RELATED [AAO:0000082]
xref: XAO:0000087
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0006072
name: cervical region of vertebral column
namespace: uberon
def: "That portion of the spine comprising the cervical vertebrae. The neck area of the spine." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
synonym: "cervical skeleton" EXACT [EHDAA2:0000238]
synonym: "cervical spinal column" EXACT [FMA:24138]
synonym: "cervical spine" EXACT [FMA:24138]
synonym: "cervical vertebral column" EXACT [FMA:24138]
xref: AAO:0000092
xref: BTO:0004148
xref: EHDAA2:0000238
xref: EHDAA:5051
xref: EMAPA:17215
xref: FMA:24138
xref: ncithesaurus:Cervical_Spine
xref: SCTID:260488005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006077 ! subdivision of vertebral column
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0005434 ! cervical region
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005434 ! cervical region
relationship: subdivision_of UBERON:0005434 ! cervical region

[Term]
id: UBERON:0006073
name: thoracic region of vertebral column
namespace: uberon
def: "That part of the spine comprising the thoracic vertebrae." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
synonym: "columna vertebralis thoracicus" EXACT [FMA:9140]
synonym: "thoracic skeleton" EXACT [EHDAA2:0002013]
synonym: "thoracic spine" EXACT [FMA:9140]
synonym: "thoracic vertebral column" EXACT [FMA:9140]
xref: AAO:0000612
xref: BTO:0004150
xref: EHDAA2:0002013
xref: EHDAA:5063
xref: EMAPA:17396
xref: FMA:9140
xref: ncithesaurus:Thoracic_Spine
xref: SCTID:243931006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006077 ! subdivision of vertebral column
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0005482 ! thoracic region
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005482 ! thoracic region
relationship: subdivision_of UBERON:0005482 ! thoracic region

[Term]
id: UBERON:0006074
name: lumbar region of vertebral column
namespace: uberon
def: "That portion of the spine comprising the lumbar vertebrae." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
synonym: "lumbar skeleton" EXACT [EHDAA2:0001037]
synonym: "lumbar spine" EXACT [BTO:0004147]
synonym: "lumbar vertebral column" EXACT [FMA:16203]
xref: BTO:0004147
xref: EHDAA2:0001037
xref: EHDAA:5055
xref: EMAPA:17393
xref: FMA:16203
xref: GAID:31
xref: ncithesaurus:Lumbar_Spine
xref: SCTID:243932004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006077 ! subdivision of vertebral column
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0005462 ! lower back
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005462 ! lower back
relationship: subdivision_of UBERON:0005462 ! lower back

[Term]
id: UBERON:0006075
name: sacral region of vertebral column
namespace: uberon
synonym: "sacral skeleton" EXACT [EHDAA2:0001772]
xref: AAO:0000724
xref: EHDAA2:0001772
xref: EHDAA:5059
xref: EMAPA:17676
xref: GAID:32
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006077 ! subdivision of vertebral column
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0005473 ! sacral region
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005473 ! sacral region
relationship: subdivision_of UBERON:0005473 ! sacral region

[Term]
id: UBERON:0006076
name: caudal region of vertebral column
namespace: uberon
def: "Region of the vertebral column posterior to the caudal-sacral region, that may consists of two or three to more than 100 vertebrae. These vertebrae exhibit a gradual reduction in the sizes of their transverse processes and zygapophyses, but these structures are never entirely absent. All caudal vertebrae bear haemal arches." [AAO:Duellman_and_Trueb_1994]
synonym: "caudal region" RELATED [AAO:0000082]
synonym: "postsacral region" RELATED [AAO:0000082]
synonym: "tail region" RELATED [AAO:0000082]
xref: AAO:0000082
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006077 ! subdivision of vertebral column
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0006071 ! caudal region
relationship: part_of UBERON:0006071 ! caudal region
relationship: subdivision_of UBERON:0006071 ! caudal region

[Term]
id: UBERON:0006077
name: subdivision of vertebral column
namespace: uberon
def: "A collection of all skeletal elements in some subdivision of the vertebral column." [UBERON:cjm]
synonym: "subdivision of vertebral skeleton" EXACT [UBERON:cjm]
synonym: "vertebral column subdivision" EXACT [FMA:16201]
xref: FMA:16201
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000075 ! subdivision of skeletal system
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: subdivision_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001137 {source="FMA"} ! back
relationship: part_of UBERON:0005944 {source="FMA"} ! axial skeleton
relationship: subdivision_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0006106
name: cochlear canal
namespace: uberon
synonym: "cochlear canal" EXACT [NIF_GrossAnatomy:birnlex_2553]
synonym: "spiral canal of cochlea" EXACT [NIF_GrossAnatomy:birnlex_2553]
synonym: "wall of cochlea" EXACT [FMA:75371]
xref: FMA:75371
xref: NIF_GrossAnatomy:birnlex_2553
xref: SCTID:279779009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001844 ! cochlea

[Term]
id: UBERON:0006203
name: conchal part of pinna
namespace: uberon
synonym: "concha" BROAD [FMA:61006]
synonym: "concha auriculae" EXACT [FMA:61006, FMA:TA]
synonym: "concha of auricle" EXACT [FMA:61006]
synonym: "concha of pinna" EXACT [FMA:61006]
xref: FMA:61006
xref: ncithesaurus:Concha
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0006204
name: inguinal ligament
namespace: uberon
def: "a band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh." [Wikipedia:Inguinal_ligament]
synonym: "fallopian ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament]
synonym: "Poupart's ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament]
synonym: "Vesalius' ligament" EXACT [FMA:19855]
xref: FMA:19855
xref: SCTID:361900000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003567 ! abdomen connective tissue
relationship: part_of UBERON:0005442 ! external oblique

[Term]
id: UBERON:0006205
name: pectineal ligament
namespace: uberon
comment: we include a disjointness axiom to avoid confusion that may arise from the synonyms 'ligamentum pectineale' and 'ligamentum pectinum'
synonym: "cooper's ligament (groin)" EXACT [FMA:20188]
synonym: "ligamentum pectineale" EXACT [FMA:20188]
xref: FMA:20188
xref: SCTID:256661003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0006204 ! inguinal ligament

[Term]
id: UBERON:0006209
name: basioccipital cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000164
xref: EHDAA:7141
xref: EMAPA:18337
xref: VHOG:0001124
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0009197 {source="EHDAA2"} ! basioccipital pre-cartilage condensation
relationship: develops_into UBERON:0001692 ! basioccipital bone

[Term]
id: UBERON:0006210
name: body-wall mesenchyme
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000179
xref: EHDAA:3217
xref: EMAPA:16893
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme

[Term]
id: UBERON:0006213
name: carpus cartilage condensation
namespace: uberon
xref: EHDAA2:0000221
xref: EHDAA:8544
xref: EMAPA:18102
xref: VHOG:0001123
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001435 ! carpal bone
relationship: develops_from UBERON:0006214 ! carpus pre-cartilage condensation
relationship: develops_into UBERON:0001435 ! carpal bone

[Term]
id: UBERON:0006214
name: carpus pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000222
xref: EHDAA:6324
xref: EMAPA:17724
xref: VHOG:0000955
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0009523 ! mesenchyme of handplate
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001435 ! carpal bone
relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region
relationship: develops_into UBERON:0001435 ! carpal bone
relationship: part_of UBERON:0009523 ! mesenchyme of handplate

[Term]
id: UBERON:0006219
name: deltoid pre-muscle mass
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000340
xref: EHDAA:6002
xref: EMAPA:17749
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0006224
name: elbow joint primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000431
xref: EHDAA:8483
xref: EMAPA:17710
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0001490 ! elbow joint
relationship: part_of UBERON:0003318 ! mesenchyme of elbow

[Term]
id: UBERON:0006225
name: endocardial tissue
namespace: uberon
comment: consider merging with endocardium
subset: emapa_ehdaa2
xref: EMAPA:17868
xref: RETIRED_EHDAA2:0000435
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure

[Term]
id: UBERON:0006227
name: ethmoid bone primordium
namespace: uberon
comment: check UBERON:0007215
subset: emapa_ehdaa2
xref: EHDAA2:0000456
xref: EHDAA:8363
xref: EMAPA:18023
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
relationship: develops_into UBERON:0001679 ! ethmoid

[Term]
id: UBERON:0006228
name: exoccipital pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000457
xref: EHDAA:8355
xref: EMAPA:18014
xref: VHOG:0000963
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_into UBERON:0001693 ! exoccipital bone
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium

[Term]
id: UBERON:0006230
name: extrinsic ocular pre-muscle mass
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000483
xref: EHDAA:2925
xref: EMAPA:17845
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003314 ! eye mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 ! pre-muscle condensation
relationship: develops_from UBERON:0003314 {source="EHDAA2"} ! eye mesenchyme
relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle of eye

[Term]
id: UBERON:0006231
name: facial bones primordia
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000488
xref: EHDAA:9552
xref: EMAPA:18024
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0006234
name: femur pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000508
xref: EMAPA:17502
xref: VHOG:0000951
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0000981 ! femur

[Term]
id: UBERON:0006235
name: foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000569
xref: EHDAA:526
xref: EMAPA:16363
xref: VHOG:0000291
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000015 ! anatomical boundary
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0001041 ! foregut
intersection_of: adjacent_to UBERON:0001045 ! midgut
relationship: adjacent_to UBERON:0001041 ! foregut
relationship: adjacent_to UBERON:0001045 ! midgut
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0006238
name: future brain
namespace: uberon
comment: obsoleted in EHDAA2
subset: emapa_ehdaa2
subset: vertebrate_core
synonym: "presumptive brain" EXACT [ZFA:0000146]
xref: EFO:0003431
xref: EHDAA:300
xref: EHDAA:830
xref: EMAPA:16089
xref: EMAPA:16471
xref: RETIRED_EHDAA2:0000591
xref: TAO:0000146
xref: ZFA:0000146
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0000955 ! brain
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0006239
name: future central tendon
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000593
xref: EHDAA:4118
xref: EMAPA:25035
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000043 ! tendon
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
intersection_of: UBERON:0000043 ! tendon
intersection_of: develops_into UBERON:0006670 ! central tendon
relationship: develops_into UBERON:0006670 ! central tendon
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0006241
name: future spinal cord
namespace: uberon
subset: vertebrate_core
synonym: "presumptive spinal cord" EXACT [ZFA:0000417]
xref: EFO:0003438
xref: EHDAA2:0000674
xref: EHDAA:898
xref: EMAPA:16092
xref: EMAPA:16525
xref: EMAPA:16755
xref: TAO:0000417
xref: ZFA:0000417
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0001049 {source="EHDAA2"} ! neural tube
relationship: develops_into UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001017 ! central nervous system

[Term]
id: UBERON:0006242
name: gall bladder primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000700
xref: EHDAA:3047
xref: EMAPA:16713
xref: EMAPA:16842
xref: XAO:0004205
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0004912 ! biliary bud

[Term]
id: UBERON:0006244
name: hip joint primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000785
xref: EHDAA:8462
xref: EMAPA:17739
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0001486 ! hip joint
relationship: part_of UBERON:0003320 ! mesenchyme of hip

[Term]
id: UBERON:0006245
name: humerus cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000787
xref: EHDAA:6240
xref: EMAPA:17713
xref: VHOG:0001120
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005258 ! upper arm mesenchyme
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
relationship: develops_from UBERON:0006246 {source="EHDAA2"} ! humerus pre-cartilage condensation
relationship: develops_into UBERON:0000976 ! humerus
relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton
relationship: part_of UBERON:0005258 {source="EHDAA2"} ! upper arm mesenchyme

[Term]
id: UBERON:0006246
name: humerus pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000788
xref: EHDAA:4192
xref: EMAPA:17427
xref: VHOG:0000950
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005258 ! upper arm mesenchyme
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
relationship: develops_into UBERON:0000976 ! humerus
relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton
relationship: part_of UBERON:0005258 {source="EHDAA2"} ! upper arm mesenchyme

[Term]
id: UBERON:0006247
name: iliac pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000809
xref: EHDAA:9568
xref: EMAPA:18029
xref: VHOG:0001126
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0006248
name: incus pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000813
xref: EHDAA:9024
xref: EMAPA:17825
xref: VHOG:0000957
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
relationship: develops_from UBERON:0010042 {source="EHDAA2-generalized"} ! 1st arch mesenchyme

[Term]
id: UBERON:0006251
name: interparietal bone primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000881
xref: EMAPA:18018
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0002229 ! interparietal bone

[Term]
id: UBERON:0006254
name: ischial cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000890
xref: EHDAA:9570
xref: EMAPA:26930
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0006255 {source="EHDAA2"} ! ischial pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0006255
name: ischial pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000891
xref: EHDAA:7153
xref: EMAPA:18348
xref: VHOG:0000962
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0006256
name: knee joint primordium
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000897
xref: EHDAA:8467
xref: EMAPA:17740
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_into UBERON:0001485 ! knee joint
relationship: part_of UBERON:0003321 ! mesenchyme of knee

[Term]
id: UBERON:0006258
name: lateral plate mesenchyme
namespace: uberon
comment: Editors note: todo - merge with LP mesoderm, review mesoderm/mesenchyme terminology
subset: emapa_ehdaa2
xref: EHDAA2:0000919
xref: EHDAA:379
xref: EMAPA:16179
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 {source="Obol"} ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003081 {source="Obol"} ! lateral plate mesoderm

[Term]
id: UBERON:0006260
name: lingual swellings
namespace: uberon
comment: the collection consisting of the two lateral swellings and the medial swelling
subset: emapa_ehdaa2
synonym: "lingual swelling" RELATED [EHDAA2:0000996]
xref: EHDAA2:0000996
xref: EMAPA:17186
xref: VHOG:0000449
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0004362 ! mandibular arch
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue

[Term]
id: UBERON:0006262
name: malleus pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001055
xref: EHDAA:9026
xref: EMAPA:17826
xref: VHOG:0000958
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003107 {source="EHDAA2"} ! Meckel's cartilage

[Term]
id: UBERON:0006263
name: Meckel's cartilage pre-cartilage condensation
namespace: uberon
comment: Development notes: NC contributes in EHDAA2. Todo: use EHDAA2 structure
subset: emapa_ehdaa2
xref: EHDAA2:0001074
xref: EMAPA:17358
xref: VHOG:0001121
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: develops_from UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme
relationship: develops_into UBERON:0003107 ! Meckel's cartilage
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0006269
name: optic foramen
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001312
xref: EHDAA:10646
xref: EMAPA:18716
xref: VHOG:0001408
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0006271
name: orbital fissure
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001328
xref: EHDAA:10648
xref: EMAPA:18717
xref: SCTID:280546005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0006285
name: pubic pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001574
xref: EHDAA:9572
xref: EMAPA:18349
xref: EMAPA:26928
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0006286
name: radius cartilage condensation
namespace: uberon
xref: EHDAA2:0001585
xref: EHDAA:7267
xref: EMAPA:18054
xref: VHOG:0001318
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001423 ! radius bone
relationship: develops_into UBERON:0001423 ! radius bone
relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton

[Term]
id: UBERON:0006287
name: radius-ulna pre-cartilage condensation
namespace: uberon
comment: AO notes: EMAPA has a separate radius-ulna cartilage condensation.
xref: EHDAA2:0001587
xref: EHDAA:4178
xref: EMAPA:17420
xref: VHOG:0000949
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0005866 ! pre-cartilage condensation
relationship: part_of UBERON:0003327 ! mesenchyme of forearm

[Term]
id: UBERON:0006288
name: rib cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001716
xref: EHDAA:8347
xref: EMAPA:17678
xref: VHOG:0001122
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0006289 {source="EHDAA2"} ! rib pre-cartilage condensation
relationship: develops_into UBERON:0002228 ! rib
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0005482 ! thoracic region
relationship: part_of UBERON:0006073 ! thoracic region of vertebral column

[Term]
id: UBERON:0006289
name: rib pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001717
xref: EHDAA:6026
xref: EMAPA:17397
xref: VHOG:0000681
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0003089 ! sclerotome
relationship: develops_into UBERON:0002228 ! rib
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0005482 ! thoracic region
relationship: part_of UBERON:0006073 ! thoracic region of vertebral column

[Term]
id: UBERON:0006290
name: scapula cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001777
xref: EHDAA:8368
xref: EMAPA:18343
xref: VHOG:0001125
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0006291 {source="EHDAA2"} ! scapula pre-cartilage condensation
relationship: develops_into UBERON:0006849 ! scapula
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0007831 {source="EHDAA2"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0006291
name: scapula pre-cartilage condensation
namespace: uberon
comment: Development notes: the scapula has been shown to develop from multiple tissues, such as the dermomyotome of the somites, the mesodermal portion of the soma- topleure (a domain of the lateral plate mesoderm or LPM) and neural crest cell-derived mesenchyme (Huang et al., 2000; Matsuoka et al., 2005; Wang et al., 2005).[PMID:21455939]
subset: emapa_ehdaa2
xref: EHDAA2:0001778
xref: EHDAA:6041
xref: EMAPA:18027
xref: VHOG:0000960
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: develops_into UBERON:0006849 ! scapula
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0007831 {source="EHDAA2"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0006292
name: shoulder joint primordium
namespace: uberon
comment: Note that this is part of the forelimb skeleton in EHDAA2, but this violates part-disjointness
subset: emapa_ehdaa2
xref: EHDAA2:0001836
xref: EHDAA:8493
xref: EMAPA:17712
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003322 ! mesenchyme of shoulder
is_a: UBERON:0005856 {source="EHDAA2"} ! mesenchymal condensation
relationship: develops_from UBERON:0003322 {source="EHDAA2"} ! mesenchyme of shoulder
relationship: develops_into UBERON:0001470 ! glenohumeral joint
relationship: part_of UBERON:0003322 ! mesenchyme of shoulder

[Term]
id: UBERON:0006293
name: spleen primordium
namespace: uberon
def: "A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium." [ISBN:0123747295]
comment: todo - check difference between splenic and spleen in EMAPA
synonym: "left spleen primordium" NARROW [XAO:0000326]
synonym: "splenic primordium" EXACT [EHDAA2:0001904]
xref: EHDAA2:0001904
xref: EHDAA:3003
xref: EMAPA:18535
xref: EMAPA:18659
xref: XAO:0000326
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 {source="XAO"} ! primordium
relationship: develops_from UBERON:0004872 {source="XAO"} ! splanchnic layer of lateral plate mesoderm
relationship: part_of UBERON:0005602 {source="EHDAA2-modified"} ! dorsal mesogastrium

[Term]
id: UBERON:0006294
name: stapes pre-cartilage condensation
namespace: uberon
comment: independent of the mesenchymal condensation that will form the otic capsule
subset: emapa_ehdaa2
synonym: "stapedial anlage" EXACT [doi:10.1111/j.1469-7580.2005.00441.x]
xref: EHDAA2:0001910
xref: EHDAA:5699
xref: EMAPA:17827
xref: VHOG:0000956
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0009506 ! associated mesenchyme of middle ear
relationship: develops_from UBERON:0005689 {source="EHDAA2", source="doi:10.1111/j.1469-7580.2005.00441.x", notes="cranial end"} ! 2nd arch mesenchyme
relationship: part_of UBERON:0001686 {source="EHDAA2"} ! auditory ossicle

[Term]
id: UBERON:0006295
name: sternebral bone pre-cartilage condensation
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001912
xref: EHDAA:9565
xref: EMAPA:18345
xref: VHOG:0000961
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0000975 ! sternum

[Term]
id: UBERON:0006306
name: ulna cartilage condensation
namespace: uberon
xref: EHDAA2:0002098
xref: EHDAA:7269
xref: EMAPA:18055
xref: VHOG:0001155
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001424 ! ulna
relationship: develops_into UBERON:0001424 ! ulna
relationship: part_of UBERON:0003327 ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton

[Term]
id: UBERON:0006311
name: chamber of eyeball
namespace: uberon
def: "Chamber of eyeball[FMA]" [FMA:58071]
synonym: "eye chamber" EXACT [MA:0002459]
synonym: "eyeball chamber" EXACT [FMA:58071]
xref: BTO:0002085
xref: FMA:58071
xref: MA:0002459
xref: ncithesaurus:Chamber_of_the_Eye
xref: SCTID:280540004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0006318
name: orbitalis muscle
namespace: uberon
def: "An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion." [Wikipedia:Orbitalis_muscle]
comment: subclass of 'muscle layer' in FMA
synonym: "musculus orbitalis" EXACT [FMA:49034, FMA:TA]
synonym: "orbital muscle" EXACT [FMA:49034]
synonym: "orbital muscle of muller" EXACT [FMA:49034]
synonym: "orbitalis" EXACT [FMA:49034]
synonym: "orbitalis" RELATED [Wikipedia:Orbitalis_muscle]
xref: FMA:49034
xref: MA:0001274
xref: ncithesaurus:Orbitalis_Muscle
xref: SCTID:368790005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003660 ! eyelid muscle
is_a: UBERON:0006660 ! muscle layer

[Term]
id: UBERON:0006320
name: inferior oblique extraocular muscle
namespace: uberon
comment: Taxon notes (via VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331
subset: vertebrate_core
synonym: "inferior oblique" EXACT [FMA:49040]
synonym: "inferior oblique muscle" EXACT []
synonym: "obliquus inferior" EXACT [FMA:49040]
xref: FMA:49040
xref: MA:0001276
xref: ncithesaurus:Inferior_Oblique_Muscle
xref: SCTID:181156006
xref: TAO:0000861
xref: VHOG:0001132
xref: ZFA:0000861
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle

[Term]
id: UBERON:0006321
name: superior oblique extraocular muscle
namespace: uberon
def: "The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve)." [Wikipedia:Superior_oblique_muscle]
subset: vertebrate_core
synonym: "M. obliquus superior" RELATED [Wikipedia:Superior_oblique_muscle]
synonym: "musculus obliquus superior" EXACT [AAO:0010119]
synonym: "obliquus oculi superior" RELATED [Wikipedia:Superior_oblique_muscle]
synonym: "obliquus superior" EXACT [FMA:49039]
synonym: "superior oblique" EXACT [FMA:49039]
synonym: "superior oblique muscle" EXACT []
xref: AAO:0010119
xref: FMA:49039
xref: MA:0001277
xref: ncithesaurus:Superior_Oblique_Muscle
xref: SCTID:181155005
xref: TAO:0000738
xref: VHOG:0001131
xref: ZFA:0000738
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle

[Term]
id: UBERON:0006322
name: inferior rectus extraocular muscle
namespace: uberon
subset: vertebrate_core
synonym: "inferior rectus" EXACT [FMA:49036]
synonym: "inferior rectus muscle" EXACT []
xref: FMA:49036
xref: MA:0001279
xref: ncithesaurus:Inferior_Rectus_Muscle
xref: SCTID:181154009
xref: TAO:0000457
xref: VHOG:0001130
xref: ZFA:0000457
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle

[Term]
id: UBERON:0006323
name: superior rectus extraocular muscle
namespace: uberon
subset: vertebrate_core
synonym: "superior rectus" EXACT [FMA:49035]
synonym: "superior rectus muscle" EXACT []
xref: FMA:49035
xref: MA:0001282
xref: ncithesaurus:Superior_Rectus_Muscle
xref: SCTID:181153003
xref: TAO:0000345
xref: VHOG:0001128
xref: ZFA:0000345
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle

[Term]
id: UBERON:0006326
name: base of arytenoid
namespace: uberon
synonym: "arytenoid cartilage base" EXACT [FMA:55349]
synonym: "base of arytenoid" EXACT [FMA:55349]
synonym: "base of arytenoid cartilage" EXACT [FMA:55349]
xref: FMA:55349
xref: MA:0001761
xref: SCTID:279532006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001994 ! hyaline cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001740 ! arytenoid cartilage

[Term]
id: UBERON:0006327
name: laryngeal extrinsic muscle
namespace: uberon
synonym: "extrinsic muscle of larynx" EXACT [FMA:55225]
xref: FMA:55225
xref: MA:0001769
xref: SCTID:244808004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001568 ! muscle of larynx

[Term]
id: UBERON:0006328
name: laryngeal intrinsic muscle
namespace: uberon
synonym: "intrinsic muscle of larynx" EXACT [FMA:55226]
xref: FMA:55226
xref: MA:0001770
xref: SCTID:244810002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001568 ! muscle of larynx

[Term]
id: UBERON:0006329
name: superior pharyngeal constrictor
namespace: uberon
def: "The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]." [Wikipedia:Superior_pharyngeal_constrictor_muscle]
synonym: "constrictor muscle of pharynx superior" EXACT [FMA:46621]
synonym: "musculus constrictor pharyngis superior" EXACT [FMA:46621, FMA:TA]
synonym: "superior constrictor" EXACT [FMA:46621]
synonym: "superior constrictor muscle" EXACT [ncithesaurus:Superior_Constrictor_Muscle]
synonym: "superior constrictor of pharynx" EXACT [FMA:46621]
synonym: "superior constrictor pharyngeus" EXACT [FMA:46621]
xref: EMAPA:18966
xref: FMA:46621
xref: MA:0002280
xref: ncithesaurus:Superior_Constrictor_Muscle
xref: SCTID:244800006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001569 ! constrictor muscle of pharynx

[Term]
id: UBERON:0006332
name: nasal capsule
namespace: uberon
def: "an embryonic cartilaginous frame, the nasal capsule, an evolutionary-conserved structure composed of ventral and dorsal components: the mesethmoid and ectethmoid cartilages, respectively.[PMID]." [PMID:21270050]
comment: Taxon notes: In avians, the mesethmoid supports upper beak formation, whereas the ectethmoid comprises elements of the olfactory system, including the lamina cribosa, the crista galli apophysis and the conchae. Editor's note - consider splitting this class. Developing cartilage in mammals? Connective tissue sheath in TAO. Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium[AAO]. Cartilaginous envelope containing the nasal organ[FishBase] Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium[ZFA]. Avian def: The nasal capsule is dorsoventrally divided into two parts: the upper part, the ectethmoid, serves olfaction and is composed of the lamina cribosa, the crista galli apophysis and the conchae. The lower part, the mesethmoid, is a thick cartilage bar extending from the corpus sphenoidalis to the rostral extremity of the nose (Fig. 1A-B􏰐). In the avian embryo, the mesethmoid constitutes the cartilage primordium of the upper beak
subset: vertebrate_core
synonym: "cartilaginous nasal capsule" RELATED []
xref: AAO:0000313
xref: EMAPA:17852
xref: MA:0000283
xref: TAO:0002035
xref: ZFA:0005507
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001823 ! nasal cartilage
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0000004 {source="MA"} ! olfactory apparatus

[Term]
id: UBERON:0006428
name: basisphenoid bone
namespace: uberon
def: "Endochondral ossification of the ventromedial portion of the braincase." [AAO:0000040]
synonym: "basisphenoid" EXACT [AAO:0000040]
xref: AAO:0000040
xref: EMAPA:18706
xref: MA:0001463
xref: SCTID:95945003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0009194 {source="cjm"} ! basisphenoid cartilage condenstion
relationship: part_of UBERON:0001677 ! sphenoid bone

[Term]
id: UBERON:0006430
name: xiphoid cartilage
namespace: uberon
subset: uberon_slim
synonym: "cartilage of xiphoid process" EXACT [FMA:32574]
synonym: "ensiform cartilage" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphoid cartilage" EXACT []
synonym: "xiphoid process cartilage" EXACT [FMA:32574]
xref: AAO:0000940
xref: EMAPA:18725
xref: FMA:32574
xref: MA:0001884
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000398 ! sternal cartilage
is_a: UBERON:0002236 ! costal cartilage
intersection_of: UBERON:0002236 ! costal cartilage
intersection_of: part_of UBERON:0002207 ! xiphoid process
relationship: part_of UBERON:0002207 ! xiphoid process

[Term]
id: UBERON:0006431
name: xiphoid process bone
namespace: uberon
synonym: "bone tissue of xiphoid process" EXACT [FMA:32577]
synonym: "xiphoid bone" RELATED [Wikipedia:Xiphoid_process]
xref: FMA:32577
xref: GAID:248
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
is_a: UBERON:0003837 ! thoracic segment connective tissue
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0002207 ! xiphoid process
relationship: part_of UBERON:0002207 ! xiphoid process

[Term]
id: UBERON:0006435
name: os penis
namespace: uberon
def: "a bone found in the penis of most mammals. It is absent in humans, but present in other primates, such as the closely-related chimpanzee. The bone aids in sexual intercourse[WP]." [Wikipedia:Baculum]
synonym: "baculum" EXACT [Wikipedia:Baculum]
synonym: "penile bone" EXACT [Wikipedia:Baculum]
synonym: "penis bone" EXACT [Wikipedia:Baculum]
xref: EMAPA:29769
xref: MA:0000406
xref: SCTID:27962002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007719 ! os penis/os clitoris
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000989 ! penis
relationship: part_of UBERON:0000989 ! penis

[Term]
id: UBERON:0006440
name: os clitoris
namespace: uberon
synonym: "baubellum" EXACT [Wikipedia:Baculum]
synonym: "os clitoridis" EXACT [Wikipedia:Baculum]
xref: EMAPA:30823
xref: MA:0000387
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007719 ! os penis/os clitoris
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 ! clitoris

[Term]
id: UBERON:0006444
name: annulus fibrosus
namespace: uberon
def: "A ring of fibrous or fibrocartilaginous tissue (as of an intervertebral disk or surrounding an orifice of the heart)." [BTO:0003627]
synonym: "anulus fibrosus" EXACT [FMA:76704]
synonym: "fibrous ring" RELATED [BTO:0003627]
xref: BTO:0003627
xref: FMA:76704
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001995 ! fibrocartilage

[Term]
id: UBERON:0006494
name: apex of arytenoid
namespace: uberon
synonym: "apex of arytenoid cartilage" EXACT [FMA:55348]
synonym: "arytenoid cartilage apex" EXACT [FMA:55348]
xref: FMA:55348
xref: MA:0001760
xref: SCTID:279534007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001996 ! elastic cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
relationship: part_of UBERON:0001740 ! arytenoid cartilage

[Term]
id: UBERON:0006495
name: osseus cochlear canal
namespace: uberon
synonym: "osseous cochlear canal" EXACT [FMA:75666]
xref: FMA:75666
xref: MA:0001183
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit

[Term]
id: UBERON:0006497
name: foot interosseus muscle
namespace: uberon
synonym: "foot interosseous" EXACT [FMA:37456]
synonym: "interosseous of foot" EXACT [FMA:37456]
xref: FMA:37456
xref: MA:0002302
xref: ncithesaurus:Foot_Interosseous_Muscle
xref: SCTID:181714004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001498 ! muscle of foot
is_a: UBERON:0006508 ! interosseus muscle
intersection_of: UBERON:0006508 ! interosseus muscle
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0006499
name: dorsal foot interosseus muscle
namespace: uberon
synonym: "dorsal interosseous of foot" EXACT [FMA:37457]
xref: FMA:37457
xref: MA:0002303
xref: ncithesaurus:Dorsal_Foot_Interosseous_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006497 ! foot interosseus muscle

[Term]
id: UBERON:0006502
name: plantar foot interosseus muscle
namespace: uberon
synonym: "plantar interosseous of foot" EXACT [FMA:37458]
xref: FMA:37458
xref: MA:0002304
xref: ncithesaurus:Plantar_Foot_Interosseus_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006497 ! foot interosseus muscle

[Term]
id: UBERON:0006505
name: palmar hand interosseus muscle
namespace: uberon
synonym: "palmar interosseous of hand" EXACT [FMA:37419]
xref: FMA:37419
xref: MA:0002315
xref: ncithesaurus:Palmar_Hand_Interosseus_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001502 ! interosseous muscle of hand

[Term]
id: UBERON:0006508
name: interosseus muscle
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003661 ! limb muscle
relationship: part_of UBERON:0002470 ! autopod region

[Term]
id: UBERON:0006524
name: alveolar system
namespace: uberon
def: "System pertaining to a bronchus and alveoli." [BTO:0000136]
synonym: "bronchoalveolar system" RELATED [BTO:0000136]
synonym: "pulmonary alveolar system" EXACT [MP:0010899]
xref: BTO:0000136
xref: EMAPA:19001
xref: EMAPA:19003
xref: EMAPA:19005
xref: EMAPA:19007
xref: EMAPA:19009
xref: MA:0000416
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung

[Term]
id: UBERON:0006530
name: seminal fluid
namespace: uberon
def: "The fluid portion of the semen, in which the spermatozoa are suspended[BTO]." [BTO:0001232]
comment: Usage notes: we follow FMA and make this class a generic superclass of the secretions of different glands (prostate, bulbo-urethreal, seminal vesicle). MA (and ncit) follows a mixture model, where these secretions are part of the seminal fluid // Taxon notes: This term covers a variety of species. Example: In D. melanogaster, seminal fluid proteins affect female receptivity, ovulation, oogenesis, sperm storage, sperm competition and mating plug formation [doi:10.1046/j.1365-2540.2001.00961.x]. Note that ths intology contains a number of subtypes of seminal fluid, defined according to glands (which are more taxonomically restricted)
synonym: "male genital fluid" RELATED []
synonym: "male genital secretion" RELATED []
synonym: "seminal fluid" RELATED [BTO:0001232]
synonym: "seminal plasma" EXACT [BTO:0001232]
xref: BTO:0001232
xref: FMA:62967
xref: MA:0002523
xref: MAT:0000057
xref: MIAA:0000057
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000456 ! bodily secretion
relationship: part_of UBERON:0001968 ! semen

[Term]
id: UBERON:0006531
name: oculomotor muscle
namespace: uberon
def: "The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris." [MESH:A.02.633.567.700]
comment: we follow MA in making this a subckass of extra-ocular muscle but the distinction is not clear
xref: MA:0002432
xref: MESH:A.02.633.567.700
xref: ncithesaurus:Oculomotor_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001601 {source="MA"} ! extra-ocular muscle

[Term]
id: UBERON:0006532
name: oblique extraocular muscle
namespace: uberon
xref: MA:0001275
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006531 ! oculomotor muscle

[Term]
id: UBERON:0006533
name: rectus extraocular muscle
namespace: uberon
xref: MA:0001278
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006531 ! oculomotor muscle

[Term]
id: UBERON:0006539
name: mammary gland fluid/secretion
namespace: uberon
synonym: "lactiferous gland fluid" RELATED []
synonym: "lactiferous gland secretion" RELATED []
synonym: "mammary gland fluid" RELATED []
synonym: "mammary gland secretion" RELATED []
synonym: "secretion of mammary gland" RELATED []
xref: MA:0002505
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000456 ! bodily secretion
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0001911 ! mammary gland
relationship: secreted_by UBERON:0001911 ! mammary gland

[Term]
id: UBERON:0006553
name: renal duct
namespace: uberon
def: "A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
comment: in ZFA this is defined as part of mesonephros
xref: TAO:0005289
xref: ZFA:0005289
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney

[Term]
id: UBERON:0006554
name: urinary system structure
namespace: uberon
comment: editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning
xref: SCTID:122489005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0001008 ! excretory system

[Term]
id: UBERON:0006555
name: excretory tube
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000025 ! tube
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0000025 ! tube
intersection_of: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0001008 ! excretory system

[Term]
id: UBERON:0006558
name: lymphatic part of lymphoid system
namespace: uberon
synonym: "lymphatic system" EXACT [FMA:7162, MA:0002435]
synonym: "lymphatic tree system" EXACT [FMA:7162]
xref: AAO:0010522
xref: EFO:0000870
xref: EMAPA:18248
xref: FMA:7162
xref: MA:0002961
xref: MESH:A.15.382.520
xref: SCTID:362597000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002465 ! lymphoid system
relationship: part_of UBERON:0004535 ! cardiovascular system

[Term]
id: UBERON:0006562
name: pharynx
namespace: uberon
def: "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
comment: Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
subset: grouping_class
subset: uberon_slim
xref: AAO:0000967
xref: FBbt:00005380
xref: MAT:0000049
xref: MIAA:0000049
xref: SCTID:181211006
xref: WBbt:0003681
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: continuous_with UBERON:0001043 ! esophagus

[Term]
id: UBERON:0006563
name: tunica media of pulmonary trunk
namespace: uberon
def: "Tunica media of artery which is continuous with the myocardium of right ventricle.[FMA]" [FMA:85030, FMA:FMA]
xref: FMA:85030
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002522 ! tunica media
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0002333 ! pulmonary trunk
relationship: part_of UBERON:0002333 ! pulmonary trunk

[Term]
id: UBERON:0006566
name: left ventricle myocardium
namespace: uberon
def: "Myocardium of ventricle which is continuous with the tunica media of aorta.[FMA]" [FMA:9558, FMA:FMA]
synonym: "Left ventricular myocardium" EXACT [FMA:9558]
synonym: "myocardium of left ventricle" EXACT [FMA:9558]
xref: FMA:9558
xref: MA:0002983
xref: SCTID:362021000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001083 ! myocardium of ventricle
intersection_of: UBERON:0001083 ! myocardium of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: continuous_with UBERON:0003618 ! aorta tunica media
relationship: part_of UBERON:0002084 ! heart left ventricle

[Term]
id: UBERON:0006567
name: right ventricle myocardium
namespace: uberon
def: "Myocardium of ventricle which is continuous with the tunica media of the pulmonary trunk.[FMA]" [FMA:9535, FMA:FMA]
synonym: "myocardium of right ventricle" EXACT [FMA:9535]
synonym: "Right ventricular myocardium" EXACT [FMA:9535]
xref: FMA:9535
xref: MA:0002984
xref: SCTID:362020004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001083 ! myocardium of ventricle
intersection_of: UBERON:0001083 ! myocardium of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: continuous_with UBERON:0006563 ! tunica media of pulmonary trunk
relationship: part_of UBERON:0002080 ! heart right ventricle

[Term]
id: UBERON:0006575
name: mantle
namespace: uberon
def: "A fold or lobe or pair of lobes of the body wall of a mollusk or brachiopod that in shell-bearing forms lines the shell and bears shell-secreting glands." [BTO:0000825, Wipikedia:Mantle_(mollusc)]
synonym: "mantle tissue" RELATED [BTO:0000825]
synonym: "pallium" RELATED [Wipikedia:Mantle_(mollusc)]
xref: BTO:0000825
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000309 ! body wall

[Term]
id: UBERON:0006581
name: mantle muscle
namespace: uberon
xref: BTO:0000827
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003896 ! muscle of body wall
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0006575 ! mantle
relationship: part_of UBERON:0006575 ! mantle

[Term]
id: UBERON:0006585
name: vestibular organ
namespace: uberon
synonym: "balance organ" EXACT [UBERON:cjm]
xref: NIF_GrossAnatomy:birnlex_2519
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000020 ! sense organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0004681 ! vestibular system
relationship: part_of UBERON:0004681 ! vestibular system

[Term]
id: UBERON:0006595
name: presumptive endoderm
namespace: uberon
xref: AAO:0000471
xref: EFO:0003437
xref: TAO:0000416
xref: ZFA:0000416
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure

[Term]
id: UBERON:0006597
name: quadrate
namespace: uberon
def: "The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei." [ZFA:0000621]
comment: In snakes, the quadrate bone has become elongated and very mobile, and contributes greatly to their ability to swallow very large prey items. In mammals the articular and quadrate bones have migrated to the middle ear and are known as the malleus and incus. In fact, paleontologists regard this modification as the defining characteristic of mammalian hearing structures.[1] This migration was first described by Reichert in 1837. In pig embryos he discovered that the mandible ossifies on the side of Meckel's cartilage, while the posterior part of that cartilage is ossified and then detaches from the rest of the cartilage to enter the middle ear where it becomes the malleus
synonym: "quadrate - incus" BROAD [VHOG:0000689]
synonym: "quadrate bone" EXACT [AAO:0000525]
xref: AAO:0000525
xref: EFO:0003547
xref: TAO:0000621
xref: VHOG:0000689
xref: ZFA:0000621
property_value: "homologous_to" UBERON:0001688
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! viscerocranium bone
relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage
relationship: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0003108 ! suspensorium

[Term]
id: UBERON:0006598
name: presumptive structure
namespace: uberon
synonym: "presumptive structures" EXACT [ZFA:0001116]
xref: AAO:0000479
xref: TAO:0001116
xref: ZFA:0001116
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0006601
name: presumptive ectoderm
namespace: uberon
def: "Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping." [ZFA:0001376]
comment: note: AAO:0000473
synonym: "presumptive epidermis" RELATED [ZFA:0001376]
xref: AAO:0000470
xref: EFO:0003466
xref: TAO:0001376
xref: XAO:0004132
xref: ZFA:0001376
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure

[Term]
id: UBERON:0006603
name: presumptive mesoderm
namespace: uberon
xref: AAO:0000476
xref: EFO:0003467
xref: TAO:0001377
xref: ZFA:0001377
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure

[Term]
id: UBERON:0006604
name: lamina orbitonasalis
namespace: uberon
def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anterolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [ZFA:0001503]
synonym: "laminas orbitonasalis" EXACT [ZFA:0001503]
xref: AAO:0000262
xref: TAO:0001503
xref: ZFA:0001503
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003932 ! chondrocranium cartilage
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0006605
name: tectum synoticum
namespace: uberon
def: "Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium." [ZFA:0001506]
xref: AAO:0000602
xref: AAO:0010129
xref: TAO:0001506
xref: ZFA:0001506
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003932 ! chondrocranium cartilage
relationship: part_of UBERON:0001703 ! neurocranium

[Term]
id: UBERON:0006606
name: mandibular symphysis
namespace: uberon
def: "Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired[TAO]. The external surface of the mandible is marked in the median line by a faint ridge, indicating the symphysis menti, mandibular symphysis, or line of junction of the two pieces of which the bone is composed at an early period of life. This ridge divides below and encloses a triangular eminence, the mental protuberance, the base of which is depressed in the center but raised on either side to form the mental tubercle. It serves as the origin for the Geniohyoid and the Genioglossus[WP]" [Wikipedia:Symphysis_menti, ZFA:0005488]
comment: todo - check
subset: vertebrate_core
synonym: "mental symphysis" RELATED [Wikipedia:Symphysis_menti]
synonym: "symphysis menti" EXACT [MA:0001490]
xref: AAO:0000277
xref: FMA:75779
xref: MA:0001490
xref: TAO:0001851
xref: ZFA:0005488
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002213 ! cartilaginous joint
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 {source="MA"} ! mandible
relationship: part_of UBERON:0001710 ! lower jaw

[Term]
id: UBERON:0006611
name: exoskeleton
namespace: uberon
def: "Exoskeleton or shell, including those of mollusks, turtles, insects and crustaceans." [Wikipedia:Exoskeleton]
comment: Editors note: consider adding a separate class for dermal skeleton. See also xref: XAO:0004025
synonym: "shell" RELATED [BTO:0004659]
synonym: "test" NARROW []
xref: BTO:0004659
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002199 ! integument

[Term]
id: UBERON:0006612
name: shell
namespace: uberon
comment: ncit: A rigid covering that envelops an object
subset: grouping_class
xref: ncithesaurus:Shell
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006611 ! exoskeleton

[Term]
id: UBERON:0006614
name: aponeurosis
namespace: uberon
def: "Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon." [Wikipedia:Aponeurosis]
synonym: "aponeuroses" RELATED PLURAL [Wikipedia:Aponeurosis]
synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis]
xref: AEO:0000092
xref: EHDAA2:0003092
xref: FMA:9722
xref: ncithesaurus:Aponeurosis
xref: SCTID:331712004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0006615
name: venous sinus
namespace: uberon
def: "a large vein or channel for the circulation of venous blood" [http://medical-dictionary.thefreedictionary.com/venous+sinus]
comment: todo - add subclasses
xref: EMAPA:18633
xref: MA:0000070
xref: ncithesaurus:Venous_Sinus
xref: SCTID:341586007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003920 ! venous blood vessel

[Term]
id: UBERON:0006618
name: atrium auricular region
namespace: uberon
def: "A small conical pouch projections located on the upper anterior portion of each atrium of the heart." [MP:0010489]
synonym: "atrial auricle" EXACT [MP:0010489]
synonym: "auricle of heart" EXACT [FMA:77110]
synonym: "auricula atrii" EXACT [FMA:77110, FMA:TA]
synonym: "heart atrium auriclular region" EXACT [MP:0010489]
xref: FMA:77110
xref: MA:0002955
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002081 ! cardiac atrium

[Term]
id: UBERON:0006633
name: coracoid process
namespace: uberon
def: "The coracoid process is a small hook-like structure on the lateral edge of the superior anterior portion of the scapula. Pointing laterally forward, it, together with the acromion, serves to stabilize the shoulder joint. It is palpable in the deltopectoral groove between the deltoid and pectoralis major muscles. It is the site of attachment for several structures: * The pectoralis minor muscle - to 3rd to 5th ribs. * The short head of biceps brachii muscle - to Radial tuberosity. * The coracobrachialis muscle - to medial humerus. * The coracoclavicular ligament - to the clavicle. (The ligament is formed by the conoid ligament and trapezoid ligament.) * The coracoacromial ligament - to the acromion[WP]." [Wikipedia:Coracoid_process]
synonym: "coracoid process of the scapula" RELATED [Wikipedia:Coracoid_process]
xref: EMAPA:25121
xref: FMA:13455
xref: SCTID:181912007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001124 {source="FMA", source="EMAPA"} ! pectoral limb scapula

[Term]
id: UBERON:0006635
name: anterior abdominal wall
namespace: uberon
synonym: "ventral abdominal wall" EXACT []
xref: EHDAA:5976
xref: EMAPA:17744
xref: FMA:14627
xref: SCTID:362696003
xref: VHOG:0000764
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0003697 ! abdominal wall

[Term]
id: UBERON:0006642
name: muscle layer of oviduct
namespace: uberon
synonym: "Muscle layer of fallopian tube" EXACT [FMA:18318]
synonym: "Muscle layer of oviduct" EXACT [FMA:18318]
synonym: "Muscular coat of uterine tube" EXACT [FMA:18318]
synonym: "Muscular layer of uterine tube" EXACT [FMA:18318]
synonym: "Muscularis of uterine tube" EXACT [FMA:18318]
synonym: "Tunica muscularis (Tuba uterina)" EXACT [FMA:18318]
synonym: "tunica muscularis tubae uterinae" EXACT [FMA:18318, FMA:TA]
synonym: "Uterine tubal muscularis" EXACT [FMA:18318]
xref: EMAPA:29046
xref: FMA:18318
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0003889 ! fallopian tube
relationship: part_of UBERON:0003889 ! fallopian tube

[Term]
id: UBERON:0006646
name: muscle layer of epididymis
namespace: uberon
xref: EMAPA:30447
xref: EMAPA:30747
xref: FMA:19149
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 ! epididymis

[Term]
id: UBERON:0006652
name: muscular layer of vagina
namespace: uberon
synonym: "Muscular coat of vagina" EXACT [FMA:19976]
synonym: "tunica muscularis vaginae" EXACT [FMA:19976, FMA:TA]
xref: EMAPA:30997
xref: FMA:19976
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina

[Term]
id: UBERON:0006658
name: inter-phalangeal joint
namespace: uberon
synonym: "interphalangeal joint" EXACT [galen:InterphalangealJoint]
xref: FMA:42765
xref: galen:InterphalangealJoint
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
relationship: adjacent_to UBERON:0003221 ! phalanx

[Term]
id: UBERON:0006659
name: cruciate ligament
namespace: uberon
def: "One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]." [Wikipedia:Cruciate_ligament]
synonym: "cruciform ligament" EXACT [Wikipedia:Cruciate_ligament]
xref: EMAPA:19010
xref: FMA:44611
xref: galen:CruciateLigament
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000211 ! ligament

[Term]
id: UBERON:0006660
name: muscle layer
namespace: uberon
comment: TODO - add subclasses. See also: muscular coat
synonym: "muscular layer" EXACT [OBOL:automatic]
synonym: "muscularis layer" EXACT [FMA:45634]
xref: EMAPA:29034
xref: FMA:45634
xref: ncithesaurus:Muscle_Layer
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002385 ! muscle tissue

[Term]
id: UBERON:0006661
name: epicranial aponeurosis
namespace: uberon
def: "The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance." [Wikipedia:Galea_aponeurotica]
synonym: "aponeurosis epicranialis" EXACT [FMA:46768, FMA:TA]
synonym: "cranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
synonym: "Epicranial aponeurosis" EXACT [FMA:46768]
synonym: "epicranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
synonym: "Epicranius aponeurosis" EXACT [FMA:46768]
synonym: "galea aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
synonym: "Galea aponeurotica" EXACT [FMA:46768]
synonym: "galeal aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
xref: EMAPA:19210
xref: FMA:46768
xref: SCTID:368677009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006614 ! aponeurosis
relationship: part_of UBERON:0000403 ! scalp

[Term]
id: UBERON:0006667
name: pituitary fossa
namespace: uberon
synonym: "hypophyseal fossa" EXACT [FMA:54721]
synonym: "pituitary fossa" EXACT [FMA:54721]
xref: EMAPA:19195
xref: FMA:54721
xref: SCTID:264194004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity
relationship: part_of UBERON:0003689 ! sella turcica

[Term]
id: UBERON:0006668
name: carotid canal
namespace: uberon
def: "On the interior surface of the temporal bone, behind the rough surface of the apex, is the large circular aperture of the carotid canal, which ascends at first vertically, and then, making a bend, runs horizontally forward and medialward. It transmits into the cranium, the internal carotid artery, and the carotid plexus of nerves. Sympathetics to the head also pass through the carotid canal. They have several motor functions: raise the eyelid (superior tarsal muscle), dilate pupil, innervate sweat glands of face and scalp and constricts blood vessels in head[WP]." [Wikipedia:Carotid_canal]
xref: EMAPA:18707
xref: FMA:55805
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit

[Term]
id: UBERON:0006669
name: alveolar canal
namespace: uberon
def: "The infratemporal surface of the maxilla is pierced about its center by the apertures of the alveolar canals, which transmit the posterior superior alveolar vessels and nerves[WP]." [Wikipedia:Alveolar_canals]
xref: EMAPA:25099
xref: FMA:57743
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001710 {source="EMAPA"} ! lower jaw

[Term]
id: UBERON:0006670
name: central tendon
namespace: uberon
synonym: "central tendon of diaphragm" EXACT [FMA:58279]
synonym: "centrum tendineum" EXACT [FMA:58279]
synonym: "centrum tendineum diaphragmatis" EXACT [FMA:58279, FMA:TA]
xref: EMAPA:17702
xref: FMA:58279
xref: ncithesaurus:Central_Tendon_of_the_Diaphragm
xref: SCTID:244943002
xref: VHOG:0001399
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000043 ! tendon
relationship: attached_to UBERON:0002359 ! fibrous pericardium
relationship: develops_from UBERON:0006239 {evidence="definitional"} ! future central tendon

[Term]
id: UBERON:0006672
name: incisive canal
namespace: uberon
xref: EMAPA:19034
xref: FMA:59107
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0006673
name: mandibular canal
namespace: uberon
xref: EMAPA:19161
xref: FMA:59473
xref: SCTID:368876003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit

[Term]
id: UBERON:0006674
name: inguinal ring
namespace: uberon
xref: EMAPA:19172
xref: EMAPA:29307
xref: FMA:65075
xref: SCTID:278830004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0006204 ! inguinal ligament

[Term]
id: UBERON:0006676
name: muscularis mucosa
namespace: uberon
def: "The lamina muscularis mucosae (or muscularis mucosa) is the thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa. In the gastrointestinal tract, the term mucosa or \"mucous membrane\" refers to the combination of epithelium, lamina propria, and (where it occurs) muscularis mucosa. The etymology suggests this since the Latin names translate to \"the mucosa's own special layer\" (lamina propria mucosae) and \"muscular layer of the mucosa\" (lamina muscularis mucosae). The muscularis mucosa is composed of several thin layers of smooth muscle fibers oriented in different ways which keeps the mucosal surface and underlying glands in a constant state of gentle agitation to expel contents of glandular crypts and enhance contact between epithelium and the contents of the lumen." [Wikipedia:Muscularis_mucosae]
synonym: "laminar muscularis mucosa" RELATED [Wikipedia:Muscularis_mucosae]
synonym: "muscularis mucosae" EXACT [FMA:68413]
xref: BTO:0004839
xref: FMA:68413
xref: galen:MuscularisMucosae
xref: ncithesaurus:Muscularis_Mucosa
xref: SCTID:370140002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0006679
name: carina tracheae
namespace: uberon
def: "In anatomy, the carina is a cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea (usually at the level of the 4th to 5th thoracic vertebrae). The mucous membrane of the carina is the most sensitive area of the trachea and larynx for triggering a cough reflex. Widening and distortion of the carina is a serious sign because it usually indicates carcinoma of the lymph nodes around the region where the trachea divides. Tracheobronchial injury, an injury to the airways, occurs within 2.5 cm of the carina 40b80% of the time." [Wikipedia:Carina_of_trachea]
synonym: "bifurcation of the trachea" RELATED [Wikipedia:Carina_of_trachea]
synonym: "Carina" EXACT [FMA:7465]
synonym: "carina %28anatomy%29" RELATED [Wikipedia:Carina_of_trachea]
synonym: "carina of trachea" RELATED [Wikipedia:Carina_of_trachea]
synonym: "Tracheal carina" EXACT [FMA:7465]
xref: EMAPA:18407
xref: FMA:7465
xref: ncithesaurus:Carina
xref: SCTID:181214003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue

[Term]
id: UBERON:0006680
name: trachealis
namespace: uberon
def: "A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]." [Wikipedia:Trachealis_muscle]
synonym: "Tracheal muscle" EXACT [FMA:7466]
synonym: "Trachealis muscle" EXACT [FMA:7466]
xref: EMAPA:19193
xref: FMA:7466
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0003387 ! smooth muscle of trachea
relationship: part_of UBERON:0003387 ! smooth muscle of trachea

[Term]
id: UBERON:0006683
name: posterior fontanelle
namespace: uberon
xref: EMAPA:19200
xref: FMA:75440
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002221 ! fontanelle

[Term]
id: UBERON:0006684
name: sphenoidal fontanelle
namespace: uberon
xref: EMAPA:19229
xref: FMA:75441
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002221 ! fontanelle

[Term]
id: UBERON:0006686
name: spinal vein
namespace: uberon
synonym: "Spinal vein" EXACT [FMA:76735]
synonym: "vena spinalis" EXACT [FMA:76735, FMA:TA]
xref: EMAPA:18255
xref: FMA:76735
xref: SCTID:181376008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001638 ! vein
is_a: UBERON:0004258 ! back blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0006692
name: vertebral canal
namespace: uberon
def: "The spinal canal (or vertebral canal or spinal cavity) is the space in vertebrae through which the spinal cord passes. It is a process of the dorsal human body cavity. This canal is enclosed within the vertebral foramen of the vertebrae. In the intervertebral spaces, the canal is protected by the ligamentum flavum posteriorly and the posterior longitudinal ligament anteriorly. The outermost layer of the meninges, the dura mater, is closely associated with the arachnoid which in turn is loosely connected to the innermost layer of the meninges, the pia mater. The meninges divide the spinal canal into the epidural space and the subarachnoid space. The pia mater is closely attached to the spinal cord. A subdural space is generally only present due to trauma and/or pathological situations. The subarachnoid space is filled with cerebrospinal fluid and contains the vessels that supply the spinal cord, namely the anterior spinal artery and the paired posterior spinal arteries, accompanied by a corresponding spinal veins. The spinal arteries form anastomoses known as the vasocorona of the spinal cord. The epidural space contains loose fatty tissue, and a network of large, thin-walled blood vessels called the anterior vertebral venous plexus and the posterior vertebral venous plexus The spinal canal was first described by Jean Fernel." [Wikipedia:Spinal_canal]
comment: todo - check neural vs vertebral cabal
synonym: "foramen vertebrale" RELATED [AAO:0000693]
synonym: "neural canal" RELATED [AAO:0000693]
synonym: "spinal canal" RELATED [AAO:0000693]
synonym: "spinal cavity" RELATED [Wikipedia:Spinal_canal]
synonym: "vertebral canal" RELATED [Wikipedia:Spinal_canal]
xref: AAO:0000693
xref: EMAPA:25440
xref: EMAPA:25448
xref: EMAPA:25456
xref: EMAPA:25464
xref: EMAPA:25472
xref: EMAPA:25480
xref: EMAPA:25488
xref: EMAPA:25496
xref: EMAPA:25504
xref: EMAPA:25512
xref: EMAPA:25520
xref: EMAPA:25528
xref: EMAPA:25536
xref: EMAPA:25544
xref: EMAPA:25552
xref: EMAPA:25560
xref: EMAPA:25568
xref: EMAPA:25576
xref: EMAPA:25584
xref: EMAPA:25592
xref: EMAPA:25600
xref: EMAPA:25608
xref: EMAPA:25616
xref: EMAPA:25624
xref: EMAPA:25632
xref: EMAPA:25640
xref: EMAPA:25648
xref: EMAPA:25656
xref: EMAPA:25664
xref: EMAPA:25672
xref: EMAPA:25680
xref: EMAPA:25688
xref: EMAPA:25731
xref: EMAPA:25738
xref: EMAPA:25745
xref: EMAPA:25752
xref: EMAPA:25759
xref: EMAPA:26521
xref: EMAPA:26537
xref: FMA:9680
xref: GAID:242
xref: ncithesaurus:Vertebral_Canal
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001130 ! vertebral column
relationship: surrounds UBERON:0002240 ! spinal cord

[Term]
id: UBERON:0006699
name: foramen caecum of tongue
namespace: uberon
def: "The dorsum of the tongue is convex and marked by a median sulcus, which divides it into symmetrical halves; this sulcus ends behind, about 2.5 cm from the root of the organ, in a depression, the foramen cecum, from which a shallow groove, the sulcus terminalis, runs lateral and anterior on either side to the margin of the tongue. The foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland." [Wikipedia:Foramen_cecum_%28tongue%29]
comment: consider merging with FC of thyroid
synonym: "foramen cecum of tongue" EXACT [FMA:54828]
synonym: "foramen of morgagni" EXACT [FMA:54828]
synonym: "morand's foramen" EXACT [FMA:54828]
xref: FMA:54828
xref: SCTID:368738001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
disjoint_from: UBERON:0006713 ! foramen cecum of frontal bone
relationship: develops_from UBERON:0002539 ! pharyngeal arch

[Term]
id: UBERON:0006713
name: foramen cecum of frontal bone
namespace: uberon
def: "The frontal crest of the frontal bone ends below in a small notch which is converted into a foramen, the foramen cecum, by articulation with the ethmoid. This foramen varies in size in different subjects, and is frequently impervious; when open, it transmits a vein from the nose to the superior sagittal sinus. This has clinical importance in that infections of the nose and nearby areas can be transmitted to the meninges and brain from what is known as the danger triangle of the face." [Wikipedia:Foramen_cecum_%28frontal_bone%29]
comment: todo - check if this is what the FMA ID really denotes
xref: FMA:57443
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 ! cranial conduit

[Term]
id: UBERON:0006714
name: tibiofibula
namespace: uberon
def: "Paired, endochondral bones formed by the fusion of the tibia and fibula. They form the shanks, extending from the knees to the ankles." [AAO:Maglia_et_al_2007]
synonym: "os cruris" RELATED [AAO:0000902]
synonym: "tibia-fibula" EXACT [XAO:0003213]
synonym: "tibiofibula" EXACT []
xref: AAO:0000902
xref: XAO:0003213
property_value: "has_fused_element" UBERON:0000979
property_value: "has_fused_element" UBERON:0001446
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004251 ! lower leg bone
relationship: part_of UBERON:0010720 {source="AAO"} ! hindlimb zeugopod skeleton

[Term]
id: UBERON:0006715
name: radio-ulna
namespace: uberon
def: "Paired, long bones of endochondral origin formed by the fusion of the radius and ulna." [AAO:Maglia_et_al_2007]
synonym: "radioulna" EXACT [XAO:0003209]
synonym: "radius-ulna" EXACT [XAO:0003209]
xref: AAO:0000901
xref: XAO:0003209
property_value: "has_fused_element" UBERON:0001423
property_value: "has_fused_element" UBERON:0001424
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003466 ! lower arm bone
relationship: develops_from UBERON:0010848 ! radius-ulna cartilage condensation
relationship: part_of UBERON:0010703 {source="VAO"} ! forelimb zeugopod skeleton

[Term]
id: UBERON:0006716
name: mesopodium region
namespace: uberon
def: "The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus)" [MA:th, UBERON:cjm, Wikipedia:Carpus_and_tarsus_of_land_vertebrates]
comment: Naming conventions for pod terms under discussion within phenoscape group
synonym: "carpus/tarsus" EXACT []
synonym: "mesopod" RELATED []
synonym: "mesopodial limb segment" EXACT [MA:th]
synonym: "mesopodial segment" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002470 {source="MA:th"} ! autopod region

[Term]
id: UBERON:0006717
name: skeleton of autopod
namespace: uberon
def: "The collection of all skeletal elements in an autopodium region." [UBERON:cjm]
comment: Naming conventions for pod terms under discussion within phenoscape group
synonym: "autopod skeleton" EXACT []
synonym: "autopodium" RELATED [VAO:0005019, VAO:NI]
xref: VAO:0005019
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010712 ! limb skeleton subdivision
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0004381 ! skeleton of limb
relationship: subdivision_of UBERON:0002470 ! autopod region

[Term]
id: UBERON:0006718
name: medial pterygoid muscle
namespace: uberon
def: "The medial pterygoid (or internal pterygoid muscle), is a thick, quadrilateral muscle of mastication. The mandibular branch of the fifth cranial nerve, the trigeminal nerve, innervates the medial pterygoid muscle." [Wikipedia:Medial_pterygoid_muscle]
synonym: "internal pterygoid" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "internal pterygoid muscle" RELATED []
synonym: "medial pteregoid" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoid medialis" EXACT [MA:0002361]
synonym: "pterygoidei internus" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoideus internus" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoideus medial" EXACT [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoideus medialis" EXACT [Wikipedia:Medial_pterygoid_muscle]
xref: FMA:49011
xref: MA:0002361
xref: ncithesaurus:Internal_Pterygoid_Muscle
xref: SCTID:244771003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006720 ! pterygoid muscle

[Term]
id: UBERON:0006719
name: lateral pterygoid muscle
namespace: uberon
def: "The lateral pterygoid (or external pterygoid) is a muscle of mastication with two heads." [Wikipedia:Lateral_pterygoid_muscle]
synonym: "external pterygoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "lateral pteregoid" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "lateral pteregoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "lateral pterygoid" EXACT [FMA:49015]
synonym: "lateral pterygoid" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "musculus pterygoides lateralis" EXACT [FMA:49015]
synonym: "pterygoid lateralis" EXACT [MA:0002360]
synonym: "pterygoideus externus" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "pterygoideus externus muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "pterygoideus lateral" EXACT [Wikipedia:Lateral_pterygoid_muscle]
synonym: "pterygoideus lateral muscle" EXACT [Wikipedia:Lateral_pterygoid_muscle]
xref: EMAPA:25140
xref: FMA:49015
xref: MA:0002360
xref: ncithesaurus:External_Pterygoid_Muscle
xref: SCTID:244772005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006720 ! pterygoid muscle

[Term]
id: UBERON:0006720
name: pterygoid muscle
namespace: uberon
xref: EMAPA:25139
xref: GAID:147
xref: MESH:A.02.633.567.600.700
xref: SCTID:244770002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003681 ! masticatory muscle

[Term]
id: UBERON:0006721
name: alisphenoid bone
namespace: uberon
def: "The greater wing of the sphenoid bone, or alisphenoid, is a bony process of the sphenoid bone; there is one on each side, extending from the side of the body of the sphenoid and curving upward, laterally, and backwards" [Wikipedia:Greater_wing_of_sphenoid_bone]
comment: Taxon notes: The alisphenoid in mammals is part cartilage bone, part membrane bone[PMC1231738] In many mammals, e.g. the dog, the greater wing of the sphenoid bone stays through life a separate bone called the alisphenoid[WP]
synonym: "ala major (os sphenoidale)" EXACT [FMA:52868]
synonym: "alisphenoid bone" EXACT SENSU [MA:0002772]
synonym: "greater wing of sphenoid bone" RELATED [MA:0002772]
synonym: "greater wing of sphenoidal bone" EXACT [FMA:52868]
xref: FMA:52868
xref: MA:0002772
xref: SCTID:361298007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 {source="MA"} ! chondrocranium bone
relationship: develops_from UBERON:0009637 {source="ISBN10:1588903958"} ! alisphenoid ossification center
relationship: develops_from UBERON:0010733 ! alisphenoid cartilage condensation
relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone

[Term]
id: UBERON:0006722
name: manubrium of malleus
namespace: uberon
def: "The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane." [http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus]
synonym: "handle of malleus" RELATED [MA:0002985]
synonym: "malleal manubrium" RELATED [MA:0002985]
synonym: "malleus handle" EXACT [FMA:52760]
synonym: "malleus handle" RELATED [MA:0002985]
synonym: "malleus manubrium" RELATED [MA:0002985]
synonym: "manubrium mallei" RELATED [MA:0002985]
synonym: "manubrium of malleus" EXACT [FMA:52760]
synonym: "manubrium of malleus" RELATED [MA:0002985]
xref: FMA:52760
xref: MA:0002985
xref: SCTID:264091009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001689 ! malleus
relationship: surrounded_by UBERON:0002364 {source="cjm"} ! tympanic membrane

[Term]
id: UBERON:0006723
name: cochlear modiolus
namespace: uberon
def: "a conical shaped central axis in the cochlea. It consists of spongy bone and the cochlea turns approximately 2.5 times around it. The spiral ganglion is situated inside it." [Wikipedia:Modiolus_(cochlea)]
subset: organ_slim
synonym: "cochlea modiolus" EXACT [FMA:61278]
synonym: "modiolus" EXACT [MA:0001182]
synonym: "modiolus of cochlea" EXACT [FMA:61278]
xref: BTO:0001693
xref: FMA:61278
xref: MA:0001182
xref: ncithesaurus:Modiolus
xref: SCTID:361314007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0006585 ! vestibular organ
relationship: part_of UBERON:0001844 ! cochlea

[Term]
id: UBERON:0006724
name: osseus spiral lamina
namespace: uberon
synonym: "lamina modioli cochleae" EXACT [FMA:77710, FMA:TA]
synonym: "lamina of modiolus cochleae" EXACT [FMA:77710]
synonym: "lamina of modiolus of cochlea" EXACT [FMA:77710]
synonym: "osseous spiral lamina of cochlea" EXACT [FMA:77710]
xref: FMA:77710
xref: MA:0001184
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ

[Term]
id: UBERON:0006725
name: spiral ligament
namespace: uberon
comment: Note that this is not classified as a ligament in FMA
synonym: "spiral ligament of cochlear duct" EXACT [FMA:77834]
xref: FMA:77834
xref: MA:0001192
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0008846 ! skeletal ligament
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0006756
name: median lingual swelling
namespace: uberon
def: "During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]." [Wikipedia:Tuberculum_impar]
comment: The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview]
synonym: "median lingual swelling" EXACT [EHDAA2:0001081]
synonym: "median tongue bud" EXACT [http://emedicine.medscape.com/article/845125-overview]
synonym: "tuberculum impar" EXACT []
synonym: "tuberculum linguale mediale" EXACT [Wikipedia:Tuberculum_impar]
xref: EHDAA2:0001081
xref: EMAPA:17187
xref: SCTID:308821003
xref: VHOG:0000730
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004362 ! mandibular arch
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006260 {source="EHDAA2"} ! lingual swellings

[Term]
id: UBERON:0006757
name: lateral lingual swelling
namespace: uberon
def: "During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line." [Wikipedia:Lateral_lingual_swelling]
comment: Structure notes: paired
synonym: "lateral lingual prominence" RELATED []
synonym: "lateral swellings" RELATED [Wikipedia:Lateral_lingual_swelling]
synonym: "tuberculum laterale" RELATED [Wikipedia:Lateral_lingual_swelling]
xref: EHDAA2:0000911
xref: EMAPA:17189
xref: VHOG:0000731
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004362 ! mandibular arch
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006260 ! lingual swellings

[Term]
id: UBERON:0006767
name: head of femur
namespace: uberon
def: "The hemispheric articular surface at the upper extremity of the thigh bone[Stedman, 26th ed]. The femur head is the highest part of the thigh bone. It is supported by the neck of the femur. The head is globular and forms rather more than a hemisphere, is directed upward, medialward, and a little forward, the greater part of its convexity being above and in front. Its surface is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea capitis femoris, which is situated a little below and behind the center of the head, and gives attachment to the ligament of head of femur. If there is a fracture of the neck of the femur, the blood supply through the ligament becomes crucial. In orthopedic surgery, the head of the femur is important because it can undergo avascular necrosis and consequent osteochondritis dissecans. The head is removed in total hip replacement surgery [WP]." [MESH:A.02.835.232.500.247.343, Wikipedia:Femur_head]
synonym: "acetabular head" EXACT [AAO:0000892]
synonym: "capital femoral epiphysis" RELATED [http://medical-dictionary.thefreedictionary.com/capital+femoral+epiphysis]
synonym: "caput femoris" RELATED [AAO:0000892, Wikipedia:Femur_head]
synonym: "femoral head" EXACT [FMA:32851]
synonym: "femur head" RELATED [MESH:A.02.835.232.500.247.343]
xref: AAO:0000892
xref: FMA:32851
xref: galen:FemoralHead
xref: MESH:A.02.835.232.500.247.343
xref: ncithesaurus:Head_of_the_Femur
xref: SCTID:361791000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: adjacent_to UBERON:0001269 ! acetabular part of hip bone
relationship: part_of UBERON:0004412 ! proximal epiphysis of femur

[Term]
id: UBERON:0006768
name: epiphyseal line
namespace: uberon
synonym: "epiphysial junction" EXACT [FMA:9918]
synonym: "line of bony union" EXACT [FMA:9918]
xref: FMA:9918
xref: SCTID:333108008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint
relationship: develops_from UBERON:0002516 ! epiphyseal plate
relationship: part_of UBERON:0001438 ! metaphysis

[Term]
id: UBERON:0006770
name: apophysis
namespace: uberon
xref: FMA:75428
xref: SCTID:65000005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004530 ! bony projection

[Term]
id: UBERON:0006771
name: long bone epiphyseal plate proliferative zone
namespace: uberon
def: "germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix[MP]." [MP:0003662]
comment: In this zone, chondrocytes undergo rapid mitosis, forming distinctive looking stacks[WP]
synonym: "epiphyseal plate proliferative zone" EXACT []
synonym: "zone of proliferation" RELATED [MA:0002976]
xref: MA:0002976
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006775 ! zone of epiphyseal plate

[Term]
id: UBERON:0006772
name: long bone epiphyseal plate hypertrophic zone
namespace: uberon
def: "the layer of the epiphyseal plate of a long bone where chondrocytes mature and enlarge[MP]." [https://sourceforge.net/tracker/?func=detail&aid=3442184&group_id=76834&atid=1205376, MP:0000165]
comment: note that there is also MA:0002849
synonym: "epiphyseal plate hypertrophic zone" EXACT []
synonym: "hypertrophic chondrocyte zone" RELATED [MP:0000165]
synonym: "maturation zone" RELATED [MA:0002977]
synonym: "zone of hypertrophic chondrocytes" RELATED [MA:0002977]
xref: MA:0002977
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006775 ! zone of epiphyseal plate

[Term]
id: UBERON:0006773
name: long bone epiphyseal plate ossification zone
namespace: uberon
def: "layer of the epiphyseal plate where new bone matrix is deposited[MP]." [MP:0006399]
synonym: "epiphyseal plate ossification zone" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006775 ! zone of epiphyseal plate

[Term]
id: UBERON:0006775
name: zone of epiphyseal plate
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0002516 ! epiphyseal plate

[Term]
id: UBERON:0006776
name: annular epiphysis
namespace: uberon
def: "secondary growth centers occurring as rings at the periphery of the superior and inferior surfaces of the vertebral body." [http://medical-dictionary.thefreedictionary.com/epiphysis]
comment: note that here epiphysis means deriving from a separate ossification center
synonym: "anular epiphysis" EXACT [FMA:75792]
xref: FMA:75792
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: adjacent_to UBERON:0001075 ! body of vertebra

[Term]
id: UBERON:0006799
name: glandular epithelium
namespace: uberon
def: "Epithelium composed of secretory cells." [Online_Medical_Dictionary:http://cancerweb.ncl.ac.uk/]
comment: Editor notes: consider splitting epithelium from epithelial tissue
xref: BTO:0002991
xref: ncithesaurus:Glandular_Epithelial_Tissue
xref: ncithesaurus:Glandular_Epithelium
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
relationship: secretes UBERON:0000463 ! portion of organism substance

[Term]
id: UBERON:0006800
name: anatomical line
namespace: uberon
def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH]
subset: upper_level
xref: AAO:0010267
xref: AEO:0000008
xref: BILA:0000008
xref: CARO:0000008
xref: EHDAA2:0003008
xref: FMA:9657
xref: HAO:0000008
xref: TAO:0001837
xref: TGMA:0001828
xref: XAO:0004003
xref: ZFA:0001689
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000015 ! anatomical boundary

[Term]
id: UBERON:0006801
name: head of humerus
namespace: uberon
def: "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb and fits into the socket joint of the olecranon process." [AAO:0000838]
synonym: "eminentia capitata" RELATED [AAO:0000838]
synonym: "humeral head" EXACT [FMA:13304]
synonym: "radial condyle" RELATED [AAO:0000838]
xref: AAO:0000838
xref: FMA:13304
xref: galen:HeadOfHumerus
xref: ncithesaurus:Head_of_the_Humerus
xref: SCTID:181924000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus

[Term]
id: UBERON:0006802
name: acetabular rim
namespace: uberon
def: "Cartilaginous ring that forms the entire acetabular margin." [AAO:0000864]
xref: AAO:0000864
xref: FMA:16941
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001269 ! acetabular part of hip bone

[Term]
id: UBERON:0006803
name: obturator foramen
namespace: uberon
def: "The obturator foramen is the hole created by the ischium and pubis bones of the pelvis through which nerves and muscles pass." [Wikipedia:Obturator_foramen]
synonym: "foramen obturatorium" EXACT [FMA:16999]
xref: AAO:0000863
xref: FMA:16999
xref: ncithesaurus:Obturator_Foramen
xref: SCTID:361777006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0007832 {source="AAO"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0006804
name: reticular tissue
namespace: uberon
def: "Loose connective tissue which consists of an irregular network of cells and reticular fibers and is spatially associated with myeloid and lymphoid cells. Examples: stroma of bone marrow, stroma of spleen, stroma of lymph node.[FMA]" [FMA:20116, FMA:FMA, Wikipedia:Reticular_fiber]
synonym: "reticular connective tissue" EXACT [FMA:20116]
synonym: "textus connectivus reticularis" EXACT [FMA:20116]
xref: AAO:0000542
xref: FMA:20116
xref: SCTID:57987007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001135 ! smooth muscle tissue

[Term]
id: UBERON:0006805
name: sternal end of clavicle
namespace: uberon
def: "Medial end of the clavicle, which usually lies on the ventral side of the epicoracoid cartilage, just posterior to the epicoracoid bridge." [AAO:0000812]
synonym: "extremitas medialis" RELATED [AAO:0000812]
synonym: "extremitas sternalis (Clavicula)" EXACT [FMA:23297]
synonym: "medial end" RELATED [AAO:0000812]
synonym: "medial end of clavicle" EXACT [FMA:23297]
xref: AAO:0000812
xref: FMA:23297
xref: SCTID:181920009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001105 ! clavicle

[Term]
id: UBERON:0006806
name: medial epicondyle of humerus
namespace: uberon
def: "The medial epicondyle of the humerus, larger and more prominent than the lateral epicondyle, is directed a little backward. In birds, where the arm is somewhat rotated compared to other tetrapods, it is called ventral epicondyle of the humerus. It gives attachment to the ulnar collateral ligament of the elbow-joint, to the Pronator teres, and to a common tendon of origin of some of the Flexor muscles of the forearm. The ulnar nerve runs in a groove on the back of this epicondyle[WP]. Rounded projection at the distal head of the humerus and medial to the humeral head, which serves as a place of attachment for the flexor muscles antogonistic to those that attach to the lateral epicondyle[AAO]." [AAO:0000782, Wikipedia:Medial_epicondyle_of_the_humerus]
synonym: "elbow pit" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus]
synonym: "epicondylus medialis (Humerus)" EXACT [FMA:23441]
synonym: "epicondylus medialis humeri" RELATED [AAO:0000782]
synonym: "medial epicondyle" BROAD [AAO:0000782]
synonym: "medial epicondyle of humerus" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus]
synonym: "ulnar condyle of humerus" RELATED [http://www.termiumplus.gc.ca]
synonym: "ventral epicondyle of humerus" RELATED SENSU [Wikipedia:Medial_epicondyle_of_the_humerus]
xref: AAO:0000782
xref: FMA:23441
xref: SCTID:181929005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus

[Term]
id: UBERON:0006807
name: lateral epicondyle of humerus
namespace: uberon
def: "The lateral epicondyle of the humerus is a small, tuberculated eminence, curved a little forward, and giving attachment to the radial collateral ligament of the elbow-joint, and to a tendon common to the origin of the Supinator and some of the Extensor muscles. In birds, where the arm is somewhat rotated compared to other tetrapods, it is termed dorsal epicondyle of the humerus[WP]. Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris[AAO]." [AAO:0000758, Wikipedia:Lateral_epicondyle_of_the_humerus]
synonym: "dorsal epicondyle of the humerus" RELATED SENSU [Wikipedia:Lateral_epicondyle_of_the_humerus]
synonym: "epicondylus lateralis (Humerus)" EXACT [FMA:23442]
synonym: "epicondylus lateralis humeri" RELATED [AAO:0000758]
xref: AAO:0000758
xref: FMA:23442
xref: SCTID:181933003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus

[Term]
id: UBERON:0006810
name: olecranon
namespace: uberon
def: "The olecranon is a large, thick, curved bony eminence of the forearm that projects behind the elbow. It is situated at the upper (proximal) end of the ulna, one of the two bones in the forearm. When the hand faces forward the olecranon faces towards the back (posteriorly). It is bent forward at the summit so as to present a prominent lip which is received into the olecranon fossa of the humerus in extension of the forearm. Its base is contracted where it joins the body and the narrowest part of the upper end of the ulna. Its posterior surface, directed backward, is triangular, smooth, subcutaneous, and covered by a bursa. Its superior surface is of quadrilateral form, marked behind by a rough impression for the insertion of the Triceps brachii; and in front, near the margin, by a slight transverse groove for the attachment of part of the posterior ligament of the elbow-joint. Its anterior surface is smooth, concave, and forms the upper part of the semilunar notch. Its borders present continuations of the groove on the margin of the superior surface; they serve for the attachment of ligaments, viz. , the back part of the ulnar collateral ligament medially, and the posterior ligament laterally. From the medial border a part of the Flexor carpi ulnaris arises; while to the lateral border the anconeus muscle is attached." [Wikipedia:Olecranon]
synonym: "olecranon process" RELATED [Wikipedia:Olecranon]
synonym: "ulnar process" RELATED [AAO:0000843]
xref: AAO:0000843
xref: FMA:39795
xref: ncithesaurus:Olecranon
xref: SCTID:181949001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna

[Term]
id: UBERON:0006811
name: occipital condyle
namespace: uberon
def: "The occipital condyles are undersurface facets of the occipital bone in vertebrates, which function in articulation with the superior facets of the atlas vertebra. The condyles are oval or reniform (kidney-shaped) in shape, and their anterior extremities, directed forward and medialward, are closer together than their posterior, and encroach on the basilar portion of the bone; the posterior extremities extend back to the level of the middle of the foramen magnum. The articular surfaces of the condyles are convex from before backward and from side to side, and look downward and lateralward. To their margins are attached the capsules of the atlantoC6ccipital articulations, and on the medial side of each is a rough impression or tubercle for the alar ligament. At the base of either condyle the bone is tunnelled by a short canal, the hypoglossal canal." [Wikipedia:Occipital_condyle]
comment: birds have a single occipital condyle[WP]
xref: AAO:0000330
xref: FMA:52861
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001693 ! exoccipital bone

[Term]
id: UBERON:0006812
name: mental foramen
namespace: uberon
def: "The mental foramen is one of two holes (\"foramina\") located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals." [Wikipedia:Mental_foramen]
synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen]
synonym: "mental foramina" EXACT PLURAL [OBOL:automatic]
xref: AAO:0000298
xref: FMA:53171
xref: SCTID:244686000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005744 {source="FMA"} ! cranial conduit
relationship: surrounded_by UBERON:0001684 ! mandible

[Term]
id: UBERON:0006813
name: nasal skeleton
namespace: uberon
def: "Structural framework that provides support to the nasal sacs and ducts." [AAO:0000320]
synonym: "skeleton of nose" EXACT [FMA:60116]
xref: AAO:0000320
xref: FMA:60116
xref: SCTID:281486007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0000004 {source="FMA"} ! olfactory apparatus
relationship: subdivision_of UBERON:0000004 ! olfactory apparatus

[Term]
id: UBERON:0006820
name: body of sternum
namespace: uberon
def: "The body of the sternum (gladiolus), considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [Wikipedia:Body_of_sternum]
comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939]
synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum]
synonym: "gladiolus of sternum" EXACT [FMA:7487]
synonym: "mesosternum" EXACT [FMA:7487]
synonym: "sternal body" EXACT [FMA:7487]
xref: AAO:0000939
xref: FMA:7487
xref: SCTID:361743001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000975 ! sternum

[Term]
id: UBERON:0006821
name: cutaneous muscle
namespace: uberon
xref: AAO:0000119
xref: FMA:74996
xref: ncithesaurus:Cutaneous_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0001774 ! muscle of trunk

[Term]
id: UBERON:0006822
name: proximal epiphysis of ulna
namespace: uberon
def: "The head of ulna presents an articular surface, part of which, of an oval or semilunar form, is directed downward, and articulates with the upper surface of the triangular articular disk which separates it from the wrist-joint; the remaining portion, directed lateralward, is narrow, convex, and received into the ulnar notch of the radius." [Wikipedia:Head_of_ulna]
synonym: "caput ulnae" EXACT [FMA:33751, FMA:TA]
synonym: "head of ulna" EXACT [FMA:33751]
synonym: "proximal end of ulna" EXACT [FMA:33751]
synonym: "upper end of ulna" EXACT [FMA:33751]
xref: FMA:33751
xref: galen:HeadOfUlna
xref: SCTID:304590006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004386 ! epiphysis of ulna
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna

[Term]
id: UBERON:0006831
name: pre-tracheal muscle
namespace: uberon
synonym: "pretracheal muscle" EXACT [MA:0001798]
xref: EMAPA:25142
xref: MA:0001798
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0006836
name: medial tibial tarsal bone
namespace: uberon
def: "Endochondral tarsal bone that is medially located and between the intermedium and centralia." [VAO:0005048]
comment: AAO: One of two element that constitute the basal row of tarsals. The tibiale constitutes the postaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the fibulare. todo - check grouping
synonym: "tibiale" RELATED [AAO:0000912, MA:0001350]
xref: AAO:0000912
xref: MA:0001350
xref: VAO:0005048
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001447 ! tarsal bone

[Term]
id: UBERON:0006837
name: tegmen tympani
namespace: uberon
def: "The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] ." [http://education.yahoo.com/reference/gray/subjects/subject/230]
comment: todo - check AAO; grouping is made on basis of related synonym. Crista parotica: seems to be the same as the crista prootica. However, since this lateral ridge of the otic capsule is frequently formed by the opisthotic, rather than the prootic, this may be a better name.; Crista prootica: a ledge or ridge which elaborates the dorsal surface of the prootic or, more generally, the roof of the otic capsule, laterally. The crista may extend posteriorly & laterally, continuous with the paroccipital process, and/or anteriorly or anteroventrally to protect cranial nerve foramina and form part of the fenestra ovalis/vestibuli. In basal tetrapodomorphs and tetrapods, the crista prootica forms the floor of the posttemporal fenestra. See The Prootic. In many tetrapods, the crista prootica is not ossified, or incompletely ossified. However, in frogs, the crista is the main strut joining the skull roofing bones (frontoparietals) with the squamosals. The crista prootica has a similarly expanded role in mammals where it forms an important part of the epitympanic recess and anchors the tympanohyal.[http://www.palaeos.com]
subset: dubious_grouping
synonym: "crista parotica" RELATED HOMOLOGY [AAO:0000116]
synonym: "crista prootica" RELATED HOMOLOGY [AAO:0000116, http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html]
synonym: "paries tegmentalis cavi tympani" EXACT [FMA:56002, FMA:TA]
synonym: "processus muscularis capsulae auditivae" RELATED [AAO:0000116]
synonym: "processus squamosus" RELATED HOMOLOGY [AAO:0000116]
synonym: "tegmental roof of tympanic cavity" EXACT [FMA:56002]
synonym: "tegmental wall of tympanic cavity" EXACT [FMA:56002]
xref: AAO:0000116
xref: FMA:56002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0006844
name: cusp of tooth
namespace: uberon
def: "Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth." [ZFA:0005434]
subset: vertebrate_core
synonym: "tooth cusp" EXACT [FMA:56481]
xref: FMA:56481
xref: ncithesaurus:Tooth_Cusp
xref: SCTID:362107000
xref: TAO:0001973
xref: ZFA:0005434
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0003675 ! tooth crown

[Term]
id: UBERON:0006845
name: abductor muscle
namespace: uberon
def: "A muscle that moves a body part away from the sagittal plane/midline of the body[ZFA]. For example, the abductor muscles of the legs spread the legs away from the midline and away from one another. An abductor muscle opposes an adductor muscle[BTO]." [ZFA:0005269]
comment: note that in FMA the Adbuctor muscle is a subclass of Relation. It's unclear what this actually means, we leave it here as a grouping for now
subset: grouping_class
xref: BTO:0004642
xref: FMA:74997
xref: TAO:0002135
xref: ZFA:0005269
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue

[Term]
id: UBERON:0006846
name: groove
namespace: uberon
def: "Anatomical line that delineates a furrow or depression in an organ or tissue." [ZFA:0001690]
subset: grouping_class
xref: AAO:0010276
xref: AEO:0000161
xref: EHDAA2:0003161
xref: FMA:75037
xref: TAO:0001838
xref: ZFA:0001690
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006800 ! anatomical line

[Term]
id: UBERON:0006849
name: scapula
namespace: uberon
def: "Endochondral bone that is dorsoventrally compressed and provides attachment site for muscles of the pectoral appendage." [VAO:0000157]
comment: Usage notes: this class subsumes the scapula of teleosts and tetrapods - note we create a specific subclasses for pectoral limb scapula and pectoral fin scapula
synonym: "scapula bone" RELATED [BTO:0001218]
synonym: "scapulae" EXACT PLURAL [ZFA:0000583]
xref: MESH:A.02.835.232.087.783
xref: VHOG:0001398
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 {source="TAO"} ! endochondral bone
is_a: UBERON:0007829 ! pectoral girdle bone
relationship: develops_from UBERON:0004753 {source="ZFA"} ! scapulocoracoid
relationship: part_of UBERON:0007831 {source="ZFA-abduced"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0006855
name: ureter muscle layer
namespace: uberon
synonym: "muscular coat of ureter" EXACT [FMA:15893]
synonym: "muscular layer of ureter" EXACT [FMA:15893]
synonym: "muscularis of ureter" EXACT [FMA:15893]
synonym: "tunica muscularis (ureter)" EXACT [FMA:TA]
synonym: "tunica muscularis ureteris" EXACT [FMA:TA]
xref: FMA:15893
xref: MA:0002654
xref: SCTID:3563003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0006660 ! muscle layer
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0009916 {source="FMA"} ! wall of ureter

[Term]
id: UBERON:0006861
name: diaphysis proper
namespace: uberon
def: "Subdivision of long bone which forms the part of the bone between two metaphyses." [UBERON:cjm]
comment: The MA class is placed here because we assume it means diaphysis proper, because in MA epiphysis is not part of MA:0002803
synonym: "body proper of long bone" EXACT [FMA:32688]
synonym: "long bone diaphysis" RELATED INCONSISTENT [MA:0002803]
synonym: "shaft proper of long bone" EXACT [FMA:32688]
xref: FMA:32688
xref: MA:0002803
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004769 ! diaphysis

[Term]
id: UBERON:0006862
name: diaphysis of femur
namespace: uberon
synonym: "body of femur" EXACT [FMA:32847]
synonym: "corpus femoris" EXACT [FMA:32847, FMA:TA]
synonym: "femoral diaphysis" EXACT [FMA:32847]
synonym: "shaft of femur" EXACT [FMA:32847]
xref: FMA:32847
xref: SCTID:182048009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur

[Term]
id: UBERON:0006863
name: proximal metaphysis of femur
namespace: uberon
xref: FMA:32878
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004378 ! proximal metaphysis
is_a: UBERON:0006865 ! metaphysis of femur
intersection_of: UBERON:0004378 ! proximal metaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur

[Term]
id: UBERON:0006864
name: distal metaphysis of femur
namespace: uberon
xref: FMA:32881
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004377 ! distal metaphysis
is_a: UBERON:0006865 ! metaphysis of femur
intersection_of: UBERON:0004377 ! distal metaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur

[Term]
id: UBERON:0006865
name: metaphysis of femur
namespace: uberon
synonym: "femoral metaphysis" EXACT [FMA:32875]
xref: FMA:32875
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001438 ! metaphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur

[Term]
id: UBERON:0006866
name: terminal part of digestive tract
namespace: uberon
xref: FBbt:00005756
xref: WBbt:0005773
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: continuous_with UBERON:0001245 ! anus
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0006868
name: seminal fluid secreting gland
namespace: uberon
subset: grouping_class
subset: organ_slim
xref: FBbt:00004958
xref: WBbt:0006870
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005399 ! male reproductive gland
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0006530 ! seminal fluid
relationship: part_of UBERON:0006947 ! male genital duct
relationship: secretes UBERON:0006530 ! seminal fluid

[Term]
id: UBERON:0006871
name: footplate
namespace: uberon
alt_id: UBERON:0004343
synonym: "foot disk" RELATED []
synonym: "foot plate" EXACT []
xref: EHDAA:5143
xref: EHDAA:6096
xref: EMAPA:17249
xref: ncithesaurus:Foot_Plate
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010130 ! autopod plate
intersection_of: UBERON:0010130 ! autopod plate
intersection_of: develops_into UBERON:0002387 ! foot
relationship: develops_from UBERON:0005418 ! hindlimb bud
relationship: develops_into UBERON:0002387 ! foot

[Term]
id: UBERON:0006875
name: handplate
namespace: uberon
synonym: "hand plate" EXACT []
xref: EHDAA:4194
xref: EHDAA:6242
xref: EMAPA:17245
xref: ncithesaurus:Hand_Plate
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010130 ! autopod plate
intersection_of: UBERON:0010130 ! autopod plate
intersection_of: develops_into UBERON:0002398 ! hand
relationship: develops_from UBERON:0005417 ! forelimb bud
relationship: develops_into UBERON:0002398 ! hand

[Term]
id: UBERON:0006876
name: vasculature of organ
namespace: uberon
synonym: "organ vasculature" EXACT [FMA:74612]
synonym: "set of blood vessels of organ" EXACT [FMA:74612]
xref: FMA:74612
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000062 ! organ
relationship: part_of UBERON:0000062 ! organ

[Term]
id: UBERON:0006904
name: head mesenchyme from mesoderm
namespace: uberon
comment: Editor note: merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements UBERONREF:0000002 NC meeting scheme
subset: vertebrate_core
synonym: "cranial mesoderm" RELATED [UBERON:0005280]
synonym: "head mesenchyme derived from mesoderm" EXACT []
synonym: "head mesenchyme from head mesoderm" EXACT [EHDAA2:0001118]
synonym: "head mesenchyme from mesoderm" EXACT []
synonym: "head mesoderm" RELATED [AAO:0011051, UBERON:0005280]
synonym: "mesenchyme derived from head mesoderm" EXACT [EHDAA:1057]
synonym: "mesenchyme from head mesoderm" EXACT []
xref: AAO:0011051
xref: EFO:0003337
xref: EFO:0003603
xref: EHDAA2:0001118
xref: EHDAA:655
xref: EMAPA:16099
xref: EMAPA:16270
xref: TAO:0000998
xref: VHOG:0000185
xref: XAO:0000053
xref: ZFA:0000998
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005253 {source="ZFA"} ! head mesenchyme
intersection_of: UBERON:0005253 ! head mesenchyme
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm
relationship: develops_from UBERON:0003063 {source="EHDAA2", source="XAO"} ! prechordal plate

[Term]
id: UBERON:0006905
name: mandibular process mesenchyme
namespace: uberon
synonym: "mesenchyme of mandibular process" EXACT [EMAPA:17357]
synonym: "mesenchyme of mandibular prominence" EXACT [UBERON:cjm]
xref: EHDAA2:0001062
xref: EHDAA:5861
xref: EHDAA:5873
xref: EMAPA:17357
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005867 ! mandibular prominence
relationship: part_of UBERON:0005867 ! mandibular prominence

[Term]
id: UBERON:0006907
name: slow muscle tissue
namespace: uberon
def: "The darker-colored muscle tissue of some mammals, composed of slow twitch muscle fibers." [BTO:0002317]
comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992)
synonym: "red muscle" RELATED [BTO:0002317]
synonym: "slow muscle" EXACT [BTO:0002317]
synonym: "slow skeletal muscle tissue" EXACT []
xref: BTO:0002317
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue

[Term]
id: UBERON:0006908
name: fast muscle tissue
namespace: uberon
def: "The paler-colored muscle tissue of some mammals, composed of fast twitch muscle fibers." [BTO:0002318]
comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992)
synonym: "fast muscle" EXACT [BTO:0002318]
synonym: "fast skeletal muscle tissue" EXACT []
synonym: "white muscle" RELATED [BTO:0002318]
xref: BTO:0002318
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue

[Term]
id: UBERON:0006909
name: lumen of gut
namespace: uberon
synonym: "digestive tract lumen" EXACT [UBERON:cjm]
synonym: "gut cavity" EXACT [BTO:0000349]
synonym: "gut lumen" EXACT [FMA:45677]
synonym: "lumen of alimentary tract" EXACT [UBERON:cjm]
synonym: "lumen of digestive tract" EXACT [UBERON:cjm]
xref: BTO:0000349
xref: FMA:45677
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0001555 ! digestive tract
relationship: surrounded_by UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0006912
name: urinary bladder muscularis mucosa
namespace: uberon
synonym: "muscularis mucosa of bladder " BROAD [EMAPA:28619]
synonym: "muscularis mucosa of urinary bladder " EXACT [OBOL:automatic]
xref: EMAPA:28619
xref: MA:0002490
xref: ncithesaurus:Bladder_Muscularis_Mucosa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004228 ! urinary bladder smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001261 ! lamina propria of urinary bladder

[Term]
id: UBERON:0006914
name: squamous epithelium
namespace: uberon
def: "Epithelium composed of flattened platelike cells." [Dorlands_Medical_Dictionary:MerckSource]
xref: BTO:0002072
xref: ncithesaurus:Squamous_Epithelium
xref: SCTID:40118003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium

[Term]
id: UBERON:0006915
name: stratified squamous epithelium
namespace: uberon
def: "Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]" [FMA:45563]
synonym: "epithelium stratificatum squamosum" EXACT [FMA:45563]
xref: FMA:45563
xref: ncithesaurus:Stratified_Squamous_Epithelium
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0006914 ! squamous epithelium

[Term]
id: UBERON:0006924
name: stomach glandular epithelium
namespace: uberon
def: "A glandular epithelium that lines the stomach. The stomach's glandular epithelium is characterized by the presence of gastric glands." [ISBN10:0073040584]
comment: Editor notes: we follow Kardong in treating the glandular epithelium as a distinct entity, and thus as an epithelium which has glands; FMA has 'epithelium of gastric gland', which is part of the gastric gland. Consider also: stomach glandular region as a part-of parent
synonym: "epithelium of gastric gland" NARROW [FMA:63458]
xref: EMAPA:17623
xref: FMA:63458
xref: MA:0002784
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001276 ! epithelium of stomach
is_a: UBERON:0006929 {source="FMA"} ! glandular columnar epithelium
intersection_of: UBERON:0006799 ! glandular epithelium
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0006931 ! stomach glandular region mucosa

[Term]
id: UBERON:0006925
name: digestive gland
namespace: uberon
def: "A gland, such as the liver or pancreas, that secretes into the alimentary canal substances necessary for digestion." [The_American_Heritage_Dictionary_of_the_English_Language:Fourth_Edition._2000.]
subset: organ_slim
synonym: "digestive system gland" EXACT [AAO:0000130]
xref: AAO:0000130
xref: BTO:0000345
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002368 ! endocrine gland
intersection_of: UBERON:0002368 ! endocrine gland
intersection_of: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001007 ! digestive system

[Term]
id: UBERON:0006929
name: glandular columnar epithelium
namespace: uberon
def: "Simple columnar epithelium that constitutes the secretory part of a gland. Examples: epithelium of stomach, luminal epithelium of lactiferous duct.[FMA]" [FMA:64800]
xref: FMA:64800
xref: ncithesaurus:Columnar_Epithelium
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0006799 ! glandular epithelium

[Term]
id: UBERON:0006931
name: stomach glandular region mucosa
namespace: uberon
comment: AO notes: MA also has 'stomach glandular region'
xref: MA:0001614
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001199 ! mucosa of stomach

[Term]
id: UBERON:0006937
name: inner ear epithelium
namespace: uberon
xref: MA:0001189
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0006946
name: efferent duct
namespace: uberon
def: "The efferent ducts (or efferent ductules or ductuli efferentes) connect the rete testis with the initial section of the epididymis. The ductuli are unilaminar and composed of columnar ciliated and non-ciliated (absorptive) cells. The ciliated cells serve to stir the luminal fluids, possibly to help ensure homogeneous absorption of water from the fluid produced by the testis, which results in an increase in the concentration of luminal sperm. The epithelium is surrounded by a band of smooth muscle that helps to propel the sperm toward the epididymis." [Wikipedia:Efferent_ducts]
comment: AO notes: Check EMAPA. Taxon notes: There are two basic designs for efferent ductule structure:    a) multiple entries into the epididymis, as seen in most large mammals. In humans and other large mammals, there are approximately 15-20 efferent ducts, which also occupy nearly one third of the head of the epididymis.    b) single entry, as seen in most small animals such as rodents, whereby the 3-6 ductules merge into a single small ductule prior to entering the epididymis
synonym: "ductuli efferentes testis" RELATED [Wikipedia:Efferent_ducts]
synonym: "efferent ductule" EXACT [FMA:19081]
synonym: "efferent ductule" EXACT [Wikipedia:Efferent_ducts]
synonym: "vasa efferentia" RELATED [AAO:0010532, Wikipedia:Efferent_ducts]
xref: AAO:0010532
xref: EMAPA:18993
xref: FMA:19081
xref: MA:0000398
xref: ncithesaurus:Efferent_Ductule
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channels_from UBERON:0003959 ! rete testis
relationship: channels_into UBERON:0001301 ! epididymis
relationship: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0006947 {source="FMA"} ! male genital duct

[Term]
id: UBERON:0006947
name: male genital duct
namespace: uberon
alt_id: UBERON:0010140
def: "A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [UBERON:cjm]
comment: Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct
subset: grouping_class
synonym: "sperm duct" EXACT [ZFA:0001268]
xref: FMA:55678
xref: TAO:0001268
xref: ZFA:0001268
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channel_for UBERON:0001968 ! semen
relationship: channels_from UBERON:0000473 ! testis
relationship: part_of UBERON:0004054 ! internal male genitalia

[Term]
id: UBERON:0006959
name: mandible angular process
namespace: uberon
def: "a process which protrudes from the ventral caudal angle of the mandible, and acts as the attachment of the digastric muscle." [http://medical-dictionary.thefreedictionary.com/mandibular+angular+process]
synonym: "Mandibular angle" EXACT [FMA:59459]
synonym: "mandibular angle" RELATED [MA:0002873]
xref: MA:0002873
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 ! mandible

[Term]
id: UBERON:0006965
name: vascular cord
namespace: uberon
def: "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077]
xref: EFO:0003709
xref: TAO:0005077
xref: ZFA:0005077
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004535 ! cardiovascular system

[Term]
id: UBERON:0006967
name: horn
namespace: uberon
def: "a pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone." [:Horn_(anatomy)]
xref: GAID:1225
xref: MESH:A.13.507
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006969 ! cranial appendage

[Term]
id: UBERON:0006969
name: cranial appendage
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0006970
name: bony core of horn
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0006967 ! horn

[Term]
id: UBERON:0006984
name: anatomical surface
namespace: uberon
def: "Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures." [CARO:MAH]
subset: upper_level
xref: AAO:0010270
xref: BILA:0000010
xref: CARO:0000010
xref: EHDAA2:0003192
xref: FMA:24137
xref: ID:0000000
xref: ncithesaurus:Anatomic_Surface
xref: ZFA:0005594
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000466 ! immaterial anatomical entity

[Term]
id: UBERON:0007005
name: cardiac mesoderm
namespace: uberon
def: "the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." [http://www.drugs.com/dict/cardiogenic-mesoderm.html, XAO:0000235]
comment: consider FBbt:00005541
synonym: "cardiogenic mesoderm" RELATED [http://www.drugs.com/dict/cardiogenic-mesoderm.html]
synonym: "heart primordia" RELATED [XAO:0000235]
xref: AAO:0011021
xref: BILA:0000051
xref: EHDAA:385
xref: SCTID:360387000
xref: VHOG:0001641
xref: XAO:0000235
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
relationship: induced_by UBERON:0009881 ! anterior lateral plate mesoderm
relationship: part_of UBERON:0004140 ! heart field
relationship: part_of UBERON:0009881 ! anterior lateral plate mesoderm

[Term]
id: UBERON:0007026
name: primitive gut
namespace: uberon
xref: BILA:0000084
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
relationship: develops_into UBERON:0001555 ! digestive tract
relationship: existence_starts_during UBERON:0000109 ! gastrula stage

[Term]
id: UBERON:0007094
name: visceral muculature
namespace: uberon
xref: BILA:0000132
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000383 ! musculature of body

[Term]
id: UBERON:0007095
name: somatic musculature
namespace: uberon
xref: BILA:0000133
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000383 ! musculature of body

[Term]
id: UBERON:0007096
name: cardiac musculature
namespace: uberon
xref: BILA:0000134
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000383 ! musculature of body

[Term]
id: UBERON:0007100
name: circulatory organ
namespace: uberon
def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507]
comment: editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. "The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian". Amniotes:  four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis. Gene notes: Bmp, Nkx, Gata
subset: grouping_class
synonym: "adult heart" RELATED [FBbt:00003154]
synonym: "cardiac pump" EXACT []
synonym: "cardiac structure" RELATED []
synonym: "dorsal tube" NARROW [Wikipedia:Heart]
synonym: "heart" NARROW [GO:0007507]
synonym: "heart or heart like organ" EXACT []
xref: ANISEED:1235302
xref: FBbt:00003154
xref: http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg
xref: TADS:0000147
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003103 ! compound organ
relationship: part_of UBERON:0001009 ! circulatory system

[Term]
id: UBERON:0007115
name: deciduous tooth
namespace: uberon
def: "One of the first set of teeth in the growth development of humans and many other mammals[WP]. The 20 teeth of the first dentition, which are shed and replaced by the permanent teeth, usually by the age of six years. All deciduous teeth are normally expected to erupt by the age of two and a half years[MESH]." [MESH:A.14.254.860.700, Wikipedia:Deciduous_teeth]
comment: GAT in FMA.
synonym: "primary tooth" EXACT [FMA:55655]
synonym: "temporary tooth" EXACT [FMA:55655]
xref: FMA:55655
xref: GAID:1266
xref: MESH:A.14.254.860.700
xref: ncithesaurus:Temporary_Tooth
xref: SCTID:245612004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001091 ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0007116 ! primary dentition
relationship: part_of UBERON:0007116 ! primary dentition

[Term]
id: UBERON:0007116
name: primary dentition
namespace: uberon
def: "The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss." [MESH:A.14.254.245]
synonym: "baby teeth" EXACT [FMA:75151]
synonym: "deciduous dentition" RELATED [GAID:1252]
synonym: "deciduous teeth" EXACT [FMA:75151]
synonym: "dentes decidui" EXACT [FMA:75151, FMA:TA]
synonym: "milk teeth" EXACT [FMA:75151]
synonym: "primary teeth" EXACT [GAID:1266]
synonym: "primary teeth" EXACT [FMA:75151]
synonym: "set of deciduous teeth" EXACT [FMA:75151]
synonym: "set of primary teeth" EXACT [FMA:75151]
synonym: "tooth of primary dentition" EXACT []
xref: FMA:75151
xref: GAID:1252
xref: MESH:A.14.254.245
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003672 ! dentition

[Term]
id: UBERON:0007119
name: neck of femur
namespace: uberon
def: "The femur neck or neck of the femur is a flattened pyramidal process of bone, connecting the femoral head with the femoral shaft, and forming with the latter a wide angle opening medialward." [Wikipedia:Femur_neck]
synonym: "femoral neck" EXACT [FMA:42385]
synonym: "femoral neck" RELATED [Wikipedia:Femur_neck]
synonym: "femur neck" RELATED [Wikipedia:Femur_neck]
synonym: "neck of femur" RELATED [Wikipedia:Femur_neck]
synonym: "neck of the femur" RELATED [Wikipedia:Femur_neck]
xref: FMA:42385
xref: GAID:201
xref: galen:NeckOfFemur
xref: MESH:A.02.835.232.500.247.510
xref: ncithesaurus:Femoral_Neck
xref: SCTID:361792007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0006863 ! proximal metaphysis of femur

[Term]
id: UBERON:0007120
name: premolar tooth
namespace: uberon
def: "The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4." [Wikipedia:Premolar]
synonym: "bicuspid" RELATED [Wikipedia:Premolar]
synonym: "bicuspid teeth" RELATED [Wikipedia:Premolar]
synonym: "bicuspid tooth" RELATED [Wikipedia:Premolar]
synonym: "bicuspids" RELATED [Wikipedia:Premolar]
synonym: "biscuspid" RELATED [Wikipedia:Premolar]
synonym: "dens premolaris" RELATED [Wikipedia:Premolar]
synonym: "dentes premolares" RELATED [Wikipedia:Premolar]
synonym: "first bicuspid" RELATED [Wikipedia:Premolar]
synonym: "first premolar" RELATED [Wikipedia:Premolar]
synonym: "mandibular bicuspid" RELATED [Wikipedia:Premolar]
synonym: "maxillary bicuspid" RELATED [Wikipedia:Premolar]
synonym: "maxillary premolar" RELATED [Wikipedia:Premolar]
synonym: "pm3 %28dentistry%29" RELATED [Wikipedia:Premolar]
synonym: "pr%c3%a6molares" RELATED [Wikipedia:Premolar]
synonym: "praemolares" RELATED [Wikipedia:Premolar]
synonym: "premolar teeth" RELATED [Wikipedia:Premolar]
synonym: "premolar tooth" RELATED [Wikipedia:Premolar]
synonym: "premolars" RELATED [Wikipedia:Premolar]
synonym: "second bicuspid" RELATED [Wikipedia:Premolar]
synonym: "second premolar" RELATED [Wikipedia:Premolar]
synonym: "secondary premolar tooth" EXACT [FMA:55637]
xref: FMA:55637
xref: GAID:1261
xref: MESH:A.14.254.860.150
xref: ncithesaurus:Bicuspid_Tooth
xref: SCTID:304572005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0007122
name: pharyngeal pouch 1
namespace: uberon
alt_id: UBERON:0005718
def: "The endoderm lines the future auditory tube (Pharyngotympanic Eustachian tube) , middle ear, mastoid antrum, and inner layer of the tympanic membrane. & origin of Mandibular nerve & Maxillary artery[WP]. The first pouch lies between the first and second arches[PMID]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#First_pouch]
comment: we use adjacency relations rather than part_of, as in EHDAA2
subset: vertebrate_core
synonym: "1st arch branchial pouch" EXACT [EHDAA2:0000013]
synonym: "1st arch branchial pouch endoderm" EXACT [EHDAA2:0000016]
synonym: "1st arch pouch endoderm" EXACT [EHDAA2:0000016]
synonym: "first arch pharyngeal pouch" EXACT [OBOL:automatic]
synonym: "first visceral pouch" EXACT [XAO:0000102]
synonym: "hyomandibular pouch" EXACT []
synonym: "pharyngeal pouches 1" EXACT PLURAL [ZFA:0001128]
synonym: "visceral pouch 1" EXACT [XAO:0000102]
xref: AAO:0011114
xref: EFO:0003631
xref: EHDAA2:0000016
xref: EMAPA:16124
xref: ncithesaurus:First_Pharyngeal_Pouch
xref: SCTID:345248006
xref: TAO:0001128
xref: VHOG:0000970
xref: XAO:0000102
xref: ZFA:0001128
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004117 ! pharyngeal pouch
intersection_of: UBERON:0004117 ! pharyngeal pouch
intersection_of: overlaps UBERON:0003066 ! hyoid arch
intersection_of: overlaps UBERON:0004362 ! mandibular arch
relationship: overlaps UBERON:0003066 ! hyoid arch
relationship: overlaps UBERON:0004362 ! mandibular arch

[Term]
id: UBERON:0007123
name: pharyngeal pouch 2
namespace: uberon
alt_id: UBERON:0005715
def: "The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
subset: vertebrate_core
synonym: "2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060]
synonym: "2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061]
synonym: "pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130]
synonym: "second arch pharyngeal pouch" EXACT [OBOL:automatic]
synonym: "second visceral pouch" EXACT [XAO:0000247]
synonym: "visceral pouch 2" EXACT [XAO:0000247]
xref: AAO:0011115
xref: EFO:0003633
xref: EHDAA2:0000061
xref: EMAPA:16275
xref: ncithesaurus:Second_Pharyngeal_Pouch
xref: RETIRED_EHDAA2:0000060
xref: SCTID:345349000
xref: TAO:0001130
xref: VHOG:0000967
xref: XAO:0000247
xref: ZFA:0001130
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004117 ! pharyngeal pouch
intersection_of: UBERON:0004117 ! pharyngeal pouch
intersection_of: overlaps UBERON:0003066 ! hyoid arch
intersection_of: overlaps UBERON:0003114 ! pharyngeal arch 3
relationship: overlaps UBERON:0003066 ! hyoid arch
relationship: overlaps UBERON:0003114 ! pharyngeal arch 3

[Term]
id: UBERON:0007135
name: neural keel
namespace: uberon
def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576]
synonym: "presumptive central nervous system" RELATED [ZFA:0000131]
xref: EFO:0003497
xref: TAO:0000131
xref: ZFA:0000131
xref: ZFIN:ZDB-ANAT-010921-559
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003075 ! neural plate

[Term]
id: UBERON:0007145
name: dome of diaphragm
namespace: uberon
synonym: "diaphragm dome" EXACT [FMA:13332]
xref: EMAPA:18046
xref: FMA:13332
xref: SCTID:244940004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001103 ! diaphragm

[Term]
id: UBERON:0007146
name: posterior spinal artery
namespace: uberon
synonym: "dorsal spinal artery" EXACT [FMA:50522]
xref: EMAPA:18243
xref: FMA:50522
xref: ncithesaurus:Posterior_Spinal_Artery
xref: SCTID:181330009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002458 ! spinal artery
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0002458 ! spinal artery

[Term]
id: UBERON:0007164
name: distal radio-ulnar joint
namespace: uberon
synonym: "articulation radioulnaris distalis" EXACT [FMA:35290]
synonym: "distal radioulnar joint" EXACT [FMA:35290]
synonym: "inferior radioulnar joint" EXACT [FMA:35290]
xref: EMAPA:19316
xref: FMA:35290
xref: SCTID:182170009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001528 ! radio-ulnar joint

[Term]
id: UBERON:0007165
name: proximal radio-ulnar joint
namespace: uberon
synonym: "superior radioulnar joint" EXACT [FMA:38860]
xref: EMAPA:19317
xref: FMA:38860
xref: SCTID:361837005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001528 ! radio-ulnar joint

[Term]
id: UBERON:0007166
name: left dome of diaphragm
namespace: uberon
synonym: "left dome of diaphragm viewed radiologically" EXACT [FMA:13334]
xref: EMAPA:25047
xref: FMA:13334
xref: SCTID:244941000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007145 ! dome of diaphragm

[Term]
id: UBERON:0007167
name: right dome of diaphragm
namespace: uberon
synonym: "right dome of diaphragm viewed radiologically" EXACT [FMA:13333]
xref: EMAPA:25048
xref: FMA:13333
xref: SCTID:244942007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007145 ! dome of diaphragm

[Term]
id: UBERON:0007168
name: long head of biceps brachii
namespace: uberon
def: "The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion]
synonym: "caput longum (musculus biceps brachii)" EXACT [FMA:37683]
xref: EMAPA:25054
xref: FMA:37683
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000043 ! tendon
relationship: part_of UBERON:0001507 ! biceps brachii

[Term]
id: UBERON:0007169
name: short head of biceps brachii
namespace: uberon
def: "Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion]
xref: EMAPA:25055
xref: FMA:37682
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000043 ! tendon
relationship: part_of UBERON:0001507 ! biceps brachii

[Term]
id: UBERON:0007170
name: squamous part of occipital bone
namespace: uberon
def: "The squama of the occipital bone, situated above and behind the foramen magnum, is curved from above downward and from side to side." [Wikipedia:Squama_occipitalis]
synonym: "occipital squama" EXACT [FMA:52860]
synonym: "occipital squama" EXACT [Wikipedia:Squama_occipitalis]
synonym: "squama occipitalis" EXACT [Wikipedia:Squama_occipitalis]
synonym: "squama of occipital bone" EXACT [FMA:52860]
xref: EMAPA:25113
xref: FMA:52860
xref: SCTID:139077005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001676 ! occipital bone

[Term]
id: UBERON:0007171
name: border of scapula
namespace: uberon
synonym: "scapular border" EXACT [FMA:23797]
xref: EMAPA:25124
xref: FMA:23797
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006800 ! anatomical line
relationship: part_of UBERON:0001124 ! pectoral limb scapula

[Term]
id: UBERON:0007172
name: angle of scapula
namespace: uberon
synonym: "scapular angle" EXACT [FMA:23800]
xref: EMAPA:25125
xref: FMA:23800
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula

[Term]
id: UBERON:0007173
name: lateral border of scapula
namespace: uberon
synonym: "axillary border of scapula" EXACT [FMA:23239]
synonym: "lateral border of scapula" EXACT [FMA:23239]
synonym: "margo lateralis (scapula)" EXACT [FMA:23239]
synonym: "margo lateralis scapulae" EXACT [FMA:23239, FMA:TA]
xref: EMAPA:25126
xref: FMA:23239
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula

[Term]
id: UBERON:0007174
name: medial part of scapula
namespace: uberon
synonym: "margo medialis (scapula)" EXACT [FMA:23242]
synonym: "margo medialis scapulae" EXACT [FMA:23242, FMA:TA]
synonym: "medial border of scapula" EXACT [FMA:23242]
synonym: "vertebral border of scapula" EXACT [FMA:23242]
xref: EMAPA:25127
xref: FMA:23242
xref: SCTID:368187009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula

[Term]
id: UBERON:0007175
name: inferior angle of scapula
namespace: uberon
synonym: "angulus inferior (scapula)" EXACT [FMA:13315]
xref: EMAPA:25128
xref: FMA:13315
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula

[Term]
id: UBERON:0007176
name: superior angle of scapula
namespace: uberon
synonym: "angulus superior (scapula)" EXACT [FMA:23248]
xref: EMAPA:25129
xref: FMA:23248
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula

[Term]
id: UBERON:0007178
name: muscularis mucosa of mucosa of colon
namespace: uberon
synonym: "lamina muscularis of colonic mucosa" EXACT [FMA:15656]
synonym: "lamina muscularis of colonic mucous membrane" EXACT [FMA:15656]
xref: EMAPA:27399
xref: FMA:15656
xref: SCTID:885000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001239 ! muscularis mucosae of large intestine
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0000317 ! colonic mucosa

[Term]
id: UBERON:0007182
name: muscle layer of infundibulum of uterine tube
namespace: uberon
synonym: "muscle layer of infundibulum of fallopian tube" EXACT [FMA:18336]
synonym: "muscle layer of infundibulum of oviduct" EXACT [FMA:18336]
synonym: "muscularis of infundibulum of uterine tube" EXACT [FMA:18336]
xref: EMAPA:31264
xref: FMA:18336
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006642 ! muscle layer of oviduct
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum
relationship: part_of UBERON:0003983 ! conus arteriosus
relationship: part_of UBERON:0003984 ! uterine tube infundibulum

[Term]
id: UBERON:0007195
name: stroma of bone marrow
namespace: uberon
def: "The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma]
synonym: "bone marrow stroma" EXACT [FMA:21426]
xref: FMA:21426
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002371 ! bone marrow

[Term]
id: UBERON:0007196
name: tracheobronchial tree
namespace: uberon
def: "the structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells." [Wikipedia:Tracheobronchial_tree]
subset: organ_slim
xref: FMA:7393
xref: SCTID:361384001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium
relationship: part_of UBERON:0001558 ! lower respiratory tract

[Term]
id: UBERON:0007213
name: mesenchyme derived from head neural crest
namespace: uberon
subset: vertebrate_core
synonym: "head mesenchyme from cranial neural crest" EXACT []
synonym: "head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
xref: EFO:0003572
xref: EHDAA2:0000735
xref: EMAPA:16169
xref: EMAPA:16271
xref: TAO:0000787
xref: ZFA:0000787
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005253 {source="ZFA"} ! head mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0003099 ! cranial neural crest
relationship: develops_from UBERON:0003099 ! cranial neural crest

[Term]
id: UBERON:0007215
name: trabecula cranii
namespace: uberon
def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [ZFIN:curator]
comment: A paired cartilaginous element appearing in the preotic section of the head at the border between the brain and visceral structures (The Trabecula cranii: development and homology of an enigmatic vertebrate head structure - Cerny et al 2006)
synonym: "trabeculae cranii" EXACT PLURAL [ZFA:0001507]
xref: TAO:0001507
xref: ZFA:0001507
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003932 ! chondrocranium cartilage
relationship: part_of UBERON:0005945 ! neurocranial trabecula

[Term]
id: UBERON:0007223
name: osseus cochlea
namespace: uberon
def: "The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve." [http://www.innerbody.com/image_nerv14/nerv175.html]
comment: todo - check this. in MA, cochlea is not part of the bony labyrinth
xref: MA:0000239
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001839 ! bony labyrinth
relationship: part_of UBERON:0001844 ! cochlea

[Term]
id: UBERON:0007237
name: 1st arch mandibular component
namespace: uberon
xref: EHDAA2:0000031
xref: EHDAA:583
xref: EMAPA:16382
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004362 ! mandibular arch

[Term]
id: UBERON:0007238
name: 1st arch maxillary component
namespace: uberon
xref: EHDAA2:0000038
xref: EHDAA:595
xref: EMAPA:16388
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004362 ! mandibular arch

[Term]
id: UBERON:0007239
name: tunica media of artery
namespace: uberon
synonym: "arterial media" EXACT [EV:0100029]
synonym: "tunica media (arteriae)" EXACT [FMA:14273]
xref: EV:0100029
xref: FMA:14273
xref: SCTID:84300001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002111 ! artery smooth muscle tissue
is_a: UBERON:0002522 ! tunica media
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0000415 ! artery wall
relationship: part_of UBERON:0001637 ! artery

[Term]
id: UBERON:0007243
name: tunica media of vein
namespace: uberon
synonym: "tunica media (venae)" EXACT [FMA:14354]
synonym: "venous media" EXACT [EV:0100033]
xref: EV:0100033
xref: FMA:14354
xref: SCTID:42049001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002522 ! tunica media
is_a: UBERON:0004696 ! venous system smooth muscle
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0001638 ! vein
relationship: part_of UBERON:0001638 ! vein

[Term]
id: UBERON:0007252
name: intervertebral disk of cervical vertebra
namespace: uberon
synonym: "cervical intervertebral disc" EXACT [FMA:13895]
synonym: "intervertebral disc of cervical region" EXACT [EMAPA:19415]
xref: EMAPA:19415
xref: FMA:13895
xref: SCTID:68818006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001066 ! intervertebral disk
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column
relationship: part_of UBERON:0006072 ! cervical region of vertebral column

[Term]
id: UBERON:0007254
name: intervertebral disk of thoracic vertebra
namespace: uberon
synonym: "intervertebral disc of thoracic region" EXACT [EMAPA:19489]
xref: EMAPA:19489
xref: FMA:10455
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001066 ! intervertebral disk
is_a: UBERON:0005181 ! thoracic segment organ
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column
relationship: part_of UBERON:0006073 ! thoracic region of vertebral column

[Term]
id: UBERON:0007255
name: intervertebral disk of lumbar vertebra
namespace: uberon
synonym: "intervertebral disc of lumbar region" EXACT [EMAPA:19468]
xref: EMAPA:19468
xref: FMA:13894
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001066 ! intervertebral disk
is_a: UBERON:0005173 ! abdominal segment organ
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column
relationship: part_of UBERON:0006074 ! lumbar region of vertebral column

[Term]
id: UBERON:0007257
name: intervertebral disk of sacral vertebra
namespace: uberon
synonym: "intervertebral disc of sacral region" EXACT [EMAPA:19575]
xref: EMAPA:19575
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001066 ! intervertebral disk
is_a: UBERON:0005179 ! pelvis organ
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column
relationship: part_of UBERON:0006075 ! sacral region of vertebral column

[Term]
id: UBERON:0007260
name: intervertebral disk of third cervical vertebra
namespace: uberon
synonym: "C3 intervertebral disk" EXACT [FMA:13896]
synonym: "intervertebral disk, C3-C4" EXACT [FMA:13896]
xref: EMAPA:19422
xref: FMA:13896
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra

[Term]
id: UBERON:0007261
name: intervertebral disk of fourth cervical vertebra
namespace: uberon
synonym: "intervertebral disc of fourth cervical vertebra" EXACT [FMA:13897]
synonym: "intervertebral disk, C4-C5" EXACT [FMA:13897]
xref: EMAPA:19425
xref: FMA:13897
xref: SCTID:361748005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra

[Term]
id: UBERON:0007262
name: intervertebral disk of fifth cervical vertebra
namespace: uberon
synonym: "intervertebral disc of fifth cervical vertebra" EXACT [FMA:13898]
synonym: "intervertebral disk, C5-C6" EXACT [FMA:13898]
xref: EMAPA:19428
xref: FMA:13898
xref: SCTID:361749002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra

[Term]
id: UBERON:0007263
name: intervertebral disk of sixth cervical vertebra
namespace: uberon
synonym: "intervertebral disk, C6-C7" EXACT [FMA:13899]
xref: EMAPA:19460
xref: FMA:13899
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra

[Term]
id: UBERON:0007264
name: intervertebral disk of seventh cervical vertebra
namespace: uberon
synonym: "intervertebral disk, C7-T1" EXACT [FMA:13900]
xref: EMAPA:19463
xref: FMA:13900
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra

[Term]
id: UBERON:0007265
name: intervertebral disk of axis
namespace: uberon
synonym: "C2 disk" EXACT [FMA:25058]
synonym: "C2 intervertebral disk" EXACT [FMA:25058]
synonym: "intervertebral disc of second cervical vertebra" EXACT [FMA:25058]
synonym: "intervertebral disk of second cervical vertebra" EXACT [FMA:25058]
synonym: "intervertebral disk, C2-C3" EXACT [FMA:25058]
synonym: "second cervical intervertebral disk" EXACT [FMA:25058]
xref: EMAPA:19419
xref: FMA:25058
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra

[Term]
id: UBERON:0007266
name: intervertebral disk of atlas
namespace: uberon
synonym: "C1 disk" EXACT []
synonym: "C1 intervertebral disk" EXACT []
synonym: "first cervical intervertebral disk" EXACT []
synonym: "intervertebral disc of first cervical vertebra" EXACT []
synonym: "intervertebral disk of first cervical vertebra" EXACT []
synonym: "intervertebral disk, C1-C2" EXACT []
xref: EMAPA:19416
xref: FMA:25058
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra

[Term]
id: UBERON:0007267
name: trachea pre-cartilage rings
namespace: uberon
synonym: "cartilaginous ring of trachea " EXACT [EMAPA:18699]
xref: EHDAA2:0002070
xref: EHDAA:7082
xref: EMAPA:18699
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0009505 ! associated mesenchyme of trachea
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea

[Term]
id: UBERON:0007268
name: upper esophageal sphincter
namespace: uberon
def: "The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx." [Wikipedia:Upper_esophageal_sphincter]
synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter]
xref: ncithesaurus:Upper_Esophageal_Sphincter
xref: Wikipedia:Upper_esophageal_sphincter
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0007652 ! esophageal sphincter
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0007269
name: pectoral appendage musculature
namespace: uberon
synonym: "pectoral fin musculature" NARROW SENSU [ZFA:0000563]
xref: EFO:0003540
xref: TAO:0000563
xref: ZFA:0000563
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007271 ! limb/fin musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 ! pectoral appendage

[Term]
id: UBERON:0007270
name: pelvic appendage musculature
namespace: uberon
synonym: "pelvic fin musculature" NARROW SENSU [ZFA:0000258]
xref: TAO:0000258
xref: ZFA:0000258
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007271 ! limb/fin musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0004709 ! pelvic appendage

[Term]
id: UBERON:0007271
name: limb/fin musculature
namespace: uberon
synonym: "fin musculature" NARROW SENSU [ZFA:0000207]
xref: TAO:0000207
xref: ZFA:0000207
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 ! musculature
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0004708 ! limb/fin

[Term]
id: UBERON:0007272
name: pectoral appendage skeleton
namespace: uberon
def: "Skeletal subdivision consisting of the anterior appendicular limb skeleton, excluding the pectoral girdle." [VAO:0005000, VAO:NI]
synonym: "cheiropterygium" RELATED [VAO:0005000, VAO:NI]
xref: VAO:0005000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 {source="VAO"} ! pectoral appendage
relationship: subdivision_of UBERON:0004710 ! pectoral appendage

[Term]
id: UBERON:0007273
name: pelvic appendage skeleton
namespace: uberon
def: "The collection of all skeletal elements in a pelvic appendage region." [UBERON:cjm]
xref: VAO:0005063
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0004709 {source="VAO"} ! pelvic appendage
relationship: subdivision_of UBERON:0004709 ! pelvic appendage

[Term]
id: UBERON:0007277
name: presumptive hindbrain
namespace: uberon
xref: EFO:0003440
xref: TAO:0000569
xref: ZFA:0000569
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0002028 ! hindbrain
relationship: develops_into UBERON:0002028 ! hindbrain

[Term]
id: UBERON:0007278
name: presumptive sinus venosus
namespace: uberon
xref: TAO:0002234
xref: ZFA:0001722
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0002063 ! sinus venosus
relationship: develops_into UBERON:0002063 ! sinus venosus

[Term]
id: UBERON:0007280
name: presumptive endocardium
namespace: uberon
xref: TAO:0002233
xref: ZFA:0001724
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0002165 ! endocardium
relationship: develops_into UBERON:0002165 ! endocardium

[Term]
id: UBERON:0007282
name: presumptive segmental plate
namespace: uberon
xref: EFO:0003421
xref: TAO:0000053
xref: ZFA:0000053
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003059 ! presomitic mesoderm
relationship: develops_from UBERON:0009618 {consistent_with="UBERONREF:0000002", source="EDHAA2"} ! trunk paraxial mesoderm
relationship: develops_into UBERON:0003059 ! presomitic mesoderm

[Term]
id: UBERON:0007284
name: presumptive neural plate
namespace: uberon
xref: EFO:0003424
xref: TAO:0000063
xref: ZFA:0000063
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003075 ! neural plate
relationship: develops_into UBERON:0003075 ! neural plate

[Term]
id: UBERON:0007285
name: presumptive paraxial mesoderm
namespace: uberon
xref: EFO:0003443
xref: TAO:0000591
xref: XAO:0004134
xref: ZFA:0000591
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003077 ! paraxial mesoderm
relationship: develops_into UBERON:0003077 ! paraxial mesoderm

[Term]
id: UBERON:0007297
name: presumptive pronephric mesoderm
namespace: uberon
synonym: "nephron primordium" EXACT [ZFA:0001070]
xref: EFO:0003619
xref: TAO:0001070
xref: ZFA:0001070
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006598 ! presumptive structure
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005721 ! pronephric mesoderm
relationship: develops_into UBERON:0005721 ! pronephric mesoderm

[Term]
id: UBERON:0007303
name: pharyngeal vasculature
namespace: uberon
synonym: "branchial vasculature" EXACT [ZFA:0005003]
xref: TAO:0005003
xref: ZFA:0005003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0007329
name: pancreatic duct
namespace: uberon
def: "A duct that is part of the pancreas and connected to the duodenum." [UBERON:cjm, Wikipedia:Pancreatic_duct]
comment: note that this class groups together accessory (dorsal) and main (ventral) pancreatic ducts. AO notes: in EHDAA2, the dorsal and ventral ducts are classified as epithelial sacs - review after overhaul of duct/epithelia terms
subset: vertebrate_core
synonym: "duct of pancreas" EXACT [OBOL:automatic]
synonym: "pancreas duct" EXACT [OBOL:automatic]
xref: EHDAA:9194
xref: FMA:10419
xref: MA:0000124
xref: SCTID:181278006
xref: TAO:0001372
xref: ZFA:0001372
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003928 {source="ZFA"} ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: continuous_with UBERON:0002114 ! duodenum
relationship: develops_from UBERON:0003922 ! pancreatic bud
relationship: part_of UBERON:0001264 ! pancreas

[Term]
id: UBERON:0007352
name: stria vascularis vasculature
namespace: uberon
def: "blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002200 ! vasculature of head
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004522 ! vasculature of musculoskeletal system
is_a: UBERON:0006876 ! vasculature of organ
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002282 ! stria vascularis of cochlear duct
relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct

[Term]
id: UBERON:0007354
name: cartilage of pharyngotympanic tube
namespace: uberon
def: "The cartilage of pharyngotympanic tube, about 24 mm. in length, is formed of a triangular plate of elastic fibrocartilage, the apex of which is attached to the margin of the medial end of the osseous portion of the tube, while its base lies directly under the mucous membrane of the nasal part of the pharynx, where it forms an elevation, the torus tubarius or cushion, behind the pharyngeal orifice of the tube. The upper edge of the cartilage is curled upon itself, being bent laterally so as to present on transverse section the appearance of a hook; a groove or furrow is thus produced, which is open below and laterally, and this part of the canal is completed by fibrous membrane. The cartilage lies in a groove between the petrous part of the temporal and the great wing of the sphenoid; this groove ends opposite the middle of the medial pterygoid plate. The cartilaginous and bony portions of the tube are not in the same plane, the former inclining downward a little more than the latter. The diameter of the tube is not uniform throughout, being greatest at the pharyngeal orifice, least at the junction of the bony and cartilaginous portions, and again increased toward the tympanic cavity; the narrowest part of the tube is termed the isthmus. The position and relations of the pharyngeal orifice are described with the nasal part of the pharynx. The mucous membrane of the tube is continuous in front with that of the nasal part of the pharynx, and behind with that of the tympanic cavity; it is covered with ciliated epithelium and is thin in the osseous portion, while in the cartilaginous portion it contains many mucous glands and near the pharyngeal orifice a considerable amount of adenoid tissue, which has been named by Gerlach the tube tonsil. The tube is opened during deglutition by the Salpingopharyngeus and Dilatator tubC&. The latter arises from the hook of the cartilage and from the membranous part of the tube, and blends below with the Tensor veli palatini." [Wikipedia:Cartilage_of_pharyngotympanic_tube]
synonym: "cartilage of auditory tube" EXACT [FMA:60096]
synonym: "cartilage of eustachian tube" EXACT [FMA:60096]
synonym: "cartilago tubae auditivae" EXACT [FMA:60096, FMA:TA]
synonym: "cartilago tubae auditoriae" EXACT [FMA:60096, FMA:TA]
synonym: "pharyngotympanic tube cartilage" EXACT [FMA:60096]
xref: FMA:60096
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003566 ! head connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube
relationship: part_of UBERON:0002393 ! pharyngotympanic tube

[Term]
id: UBERON:0007355
name: bony part of pharyngotympanic tube
namespace: uberon
def: "The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion." [Wikipedia:Bony_part_of_pharyngotympanic_tube]
synonym: "bony part of auditory tube" EXACT [FMA:60057]
synonym: "bony part of eustachian tube" EXACT [FMA:60057]
synonym: "osseous portion" RELATED [Wikipedia:Bony_part_of_pharyngotympanic_tube]
synonym: "osseous portion of eustachian tube" EXACT [FMA:60057]
synonym: "pars ossea (tuba auditiva)" EXACT [FMA:60057]
synonym: "pars ossea (tuba auditoria)" EXACT [FMA:60057]
xref: FMA:60057
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002481 ! bone tissue
is_a: UBERON:0003566 ! head connective tissue
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube
relationship: part_of UBERON:0002393 ! pharyngotympanic tube

[Term]
id: UBERON:0007374
name: incus cartilage condensation
namespace: uberon
xref: EMAPA:18228
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0006248 ! incus pre-cartilage condensation

[Term]
id: UBERON:0007375
name: primary or secondary palate
namespace: uberon
def: "Either the primary or secondary palate" [UBERON:cjm]
subset: grouping_class
synonym: "palate" EXACT []
synonym: "palatum" EXACT INCONSISTENT []
xref: AAO:0010535
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0007376
name: outer epithelial layer
namespace: uberon
def: "The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. The epidermis of a more complex invertebrate is just one-layer deep, and may be protected by a non-cellular cuticle. The epidermis of a higher vertebrate has many layers, and the outer layers are reinforced with keratin and then die[WP]." [Wikipedia:Epidermis_(zoology)]
comment: Editor's note: this grouping class exists primarily to align with GO - see GO:0008544.
subset: grouping_class
synonym: "epidermis" NARROW [GO:0008544]
synonym: "hypodermis" RELATED INCONSISTENT [GO:0008544, WBbt:0005733]
synonym: "outer epidermal layer" EXACT []
xref: FBbt:00004993
xref: HAO:0000298
xref: TADS:0000109
xref: WBbt:0005733
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0003102 ! surface structure
intersection_of: UBERON:0000483 ! epithelium
intersection_of: surrounds UBERON:0000468 ! multi-cellular organism
relationship: surrounds UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0007383
name: enveloping layer of ectoderm
namespace: uberon
def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originallu this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm." [ISBN:9780878932504, ZFIN:ZDB-PUB-961014-576]
synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576]
synonym: "EVL" EXACT [ZFA:0000086]
xref: EFO:0003425
xref: TAO:0000086
xref: ZFA:0000086
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0007389
name: limb/fin fin cartilage
namespace: uberon
xref: TAO:0001543
xref: ZFA:0001543
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0004708 ! limb/fin

[Term]
id: UBERON:0007390
name: pectoral appendage cartilage
namespace: uberon
xref: TAO:0000257
xref: ZFA:0000257
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007389 ! limb/fin fin cartilage
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0007272 ! pectoral appendage skeleton

[Term]
id: UBERON:0007391
name: pelvic appendage cartilage
namespace: uberon
xref: TAO:0001459
xref: ZFA:0001459
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007389 ! limb/fin fin cartilage
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0007273 ! pelvic appendage skeleton

[Term]
id: UBERON:0007497
name: developing epithelial placode
namespace: uberon
alt_id: EHDAA2:0003112
def: "A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
synonym: "epithelial placode" EXACT [AEO:0000112]
xref: AEO:0000112
xref: AEO:0000218
xref: EHDAA2:0003112
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000485 {source="AEO"} ! simple columnar epithelium
is_a: UBERON:0001048 ! primordium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_into UBERON:0000061 ! anatomical structure
relationship: develops_into UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0007499
name: epithelial sac
namespace: uberon
def: "An epithelial tube that is open at one end only." [AEO:JB, UBERONREF:0000001]
xref: AEO:0000115
xref: EHDAA2:0003115
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003914 {source="AEO"} ! epithelial tube
is_a: UBERON:0009856 ! sac

[Term]
id: UBERON:0007500
name: epithelial tube open at both ends
namespace: uberon
def: "An epithelial tube open at both ends that allows fluid flow." [AEO:JB, UBERONREF:0000001]
xref: AEO:0000116
xref: RETIRED_EHDAA2:0003116
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003914 {source="AEO"} ! epithelial tube

[Term]
id: UBERON:0007503
name: epithelial vesicle
namespace: uberon
alt_id: EHDAA2:0003119
def: "A closed epithelium with a lumen." [AEO:JB]
xref: AEO:0000119
xref: EHDAA2:0003119
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 {source="AEO"} ! epithelium

[Term]
id: UBERON:0007521
name: smooth muscle sphincter
namespace: uberon
def: "A ring of smooth muscle cells whose contraction closes the opening of the ring." [AEO:JB]
xref: AEO:0000143
xref: EHDAA2:0003143
xref: SCTID:362915001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 {source="AEO"} ! smooth muscle tissue
is_a: UBERON:0004590 ! sphincter muscle

[Term]
id: UBERON:0007522
name: striated muscle sphincter
namespace: uberon
def: "A ring of striated muscle cells whose contraction closes the opening of the ring." [AEO:JB]
xref: AEO:0000144
xref: EHDAA2:0003144
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002036 {source="AEO"} ! striated muscle tissue
is_a: UBERON:0004590 ! sphincter muscle

[Term]
id: UBERON:0007524
name: dense mesenchyme tissue
namespace: uberon
alt_id: EHDAA2:0003146
def: "Mesenchyme with little extracellular matrix." [AEO:JB]
xref: AEO:0000146
xref: EHDAA2:0003146
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 {source="AEO"} ! mesenchyme

[Term]
id: UBERON:0007530
name: migrating mesenchyme population
namespace: uberon
alt_id: EHDAA2:0003152
def: "Mesenchymal cells that are migrating." [AEO:JB]
comment: Editors note: this class will be an important part of the NC reorganization
xref: AEO:0000152
xref: EHDAA2:0003152
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme

[Term]
id: UBERON:0007592
name: ciliated columnar epithelium
namespace: uberon
def: "Simple columnar epithelium in which the luminal side of the cells bears cilia. Examples: epithelium of trachea, epithelium of uterine tube.[FMA]" [FMA:64798]
xref: FMA:64798
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000485 {source="FMA"} ! simple columnar epithelium
is_a: UBERON:0007601 ! ciliated epithelium

[Term]
id: UBERON:0007601
name: ciliated epithelium
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium

[Term]
id: UBERON:0007612
name: extensor digitorum communis
namespace: uberon
def: "A muscle on the back of the forearm that extends the fingers and wrist." [BTO:0001343, Wikipedia:Extensor_digitorum_muscle]
synonym: "extensor digitorum" EXACT [FMA:38500]
xref: BTO:0001343
xref: FMA:38500
xref: MA:0002293
xref: ncithesaurus:Extensor_Digitorum_Communis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 {source="BTO"} ! extensor muscle
is_a: UBERON:0004254 ! forelimb zeugopod muscle
relationship: part_of UBERON:0002386 {source="BTO"} ! forelimb zeugopod

[Term]
id: UBERON:0007613
name: extensor digitorum lateralis
namespace: uberon
comment: Origin distal to extensor digitorum communis. The part of this muscle that gives a tendon to the 5th digit is comparable to the extensor digiti quinti proprius of the human [ISBN10:9780716717553]
xref: MA:0002294
xref: ncithesaurus:Extensor_Digitorum_Lateralis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 {source="BTO"} ! extensor muscle
is_a: UBERON:0004254 ! forelimb zeugopod muscle
relationship: part_of UBERON:0002386 ! forelimb zeugopod

[Term]
id: UBERON:0007614
name: extensor digiti minimi
namespace: uberon
def: "The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the hand, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]." [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle]
comment: The tendon of insertion is sometimes divided and gives a slip to the fourth digit. An ulnar slip has been observed to end on the base of the fifth metacarpal, thus exactly reproducing the arrangement of the serially homologous slip known as peroneus tertius in the leg. The muscle may be absent in rare cases, but fusion with extensor digitorum is frequent, in which case the tendon comes from the common extensor.
synonym: "extensor digiti minimi" RELATED [Wikipedia:Extensor_digiti_minimi_muscle]
synonym: "extensor digiti minimi %28hand%29" RELATED [Wikipedia:Extensor_digiti_minimi_muscle]
synonym: "extensor digiti quinti proprius" RELATED [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle]
xref: FMA:38503
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0004254 ! forelimb zeugopod muscle
relationship: part_of UBERON:0002386 ! forelimb zeugopod

[Term]
id: UBERON:0007616
name: synovial tissue
namespace: uberon
def: "A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]." [BTO:0001338, http://www.britannica.com/EBchecked/topic/578563/synovial-tissue]
xref: BTO:0001338
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 {source="BTO"} ! connective tissue
relationship: secretes UBERON:0001090 ! synovial fluid

[Term]
id: UBERON:0007617
name: synovial cavity of joint
namespace: uberon
synonym: "articular cavity (synovial joint)" EXACT [FMA:11356]
synonym: "cavitas articularis (junctura synovialis)" EXACT [FMA:11356]
synonym: "cavity of synovial joint" EXACT [FMA:11356]
xref: FMA:11356
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0002217 ! synovial joint
relationship: surrounded_by UBERON:0002217 ! synovial joint

[Term]
id: UBERON:0007618
name: synovial cavity of hip joint
namespace: uberon
xref: EMAPA:19021
xref: FMA:9701
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007617 ! synovial cavity of joint
intersection_of: UBERON:0007617 ! synovial cavity of joint
intersection_of: part_of UBERON:0001486 ! hip joint
relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint

[Term]
id: UBERON:0007645
name: future meninx
namespace: uberon
comment: Development notes: previously had a develops_from link to mesoderm but this had no source. The zebrafish primitive meninx develops from neural crest[UBERONREF:0000002]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0002360 ! meninx
relationship: has_developmental_contribution_from UBERON:0000926 ! mesoderm
relationship: has_developmental_contribution_from UBERON:0002342 {source="ISBN10:0073040584"} ! neural crest
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0007647
name: ectomeninx
namespace: uberon
def: "the layer of mesoderm from which the dura mater and much of the membrane bone of the skull develop in the higher vertebrate embryo." [http://www.merriam-webster.com/medical/ectomeninx]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007645 ! future meninx
relationship: develops_from UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0007652
name: esophageal sphincter
namespace: uberon
comment: editor note - check for specific subtypes across species. Note mammals have upper and lower, but lower is really part of cardia and thus is not classified under here
synonym: "oesophagial sphincter" EXACT [ZFA:0000415]
xref: SCTID:277765007
xref: TAO:0000415
xref: ZFA:0000415
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003832 ! esophagus muscle
is_a: UBERON:0004590 ! sphincter muscle
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus

[Term]
id: UBERON:0007657
name: anular ligament of radius
namespace: uberon
def: "The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna" [Wikipedia:Anular_ligament_of_radius]
synonym: "annular ligament of radius" EXACT [FMA:38872]
synonym: "anular ligament" BROAD [EMAPA:19322]
synonym: "ligamentum anulare radii" EXACT [FMA:38872, FMA:TA]
synonym: "orbicular ligament of radius" EXACT [FMA:38872]
xref: EMAPA:19322
xref: FMA:38872
xref: SCTID:182394000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003574 ! elbow connective tissue
is_a: UBERON:0003575 ! wrist connective tissue
is_a: UBERON:0008846 ! skeletal ligament
relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint
relationship: part_of UBERON:0007165 {source="FMA"} ! proximal radio-ulnar joint

[Term]
id: UBERON:0007687
name: kidney field
namespace: uberon
def: "region of the embryo into the area in which the kidney rudiment will develop." [GO:0072004, GOC:mtg_kidney_jan10]
synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0007690
name: early pharyngeal endoderm
namespace: uberon
def: "." [http://dev.biologists.org/content/128/22/4573.full]
comment: relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'
synonym: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457]
synonym: "pharyngeal arch endoderm" RELATED []
synonym: "pharyngeal endoderm" RELATED [ZFA:0001104]
synonym: "pharyngeal region endoderm" RELATED [EHDAA2:0001456]
xref: EFO:0003626
xref: EHDAA2:0001457
xref: EHDAA:962
xref: TAO:0001104
xref: ZFA:0001104
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000925 {source="ZFA"} ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 {source="EHDAA2"} ! endoderm
relationship: part_of UBERON:0008814 ! pharyngeal system
relationship: part_of UBERON:0009722 {source="cjm"} ! entire pharyngeal arch endoderm

[Term]
id: UBERON:0007719
name: os penis/os clitoris
namespace: uberon
synonym: "baculum" NARROW []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0005156 ! reproductive structure

[Term]
id: UBERON:0007721
name: interphalangeal joint of toe
namespace: uberon
def: "The interphalangeal articulations of the foot (articulations of the phalanges) are ginglymoid joints, and each has a plantar and two collateral ligaments. The arrangement of these ligaments is similar to that in the metatarsophalangeal articulations: the Extensor tendons supply the places of dorsal ligaments." [Wikipedia:Interphalangeal_articulations_of_the_foot]
synonym: "foot interphalangeal joint" EXACT [MESH:A.02.835.583.378.900]
synonym: "interphalangeal joint of foot" EXACT [FMA:35225]
synonym: "toe joint" RELATED [MESH:A.02.835.583.378.900]
xref: FMA:35225
xref: MESH:A.02.835.583.378.900
xref: ncithesaurus:Interphalangeal_Joint_of_the_Foot
xref: SCTID:182225005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001487 ! joint of foot
is_a: UBERON:0006658 {source="FMA"} ! inter-phalangeal joint
intersection_of: UBERON:0006658 ! inter-phalangeal joint
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0007722
name: interphalangeal joint of finger
namespace: uberon
def: "The interphalangeal articulations of hand are hinge-joints of the phalanges of the hand. There are two sets (except in the thumb): \"proximal interphalangeal joints\" (PIP), those between the first (also called proximal) and second (intermediate) phalanges \"distal interphalangeal joints\" (DIP), those between the second and third (distal) phalanges A similar group of articulations also function in the toes." [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "interphalangeal joint of hand" EXACT [FMA:35285]
synonym: "IP joint" EXACT [FMA:35285]
xref: FMA:35285
xref: ncithesaurus:Interphalangeal_Joint_of_the_Hand
xref: SCTID:303280009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001489 ! joint of hand
is_a: UBERON:0006658 {source="FMA"} ! inter-phalangeal joint
intersection_of: UBERON:0006658 ! inter-phalangeal joint
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0007723
name: interphalangeal joint of thumb
namespace: uberon
synonym: "interphalangeal joint of first digit of hand" EXACT [FMA:35312]
xref: EMAPA:25058
xref: FMA:35312
xref: SCTID:182192008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 {source="FMA"} ! hand digit 1

[Term]
id: UBERON:0007724
name: interphalangeal joint of big toe
namespace: uberon
synonym: "interphalangeal joint of first digit of foot" EXACT [FMA:35353]
synonym: "interphalangeal joint of great toe" EXACT [FMA:35353]
xref: EMAPA:26430
xref: FMA:35353
xref: SCTID:363671008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 {source="FMA"} ! foot digit 1

[Term]
id: UBERON:0007725
name: interphalangeal joint of second toe
namespace: uberon
synonym: "interphalangeal joint of second digit of foot" EXACT [FMA:35356]
xref: EMAPA:26448
xref: FMA:35356
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 {source="FMA"} ! foot digit 2

[Term]
id: UBERON:0007726
name: interphalangeal joint of third toe
namespace: uberon
synonym: "interphalangeal joint of third digit of foot" EXACT [FMA:35359]
xref: EMAPA:26454
xref: FMA:35359
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 {source="FMA"} ! foot digit 3

[Term]
id: UBERON:0007727
name: interphalangeal joint of fourth toe
namespace: uberon
synonym: "interphalangeal joint of fourth digit of foot" EXACT [FMA:35362]
xref: EMAPA:26466
xref: FMA:35362
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 {source="EMAPA"} ! foot digit 4

[Term]
id: UBERON:0007728
name: interphalangeal joint of little toe
namespace: uberon
synonym: "interphalangeal joint of fifth digit of foot" EXACT [FMA:35365]
synonym: "interphalangeal joint of fifth toe" EXACT [FMA:35365]
xref: EMAPA:26478
xref: FMA:35365
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 {source="FMA"} ! foot digit 5

[Term]
id: UBERON:0007729
name: interphalangeal joint of index finger
namespace: uberon
synonym: "interphalangeal joint of second digit of hand" EXACT [FMA:35397]
synonym: "interphalangeal joint of second finger" EXACT [FMA:35397]
xref: EMAPA:25061
xref: FMA:35397
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 {source="EMAPA"} ! hand digit 2

[Term]
id: UBERON:0007730
name: interphalangeal joint of middle finger
namespace: uberon
synonym: "interphalangeal joint of third digit of hand" EXACT [FMA:35400]
synonym: "interphalangeal joint of third finger" EXACT [FMA:35400]
xref: EMAPA:25064
xref: FMA:35400
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 {source="EMAPA"} ! hand digit 3

[Term]
id: UBERON:0007731
name: interphalangeal joint of ring finger
namespace: uberon
synonym: "interphalangeal joint of fourth digit of hand" EXACT [FMA:35403]
synonym: "interphalangeal joint of fourth finger" EXACT [FMA:35403]
xref: EMAPA:25067
xref: FMA:35403
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 {source="EMAPA"} ! hand digit 4

[Term]
id: UBERON:0007732
name: interphalangeal joint of little finger
namespace: uberon
synonym: "interphalangeal joint of fifth digit of hand" EXACT [FMA:35407]
synonym: "interphalangeal joint of fifth finger" EXACT [FMA:35407]
xref: EMAPA:25070
xref: FMA:35407
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 {source="EMAPA"} ! hand digit 5

[Term]
id: UBERON:0007735
name: metacarpophalangeal joint of thumb
namespace: uberon
synonym: "metacarpophalangeal joint of first digit of hand" EXACT [FMA:35249]
xref: EMAPA:25057
xref: FMA:35249
xref: SCTID:361844001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1

[Term]
id: UBERON:0007738
name: metacarpophalangeal joint of index finger
namespace: uberon
synonym: "metacarpophalangeal joint of second digit of hand" EXACT [FMA:35252]
synonym: "metacarpophalangeal joint of second finger" EXACT [FMA:35252]
xref: EMAPA:25060
xref: FMA:35252
xref: SCTID:361845000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2

[Term]
id: UBERON:0007741
name: metacarpophalangeal joint of middle finger
namespace: uberon
synonym: "metacarpophalangeal joint of third digit of hand" EXACT [FMA:35255]
synonym: "metacarpophalangeal joint of third finger" EXACT [FMA:35255]
xref: EMAPA:25063
xref: FMA:35255
xref: SCTID:361846004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3

[Term]
id: UBERON:0007744
name: metacarpophalangeal joint of ring finger
namespace: uberon
synonym: "metacarpophalangeal joint of fourth digit of hand" EXACT [FMA:35258]
synonym: "metacarpophalangeal joint of fourth finger" EXACT [FMA:35258]
xref: EMAPA:25066
xref: FMA:35258
xref: SCTID:361847008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4

[Term]
id: UBERON:0007747
name: metacarpophalangeal joint of little finger
namespace: uberon
synonym: "metacarpophalangeal joint of fifth digit of hand" EXACT [FMA:35261]
synonym: "metacarpophalangeal joint of fifth finger" EXACT [FMA:35261]
xref: EMAPA:25069
xref: FMA:35261
xref: SCTID:361848003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: UBERON:0003695 ! metacarpophalangeal joint
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5

[Term]
id: UBERON:0007750
name: metatarsophalangeal joint of big toe
namespace: uberon
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of first digit of foot" EXACT [FMA:35228]
synonym: "metatarsophalangeal joint of great toe" EXACT [FMA:35228]
xref: EMAPA:26436
xref: FMA:35228
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1

[Term]
id: UBERON:0007753
name: metatarsophalangeal joint of second toe
namespace: uberon
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of second digit of foot" EXACT [FMA:35231]
xref: EMAPA:26442
xref: FMA:35231
xref: SCTID:361869001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2

[Term]
id: UBERON:0007756
name: metatarsophalangeal joint of third toe
namespace: uberon
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of third digit of foot" EXACT [FMA:35234]
xref: EMAPA:26460
xref: FMA:35234
xref: SCTID:361870000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3

[Term]
id: UBERON:0007759
name: metatarsophalangeal joint of fourth toe
namespace: uberon
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of fourth digit of foot" EXACT [FMA:35237]
xref: EMAPA:26472
xref: FMA:35237
xref: SCTID:361871001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: UBERON:0003696 ! metatarsophalangeal joint
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4

[Term]
id: UBERON:0007762
name: metatarsophalangeal joint of little toe
namespace: uberon
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of fifth digit of foot" EXACT [FMA:35240]
synonym: "metatarsophalangeal joint of fifth toe" EXACT [FMA:35240]
xref: EMAPA:26484
xref: FMA:35240
xref: SCTID:361872008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003696 {source="FMA"} ! metatarsophalangeal joint
relationship: part_of UBERON:0003635 {source="FMA"} ! foot digit 5

[Term]
id: UBERON:0007774
name: secondary dentition
namespace: uberon
def: "The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.237]
synonym: "adult dentition" RELATED [GAID:1251]
synonym: "dentes permanentes" EXACT [FMA:75152, FMA:TA]
synonym: "permanent dentition" EXACT [GAID:1251]
synonym: "permanent teeth" EXACT [FMA:75152]
synonym: "secondary dentition" RELATED [GAID:1251]
synonym: "set of permanent teeth" EXACT [FMA:75152]
synonym: "set of secondary teeth" EXACT [FMA:75152]
xref: FMA:75152
xref: GAID:1251
xref: MESH:A.14.254.237
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003672 {source="FMA"} ! dentition
intersection_of: UBERON:0003672 ! dentition
intersection_of: developmentally_replaces UBERON:0007116 ! primary dentition
relationship: developmentally_replaces UBERON:0007116 ! primary dentition

[Term]
id: UBERON:0007775
name: secondary tooth
namespace: uberon
def: "Permanent teeth are the second set of teeth formed in humans[WP]." [Wikipedia:Permanent_teeth]
comment: GAT in FMA
synonym: "permanent tooth" EXACT [FMA:55654]
xref: FMA:55654
xref: ncithesaurus:Permanent_Tooth
xref: SCTID:245563006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001091 ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0007774 ! secondary dentition
relationship: part_of UBERON:0007774 ! secondary dentition

[Term]
id: UBERON:0007776
name: unerupted tooth
namespace: uberon
def: "A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group." [MESH:A.14.254.860.715]
synonym: "unerupted teeth" RELATED [GAID:1268]
xref: GAID:1268
xref: MESH:A.14.254.860.715
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0007798
name: vascular system
namespace: uberon
comment: in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system
xref: BTO:0001085
xref: EHDAA2:0004520
xref: MA:0002718
xref: ncithesaurus:Vascular_System
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0004535 {source="MA"} ! cardiovascular system

[Term]
id: UBERON:0007799
name: mixed dentition
namespace: uberon
def: "The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.229]
synonym: "transitional dentition" EXACT [GAID:1250]
xref: GAID:1250
xref: MESH:A.14.254.229
xref: SCTID:245545006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003672 {source="GAID"} ! dentition

[Term]
id: UBERON:0007800
name: proatlas
namespace: uberon
def: "a small, paired bony element (more rarely, having fused parts) located between the skull and the atlas in tuataras, crocodiles, chameleons, and many fossil reptiles; it is uncommon in turtles and mammals (hedgehog). The proatlas apparently develops from the ossified neural part of the sclerotome. Externally it resembles the neural arch of the vertebra, since it articulates anteriorly with the lateral occipital bone and posteriorly with the anterior articular process of the atlas." [http://encyclopedia2.thefreedictionary.com/Proatlas]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002413 ! cervical vertebra
relationship: anterior_to UBERON:0001092 ! first cervical vertebra

[Term]
id: UBERON:0007801
name: pygostyle
namespace: uberon
def: "Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]." [Wikipedia:Pygostyle]
subset: organ_slim
xref: SCTID:416894001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0007804
name: sclerotic ring
namespace: uberon
def: "Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]." [Wikipedia:Sclerotic_ring]
synonym: "scleral ring" EXACT [Wikipedia:Sclerotic_ring]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010290 {source="PMID:17051547"} ! scleral ossicle
relationship: part_of UBERON:0001697 ! orbit

[Term]
id: UBERON:0007805
name: synsacrum
namespace: uberon
def: "The synsacrum is a skeletal structure, mainly described in birds and dinosaurs, in which the sacrum is extended by incorporation of additional fused or partially-fused caudal or lumbar vertebrae. The ilium of the pelvis is attached to the synsacrum and, in some species, may also be fused to it. Together with the pelvis this forms a rigid structure which carries the weight of the hind end of the animal. In living and some prehistoric birds, posterior to the synsacrum there are usually only a few free caudal vertebrae, on the end of which lies the pygostyle[WP]. Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end[AAO]." [AAO:Pugener_2002, Wikipedia:Synsacrum]
xref: AAO:0000740
xref: SCTID:67943001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0005179 ! pelvis organ
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0006075 {source="AAO"} ! sacral region of vertebral column

[Term]
id: UBERON:0007811
name: craniocervical region
namespace: uberon
def: "The anteriormost subdivision of the body that includes the head and the neck (if present). In vertebrates this is the subdivision that includes the cervical vertebrae." [UBERON:cjm]
synonym: "head and neck" EXACT [FMA:280881]
synonym: "head or neck" RELATED []
xref: EV:0100009
xref: FMA:280881
xref: galen:HeadAndNeck
xref: MA:0000006
xref: ncithesaurus:Head_and_Neck
xref: SCTID:361355005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 {source="MA"} ! organism subdivision
relationship: has_part UBERON:0000033 ! head
relationship: part_of UBERON:0000153 ! anterior region of body

[Term]
id: UBERON:0007812
name: post-anal tail
namespace: uberon
def: "a tail that extends from the posterior tip of the organism to the anus, contains muscle and skeleton." [UBERON:cjm]
comment: Taxon notes: present at some time in chordate life history (eg in Urochordates, present only in free-swimming larvae). Function: propellor locomotion (in some species)
subset: vertebrate_core
synonym: "muscular postanal tail" EXACT []
synonym: "postanal tail" EXACT []
xref: AAO:0010338
xref: EHDAA2:0003109
xref: MA:0000008
xref: ncithesaurus:Tail
xref: TAO:0001117
xref: XAO:0003026
xref: ZFA:0001117
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002415 ! tail
relationship: develops_from UBERON:0002533 ! tail bud

[Term]
id: UBERON:0007818
name: major alar cartilage
namespace: uberon
def: "The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose." [Wikipedia:Greater_alar_cartilage]
synonym: "cartilago alaris major" EXACT [FMA:59504]
synonym: "greater alar cartilage" EXACT [FMA:59504]
xref: FMA:59504
xref: SCTID:361928006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage

[Term]
id: UBERON:0007819
name: minor alar cartilage
namespace: uberon
def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [Wikipedia:Lesser_alar_cartilages]
synonym: "lesser alar cartilage" EXACT [FMA:59507]
xref: FMA:59507
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage

[Term]
id: UBERON:0007820
name: accessory nasal cartilage
namespace: uberon
xref: FMA:59510
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage

[Term]
id: UBERON:0007821
name: lateral nasal cartilage
namespace: uberon
def: "The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]." [Wikipedia:Lateral_nasal_cartilage]
xref: FMA:59511
xref: SCTID:278944009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage

[Term]
id: UBERON:0007822
name: vomeronasal cartilage
namespace: uberon
def: "The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson. Ludwig Levin Jacobson (1783-1843), a Danish anatomist, named this structure in 1809." [Wikipedia:Vomeronasal_cartilage]
synonym: "Huschke's cartilage" EXACT [FMA:59514]
synonym: "Jacobson's cartilage" EXACT [FMA:59514]
xref: FMA:59514
xref: SCTID:368123006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage

[Term]
id: UBERON:0007823
name: appendage girdle region
namespace: uberon
alt_id: UBERON:0007824
comment: Note that this encompasses non-skeletal tissue
synonym: "fin girdle" RELATED SENSU []
synonym: "fin girdle region" RELATED SENSU []
synonym: "girdle" BROAD []
synonym: "girdle region" BROAD []
synonym: "limb girdle" RELATED SENSU []
synonym: "limb girdle region" RELATED SENSU []
xref: FMA:24874
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "spatially_disjoint_from" UBERON:0004708
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0010707 ! appendage girdle complex

[Term]
id: UBERON:0007825
name: reticular membrane of spiral organ
namespace: uberon
synonym: "reticular lamina" BROAD [MA:0001194]
synonym: "reticular lamina of spiral organ" EXACT [Obol:automatic]
synonym: "reticular lamina of spiral organ of cochlea" EXACT [Obol:automatic]
xref: FMA:77849
xref: MA:0001194
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001967 {source="Obol"} ! reticular lamina
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002227 {source="MA"} ! spiral organ of cochlea

[Term]
id: UBERON:0007828
name: girdle bone/zone
namespace: uberon
synonym: "girdle bone" EXACT [MA:0000291]
xref: MA:0000291
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010740 ! bone of appendage girdle complex
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0010719 ! girdle skeleton

[Term]
id: UBERON:0007829
name: pectoral girdle bone
namespace: uberon
subset: vertebrate_core
xref: MA:0000292
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle

[Term]
id: UBERON:0007830
name: pelvic girdle bone/zone
namespace: uberon
comment: typically the ilium, ischium and pubis. These can alternately be considered individual bones, or zones of a single fused bone. Editor note: check sacrum, coccyx (MA does NOT include these)
subset: vertebrate_core
synonym: "pelvic girdle bone" EXACT [MA:0000293]
xref: MA:0000293
xref: SCTID:426214007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007832 ! skeleton of pelvic girdle
relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle

[Term]
id: UBERON:0007831
name: skeleton of pectoral girdle
namespace: uberon
comment: AO notes: Note that the VAO and many ontologies use the label 'pectoral girdle' to denote the skeletal region specifically.
subset: vertebrate_core
synonym: "pectoral girdle" RELATED INCONSISTENT [VAO:0000156]
synonym: "pectoral girdle skeleton" EXACT [FMA:24141]
xref: AAO:0000422
xref: EFO:0000946
xref: EHDAA2:0001420
xref: EMAPA:18025
xref: FMA:24141
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Pectoral_girdle_front_diagram.svg/200px-Pectoral_girdle_front_diagram.svg.png
xref: MAT:0000181
xref: MIAA:0000181
xref: ncithesaurus:Shoulder_Girdle
xref: TAO:0000407
xref: VAO:0000156
xref: VHOG:0001156
xref: XAO:0003063
xref: ZFA:0000407
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010719 ! girdle skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
intersection_of: subdivision_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0002091 {source="XAO"} ! entire appendicular skeleton
relationship: subdivision_of UBERON:0001421 ! pectoral girdle region

[Term]
id: UBERON:0007832
name: skeleton of pelvic girdle
namespace: uberon
def: "Skeletal subdivision consisting of a set of bones linking the axial series to the hindlimb zeugopodium and offering anchoring areas for hindlimb and caudal musculature." [VAO:0000155, Wikipedia:Pelvic_girdle]
comment: AO notes: Note that the VAO and many ontologies use the label 'pelvic girdle' to denote the skeletal region specifically. We place the EHDAA2 class here, note that this includes the pre-cartilage condensation as parts. Editor notes: need to resolve whether this is a paired structure or a single belt (Paired in FMA - implicitly paired in VAO)
subset: vertebrate_core
synonym: "pelvic girdle" RELATED INCONSISTENT [VAO:0000155]
synonym: "pelvic girdle skeleton" EXACT [VAO:0000155]
xref: AAO:0000426
xref: AAO:0000768
xref: EFO:0000947
xref: EHDAA2:0001426
xref: EHDAA:7149
xref: EHDAA:8324
xref: EMAPA:18028
xref: FMA:87592
xref: galen:PelvicGirdle
xref: http://people.eku.edu/ritchisong/pectoralgirdles.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png
xref: MAT:0000182
xref: MIAA:0000182
xref: TAO:0000565
xref: VAO:0000155
xref: VHOG:0000305
xref: XAO:0003064
xref: ZFA:0000565
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010719 ! girdle skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
intersection_of: subdivision_of UBERON:0001271 ! pelvic girdle region
relationship: develops_from UBERON:0010377 {source="PMID:21455939"} ! mesenchyme from somatopleure
relationship: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0002091 {source="XAO"} ! entire appendicular skeleton
relationship: subdivision_of UBERON:0001271 ! pelvic girdle region

[Term]
id: UBERON:0007833
name: osseus semicircular canal
namespace: uberon
comment: consider adding FMA:60186
synonym: "osseous semicircular canal" EXACT [Obol:automatic]
xref: MA:0000250
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 {notes="checkme"} ! zone of bone organ
is_a: UBERON:0006585 ! vestibular organ
relationship: part_of UBERON:0001839 {source="MA"} ! bony labyrinth
relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal

[Term]
id: UBERON:0007841
name: furcula
namespace: uberon
def: "a forked bone found in birds, formed by the fusion of the two clavicles. In birds, its function is the strengthening of the thoracic skeleton to withstand the rigors of flight." [Wikipedia:Furcula]
comment: The following theropods have been found to have furculae: dromaeosaurids (including a new North American species of Velociraptor), Oviraptorids, Tyrannosaurids, Troodontids, Coelophysids and Allosauroids. Editor notes: currently assigned to be part of the pectoral girdle, but this may be incorrect if PG is a paired structure
synonym: "fused clavicle" RELATED []
synonym: "wishbone" RELATED [Wikipedia:Furcula]
property_value: "has_fused_element" UBERON:0008255
property_value: "has_fused_element" UBERON:0008256
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0007829 ! pectoral girdle bone
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle

[Term]
id: UBERON:0007842
name: membrane bone
namespace: uberon
xref: EHDAA2:0003085
xref: TAO:0001645
xref: VAO:0000023
xref: XAO:0004014
xref: ZFA:0001636
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 {source="VAO"} ! skeletal element

[Term]
id: UBERON:0007843
name: uncinate process of ribs
namespace: uberon
def: "Extensions of bone that in birds project caudally from the vertical segment of each rib[WP]. Posteriorly directed process (occasionally directed anteriorly) usually associated with the rib (sometimes with the transverse process) of the third vertebra; they provide the origin of the mm serratus superior, medius, and inferior[AAO]. " [AAO:Pugener_2002, Wikipedia:Uncinate_processes_of_ribs]
comment: WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx
synonym: "uncinate process" BROAD INCONSISTENT [AAO:0000741]
xref: AAO:0000741
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010913 ! vertebral element
disjoint_from: UBERON:0010372 ! uncinate process of ethmoid
disjoint_from: UBERON:0010373 ! uncinate process of pancreas
relationship: part_of UBERON:0002228 {source="AAO"} ! rib

[Term]
id: UBERON:0007844
name: cartilaginous element
namespace: uberon
def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VAO:curator]
comment: todo - add subtypes
subset: organ_slim
synonym: "cartilage" RELATED [VAO:0000000]
synonym: "cartilage organ" EXACT [FMA:55107]
synonym: "chondrogenic element" EXACT [VAO:0000000]
xref: FMA:55107
xref: VAO:0000000
xref: XAO:0004013
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 {source="VAO"} ! skeletal element
relationship: develops_from UBERON:0005863 {source="VAO"} ! cartilaginous condensation
relationship: has_part UBERON:0002418 {source="VAO"} ! cartilage tissue

[Term]
id: UBERON:0007845
name: regular connective tissue
namespace: uberon
def: "Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular collagenous tissue." [FMA:20103]
xref: FMA:20103
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002384 {source="FMA"} ! connective tissue

[Term]
id: UBERON:0007846
name: dense regular collagenous tissue
namespace: uberon
def: "Regular connective tissue, the intercellular matrix of which consists predominantly of collagen fiber bundles arranged in parallel arrays[FMA]. Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts)[VAP]" [FMA:64781, VAO:0000050]
synonym: "dense fibrous connective tissue" EXACT [FMA:64781]
synonym: "dense regular collagenous connective tissue" EXACT [FMA:64781]
synonym: "dense regular connective tissue" EXACT [FMA:64781, VAO:0000050]
synonym: "typus regularis (textus connectivus collagenosus compactus)" EXACT [FMA:64781]
xref: FMA:64781
xref: ncithesaurus:Regular_Dense_Connective_Tissue
xref: SCTID:22560007
xref: VAO:0000050
xref: XAO:0004030
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007845 {source="FMA"} ! regular connective tissue

[Term]
id: UBERON:0007914
name: head or neck bone
namespace: uberon
xref: MA:0000569
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 {source="MA"} ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0007811 {source="MA"} ! craniocervical region

[Term]
id: UBERON:0007958
name: central carpal bone
namespace: uberon
def: "A small bone occasionally found at the dorsal aspect of the wrist between the scaphoid, capitate, and trapezoid; it is developed as an independent cartilage in early foetal life but usually becomes fused with the scaphoid; it occurs normally in most monkeys." [http://www.medilexicon.com/medicaldictionary.php?t=63518]
comment: axioms for VAO:0005042
synonym: "central bone" BROAD [http://www.medilexicon.com/medicaldictionary.php?t=63518]
synonym: "central carpals" EXACT [VAO:0005042]
synonym: "centrale" RELATED [MA:0001344]
synonym: "os carpi centrale" RELATED [http://epub.ub.uni-muenchen.de/8251/1/8251.pdf]
synonym: "os centrale" EXACT [VAO:0005042]
synonym: "os centrale" RELATED []
synonym: "os centrale carpi" RELATED []
xref: FMA:77232
xref: MA:0001344
xref: SCTID:26987000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001435 {source="MA"} ! carpal bone

[Term]
id: UBERON:0007959
name: falciform carpal bone
namespace: uberon
comment: todo - check relationship to radial sesamoid
synonym: "os falciform" EXACT [UBERON:cjm]
synonym: "os falciforme" EXACT [UBERON:cjm]
xref: MA:0001345
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001435 {source="MA"} ! carpal bone

[Term]
id: UBERON:0007960
name: scapholunate
namespace: uberon
def: "The combined scaphoid and lunate bones." [UBERON:cjm]
comment: Taxon notes: present in mouse[based on MA], carnivora[Websters] and macropods[WP]
synonym: "intermedioradial carpal bone" RELATED [MA:0001346]
synonym: "scapholunate bone" EXACT [UBERON:cjm]
synonym: "scapholunatum" RELATED [UBERON:cjm]
xref: MA:0001346
property_value: "has_fused_element" UBERON:0001427
property_value: "has_fused_element" UBERON:0001428
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001480 {source="MA"} ! proximal carpal bone

[Term]
id: UBERON:0007990
name: proximal sesamoid bone of foot
namespace: uberon
xref: MA:0001376
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 {source="MA"} ! sesamoid bone
is_a: UBERON:0004248 {source="MA"} ! foot digit bone
is_a: UBERON:0008000 ! sesamoid bone of foot

[Term]
id: UBERON:0007991
name: proximal sesamoid bone of hand
namespace: uberon
xref: MA:0001377
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 {source="MA"} ! sesamoid bone
is_a: UBERON:0004249 {source="MA"} ! hand digit bone
is_a: UBERON:0007997 ! sesamoid bone of hand

[Term]
id: UBERON:0007993
name: ulnar sesamoid bone
namespace: uberon
xref: MA:0001379
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 {source="MA"} ! sesamoid bone
is_a: UBERON:0003466 {source="MA"} ! lower arm bone

[Term]
id: UBERON:0007997
name: sesamoid bone of hand
namespace: uberon
xref: FMA:42353
xref: SCTID:368448000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone
is_a: UBERON:0005897 ! hand bone
intersection_of: UBERON:0001479 ! sesamoid bone
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0008000
name: sesamoid bone of foot
namespace: uberon
xref: FMA:45096
xref: SCTID:244675002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone
is_a: UBERON:0005899 ! foot bone
intersection_of: UBERON:0001479 ! sesamoid bone
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001445 {source="FMA"} ! skeleton of foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0008001
name: irregular bone
namespace: uberon
def: "The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone]
synonym: "os irregulare" EXACT []
xref: FMA:7477
xref: ncithesaurus:Irregular_Bone
xref: SCTID:421560006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 {source="FMA"} ! bone

[Term]
id: UBERON:0008114
name: joint of girdle
namespace: uberon
synonym: "girdle join" EXACT [OBOL:automatic]
xref: MA:0001505
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 {source="MA"} ! skeletal joint
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0007823 ! appendage girdle region

[Term]
id: UBERON:0008115
name: surface of cartilage
namespace: uberon
synonym: "cartilage surface" EXACT [FMA:76668]
xref: FMA:76668
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006984 ! anatomical surface

[Term]
id: UBERON:0008124
name: joint articular surface
namespace: uberon
comment: note that FMA has multiple "Articular surface of X" classes, with no way to group them
xref: MA:0001518
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008115 ! surface of cartilage
relationship: part_of UBERON:0002217 {source="MA"} ! synovial joint

[Term]
id: UBERON:0008187
name: hypertrophic cartilage zone
namespace: uberon
comment: see also VAO:0000098
xref: MA:0002849
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0004763 {source="MA"} ! endochondral bone tissue

[Term]
id: UBERON:0008188
name: tendon of biceps brachii
namespace: uberon
synonym: "biceps brachii tendon" EXACT [FMA:38152]
xref: EMAPA:25053
xref: FMA:38152
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000043 {source="FMA"} ! tendon
intersection_of: UBERON:0000043 ! tendon
intersection_of: attached_to UBERON:0001507 ! biceps brachii
relationship: attached_to UBERON:0001507 ! biceps brachii

[Term]
id: UBERON:0008192
name: tendon of triceps brachii
namespace: uberon
synonym: "triceps brachii tendon" EXACT [FMA:38380]
xref: FMA:38380
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000043 {source="FMA"} ! tendon
intersection_of: UBERON:0000043 ! tendon
intersection_of: attached_to UBERON:0001509 ! triceps brachii
relationship: attached_to UBERON:0001509 ! triceps brachii

[Term]
id: UBERON:0008193
name: pneumatized bone
namespace: uberon
def: "a bone that is hollow or contains many air cells, such as the mastoid process of the temporal bone[TMD]. Skeletal pneumaticity is the presence of air spaces within bones. Skeletal pneumaticity exists only in synapsids and archosaurs. It is generally produced during development by excavation of bone by pneumatic diverticula (air sacs) from an air-filled space such as the lungs or nasal cavity. Pneumatization is highly variable between individuals, and bones not normally pneumatized can become pneumatized in pathological development. Pneumatization occurs in the skulls of mammals, crocodilians and birds among extant groups, as well as extinct archosaurs including the dinosaurs and pterosaurs. Pneumatic spaces include the paranasal sinuses and some of the mastoid cells[WP]." [http://www.medilexicon.com/medicaldictionary.php?t=11303, Wikipedia:Skeletal_pneumaticity]
comment: editor note: subclasses of this should be checked for taxonomic consistency
synonym: "hollow bone" RELATED []
synonym: "os pneumaticum" EXACT [FMA:7478]
synonym: "pneumatic bone" EXACT [FMA:7478]
xref: FMA:7478
xref: galen:PneumaticBone
xref: SCTID:333008005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
intersection_of: UBERON:0001474 ! bone
intersection_of: has_part UBERON:0010528 ! pneumatic cavity of bone
relationship: has_part UBERON:0010528 ! pneumatic cavity of bone

[Term]
id: UBERON:0008194
name: tibiotarsus
namespace: uberon
def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their foot bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus]
property_value: "has_fused_element" UBERON:0000979
property_value: "has_fused_element" UBERON:0001447
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003464 ! hindlimb bone
relationship: develops_from UBERON:0010902 ! tibiotarsus cartilaginous condensation
relationship: part_of UBERON:0001441 ! hindlimb skeleton

[Term]
id: UBERON:0008195
name: tarsometatarsus
namespace: uberon
def: "The tarsometatarsus is a bone that is found in the lower leg of certain tetrapods, namely birds. It is formed from the fusion of several bones found in other types of animals, and homologous to the mammalian tarsal (ankle) and metatarsal (foot) bones. Despite this, the tarsometatarsus of birds is often referred to as just the tarsus or metatarsus." [Wikipedia:Tarsometatarsus]
comment: Taxon notes: found in birds[VAO]
property_value: "has_fused_element" UBERON:0001448
property_value: "has_fused_element" UBERON:0009879
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0005899 ! foot bone
relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilaginous condensation
relationship: part_of UBERON:0001445 ! skeleton of foot

[Term]
id: UBERON:0008196
name: muscle of pectoral girdle
namespace: uberon
synonym: "muscle of shoulder girdle" EXACT [FMA:37347]
synonym: "pectoral girdle muscle" EXACT [FMA:37347]
xref: FMA:37347
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0004471 ! musculature of pectoral girdle

[Term]
id: UBERON:0008199
name: chin
namespace: uberon
def: "In the human anatomy, the chin is the lowermost part of the face. It is formed by the lower front of the mandible. People show a wide variety of chin structures. See Cleft chin. The chin developed as a point of muscular attachment facilitating minute movements of the lips associated with speech. In human evolution, the chin is a cladistic apomorphy, partially defining anatomically modern Humans as distinct from archaic forms." [Wikipedia:Chin]
synonym: "chin %28anatomy%29" RELATED [Wikipedia:Chin]
synonym: "chins" RELATED [Wikipedia:Chin]
synonym: "mental part of face" EXACT [FMA:46495]
synonym: "mental region" EXACT [FMA:46495]
synonym: "mental region of face" EXACT [FMA:46495]
synonym: "regio mentalis" EXACT [FMA:46495, FMA:TA]
xref: FMA:46495
xref: GAID:67
xref: galen:Chin
xref: MESH:A.01.456.505.259
xref: SCTID:362632004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0001456 {source="MESH"} ! face
relationship: part_of UBERON:0001710 {source="MESH"} ! lower jaw

[Term]
id: UBERON:0008202
name: bone of hip region
namespace: uberon
comment: in MA, this includes the femur. i.e. pelvic girdle bone or femur; note that this makes the ilium etc in MA hindlimb bones. in MA this is a hindlimb bone
xref: MA:0000655
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
relationship: overlaps UBERON:0001464 {source="MA"} ! hip

[Term]
id: UBERON:0008229
name: craniocervical region musculature
namespace: uberon
synonym: "head or neck muscle" EXACT [MA:0000571]
synonym: "head or neck muscle" RELATED [MA:0000571]
xref: MA:0000571
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001015 {source="MA"} ! musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0007811 {source="MA"} ! craniocervical region

[Term]
id: UBERON:0008230
name: tibialis
namespace: uberon
def: "Either of two muscles of the calf of the leg." [Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/]
xref: BTO:0000864
xref: MA:0002425
xref: ncithesaurus:Tibialis
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000366 {source="BTO"} ! flexor muscle
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0008231
name: upper back
namespace: uberon
def: "Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax." [FMA:24217]
synonym: "dorsum of thorax" EXACT [FMA:24217]
synonym: "posterior part of thorax" EXACT [FMA:24217]
synonym: "thoracic back" EXACT [FMA:24217]
synonym: "thoracic part of back" EXACT [FMA:24217]
xref: FMA:24217
xref: MA:0000028
xref: SCTID:362666008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000915 {source="MA"} ! thoracic segment of trunk
relationship: part_of UBERON:0001137 ! back

[Term]
id: UBERON:0008242
name: lower back muscle
namespace: uberon
xref: MA:0000502
xref: SCTID:317178000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002324 ! muscle of back
is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle
intersection_of: UBERON:0002324 ! muscle of back
intersection_of: part_of UBERON:0005462 ! lower back
relationship: part_of UBERON:0005462 {source="MA"} ! lower back

[Term]
id: UBERON:0008243
name: upper back muscle
namespace: uberon
xref: MA:0000508
xref: SCTID:305071003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002324 ! muscle of back
is_a: UBERON:0003830 {source="MA"} ! thoracic segment muscle
intersection_of: UBERON:0002324 ! muscle of back
intersection_of: part_of UBERON:0008231 ! upper back
relationship: part_of UBERON:0008231 {source="MA"} ! upper back

[Term]
id: UBERON:0008245
name: pennate muscle
namespace: uberon
def: "A pennate muscle (also called a penniform muscle) is a muscle with fascicles that attach obliquely (in a slanting position) to its tendon. These types of muscles generally allow better stabilization and force production but less flexibility. Individual muscle fibers are formed into bundles of fasciculi and these bundles of fasciculi are formed into bundles of fascicles which compose the entire muscle itself. In a pennate muscle, the fascicles will form an angle with its central tendon. If all the fascicles are on the same side of the tendon, the pennate muscle is called unipennate. Examples of this include certain muscles in the hand. If there are fascicles on both sides of the central tendon, the pennate muscle is called bipennate. The rectus femoris, a large muscle in the quadriceps, is typical. If the central tendon branches within a pennate muscle, the muscle is called multipennate, as seen in the deltoid muscle in the shoulder." [Wikipedia:Pennate_muscle]
comment: note the FMA class does not denote a muscle organ. todo: add child classes
xref: FMA:74993
xref: Wikipedia:Pennate_muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0008247
name: tube foot
namespace: uberon
def: "One of the numerous external, fluid-filled muscular tubes of echinoderms, such as the starfish or sea urchin, serving as organs of locomotion, food handling, and respiration[BTO]. Tube feet consist of two parts: ampulla and podia. Ampulla contain both circular muscles and longitudinal muscle, whereas the podia contain the latter only. Thus the podia use suction to attach to the substratum[WP]." [BTO:0001919, Wikipedia:Tube_feet]
synonym: "tube feet" RELATED PLURAL [Wikipedia:Tube_feet]
xref: BTO:0001919
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000026 ! appendage

[Term]
id: UBERON:0008251
name: water vascular system
namespace: uberon
def: "The water vascular system is a hydraulic system used by echinoderms, such as sea stars and sea urchins, for locomotion, food and waste transportation, and respiration.[1] The system is composed of canals connecting numerous tube feet. Echinoderms move by alternately contracting muscles that force water into the tube feet, causing them to extend and push against the ground, then relaxing to allow the feet to retract.[WP]." [Wikipedia:Water_vascular_system]
xref: BTO:0002125
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 ! anatomical system

[Term]
id: UBERON:0008252
name: tube foot ampulla
namespace: uberon
def: "The constant contraction of ampulla (to extend and retract the tube feet) helps to move a starfish. The ampullae are teeth like structures surrounding the radial canal." [BTO:0002124]
xref: BTO:0002124
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003913 ! tooth-like structure
relationship: part_of UBERON:0008247 ! tube foot
relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system

[Term]
id: UBERON:0008254
name: styliform cartilage
namespace: uberon
def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379]
property_value: "homologous_to" UBERON:0001429
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007844 ! cartilaginous element
relationship: part_of UBERON:0001440 ! forelimb skeleton

[Term]
id: UBERON:0008255
name: right clavicle
namespace: uberon
xref: FMA:13322
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001105 {source="FMA"} ! clavicle
intersection_of: UBERON:0001105 ! clavicle
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0008256
name: left clavicle
namespace: uberon
xref: FMA:13323
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001105 {source="FMA"} ! clavicle
intersection_of: UBERON:0001105 ! clavicle
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism

[Term]
id: UBERON:0008257
name: radial sesamoid
namespace: uberon
def: "In the giant panda, a large digitlike preaxial element that articulates with the scapholunatum and the medial border of the first metacarpal." [ISBN-10:0226313379]
synonym: "os sesamoideum radiale" EXACT [ISBN-10:0226313379]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001435 ! carpal bone
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0007997 ! sesamoid bone of hand
relationship: articulates_with UBERON:0003645 ! metacarpal bone of digit 1
relationship: articulates_with UBERON:0007960 ! scapholunate
relationship: part_of UBERON:0009880 ! carpal skeleton

[Term]
id: UBERON:0008266
name: periodontal ligament
namespace: uberon
def: "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP]." [BTO:0001020, https://github.com/cmungall/uberon/issues/21, Wikipedia:Periodontal_ligament]
comment: note FMA treats periodontium and periodontal ligament as the same
synonym: "alveolar periosteum" RELATED [BTO:0001020]
synonym: "alveolodental ligament" RELATED [BTO:0001020]
synonym: "alveolodental membrane" RELATED [BTO:0001020]
synonym: "desmodontium" RELATED [BTO:0001020]
synonym: "odontoperiosteum" RELATED [BTO:0001020]
synonym: "paradentium" RELATED [BTO:0001020]
synonym: "PDL" RELATED [Wikipedia:Periodontal_ligament]
synonym: "peridental membrane" RELATED [BTO:0001020]
synonym: "peridontal ligament" RELATED []
synonym: "peridontal membrane" RELATED [BTO:0001020]
synonym: "peridontium" RELATED [BTO:0001020]
xref: BTO:0001020
xref: GAID:1259
xref: MA:0002467
xref: SCTID:245775004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0008846 {source="FMA-moved"} ! skeletal ligament
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0000211 ! ligament
intersection_of: part_of UBERON:0001758 ! periodontium
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium

[Term]
id: UBERON:0008269
name: nacre
namespace: uberon
def: "an organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 µm wide and 0.5 µm thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]." [Wikipedia:Nacre]
synonym: "mother of pearl" EXACT [Wikipedia:Nacre]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000463 ! portion of organism substance
is_a: UBERON:0004755 ! skeletal tissue

[Term]
id: UBERON:0008270
name: mollusc shell
namespace: uberon
def: "a calcareous exoskeleton which encloses, supports and protects the soft parts of an animal in the phylum Mollusca, which includes snails, clams, tusk shells, and several other classes. Not all shelled molluscs live in the sea, many live on the land and in freshwater." [Wikipedia:Mollusc_shell]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006612 ! shell

[Term]
id: UBERON:0008283
name: columnella
namespace: uberon
def: "a central anatomical feature of a coiled snail shell or gastropod shell. It is often only clearly visible as a structure when the shell is broken, or sliced in half vertically, or in an X-ray." [Wikipedia:Columella_(gastropod)]
synonym: "columella muscle" RELATED [BTO:0000277]
xref: BTO:0000277
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0008270 ! mollusc shell

[Term]
id: UBERON:0008284
name: columnella muscle
namespace: uberon
def: "The muscle of the central column or axis of a spiral univalve shell." [BTO:0000277, Wikipedia:Columella_(gastropod)#Columellar_muscles]
synonym: "columella muscle" RELATED [BTO:0000277]
xref: BTO:0000277
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0008283 ! columnella

[Term]
id: UBERON:0008296
name: femoral muscle
namespace: uberon
def: "Origin: anterior and lateral surfaces of femur; insertion: patella, common tendon of quadriceps femoris; innervation: femoral; action, extends leg." [BTO:0002542]
synonym: "crureus" RELATED [BTO:0002542]
synonym: "intermediate great muscle" RELATED [BTO:0002542]
synonym: "intermediate vastus muscle" RELATED [BTO:0002542]
synonym: "musculus vastus intermedius" RELATED [BTO:0002542]
xref: BTO:0002542
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 {source="BTO"} ! muscle of leg

[Term]
id: UBERON:0008331
name: clitoral smooth muscle
namespace: uberon
synonym: "clitoris smooth muscle" RELATED [BTO:0005000]
xref: BTO:0005000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 {source="BTO"} ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 {source="BTO"} ! clitoris

[Term]
id: UBERON:0008338
name: plantar part of foot
namespace: uberon
def: "The sole is the bottom of the foot. In humans is the sole of the foot anatomically referred to as the plantar aspect. The equivalent surface in ungulates is the hoof." [Wikipedia:Sole_%28foot%29]
synonym: "pelma" RELATED [Wikipedia:Sole_%28foot%29]
synonym: "planta" EXACT [FMA:TA]
synonym: "plantar region" EXACT [FMA:25000]
synonym: "regio plantaris" EXACT [FMA:TA]
synonym: "sole" EXACT [FMA:25000]
synonym: "sole of foot" EXACT [FMA:25000]
synonym: "sole of foot" RELATED [Wikipedia:Sole_%28foot%29]
synonym: "sole of the foot" RELATED [Wikipedia:Sole_%28foot%29]
synonym: "soles of the feet" RELATED [Wikipedia:Sole_%28foot%29]
xref: BTO:0005078
xref: FMA:25000
xref: galen:SoleOfFoot
xref: ncithesaurus:Plantar_Region
xref: SCTID:57999000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005445 {source="FMA"} ! segment of foot
is_a: UBERON:0008837 ! palmar/plantar part of autopod

[Term]
id: UBERON:0008425
name: mammary ridge
namespace: uberon
def: "A bandlike thickening of ectoderm in the embryo extending from just below the axilla to the inguinal region and giving rise to the mammary glands[Stedmans]. One of two parallel lines, formed by thickenings of the epidermis (the mammary ridge) along the ventral surface of mammals of both sexes. They extend from the upper limbs (arms) to the lower limbs (legs) and are developed in the embryo. They give rise to the mammary glands and nipples but are otherwise usually not visible in the adult. The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. These buds are either located in the thoracic region in primates, in the inguinal area in ungulates or along the entire length of the trunk in rodents and pigs. In humans, milk lines appear in the seventh week of embryonic development. After initial development of the milk lines they go into remission. Nipples develop on the milk lines of mammals. Most humans have two nipples, but in some cases more than two will develop. In most cases, these 'third nipples'—and sometimes fourth nipple—grow along the milk line[WP]." [http://dictionary.reference.com/browse/mammary%20ridge, Wikipedia:Milk_line]
comment: split ridge and milk line?
synonym: "mammary fold" EXACT [http://dictionary.reference.com/browse/mammary+ridge]
synonym: "milk line" RELATED [Wikipedia:Milk_line]
xref: EMAPA:18541
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000924 ! ectoderm

[Term]
id: UBERON:0008426
name: transverse foramen of atlas
namespace: uberon
synonym: "foramen transversarium of atlas" EXACT [FMA:23998]
xref: FMA:23998
xref: SCTID:281220001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000130 ! transverse foramen
is_a: UBERON:0010276 ! vertebral column opening
intersection_of: UBERON:0000130 ! transverse foramen
intersection_of: part_of UBERON:0001092 ! first cervical vertebra
relationship: part_of UBERON:0001092 ! first cervical vertebra

[Term]
id: UBERON:0008427
name: transverse foramen of axis
namespace: uberon
synonym: "foramen transversarium of axis" EXACT [FMA:23999]
xref: FMA:23999
xref: SCTID:281221002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000130 ! transverse foramen
is_a: UBERON:0010276 ! vertebral column opening
intersection_of: UBERON:0000130 ! transverse foramen
intersection_of: part_of UBERON:0001093 ! second cervical vertebra
relationship: part_of UBERON:0001093 ! second cervical vertebra

[Term]
id: UBERON:0008428
name: ceratoglossus
namespace: uberon
def: "main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone." [http://www.medilexicon.com/medicaldictionary.php?t=56655]
synonym: "ceratoglossus muscle" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655]
synonym: "musculus ceratoglossus" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655]
xref: FMA:46720
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus

[Term]
id: UBERON:0008429
name: cervical vertebral foramen
namespace: uberon
xref: FMA:13480
xref: SCTID:280833008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001131 ! vertebral foramen
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0008430
name: lumbar vertebral foramen
namespace: uberon
xref: FMA:24826
xref: SCTID:280835001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001131 ! vertebral foramen
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0008431
name: sacral foramen
namespace: uberon
xref: FMA:31749
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001131 ! vertebral foramen
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0001094 ! sacral vertebra
relationship: part_of UBERON:0001094 ! sacral vertebra

[Term]
id: UBERON:0008432
name: thoracic vertebral foramen
namespace: uberon
xref: FMA:9143
xref: SCTID:280834002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001131 ! vertebral foramen
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0008433
name: lumbar vertebral arch
namespace: uberon
synonym: "arch of lumbar vertebra" EXACT [FMA:16076]
xref: FMA:16076
xref: SCTID:312766000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0003861 ! neural arch
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0008434
name: cervical vertebral arch
namespace: uberon
synonym: "arch of cervical vertebra" EXACT [FMA:23893]
xref: FMA:23893
xref: SCTID:165269004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003458 ! neck bone
is_a: UBERON:0003861 ! neural arch
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0008435
name: vertebral arch of sacral segment
namespace: uberon
xref: FMA:32401
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0003861 ! neural arch
is_a: UBERON:0005179 ! pelvis organ
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0001094 ! sacral vertebra
relationship: part_of UBERON:0001094 ! sacral vertebra

[Term]
id: UBERON:0008436
name: thoracic vertebral arch
namespace: uberon
synonym: "arch of thoracic vertebra" EXACT [FMA:9151]
xref: FMA:9151
xref: SCTID:312764002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003827 ! thoracic segment bone
is_a: UBERON:0003861 ! neural arch
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0008437
name: posterior arch of atlas
namespace: uberon
def: "In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores." [Wikipedia:Posterior_arch]
synonym: "posterior arch" RELATED [Wikipedia:Posterior_arch]
xref: FMA:23977
xref: SCTID:181892007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008434 {source="FMA"} ! cervical vertebral arch
relationship: part_of UBERON:0001092 {source="FMA"} ! first cervical vertebra

[Term]
id: UBERON:0008446
name: flexor pollicis longus muscle
namespace: uberon
def: "A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being 'either rudimentary or absent' in other primates." [Wikipedia:Flexor_pollicis_longus_muscle]
comment: Taxon notes: Modern humans are unique among hominids in having a flexor pollicis longus (FPL) muscle belly that is separate from that of the flexor digitorum profundus (FDP). While the FPL is not a separate muscle belly in extant great apes, a distinct tendon from the FDP belly might be present. In some individuals this tendon tend to act more like a ligament which restricts extension of the interphalangeal joint of the thumb. In orangutans there is a tendon similar in insertion and function to the FPL in humans, but which has an intrinsic origin on the oblique head of the adductor pollicis[WP]
synonym: "flexor pollicis" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
synonym: "flexor pollicis longus" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
synonym: "flexor pollicis muscle" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
synonym: "musculus flexor pollicis longus" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
xref: FMA:38481
xref: SCTID:361818001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004254 {source="Wikipedia"} ! forelimb zeugopod muscle

[Term]
id: UBERON:0008447
name: intertarsal articulation
namespace: uberon
def: "Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation" [Wikipedia:Intertarsal_articulations]
synonym: "articulationes intertarsale" RELATED [MESH:A.02.835.583.378.831]
synonym: "articulationes intertarseae" RELATED [MESH:A.02.835.583.378.831]
synonym: "intermetatarsal joint" RELATED [MESH:A.02.835.583.378.831]
synonym: "intertarsal" RELATED [Wikipedia:Intertarsal_articulations]
synonym: "intertarsal articulation" RELATED [Wikipedia:Intertarsal_articulations]
synonym: "intertarsal joint" RELATED [MESH:A.02.835.583.378.831]
synonym: "tarsal joint" RELATED [MESH:A.02.835.583.378.831]
synonym: "tarsal joints" RELATED [Wikipedia:Intertarsal_articulations]
xref: FMA:44281
xref: GAID:259
xref: MESH:A.02.835.583.378.831
xref: ncithesaurus:Tarsal_Joint
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001487 {source="GAID"} ! joint of foot

[Term]
id: UBERON:0008449
name: trochlear notch
namespace: uberon
def: "The semilunar notch of the ulna (trochlear notch of ulna, greater sigmoid cavity) is a large depression, formed by the olecranon and the coronoid process, and serving for articulation with the trochlea of the humerus. About the middle of either side of this notch is an indentation, which contracts it somewhat, and indicates the junction of the olecranon and the coronoid process. The notch is concave from above downward, and divided into a medial and a lateral portion by a smooth ridge running from the summit of the olecranon to the tip of the coronoid process. The medial portion is the larger, and is slightly concave transversely; the lateral is convex above, slightly concave below." [Wikipedia:Trochlear_notch]
synonym: "incisura trochlearis" RELATED [Wikipedia:Trochlear_notch]
synonym: "semilunar notch" RELATED [Wikipedia:Trochlear_notch]
synonym: "semilunar notch of ulna" EXACT [FMA:23619]
xref: FMA:23619
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna

[Term]
id: UBERON:0008450
name: psoas
namespace: uberon
def: "A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek \"psoa\", the plural meaning \"muscles of the loin\". It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology." [MESH:A.02.633.567.825]
synonym: "psoas muscle" EXACT [MA:0002553]
xref: BTO:0001140
xref: galen:Psoas
xref: MA:0002553
xref: MESH:A.02.633.567.825
xref: ncithesaurus:Psoas_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002378 {source="BTO"} ! muscle of abdomen

[Term]
id: UBERON:0008453
name: rectus capitis anterior
namespace: uberon
def: "The rectus capitis anterior (rectus capitis anticus minor) is a short, flat muscle, situated immediately behind the upper part of the Longus capitis. It arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process, and passing obliquely upward and medialward, is inserted into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum." [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "anterior rectus capitis" EXACT [FMA:46312]
synonym: "anterior rectus capitis muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "anterior vertebral muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "recti capitis anteriores" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitis" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitis anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitis anterior muscle" EXACT [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitus anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitus anterior muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
xref: FMA:46312
xref: SCTID:244838005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column

[Term]
id: UBERON:0008454
name: rectus capitis posterior major
namespace: uberon
def: "The Rectus capitis posterior major (Rectus capitis posticus major) arises by a pointed tendon from the spinous process of the axis, and, becoming broader as it ascends, is inserted into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. As the muscles of the two sides pass upward and lateralward, they leave between them a triangular space, in which the Recti capitis posteriores minores are seen. Its main actions are to extend and rotate the atlanto-occipital joint." [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "greater posterior rectus capitis" EXACT [FMA:32525]
synonym: "recti capitis posteriores major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitis posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitis posterior major muscle" EXACT [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitus posterior major muscle" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
xref: FMA:32525
xref: SCTID:245994002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column

[Term]
id: UBERON:0008455
name: rectus capitis posterior minor
namespace: uberon
def: "The Rectus capitis posterior minor (Rectus capitis posticus minor) arises by a narrow pointed tendon from the tubercle on the posterior arch of the atlas, and, widening as it ascends, is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. The synergists are the rectus capitus posterior major and Obliquus capitis. Connective tissue bridges were noted at the atlanto-occipital junction between the rectus capitis posterior minor muscle and the dorsal spinal dura. The perpendicular arrangement of these fibers appears to restrict dural movement toward the spinal cord. The ligamentum nuchae was found to be continuous with the posterior cervical spinal dura and the lateral portion of the occipital bone. Anatomic structures innervated by cervical nerves C1-C3 have the potential to cause headache pain. Included are the joint complexes of the upper 3 cervical segments, the dura mater, and spinal cord. The dura-muscular, dura-ligamentous connections in the upper cervical spine and occipital areas may provide anatomic and physiologic answers to the cause of the cervicogenic headache. This proposal would further explain manipulation's efficacy in the treatment of cervicogenic headache ." [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "lesser posterior rectus capitis" EXACT [FMA:32526]
synonym: "recti capitis posteriores minores" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitis posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitis posterior minor muscle" EXACT [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitus posterior minor muscle" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
xref: FMA:32526
xref: SCTID:245995001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column

[Term]
id: UBERON:0008456
name: superior articular process of lumbar vertebra
namespace: uberon
synonym: "cranial articular process of lumbar vertebra" EXACT [FMA:16126]
xref: FMA:16126
xref: SCTID:305677003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001079 ! superior articular process of vertebra
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0008457
name: superior articular process of sacral vertebra
namespace: uberon
synonym: "articular process of sacral segment" EXACT [FMA:16215]
synonym: "processus articularis superior (os sacrum)" EXACT [FMA:16215]
synonym: "processus articularis superior ossis sacri" EXACT [FMA:TA]
synonym: "superior articular process of sacral segment" EXACT [FMA:16215]
synonym: "superior articular process of sacrum" EXACT [FMA:16215]
xref: FMA:16215
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001079 ! superior articular process of vertebra
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0001094 ! sacral vertebra
relationship: part_of UBERON:0001094 ! sacral vertebra

[Term]
id: UBERON:0008459
name: superior articular process of cervical vertebra
namespace: uberon
xref: FMA:23969
xref: SCTID:57767002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001079 ! superior articular process of vertebra
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0008460
name: superior articular process of thoracic vertebra
namespace: uberon
synonym: "cranial articular process of thoracic vertebra" EXACT [FMA:9155]
synonym: "processus articularis (zygapophysis) thoracicus superior" EXACT [FMA:9155]
synonym: "superior apophyseal process" EXACT [FMA:9155]
synonym: "superior zygapophysis" EXACT [FMA:9155]
xref: FMA:9155
xref: SCTID:367801006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001079 ! superior articular process of vertebra
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0008461
name: inferior articular process of lumbar vertebra
namespace: uberon
synonym: "caudal articular process of lumbar vertebra" EXACT [FMA:16127]
xref: FMA:16127
xref: SCTID:306283004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra

[Term]
id: UBERON:0008462
name: inferior articular process of cervical vertebra
namespace: uberon
xref: FMA:23970
xref: SCTID:61633005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra

[Term]
id: UBERON:0008463
name: inferior articular process of thoracic vertebra
namespace: uberon
synonym: "caudal articular process of thoracic vertebra" EXACT [FMA:9156]
synonym: "inferior apophyseal process" EXACT [FMA:9156]
synonym: "inferior zygapophysis" EXACT [FMA:9156]
synonym: "processus articularis (zygapophysis) thoracicus inferior" EXACT [FMA:9156]
xref: FMA:9156
xref: SCTID:367814007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra

[Term]
id: UBERON:0008464
name: abductor hallucis muscle
namespace: uberon
def: "The Abductor hallucis lies along the medial border of the foot and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe." [Wikipedia:Abductor_hallucis_muscle]
synonym: "abductor hallucis" RELATED [Wikipedia:Abductor_hallucis_muscle]
xref: FMA:37448
xref: SCTID:181723001
xref: Wikipedia:Abductor_hallucis_muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001498 ! muscle of foot
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0008338 ! plantar part of foot

[Term]
id: UBERON:0008465
name: abductor pollicis brevis muscle
namespace: uberon
def: "The abductor pollicis brevis is a muscle in the hand that functions as an abductor of the thumb." [Wikipedia:Abductor_pollicis_brevis_muscle]
synonym: "abductor brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle]
synonym: "abductor pollicis brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle]
xref: FMA:37373
xref: SCTID:181648007
xref: Wikipedia:Abductor_pollicis_brevis_muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001500 ! muscle of hand
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0008488
name: cremaster muscle
namespace: uberon
def: "The cremaster muscle is a muscle that covers the testis." [Wikipedia:Cremaster_muscle]
synonym: "cremaster" EXACT [FMA:21531]
synonym: "cremaster muscle" RELATED [Wikipedia:Cremaster_muscle]
synonym: "cremasteric muscle" RELATED [Wikipedia:Cremaster_muscle]
synonym: "muscle of riolan (cremaster)" EXACT [FMA:21531]
synonym: "musculus cremaster" EXACT [FMA:TA]
synonym: "musculus cremaster <male>" EXACT [FMA:TA]
xref: EMAPA:31250
xref: FMA:21531
xref: ncithesaurus:Cremaster_Muscle
xref: SCTID:244948006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ

[Term]
id: UBERON:0008521
name: gluteus minimus
namespace: uberon
def: "The gluteus minimus (or glutC&us minimus), the smallest of the three gluteal muscles, is situated immediately beneath the gluteus medius." [Wikipedia:Gluteus_minimus_muscle]
synonym: "glut%c3%a6us minimus" RELATED [Wikipedia:Gluteus_minimus_muscle]
synonym: "glutaeus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle]
synonym: "gluteus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle]
synonym: "gluteus minimus muscle" EXACT []
xref: FMA:22317
xref: SCTID:181676004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle
relationship: attached_to UBERON:0002503 {source="FMA"} ! greater trochanter
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle

[Term]
id: UBERON:0008522
name: nasal muscle
namespace: uberon
synonym: "muscle of nose" EXACT [Obol:automatic]
xref: FMA:73758
xref: ncithesaurus:Nasal_Muscle
xref: SCTID:244730009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001577 {source="FMA"} ! muscle of face
is_a: UBERON:0003831 ! respiratory system muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0000004 ! olfactory apparatus

[Term]
id: UBERON:0008523
name: infrahyoid muscle
namespace: uberon
def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoid" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoid muscle" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoidala" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "strap muscle" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "strap muscles" RELATED [Wikipedia:Infrahyoid_muscles]
xref: FMA:13338
xref: SCTID:244829008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005493 ! hyoid muscle

[Term]
id: UBERON:0008529
name: piriformis
namespace: uberon
def: "The piriformis (from Latin piriformis = \"pear shaped\") is a muscle in the gluteal region of the lower limb." [Wikipedia:Piriformis_muscle]
synonym: "m.piriformis" EXACT [FMA:19082]
synonym: "musculus piriformis" RELATED [Wikipedia:Piriformis_muscle]
synonym: "piriform muscle" RELATED [Wikipedia:Piriformis_muscle]
synonym: "piriformis" RELATED [Wikipedia:Piriformis_muscle]
xref: FMA:19082
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle
relationship: attached_to UBERON:0002503 {source="FMA"} ! greater trochanter
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle

[Term]
id: UBERON:0008537
name: quadratus femoris
namespace: uberon
def: "The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum." [Wikipedia:Quadratus_femoris_muscle]
synonym: "quadratus femoris muscle" RELATED [Wikipedia:Quadratus_femoris_muscle]
xref: FMA:22321
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle

[Term]
id: UBERON:0008538
name: muscle of posterior compartment of thigh
namespace: uberon
def: "The posterior fascial compartment of the thigh contains the knee flexors and hip extensors. It consists of the following muscles: biceps femoris semitendinosus semimembranosus The muscles here (except for the short head of the biceps femoris) are the hamstrings." [Wikipedia:Posterior_compartment_of_thigh]
synonym: "posterior fascial compartment of thigh" RELATED [Wikipedia:Posterior_compartment_of_thigh]
synonym: "posterior femoral muscle" EXACT [FMA:22427]
synonym: "posterior femoral muscles" RELATED [Wikipedia:Posterior_compartment_of_thigh]
xref: FMA:22427
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004252 {source="FMA"} ! hindlimb stylopod muscle

[Term]
id: UBERON:0008544
name: splenius cervicis
namespace: uberon
def: "The splenius cervicis (splenius colli) arises by a narrow tendinous band from the spinous processes of the third to the sixth thoracic vertebrae; it is inserted, by tendinous fasciculi, into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae." [Wikipedia:Splenius_cervicis_muscle]
synonym: "splenius cervicis muscle" RELATED [Wikipedia:Splenius_cervicis_muscle]
xref: FMA:22681
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002252 {source="FMA"} ! splenius

[Term]
id: UBERON:0008546
name: iliocostalis cervicis
namespace: uberon
def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior)." [Wikipedia:Iliocostalis]
synonym: "erector spinae - iliocostalis" RELATED [Wikipedia:Iliocostalis]
synonym: "iliocostalis cervicis muscle" RELATED [Wikipedia:Iliocostalis]
synonym: "iliocostalis lumborum" RELATED [Wikipedia:Iliocostalis]
synonym: "iliocostalis muscle" RELATED [Wikipedia:Iliocostalis]
synonym: "iliocostalis thoracis" RELATED [Wikipedia:Iliocostalis]
synonym: "iliocostalis thoracis muscle" RELATED [Wikipedia:Iliocostalis]
xref: FMA:22704
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002251 {source="FMA"} ! iliocostalis

[Term]
id: UBERON:0008549
name: prevertebral muscle
namespace: uberon
def: "The prevertebral muscles are the muscles located between the prevertebral fascia (older definition) and the vertebral column, i.e. , the longus capitis and longus colli muscles. It also includes the recti capitis anterior and lateralis." [Wikipedia:Prevertebral_muscles]
synonym: "flexor muscle of vertebral column" EXACT [FMA:32514]
xref: FMA:32514
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column

[Term]
id: UBERON:0008571
name: suprahyoid muscle
namespace: uberon
def: "The term suprahyoid refers to the region above (superior to) the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [Wikipedia:Suprahyoid_muscles]
synonym: "suprahyoid" RELATED [Wikipedia:Suprahyoid_muscles]
synonym: "suprahyoidala" RELATED [Wikipedia:Suprahyoid_muscles]
xref: FMA:46290
xref: SCTID:244824003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005493 ! hyoid muscle

[Term]
id: UBERON:0008572
name: posterior crico-arytenoid
namespace: uberon
def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "cricoaryt%c3%a6noideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "cricoarytaenoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "posterior cricoarytenoid muscle" EXACT [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "posterior cricoarytenoideus" EXACT [FMA:46576]
xref: FMA:46576
xref: SCTID:244812005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010932 ! crico-arytenoid muscle

[Term]
id: UBERON:0008573
name: lateral crico-arytenoid
namespace: uberon
def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoaryt%c3%a6noideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoaryt%c3%a6noideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoarytaenoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoarytaenoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "lateral cricoarytenoid muscle" EXACT [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "lateral cricoarytenoideus" EXACT [FMA:46579]
xref: FMA:46579
xref: SCTID:244813000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010932 ! crico-arytenoid muscle

[Term]
id: UBERON:0008574
name: transverse arytenoid
namespace: uberon
def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [Wikipedia:Transverse_arytenoid]
synonym: "arytenoid transversus" RELATED []
synonym: "tranverse arytenoid muscle" RELATED [Wikipedia:Transverse_arytenoid]
xref: FMA:46582
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010958 ! arytenoid muscle

[Term]
id: UBERON:0008575
name: oblique arytenoid
namespace: uberon
def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [Wikipedia:Oblique_arytenoid]
synonym: "arytenoid obliquus" RELATED []
synonym: "oblique arytenoid muscle" RELATED [Wikipedia:Oblique_arytenoid]
xref: FMA:46583
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010958 ! arytenoid muscle

[Term]
id: UBERON:0008576
name: thyro-arytenoid
namespace: uberon
def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoaryt%c3%a6noideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoarytaenoideus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoarytaenoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoepiglotticus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyro-arytenoid %26 vocalis" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyro-arytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyroaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyroarytenoid" EXACT [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyroarytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "ventricularis" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "ventricularis muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
xref: FMA:46588
xref: ncithesaurus:Thyroarytenoid_Muscle
xref: SCTID:91561000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx

[Term]
id: UBERON:0008577
name: vocalis
namespace: uberon
def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [Wikipedia:Vocal_muscle]
synonym: "vocal muscle" EXACT [FMA:46591]
synonym: "vocalis muscle" EXACT []
xref: FMA:46591
xref: ncithesaurus:Vocalis_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx
relationship: part_of UBERON:0008576 {source="Wikipedia"} ! thyro-arytenoid

[Term]
id: UBERON:0008582
name: superior longitudinal muscle of tongue
namespace: uberon
def: "The Longitudinalis linguC& superior (Superior lingualis) is a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis lingu%c3%a6 superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "musculus longitudinalis superior" EXACT [FMA:46693]
synonym: "superior longitudinal muscle" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
xref: FMA:46693
xref: SCTID:244790006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue

[Term]
id: UBERON:0008583
name: transverse muscle of tongue
namespace: uberon
def: "The Transversus linguC& (tansverse lingualis) is a muscle of the tongue. It consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transverse lingual muscle" EXACT [FMA:46695]
synonym: "transverse muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus lingu%c3%a6" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus linguae" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
xref: FMA:46695
xref: SCTID:244792003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue

[Term]
id: UBERON:0008584
name: vertical muscle of tongue
namespace: uberon
def: "The Verticalis linguC& (Vertical lingualis) is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue]
synonym: "vertical lingual muscle" EXACT [FMA:46696]
synonym: "vertical muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis lingu%c3%a6" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis lingu%c3%a6 muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
xref: FMA:46696
xref: SCTID:244793008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue

[Term]
id: UBERON:0008585
name: levator veli palatini
namespace: uberon
def: "The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side." [Wikipedia:Levator_veli_palatini]
synonym: "levator palati" RELATED [Wikipedia:Levator_veli_palatini]
synonym: "levator veli" RELATED [Wikipedia:Levator_veli_palatini]
synonym: "levator veli palatini muscle" RELATED [Wikipedia:Levator_veli_palatini]
synonym: "levator velum palatini muscle" RELATED [Wikipedia:Levator_veli_palatini]
xref: FMA:46727
xref: SCTID:244795001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003682 {source="FMA"} ! palatal muscle

[Term]
id: UBERON:0008586
name: tensor veli palatini
namespace: uberon
def: "The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate." [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor palati" RELATED [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor palati muscle" RELATED [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor veli palatini" RELATED [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor veli palatini muscle" EXACT []
xref: FMA:46730
xref: SCTID:361815003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003682 {source="FMA"} ! palatal muscle

[Term]
id: UBERON:0008588
name: procerus
namespace: uberon
def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [Wikipedia:Procerus_muscle]
synonym: "depressor glabellae" RELATED [Wikipedia:Procerus_muscle]
synonym: "procerus muscle" RELATED [Wikipedia:Procerus_muscle]
synonym: "pyramidalis nasi" RELATED [Wikipedia:Procerus_muscle]
xref: FMA:46769
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle

[Term]
id: UBERON:0008589
name: depressor septi nasi
namespace: uberon
def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor al%c3%a6 nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor alae nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor septi" EXACT [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor septi nasi muscle" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
xref: FMA:46777
xref: SCTID:244733006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle

[Term]
id: UBERON:0008591
name: depressor supercilii
namespace: uberon
def: "The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella." [Wikipedia:Depressor_supercilii_muscle]
synonym: "depressor supercilii muscle" RELATED [Wikipedia:Depressor_supercilii_muscle]
xref: FMA:46798
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0008592
name: levator labii superioris alaeque nasi
namespace: uberon
def: "The levator labii superioris alaeque nasi muscle is, translated from Latin, the \"lifter of the upper lip and of the wing of the nose\". It has the longest name of any muscle in an animal." [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "alaeque" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "elvis muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "levator labii superioris alaequae nasi muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "levator labii superioris alaeque nasi" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
xref: FMA:46802
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0008593
name: zygomaticus major
namespace: uberon
def: "The Zygomatic major is a muscle of the human body. It is a muscle of facial expression which draws the angle of the mouth superiorly and posteriorly. Like all muscles of facial expression, the zygomatic major is innervated by the facial nerve (Cranial Nerve VII). The Zygomaticus extends from each zygomatic arch to the corners of the mouth. It raises the corners of the mouth when a person smiles. Dimples may be caused by variations in the structure of this muscle." [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomatic major" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomatic major muscle" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomatic muscle" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomaticcus major" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomaticus major" RELATED [Wikipedia:Zygomaticus_major_muscle]
xref: FMA:46810
xref: ncithesaurus:Zygomaticus_Major
xref: SCTID:244739005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010437 ! zygomaticus muscle

[Term]
id: UBERON:0008594
name: zygomaticus minor
namespace: uberon
def: "The zygomaticus minor is a muscle of facial expression. It originates from malar bone and continues with orbicularis oculi on the lateral face of the Levator labii superioris and then inserts into the outer part of the upper lip. Do not confuse this with the Zygomaticus major, which insets into the angle of the mouth. It draws the upper lip backward, upward, and outward (used in making sad facial expressions). &lt;/gallery&gt; Like all muscles of facial expression, it is innervated by the facial nerve (CN VII)." [Wikipedia:Zygomaticus_minor_muscle]
synonym: "zygomaticus minor" RELATED [Wikipedia:Zygomaticus_minor_muscle]
xref: FMA:46811
xref: ncithesaurus:Zygomaticus_Minor
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010437 ! zygomaticus muscle

[Term]
id: UBERON:0008595
name: levator anguli oris
namespace: uberon
def: "The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris." [Wikipedia:Levator_anguli_oris]
synonym: "caninus" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "caninus muscle" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "levator anguli oris muscle" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "musculus levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris]
xref: FMA:46822
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0008596
name: mentalis
namespace: uberon
def: "The Mentalis is a paired central muscle of the lower lip, situated at the tip of the chin. It raises and pushes up the lower lip, causing wrinkling of the chin, as in doubt or displeasure. It is ometimes referred to as the \"pouting muscle. \" Its fibers arise from the incisive fossa of the mandible, then course vertically downward to insert in the skin of the chin. A movement disorder of the mentalis muscle is Geniospasm which is a benign but socially excluding genetic disorder." [Wikipedia:Mentalis]
synonym: "mentalis muscle" EXACT [Wikipedia:Mentalis]
synonym: "musculus mentalis" RELATED [Wikipedia:Mentalis]
xref: FMA:46825
xref: SCTID:244744003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0008597
name: depressor anguli oris
namespace: uberon
def: "The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth." [Wikipedia:Depressor_anguli_oris_muscle]
synonym: "depressor anguli oris" RELATED [Wikipedia:Depressor_anguli_oris_muscle]
synonym: "triangularis" RELATED [Wikipedia:Depressor_anguli_oris_muscle]
synonym: "triangularis muscle" RELATED [Wikipedia:Depressor_anguli_oris_muscle]
xref: FMA:46828
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0008598
name: risorius
namespace: uberon
def: "The risorius arises in the fascia over the parotid gland and, passing horizontally forward, superficial to the platysma, inserts onto the skin at the angle of the mouth. It is a narrow bundle of fibers, broadest at its origin, but varies much in its size and form." [Wikipedia:Risorius]
synonym: "risorius muscle" RELATED [Wikipedia:Risorius]
xref: FMA:46838
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0008603
name: helicis major
namespace: uberon
def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [Wikipedia:Helicis_major]
xref: FMA:48968
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0008604
name: helicis minor
namespace: uberon
def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [Wikipedia:Helicis_minor]
xref: FMA:48971
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0008605
name: tragicus
namespace: uberon
def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [Wikipedia:Tragicus]
xref: FMA:48974
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0008606
name: antitragicus
namespace: uberon
def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [Wikipedia:Antitragicus]
xref: FMA:48980
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0008607
name: transverse muscle of auricle
namespace: uberon
def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [Wikipedia:Transverse_muscle_of_auricle]
synonym: "transverse muscle of pinna" EXACT [FMA:48983]
synonym: "transversus auriculae" EXACT [Wikipedia:Transverse_muscle_of_auricle]
synonym: "transversus auricularis" EXACT [FMA:48983]
xref: FMA:48983
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0008608
name: oblique muscle of auricle
namespace: uberon
def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [Wikipedia:Oblique_muscle_of_auricle]
synonym: "oblique muscle of pinna" EXACT [FMA:48986]
synonym: "obliquus auricul%c3%a6" RELATED [Wikipedia:Oblique_muscle_of_auricle]
synonym: "obliquus auriculae" EXACT [Wikipedia:Oblique_muscle_of_auricle]
synonym: "obliquus auricularis muscle" EXACT [FMA:48986]
xref: FMA:48986
xref: SCTID:244768006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0008609
name: transversus menti
namespace: uberon
def: "The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face." [Wikipedia:Transverse_muscle_of_the_chin]
synonym: "transverse menti" EXACT [FMA:49080]
synonym: "transversus menti" RELATED [Wikipedia:Transverse_muscle_of_the_chin]
xref: FMA:49080
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0008611
name: scalene muscle
namespace: uberon
def: "The scalene muscles (from greek ON:N1N;N7N=OO, \"skew\") are a group of three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8." [Wikipedia:Scalene_muscles]
synonym: "lateral cervical muscle" RELATED [Wikipedia:Scalene_muscles]
synonym: "lateral cervical muscles" RELATED [Wikipedia:Scalene_muscles]
synonym: "lateral vertebral muscle" RELATED [Wikipedia:Scalene_muscles]
synonym: "m scalenus" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalene muscle" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalene muscles" EXACT [Wikipedia:Scalene_muscles]
synonym: "scalenes" RELATED [Wikipedia:Scalene_muscles]
synonym: "scaleni" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalenus" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalenus muscle" EXACT [FMA:64829]
xref: FMA:64829
xref: ncithesaurus:Scalene_Muscle
xref: SCTID:244843003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002377 {source="FMA"} ! muscle of neck

[Term]
id: UBERON:0008612
name: muscle of pelvic diaphragm
namespace: uberon
def: "The pelvic floor or pelvic diaphragm is composed of muscle fibers of the levator ani, the coccygeus, and associated connective tissue which span the area underneath the pelvis. The pelvic diaphragm is a muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. The pelvic floor separates the pelvic cavity above from the perineal region below. The right and left levator ani lie almost horizontally in the floor of the pelvis, separated by a narrow gap that transmits the urethra, vagina, and anal canal. The levator ani is usually considered in three parts: pubococcygeus, puborectalis, and iliococcygeus. The pubococcygeus, the main part of the levator, runs backward from the body of the pubis toward the coccyx and may be damaged during parturition. Some fibers are inserted into the prostate, urethra, and vagina. The right and left puborectalis unite behind the anorectal junction to form a muscular sling . Some regard them as a part of the sphincter ani externus. The iliococcygeus, the most posterior part of the levator ani, is often poorly developed. The coccygeus, situated behind the levator ani and frequently tendinous as much as muscular, extends from the ischial spine to the lateral margin of the sacrum and coccyx. The pelvic cavity of the true pelvis has the pelvic floor as its inferior border (and the pelvic brim as its superior border. ) The perineum has the pelvic floor as its superior border. Some sources do not consider \"pelvic floor\" and \"pelvic diaphragm\" to be identical, with the \"diaphragm\" consisting of only the levator ani and coccygeus, while the \"floor\" also includes the perineal membrane and deep perineal pouch. However, other sources include the fascia as part of the diaphragm. In practice, the two terms are often used interchangeably. Inferiorly, the pelvic floor extends into the anal triangle." [Wikipedia:Pelvic_floor]
synonym: "diaphragm of the pelvis" RELATED [Wikipedia:Pelvic_floor]
synonym: "muscle of pelvic floor" EXACT [FMA:64856]
synonym: "pelvic diaphragm" RELATED [Wikipedia:Pelvic_floor]
synonym: "pelvic diaphragm muscle" EXACT [FMA:64856]
synonym: "pelvic floor muscles" RELATED [Wikipedia:Pelvic_floor]
synonym: "pelvic muscles" RELATED [Wikipedia:Pelvic_floor]
xref: FMA:64856
xref: ncithesaurus:Pelvic_Floor_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001325 {source="FMA"} ! muscle of pelvis

[Term]
id: UBERON:0008617
name: innermost intercostal muscle
namespace: uberon
def: "The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly." [Wikipedia:Innermost_intercostal_muscle]
synonym: "musculus intercostalis intimus" RELATED [Wikipedia:Innermost_intercostal_muscle]
xref: FMA:9758
xref: SCTID:368054008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001111 {source="FMA"} ! intercostal muscle

[Term]
id: UBERON:0008618
name: subcostal muscle
namespace: uberon
def: "The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni." [Wikipedia:Subcostalis_muscle]
synonym: "subcostal muscles" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostales" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostales muscle" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostales muscles" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostalis" RELATED [Wikipedia:Subcostalis_muscle]
xref: FMA:9759
xref: SCTID:244914005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002426 {source="FMA"} ! chest muscle

[Term]
id: UBERON:0008622
name: scalenus anterior
namespace: uberon
def: "The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove." [Wikipedia:Scalenus_anterior]
synonym: "anterior scalene" EXACT [Wikipedia:Scalenus_anterior]
synonym: "scalenus anterior muscle" RELATED [Wikipedia:Scalenus_anterior]
synonym: "scalenus anticus" RELATED [Wikipedia:Scalenus_anterior]
xref: FMA:13385
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008611 {source="FMA"} ! scalene muscle

[Term]
id: UBERON:0008712
name: stylohyoid
namespace: uberon
def: "The stylohyoid muscle is a slender muscle, lying anterior, and superior of the posterior belly of the digastric muscle. It shares this muscle's innervation by the facial nerve." [Wikipedia:Stylohyoid_muscle]
synonym: "musculus stylohyoideus" RELATED []
synonym: "stylohyoid" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus muscle" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus muscles" RELATED [Wikipedia:Stylohyoid_muscle]
xref: FMA:9625
xref: SCTID:244826001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle

[Term]
id: UBERON:0008713
name: pectoral girdle and thoracic body wall skeletal muscle
namespace: uberon
xref: EHDAA2:0001421
xref: RETIRED_EHDAA2:0001422
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue

[Term]
id: UBERON:0008715
name: muscle tissue of prostate
namespace: uberon
synonym: "prostate gland muscle tissue" EXACT [OBOL:automatic]
synonym: "prostate muscle tissue" EXACT [OBOL:automatic]
xref: ncithesaurus:Prostatic_Muscular_Tissue
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
is_a: UBERON:0005156 ! reproductive structure
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland

[Term]
id: UBERON:0008772
name: proximal epiphysis of tibia
namespace: uberon
synonym: "head of tibia" EXACT [FMA:33113]
synonym: "proximal end of tibia" EXACT [FMA:33113]
synonym: "upper end of tibia" EXACT [FMA:33113]
xref: FMA:33113
xref: ncithesaurus:Head_of_the_Tibia
xref: SCTID:302526005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004383 ! epiphysis of tibia
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia

[Term]
id: UBERON:0008775
name: proximal epiphysis of fibula
namespace: uberon
synonym: "head of fibula" EXACT [FMA:33729]
synonym: "proximal end of fibula" EXACT [FMA:33729]
synonym: "upper end of fibula" EXACT [FMA:33729]
xref: FMA:33729
xref: ncithesaurus:Head_of_the_Fibula
xref: SCTID:182080006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004388 ! epiphysis of fibula
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
relationship: part_of UBERON:0001446 ! fibula

[Term]
id: UBERON:0008777
name: hypaxial musclulature
namespace: uberon
def: "trunk muscles that lie ventral to the horizontal septum of the vertebrae." [Wikipedia:Epaxial_and_Hypaxial_muscles]
synonym: "hypaxial muscle" RELATED [XAO:0003228]
xref: AAO:0000228
xref: XAO:0003228
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: develops_from UBERON:0003895 ! hypaxial myotome region
relationship: develops_from UBERON:0003895 ! hypaxial myotome region
relationship: part_of UBERON:0001774 {source="XAO"} ! muscle of trunk

[Term]
id: UBERON:0008778
name: epaxial musclulature
namespace: uberon
def: "trunk muscles that lies dorsal to the horizontal septum." [Wikipedia:Epaxial_and_Hypaxial_muscles]
synonym: "epaxial muscle" EXACT [XAO:0003229]
xref: AAO:0000142
xref: XAO:0003229
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004479 ! musculature of trunk
intersection_of: UBERON:0001015 ! musculature
intersection_of: develops_from UBERON:0003900 ! epaxial myotome region
relationship: develops_from UBERON:0003900 ! epaxial myotome region
relationship: part_of UBERON:0001774 {source="XAO"} ! muscle of trunk

[Term]
id: UBERON:0008779
name: subclavius
namespace: uberon
def: "The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla." [Wikipedia:Subclavius_muscle]
synonym: "subclavicular muscle" RELATED [Wikipedia:Subclavius_muscle]
xref: FMA:13410
xref: ncithesaurus:Subclavius
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle

[Term]
id: UBERON:0008784
name: lower limb segment
namespace: uberon
synonym: "free lower limb segment" EXACT [FMA:24877]
synonym: "free lower limb subdivision" EXACT [FMA:24877]
synonym: "segment of free lower limb" EXACT [FMA:24877]
synonym: "subdivision of free lower limb" EXACT [FMA:24877]
xref: FMA:24877
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
intersection_of: UBERON:0002529 ! limb segment
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb

[Term]
id: UBERON:0008785
name: upper limb segment
namespace: uberon
synonym: "free upper limb segment" EXACT [FMA:24876]
synonym: "free upper limb subdivision" EXACT [FMA:24876]
synonym: "segment of free upper limb" EXACT [FMA:24876]
synonym: "subdivision of free upper limb" EXACT [FMA:24876]
xref: FMA:24876
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
intersection_of: UBERON:0002529 ! limb segment
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0008786
name: third trochanter
namespace: uberon
def: "The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed." [Wikipedia:Third_trochanter]
xref: FMA:75824
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter
relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur

[Term]
id: UBERON:0008787
name: fourth trochanter
namespace: uberon
def: "a knob-like feature on the medial side of the femur that serves as a muscle attachment." [Wikipedia:Fourth_trochanter]
comment: The fourth trochanter first appeared in the Erythrosuchidae, large basal archosaurian predators of the early Triassic period. This seemingly insignificant detail may have made the evolution of dinosaurs possible (all early dinosaurs and many later ones were bipeds), and may also be connected with the ability of the archosaurs or their immediate ancestors to survive the catastrophic Permian-Triassic extinction event[WP].
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter

[Term]
id: UBERON:0008788
name: posterior cranial fossa
namespace: uberon
def: "The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE." [MESH:A.01.456.830.200, Wikipedia:Posterior_cranial_fossa]
synonym: "posterior fossa" BROAD [ncithesaurus:Posterior]
xref: FMA:54368
xref: GAID:85
xref: MESH:A.01.456.830.200
xref: ncithesaurus:Posterior_Fossa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004704 ! bone fossa
is_a: UBERON:0008789 ! cranial fossa
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0008789
name: cranial fossa
namespace: uberon
def: "any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity" [http://mw1.merriam-webster.com/medical/cranial%20fossa]
comment: editor note - todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004704 ! bone fossa
intersection_of: UBERON:0004704 ! bone fossa
intersection_of: part_of UBERON:0003128 ! cranium
relationship: part_of UBERON:0003128 ! cranium

[Term]
id: UBERON:0008790
name: rugal fold
namespace: uberon
def: "a ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [http://medical-dictionary.thefreedictionary.com/Rugal+folds, Wikipedia:Rugae]
synonym: "ruga" EXACT [Wikipedia:Rugae]
synonym: "rugae" RELATED PLURAL [Wikipedia:Rugae]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000344 ! mucosa

[Term]
id: UBERON:0008799
name: transverse palatine fold
namespace: uberon
def: "a masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances." [http://www.drugs.com/dict/transverse-palatine-fold.html]
comment: note that this class refers to the singular and the FMA class refers to the set. In future this class may be split.
synonym: "palatine fold" EXACT [FMA:75652]
synonym: "palatine rugae" EXACT PLURAL [FMA:75652]
synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
synonym: "plicae palatinae transversae" EXACT [FMA:75652, FMA:TA]
synonym: "ruga of palate" EXACT [UBERON:cjm]
synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
synonym: "rugae of palate" EXACT PLURAL [UBERON:cjm]
synonym: "rugae palatinae" EXACT PLURAL [FMA:75652, FMA:TA]
synonym: "transverse palatine folds" EXACT PLURAL [FMA:75652]
synonym: "transverse palatine folds set" EXACT PLURAL [FMA:75652]
synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
xref: FMA:75652
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0008790 ! rugal fold
intersection_of: UBERON:0008790 ! rugal fold
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate

[Term]
id: UBERON:0008804
name: stylopharyngeus
namespace: uberon
def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle]
synonym: "M. stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle]
synonym: "musculus stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle]
synonym: "stylopharyngeus muscle" EXACT [Wikipedia:Stylopharyngeus_muscle]
xref: FMA:46664
xref: ncithesaurus:Stylopharyngeus
xref: SCTID:244806000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3

[Term]
id: UBERON:0008809
name: foramina of scarpa
namespace: uberon
def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [Wikipedia:Foramina_of_Scarpa]
synonym: "foramina of scarpa" RELATED [Wikipedia:Foramina_of_Scarpa]
xref: Wikipedia:Foramina_of_Scarpa
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0005871 ! palatine process of maxilla
relationship: surrounds UBERON:0008810 ! nasopalatine nerve

[Term]
id: UBERON:0008810
name: nasopalatine nerve
namespace: uberon
def: "One branch of the posterior superior nasal branches (trigeminal, maxillary branch), longer and larger than the others, is named the nasopalatine nerve (sometimes called the long sphenopalatine nerve). It enters the nasal cavity through the sphenopalatine foramen, passes across the roof of the nasal cavity below the orifice of the sphenoidal sinus to reach the septum, and then runs obliquely downward and forward between the periosteum and mucous membrane of the lower part of the septum. It descends to the roof of the mouth through the incisive canal and communicates with the corresponding nerve of the opposite side and with the greater palatine nerve. It supplies the palatal structures around the upper central and lateral incisors and the canines (the upper front six teeth). It also furnishes a few filaments to the mucous membrane of the nasal septum. The medial superior posterior nasal branches of maxillary nerve usually branches from the nasopalatine nerve." [Wikipedia:Nasopalatine_nerve]
synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve]
synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve]
synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve]
synonym: "Scarpa's nerve" EXACT [FMA:52797]
xref: FMA:52797
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0000377 {source="FMA"} ! maxillary nerve

[Term]
id: UBERON:0008811
name: intromittent organ
namespace: uberon
def: "an external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]." [Wikipedia:Intromittent_organ]
comment: this is a broad grouping class connecting a number of different analagous organs by their function. We place the insect aedeagus here rather than penis, although this is somewhat arbitrary given the broadness of the current definition
subset: grouping_class
subset: organ_slim
synonym: "aedeagus" NARROW SENSU [FBbt:00004850]
xref: AAO:0010255
xref: FBbt:00004850
xref: HAO:0000091
xref: TGMA:0000585
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003133 ! reproductive organ
is_a: UBERON:0003135 ! male reproductive organ
relationship: part_of UBERON:0000079 ! male reproductive system

[Term]
id: UBERON:0008813
name: helicotrema
namespace: uberon
def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [Wikipedia:Helicotrema]
synonym: "apex of cochlea" BROAD [Wikipedia:Cochlea]
synonym: "cochlear apex" BROAD [Wikipedia:Cochlea]
synonym: "Scarpa's orifice" EXACT [FMA:61275]
xref: FMA:61275
xref: ncithesaurus:Helicotrema
xref: SCTID:279775003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000161 {source="FMA"} ! orifice
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth

[Term]
id: UBERON:0008814
name: pharyngeal system
namespace: uberon
def: "A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph]
synonym: "pharyngeal apparatus" EXACT []
synonym: "pharyngeal arch region" EXACT [EHDAA2:0000187]
synonym: "pharyngeal arches and clefts" RELATED []
xref: EHDAA2:0000187
xref: ncithesaurus:Pharyngeal_Apparatus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure

[Term]
id: UBERON:0008816
name: embryonic head
namespace: uberon
xref: FBbt:00000155
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000033 ! head
is_a: UBERON:0002050 ! embryonic structure
intersection_of: UBERON:0000033 ! head
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0008818
name: superior mediastinum
namespace: uberon
def: "The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind." [Wikipedia:Superior_mediastinum]
synonym: "superior mediastinal part of chest" EXACT [FMA:9827]
xref: FMA:9827
xref: ncithesaurus:Superior_Mediastinum
xref: SCTID:362687003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum

[Term]
id: UBERON:0008828
name: presphenoid bone
namespace: uberon
def: "The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [http://www.thefreedictionary.com/Presphenoid+bone, Wikipedia:Ossification_of_sphenoid#Presphenoid]
comment: todo - account for developmental change
synonym: "presphenoidal bone" EXACT [SCTID:95949009]
xref: MA:0001470
xref: SCTID:95949009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 {source="MA"} ! chondrocranium bone
relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone

[Term]
id: UBERON:0008831
name: inner spiral sulcus
namespace: uberon
def: "a concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html]
comment: part_of spiral sulcus in MA
synonym: "internal spiral sulcus" EXACT [MA:0001197]
synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html]
xref: FMA:77850
xref: MA:0001197
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus

[Term]
id: UBERON:0008832
name: outer spiral sulcus
namespace: uberon
def: "a concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html]
comment: part_of spiral sulcus in MA
synonym: "external spiral sulcus" EXACT [MA:0001196]
synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html]
xref: FMA:77851
xref: MA:0001196
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus

[Term]
id: UBERON:0008835
name: hepatic diverticulum
namespace: uberon
def: "The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." [http://www.stembook.org/node/512, Wikipedia:Hepatic_diverticulum]
synonym: "liver diverticulum" EXACT [XAO:0000101]
xref: AAO:0011057
xref: EHDAA2:0000740
xref: EHDAA:1530
xref: ncithesaurus:Hepatic_Diverticulum
xref: XAO:0000101
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
is_a: UBERON:0009497 ! epithelium of foregut-midgut junction
is_a: UBERON:0009854 ! digestive tract diverticulum
relationship: develops_from UBERON:0003894 {source="EHDAA2"} ! liver primordium
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006235 {source="EHDAA2"} ! foregut-midgut junction

[Term]
id: UBERON:0008836
name: liver bud
namespace: uberon
xref: BTO:0001642
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0008835 {source="http://www.stembook.org/node/512"} ! hepatic diverticulum

[Term]
id: UBERON:0008837
name: palmar/plantar part of autopod
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002470 ! autopod region

[Term]
id: UBERON:0008845
name: nonskeletal ligament
namespace: uberon
def: "Ligament organ that primarily consists of dense connective tissue aggregated into fasciculi which may be admixed with smooth muscle. Examples: ligament of liver, ovarian ligament." [FMA:25625]
xref: FMA:25625
xref: MA:0003004
xref: SCTID:410746001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000211 {source="FMA"} ! ligament
disjoint_from: UBERON:0008846 ! skeletal ligament

[Term]
id: UBERON:0008846
name: skeletal ligament
namespace: uberon
def: "Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament." [FMA:25624]
synonym: "articular larua" EXACT [Wikipedia:Ligament]
synonym: "articular ligament" EXACT [Wikipedia:Ligament]
synonym: "fibrous ligament" RELATED [Wikipedia:Ligament]
synonym: "ligament" BROAD [VAO:0000072, ZFA:0001675]
synonym: "true ligament" EXACT [Wikipedia:Ligament]
xref: AAO:0010444
xref: AEO:0000090
xref: EHDAA2:0003232
xref: EV:0100144
xref: FMA:25624
xref: GAID:118
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png
xref: MA:0003005
xref: MESH:A.02.513
xref: SCTID:410744003
xref: TAO:0001682
xref: VAO:0000072
xref: ZFA:0001675
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000211 {source="FMA"} ! ligament
intersection_of: UBERON:0000211 ! ligament
intersection_of: part_of UBERON:0001434 ! skeletal system
relationship: part_of UBERON:0001434 ! skeletal system

[Term]
id: UBERON:0008854
name: root of molar tooth
namespace: uberon
def: "the part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165]
synonym: "molar root" EXACT [FMA:85302]
synonym: "molar tooth root" EXACT [FMA:85302]
xref: FMA:85302
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003677 {source="FMA"} ! tooth root
intersection_of: UBERON:0003677 ! tooth root
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0003655 ! molar tooth

[Term]
id: UBERON:0008856
name: stomach muscularis externa
namespace: uberon
def: "the smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines" [MP:0010779]
comment: todo - logical def
synonym: "gastric muscularis" EXACT [FMA:14909]
synonym: "muscularis externa of stomach" EXACT [FMA:14909]
synonym: "tunica muscularis (gaster)" EXACT [FMA:14909]
xref: FMA:14909
xref: SCTID:362132003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 {source="MP"} ! smooth muscle tissue
is_a: UBERON:0004222 ! stomach smooth muscle
is_a: UBERON:0006660 ! muscle layer
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0001167 ! wall of stomach
relationship: part_of UBERON:0001167 {source="FMA"} ! wall of stomach

[Term]
id: UBERON:0008857
name: stomach smooth muscle circular layer
namespace: uberon
def: "the middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum" [MP:0010780]
comment: todo - check
synonym: "circular layer of gastric muscularis" EXACT [FMA:14911]
synonym: "stratum circulare (tunica muscularis)(gaster)" EXACT [FMA:14911]
xref: FMA:14911
xref: MA:0001628
xref: SCTID:2746007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 {source="MP"} ! smooth muscle tissue
is_a: UBERON:0004222 ! stomach smooth muscle
relationship: part_of UBERON:0008856 ! stomach muscularis externa

[Term]
id: UBERON:0008858
name: pyloric canal
namespace: uberon
def: "the short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter" [MP:0010791, Wikipedia:Pyloric_canal]
synonym: "canalis pyloricus" EXACT [Wikipedia:Pyloric_canal]
xref: FMA:14580
xref: SCTID:245417002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
relationship: continuous_with UBERON:0001165 ! pyloric antrum
relationship: continuous_with UBERON:0001202 ! pyloric sphincter
relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus

[Term]
id: UBERON:0008859
name: cardiac gastric gland
namespace: uberon
def: "the gastric glands in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it" [MP:0010795]
comment: Consistency note: Kardong places this in the glandular epithelium, FMA in the mucosa
subset: organ_slim
synonym: "gardiac gland" EXACT [ISBN10:0073040584]
synonym: "gastric gland of cardia" EXACT [FMA:14920]
synonym: "glandula cardiaca (gaster)" EXACT [FMA:14920]
xref: FMA:14920
xref: SCTID:8894005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000325 ! gastric gland
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0004996 {source="FMA"} ! mucosa of cardia of stomach

[Term]
id: UBERON:0008861
name: pyloric gastric gland
namespace: uberon
def: "the gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [MP:0010797, Wikipedia:Pyloric_gland]
comment: Editors note: check relationship to pylorus vs antrum
synonym: "pyloric antrum gland" EXACT [OBOL:automatic]
synonym: "pyloric gland" EXACT [FMA:14922]
xref: FMA:14922
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png
xref: ncithesaurus:Pyloric_Gland
xref: SCTID:70710007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000325 ! gastric gland
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0004998 ! mucosa of pylorus

[Term]
id: UBERON:0008862
name: stomach smooth muscle inner oblique layer
namespace: uberon
def: "the innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food" [MP:0010804]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0008856 ! stomach muscularis externa

[Term]
id: UBERON:0008863
name: stomach smooth muscle outer longitudinal layer
namespace: uberon
def: "the most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum" [MP:0010805]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0008856 ! stomach muscularis externa

[Term]
id: UBERON:0008867
name: trabecular network of bone
namespace: uberon
def: "the network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force" [MP:0010867]
comment: Editor note: consider revision - we have 3 classes, the tissue itself, the network, and the spaces.
synonym: "bone trabecula" RELATED [MP:0010867]
synonym: "bone trabeculae" RELATED [MP:0010867]
xref: MP:0010867
xref: ncithesaurus:Bone_Trabeculae
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
relationship: part_of UBERON:0002483 {source="MP"} ! trabecular bone tissue

[Term]
id: UBERON:0008874
name: pulmonary acinus
namespace: uberon
def: "the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs]
synonym: "primary pulmonary lobule" EXACT [FMA:7313]
xref: FMA:7313
xref: ncithesaurus:Pulmonary_Acinus
xref: SCTID:361365004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule
relationship: part_of UBERON:0002048 ! lung

[Term]
id: UBERON:0008876
name: hypodermis muscle layer
namespace: uberon
def: "the skeletal muscle layer in the superficial fascia" [MP:0011157]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0002190 {source="MP"} ! subcutaneous adipose tissue

[Term]
id: UBERON:0008879
name: ligament of pinna
namespace: uberon
comment: subclasses (anterior, superior, posterior) can be added on request
synonym: "auricular ligament" EXACT [MA:0001228]
synonym: "ligament of auricle" EXACT [FMA:61035]
synonym: "pinna ligament" EXACT [FMA:61035]
xref: FMA:61035
xref: MA:0001228
xref: SCTID:362548009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament
relationship: part_of UBERON:0001757 {source="MA"} ! pinna

[Term]
id: UBERON:0008883
name: osteoid
namespace: uberon
def: "Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue[VAO]. Unmineralized, organic portion of the bone matrix that forms prior to the maturation of bone tissue. Osteoblasts begin the process of forming bone tissue by secreting the osteoid as several specific proteins. When the osteoid becomes mineralized, it and the adjacent bone cells have developed into new bone tissue[WP]" [VAO:0000046, Wikipedia:Osteoid]
comment: AO notes: request from GO?
synonym: "pre-bone" EXACT [PSPUB:0000170]
synonym: "prebone" EXACT [VAO:curator]
synonym: "prebone tissue" EXACT [FMA:66830]
xref: FMA:66830
xref: ncithesaurus:Osteoid
xref: SCTID:39365008
xref: VAO:0000046
xref: XAO:0004035
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004755 ! skeletal tissue
relationship: part_of UBERON:0002481 ! bone tissue

[Term]
id: UBERON:0008886
name: pulmonary vascular system
namespace: uberon
def: "Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation]
synonym: "pulmonary circulatory system" EXACT [FMA:45621]
xref: FMA:45621
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007798 {source="Obol"} ! vascular system
relationship: part_of UBERON:0004535 {source="FMA"} ! cardiovascular system

[Term]
id: UBERON:0008895
name: pharyngeal arch skeleton
namespace: uberon
comment: merge with viscerocranium?
synonym: "branchial arch skeleton" RELATED []
synonym: "gill arch skeleton" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0002539 ! pharyngeal arch
relationship: subdivision_of UBERON:0002539 ! pharyngeal arch

[Term]
id: UBERON:0008896
name: pharyngeal arch 3-7
namespace: uberon
synonym: "branchial arch" EXACT [ZFA:0001613]
synonym: "branchial arches" EXACT PLURAL [ZFA:0001613]
synonym: "branchial bar" EXACT [ZFA:0001613]
synonym: "branchial bars" EXACT PLURAL [ZFA:0001613]
synonym: "gill arch" EXACT [ZFA:0001613]
synonym: "gill arches 1-5" EXACT [ZFA:0001613]
synonym: "visceral arches 3-7" EXACT [ZFA:0001613]
xref: AAO:0010362
xref: SCTID:308766004
xref: TAO:0001597
xref: XAO:0000099
xref: ZFA:0001613
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002539 {source="ZFA"} ! pharyngeal arch
is_a: UBERON:0004185 ! endodermal gut
relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx

[Term]
id: UBERON:0008897
name: fin
namespace: uberon
def: "An external membranous process of an aquatic animal as a fish used in propelling or guiding the body." [BTO:0004649, Wikipedia:Fin]
xref: AAO:0010374
xref: BTO:0004649
xref: EFO:0000875
xref: MAT:0000087
xref: MESH:A13.077
xref: MIAA:0000087
xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA
xref: SCTID:73003005
xref: TAO:0000108
xref: VAO:0000099
xref: XAO:0000002
xref: ZFA:0000108
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003102 ! surface structure

[Term]
id: UBERON:0008907
name: dermal bone
namespace: uberon
def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VAO:0000130, VAO:curator]
comment: todo
xref: AAO:0010769
xref: TAO:0001590
xref: VAO:0000130
xref: XAO:0004015
xref: ZFA:0001590
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 {source="ZFA"} ! intramembranous bone
is_a: UBERON:0007842 {source="VAO"} ! membrane bone

[Term]
id: UBERON:0008909
name: perichordal bone tissue
namespace: uberon
def: "Replacement bone that forms within the connective tissue surrounding the notochord." [ZFIN:curator]
comment: Editor notes: Requires attenting - highly inconsistent in ZFA, TAO and VAO
synonym: "perichordal bone" RELATED [ZFA:0001629]
synonym: "perichordal bones" EXACT PLURAL [ZFA:0001629]
xref: AAO:0010777
xref: TAO:0001639
xref: ZFA:0001629
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004763 {source="ZFA"} ! endochondral bone tissue

[Term]
id: UBERON:0008911
name: chondral bone tissue
namespace: uberon
def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [zfin:curator]
comment: renamed to perichordal bone tissue
synonym: "chondral bone" RELATED [ZFA:0001693]
xref: AAO:0010774
xref: ZFA:0001693
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004763 {source="ZFA"} ! endochondral bone tissue

[Term]
id: UBERON:0008913
name: perichondral bone tissue
namespace: uberon
def: "Replacement bone that forms within the connective tissue surrounding cartilage." [ZFIN:curator]
synonym: "perichondral bone" RELATED [ZFA:0001630]
synonym: "perichondral bones" EXACT PLURAL [ZFA:0001630]
xref: AAO:0010779
xref: TAO:0001638
xref: ZFA:0001630
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008911 {source="ZFA"} ! chondral bone tissue
relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium

[Term]
id: UBERON:0008947
name: respiratory primordium
namespace: uberon
xref: EHDAA2:0004069
xref: ncithesaurus:Respiratory_Primordium
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 {source="Obol"} ! primordium
relationship: part_of UBERON:0003258 ! endoderm of foregut

[Term]
id: UBERON:0008956
name: involucrum
namespace: uberon
def: "a layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum." [Wikipedia:Involucrum]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone

[Term]
id: UBERON:0008957
name: sequestrum
namespace: uberon
def: "a piece of dead bone that has become separated during the process of necrosis from normal/sound bone.." [Wikipedia:Sequestrum]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone

[Term]
id: UBERON:0008958
name: cetacean involucrum
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone

[Term]
id: UBERON:0008959
name: auditory bulla
namespace: uberon
def: "a hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla]
comment: In extant primates, the structure is found in tarsiers, lemurs, and lorises
synonym: "tympanic bulla" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001690 ! ear

[Term]
id: UBERON:0008962
name: forelimb bone
namespace: uberon
def: "A bone that is part of a forelimb region. Examples: any hand phalanx, humerus. Counter-examples: scapula (it is part of the pectoral girdle)" [UBERON:cjm]
synonym: "free forelimb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
synonym: "wing bone" NARROW SENSU [Geisha:syn]
xref: GAID:178
xref: MESH:A.02.835.232.087
xref: ncithesaurus:Bone_of_the_Upper_Extremity
xref: SCTID:368532003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002428 ! limb bone
is_a: UBERON:0010741 ! bone of pectoral complex
intersection_of: UBERON:0002428 ! limb bone
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: develops_from UBERON:0010883 ! forelimb bone cartilaginous condensation
relationship: part_of UBERON:0001440 ! forelimb skeleton
relationship: part_of UBERON:0002102 ! forelimb

[Term]
id: UBERON:0008977
name: pes anserinus
namespace: uberon
def: "The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia." [Wikipedia:Pes_anserinus_%28leg%29]
synonym: "pes anserine" RELATED [Wikipedia:Pes_anserinus_%28leg%29]
xref: BTO:0001507
xref: SCTID:360767004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 {source="BTO"} ! muscle organ
relationship: part_of UBERON:0000043 {source="BTO"} ! tendon

[Term]
id: UBERON:0009000
name: ischial spine
namespace: uberon
def: "A bony process projecting backward and medialward from the posterior border of the ischium." [BTO:0004149]
xref: BTO:0004149
xref: FMA:17028
xref: SCTID:18074002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001130 {source="BTO"} ! vertebral column

[Term]
id: UBERON:0009005
name: femorotibial joint
namespace: uberon
def: "One of the two primary bendings of a typical leg, pertains to the femur and the tibia." [BTO:0004396]
xref: BTO:0004396
xref: SCTID:182203004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0004174 ! leg joint
relationship: part_of UBERON:0000978 {source="BTO"} ! leg

[Term]
id: UBERON:0009013
name: white fibrocartilage
namespace: uberon
xref: MA:0000486
xref: SCTID:3008003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001995 {source="UBERON"} ! fibrocartilage

[Term]
id: UBERON:0009034
name: stomach region
namespace: uberon
xref: MA:0002561
xref: SCTID:245415005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000064 ! organ part
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach

[Term]
id: UBERON:0009074
name: syrinx organ
namespace: uberon
def: "vocal organ of birds, located at the base of a trachea" [Wikipedia:Syrinx_(bird_anatomy)]
subset: organ_slim
synonym: "avian vocal organ" RELATED []
synonym: "syrinx" RELATED []
xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Syrinx.jpg
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0003126 ! trachea

[Term]
id: UBERON:0009078
name: pessulus
namespace: uberon
def: "A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds" [http://www.encyclo.co.uk/webster/P/64]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
is_a: UBERON:0007844 ! cartilaginous element
relationship: part_of UBERON:0009074 ! syrinx organ

[Term]
id: UBERON:0009101
name: ammocoete
namespace: uberon
def: "lamprey at larval stage" []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002548 ! larva

[Term]
id: UBERON:0009116
name: thymoid
namespace: uberon
def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [PMID:21293377]
comment: Genes: FOXN1
subset: organ_slim
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002368 ! endocrine gland
is_a: UBERON:0003295 ! pharyngeal gland
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
is_a: UBERON:0005058 ! hemolymphoid system gland
is_a: UBERON:0006925 ! digestive gland
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
relationship: part_of UBERON:0009101 ! ammocoete
relationship: part_of UBERON:0009119 ! branchial basket

[Term]
id: UBERON:0009117
name: indifferent gonad
namespace: uberon
def: "A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981]
comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321]
subset: organ_slim
xref: EHDAA2:0000716
xref: ncithesaurus:Indifferent_Gonad
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000991 ! gonad
relationship: part_of UBERON:0009196 ! indifferent external genitalia

[Term]
id: UBERON:0009119
name: branchial basket
namespace: uberon
def: "the network-like cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali" [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm]
subset: cyclostome_subset
synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm]
xref: http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="PMID:19924811"} ! neural crest
relationship: has_part UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0001042 ! chordate pharynx

[Term]
id: UBERON:0009123
name: otic cup
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003069 {source="NBK53175"} ! otic placode

[Term]
id: UBERON:0009132
name: peroneus
namespace: uberon
def: "a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals" [Wikipedia:Fibularis_muscles]
synonym: "fibularis" EXACT []
synonym: "fibularis muscle" EXACT []
synonym: "peroneal muscle" EXACT []
synonym: "peroneal muscle group" EXACT []
synonym: "peroneal muscles" EXACT []
xref: EHDAA2:0001450
xref: EHDAA:8297
xref: SCTID:181694005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001383 ! muscle of leg
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0003823 {source="EHDAA2"} ! hindlimb zeugopod

[Term]
id: UBERON:0009142
name: entire mesenchyme
namespace: uberon
alt_id: UBERON:0003313
comment: consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)
xref: EHDAA2:0001113
xref: EHDAA:177
xref: EMAPA:16097
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
relationship: has_developmental_contribution_from UBERON:0000926 {source="EHDAA2"} ! mesoderm

[Term]
id: UBERON:0009143
name: esophageal region
namespace: uberon
synonym: "oesophageal region" EXACT [RETIRED_EHDAA2:0000654]
xref: EMAPA:16700
xref: RETIRED_EHDAA2:0000654
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut

[Term]
id: UBERON:0009145
name: pharyngeal region
namespace: uberon
xref: EMAPA:16549
xref: RETIRED_EHDAA2:0001454
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut
relationship: part_of UBERON:0001557 {source="EHDAA2"} ! upper respiratory tract

[Term]
id: UBERON:0009191
name: sphenoid bone pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0003446
xref: EMAPA:18015
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: part_of UBERON:0001703 {source="EHDAA2"} ! neurocranium
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium

[Term]
id: UBERON:0009192
name: basisphenoid pre-cartilage condensation
namespace: uberon
synonym: "basi-sphenoid pre-cartilage condensation" EXACT [EHDAA2:0003447]
xref: EHDAA2:0003447
xref: EMAPA:18013
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
is_a: UBERON:0006904 ! head mesenchyme from mesoderm
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium

[Term]
id: UBERON:0009193
name: sphenoid bone cartilage condensation
namespace: uberon
xref: EHDAA2:0001888
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium

[Term]
id: UBERON:0009194
name: basisphenoid cartilage condenstion
namespace: uberon
xref: EHDAA2:0000166
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0009192 {source="EHDAA2"} ! basisphenoid pre-cartilage condensation
relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid bone cartilage condensation

[Term]
id: UBERON:0009196
name: indifferent external genitalia
namespace: uberon
subset: organ_slim
xref: EHDAA2:0004021
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004176 {source="cjm"} ! external reproductive organ

[Term]
id: UBERON:0009197
name: basioccipital pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000165
xref: EHDAA:6033
xref: EMAPA:18012
xref: VHOG:0000959
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_into UBERON:0001692 {source="EHDAA2"} ! basioccipital bone
relationship: part_of UBERON:0002241 {source="EMAPA"} ! chondrocranium

[Term]
id: UBERON:0009198
name: craniofacial suture
namespace: uberon
def: "any suture between cranial and/or facial bones." [GO:0097094]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 {source="FMA-inferred"} ! skeletal joint

[Term]
id: UBERON:0009199
name: facial suture
namespace: uberon
def: "any suture between facial bones." [GO:0097096]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009198 {source="GO"} ! craniofacial suture

[Term]
id: UBERON:0009201
name: nephric duct
namespace: uberon
def: "A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
comment: pronephric duct or mesonephric duct
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0004819 ! kidney epithelium
is_a: UBERON:0006553 ! renal duct
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0002113 ! kidney

[Term]
id: UBERON:0009203
name: nasal suture
namespace: uberon
def: "a suture joining the nasal bones." [Wikipedia:Internasal_suture]
comment: SNOMED has different terms for nasal and internasal
synonym: "internasal suture" EXACT [FMA:52959, GO:0097097]
synonym: "internasal suture of skull" EXACT [FMA:52959]
synonym: "nasal suture of skull" EXACT [SCTID:368992007]
synonym: "sutura internasalis" EXACT [Wikipedia:Internasal_suture]
xref: FMA:52959
xref: SCTID:368990004
xref: SCTID:368992007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009199 {source="GO"} ! facial suture
relationship: adjacent_to UBERON:0001681 ! nasal bone

[Term]
id: UBERON:0009207
name: geschmacksstreifen
namespace: uberon
def: "Area between hard and soft palates rich in tastebuds." [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0009210
name: pharyngeal membrane
namespace: uberon
def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html]
synonym: "pharyngeal membrane" EXACT []
xref: ncithesaurus:Pharyngeal_Membrane
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
relationship: has_part UBERON:0000924 ! ectoderm
relationship: has_part UBERON:0000925 ! endoderm
relationship: overlaps UBERON:0004117 ! pharyngeal pouch
relationship: overlaps UBERON:0005879 ! pharyngeal cleft

[Term]
id: UBERON:0009213
name: pharyngeal membrane of 1st arch
namespace: uberon
def: "separates the first pharyngeal groove from the first pharyngeal pouch." [ISBN10:1416037055]
comment: check EMAPA - 3 terms appear to match. We follow EMAPA in making each membrane part of the arch with the same number, though in fact it is between these arches
synonym: "1st branchial membrane" EXACT [EMAPA:16992]
synonym: "1st pharyngeal membrane" EXACT [VHOG:0001427]
synonym: "future tympanic membrane" EXACT [EMAPA:17281]
synonym: "tympanic membrane primordium" EXACT [ISBN10:1416037055]
xref: EHDAA:3788
xref: EMAPA:16121
xref: EMAPA:16992
xref: EMAPA:17281
xref: VHOG:0001427
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009210 ! pharyngeal membrane
relationship: overlaps UBERON:0005872 ! 1st arch pharyngeal cleft
relationship: overlaps UBERON:0007122 ! pharyngeal pouch 1
relationship: part_of UBERON:0004362 {source="EMAPA"} ! mandibular arch

[Term]
id: UBERON:0009291
name: cartilaginous centrum of vertebra
namespace: uberon
comment: cartilaginous centrum of vertebra[PMID:11746457]
xref: SCTID:317278007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001075 ! body of vertebra
is_a: UBERON:0007844 ! cartilaginous element

[Term]
id: UBERON:0009292
name: embryonic nasal process
namespace: uberon
xref: EHDAA:4776
xref: EMAPA:16680
xref: SCTID:308881001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0009468
name: basiotic bone
namespace: uberon
def: "a small bone in the fetus between the basilar process and the basisphenoid." [http://medical-dictionary.thefreedictionary.com/basiotic+bone]
xref: SCTID:95946002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922 ! embryo

[Term]
id: UBERON:0009470
name: postsphenoidal bone
namespace: uberon
def: "the posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae." [http://www.merriam-webster.com/dictionary/postsphenoid, Wikipedia:Ossification_of_sphenoid#Postsphenoid]
xref: SCTID:95950009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 {source="cjm"} ! chondrocranium bone
relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone

[Term]
id: UBERON:0009494
name: pharyngeal arch mesenchymal region
namespace: uberon
def: "A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm]
comment: Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262]
synonym: "branchial arch mesenchyme" EXACT [MP:0011262]
synonym: "pharyngeal arch mesenchyme" EXACT [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002539 ! pharyngeal arch
relationship: has_developmental_contribution_from UBERON:0003099 {source="cjm"} ! cranial neural crest
relationship: part_of UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme

[Term]
id: UBERON:0009497
name: epithelium of foregut-midgut junction
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000573
xref: EMAPA:16564
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0003929 ! gut epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006235 ! foregut-midgut junction
relationship: part_of UBERON:0006235 ! foregut-midgut junction

[Term]
id: UBERON:0009503
name: associated mesenchyme of hindgut
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000780
xref: EMAPA:16716
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001046 ! hindgut

[Term]
id: UBERON:0009505
name: associated mesenchyme of trachea
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0002067
xref: EMAPA:16854
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea

[Term]
id: UBERON:0009506
name: associated mesenchyme of middle ear
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0001182
xref: EMAPA:17001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001756 ! middle ear
relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0009523
name: mesenchyme of handplate
namespace: uberon
subset: emapa_ehdaa2
synonym: "hand plate mesenchyme" EXACT []
synonym: "handplate mesenchyme" EXACT [EHDAA2:0000731]
xref: EHDAA2:0000731
xref: EMAPA:17248
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006875 ! handplate
relationship: develops_from UBERON:0003413 {source="EHDAA2"} ! forelimb/pectoral fin bud mesenchyme
relationship: part_of UBERON:0006875 ! handplate

[Term]
id: UBERON:0009551
name: distal segment of digit
namespace: uberon
def: "A segment of a digit containing the distal phalanx, and overlapping the interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [doi:10.1038/nature10346]
comment: Newborn and adult mice are able to regrow forelimb (finger) and hindlimb (toe) digit tips after their amputation through the distal interphalangeal joint. Regeneration of the digit tip involves the integrated regrowth of multiple tissues within 2–3 months, reaching an external morphology that is cosmetically and functionally similar to normal digits. Most importantly, regeneration of the mouse distal digit shares morphological similarities with clinical cases documenting regrowth of missing distal portions of fingers in both children and adults
synonym: "digit tip" EXACT [UBERON:cjm]
synonym: "distal digit segment" EXACT [UBERON:cjm]
synonym: "tip of digit" EXACT [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: overlaps UBERON:0006658 {source="cjm"} ! inter-phalangeal joint
relationship: part_of UBERON:0002544 ! digit

[Term]
id: UBERON:0009552
name: distal segment of hand digit
namespace: uberon
alt_id: UBERON:0004093
def: "." [HP:0001211]
comment: in SNOMED this is a surface region. Here we intend it to be the entire distal segment
synonym: "finger digit tip" EXACT [doi:10.1038/nature10346]
synonym: "finger distal segment" EXACT [UBERON:cjm]
synonym: "finger tip" EXACT [UBERON:cjm]
synonym: "fingertip" EXACT [HP:0001211]
synonym: "forelimb digit tip" EXACT [doi:10.1038/nature10346]
synonym: "tip of finger" EXACT [SCTID:312543003]
xref: OpenCyc:Mx4rvVjpf5wpEbGdrcN5Y29ycA
xref: SCTID:312543003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005451 ! segment of hand
is_a: UBERON:0009551 ! distal segment of digit
intersection_of: UBERON:0009551 ! distal segment of digit
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit

[Term]
id: UBERON:0009553
name: distal segment of foot digit
namespace: uberon
synonym: "hindlimb digit tip" EXACT [doi:10.1038/nature10346]
synonym: "tip of toe" EXACT [UBERON:cjm]
synonym: "toe digit tip" EXACT [doi:10.1038/nature10346]
synonym: "toe distal segment" EXACT [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005445 ! segment of foot
is_a: UBERON:0009551 ! distal segment of digit
intersection_of: UBERON:0009551 ! distal segment of digit
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit

[Term]
id: UBERON:0009554
name: coffin bone
namespace: uberon
def: "the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint " [Wikipedia:Coffin_bone]
synonym: "equine distal phalanx" EXACT [UBERON:cjm]
synonym: "pedal bone" EXACT [Wikipedia:Coffin_bone, Wikipedia:Equine_forelimb_anatomy#Distal_phalanx]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004300 ! distal phalanx

[Term]
id: UBERON:0009555
name: short pastern bone
namespace: uberon
def: "." [Wikipedia:Equine_forelimb_anatomy#Middle_phalanx]
synonym: "equine middle phalanx" EXACT [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004301 ! middle phalanx
is_a: UBERON:0009558 ! pastern bone

[Term]
id: UBERON:0009556
name: long pastern bone
namespace: uberon
def: "." [Wikipedia:Equine_forelimb_anatomy#Proximal_phalanx]
synonym: "equine proximal phalanx" EXACT [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004302 ! proximal phalanx
is_a: UBERON:0009558 ! pastern bone

[Term]
id: UBERON:0009557
name: coffin joint
namespace: uberon
synonym: "equine distal interphalangeal joint" EXACT [UBERON:cjm]
xref: SCTID:196392002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006658 ! inter-phalangeal joint

[Term]
id: UBERON:0009558
name: pastern bone
namespace: uberon
def: "A bone that is part of the pastern region of a horse limb." [Wikipedia:Pastern]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003221 ! phalanx
relationship: part_of UBERON:0009563 ! pastern region of limb

[Term]
id: UBERON:0009559
name: metacarpal/tarsal-phalangeal joint
namespace: uberon
synonym: "fetlock" NARROW SENSU [UBERON:cjm, Wikipedia:Fetlock]
synonym: "metacarpo-tarsophalangeal joint" EXACT [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003841 ! autopod joint
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: attached_to UBERON:0003656 ! mesopodium bone
intersection_of: part_of UBERON:0002544 ! digit
relationship: attached_to UBERON:0003656 ! mesopodium bone
relationship: part_of UBERON:0002544 ! digit

[Term]
id: UBERON:0009563
name: pastern region of limb
namespace: uberon
def: "a part of the leg of a horse between the fetlock and the top of the hoof. It incorporates the long pastern bone (proximal phalanx) and the short pastern bone (middle phalanx), which are held together by two sets of paired ligaments to form the pastern joint (proximal interphalangeal joint)" [Wikipedia:Pastern]
comment: note that digit is used very generically in uberon, to include the homologous region in ungulates. Taxon notes: Anatomically homologous to the two largest bones found in the human finger
xref: SCTID:370725009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002544 ! digit

[Term]
id: UBERON:0009568
name: trunk region of vertebral column
namespace: uberon
def: "A collection of all skeletal elements in the subdivision of the vertebral column that is also part of the trunk." [UBERON:cjm]
synonym: "presacral region" RELATED [AAO:0000612]
synonym: "thoracolumbar region" RELATED [AAO:0000612]
xref: AAO:0000612
xref: ncithesaurus:Thoracolumbar_Region
xref: XAO:0003077
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006077 ! subdivision of vertebral column
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: part_of UBERON:0002100 ! trunk
intersection_of: subdivision_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
relationship: subdivision_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0009569
name: subdivision of trunk
namespace: uberon
synonym: "region of trunk" EXACT [FMA:25054]
synonym: "trunk subdivision" EXACT [FMA:25054]
xref: FMA:25054
xref: SCTID:22943007
xref: XAO:0000054
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk

[Term]
id: UBERON:0009617
name: head paraxial mesoderm
namespace: uberon
def: "Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022]
synonym: "cephalic paraxial mesoderm" EXACT [UBERON:cjm]
synonym: "head paraxial mesenchyme" EXACT [EHDAA2:0000736]
xref: EHDAA2:0000736
xref: EHDAA:364
xref: EMAPA:16171
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm
relationship: part_of UBERON:0003077 ! paraxial mesoderm
relationship: part_of UBERON:0005253 {source="EHDAA2"} ! head mesenchyme

[Term]
id: UBERON:0009618
name: trunk paraxial mesoderm
namespace: uberon
synonym: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094]
synonym: "trunk paraxial mesenchyme" RELATED []
xref: EHDAA2:0002094
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm
relationship: part_of UBERON:0003077 ! paraxial mesoderm
relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme

[Term]
id: UBERON:0009635
name: parachordal cartilage
namespace: uberon
def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [ISBN10:1588903958, UBERON:cjm]
synonym: "parachordal cartilages" EXACT PLURAL [ZFA:0001423]
xref: ncithesaurus:Parachordal_Cartilage
xref: TAO:0001423
xref: ZFA:0001423
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003932 {source="ZFA"} ! chondrocranium cartilage
relationship: overlaps UBERON:0003110 {source="ZFA"} ! otic region
relationship: overlaps UBERON:0005902 {source="ZFA"} ! occipital region

[Term]
id: UBERON:0009636
name: prechordal cartilage
namespace: uberon
def: "Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid." [ISBN10:1588903958, UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003932 {source="ZFA"} ! chondrocranium cartilage

[Term]
id: UBERON:0009637
name: alisphenoid ossification center
namespace: uberon
synonym: "alisphenoid center" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010355 ! ossification center

[Term]
id: UBERON:0009638
name: orbitosphenoid ossification center
namespace: uberon
comment: merge with sphenoid lesser wing cartilage condensation?
synonym: "orbitosphenoid center" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010355 ! ossification center

[Term]
id: UBERON:0009639
name: body of sphenoid
namespace: uberon
def: "The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum." [Wikipedia:Body_of_sphenoid_bone]
synonym: "body of sphenoidal bone" EXACT [FMA:52867]
synonym: "central body of sphenoid" EXACT [FMA:52867]
synonym: "corpus (os sphenoidale)" EXACT [FMA:52867]
synonym: "sphenoid body" EXACT [FMA:52867]
xref: FMA:52867
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
relationship: develops_from UBERON:0009636 {source="ISBN10:1588903958"} ! prechordal cartilage
relationship: develops_from UBERON:0009640 {source="ISBN10:1588903958"} ! hypophyseal cartilage
relationship: part_of UBERON:0001677 {source="FMA"} ! sphenoid bone
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium

[Term]
id: UBERON:0009640
name: hypophyseal cartilage
namespace: uberon
def: "forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone" [ISBN10:1588903958]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007844 ! cartilaginous element

[Term]
id: UBERON:0009647
name: tympanic membrane epithelium
namespace: uberon
def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)" [PMID:11237469, UBERON:cjm]
synonym: "tympanic epithelium" EXACT [MA:0001224]
synonym: "tympanic membrane epithelial layer" EXACT []
xref: MA:0001224
xref: ncithesaurus:Tympanic_Epithelium
xref: SCTID:70839004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0010071 ! layer of tympanic membrane
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002364 ! tympanic membrane
disjoint_from: UBERON:0010070 ! intermediate layer of tympanic membrane
relationship: part_of UBERON:0002364 ! tympanic membrane

[Term]
id: UBERON:0009664
name: gut mesentery
namespace: uberon
xref: EHDAA2:0004566
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001179 {source="EHDAA2"} ! peritoneal cavity

[Term]
id: UBERON:0009678
name: tooth row
namespace: uberon
def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator]
synonym: "row of teeth" EXACT [UBERON:cjm]
synonym: "tooth rows" EXACT PLURAL [ZFA:0001642]
xref: TAO:0001667
xref: ZFA:0001642
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003672 ! dentition

[Term]
id: UBERON:0009679
name: set of lower jaw teeth
namespace: uberon
synonym: "lower jaw teeth" EXACT [EHDAA2:0001029]
xref: EHDAA2:0001029
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009678 ! tooth row
relationship: part_of UBERON:0003278 {source="EHDAA2"} ! skeleton of lower jaw

[Term]
id: UBERON:0009680
name: set of upper jaw teeth
namespace: uberon
synonym: "upper jaw teeth" EXACT [EHDAA2:0002129]
xref: EHDAA2:0002129
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009678 ! tooth row
relationship: part_of UBERON:0003277 {source="EHDAA2"} ! skeleton of upper jaw

[Term]
id: UBERON:0009722
name: entire pharyngeal arch endoderm
namespace: uberon
synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621]
xref: EHDAA2:0004621
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium

[Term]
id: UBERON:0009749
name: limb mesenchyme
namespace: uberon
def: "the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261]
synonym: "limb mesoderm" RELATED [Geisha:syn]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0003285 ! limb of embryo

[Term]
id: UBERON:0009751
name: cardiac mesenchyme
namespace: uberon
def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264]
comment: Editor note: decide whether to merge with cardiac mesoderm. Check start/end stages
xref: EHDAA2:0004162
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart

[Term]
id: UBERON:0009767
name: proximal interphalangeal joint
namespace: uberon
xref: FMA:65022
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006658 ! inter-phalangeal joint

[Term]
id: UBERON:0009768
name: distal interphalangeal joint
namespace: uberon
xref: FMA:65024
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006658 ! inter-phalangeal joint

[Term]
id: UBERON:0009774
name: embryonic midbrain hindbrain boundary
namespace: uberon
comment: merge with presumptive midbrain hindbrain boundary?
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006800 {source="ZFA"} ! anatomical line
relationship: part_of UBERON:0006238 ! future brain

[Term]
id: UBERON:0009779
name: cardiac muscle tissue of right auricle
namespace: uberon
xref: EMAPA:16826
xref: EMAPA:17324
xref: FMA:84280
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region

[Term]
id: UBERON:0009780
name: cardiac muscle tissue of left auricle
namespace: uberon
xref: EMAPA:16818
xref: EMAPA:17318
xref: FMA:84281
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region

[Term]
id: UBERON:0009845
name: urogenital sinus mesenchyme
namespace: uberon
comment: Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth
synonym: "UGM" EXACT [PMID:18977204]
xref: EHDAA2:0004061
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0009503 ! associated mesenchyme of hindgut
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus
relationship: part_of UBERON:0000164 ! primitive urogenital sinus

[Term]
id: UBERON:0009846
name: embryonic cloacal epithelium
namespace: uberon
synonym: "cloacal epithelium" EXACT [EHDAA2:0004585]
xref: EHDAA2:0004585
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0003353 ! epithelium of hindgut
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000163 ! embryonic cloaca
relationship: develops_from UBERON:0003353 {source="EHDAA2"} ! epithelium of hindgut
relationship: part_of UBERON:0000163 ! embryonic cloaca
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium

[Term]
id: UBERON:0009847
name: prostate field
namespace: uberon
def: "a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, PMID:18977204]
synonym: "prostate primordium" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004902 ! urogenital sinus epithelium
is_a: UBERON:0005423 ! developing anatomical structure
relationship: induced_by UBERON:0009845 {source="PMID:18977204"} ! urogenital sinus mesenchyme
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004902 {source="PMID:18977204"} ! urogenital sinus epithelium

[Term]
id: UBERON:0009854
name: digestive tract diverticulum
namespace: uberon
def: "Branch or outpocketing of the digestive tract." [UBERON:cjm]
synonym: "diverticulum of gut" RELATED [FBbt:00100316]
synonym: "intestinal pouch" RELATED []
xref: FBbt:00100316
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004921 ! subdivision of digestive tract
is_a: UBERON:0009856 ! sac
intersection_of: UBERON:0009856 ! sac
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0001555 ! digestive tract

[Term]
id: UBERON:0009856
name: sac
namespace: uberon
synonym: "diverticulum" RELATED []
synonym: "pouch" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure

[Term]
id: UBERON:0009858
name: outer fibrous layer of periosteum
namespace: uberon
synonym: "capsular layer of periosteum" EXACT [FMA:234354]
synonym: "fibrous layer of periosteum" EXACT [FMA:234354]
synonym: "outer fibrous layer of periosteum" EXACT [FMA:234354]
xref: FMA:234354
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum

[Term]
id: UBERON:0009859
name: endosteum
namespace: uberon
def: "a thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones" [Wikipedia:Endosteum]
xref: FMA:32692
xref: ncithesaurus:Endosteum
xref: SCTID:57487002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0001474 ! bone

[Term]
id: UBERON:0009870
name: zone of stomach
namespace: uberon
def: "A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland." [ISBN10:0073040584, Wikipedia:Stomach#Sections]
comment: Editor notes: We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach
synonym: "gastric zone" EXACT [FMA:14558]
synonym: "region of stomach" EXACT []
synonym: "section of stomach" EXACT []
xref: FMA:14558
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Regions_of_stomach.svg/500px-Regions_of_stomach.svg.png
xref: SCTID:245415005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 {source="Obol"} ! stomach

[Term]
id: UBERON:0009877
name: metapodium region
namespace: uberon
def: "Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region" [MA:th, UBERON:cjm]
comment: Naming conventions for pod terms under discussion within phenoscape group
synonym: "metacarpal or metatarsal part of limb" EXACT []
synonym: "metacarpus/metatarsus" RELATED []
synonym: "metacarpus/metatarsus region" EXACT []
synonym: "metapodial segment" EXACT []
synonym: "metapodium" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002470 {source="MA:th"} ! autopod region

[Term]
id: UBERON:0009878
name: mesopodium skeleton
namespace: uberon
def: "The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton" [UBERON:cjm]
comment: Editors note: todo - resolve confusion as to whether mesopod is part of autopod
synonym: "basipodium" RELATED [VAO:0005022, VAO:NI]
synonym: "basipodium skeleton" EXACT [VAO:0005022, VAO:NI]
synonym: "carpal/tarsal skeleton" EXACT []
synonym: "mesopodium" RELATED [VAO:0005022, VAO:NI]
synonym: "mesopodium skeleton" EXACT []
xref: VAO:0005022
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010712 ! limb skeleton subdivision
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0006716 ! mesopodium region
relationship: part_of UBERON:0006716 ! mesopodium region
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: subdivision_of UBERON:0006716 ! mesopodium region

[Term]
id: UBERON:0009879
name: tarsal skeleton
namespace: uberon
def: "Set of endochondral bones of the hindlimb increasing freedom of movement of the  autopodium and located between the  zeugopodium (tibia and fibula) and the  metapodium (metatarsals)." [VAO:0005024, Wikipedia:Tarsus_(skeleton)]
comment: AO notes: we assume MA:tarsus belongs here, as there is a distinct class MA:ankle, with the tarsal bone being part of the former. XAO:tarsus is part of the hindlimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent.
synonym: "basipodium" RELATED [VAO:0005024]
synonym: "hind mesopodium" RELATED []
synonym: "hind mesopodium skeleton" RELATED []
synonym: "mesopodium" RELATED [VAO:0005024]
synonym: "set of tarsal bones" EXACT [FMA:71339]
synonym: "tarsus" RELATED [XAO:0003211]
xref: AAO:0000220
xref: EMAPA:25072
xref: FMA:71339
xref: GAID:1223
xref: MA:0000050
xref: SCTID:264228001
xref: VAO:0005024
xref: VHOG:0001160
xref: XAO:0003211
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009878 ! mesopodium skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0001445 ! skeleton of foot
relationship: part_of UBERON:0004454 ! tarsal region
relationship: subdivision_of UBERON:0004454 ! tarsal region

[Term]
id: UBERON:0009880
name: carpal skeleton
namespace: uberon
def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpus]
comment: AO notes: we assume MA:carpus belongs here, as there is a distinct class MA:wrist, with the carpal bone being part of the former. XAO:carpus is part of the forelimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent. Taxon notes: The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone[14] [Wikipedia:Carpus#Evolutionary_variations]
synonym: "carpal bones" EXACT [EMAPA:25056, FMA:71335]
synonym: "carpal bones set" EXACT [FMA:71335]
synonym: "carpus" RELATED [MA:0000040, XAO:0003207]
synonym: "fore mesopodium" RELATED [AAO:0000201]
synonym: "fore mesopodium skeleton" EXACT []
synonym: "ossa carpi" EXACT []
synonym: "set of carpal bones" RELATED [FMA:71335]
synonym: "skeleton of carpus" EXACT []
xref: AAO:0000201
xref: EMAPA:25056
xref: FMA:71335
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png
xref: MA:0000040
xref: VAO:0005023
xref: VHOG:0001161
xref: XAO:0003207
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009878 ! mesopodium skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0004452 ! carpal region
relationship: subdivision_of UBERON:0004452 ! carpal region

[Term]
id: UBERON:0009881
name: anterior lateral plate mesoderm
namespace: uberon
synonym: "ALPM" EXACT [ZFA:0005041]
xref: TAO:0005041
xref: ZFA:0005041
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 {source="ZFA"} ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm

[Term]
id: UBERON:0009889
name: secondary heart field
namespace: uberon
def: "extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract." [PMID:17276708]
comment: Taxon notes: "In general, the two studies in chick concluded that the contribution of the SHF was to the outflow tract, whereas the mouse work suggested that the second lineage contributed more broadly to the heart, including the outflow tract and much or all of the right ventricle [11–14]. These different conclusions may represent differences in the experimental approaches used or may represent bona fide differences in the contribution of the second lineage to the hearts of birds compared to mammals [11]. Alternatively, the secondary/anterior heart fields described in the chick may represent a subset of a broader field that makes a more substantial contribution to the heart, as the mouse studies suggested" [PMID:17276708]
synonym: "anterior heart field" EXACT [PMID:17276708]
synonym: "anterior/second heart field" EXACT [Geisha:syn]
synonym: "second heart field" EXACT [XAO:0004186]
synonym: "SHF" RELATED [XAO:0004186]
xref: XAO:0004186
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0005291 ! embryonic tissue
relationship: anterior_to UBERON:0004140 {source="PMID:17276708"} ! heart field
relationship: dorsal_to UBERON:0004140 {source="PMID:17276708"} ! heart field
relationship: part_of UBERON:0000926 ! mesoderm

[Term]
id: UBERON:0009891
name: facial mesenchyme
namespace: uberon
synonym: "face mesenchyme" EXACT []
synonym: "mesenchyme of face" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:0009911
name: lobule
namespace: uberon
xref: FMA:45737
xref: ncithesaurus:Lobule
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part

[Term]
id: UBERON:0009916
name: wall of ureter
namespace: uberon
synonym: "ureteral wall" EXACT [FMA:15888]
xref: FMA:15888
xref: SCTID:279397004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter

[Term]
id: UBERON:0009919
name: ureter smooth muscle
namespace: uberon
def: "the smooth muscle tissue surrounding the epithelium of the ureter" [MP:0011426]
synonym: "ureteral smooth muscle" EXACT [NEW_MP:0011426]
synonym: "ureteral smooth muscle layer" EXACT [EMAPA:28844]
xref: EMAPA:28844
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0006855 ! ureter muscle layer

[Term]
id: UBERON:0009920
name: optic neural crest
namespace: uberon
xref: EHDAA2:0001315
xref: EHDAA:1122
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population
relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest

[Term]
id: UBERON:0009955
name: neurogenic placode
namespace: uberon
def: "Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
synonym: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]
xref: TAO:0001309
xref: ZFA:0001309
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002546 {source="cjm"} ! cranial placode

[Term]
id: UBERON:0009960
name: esophagus smooth muscle circular layer
namespace: uberon
synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574]
xref: FMA:67605
xref: MA:0001574
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus
relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle

[Term]
id: UBERON:0009961
name: esophagus smooth muscle longitudinal layer
namespace: uberon
synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575]
synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573]
xref: FMA:63573
xref: MA:0001575
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus
relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle

[Term]
id: UBERON:0009966
name: internodal tract
namespace: uberon
def: "Subdivision of conducting systemof heart which consists of the anterior, middle and  posterior internodal tracts  beneath the endocardium of interatrial septum and above the attachment of the septal leaflet of tricuspid valve." [FMA:9479]
comment: evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial[http://www.cvphysiology.com/Arrhythmias/A003.htm]. Editor note: include 3 subtypes?
synonym: "interatrial conduction tract" EXACT []
synonym: "internodal conduction tract" EXACT []
synonym: "internodal fasciculus" EXACT [FMA:9479]
synonym: "internodal tract muscle tissue" EXACT [FMA:9479]
xref: FMA:9479
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart

[Term]
id: UBERON:0009977
name: natal tooth
namespace: uberon
def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)" [MESH:A.14.254.860.700.500]
synonym: "natal teeth" EXACT PLURAL [GAID:1267]
synonym: "natal tooth" RELATED [GAID:1267]
xref: GAID:1267
xref: MESH:A.14.254.860.700.500
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0007115 {source="GAID"} ! deciduous tooth

[Term]
id: UBERON:0009978
name: epicondyle
namespace: uberon
def: "." [Wikipedia:Epicondyle]
xref: FMA:75435
xref: ncithesaurus:Epicondyle
xref: SCTID:333209006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ

[Term]
id: UBERON:0009979
name: condyle
namespace: uberon
def: "the round prominence at the end of a bone, most often part of a joint - an articulation with another bone[WP]." [Wikipedia:Condyle_(anatomy)]
xref: FMA:75434
xref: ncithesaurus:Condyle
xref: SCTID:91737009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ

[Term]
id: UBERON:0009980
name: condyle of femur
namespace: uberon
synonym: "condylus femoralis" EXACT []
synonym: "condylus femoris" EXACT []
synonym: "femoral condyle" EXACT []
synonym: "fibular condyle" RELATED [AAO:0000900]
xref: AAO:0000900
xref: FMA:32855
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009979 ! condyle
intersection_of: UBERON:0009979 ! condyle
intersection_of: part_of UBERON:0004406 ! distal epiphysis of femur
relationship: part_of UBERON:0004406 ! distal epiphysis of femur

[Term]
id: UBERON:0009984
name: medial condyle of femur
namespace: uberon
def: "The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the \"medial epicondyle\" and can be palpated by running fingers medially from the patella with the knee in flexion." [Wikipedia:Medial_condyle_of_femur]
synonym: "c. medialis femoris" RELATED [Wikipedia:Medial_condyle_of_femur]
synonym: "medial condyle of the femur" RELATED [Wikipedia:Medial_condyle_of_femur]
xref: FMA:32858
xref: SCTID:182056007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009980 ! condyle of femur
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur

[Term]
id: UBERON:0009985
name: lateral condyle of femur
namespace: uberon
def: "The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters" [Wikipedia:Lateral_condyle_of_femur]
synonym: "c. lateralis femoris" RELATED [Wikipedia:Lateral_condyle_of_femur]
synonym: "lateral condyle of the femur" RELATED [Wikipedia:Lateral_condyle_of_femur]
xref: FMA:32859
xref: SCTID:182057003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009980 ! condyle of femur
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur

[Term]
id: UBERON:0009986
name: lateral epicondyle of femur
namespace: uberon
def: "The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle." [Wikipedia:Lateral_epicondyle_of_the_femur]
synonym: "epicondylus lateralis (femur)" EXACT [FMA:32867]
synonym: "lateral femoral epicondyle" RELATED [Wikipedia:Lateral_epicondyle_of_the_femur]
xref: FMA:32867
xref: SCTID:209275007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur
relationship: part_of UBERON:0009985 {source="FMA"} ! lateral condyle of femur

[Term]
id: UBERON:0009987
name: medial epicondyle of femur
namespace: uberon
def: "The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or \"tendinous insertion\", of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius." [Wikipedia:Medial_epicondyle_of_the_femur]
synonym: "epicondylus medialis (femur)" EXACT [FMA:32864]
synonym: "medial femoral epicondyle" RELATED [Wikipedia:Medial_epicondyle_of_the_femur]
xref: FMA:32864
xref: SCTID:209172001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur
relationship: part_of UBERON:0009984 {source="FMA"} ! medial condyle of femur

[Term]
id: UBERON:0009988
name: condyle of humerus
namespace: uberon
def: "the distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae" [http://www.medilexicon.com/medicaldictionary.php?t=19715]
synonym: "condylus humeri" EXACT []
xref: FMA:23377
xref: SCTID:361778001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009979 ! condyle
intersection_of: UBERON:0009979 ! condyle
intersection_of: part_of UBERON:0004404 ! distal epiphysis of humerus
relationship: part_of UBERON:0004404 ! distal epiphysis of humerus

[Term]
id: UBERON:0009989
name: condyle of tibia
namespace: uberon
def: "One of the lateral or medial condyles of the tibia." [Wikipedia:Tibial_condyle]
synonym: "tibial condyle" EXACT [AAO:0000899]
xref: AAO:0000899
xref: SCTID:182062002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009979 ! condyle
intersection_of: UBERON:0009979 ! condyle
intersection_of: part_of UBERON:0008772 ! proximal epiphysis of tibia
relationship: part_of UBERON:0008772 ! proximal epiphysis of tibia

[Term]
id: UBERON:0009990
name: medial condyle of tibia
namespace: uberon
def: "The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]." [Wikipedia:Medial_condyle_of_tibia]
synonym: "condylus medialis (tibia)" EXACT [FMA:35445]
synonym: "medial condyle of the tibia" RELATED [Wikipedia:Medial_condyle_of_tibia]
synonym: "medial tibial condyle" RELATED [Wikipedia:Medial_condyle_of_tibia]
xref: FMA:35445
xref: SCTID:182066004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009989 ! condyle of tibia

[Term]
id: UBERON:0009991
name: lateral condyle of tibia
namespace: uberon
def: "The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]." [Wikipedia:Lateral_condyle_of_tibia]
synonym: "condylus lateralis (tibia)" EXACT [FMA:35448]
xref: FMA:35448
xref: SCTID:182067008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009989 ! condyle of tibia

[Term]
id: UBERON:0010020
name: tubotympanic recess epithelium
namespace: uberon
def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [http://www.biology-online.org/dictionary/Tubotympanic_recess]
xref: EHDAA2:0004115
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from UBERON:0007122 {source="PMID:11237469", source="EHDAA2", source="ISBN10:0073040584"} ! pharyngeal pouch 1
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear

[Term]
id: UBERON:0010023
name: dorsal part of pharyngeal pouch 2
namespace: uberon
comment: Development notes: in humans, persists as the tonsillar fossa - the endodermal lining covers the mesodermal lymphatic tissue to form the palatine tonsil[ISBN10:1607950324]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007123 ! pharyngeal pouch 2

[Term]
id: UBERON:0010039
name: food storage organ
namespace: uberon
def: "An organ of the digestive tract that is capable of retaining and storing food" [UBERON:cjm]
comment: This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates
subset: functional_classification
subset: grouping_class
xref: TADS:0000172
xref: TGMA:0001041
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system

[Term]
id: UBERON:0010042
name: 1st arch mesenchyme
namespace: uberon
synonym: "mesenchyme of 1st arch" EXACT [EMAPA:16128]
xref: EMAPA:16128
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004362 ! mandibular arch
relationship: part_of UBERON:0004362 ! mandibular arch

[Term]
id: UBERON:0010046
name: entire pharyngeal arch associated mesenchyme
namespace: uberon
def: "The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm]
synonym: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550]
synonym: "entire branchial arch associated mesenchyme" EXACT [UBERON:cjm]
synonym: "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459]
xref: EHDAA2:0001459
xref: EMAPA:16550
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: has_developmental_contribution_from UBERON:0003099 {source="cjm"} ! cranial neural crest
relationship: part_of UBERON:0008814 {source="EHDAA2"} ! pharyngeal system

[Term]
id: UBERON:0010054
name: malleus cartilage condensation
namespace: uberon
xref: EMAPA:18229
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation

[Term]
id: UBERON:0010055
name: stapes cartilage condensation
namespace: uberon
comment: TODO - check relationship to Recihert's
xref: EMAPA:18230
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation

[Term]
id: UBERON:0010056
name: future tongue
namespace: uberon
xref: EHDAA2:0000696
xref: EHDAA:2951
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003103 {source="EHDAA2"} ! compound organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
intersection_of: UBERON:0003103 ! compound organ
intersection_of: develops_into UBERON:0001723 ! tongue
relationship: develops_into UBERON:0001723 ! tongue
relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening
relationship: part_of UBERON:0001042 {source="EHDAA"} ! chordate pharynx

[Term]
id: UBERON:0010059
name: hypoglossal cord
namespace: uberon
xref: EHDAA2:0004610
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue

[Term]
id: UBERON:0010062
name: pharyngotympanic tube epithelium
namespace: uberon
synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117]
synonym: "eustachian tube epithelium" EXACT [UBERON:cjm]
xref: EHDAA2:0004117
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0005911 ! endo-epithelium
relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium
relationship: part_of UBERON:0002393 {source="cjm"} ! pharyngotympanic tube

[Term]
id: UBERON:0010063
name: tympanic cavity epithelium
namespace: uberon
xref: EHDAA2:0004116
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear

[Term]
id: UBERON:0010064
name: open anatomical space
namespace: uberon
def: "An anatomical space with at least one opening to another space or the exterior." [AEO:0000221]
xref: EHDAA2:0004616
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000464 {source="EHDAA2"} ! anatomical space

[Term]
id: UBERON:0010065
name: auditory meatus epithelium
namespace: uberon
xref: EHDAA2:0004114
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005872 {source="EHDAA2", source="PMID:16313389"} ! 1st arch pharyngeal cleft
relationship: part_of UBERON:0001691 {source="EHDAA2"} ! external ear

[Term]
id: UBERON:0010066
name: tympanic plate
namespace: uberon
synonym: "pars tympanica (os temporale)" EXACT [FMA:52880]
synonym: "tympanic part of temporal bone" EXACT [FMA:52880]
xref: FMA:52880
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ
relationship: develops_from UBERON:0002218 ! tympanic ring
relationship: part_of UBERON:0001678 ! temporal bone

[Term]
id: UBERON:0010069
name: outer epithelial layer of tympanic membrane
namespace: uberon
def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [PMID:11237469, UBERON:cjm]
synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819]
synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819]
synonym: "outer layer of tympanic membrane" EXACT []
synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [UBERON:cjm]
xref: FMA:56819
xref: SCTID:39725007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009647 ! tympanic membrane epithelium
is_a: UBERON:0010371 ! ecto-epithelium
intersection_of: UBERON:0009647 ! tympanic membrane epithelium
intersection_of: part_of UBERON:0001352 ! external acoustic meatus
relationship: part_of UBERON:0001352 ! external acoustic meatus

[Term]
id: UBERON:0010070
name: intermediate layer of tympanic membrane
namespace: uberon
def: "The intermediate fibrous layer of the tympanic membrane." [https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376, PMID:11237469]
comment: AO notes: check MA
synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830]
synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830]
synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830]
synonym: "intermediate fibrous layer of tympanic membrane" EXACT [FMA:56830]
xref: FMA:56830
xref: MA:0001223
xref: SCTID:44692008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010071 {source="FMA"} ! layer of tympanic membrane

[Term]
id: UBERON:0010071
name: layer of tympanic membrane
namespace: uberon
comment: In mammals, this class groups together the two epithelial layers plus the intermediate fibrous layer
subset: grouping_class
synonym: "tympanic membrane layer" EXACT [FMA:56732]
xref: FMA:56732
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002364 ! tympanic membrane

[Term]
id: UBERON:0010076
name: network of trabecular spaces in bone tissue
namespace: uberon
def: "Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone." [FMA:259332]
synonym: "trabecular network of bone tissue" EXACT [FMA:259332]
xref: FMA:259332
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002553 ! anatomical cavity
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0008867 ! trabecular network of bone
relationship: part_of UBERON:0008867 ! trabecular network of bone

[Term]
id: UBERON:0010081
name: future common hepatic duct
namespace: uberon
xref: EHDAA2:0000595
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003703 ! extrahepatic bile duct
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007497 ! developing epithelial placode
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: develops_into UBERON:0001175 ! common hepatic duct
relationship: develops_from UBERON:0005604 ! hepatic duct extrahepatic part
relationship: develops_into UBERON:0001175 ! common hepatic duct

[Term]
id: UBERON:0010083
name: future dermis
namespace: uberon
xref: EHDAA2:0000598
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0004120 ! mesoderm-derived structure
intersection_of: develops_into UBERON:0002067 ! dermis
relationship: develops_into UBERON:0002067 ! dermis
relationship: part_of UBERON:0002199 ! integument

[Term]
id: UBERON:0010084
name: future diaphragm
namespace: uberon
xref: EHDAA2:0000599
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0001134 ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: develops_into UBERON:0001103 ! diaphragm
relationship: develops_into UBERON:0001103 ! diaphragm
relationship: part_of UBERON:0002323 ! body cavity

[Term]
id: UBERON:0010113
name: future membranous labyrinth
namespace: uberon
xref: EHDAA2:0000899
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_into UBERON:0001849 ! membranous labyrinth
relationship: develops_from UBERON:0005641 ! otocyst epithelium
relationship: develops_into UBERON:0001849 ! membranous labyrinth
relationship: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0004637 ! otic capsule

[Term]
id: UBERON:0010115
name: future dura mater
namespace: uberon
xref: EHDAA2:0004317
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002360 ! meninx
intersection_of: UBERON:0002360 ! meninx
intersection_of: develops_into UBERON:0002363 ! dura mater
relationship: develops_into UBERON:0002363 ! dura mater

[Term]
id: UBERON:0010129
name: femur cartilage condensation
namespace: uberon
comment: TODO - request EHDAA2
synonym: "femoral cartilage condensation" EXACT [EMAPA:17742]
xref: EMAPA:17742
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005254 ! upper leg mesenchyme
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation
relationship: develops_into UBERON:0000981 ! femur
relationship: part_of UBERON:0005254 {source="EMAPA"} ! upper leg mesenchyme

[Term]
id: UBERON:0010130
name: autopod plate
namespace: uberon
def: "the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [http://sourceforge.net/tracker/?func=detail&aid=3519614&group_id=76834&atid=1109502, MP:0004576]
synonym: "limb plate" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0002050 ! embryonic structure
intersection_of: develops_into UBERON:0002470 ! autopod region
relationship: develops_from UBERON:0004347 ! limb bud
relationship: develops_into UBERON:0002470 ! autopod region

[Term]
id: UBERON:0010131
name: conducting tissue of heart
namespace: uberon
synonym: "specialized conducting tissue of heart" EXACT [FMA:83378]
synonym: "specialized muscle tissue of heart" EXACT [FMA:83378]
xref: EHDAA2:0004528
xref: FMA:83378
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001133 {source="FMA"} ! cardiac muscle tissue

[Term]
id: UBERON:0010141
name: primitive sex cord of indifferent gonad
namespace: uberon
comment: Usage notes: note that this represents the indifferent structure.
synonym: "indifferent sex cord" EXACT []
synonym: "primitive sex cords" EXACT [EHDAA2:0004051]
xref: EHDAA2:0004051
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004909 ! epithelium of gonad
is_a: UBERON:0005295 ! sex cord
intersection_of: UBERON:0005295 ! sex cord
intersection_of: part_of UBERON:0009117 ! indifferent gonad
relationship: develops_from UBERON:0005891 {source="EHDAA2"} ! coelomic epithelium
relationship: part_of UBERON:0009117 ! indifferent gonad

[Term]
id: UBERON:0010143
name: seminal vesicle fluid
namespace: uberon
comment: AO notes: in ncit, seminal fluid is a subtype of seminal vesicle secretion
synonym: "secretion of seminal vesicle" EXACT [FMA:62969]
synonym: "seminal fluid" RELATED INCONSISTENT []
synonym: "seminal vesicle secretion" EXACT [FMA:62969]
synonym: "vesicular fluid" BROAD []
xref: FMA:62969
xref: MA:0002526
xref: ncithesaurus:Seminal_Fluid
xref: ncithesaurus:Seminal_Vesicle_Secretion
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006530 {source="FMA"} ! seminal fluid
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: secreted_by UBERON:0000998 ! seminal vesicle
relationship: secreted_by UBERON:0000998 ! seminal vesicle

[Term]
id: UBERON:0010147
name: male accessory sex gland
namespace: uberon
def: "Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male." [BTO:0004798]
xref: BTO:0004798
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005399 {source="BTO"} ! male reproductive gland
relationship: part_of UBERON:0000079 ! male reproductive system

[Term]
id: UBERON:0010155
name: parietomastoid suture
namespace: uberon
def: "the suture between the parietal and the temporal bones" [http://www.thefreedictionary.com/parietomastoid+suture]
synonym: "parietomastoid suture of skull" EXACT [FMA:52947]
xref: FMA:52947
xref: SCTID:136753005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 {source="FMA"} ! cranial suture

[Term]
id: UBERON:0010156
name: sphenofrontal suture
namespace: uberon
def: "The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone." [Wikipedia:Sphenofrontal_suture]
synonym: "frontosphenoid suture" EXACT [FMA:52938]
synonym: "sphenofrontal" RELATED [Wikipedia:Sphenofrontal_suture]
synonym: "sphenofrontal suture of skull" EXACT [FMA:52938]
synonym: "sutura sphenofrontalis" RELATED [Wikipedia:Sphenofrontal_suture]
xref: FMA:52938
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 {source="FMA"} ! cranial suture

[Term]
id: UBERON:0010157
name: sphenoparietal suture
namespace: uberon
def: "The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone." [Wikipedia:Sphenoparietal_suture]
synonym: "sphenoparietal suture of skull" EXACT [FMA:52945]
xref: FMA:52945
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 {source="FMA"} ! cranial suture

[Term]
id: UBERON:0010158
name: sphenozygomatic suture
namespace: uberon
def: "The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone." [Wikipedia:Sphenozygomatic_suture]
synonym: "sphenozygomatica suture of skull" EXACT [FMA:52956]
xref: FMA:52956
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 {source="FMA"} ! cranial suture

[Term]
id: UBERON:0010159
name: occipitomastoid suture
namespace: uberon
def: "The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture." [Wikipedia:Occipitomastoid_suture]
synonym: "occipito-mastoid suture" RELATED [Wikipedia:Occipitomastoid_suture]
synonym: "occipitomastoid suture of skull" EXACT [FMA:52934]
synonym: "sutura occipitomastoidea" RELATED [Wikipedia:Occipitomastoid_suture]
xref: FMA:52934
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003685 {source="FMA"} ! cranial suture

[Term]
id: UBERON:0010188
name: protuberance
namespace: uberon
def: "A roughly circular bulge in a surface." [EHDAA2:0003250]
xref: AEO:0000205
xref: EHDAA2:0003250
xref: FMA:82506
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003102 {source="EHDAA2"} ! surface structure

[Term]
id: UBERON:0010191
name: aortic system
namespace: uberon
xref: EHDAA2:0004512
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000480 {source="EHDAA2"} ! anatomical group

[Term]
id: UBERON:0010207
name: nictitating membrane
namespace: uberon
def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [MESH:A.13.660, Wikipedia:Nictitating_membrane]
comment: Taxon notes: Some reptiles, birds, and sharks have full nictitating membranes; in many mammals, a small, vestigial portion of the membrane remains in the corner of the eye. Some mammals, such as camels, polar bears, seals, and aardvarks, have full nictitating membranes[WP]. Editor notes: We exclude the shark structure for this via a taxon constraint.
synonym: "nictitans" EXACT [http://tolweb.org/Amniota]
synonym: "third eyelid" EXACT [MESH:A.13.660]
xref: http://en.wikipedia.org/wiki/File:Chickenblinking.jpg
xref: MESH:A.13.660
xref: ncithesaurus:Nictitating_Membrane
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001711 ! eyelid
is_a: UBERON:0010305 ! region of conjunctiva
relationship: part_of UBERON:0001811 ! conjunctiva

[Term]
id: UBERON:0010212
name: laryngeal apparatus
namespace: uberon
def: "Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring." [AAO:0000267]
synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904]
xref: AAO:0000267
xref: EHDAA2:0000904
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000467 {source="EHDAA2"} ! anatomical system
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: composed_primarily_of UBERON:0001739 ! laryngeal cartilage
relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx

[Term]
id: UBERON:0010213
name: laryngeal pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010221 {source="EHDAA2-abstracted"} ! laryngeal associated mesenchyme
relationship: part_of UBERON:0010212 {source="EHDAA2-abstracted"} ! laryngeal apparatus

[Term]
id: UBERON:0010214
name: cricoid pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000327
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation

[Term]
id: UBERON:0010215
name: arytenoid swellings
namespace: uberon
def: "paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed" [http://www.medilexicon.com/medicaldictionary.php?t=87317]
comment: AO notes - EHDAA2 and EMAPA appear to be inconsistent
xref: EHDAA2:0000146
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005856 {source="EHDAA2"} ! mesenchymal condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010221 {source="EHDAA2"} ! laryngeal associated mesenchyme
relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus

[Term]
id: UBERON:0010219
name: thyroid pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0004088
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation

[Term]
id: UBERON:0010220
name: arytenoid pre-cartilage condensation
namespace: uberon
synonym: "arytenoid swelling pre-cartilage condensation" EXACT [EMAPA:17387]
xref: EHDAA2:0000144
xref: EMAPA:17387
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation
relationship: develops_from UBERON:0010215 {source="EHDAA2"} ! arytenoid swellings

[Term]
id: UBERON:0010221
name: laryngeal associated mesenchyme
namespace: uberon
xref: EHDAA2:0004085
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch
relationship: has_developmental_contribution_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4
relationship: has_developmental_contribution_from UBERON:0003117 {source="Wikipedia"} ! pharyngeal arch 6
relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx

[Term]
id: UBERON:0010226
name: future cardiac ventricle
namespace: uberon
def: "Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle." [ZFA:0001719]
synonym: "presumptive cardiac ventricle heart tube" EXACT [ZFA:0001719]
synonym: "primordial cardiac ventricle" EXACT [FMA:71006]
synonym: "primordial ventricle" EXACT [FMA:71006]
xref: FMA:71006
xref: TAO:0002231
xref: ZFA:0001719
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube

[Term]
id: UBERON:0010227
name: future cardiac atrium
namespace: uberon
def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFA:0001718]
synonym: "presumptive atrium heart tube" EXACT [ZFA:0001718]
synonym: "primordial atrium" EXACT [FMA:71005]
synonym: "primordial cardiac atrium" EXACT [FMA:71005]
xref: FMA:71005
xref: TAO:0002228
xref: ZFA:0001718
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube

[Term]
id: UBERON:0010230
name: eyeball of camera-type eye
namespace: uberon
def: "The camera-type eye apart from its appendages/adnexa." [Wikipedia:Globe_(human_eye)]
comment: See notes for camera-type eye
synonym: "bulbus oculi" EXACT []
synonym: "eye" RELATED INCONSISTENT []
synonym: "eyeball" EXACT [FMA:12513]
synonym: "globe" RELATED [HP:0100886, MIAA:0000283]
xref: FMA:12513
xref: MIAA:0000283
xref: SCTID:244486005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye

[Term]
id: UBERON:0010234
name: palatopharyngeus
namespace: uberon
def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [Wikipedia:Palatopharyngeus_muscle]
comment: Structure notes: It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae
synonym: "palatopharyngeal muscle" EXACT []
synonym: "palatopharyngeus muscle" EXACT []
synonym: "pharyngopalatinus" RELATED [Wikipedia:Palatopharyngeus_muscle]
synonym: "pharyngopalatinus muscle" EXACT [Wikipedia:Palatopharyngeus_muscle]
xref: FMA:46666
xref: SCTID:244796000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle
is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle

[Term]
id: UBERON:0010235
name: uvular muscle
namespace: uberon
def: "The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]." [Wikipedia:Musculus_uvulae]
synonym: "azygos uvulae" RELATED [Wikipedia:Musculus_uvulae]
synonym: "m. uvulae" RELATED [Wikipedia:Musculus_uvulae]
synonym: "musculus uvulae" RELATED [Wikipedia:Musculus_uvulae]
synonym: "musculus uvulae muscle" RELATED [Wikipedia:Musculus_uvulae]
synonym: "uvulae muscle" RELATED [Wikipedia:Musculus_uvulae]
synonym: "uvular muscle" EXACT [FMA:46733]
xref: FMA:46733
xref: SCTID:244797009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle

[Term]
id: UBERON:0010254
name: 2nd arch mesenchyme from neural crest
namespace: uberon
xref: EHDAA2:0000068
xref: EMAPA:16281
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005689 ! 2nd arch mesenchyme
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0005689 ! 2nd arch mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0003852 {source="EHDAA2-inferred"} ! rhombencephalon neural crest
relationship: part_of UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme
relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest

[Term]
id: UBERON:0010258
name: mesenchyme from rhombencephalic neural crest
namespace: uberon
xref: EHDAA2:0004423
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000480 {source="EHDAA2"} ! anatomical group
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0003852 ! rhombencephalon neural crest
relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest

[Term]
id: UBERON:0010271
name: musculus retractor bulbi
namespace: uberon
def: "Cranial nerve VI innervated; ventral and posterior to the eye." [AAO:0010122]
comment: Editors note: TODO - add innervation relationships
synonym: "M. retractor bulbi" EXACT []
synonym: "retractor bulbi" EXACT []
synonym: "retractor bulbi muscle" EXACT []
xref: AAO:0010122
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001601 {source="cjm"} ! extra-ocular muscle

[Term]
id: UBERON:0010272
name: hyoid apparatus
namespace: uberon
def: "A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage" [http://www.biology-online.org/dictionary/Hyoid_apparatus]
comment: Taxon notes: In most mammals, including humans, the hyoid apparatus is shaped like a horseshoe. However, in humans, some of the bones of the hyoid apparatus are fused into a single bone called os hyoideum. In other animals such as frogs, the hyoid apparatus has a hyoid body that is chiefly comprised of hyaline cartilage and two pairs of processes (i.e. alary process and the posteriolateral process).
synonym: "apparatus hyoideus" RELATED [http://www.biology-online.org/dictionary/Hyoid_apparatus]
synonym: "hyobranchial apparatus" RELATED [AAO:0000225]
synonym: "hyolingual system" RELATED [AAO:0000225]
xref: AAO:0000225
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0001704 ! viscerocranium

[Term]
id: UBERON:0010273
name: zone of hyoid bone
namespace: uberon
synonym: "hyoid bone zone" EXACT [FMA:59494]
xref: FMA:59494
xref: SCTID:119534005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
intersection_of: UBERON:0005913 ! zone of bone organ
intersection_of: part_of UBERON:0001685 ! hyoid bone
relationship: part_of UBERON:0001685 ! hyoid bone

[Term]
id: UBERON:0010276
name: vertebral column opening
namespace: uberon
comment: AO notes: in AAO this is a space rather than conduit
synonym: "vertebral conduit" EXACT []
xref: AAO:0000700
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0004111 ! anatomical conduit
intersection_of: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0002412 ! vertebra

[Term]
id: UBERON:0010289
name: scleral cartilage
namespace: uberon
def: "Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye." [http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage]
comment: Taxon notes: May be calcified in chondrichthyans. Tetrapods without this element (e.g., snakes and mammals) have a collagenous sclera.  May not be homologous - see PMID:17051547. cup-shaped in birds. Present in monotremes. Editor notes: consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage. Editors notes: relationship to sclera - overlaps?
synonym: "scleral cartilaginous cup" NARROW SENSU [PMID:17051547]
synonym: "scleral cartilaginous element" EXACT [PMID:17051547]
synonym: "sclerotic cartilage" EXACT [ZFA:0001509]
xref: TAO:0001509
xref: ZFA:0001509
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0003932 {source="ZFA"} ! chondrocranium cartilage
is_a: UBERON:0010296 ! scleral skeletal element
relationship: develops_from UBERON:0002342 {source="PMID:17051547 - ossicles"} ! neural crest
relationship: part_of UBERON:0001773 {source="cjm"} ! sclera

[Term]
id: UBERON:0010290
name: scleral ossicle
namespace: uberon
def: "A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage." [PMID:17051547]
comment: Taxon notes: The distribution of scleral ossicles and scleral cartilage among verte- brate taxa is not the same. Some taxa (e.g., birds) have both elements; some only have one element (e.g., crocodiles only have a scleral cartilage); while others (e.g., snakes) have neither element (Walls, 1942) number of ossicles making up the sclerotic ring as well as the shape of both the individual plates and the sclerotic ring is variable among tetrapod taxa.... It is therefore extremely likely that scleral skeletal elements (ossicles and cartilage) of all rep- tiles (including birds) are homologous (but cannot be assumed for reptiles and teleosts). Function notes: The function of these elements is to support the eye from within the sclera; scleral ossicles play an additional important role during accommodation in terrestrial vertebrates (Lemmrich, 1931; Walls, 1942; King and McLelland, 1984).
synonym: "scleral ossicle" EXACT [PMID:17051547]
synonym: "sclerotic bone" EXACT [ZFA:0001411]
synonym: "sclerotic ossicle" EXACT []
xref: SCTID:45632000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0010296 ! scleral skeletal element
relationship: part_of UBERON:0001697 {source="ZFA"} ! orbit
relationship: part_of UBERON:0002241 {source="ZFA"} ! chondrocranium

[Term]
id: UBERON:0010296
name: scleral skeletal element
namespace: uberon
comment: An eye adnexal structure, but not necessarily part of the eyeball
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010321 ! skeletal element of eye region
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0010297
name: endochondral scleral ossicle
namespace: uberon
comment: Taxon notes: The scleral ossicles [of teleosts] are reported to form indirectly by endochondral (Hall and Miyake, 1992) or by perichondral ossification (Patterson, 1977) from a cartilage element that is also present in the sclera. This is unlike the scleral ossicles of reptiles, which develop directly from ectomesenchyme (i.e., intramembranous ossification) and independently from the scleral cartilage[PMID:17051547]
xref: TAO:0001411
xref: ZFA:0001411
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0010290 ! scleral ossicle
relationship: develops_from UBERON:0010289 {source="ZFA"} ! scleral cartilage

[Term]
id: UBERON:0010298
name: intramembranous scleral ossicle
namespace: uberon
comment: Development notes: The scleral ossicles [in reptiles] are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991)
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 {source="PMID:11237469"} ! intramembranous bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0010290 ! scleral ossicle
relationship: develops_in UBERON:0010299 ! scleral mesenchyme
relationship: induced_by UBERON:0010300 {source="PMID:16496288"} ! epithelial scleral papilla layer

[Term]
id: UBERON:0010299
name: scleral mesenchyme
namespace: uberon
def: "Mesenchyme surrounding the developing optic cup which develops into the sclera." [PMID:16496288, UBERON:cjm]
comment: Development notes: The mesenchyme surrounding the developing optic cup differentiates into the sclera, the dense fibrous coat of the eye.. PMID:16496288
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme

[Term]
id: UBERON:0010300
name: epithelial scleral papilla layer
namespace: uberon
comment: Development notes: The scleral ossicles are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991). Taxon notes: Scleral papillae (which induce scleral ossicles in birds) have not been reported in teleosts, but evidence for their presence may not have been sought
synonym: "scleral papillae" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
relationship: develops_in UBERON:0010299 ! scleral mesenchyme

[Term]
id: UBERON:0010305
name: region of conjunctiva
namespace: uberon
def: "The conjunctiva is divided into 3 parts." [Wikipedia:Conjunctiva#Gross_anatomy]
subset: grouping_class
synonym: "conjunctiva subdivision" EXACT [FMA:59023]
xref: FMA:59023
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0000064 ! organ part
intersection_of: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0001811 ! conjunctiva

[Term]
id: UBERON:0010308
name: os opticus
namespace: uberon
def: "Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue." [PMID:16496288]
comment: Taxon notes: At present, it has been documented in 219 species from 35 families, including perching birds, woodpeckers, hummingbirds, toucans, kingfishers, and falcons (Tiemeier, 1950). Morphologically, this element varies in shape from a complete encircling element in some woodpeckers (e.g., Melanerpes eryth- rocephalus) to an abbreviated arc in Gallus
synonym: "Gemminger's ossicle" EXACT [PMID:16496288]
synonym: "os nervi optici" EXACT [PMID:16496288]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010298 ! intramembranous scleral ossicle

[Term]
id: UBERON:0010309
name: palpebral bone
namespace: uberon
def: "An ossified element investing the upper eyelid." [PMID:16496288, Wikipedia:Palpebral_(bone)]
comment: Taxon notes: The most extreme development of the palpebral is found in the armored dino- saur Euoplocephalus tutus, where the bone forms a quarter-sphere and adducts to completely occlude the or- bit (Coombs, 1972; Vickaryous and Russell, 2003). Notwithstanding the superficially similar position, palpe- brals and tarsal plates differ both anatomically and developmentally and are not considered homologous (Gauthier et al., 1988). Editor notes PMID:16496288 says 'invests' the eyelid, is this consistent across taxa?
synonym: "palpebral" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0010321 ! skeletal element of eye region
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001712 ! upper eyelid
relationship: part_of UBERON:0001712 ! upper eyelid

[Term]
id: UBERON:0010310
name: nictitating membrane lamina
namespace: uberon
def: "thin cartilaginous element that stiffens the nictitating membrane." [PMID:16496288]
comment: Taxon notes: these laminae may consist of purely hyaline cartilage (cats and horses) or may be heavily invested with elastic fibers (dogs, pigs, and cows; Schlegel et al., 2001)
synonym: "cartilago intercipiens" EXACT [PMID:16496288]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003581 ! eyelid connective tissue
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0010207 ! nictitating membrane
relationship: part_of UBERON:0010207 ! nictitating membrane

[Term]
id: UBERON:0010311
name: scleral sesamoid bone
namespace: uberon
def: "A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle) " [PMID:16496288]
comment: Structure notes: During contraction, the scleral sesamoid bone acts to anchor the pyramidal nictitating muscle to the sclera and divert the tendon from pro- jecting over the cornea. It remains to be determined whether this is indeed a true sesamoid (sensu; Vickaryous and Olson, 2006), as the scleral sesa- moid is actually invested within the synovial tendon sheath and not the tendon per se
synonym: "scleral sesamoid" EXACT [PMID:16496288]
synonym: "scleral sesamoid element" EXACT []
synonym: "sesamoideum esclerae" EXACT [PMID:16496288]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0003465 ! chondrocranium bone
is_a: UBERON:0010290 ! scleral ossicle

[Term]
id: UBERON:0010312
name: immature eye
namespace: uberon
def: "Developing anatomical structure that develops into the eyeball and associated structures." [ZFA:0001678]
synonym: "future eye" EXACT []
xref: TAO:0002201
xref: ZFA:0001678
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005423 ! developing anatomical structure
intersection_of: UBERON:0005423 ! developing anatomical structure
intersection_of: has_developmental_contribution_from UBERON:0003071 ! eye primordium
relationship: develops_from UBERON:0003071 {evidence="definitional"} ! eye primordium
relationship: has_developmental_contribution_from UBERON:0003071 ! eye primordium

[Term]
id: UBERON:0010313
name: neural crest-derived structure
namespace: uberon
def: "An anatomical structure that develops from the neural crest." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0002342 ! neural crest

[Term]
id: UBERON:0010314
name: structure with developmental contribution from neural crest
namespace: uberon
def: "An anatomical structure that has some part that develops from the neural crest." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: has_developmental_contribution_from UBERON:0002342 ! neural crest
relationship: has_developmental_contribution_from UBERON:0002342 ! neural crest

[Term]
id: UBERON:0010316
name: germ layer / neural crest
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000479 {source="GO", source="ZFA"} ! tissue
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005291 ! embryonic tissue

[Term]
id: UBERON:0010317
name: germ layer / neural crest derived structure
namespace: uberon
comment: Grouping term for query purposes
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000061 ! anatomical structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0010316 ! germ layer / neural crest
relationship: develops_from UBERON:0010316 ! germ layer / neural crest

[Term]
id: UBERON:0010321
name: skeletal element of eye region
namespace: uberon
synonym: "eye skeleton" RELATED []
synonym: "ocular skeleton" RELATED []
synonym: "skeletal element of ocular region" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: part_of UBERON:0004088 ! ocular region
relationship: develops_from UBERON:0002342 {source="PMID:16496288"} ! neural crest
relationship: part_of UBERON:0004088 ! ocular region
relationship: part_of UBERON:0010325 ! craniofacial skeleton

[Term]
id: UBERON:0010323
name: cranial skeleton
namespace: uberon
def: "Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." [VAO:0000049]
xref: VAO:0000049
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 {source="VAO"} ! subdivision of skeleton
relationship: part_of UBERON:0005944 {source="VAO"} ! axial skeleton

[Term]
id: UBERON:0010324
name: craniofacial region
namespace: uberon
xref: VAO:0000083
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="VAO"} ! anatomical cluster
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:0010325
name: craniofacial skeleton
namespace: uberon
def: "Cranial skeleton derived from neural crest cells." [VAO:0000082]
comment: AO notes: relations differ from VAO
synonym: "Cranio-facial skeleton" EXACT [VAO:curator]
xref: VAO:0000082
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: develops_from UBERON:0002342 ! neural crest
relationship: part_of UBERON:0010323 ! cranial skeleton
relationship: part_of UBERON:0010324 ! craniofacial region

[Term]
id: UBERON:0010326
name: optic pedicel
namespace: uberon
def: "permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation." [ISBN10:071676959X, PMID:16496288]
synonym: "eye stalk" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003932 ! chondrocranium cartilage
relationship: part_of UBERON:0004088 ! ocular region

[Term]
id: UBERON:0010329
name: limb/fin bud mesenchyme
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010377 ! mesenchyme from somatopleure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004357 ! limb/fin bud
relationship: develops_from UBERON:0010377 {source="EHDAA2-abduced"} ! mesenchyme from somatopleure
relationship: part_of UBERON:0004357 ! limb/fin bud

[Term]
id: UBERON:0010343
name: 2nd arch mesenchyme from head mesenchyme
namespace: uberon
synonym: "mesenchyme derived from head mesoderm of mesenchyme of 2nd arch" EXACT [EMAPA:16280]
xref: EHDAA2:0000067
xref: EMAPA:16280
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005689 ! 2nd arch mesenchyme
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0005689 ! 2nd arch mesenchyme
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme

[Term]
id: UBERON:0010348
name: hyoid pre-muscle mass
namespace: uberon
synonym: "hyoid muscle plate" RELATED []
xref: EHDAA2:0000795
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010343 {source="EHDAA2"} ! 2nd arch mesenchyme from head mesenchyme

[Term]
id: UBERON:0010349
name: otic capsule pre-cartilage condensation
namespace: uberon
synonym: "otic capsule anlage" EXACT []
xref: EHDAA2:0000833
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: part_of UBERON:0001846 {source="EHDAA2"} ! internal ear

[Term]
id: UBERON:0010351
name: otic capsule cartilage condensation
namespace: uberon
xref: EHDAA2:0001333
xref: EHDAA:4704
xref: EMAPA:17596
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: adjacent_to UBERON:0001694 {source="EHDAA2-modified"} ! petrous part of temporal bone
relationship: develops_from UBERON:0010349 {source="EHDAA2"} ! otic capsule pre-cartilage condensation
relationship: part_of UBERON:0001846 {source="EHDAA2"} ! internal ear

[Term]
id: UBERON:0010354
name: Reichert's cartilage pre-cartilage condensation
namespace: uberon
synonym: "future Reichert's cartilage" EXACT []
synonym: "hyoid cartilage pre-cartilage condensation" EXACT [EMAPA:17351]
xref: EMAPA:17351
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0010254 {source="EHDAA2", source="doi:10.1111/j.1469-7580.2005.00441.x"} ! 2nd arch mesenchyme from neural crest

[Term]
id: UBERON:0010355
name: ossification center
namespace: uberon
def: "The first step in ossification of the cartilage is that the cartilage cells, at the point where ossification is commencing and which is termed a ossification center, enlarge and arrange themselves in rows. The matrix in which they are imbedded increases in quantity, so that the cells become further separated from each other. A deposit of calcareous material now takes place in this matrix, between the rows of cells, so that they become separated from each other by longitudinal columns of calcified matrix, presenting a granular and opaque appearance. Here and there the matrix between two cells of the same row also becomes calcified, and transverse bars of calcified substance stretch across from one calcareous column to another. Thus there are longitudinal groups of the cartilage cells enclosed in oblong cavities, the walls of which are formed of calcified matrix which cuts off all nutrition from the cells; the cells, in consequence, atrophy, leaving spaces called the primary areolC&." [Wikipedia:Ossification_center]
comment: Editors note: currently classified as a zone of a bone organ, but exists prior to bone ossifying
synonym: "center of ossification" RELATED [Wikipedia:Ossification_center]
synonym: "centrum ossificationis" EXACT [FMA:TA]
synonym: "ossification centre" EXACT [FMA:75436]
xref: FMA:75436
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ

[Term]
id: UBERON:0010356
name: primary ossification center
namespace: uberon
def: "A primary ossification center is the first area of a bone to start ossifying. It usually appears during prenatal development in the central part of each developing bone. In long bones the primary centers occur in the diaphysis/shaft and in irregular bones the primary centers occur usually in the body of the bone. Most bones have only one primary center (e.g. all long bones) but some irregular bones such as the os coxa (hip) and vertebrae have multiple primary centers." [Wikipedia:Ossification_center#Primary]
synonym: "primarium" EXACT [FMA:TA]
synonym: "primary ossification centre" EXACT [FMA:75447]
xref: FMA:75447
xref: ncithesaurus:Primary_Ossification_Center
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010355 {source="FMA"} ! ossification center

[Term]
id: UBERON:0010357
name: secondary ossification center
namespace: uberon
def: "A secondary ossification center is the area of ossification that appears after the primary ossification center has already appeared - most of which appear during the postnatal and adolescent years. Most bones have more than one secondary ossification center. In long bones, the secondary centres appear in the epiphyses." [Wikipedia:Ossification_center#Secondary]
synonym: "secondary ossification centre" EXACT [FMA:75448]
synonym: "secundarium" EXACT [FMA:TA]
xref: FMA:75448
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010355 {source="FMA"} ! ossification center

[Term]
id: UBERON:0010358
name: arch of centrum of vertebra
namespace: uberon
comment: AO notes: Note that humans do not have hemal arches, so VA=NA for FMA
synonym: "arch of vertebra" NARROW [FMA:11946]
synonym: "arcus vertebrae (vertebralis)" NARROW [FMA:11946]
synonym: "vertebra arch" NARROW [MA:0001453]
synonym: "vertebral arch" NARROW [FMA:11946]
xref: FMA:11946
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0002412 {source="FMA"} ! vertebra

[Term]
id: UBERON:0010359
name: pharyngeal arch mesenchyme from neural crest
namespace: uberon
comment: Partially implements UBERONREF:0000002 NC meeting scheme
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme

[Term]
id: UBERON:0010360
name: pharyngeal arch mesenchyme from head mesenchyme
namespace: uberon
comment: Partially implements UBERONREF:0000002 NC meeting scheme
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme

[Term]
id: UBERON:0010361
name: synostosis
namespace: uberon
def: "Nonsynovial joint in which the articulating bones are connected by bone. Examples: epiphyseal junction, manubriosternal synostosis." [FMA:7499]
synonym: "bony union" EXACT [FMA:7499]
synonym: "junctura ossea" EXACT [FMA:TA]
xref: FMA:7499
xref: ZFA:0005610
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000982 {source="ZFA"} ! skeletal joint

[Term]
id: UBERON:0010362
name: endoskeleton
namespace: uberon
def: "Skeletal system that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues." [XAO:0004026]
synonym: "replacement skeleton" EXACT [XAO:0004026]
xref: VAO:0000037
xref: XAO:0004026
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="XAO"} ! anatomical cluster
relationship: part_of UBERON:0004288 {source="XAO"} ! skeleton

[Term]
id: UBERON:0010363
name: endochondral element
namespace: uberon
def: "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VAO:0000139]
synonym: "endochondral replacement element" EXACT [VAO:0000139]
xref: VAO:0000139
xref: XAO:0004017
xref: ZFA:0005620
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 {source="VAO"} ! skeletal element

[Term]
id: UBERON:0010364
name: dermal skeleton
namespace: uberon
def: "Skeletal subdivision that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements." [VAO:0000035]
synonym: "dermal skeletal system" RELATED [VAO:curator]
synonym: "dermoskeleton" RELATED [VAO:curator]
synonym: "desmoskeleton" RELATED [VAO:curator]
synonym: "exoskeleton" RELATED [VAO:curator]
xref: VAO:0000035
xref: XAO:0004025
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010912 {source="VAO"} ! subdivision of skeleton

[Term]
id: UBERON:0010365
name: odontoid tissue
namespace: uberon
def: "Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla." [VAO:0000063]
synonym: "dental tissue" RELATED [VAO:curator]
synonym: "odontogenic tissue" EXACT [VAO:curator]
xref: ncithesaurus:Tooth_Tissue
xref: VAO:0000063
xref: XAO:0004046
xref: ZFA:0005623
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004755 {source="VAO"} ! skeletal tissue
relationship: develops_from UBERON:0001763 {source="VAO"} ! dental papilla
relationship: part_of UBERON:0010364 {source="VAO"} ! dermal skeleton

[Term]
id: UBERON:0010368
name: pulmonary lobule
namespace: uberon
xref: FMA:75739
xref: ncithesaurus:Pulmonary_Lobule
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0009911 {source="FMA"} ! lobule
relationship: part_of UBERON:0002048 ! lung

[Term]
id: UBERON:0010371
name: ecto-epithelium
namespace: uberon
def: "Epithelium that derives from the ectoderm. Examples: epithelium of acinus of lactiferous duct, subscapular lens epithelium, epithelium of posterior surface of cornea." [FMA:69064]
synonym: "ectoderm-derived epithelium" EXACT []
xref: FMA:69064
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004121 ! ectoderm-derived structure
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0000924 ! ectoderm

[Term]
id: UBERON:0010372
name: uncinate process of ethmoid
namespace: uberon
def: "In the ethmoid bone, a curved lamina, the uncinate process, projects downward and backward from this part of the labyrinth; it forms a small part of the medial wall of the maxillary sinus, and articulates with the ethmoidal process of the inferior nasal concha." [Wikipedia:Uncinate_process_of_ethmoid_bone]
synonym: "processus uncinatus" RELATED [Wikipedia:Uncinate_process_of_ethmoid_bone]
synonym: "uncinate process" BROAD INCONSISTENT [SCTID:306373001]
synonym: "uncinate process of the ethmoid" EXACT [Wikipedia:Uncinate_process_of_ethmoid_bone]
synonym: "uncinate process of the ethmoid bone" EXACT [Wikipedia:Uncinate_process_of_ethmoid_bone]
xref: FMA:57455
xref: SCTID:306373001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004529 {source="FMA"} ! anatomical projection
disjoint_from: UBERON:0010373 ! uncinate process of pancreas

[Term]
id: UBERON:0010373
name: uncinate process of pancreas
namespace: uberon
def: "In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP]" [Wikipedia:Uncinate_process_of_pancreas]
synonym: "lesser pancreas" EXACT [FMA:15857]
synonym: "processus uncinatus (pancreas)" EXACT [FMA:15857]
synonym: "Winslow's pancreas" EXACT [FMA:15857]
xref: EMAPA:18823
xref: FMA:15857
xref: ncithesaurus:Uncinate_Pancreas
xref: SCTID:245383008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004529 {source="FMA"} ! anatomical projection
relationship: develops_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud
relationship: part_of UBERON:0001069 {source="FMA"} ! head of pancreas

[Term]
id: UBERON:0010375
name: pancreas dorsal primordium
namespace: uberon
xref: EHDAA2:0001384
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
is_a: UBERON:0001048 {source="EHDAA2"} ! primordium
is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium

[Term]
id: UBERON:0010376
name: pancreas ventral primordium
namespace: uberon
xref: EHDAA2:0001387
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 {source="EHDAA2"} ! primordium
is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium

[Term]
id: UBERON:0010377
name: mesenchyme from somatopleure
namespace: uberon
xref: EHDAA2:0001120
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0004874 ! somatopleure
relationship: develops_from UBERON:0004874 ! somatopleure
relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme

[Term]
id: UBERON:0010379
name: superior tarsal muscle
namespace: uberon
def: "The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid." [Wikipedia:Superior_tarsal_muscle]
comment: Editors note: declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle)
synonym: "mueller muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "Mueller's muscle" EXACT [FMA:49058]
synonym: "Muller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "Müller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "the superior tarsal muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
xref: FMA:49058
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0003386 ! smooth muscle of eye
relationship: continuous_with UBERON:0001604 {source="FMA"} ! levator palpebrae superioris
relationship: part_of UBERON:0001712 ! upper eyelid

[Term]
id: UBERON:0010388
name: proximal segment of rib
namespace: uberon
def: "The segment of the rib that connects to a vertebra[MP]. a small part of the rib composed of the head, neck, tuberculum and a short proximal part of the body[PMID]" [MP:0000152, PMID:15906248]
comment: The proximal rib derives from the caudal half of somite[PMID:15906248]
synonym: "proximal part of rib" EXACT [PMID:15906248]
synonym: "proximal rib" EXACT [MA:0001400]
xref: MA:0001400
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0002228 {source="MA"} ! rib

[Term]
id: UBERON:0010389
name: pterygoid bone
namespace: uberon
def: "a bone which corresponds to the inner plate of the pterygoid process of the human skull, but which, in all vertebrates below mammals, is not connected with the posterior nares, but serves to connect the palatine bones with the point of suspension of the lower jaw" [http://www.websters-online-dictionary.org/definitions/Pterygoid+bone]
comment: AO notes: FMA dividers pterygoid process into medial and lateral plates
synonym: "inner plate of pterygoid process" RELATED [MA:0001471]
synonym: "lamina lateralis (processus pterygoideus)" EXACT [FMA:54687, MP:0004452]
synonym: "lamina lateralis processi pterygoideus ossis sphenoidalis" EXACT [FMA:TA, MP:0004452]
synonym: "lateral lamina of pterygoid process" EXACT [FMA:54687, MP:0004452]
synonym: "lateral plate of pterygoid process" EXACT [FMA:54687, MP:0004452]
synonym: "lateral plate of sphenoid" EXACT [FMA:54687, MP:0004452]
xref: FMA:54687
xref: MA:0001471
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 {source="MA"} ! chondrocranium bone
relationship: part_of UBERON:0004649 {source="MA"} ! sphenoid bone pterygoid process

[Term]
id: UBERON:0010409
name: eye surface
namespace: uberon
xref: MA:0002486
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0010424
name: distal segment of rib
namespace: uberon
comment: The distal rib derives from both somite halves[PMID:15906248]
synonym: "distal part of rib" EXACT [PMID:15906248]
synonym: "distal rib" EXACT [MA:0001397]
xref: MA:0001397
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0002228 {source="MA"} ! rib

[Term]
id: UBERON:0010425
name: internal naris
namespace: uberon
synonym: "choana" EXACT []
synonym: "internal nostril" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000003 {source="MA"} ! naris

[Term]
id: UBERON:0010426
name: oropharyngeal choana
namespace: uberon
def: "opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [UBERON:cjm]
comment: Taxon notes: Aves. Function notes: has function in pressure equalization in birds that fly to high altitudes
synonym: "apertura nasalis interna" RELATED [AAO:0000025]
synonym: "cleft palate" RELATED []
synonym: "oropharyngeal naris" EXACT []
synonym: "palatal choana" EXACT []
synonym: "palatal cleft" RELATED []
xref: AAO:0000025
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010425 ! internal naris
relationship: adjacent_to UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001716 ! secondary palate

[Term]
id: UBERON:0010428
name: flat bone
namespace: uberon
def: "Flat bones are those bones which are found where the principal requirement is either extensive protection or the provision of broad surfaces for muscular attachment, the bones are expanded into broad, flat plates, as in the cranium, the ilium, sternum, rib cage, the sacrum and the scapula. These bones are composed of two thin layers of compact tissue enclosing between them a variable quantity of cancellous tissue, which is the location of red bone marrow. In an adult, most red blood cells are formed in flat bones. In the cranial bones, the layers of compact tissue are familiarly known as the tables of the skull; the outer one is thick and tough; the inner is thin, dense, and brittle, and hence is termed the vitreous table. The intervening cancellous tissue is called the diploC+, and this, in certain regions of the skull, becomes absorbed so as to leave spaces filled with air (air-sinuses) between the two tables. The flat bones are: the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs." [Wikipedia:Flat_bone]
xref: FMA:7476
xref: ncithesaurus:Flat_Bone
xref: SCTID:332907008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 {source="FMA"} ! bone

[Term]
id: UBERON:0010437
name: zygomaticus muscle
namespace: uberon
def: "One of: zygomaticus major, zygomaticus minor" []
comment: origin: posterior braincase
subset: grouping_class
synonym: "zygomaticus" EXACT [MA:0002404]
xref: MA:0002404
xref: ncithesaurus:Zygomaticus
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 ! muscle of face
is_a: UBERON:0001630 {source="MA"} ! muscle organ
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:0010467
name: teres muscle
namespace: uberon
synonym: "teres" EXACT []
xref: ncithesaurus:Teres_Muscle
xref: SCTID:277440006
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001482 ! muscle of shoulder

[Term]
id: UBERON:0010496
name: teres minor muscle
namespace: uberon
def: "a narrow, elongated muscle of the rotator cuff" [Wikipedia:Teres_minor_muscle]
synonym: "teres minor" EXACT [FMA:32550]
xref: FMA:32550
xref: ncithesaurus:Teres_Minor_Muscle
xref: SCTID:277445001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010467 ! teres muscle
relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff

[Term]
id: UBERON:0010522
name: replacement element
namespace: uberon
def: "Skeletal element that forms as a replacement or substitution of another element or tissue." [VAO:0000135]
xref: VAO:0000135
xref: XAO:0004016
xref: ZFA:0005624
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004765 {source="VAO"} ! skeletal element

[Term]
id: UBERON:0010524
name: fibularis tertius
namespace: uberon
def: "The peroneus tertius (also known as fibularis tertius) is a muscle of the human body located in the lower limb. The muscle arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis. The tendon, after passing under the superior extensor retinaculum of foot and inferior extensor retinaculum of foot in the same canal as the extensor digitorum longus, is inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint." [Wikipedia:Peroneus_tertius]
synonym: "fibularis tertius" RELATED [Wikipedia:Peroneus_tertius]
synonym: "fibularis tertius muscle" RELATED [Wikipedia:Peroneus_tertius]
synonym: "musculus peroneus tertius" EXACT [FMA:TA]
synonym: "peronaeus tertius" RELATED [Wikipedia:Peroneus_tertius]
synonym: "peroneus tertius" EXACT [FMA:22538]
synonym: "peroneus tertius" EXACT [Wikipedia:Peroneus_tertius]
synonym: "peroneus tertius muscle" EXACT [Wikipedia:Peroneus_tertius]
xref: FMA:22538
xref: SCTID:181701000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009132 ! peroneus

[Term]
id: UBERON:0010526
name: fibularis brevis
namespace: uberon
def: "The peroneus brevis muscle (or fibularis brevis) lies under cover of the peroneus longus, and is a shorter and smaller muscle." [Wikipedia:Peroneus_brevis]
synonym: "fibularis brevis" RELATED [Wikipedia:Peroneus_brevis]
synonym: "musculus peroneus brevis" EXACT [FMA:TA]
synonym: "peronaeus brevis" EXACT [Wikipedia:Peroneus_brevis]
synonym: "peroneus brevis" EXACT [FMA:22540]
synonym: "peroneus brevis muscle" EXACT [Wikipedia:Peroneus_brevis]
synonym: "peronius brevis" RELATED [Wikipedia:Peroneus_brevis]
xref: FMA:22540
xref: SCTID:181704008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009132 ! peroneus

[Term]
id: UBERON:0010527
name: cavity of bone organ
namespace: uberon
synonym: "bone organ cavity" EXACT [FMA:24021]
xref: FMA:24021
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002558 ! organ cavity
intersection_of: UBERON:0002558 ! organ cavity
intersection_of: surrounded_by UBERON:0001474 ! bone
relationship: surrounded_by UBERON:0001474 ! bone

[Term]
id: UBERON:0010528
name: pneumatic cavity of bone
namespace: uberon
synonym: "air space of bone" EXACT [FMA:24028]
xref: FMA:24028
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010527 {source="FMA"} ! cavity of bone organ
relationship: part_of UBERON:0008193 ! pneumatized bone

[Term]
id: UBERON:0010538
name: limb/fin segment
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010758 ! appendage segment
intersection_of: UBERON:0010758 ! appendage segment
intersection_of: part_of UBERON:0004708 ! limb/fin
disjoint_from: UBERON:0010912 ! subdivision of skeleton
relationship: part_of UBERON:0004708 ! limb/fin

[Term]
id: UBERON:0010540
name: tarsus pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0001978
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003328 ! mesenchyme of footplate
is_a: UBERON:0010695 ! mesenchyme of tarsal region
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001447 ! tarsal bone
relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region
relationship: develops_into UBERON:0001447 ! tarsal bone
relationship: part_of UBERON:0001445 {source="EHDAA2"} ! skeleton of foot
relationship: part_of UBERON:0003328 ! mesenchyme of footplate
relationship: part_of UBERON:0004454 ! tarsal region

[Term]
id: UBERON:0010541
name: tarsus cartilage condensation
namespace: uberon
xref: EHDAA2:0001977
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003328 ! mesenchyme of footplate
is_a: UBERON:0010695 ! mesenchyme of tarsal region
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001447 ! tarsal bone
relationship: develops_from UBERON:0010540 {source="EHDAA2"} ! tarsus pre-cartilage condensation
relationship: develops_into UBERON:0001447 ! tarsal bone
relationship: part_of UBERON:0001445 {source="EHDAA2"} ! skeleton of foot
relationship: part_of UBERON:0003328 {source="EHDAA2"} ! mesenchyme of footplate
relationship: part_of UBERON:0004454 ! tarsal region

[Term]
id: UBERON:0010543
name: skeleton of acropodium
namespace: uberon
def: "Endochondral terminal bones at the distalmost end of the autopodium, consisting of the phalanges." [VAO:0005028, VAO:NI]
comment: Editor notes: this is not defined in terms of a region, unlike the other autopod subdivisions
synonym: "acropodium" RELATED [VAO:0005028, VAO:NI]
synonym: "digit skeleton" EXACT []
synonym: "set of phalanges" EXACT [FMA:231315]
xref: FMA:231315
xref: VAO:0005028
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010712 ! limb skeleton subdivision
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: part_of UBERON:0006717 ! skeleton of autopod

[Term]
id: UBERON:0010544
name: metacarpal skeleton
namespace: uberon
def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpus]
synonym: "anterior metapodium" RELATED [VAO:0005026, VAO:NI]
synonym: "anterior metapodium skeleton" EXACT []
synonym: "finger metacarpus skeleton" EXACT []
synonym: "fore metapodium" RELATED [AAO:0000946, http://en.wiktionary.org/wiki/metapodial, MA:th]
synonym: "fore metapodium skeleton" RELATED []
synonym: "metacarpal bones" EXACT [FMA:71336]
synonym: "metacarpals [I-V]" EXACT [FMA:71336]
synonym: "metacarpals set" EXACT [FMA:71336]
synonym: "set of metacarpal bones" EXACT [FMA:71336]
synonym: "set of metacarpals" EXACT [FMA:71336]
synonym: "set of metacarpals [I-V]" EXACT [FMA:71336]
xref: AAO:0000946
xref: FMA:71336
xref: MESH:A.02.835.232.087.535
xref: VAO:0005026
xref: XAO:0003208
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010546 ! metapodium skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004453 ! metacarpus region
relationship: develops_from UBERON:0010699 {notes="many to one"} ! finger metacarpus cartilage condensation
relationship: part_of UBERON:0001440 {source="XAO"} ! forelimb skeleton
relationship: part_of UBERON:0004453 ! metacarpus region
relationship: subdivision_of UBERON:0004453 ! metacarpus region

[Term]
id: UBERON:0010545
name: metatarsus skeleton
namespace: uberon
synonym: "metatarsal bones set" EXACT [FMA:71340]
synonym: "metatarsals [I-V]" EXACT [FMA:71340]
synonym: "posterior metapodium" RELATED [VAO:0005027, VAO:NI]
synonym: "posterior metapodium skeleton" EXACT []
synonym: "set of metatarsal bones" EXACT [FMA:71340]
synonym: "set of metatarsals [I-V]" EXACT [FMA:71340]
xref: AAO:0000221
xref: FMA:71340
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MESH:A.01.378.610.250.300.480
xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA
xref: VAO:0005027
xref: XAO:0003212
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010546 ! metapodium skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000983 ! metatarsus region
relationship: develops_from UBERON:0010697 {notes="many to one"} ! toe metatarsal cartilage condensation
relationship: part_of UBERON:0000983 ! metatarsus region
relationship: part_of UBERON:0001441 {source="XAO"} ! hindlimb skeleton
relationship: subdivision_of UBERON:0000983 ! metatarsus region

[Term]
id: UBERON:0010546
name: metapodium skeleton
namespace: uberon
def: "Endochondral bone complex located between the mesopodium and the acropodium and consisting of the metacarpals or metatarsals." [VAO:0005025, VAO:NI]
synonym: "metacarpal/metatarsal skeleton" EXACT []
synonym: "metapodium" RELATED [VAO:0005025, VAO:NI]
synonym: "skeleton of metapodium" EXACT []
xref: VAO:0005025
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010712 ! limb skeleton subdivision
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0009877 ! metapodium region
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: part_of UBERON:0009877 ! metapodium region
relationship: subdivision_of UBERON:0009877 ! metapodium region

[Term]
id: UBERON:0010547
name: toe 1 metatarsal pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002040
xref: EMAPA:17725
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010580 ! toe 1 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme

[Term]
id: UBERON:0010548
name: toe 2 metatarsal pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002045
xref: EMAPA:17727
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010581 ! toe 2 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme

[Term]
id: UBERON:0010549
name: toe 3 metatarsal pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002050
xref: EMAPA:17729
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010582 ! toe 3 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme

[Term]
id: UBERON:0010550
name: toe 4 metatarsal pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002055
xref: EMAPA:17731
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010583 ! toe 4 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme

[Term]
id: UBERON:0010551
name: toe 5 metatarsal pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002060
xref: EMAPA:17733
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010584 ! toe 5 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme

[Term]
id: UBERON:0010557
name: toe 1 metatarsal cartilage condensation
namespace: uberon
xref: EMAPA:18106
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010680 ! toe 1 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: develops_from UBERON:0010547 ! toe 1 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme

[Term]
id: UBERON:0010558
name: toe 2 metatarsal cartilage condensation
namespace: uberon
xref: EMAPA:18111
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010681 ! toe 2 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: develops_from UBERON:0010548 ! toe 2 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme

[Term]
id: UBERON:0010559
name: toe 3 metatarsal cartilage condensation
namespace: uberon
xref: EMAPA:18116
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010682 ! toe 3 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: develops_from UBERON:0010549 ! toe 3 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme

[Term]
id: UBERON:0010560
name: toe 4 metatarsal cartilage condensation
namespace: uberon
xref: EMAPA:18121
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010683 ! toe 4 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: develops_from UBERON:0010550 ! toe 4 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme

[Term]
id: UBERON:0010561
name: toe 5 metatarsal cartilage condensation
namespace: uberon
xref: EMAPA:18126
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010684 ! toe 5 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: develops_from UBERON:0010551 ! toe 5 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme

[Term]
id: UBERON:0010562
name: toe 1 mesenchyme
namespace: uberon
xref: EHDAA2:0002039
xref: EMAPA:17462
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005255 ! foot digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1

[Term]
id: UBERON:0010564
name: finger 1 mesenchyme
namespace: uberon
xref: EHDAA2:0000513
xref: EMAPA:17431
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005257 ! hand digit mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1

[Term]
id: UBERON:0010565
name: finger 1 metacarpus pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000515
xref: EMAPA:17714
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010575 ! finger 1 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme

[Term]
id: UBERON:0010566
name: finger 2 metacarpus pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000521
xref: EMAPA:17716
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010576 ! finger 2 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme

[Term]
id: UBERON:0010567
name: finger 3 metacarpus pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000527
xref: EMAPA:17718
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010577 ! finger 3 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme

[Term]
id: UBERON:0010568
name: finger 4 metacarpus pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000533
xref: EMAPA:17720
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010578 ! finger 4 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme

[Term]
id: UBERON:0010569
name: finger 5 metacarpus pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000539
xref: EMAPA:17722
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010579 ! finger 5 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme

[Term]
id: UBERON:0010570
name: finger 1 metacarpus cartilage condensation
namespace: uberon
xref: EHDAA2:0000514
xref: EMAPA:18065
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010675 ! finger 1 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: develops_from UBERON:0010565 ! finger 1 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme

[Term]
id: UBERON:0010571
name: finger 2 metacarpus cartilage condensation
namespace: uberon
xref: EHDAA2:0000520
xref: EMAPA:18070
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010676 ! finger 2 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: develops_from UBERON:0010566 ! finger 2 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme

[Term]
id: UBERON:0010572
name: finger 3 metacarpus cartilage condensation
namespace: uberon
xref: EHDAA2:0000526
xref: EMAPA:18075
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010677 ! finger 3 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: develops_from UBERON:0010567 ! finger 3 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme

[Term]
id: UBERON:0010573
name: finger 4 metacarpus cartilage condensation
namespace: uberon
xref: EHDAA2:0000532
xref: EMAPA:18080
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010678 ! finger 4 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: develops_from UBERON:0010568 ! finger 4 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme

[Term]
id: UBERON:0010574
name: finger 5 metacarpus cartilage condensation
namespace: uberon
xref: EHDAA2:0000538
xref: EMAPA:18085
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010679 ! finger 5 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: develops_from UBERON:0010569 ! finger 5 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme

[Term]
id: UBERON:0010575
name: finger 1 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000516
xref: EMAPA:17715
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010564 ! finger 1 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme

[Term]
id: UBERON:0010576
name: finger 2 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000522
xref: EMAPA:17717
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005692 ! finger 2 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme

[Term]
id: UBERON:0010577
name: finger 3 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000528
xref: EMAPA:17719
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005693 ! finger 3 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme

[Term]
id: UBERON:0010578
name: finger 4 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000534
xref: EMAPA:17721
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005694 ! finger 4 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme

[Term]
id: UBERON:0010579
name: finger 5 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0000540
xref: EMAPA:17723
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005695 ! finger 5 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme

[Term]
id: UBERON:0010580
name: toe 1 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002041
xref: EMAPA:17726
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010562 ! toe 1 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme

[Term]
id: UBERON:0010581
name: toe 2 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002046
xref: EMAPA:17728
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005696 ! toe 2 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme

[Term]
id: UBERON:0010582
name: toe 3 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002051
xref: EMAPA:17730
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005697 ! toe 3 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme

[Term]
id: UBERON:0010583
name: toe 4 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002056
xref: EMAPA:17732
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005698 ! toe 4 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme

[Term]
id: UBERON:0010584
name: toe 5 phalanx pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002061
xref: EMAPA:17734
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005699 ! toe 5 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme

[Term]
id: UBERON:0010585
name: toe phalanx pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005255 ! foot digit mesenchyme
is_a: UBERON:0010700 ! phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005255 ! foot digit mesenchyme
relationship: part_of UBERON:0005255 ! foot digit mesenchyme

[Term]
id: UBERON:0010586
name: finger phalanx pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005257 ! hand digit mesenchyme
is_a: UBERON:0010700 ! phalanx pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005257 ! hand digit mesenchyme
relationship: part_of UBERON:0005257 ! hand digit mesenchyme

[Term]
id: UBERON:0010675
name: finger 1 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18066
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010564 ! finger 1 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: develops_from UBERON:0010575 ! finger 1 phalanx pre-cartilage condensation
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme

[Term]
id: UBERON:0010676
name: finger 2 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18071
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005692 ! finger 2 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: develops_from UBERON:0010576 ! finger 2 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme

[Term]
id: UBERON:0010677
name: finger 3 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18076
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005693 ! finger 3 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: develops_from UBERON:0010577 ! finger 3 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme

[Term]
id: UBERON:0010678
name: finger 4 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18081
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005694 ! finger 4 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: develops_from UBERON:0010578 ! finger 4 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme

[Term]
id: UBERON:0010679
name: finger 5 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18086
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005695 ! finger 5 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: develops_from UBERON:0010579 ! finger 5 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme

[Term]
id: UBERON:0010680
name: toe 1 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18107
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010562 ! toe 1 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: develops_from UBERON:0010580 ! toe 1 phalanx pre-cartilage condensation
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme

[Term]
id: UBERON:0010681
name: toe 2 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18112
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005696 ! toe 2 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: develops_from UBERON:0010581 ! toe 2 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme

[Term]
id: UBERON:0010682
name: toe 3 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18117
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005697 ! toe 3 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: develops_from UBERON:0010582 ! toe 3 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme

[Term]
id: UBERON:0010683
name: toe 4 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18122
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005698 ! toe 4 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: develops_from UBERON:0010583 ! toe 4 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme

[Term]
id: UBERON:0010684
name: toe 5 phalanx cartilage condensation
namespace: uberon
xref: EMAPA:18127
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005699 ! toe 5 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: develops_from UBERON:0010584 ! toe 5 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme

[Term]
id: UBERON:0010685
name: toe phalanx cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005255 ! foot digit mesenchyme
is_a: UBERON:0010701 ! phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005255 ! foot digit mesenchyme
relationship: develops_from UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005255 ! foot digit mesenchyme

[Term]
id: UBERON:0010686
name: finger phalanx cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005257 ! hand digit mesenchyme
is_a: UBERON:0010701 ! phalanx cartilage condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005257 ! hand digit mesenchyme
relationship: develops_from UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005257 ! hand digit mesenchyme

[Term]
id: UBERON:0010687
name: toe metatarsal pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005255 ! foot digit mesenchyme

[Term]
id: UBERON:0010688
name: skeleton of anterior acropodium
namespace: uberon
def: "Endochondral acropodial bones forming the distalmost section of the anterior autopodium." [VAO:0005029, VAO:NI]
synonym: "anterior acropodium" RELATED [VAO:0005029, VAO:NI]
synonym: "hand digit skeleton" EXACT []
synonym: "manual phalanges" EXACT PLURAL [VAO:0005029, VAO:NI]
synonym: "phalanges of hand" EXACT [FMA:71337]
synonym: "set of phalanges of hand" EXACT [FMA:71337]
xref: FMA:71337
xref: VAO:0005029
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010543 ! skeleton of acropodium
intersection_of: UBERON:0010543 ! skeleton of acropodium
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand

[Term]
id: UBERON:0010695
name: mesenchyme of tarsal region
namespace: uberon
def: "Mesenchyme of the carpal region that conributes to the tarsal skeleton." [UBERON:cjm]
xref: EMAPA:18500
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003860 ! hindlimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0004454 ! tarsal region

[Term]
id: UBERON:0010696
name: skeleton of posterior acropodium
namespace: uberon
synonym: "foot digit skeleton" EXACT []
synonym: "pedal phalanges" EXACT [VAO:0005030, VAO:NI]
synonym: "phalanges of foot" EXACT [FMA:78512]
synonym: "posterior acropodium" RELATED [VAO:0005030, VAO:NI]
synonym: "set of phalanges of foot" EXACT [FMA:78512]
xref: FMA:78512
xref: VAO:0005030
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010543 ! skeleton of acropodium
intersection_of: UBERON:0010543 ! skeleton of acropodium
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001445 ! skeleton of foot
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0010697
name: toe metatarsal cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0005255 ! foot digit mesenchyme

[Term]
id: UBERON:0010698
name: finger metacarpus pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005257 ! hand digit mesenchyme

[Term]
id: UBERON:0010699
name: finger metacarpus cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
relationship: develops_from UBERON:0010698 ! finger metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005257 ! hand digit mesenchyme

[Term]
id: UBERON:0010700
name: phalanx pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010702 ! digit mesenchyme
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0010702 ! digit mesenchyme
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: part_of UBERON:0010702 ! digit mesenchyme

[Term]
id: UBERON:0010701
name: phalanx cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010702 ! digit mesenchyme
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0010702 ! digit mesenchyme
relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: part_of UBERON:0010702 ! digit mesenchyme

[Term]
id: UBERON:0010702
name: digit mesenchyme
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0009749 ! limb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002544 ! digit
relationship: part_of UBERON:0002544 ! digit

[Term]
id: UBERON:0010703
name: forelimb zeugopod skeleton
namespace: uberon
def: "The collection of all skeletal elements in an forelimb zeugopod region." [UBERON:cjm]
synonym: "anterior zeugopodium" RELATED [VAO:0005011, VAO:NI]
synonym: "anterior zeugopodium skeleton" EXACT [VAO:0005011, VAO:NI]
synonym: "fore epipodium" RELATED [AAO:0000200]
synonym: "fore epipodium skeleton" EXACT []
synonym: "forearm skeleton" EXACT [FMA:71199]
synonym: "forelimb epipodium" RELATED [VAO:0005011, VAO:NI]
synonym: "forelimb epipodium skeleton" RELATED []
synonym: "skeleton of forearm" EXACT [FMA:71199]
xref: AAO:0000200
xref: FMA:71199
xref: VAO:0005011
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010712 ! limb skeleton subdivision
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
intersection_of: subdivision_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0001440 ! forelimb skeleton
relationship: part_of UBERON:0002386 ! forelimb zeugopod
relationship: proximally_connected_to UBERON:0000976 ! humerus
relationship: subdivision_of UBERON:0002386 ! forelimb zeugopod

[Term]
id: UBERON:0010707
name: appendage girdle complex
namespace: uberon
def: "Anatomical group that consists of the soft and skeletal tissues of the appendicular region of the body and the appendage proper." [VAO:0000214]
comment: It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither).  There are many fishes and other vertebrates with only a girdle and no outgrowth.
synonym: "girdle plus limb or fin" EXACT [UBERON:cjm]
synonym: "limb" RELATED INCONSISTENT [FMA:7182]
xref: FMA:7182
xref: VAO:0000214
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
created_by: haendel
creation_date: 2012-04-23T10:46:51Z

[Term]
id: UBERON:0010708
name: pectoral complex
namespace: uberon
def: "Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VAO:0000213]
synonym: "pectoral girdle plus anterior limb or fin" EXACT [UBERON:cjm]
synonym: "upper limb" RELATED INCONSISTENT [FMA:7183]
xref: FMA:7183
xref: VAO:0000213
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010707 ! appendage girdle complex
intersection_of: UBERON:0010707 ! appendage girdle complex
intersection_of: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0000153 ! anterior region of body

[Term]
id: UBERON:0010709
name: pelvic complex
namespace: uberon
def: "Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VAO:0000215]
comment: Note the MA class 'hindlimb' may belong here
synonym: "lower limb" RELATED INCONSISTENT [FMA:7184]
synonym: "pelvic girdle plus posterior limb or fin" EXACT [UBERON:cjm]
xref: FMA:7184
xref: VAO:0000215
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010707 ! appendage girdle complex
intersection_of: UBERON:0010707 ! appendage girdle complex
intersection_of: part_of UBERON:0000154 ! posterior region of body
relationship: part_of UBERON:0000154 ! posterior region of body

[Term]
id: UBERON:0010710
name: pectoral fin skeleton
namespace: uberon
def: "Paired fin skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid." [TAO:wd]
synonym: "forefin skeleton" EXACT [TAO:0000943]
xref: EFO:0003594
xref: TAO:0000943
xref: VAO:0000153
xref: ZFA:0000943
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010713 ! paired fin skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000151 ! pectoral fin
relationship: part_of UBERON:0000151 {source="TAO"} ! pectoral fin
relationship: subdivision_of UBERON:0000151 ! pectoral fin

[Term]
id: UBERON:0010711
name: pelvic fin skeleton
namespace: uberon
def: "Paired fin skeleton located in the abdominal position that consists of supporting endochondral radialsB and dermal fin rays or lepidotrichia." [TAO:0001387]
comment: AO Notes: the girdle is part of the pelvic fin skeleton in ZFA - needs resolved
xref: TAO:0001387
xref: VAO:0000154
xref: ZFA:0001387
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010713 ! paired fin skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000152 ! pelvic fin
relationship: part_of UBERON:0000152 {source="TAO"} ! pelvic fin
relationship: subdivision_of UBERON:0000152 ! pelvic fin

[Term]
id: UBERON:0010712
name: limb skeleton subdivision
namespace: uberon
def: "Skeletal subdivision that is a segment of the limb skeleton." [VAO:0005018, VAO:NI]
comment: Editor notes - note the distinction between this and skeleton of limb
xref: VAO:0005018
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002091 {source="VAO"} ! entire appendicular skeleton
relationship: part_of UBERON:0002101 ! limb

[Term]
id: UBERON:0010713
name: paired fin skeleton
namespace: uberon
def: "The collection of all skeletal elements in a single paired fin." [UBERON:cjm]
xref: TAO:0000027
xref: VAO:0000169
xref: ZFA:0000027
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002534 ! paired fin
relationship: part_of UBERON:0002534 ! paired fin
relationship: subdivision_of UBERON:0002534 ! paired fin

[Term]
id: UBERON:0010714
name: iliac cartilage condensation
namespace: uberon
xref: EHDAA2:0000808
xref: EMAPA:18347
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0006247 {source="EHDAA2"} ! iliac pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0010718
name: pubic cartilage condensation
namespace: uberon
xref: EHDAA2:0001573
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0006285 {source="EHDAA2"} ! pubic pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle

[Term]
id: UBERON:0010719
name: girdle skeleton
namespace: uberon
def: "The subdivision of the skeleton of one of the pectoral or pelvic girdles." [UBERON:cjm]
comment: AO notes: AAO treats the girdles as part of the appendicular skeleton
xref: AAO:0010686
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010912 ! subdivision of skeleton
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0007823 ! appendage girdle region
relationship: subdivision_of UBERON:0007823 ! appendage girdle region

[Term]
id: UBERON:0010720
name: hindlimb zeugopod skeleton
namespace: uberon
def: "The collection of all skeletal elements in an hindlimb zeugopod region." [UBERON:cjm]
synonym: "hind epipodium" RELATED [AAO:0000216]
synonym: "hindlimb epipodium" RELATED [VAO:0005014, VAO:NI]
synonym: "posterior zeugopodium" RELATED INCONSISTENT [VAO:0005014]
synonym: "posterior zeugopodium skeleton" EXACT []
xref: AAO:0000216
xref: VAO:0005014
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010712 ! limb skeleton subdivision
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: proximally_connected_to UBERON:0000981 ! femur
relationship: subdivision_of UBERON:0003823 ! hindlimb zeugopod

[Term]
id: UBERON:0010721
name: distal tarsal bone
namespace: uberon
def: "There are three cuneiform bones in the human foot: the medial cuneiform the intermediate cuneiform also known as the middle the lateral cuneiform. They are located between the navicular bone and the first, second and third metatarsal bones and are medial to the cuboid bone[WP, unvetted, human specific]." [Wikipedia:Cuneiform_%28anatomy%29]
synonym: "cuneiform bone" EXACT [FMA:24517]
synonym: "distal tarsal" EXACT [AAO:0000914]
synonym: "distal tarsal bone" EXACT []
synonym: "os cuneiform" EXACT []
xref: AAO:0000914
xref: FMA:24517
xref: ncithesaurus:Cuneiform_Bone_of_the_Foot
xref: SCTID:182102002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001447 ! tarsal bone
is_a: UBERON:0002513 {source="VAO"} ! endochondral bone
relationship: distally_connected_to UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0009879 ! tarsal skeleton

[Term]
id: UBERON:0010722
name: accessory bone
namespace: uberon
def: "A bone which does not occur frequently in the body but is still present in a significantly large number of organisms" [Wikipedia:Accessory_bone]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone

[Term]
id: UBERON:0010723
name: vesalian bone
namespace: uberon
def: "an accessory bone located proximal to the base of the fifth metatarsal. Its prevalence has been reported to be from 0.1% to 1.0%. This bone is found within the peroneus brevis tendon and is considered to be asymptomatic in the majority of people" [PMID:16291851]
synonym: "os vesalianum pedis" EXACT []
xref: SCTID:182149003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001447 ! tarsal bone
is_a: UBERON:0010722 ! accessory bone

[Term]
id: UBERON:0010724
name: lateral tubercle of talus
namespace: uberon
def: "An accessory bone tubercle which if present lies posterior to the talus" [Wikipedia:Os_trigonum]
synonym: "accessory talus" EXACT [Wikipedia:Os_trigonum]
synonym: "os trigonum" EXACT [FMA:TA]
synonym: "os trigonum of talus" EXACT [FMA:33655]
synonym: "tuberculum laterale (talus)" EXACT [FMA:33655]
xref: FMA:33655
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005813 {source="FMA"} ! tubercle
is_a: UBERON:0005899 ! foot bone
is_a: UBERON:0010722 ! accessory bone
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0010725
name: accessory navicular bone
namespace: uberon
def: "an accessory bone of the foot that occasionally develops abnormally in front of the ankle towards the inside of the foot. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic" [Wikipedia:Accessory_navicular_bone]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005899 ! foot bone
is_a: UBERON:0010722 ! accessory bone
relationship: part_of UBERON:0002387 ! foot

[Term]
id: UBERON:0010726
name: os vesalianum manus
namespace: uberon
xref: http://www.anatomyatlases.org/AnatomicVariants/SkeletalSystem/Images/94.jpg
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001435 ! carpal bone
is_a: UBERON:0010722 ! accessory bone

[Term]
id: UBERON:0010727
name: sutural bone
namespace: uberon
def: "A piece of bone that is located within a suture in the cranium." [Wikipedia:Wormian_bones]
synonym: "wormian bone" EXACT [FMA:59327]
xref: SCTID:272677004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004766 ! cranial bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0003685 ! cranial suture

[Term]
id: UBERON:0010728
name: sphenoid lesser wing pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0003449
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation

[Term]
id: UBERON:0010732
name: alisphenoid pre-cartilage condensation
namespace: uberon
synonym: "sphenoid greater wing pre-cartilage condensation" EXACT [EHDAA2:0003448]
xref: EHDAA2:0003448
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation

[Term]
id: UBERON:0010733
name: alisphenoid cartilage condensation
namespace: uberon
synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450]
xref: EHDAA2:0003450
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0010732 {source="EHDAA2"} ! alisphenoid pre-cartilage condensation
relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid bone cartilage condensation

[Term]
id: UBERON:0010737
name: distal tarsal bone 4
namespace: uberon
def: "Endochondral tarsal bone articulating with centralia and metatarsal 4." [VAO:0005055]
comment: We need to restrict the logical definition such that it is *only* connecting to metatarsal 4
synonym: "cuboideum" RELATED [VAO:0005055]
synonym: "distal tarsal 4" EXACT [VAO:0005055]
synonym: "tarsal 4" EXACT [AAO:0000932]
xref: AAO:0000932
xref: UBERON:0001455
xref: VAO:0005055
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003653 ! metatarsal bone of digit 4
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot

[Term]
id: UBERON:0010738
name: distal tarsal bone 5
namespace: uberon
def: "Endochondral tarsal bone articulating with centralia and metatarsal 5." [VAO:0005056]
comment: We need to restrict the logical definition such that it is *only* connecting to metatarsal 5
synonym: "cuboideum" RELATED [VAO:0005056]
synonym: "distal tarsal 5" EXACT [VAO:0005056]
synonym: "tarsal 5" EXACT [AAO:0000933]
xref: AAO:0000933
xref: VAO:0005056
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003654 ! metatarsal bone of digit 5
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot

[Term]
id: UBERON:0010739
name: distal carpal bone 5
namespace: uberon
def: "endochondral carpal bone similar to distal carpal 4, but lost in most reptiles and mammals." [VAO:0005047]
comment: Taxon notes: lost in most reptiles and mammals[VAO]. Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements[AAO]
synonym: "carpal 5" RELATED [AAO:0000851]
synonym: "distal carpal 5" EXACT [VAO:0005047]
synonym: "hamate" RELATED [VAO:0005047]
synonym: "os hamatum" RELATED [VAO:0005047]
synonym: "unciform" RELATED [VAO:0005047]
synonym: "uncinate" RELATED [VAO:0005047]
xref: AAO:0000851
xref: VAO:0005047
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001481 ! distal carpal bone

[Term]
id: UBERON:0010740
name: bone of appendage girdle complex
namespace: uberon
def: "A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [UBERON:cjm, UBERONREF:0000003]
synonym: "bone of extended limb/fin region" RELATED [UBERON:cjm, UBERONREF:0000003]
synonym: "limb bone" RELATED [MA:0000688, UBERONREF:0000003]
xref: MA:0000688
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0010707 ! appendage girdle complex
relationship: part_of UBERON:0002091 {notes="UBERONREF:0000003"} ! entire appendicular skeleton
relationship: part_of UBERON:0010707 ! appendage girdle complex

[Term]
id: UBERON:0010741
name: bone of pectoral complex
namespace: uberon
def: "A bone that is part of a pectoral complex. Examples: scapula, hand phalanx, any carpal bone, any bone of the pectoral fin." [UBERON:cjm, UBERONREF:0000003]
comment: AO notes - note that the MA class includes girdle parts so it belongs here
synonym: "bone of forelimb or pectoral fin or pectoral girdle" RELATED [UBERON:cjm, UBERONREF:0000003]
synonym: "forelimb bone" RELATED [MA:0000612, UBERONREF:0000003]
xref: MA:0000612
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010740 ! bone of appendage girdle complex
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0010708 ! pectoral complex
relationship: part_of UBERON:0010708 ! pectoral complex

[Term]
id: UBERON:0010742
name: bone of pelvic complex
namespace: uberon
def: "A bone that is part of a pelvic complex. Examples: pubis, ischium, fot phalanx, any tarsal bone, any bone of the pelvic fin or girdle." [UBERON:cjm, UBERONREF:0000003]
synonym: "hindlimb bone" RELATED [MA:0000660, UBERONREF:0000003]
xref: MA:0000660
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010740 {source="MA"} ! bone of appendage girdle complex
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0010709 ! pelvic complex
relationship: part_of UBERON:0010709 ! pelvic complex

[Term]
id: UBERON:0010743
name: meningeal cluster
namespace: uberon
def: "The collection of all meningeal layers that line a central nervous system." [UBERON:cjm]
comment: In some primitive organisms, the meningeal cluster includes only the primitive meninx
synonym: "cluster of meninges" EXACT [FMA:231572]
synonym: "meninges" EXACT [FMA:231572]
xref: EHDAA2:0004661
xref: FMA:231572
xref: SCTID:362879001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system

[Term]
id: UBERON:0010744
name: sacral vertebra pre-cartilage condensation
namespace: uberon
synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:0001774]
xref: EHDAA2:0001774
xref: EMAPA:17677
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0003089 {evidence_from="Aves", notes="Christ et al 200", source="PMID:21455939"} ! sclerotome
relationship: part_of UBERON:0006075 {source="EHDAA2"} ! sacral region of vertebral column

[Term]
id: UBERON:0010745
name: sacral vertebra cartilage condensation
namespace: uberon
synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773]
xref: EHDAA2:0001773
xref: EMAPA:18009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0010744 {source="EHDAA2"} ! sacral vertebra pre-cartilage condensation
relationship: part_of UBERON:0006075 {source="EHDAA2"} ! sacral region of vertebral column

[Term]
id: UBERON:0010746
name: wing of ilium
namespace: uberon
def: "The wing of ilium (or ala) is the large expanded portion which bounds the greater pelvis laterally. It presents for examination two surfacesban external and an internalba crest, and two borders - an anterior and a posterior." [Wikipedia:Wing_of_ilium]
synonym: "ala of ilium" EXACT [FMA:42826]
synonym: "ala ossis ilii" EXACT [FMA:TA]
synonym: "ala ossis ilii" RELATED [Wikipedia:Wing_of_ilium]
synonym: "ilium ala" EXACT [FMA:42826]
xref: FMA:42826
xref: SCTID:182024000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001273 ! ilium

[Term]
id: UBERON:0010747
name: body of ilium
namespace: uberon
def: "The body of ilium enters into the formation of the acetabulum, of which it forms rather less than two-fifths. Its external surface is partly articular, partly non-articular; the articular segment forms part of the lunate surface of the acetabulum, the non-articular portion contributes to the acetabular fossa. The internal surface of the body is part of the wall of the lesser pelvis and gives origin to some fibers of the Obturator internus. Below, it is continuous with the pelvic surfaces of the ischium and pubis, only a faint line indicating the place of union." [Wikipedia:Body_of_ilium]
synonym: "ilium body" EXACT [FMA:42825]
xref: FMA:42825
xref: SCTID:292524005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001273 ! ilium

[Term]
id: UBERON:0010749
name: middle pharyngeal constrictor
namespace: uberon
def: "The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle." [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictor medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictor pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictores pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "hyopharyngeus" RELATED []
synonym: "middle constrictor" EXACT [FMA:46622]
synonym: "middle constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "middle constrictor muscle" RELATED []
synonym: "middle constrictor of pharynx" EXACT [FMA:46622]
synonym: "middle constrictor pharyngeus" EXACT [FMA:46622]
synonym: "middle pharyngeal constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "musculus constrictor pharyngis medius" EXACT [FMA:TA]
xref: FMA:46622
xref: ncithesaurus:Middle_Constrictor_Muscle
xref: SCTID:244802003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001569 {source="FMA"} ! constrictor muscle of pharynx

[Term]
id: UBERON:0010750
name: prefrontal bone
namespace: uberon
def: "a bone separating the lacrimal and frontal bones in many tetrapod skulls" [Wikipedia:Prefrontal_bone]
comment: Taxon notes: It first evolved in the sarcopterygian clade Rhipidistia, which includes lungfish and the Tetrapodomorpha. The prefrontal is found in most modern and extinct lungfish, amphibians and reptiles. It is very small, fused to the frontals or lost in many groups of coelurosaurian theropod dinosaurs and is completely absent in their modern descendants, the birds. The prefrontal was also lost in early mammaliaforms and so is not present in modern mammals either[WP]
synonym: "prefrontal" BROAD [AAO:0000460]
xref: AAO:0000460
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Dromaeosaurus_skull_en.svg/180px-Dromaeosaurus_skull_en.svg.png
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone
relationship: adjacent_to UBERON:0001680 ! lacrimal bone

[Term]
id: UBERON:0010751
name: squamous part of temporal bone primordium
namespace: uberon
xref: EHDAA2:0001907
xref: EHDAA:9536
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest

[Term]
id: UBERON:0010752
name: exoccipital cartilage condensation
namespace: uberon
xref: EMAPA:18339
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation
relationship: develops_into UBERON:0001693 ! exoccipital bone
relationship: part_of UBERON:0002241 {source="EMAPA"} ! chondrocranium

[Term]
id: UBERON:0010757
name: rib 8
namespace: uberon
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
xref: FMA:8120
xref: MA:0001408
xref: ncithesaurus:Rib_8
xref: SCTID:244663007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: "rib_number" "8" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib

[Term]
id: UBERON:0010758
name: appendage segment
namespace: uberon
xref: FBbt:00007018
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000026 ! appendage

[Term]
id: UBERON:0010759
name: equine distal sesamoid
namespace: uberon
def: "lies on the palmar aspect of the coffin joint between the second phalanx and third phalanx. articulates closely with the distal phalanx, to which it is connected by the impar ligament of the navicular bone. The impar ligament is very strong and permits relatively little motion between the navicular bone and the distal phalanx." [Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid, Wikipedia:Navicular_bone#Horse_anatomy]
synonym: "navicular bone" RELATED INCONSISTENT [Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid]
xref: SCTID:370654009
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0002428 ! limb bone
relationship: part_of UBERON:0002470 ! autopod region

[Term]
id: UBERON:0010760
name: supraglenoid tubercle
namespace: uberon
def: "The supraglenoid tubercle is a region of the scapula to which the long head of the biceps brachii muscle attaches." [Wikipedia:Supraglenoid_tubercle]
synonym: "supraglenoid tuberosity" EXACT [FMA:23263]
xref: FMA:23263
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0005813 {source="FMA"} ! tubercle
relationship: part_of UBERON:0006633 ! coracoid process

[Term]
id: UBERON:0010801
name: calcaneum pre-cartilage condensation
namespace: uberon
synonym: "calcaneous pre-cartilage condensation" EXACT []
xref: EMAPA:17736
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010695 ! mesenchyme of tarsal region
relationship: part_of UBERON:0009879 ! tarsal skeleton

[Term]
id: UBERON:0010842
name: calcaneum cartilage condensation
namespace: uberon
synonym: "calcaneous cartilage condensation" EXACT []
xref: EMAPA:18143
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010695 ! mesenchyme of tarsal region
relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation
relationship: part_of UBERON:0009879 ! tarsal skeleton

[Term]
id: UBERON:0010843
name: clavicle cartilaginous condensation
namespace: uberon
comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4]
xref: EMAPA:18342
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001105 ! clavicle
relationship: develops_from UBERON:0010844 ! clavicle pre-cartilage condensation
relationship: develops_into UBERON:0001105 ! clavicle
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle

[Term]
id: UBERON:0010844
name: clavicle pre-cartilage condensation
namespace: uberon
comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4]
xref: EMAPA:18026
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001105 ! clavicle
relationship: develops_into UBERON:0001105 ! clavicle
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle

[Term]
id: UBERON:0010846
name: radius pre-cartilage condensation
namespace: uberon
comment: Editor notes: still to decide whether this is a distinct pre-cartilage condensation
xref: EHDAA2:0001586
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001423 ! radius bone
relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation
relationship: develops_into UBERON:0001423 ! radius bone
relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton

[Term]
id: UBERON:0010847
name: ulna pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002100
xref: EHDAA:6226
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001424 ! ulna
relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation
relationship: develops_into UBERON:0001424 ! ulna
relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton

[Term]
id: UBERON:0010848
name: radius-ulna cartilage condensation
namespace: uberon
comment: AO notes: note that this is not represented as a single unit in EHDAA2
synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711]
xref: EMAPA:17711
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation
relationship: part_of UBERON:0003327 {source="EMAPA"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton

[Term]
id: UBERON:0010849
name: tibia cartilaginous condensation
namespace: uberon
xref: EMAPA:18155
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0000979 ! tibia
relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation
relationship: develops_into UBERON:0000979 ! tibia
relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton

[Term]
id: UBERON:0010850
name: tibia pre-cartilage condensation
namespace: uberon
xref: EHDAA2:0002036
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0000979 ! tibia
relationship: develops_into UBERON:0000979 ! tibia
relationship: part_of UBERON:0005259 {source="EHDAA2"} ! lower leg mesenchyme
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton

[Term]
id: UBERON:0010851
name: fibula cartilaginous condensation
namespace: uberon
synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154]
synonym: "fibular cartilage condensation" EXACT [EMAPA:18154]
xref: EMAPA:18154
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001446 ! fibula
relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation
relationship: develops_into UBERON:0001446 ! fibula
relationship: part_of UBERON:0001441 ! hindlimb skeleton
relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme

[Term]
id: UBERON:0010852
name: fibula pre-cartilage condensation
namespace: uberon
synonym: "fibulal pre-cartilage condensation" EXACT []
synonym: "fibular pre-cartilage condensation" EXACT []
xref: EHDAA2:0000509
xref: EHDAA:6196
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001446 ! fibula
relationship: develops_into UBERON:0001446 ! fibula
relationship: part_of UBERON:0001441 ! hindlimb skeleton
relationship: part_of UBERON:0005259 {source="EHDAA2"} ! lower leg mesenchyme

[Term]
id: UBERON:0010853
name: capitulum of humerus
namespace: uberon
def: "In human anatomy of the arm, the lateral portion of the articular surface of the humerus consists of a smooth, rounded eminence, named the capitulum of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone. In birds, where forelimb anatomy has adaptation for flight, its functional if not ontogenetic equivalent is the dorsal condyle of the humerus." [Wikipedia:Capitulum_of_the_humerus]
comment: TODO - check AAO
synonym: "capitellum" RELATED [Wikipedia:Capitulum_of_the_humerus]
synonym: "capitulum" RELATED [AAO:0010262]
synonym: "capitulum of humerus" RELATED [Wikipedia:Capitulum_of_the_humerus]
synonym: "dorsal condyle of the humerus" RELATED SENSU [Wikipedia:Capitulum_of_the_humerus]
synonym: "humeral capitulum" EXACT [FMA:23373]
xref: AAO:0010262
xref: FMA:23373
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0009988 {source="FMA"} ! condyle of humerus

[Term]
id: UBERON:0010856
name: patagium
namespace: uberon
def: "." [http://www.brown.edu/Departments/EEB/EML/background/wing_anatomy.htm, Wikipedia:Patagium]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000023 ! wing
is_a: UBERON:0000094 ! membrane organ

[Term]
id: UBERON:0010858
name: inter limb-segment region
namespace: uberon
comment: Examples - region between digits in a human embryo; segments of a bat's patagium
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000475 ! organism subdivision
relationship: connected_to UBERON:0002529 {cardinality="2"} ! limb segment

[Term]
id: UBERON:0010868
name: uropropatagium
namespace: uberon
def: "the membrane that stretches between the legs of bats, used for flight, and in the case of insect-eating bats, for catching prey." [Wikipedia:Interfemoral_membrane]
synonym: "interfemoral membrane" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010858 ! inter limb-segment region
relationship: connected_to UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0010856 ! patagium

[Term]
id: UBERON:0010869
name: calcar
namespace: uberon
def: "a spur of cartilage arising from inner side of ankle and running along part of outer interfemoral membrane in bats" [Wikipedia:Calcar]
comment: Function notes: to help spread the interfemoral membrane which is part of the wing membrane between the tail and the hind legs.
synonym: "calcaneum" RELATED INCONSISTENT [Wikipedia:Calcar]
synonym: "calcar spur" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0010868 ! uropropatagium

[Term]
id: UBERON:0010879
name: tusk
namespace: uberon
def: "Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal's sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical openings of the roots of the teeth" [Wikipedia:Tusk]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001091 ! calcareous tooth

[Term]
id: UBERON:0010881
name: limb bone cartilaginous condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005863 ! cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0002428 ! limb bone
relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation
relationship: develops_into UBERON:0002428 ! limb bone
relationship: part_of UBERON:0002091 ! entire appendicular skeleton

[Term]
id: UBERON:0010882
name: limb bone pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005866 ! pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0002428 ! limb bone
relationship: develops_into UBERON:0002428 ! limb bone
relationship: part_of UBERON:0002091 ! entire appendicular skeleton

[Term]
id: UBERON:0010883
name: forelimb bone cartilaginous condensation
namespace: uberon
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003859 ! forelimb mesenchyme
is_a: UBERON:0010881 ! limb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0008962 ! forelimb bone
relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation
relationship: develops_into UBERON:0008962 ! forelimb bone
relationship: part_of UBERON:0001440 ! forelimb skeleton

[Term]
id: UBERON:0010884
name: forelimb bone pre-cartilage condensation
namespace: uberon
subset: grouping_class
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003859 ! forelimb mesenchyme
is_a: UBERON:0010882 ! limb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0008962 ! forelimb bone
relationship: develops_into UBERON:0008962 ! forelimb bone
relationship: part_of UBERON:0001440 ! forelimb skeleton

[Term]
id: UBERON:0010885
name: hindlimb bone cartilaginous condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003860 ! hindlimb mesenchyme
is_a: UBERON:0010881 ! limb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0003464 ! hindlimb bone
relationship: develops_from UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0003464 ! hindlimb bone
relationship: part_of UBERON:0001441 ! hindlimb skeleton

[Term]
id: UBERON:0010886
name: hindlimb bone pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003860 ! hindlimb mesenchyme
is_a: UBERON:0010882 ! limb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0003464 ! hindlimb bone
relationship: develops_into UBERON:0003464 ! hindlimb bone
relationship: part_of UBERON:0001441 ! hindlimb skeleton

[Term]
id: UBERON:0010889
name: ectethmoid
namespace: uberon
def: "either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit " [http://www.merriam-webster.com/medical/ectethmoid]
comment: Taxon notes: In avians, the mesethmoid supports upper beak formation
synonym: "dorsal nasal capsule" EXACT [PMID:21270050]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001679 ! ethmoid

[Term]
id: UBERON:0010890
name: pelvic complex muscle
namespace: uberon
def: "Muscles of the pelvic girdle, hindlimb or pelvic fin." [UBERON:cjm]
synonym: "lower limb muscle" RELATED INCONSISTENT [FMA:9622]
synonym: "muscle of lower limb" RELATED INCONSISTENT [FMA:9622]
synonym: "pelvic girdle or hind limb muscle" NARROW [UBERON:cjm]
synonym: "pelvic girdle or posterior limb muscle" NARROW [UBERON:cjm]
xref: AAO:0000218
xref: FMA:9622
xref: MA:0000663
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0010709 ! pelvic complex
relationship: part_of UBERON:0010709 ! pelvic complex

[Term]
id: UBERON:0010891
name: pectoral complex muscle
namespace: uberon
def: "A muscle of a pectoral girdle, pectoral fin or anterior limb." [UBERON:cjm]
synonym: "muscle of upper limb" NARROW INCONSISTENT [FMA:9621]
synonym: "upper limb muscle" NARROW INCONSISTENT [FMA:9621]
xref: AAO:0010687
xref: FMA:9621
xref: MA:0000615
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0010708 ! pectoral complex
relationship: part_of UBERON:0010708 ! pectoral complex

[Term]
id: UBERON:0010892
name: mesethmoid
namespace: uberon
def: "A bone or cartilage in the center of the ethmoid region of the vertebrate skull; usually constitutes the greater portion of the nasal septum." []
synonym: "ventral nasal capsule" EXACT [PMID:21270050]
xref: AAO:0000303
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001679 ! ethmoid

[Term]
id: UBERON:0010894
name: keratinous tooth
namespace: uberon
comment: The hagfish's jawless mouth contains two parallel rows of pointed keratinous teeth
subset: cyclostome_subset
synonym: "horny denticle" EXACT [http://tolweb.org/Hyperoartia]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003913 ! tooth-like structure

[Term]
id: UBERON:0010896
name: piston cartilage
namespace: uberon
comment: Composition notes: composed of lamprin, an elastin-like protein, unique to lampreys
subset: cyclostome_subset
synonym: "lamprey tongue" RELATED []
synonym: "lingual cartilage" EXACT []
synonym: "piston" RELATED []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002418 ! cartilage tissue

[Term]
id: UBERON:0010898
name: gastralium
namespace: uberon
def: "Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column." [VAO:0000127, Wikipedia:Gastralium]
comment: hese bones may have been derived from the ventral scales found in animals like rhipidistians, labyrinthodonts, and Acanthostega, and may be related to ventral elements of turtle plastrons[WP]
synonym: "abdominal rib" EXACT [VAO:curator]
synonym: "belly rib" EXACT [VAO:curator]
synonym: "gastralia" EXACT PLURAL [VAO:0000127]
xref: VAO:0000127
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0005172 ! abdomen organ
is_a: UBERON:0008907 {source="VAO"} ! dermal bone
relationship: part_of UBERON:0006635 {source="Wikipedia"} ! anterior abdominal wall

[Term]
id: UBERON:0010900
name: tarsometatarsus cartilaginous condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0008195 ! tarsometatarsus
relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation
relationship: develops_into UBERON:0008195 ! tarsometatarsus
relationship: part_of UBERON:0001445 ! skeleton of foot

[Term]
id: UBERON:0010901
name: tarsometatarsus pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0008195 ! tarsometatarsus
relationship: develops_into UBERON:0008195 ! tarsometatarsus
relationship: part_of UBERON:0001445 ! skeleton of foot

[Term]
id: UBERON:0010902
name: tibiotarsus cartilaginous condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0008194 ! tibiotarsus
relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation
relationship: develops_into UBERON:0008194 ! tibiotarsus
relationship: part_of UBERON:0001441 ! hindlimb skeleton

[Term]
id: UBERON:0010903
name: tibiotarsus pre-cartilage condensation
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0008194 ! tibiotarsus
relationship: develops_into UBERON:0008194 ! tibiotarsus
relationship: part_of UBERON:0001441 ! hindlimb skeleton

[Term]
id: UBERON:0010904
name: pectoral fin scapula
namespace: uberon
def: "Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:0000583]
comment: Alternate definition: A scapula that is connected to a pectoral fin
synonym: "teleost scapula" RELATED []
xref: TAO:0000583
xref: ZFA:0000583
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006849 ! scapula
relationship: develops_from UBERON:0004753 {source="ZFA"} ! scapulocoracoid

[Term]
id: UBERON:0010905
name: clavicle bone primordium
namespace: uberon
comment: lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB]
synonym: "calvicle primordium" EXACT []
xref: EHDAA2:0000254
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002514 {source="EHDAA2"} ! intramembranous bone
is_a: UBERON:0007829 ! pectoral girdle bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: has_developmental_contribution_from UBERON:0002342 {editor="mah", notes="shown in mouse", source="PMC1352163"} ! neural crest
relationship: part_of UBERON:0007831 {source="EHDAA2"} ! skeleton of pectoral girdle

[Term]
id: UBERON:0010907
name: parafibula
namespace: uberon
def: "third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians" [http://palaeos.com/vertebrates/glossary/glossaryP.html#P]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005893 ! leg bone

[Term]
id: UBERON:0010908
name: paraglossale
namespace: uberon
def: "in the avian hyoid apparatus, the arrowhead-shaped bone which forms the base of the tongue" [http://palaeos.com/vertebrates/glossary/glossaryP.html#P]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! viscerocranium bone
relationship: part_of UBERON:0010272 ! hyoid apparatus

[Term]
id: UBERON:0010910
name: opisthotic
namespace: uberon
def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html]
comment: Taxon notes:  teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece[palaeos]
xref: AAO:0010835
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000032 ! cranial structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule

[Term]
id: UBERON:0010911
name: ossicle
namespace: uberon
def: "Skeletal element that is small dermal or endochondral bone." [VAO:0000132]
comment: Ossicles are composed of a combination skeletal tissues, including bone, calcified cartilage, hyaline cartilage, etc, and exhibit variable development across species. Ossicles are not necessarily jointed, and examples include the menisci of synovial joints, "Panda's thumb" (radial sesamoid), cardiac skeletal elements, sclerotic bones, middle ear ossicles, and sesamoids.
xref: VAO:0000132
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001474 {source="VAO"} ! bone
is_a: UBERON:0002513 ! endochondral bone
relationship: develops_from UBERON:0002513 {source="VAO"} ! endochondral bone

[Term]
id: UBERON:0010912
name: subdivision of skeleton
namespace: uberon
def: "Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003]
comment: AO notes: VAO def logically wrong
synonym: "skeletal subdivision" EXACT [VAO:0000042]
synonym: "subdivision of skeleton (in vivo)" RELATED [FMA:23879]
xref: FMA:23879
xref: SCTID:129140006
xref: VAO:0000042
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000477 {source="VAO"} ! anatomical cluster
relationship: part_of UBERON:0000075 {source="UBERONREF:0000003"} ! subdivision of skeletal system
relationship: part_of UBERON:0004288 {source="VAO"} ! skeleton

[Term]
id: UBERON:0010913
name: vertebral element
namespace: uberon
def: "Skeletal element that forms around the notochord and is part of the vertebral column." [VAO:0000184]
comment: Note that Uberon includes a distinct subclass for bony vertebra
xref: VAO:0000184
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0005174 ! back organ
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column

[Term]
id: UBERON:0010927
name: thyroepiglotticus
namespace: uberon
def: "A considerable number of the fibers of the ThyreoarytC&noideus are prolonged into the aryepiglottic fold, where some of them become lost, while others are continued to the margin of the epiglottis. They have received a distinctive name, Thyreoepiglotticus or Thyroepiglottic, and are sometimes described as a separate muscle." [Wikipedia:Thyroepiglottic_muscle]
comment: AO notes: not a distinct muscle in FMA
synonym: "pars thyroepiglottica (musculus thyroarytenoideus)" EXACT [FMA:46594]
synonym: "pars thyroepiglottica musculus thyroarytenoidei" EXACT [FMA:TA]
synonym: "thyro-epiglottic part of thyro-arytenoid" EXACT [FMA:46594]
synonym: "thyroepiglottic muscle" EXACT [FMA:46594]
xref: FMA:46594
xref: ncithesaurus:Thyroepiglottic_Muscle
xref: SCTID:244819001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx
relationship: part_of UBERON:0008576 {source="FMA"} ! thyro-arytenoid

[Term]
id: UBERON:0010928
name: cricopharyngeus
namespace: uberon
comment: muscle belly
synonym: "cricopharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46661]
synonym: "cricopharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46661]
synonym: "cricopharyngeal part of inferior pharyngeal constrictor muscle" EXACT []
synonym: "cricopharyngeus muscle" RELATED []
synonym: "pars cricopharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46661]
synonym: "pars cricopharyngea musculus constrictoris pharyngis inferioris" EXACT [FMA:TA]
xref: FMA:46661
xref: SCTID:244804002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor

[Term]
id: UBERON:0010929
name: stapedius pre-muscle condensation
namespace: uberon
xref: EHDAA2:0001909
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
is_a: UBERON:0009506 ! associated mesenchyme of middle ear
relationship: develops_from UBERON:0009506 {source="EHDAA2"} ! associated mesenchyme of middle ear
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear

[Term]
id: UBERON:0010930
name: interhyoideus
namespace: uberon
comment: Usage notes: may be obsoleted. Muscle between hyoid arches in fish; Taxon notes: the [mammalian] interhyoideus is homologous with the simple interhyoideus of early stages of amphibia[Edgeworth, 1935].  most extant actinopterygians part of the interhyoideus separates into a distinct muscle during development, the hyohyoideus - http://www.biomedcentral.com/1471-213X/8/24/
synonym: "interhyoideus muscle" EXACT []
xref: AAO:0010649
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005493 ! hyoid muscle

[Term]
id: UBERON:0010931
name: intermandibularis
namespace: uberon
def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [ZFA:0000369]
synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12]
synonym: "intermandibularis muscle" EXACT []
xref: AAO:0010647
xref: TAO:0000369
xref: ZFA:0000369
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0010932
name: crico-arytenoid muscle
namespace: uberon
def: "Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle" [Wikipedia:Cricoarytenoid_muscle]
synonym: "crico-arytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle]
synonym: "cricoarytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle]
synonym: "cricoarytenoid muscle" EXACT [Wikipedia:Cricoarytenoid_muscle]
synonym: "cricoarytenoideus" EXACT []
xref: MA:0002283
xref: ncithesaurus:Cricoarytenoid_Muscle
xref: SCTID:244811003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx

[Term]
id: UBERON:0010933
name: orbicularis oris muscle
namespace: uberon
def: "In human anatomy, the orbicularis oris muscle is the sphincter muscle around the mouth. This muscle closes the mouth and puckers the lips when it contracts." [Wikipedia:Orbicularis_oris_muscle]
synonym: "incisivii labii inferioris" RELATED [Wikipedia:Orbicularis_oris_muscle]
synonym: "incisivii labii superioris" RELATED [Wikipedia:Orbicularis_oris_muscle]
synonym: "nasolabialis muscle" RELATED [Wikipedia:Orbicularis_oris_muscle]
synonym: "orbicularis oris" EXACT [FMA:46841]
synonym: "orbicularis oris" RELATED [Wikipedia:Orbicularis_oris_muscle]
xref: FMA:46841
xref: SCTID:244749008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001577 {source="FMA"} ! muscle of face

[Term]
id: UBERON:0010934
name: panniculus carnosus
namespace: uberon
def: "a part of the subcutaneous tissues in the study of animal anatomy. It is a layer of striated muscle deep to the panniculus adiposus" [Wikipedia:Panniculus_carnosus]
synonym: "panniculus carnosus group" EXACT [EMAPA:18189]
xref: EMAPA:18189
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0002072 ! hypodermis

[Term]
id: UBERON:0010935
name: tensor tympani pre-muscle condensation
namespace: uberon
xref: EHDAA2:0002002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
is_a: UBERON:0009506 ! associated mesenchyme of middle ear
relationship: develops_from UBERON:0009506 {source="EHDAA2"} ! associated mesenchyme of middle ear
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear

[Term]
id: UBERON:0010936
name: thyropharyngeus
namespace: uberon
comment: muscle belly
synonym: "pars thyropharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46658]
synonym: "pars thyropharyngea musculus constrictoris pharyngis inferioris" EXACT [FMA:TA]
synonym: "thyropharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46658]
synonym: "thyropharyngeal part of inferior constrictor pharyngeus muscle" EXACT []
synonym: "thyropharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46658]
xref: FMA:46658
xref: SCTID:244805001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor

[Term]
id: UBERON:0010937
name: salpingopharyngeus muscle
namespace: uberon
def: "The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus." [Wikipedia:Salpingopharyngeus_muscle]
synonym: "salpingopharyngeus" RELATED [Wikipedia:Salpingopharyngeus_muscle]
xref: FMA:46665
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle

[Term]
id: UBERON:0010938
name: muscle belly
namespace: uberon
synonym: "belly" EXACT [FMA:9719]
synonym: "venter" EXACT [FMA:TA]
xref: FMA:9719
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001630 {source="FMA"} ! muscle organ

[Term]
id: UBERON:0010939
name: zygomaticomandibularis muscle
namespace: uberon
synonym: "zygomaticomandibularis muscle" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ

[Term]
id: UBERON:0010940
name: belly of digastric
namespace: uberon
synonym: "digastric belly" EXACT [FMA:46297]
xref: FMA:46297
xref: SCTID:360772008
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010938 ! muscle belly
intersection_of: UBERON:0010938 ! muscle belly
intersection_of: part_of UBERON:0001562 ! digastric
relationship: part_of UBERON:0001562 ! digastric

[Term]
id: UBERON:0010943
name: anterior belly of digastric
namespace: uberon
synonym: "anterior belly of digastric muscle" EXACT []
synonym: "digastricus anterior" EXACT []
synonym: "digastricus, venter rostralis" EXACT []
synonym: "venter anterior (musculus digastricus)" EXACT [FMA:46302]
xref: FMA:46302
xref: SCTID:141804004
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010940 ! belly of digastric

[Term]
id: UBERON:0010944
name: posterior belly of digastric
namespace: uberon
synonym: "digastricus posterior" EXACT []
synonym: "digastricus, venter caudalis" EXACT []
synonym: "posterior belly of digastric muscle" EXACT []
xref: FMA:46303
xref: SCTID:141905002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010940 ! belly of digastric

[Term]
id: UBERON:0010945
name: jugulohyoideus muscle
namespace: uberon
def: "runs from the processus jugularis to the os stylohyoideum; nnervated with the ramus jugulohyoideus from the nervus facialis" [PMID:7839797]
synonym: "jugulohyoid" RELATED []
synonym: "jugulohyoideus" RELATED []
synonym: "musculus jugulohyoideus" RELATED []
synonym: "musculus occipitohyoideus" RELATED []
synonym: "occipitohyoid" RELATED []
synonym: "occipitohyoideus" RELATED []
xref: FMA:9625
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002377 ! muscle of neck

[Term]
id: UBERON:0010946
name: occipitofrontalis muscle
namespace: uberon
def: "The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone. Some sources consider the occipitofrontalis to be a structure consisting of two distinct muscles, the Frontalis and the occipitalis. However, Terminologia Anatomica currently classifies it as a single muscle." [Wikipedia:Occipitofrontalis_muscle]
comment: zone of muscle in FMA
synonym: "epicranius" RELATED [Wikipedia:Occipitofrontalis_muscle]
synonym: "occipitofrontalis" RELATED [Wikipedia:Occipitofrontalis_muscle]
xref: FMA:9624
xref: ncithesaurus:Occipito-frontalis_Muscle
xref: SCTID:361811007
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head

[Term]
id: UBERON:0010947
name: occipitalis
namespace: uberon
synonym: "occipital belly of occipitofrontalis" EXACT [FMA:46758]
synonym: "occipital part of occipitofrontalis" EXACT [FMA:46758]
synonym: "venter occipitalis (musculus occipitofrontalis)" EXACT [FMA:46758]
synonym: "venter transversa musculus occipitofrontalis occipitalis" EXACT [FMA:TA]
xref: FMA:46758
xref: SCTID:21405000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010938 ! muscle belly
relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle

[Term]
id: UBERON:0010948
name: cleidooccipital muscle
namespace: uberon
comment: Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33%
synonym: "cleido-occipitalis" EXACT []
synonym: "cleido-occipitalis muscle" EXACT []
xref: MA:0002276
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0010949
name: sternooccipital muscle
namespace: uberon
xref: MA:0002385
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002377 ! muscle of neck

[Term]
id: UBERON:0010950
name: styloauricular muscle
namespace: uberon
def: "An occasional small muscle extending from the root of the styloid process to the cartilage of the meatus of the ear" [http://www.mondofacto.com/facts/dictionary?musculus+styloauricularis]
synonym: "mandibulo-auricularis" EXACT []
synonym: "mandibulo-auricularis muscle" EXACT []
synonym: "stylo-auricularis" EXACT []
synonym: "stylo-auricularis muscle" EXACT []
synonym: "styloauricularis" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head

[Term]
id: UBERON:0010951
name: interscutular muscle
namespace: uberon
def: "a muscle that attaches to the base of the ear and to the middle of the skull" [PMID:19209956]
synonym: "interscutularis" EXACT []
synonym: "musculus interscutularis" EXACT []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0002376 ! muscle of head

[Term]
id: UBERON:0010952
name: frontalis
namespace: uberon
def: "The Frontalis muscle is thin, of a quadrilateral form, and intimately adherent to the superficial fascia. It is broader than the Occipitalis and its fibers are longer and paler in color. It is located on the front of the head. It has no bony attachments. Its medial fibers are continuous with those of the Procerus; its immediate fibers blend with the Corrugator and Orbicularis oculi, thus attached to the skin of the eyebrows; and its lateral fibers are also blended with the latter muscle over the zygomatic process of the frontal bone. In the eyebrows, its primary function is to lift them (thus opposing the orbital portion of the orbicularis), especially when looking up. It also acts when a view is too distant or dim. From these attachments the fibers are directed upward, and join the galea aponeurotica below the coronal suture. The medial margins of the Frontales are joined together for some distance above the root of the nose; but between the Occipitales there is a considerable, though variable, interval, occupied by the galea aponeurotica. It could be part of occipitofrontalis muscle." [Wikipedia:Frontalis_muscle]
synonym: "frontal belly of occipitofrontalis" EXACT [FMA:46757]
synonym: "frontal belly of occipitofrontalis muscle" RELATED [Wikipedia:Frontalis_muscle]
synonym: "frontal part of occipitofrontalis" EXACT [FMA:46757]
synonym: "orbito-temporo-auricularis" EXACT [PMID:18657257]
synonym: "venter frontalis (musculus occipitofrontalis)" EXACT [FMA:46757]
synonym: "venter frontalis musculus occipitofrontalis" EXACT [FMA:TA]
xref: FMA:46757
xref: SCTID:368680005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010938 ! muscle belly
relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle

[Term]
id: UBERON:0010953
name: nasalis muscle
namespace: uberon
def: "The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into \"Compressor nasalis\" and \"Dilator nasalis\"." [Wikipedia:Nasalis_muscle]
synonym: "compressor naris" RELATED [Wikipedia:Nasalis_muscle]
synonym: "compressor narium minor" RELATED [Wikipedia:Nasalis_muscle]
synonym: "compressor nasi" RELATED [Wikipedia:Nasalis_muscle]
synonym: "nasalis" EXACT [FMA:46770]
xref: FMA:46770
xref: SCTID:244732001
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle

[Term]
id: UBERON:0010954
name: ceratohyoideus
namespace: uberon
def: "A muscle connecting the hyoidean and branchial arches[unvetted]" [http://www.wordnik.com/words/ceratohyoideus]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000933 ! pharyngeal muscle

[Term]
id: UBERON:0010955
name: trapezius pre-muscle mass
namespace: uberon
xref: EHDAA2:0002079
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0010956
name: pterygopharyngeal part of superior pharyngeal constrictor
namespace: uberon
synonym: "pars pterygopharyngea (musculus constrictor pharyngis superior)" EXACT [FMA:46638]
synonym: "pterygopharyngeal part of superior constrictor pharyngeus" EXACT [FMA:46638]
synonym: "pterygopharyngeus" RELATED []
xref: FMA:46638
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0006329 {source="FMA"} ! superior pharyngeal constrictor

[Term]
id: UBERON:0010958
name: arytenoid muscle
namespace: uberon
def: "A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts." [Wikipedia:Arytenoid_muscle]
comment: todo - check child relationships
synonym: "aryepiglotticus muscle" RELATED [Wikipedia:Arytenoid_muscle]
synonym: "arytaenoideus" RELATED [Wikipedia:Arytenoid_muscle]
synonym: "arytaenoideus muscle" RELATED [Wikipedia:Arytenoid_muscle]
xref: ncithesaurus:Arytenoid_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0006328 ! laryngeal intrinsic muscle

[Term]
id: UBERON:0010959
name: craniocervical muscle
namespace: uberon
synonym: "muscle of head and neck" RELATED []
synonym: "muscle of head or neck" EXACT []
xref: ncithesaurus:Head_and_Neck_Muscle
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0007811 ! craniocervical region

[Term]
id: UBERON:0010961
name: erector spinae pre-muscle mass
namespace: uberon
xref: EHDAA2:0000455
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle

[Term]
id: UBERON:0010962
name: extensor pre-muscle mass
namespace: uberon
xref: EHDAA2:0000459
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group

[Term]
id: UBERON:0010963
name: trunk and cervical myotome group
namespace: uberon
comment: isa row in EHDAA2
xref: EHDAA2:0003425
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003082 ! myotome
relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme

[Term]
id: UBERON:0010970
name: intercostal pre-muscle mass
namespace: uberon
xref: EHDAA2:0000843
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle

[Term]
id: UBERON:0010974
name: external intercostal pre-muscle mass
namespace: uberon
xref: EHDAA2:0000467
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass

[Term]
id: UBERON:0010975
name: external oblique pre-muscle mass
namespace: uberon
xref: EHDAA2:0000470
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0002461 {source="EHDAA2"} ! anterior abdominal wall muscle

[Term]
id: UBERON:0010977
name: flexor pre-muscle mass
namespace: uberon
xref: EHDAA2:0000543
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group

[Term]
id: UBERON:0010981
name: internal intercostal pre-muscle mass
namespace: uberon
xref: EHDAA2:0000876
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group

[Term]
id: UBERON:0010982
name: latissimus dorsi pre-muscle mass
namespace: uberon
xref: EHDAA2:0000933
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0010983
name: levator scapulae pre-muscle mass
namespace: uberon
xref: EHDAA2:0000993
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0010984
name: pectoral pre-muscle mass
namespace: uberon
xref: EHDAA2:0001423
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0010985
name: rhomboid pre-muscle mass
namespace: uberon
xref: EHDAA2:0001636
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0010986
name: serratus anterior pre-muscle mass
namespace: uberon
xref: EHDAA2:0001833
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle

[Term]
id: UBERON:0010987
name: sterno-mastoid pre-muscle mass
namespace: uberon
xref: EHDAA2:0001913
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0002376 {source="EHDAA2"} ! muscle of head

[Term]
id: UBERON:0010988
name: teres major pre-muscle mass
namespace: uberon
xref: EHDAA2:0002005
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle

[Term]
id: UBERON:0010989
name: transverospinalis pre-muscle mass
namespace: uberon
xref: EHDAA2:0002076
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group

[Term]
id: UBERON:0010990
name: transversospinales muscle
namespace: uberon
def: "The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum" [Wikipedia:Transversospinales_muscles]
synonym: "deep dorsal muscles" RELATED [Wikipedia:Transversospinales_muscles]
synonym: "musculi transversospinales" RELATED [FMA:TA]
synonym: "transverospinalis" EXACT [EHDAA2:0002075]
synonym: "transversospinal group of muscles" RELATED [Wikipedia:Transversospinales_muscles]
synonym: "transversospinales" RELATED [FMA:71304]
synonym: "transversospinales muscle group" RELATED [FMA:71304]
xref: EHDAA2:0002075
xref: EHDAA:9465
xref: FMA:71304
xref: SCTID:244866002
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0003897 {source="EHDAA2"} ! axial muscle
relationship: develops_from UBERON:0010989 {source="EHDAA2"} ! transverospinalis pre-muscle mass

[Term]
id: UBERON:0010993
name: subscapularis pre-muscle mass
namespace: uberon
xref: EMAPA:17750
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group

[Term]
id: UBERON:1000000
name: chin ventral margin
namespace: uberon
def: "Subdivision of the head consisting of the area along the lower edge of the chin." [UBERON:EJS]
subset: phenotype_rcn
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0008199 ! chin

[Term]
id: UBERON:1000021
name: skin of face
namespace: uberon
def: "A zone of skin that is part of the face." [UBERON:EJS]
subset: phenotype_rcn
synonym: "facial skin" RELATED []
xref: ncithesaurus:Skin_of_the_Face
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: UBERON:0001084 ! skin of head
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
created_by: eriks
creation_date: 2012-02-05T05:23:01Z

[Typedef]
id: adjacent_to
name: adjacent_to
namespace: uberon
def: "x adjacent_to y iff: x and y share a boundary" []
xref: RO:0002220
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: anterior_to
name: anterior_to
namespace: uberon
def: "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer" [BSPO:cjm]
xref: BSPO:0000096
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true
created_by: cjm
creation_date: 2009-07-31T02:15:46Z

[Typedef]
id: articulates_with
name: articulates with
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: attached_to
name: attached_to
namespace: uberon
comment: FMA:85990
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: branch_of
name: branch_of
namespace: uberon
comment: Source: FMA. Editor note: we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve
xref: FMA:85994
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: part_of ! part_of

[Typedef]
id: channel_for
name: channel for
namespace: uberon
synonym: "carries" BROAD []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: channels_from
name: channels_from
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true

[Typedef]
id: channels_into
name: channels_into
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true

[Typedef]
id: composed_primarily_of
name: composed_primarily_of
namespace: uberon
def: "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y" []
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: has_part ! has part

[Typedef]
id: connected_to
name: connected to
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: connects
name: connects
namespace: uberon
comment: Editors note: this is currently used for both structural relationships (such as between a valve and the chamber it connects) and abstract relationships (anatomical lines and the entities they connect)
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: contains
name: contains
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: continuous_with
name: continuous_with
namespace: uberon
comment: sourced from FMA
xref: FMA:85972
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: developmentally_contributes_to
name: developmentally_contributes_to
namespace: uberon
xref: RO:0002255
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: developmentally_replaces
name: developmentally_replaces
namespace: uberon
xref: RO:0002285
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: develops_from
name: develops_from
namespace: uberon
xref: RO:0002202
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true
is_a: has_developmental_contribution_from ! has developmental contribution from

[Typedef]
id: develops_from_part_of
name: develops_from_part_of
namespace: uberon
xref: RO:0002225
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: develops_from ! develops_from

[Typedef]
id: develops_in
name: develops_in
namespace: uberon
def: "x develops_in y if x is located in x whilst x is developing." []
xref: RO:0002226
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: develops_into
name: develops_into
namespace: uberon
xref: RO:0002203
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
inverse_of: develops_from ! develops_from

[Typedef]
id: directly_develops_from
name: directly_develops_from
namespace: uberon
xref: RO:0002207
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: directly_preceded_by
name: directly_preceded_by
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: preceded_by ! preceded_by

[Typedef]
id: distal_to
name: distal_to
namespace: uberon
def: "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)." [BSPO:cjm]
xref: BSPO:0000097
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: distally_connected_to
name: distally connected to
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: dorsal_to
name: dorsal_to
namespace: uberon
def: "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm]
xref: BSPO:0000098
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true
inverse_of: ventral_to ! ventral_to

[Typedef]
id: encloses
name: encloses
namespace: uberon
def: "x encloses y iff the convex hull formed by x contains all or the majority of y." [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: existence_ends_during
name: existence_ends_during
namespace: uberon
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [UBERON:cjm]
comment: todo - add full axioms to bfo
synonym: "ceases_to_exist_during" EXACT []
xref: BFO:0000069
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: existence_ends_with
name: existence_ends_with
namespace: uberon
def: "Relation between continuant and occurrent, such that c ceases to exist at the end of p." [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: existence_starts_and_ends_during
name: existence_starts_and_ends_during
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: existence_ends_during ! existence_ends_during
is_a: existence_starts_during ! existence_starts_during

[Typedef]
id: existence_starts_during
name: existence_starts_during
namespace: uberon
def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [UBERON:cjm]
synonym: "begins_to_exist_during" EXACT []
xref: BFO:0000068
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: existence_starts_with
name: existence_starts_with
namespace: uberon
def: "Relation between continuant and occurrent, such that c comes into existence at the start of p." [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: finishes
name: finishes
namespace: uberon
def: "Relation between occurrents, shares an end boundary with." [Allen:starts, UBERON:cjm, ZFS:finishes]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: part_of ! part_of

[Typedef]
id: has_developmental_contribution_from
name: has developmental contribution from
namespace: uberon
xref: RO:0002254
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true

[Typedef]
id: has_end
name: has_end
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: has_fused_element
name: has_fused_element
namespace: uberon
def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" []
comment: A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B.
is_metadata_tag: true
is_class_level: true

[Typedef]
id: has_part
name: has part
namespace: uberon
xref: BFO:0000051
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true
inverse_of: part_of ! part_of

[Typedef]
id: has_start
name: has_start
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: homologous_to
name: homologous_to
namespace: uberon
is_metadata_tag: true

[Typedef]
id: immediately_deep_to
name: immediately_deep_to
namespace: uberon
def: "This relation holds when both the deep_to and ajdacent_to relationship similarly hold." [BSPO:cjm]
xref: BSPO:0001107
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: adjacent_to ! adjacent_to

[Typedef]
id: in_distal_side_of
name: in_distal_side_of
namespace: uberon
def: "X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000125
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
inverse_of: in_proximal_side_of ! in_proximal_side_of

[Typedef]
id: in_left_side_of
name: in_left_side_of
namespace: uberon
def: "X left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000120
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: part_of ! part_of
inverse_of: in_right_side_of ! in_right_side_of

[Typedef]
id: in_proximal_side_of
name: in_proximal_side_of
namespace: uberon
def: "X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000124
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: in_right_side_of
name: in_right_side_of
namespace: uberon
def: "X right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000121
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: part_of ! part_of

[Typedef]
id: induced_by
name: induced_by
namespace: uberon
def: "t1 induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T." [GO:0001759]
comment: sources for induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: location_of
name: location_of
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
created_by: cjm
creation_date: 2009-07-30T10:22:21Z

[Typedef]
id: overlaps
name: overlaps
namespace: uberon
def: "A overlaps B if they share some part in common." []
xref: RO:0002131
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
expand_expression_to: "BFO_0000051 some (BFO_0000050 some ?Y)" []

[Typedef]
id: part_of
name: part_of
namespace: uberon
comment: note that all the uses of part_of in this ontology are for proper part of
xref: BFO:0000050
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true

[Typedef]
id: posterior_to
name: posterior_to
namespace: uberon
def: "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail." [BSPO:cjm]
synonym: "caudal_to" NARROW []
xref: BSPO:0000099
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true

[Typedef]
id: preceded_by
name: preceded_by
namespace: uberon
comment: disjoint_from part_of, but this cannot be expressed in OWL2
xref: BFO:0000062
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true

[Typedef]
id: proximal_to
name: proximal_to
namespace: uberon
def: "x proximal_to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm]
xref: BSPO:0000100
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: proximally_connected_to
name: proximally connected to
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: ray_number
name: ray number
namespace: uberon
def: "x ray_number N if and only if (i) x is a ray, and (ii) x is associated with ray number N in a series of phalanges repeated along a radio-ulnar or equivalent axis, with ray_number 1 being the anteriormost ray." [UBERON:cjm]
comment: The correct terminology is yet to be established; in tetrapods 'ray' might mean the mereological sum of the phalanges of a funger plus a metatarsal bone.
property_value: "is_count_of" UBERON:0002544
is_a: repeated_element_number
is_metadata_tag: true

[Typedef]
id: rib_number
name: rib number
namespace: uberon
def: "x rib_number N if and only if (i) x is a rib, and (ii) x is rib number N in a series of ribs repeated along an anterior-posterior axis, with rib_number 1 being the anteriormost rib." [UBERON:cjm]
property_value: "is_count_of" UBERON:0002228
property_value: "preceding_element_is" BSPO:0000096
is_a: repeated_element_number
is_metadata_tag: true

[Typedef]
id: secreted_by
name: secreted_by
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: secretes
name: secretes
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: spatially_disjoint_from
name: spatially_disjoint_from
namespace: uberon
def: "A is spatially_disjoint_from B if they have no parts in common." [SO:cjm]
synonym: "non_overlapping_with" EXACT []
synonym: "shares_no_parts_with" EXACT []
expand_assertion_to: "Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" []
is_metadata_tag: true
is_class_level: true

[Typedef]
id: starts
name: starts
namespace: uberon
def: "Relation between occurrents, shares a start boundary with." [Allen:starts, UBERON:cjm, ZFS:starts]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_a: part_of ! part_of

[Typedef]
id: subdivision_of
name: subdivision of
namespace: uberon
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: supplies
name: supplies
namespace: uberon
def: "relation between an artery and the structure is supplies with blood." []
comment: source: FMA
synonym: "arterial supply of" EXACT [FMA:86003]
xref: FMA:86003
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: surrounded_by
name: surrounded_by
namespace: uberon
def: "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y" [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: surrounds
name: surrounds
namespace: uberon
def: "inverse of surrounded_by" [UBERON:cjm]
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
inverse_of: surrounded_by ! surrounded_by

[Typedef]
id: tributary_of
name: tributary_of
namespace: uberon
comment: taken from the FMA
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

[Typedef]
id: ventral_to
name: ventral_to
namespace: uberon
def: "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm]
xref: BSPO:0000102
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
is_transitive: true

[Typedef]
id: vertebra_number
name: vertebra number
namespace: uberon
def: "x vertebra_number N if and only if (i) x is a vertebra, and (ii) x is vertebra number N in a series of vertebras repeated along an anterior-posterior axis, with vertebra_number 1 being the anteriormost vertebra (also known as the atlas)." [UBERON:cjm]
property_value: "is_count_of" UBERON:0002412
property_value: "preceding_element_is" BSPO:0000096
is_a: repeated_element_number
is_metadata_tag: true