format-version: 1.2 ontology: uberon/subsets/nervous-minimal [Term] id: BFO:0000001 name: entity property_value: BFO:0000179 "entity" xsd:string property_value: BFO:0000180 "Entity" xsd:string property_value: IAO:0000112 "Julius Caesar" xsd:string property_value: IAO:0000112 "the Second World War" xsd:string property_value: IAO:0000112 "Verdi’s Requiem" xsd:string property_value: IAO:0000112 "your body mass index" xsd:string property_value: IAO:0000116 "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81" xsd:string property_value: IAO:0000116 "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000004", comment="per discussion with Barry Smith", seeAlso="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"} property_value: IAO:0000600 "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/001-001"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000002 name: continuant def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." [] is_a: BFO:0000001 ! entity relationship: part_of BFO:0000002 {all_only="true"} ! continuant property_value: BFO:0000179 "continuant" xsd:string property_value: BFO:0000180 "Continuant" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240" xsd:string property_value: IAO:0000116 "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000007"} property_value: IAO:0000600 "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"} property_value: IAO:0000601 "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"} property_value: IAO:0000601 "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"} property_value: IAO:0000601 "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"} property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"} property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"} property_value: IAO:0000602 "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"} property_value: IAO:0000602 "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000004 name: independent continuant def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} comment: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. is_a: BFO:0000002 ! continuant relationship: part_of BFO:0000004 {all_only="true"} ! independent continuant property_value: BFO:0000179 "ic" xsd:string property_value: BFO:0000180 "IndependentContinuant" xsd:string property_value: IAO:0000112 "a chair" xsd:string property_value: IAO:0000112 "a heart" xsd:string property_value: IAO:0000112 "a leg" xsd:string property_value: IAO:0000112 "a molecule" xsd:string property_value: IAO:0000112 "a spatial region" xsd:string property_value: IAO:0000112 "an atom" xsd:string property_value: IAO:0000112 "an orchestra." xsd:string property_value: IAO:0000112 "an organism" xsd:string property_value: IAO:0000112 "the bottom right portion of a human torso" xsd:string property_value: IAO:0000112 "the interior of your mouth" xsd:string property_value: IAO:0000589 "anatomical entity (BFO)" xsd:string property_value: IAO:0000601 "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"} property_value: IAO:0000601 "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"} property_value: IAO:0000602 "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"} property_value: IAO:0000602 "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"} property_value: IAO:0000602 "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000040 name: material entity def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] is_a: BFO:0000004 ! independent continuant property_value: BFO:0000179 "material" xsd:string property_value: BFO:0000180 "MaterialEntity" xsd:string property_value: IAO:0000112 "a flame" xsd:string property_value: IAO:0000112 "a forest fire" xsd:string property_value: IAO:0000112 "a human being" xsd:string property_value: IAO:0000112 "a hurricane" xsd:string property_value: IAO:0000112 "a photon" xsd:string property_value: IAO:0000112 "a puff of smoke" xsd:string property_value: IAO:0000112 "a sea wave" xsd:string property_value: IAO:0000112 "a tornado" xsd:string property_value: IAO:0000112 "an aggregate of human beings." xsd:string property_value: IAO:0000112 "an energy wave" xsd:string property_value: IAO:0000112 "an epidemic" xsd:string property_value: IAO:0000112 "the undetached arm of a human being" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity." xsd:string property_value: IAO:0000116 "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here." xsd:string property_value: IAO:0000600 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"} property_value: IAO:0000601 "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"} property_value: IAO:0000601 "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"} property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"} property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"} property_value: IAO:0000602 "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: CL:0000006 name: neuronal receptor cell subset: cellxgene_subset synonym: "neuronal receptor cell (sensu Animalia)" EXACT [] is_a: CL:0000101 ! sensory neuron [Term] id: CL:0000029 name: neural crest derived neuron synonym: "neuron neural crest derived" EXACT [] is_a: CL:0000540 {is_inferred="true"} ! neuron [Term] id: CL:0000095 name: neuron associated cell subset: cellxgene_subset is_a: CL:0002319 ! neural cell [Term] id: CL:0000099 name: interneuron def: "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions." [GOC:tfm, MESH:D007395] subset: cellxgene_subset subset: human_reference_atlas xref: BTO:0003811 xref: FBbt:00005125 xref: FMA:67313 xref: WBbt:0005113 is_a: CL:0000540 ! neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000100 name: motor neuron def: "An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement." [MESH:D009046, PMID:16875686] subset: cellxgene_subset subset: human_reference_atlas synonym: "motoneuron" EXACT [] xref: BTO:0000312 xref: FBbt:00005123 xref: FMA:83617 xref: WBbt:0005409 is_a: CL:0000527 ! efferent neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000101 name: sensory neuron def: "Any neuron having a sensory function; an afferent neuron conveying sensory impulses." [ISBN:0721662544] xref: BTO:0001037 xref: FBbt:00005124 xref: FMA:84649 xref: MESH:D011984 xref: WBbt:0005759 is_a: CL:0000526 ! afferent neuron [Term] id: CL:0000103 name: bipolar neuron def: "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body." [GOC:tfm, ISBN:0444009442] subset: BDS_subset subset: cellxgene_subset xref: FMA:67282 is_a: CL:0000099 ! interneuron [Term] id: CL:0000104 name: multipolar neuron def: "A neuron with three or more neurites, usually an axon and multiple dendrites." [FMA:67287, GOC:tfm] subset: BDS_subset xref: FMA:67287 is_a: CL:0000540 ! neuron [Term] id: CL:0000107 name: autonomic neuron def: "A neuron whose cell body is within an autonomic ganglion." [GOC:tfm] xref: FMA:80121 is_a: CL:2000032 ! peripheral nervous system neuron [Term] id: CL:0000108 name: cholinergic neuron def: "A neuron that uses acetylcholine as a vesicular neurotransmitter." [GOC:tfm] xref: BTO:0004902 xref: FBbt:00007173 xref: FMA:84796 xref: MESH:D059329 xref: WBbt:0006840 is_a: CL:0000540 ! neuron [Term] id: CL:0000117 name: CNS neuron (sensu Vertebrata) is_a: CL:0000540 ! neuron relationship: part_of UBERON:0001017 ! central nervous system [Term] id: CL:0000118 name: basket cell def: "Basket cells are inhibitory GABAergic interneurons of the brain. In general, dendrites of basket cells are free branching and contain smooth spines. Axons are highly branched. The branched axonal arborizations give rise to basket-like structures that surround the soma of the target cell. Basket cells form axo-somatic synapses, meaning their synapses target somas of other cells." [WikipediaVersioned:Basket_cell&oldid=951703880] subset: BDS_subset is_a: CL:0000104 ! multipolar neuron is_a: CL:0011005 ! GABAergic interneuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 [Term] id: CL:0000119 name: cerebellar Golgi cell def: "Large intrinsic neuron located in the granule layer of the cerebellar cortex that extends its dendrites into the molecular layer where they receive contact from parallel fibers. The axon of the Golgi cell ramifies densely in the granule layer and enters into a complex arrangement with mossy fiber terminals and granule cell dendrites to form the cerebellar glomerulus. Llinas, Walton and Lang. In The Synaptic Organization of the Brain. 5th ed. 2004." [NIFSTD:sao1415726815] subset: cellxgene_subset synonym: "cerebellar Golgi neuron" EXACT [] synonym: "cerebellum Golgi cell" EXACT [] synonym: "Golgi cell" EXACT [] synonym: "Golgi neuron" EXACT [] xref: MESH:D000080906 is_a: CL:4023057 ! cerebellar inhibitory GABAergic interneuron [Term] id: CL:0000120 name: granule cell def: "A neuron of the vertebrate central nervous system that is small in size. This general class includes small neurons in the granular layer of the cerebellar cortex, cerebral cortex neurons that are not pyramidal cells and small neurons without axons found in the olfactory bulb." [https://medical-dictionary.thefreedictionary.com/granule+cell] subset: cellxgene_subset xref: BTO:0003393 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000121 name: Purkinje cell def: "The output neuron of the cerebellar cortex." [MESH:D011689] subset: cellxgene_subset synonym: "cerebellar Purkinje cell" EXACT [] synonym: "cerebellum Purkinje cell" EXACT [] synonym: "Purkinje neuron" EXACT [] synonym: "Purkinje's cell" EXACT [] xref: BTO:0001011 xref: CALOHA:TS-0845 xref: FMA:67969 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) is_a: CL:0000527 ! efferent neuron is_a: CL:1001611 ! cerebellar neuron [Term] id: CL:0000122 name: stellate neuron def: "A neuron that has dendritic processes radiating from the cell body forming a star-like shape." [ISBN:9780123973481] subset: BDS_subset subset: cellxgene_subset xref: BTO:0002316 is_a: CL:0000104 ! multipolar neuron is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000123 name: neuron associated cell (sensu Vertebrata) subset: cellxgene_subset is_a: CL:0000095 ! neuron associated cell [Term] id: CL:0000125 name: glial cell def: "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [MESH:D009457] comment: Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571 subset: cellxgene_subset subset: general_cell_types_upper_slim synonym: "neuroglia" RELATED [] synonym: "neuroglial cell" EXACT [] xref: BTO:0002606 xref: CALOHA:TS-0415 xref: FBbt:00005144 xref: FMA:54536 is_a: CL:0000095 ! neuron associated cell [Term] id: CL:0000126 name: macroglial cell def: "A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together." [GOC:tfm, ISBN:0721662544] subset: cellxgene_subset synonym: "macroglia" RELATED OMO:0003004 [doi:10.1152/physrev.2001.81.2.871] synonym: "macrogliocyte" EXACT [] xref: BTO:0000771 xref: CALOHA:TS-2027 xref: FMA:54538 is_a: CL:0000125 ! glial cell [Term] id: CL:0000127 name: astrocyte def: "A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury." [GOC:dsd, GOC:tfm, http://en.wikipedia.org/wiki/Astrocyte, MESH:D001253, PMID:11746784, PMID:12162730, PMID:12898703, PMID:20942978] comment: Astrocytes are reportedly CD68-negative, CD121a-positive, CD184-positive, CD192-positive, CRF-positive, EGFR-positive, GFAP-positive, GLUT1-positive, MBP-negative, and NGFR-positive. subset: cellxgene_subset subset: human_reference_atlas synonym: "astrocytic glia" EXACT [] xref: BTO:0000099 xref: CALOHA:TS-0060 xref: FMA:54537 is_a: CL:0000126 ! macroglial cell property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000128 name: oligodendrocyte def: "A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system." [http://en.wikipedia.org/wiki/Oligodendrocyte, MESH:D009836] comment: Oligodendrocytes are reportedly MDP-positive and CD4-negative. subset: cellxgene_subset subset: human_reference_atlas synonym: "oligodendroglia" RELATED [] synonym: "OLs" EXACT [PMID:8734446] xref: BTO:0000962 xref: CALOHA:TS-0709 xref: FMA:54540 is_a: CL:0000126 {is_inferred="true"} ! macroglial cell is_a: CL:4023154 ! myelinating glial cell relationship: part_of UBERON:0001017 ! central nervous system property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000165 name: neuroendocrine cell def: "A neuron that is capable of some hormone secretion in response to neuronal signals." [MESH:D055099] comment: The neurosecretory cell is neither an ordinary neuron nor an endocrine cell, but a combination of both. Its neuronal features resemble those of ordinary neurons concerning both structure and function. The production of a visible secretory material marks the neurosecretory neuron as a gland cell, and the fact that extractable cellular products act in the manner of hormones places it in the realm of endocrine elements. \n\nThe modern definition of neurosecretion has evolved to include the release of any neuronal secretory product from a neuron. {xref="https://www.clinicalkey.com/#!/content/book/3-s2.0-B9780323555968000073", xref="PMID:5342440"} subset: cellxgene_subset subset: human_reference_atlas synonym: "neurosecretory cell" RELATED [] synonym: "neurosecretory neuron" RELATED [] xref: BTO:0002691 xref: FBbt:00005130 xref: FMA:83810 is_a: CL:0000527 ! efferent neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000166 name: chromaffin cell def: "A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system." [MESH:D019439] subset: cellxgene_subset synonym: "phaeochromocyte" EXACT [] xref: BTO:0000259 xref: FMA:69263 is_a: CL:0000029 ! neural crest derived neuron is_a: CL:0000568 ! amine precursor uptake and decarboxylation cell [Term] id: CL:0000198 name: pain receptor cell def: "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings." [MESH:D009619] comment: Editor note: request detection of stimulus involved in sensory perception of pain; add develops_from relationship synonym: "nociceptor" EXACT [] {seeAlso="https://meshb.nlm.nih.gov/record/ui?ui=D009619"} synonym: "nocireceptor" EXACT [] {seeAlso="https://www.thefreedictionary.com/nocireceptor"} is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000199 name: mechanoreceptor cell def: "A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [MESH:D008465] synonym: "mechanoreceptor" RELATED [MP:0000972] is_a: CL:0000101 ! sensory neuron [Term] id: CL:0000200 name: touch receptor cell is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000199 ! mechanoreceptor cell is_a: CL:4023168 ! somatosensory neuron [Term] id: CL:0000202 name: auditory hair cell def: "A mechanoreceptor cell of the auditory or vestibular system that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [MESH:D006198, WikipediaVersioned:Hair_cell&oldid=1045345915] comment: In mammals these cells are located in the organ of Corti. synonym: "auditory receptor cell" RELATED [] is_a: CL:0000855 ! sensory hair cell [Term] id: CL:0000207 name: olfactory receptor cell synonym: "odorant receptor cell" EXACT [] synonym: "olfactory receptor neuron" EXACT [] synonym: "olfactory sensory neuron" EXACT [] synonym: "Schultze's cell" EXACT [] xref: BTO:0004185 xref: FMA:67860 xref: MESH:D018034 xref: Wikipedia:Olfactory_receptor_neuron is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000210 name: photoreceptor cell def: "A cell specialized to detect and transduce light." [MESH:D010786] subset: cellxgene_subset xref: BTO:0001060 xref: CALOHA:TS-0868 xref: FMA:86740 is_a: CL:0000006 {is_inferred="true"} ! neuronal receptor cell property_value: http://xmlns.com/foaf/0.1/depiction "https://www.swissbiopics.org/api/image/Photoreceptor_cell.svg" xsd:anyURI [Term] id: CL:0000218 name: myelinating Schwann cell def: "A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons." [GOC:cvs, GOC:tfm, MESH:D012583] synonym: "neurilemmal cell" EXACT [] synonym: "peripheral neuroglial cell" BROAD [] synonym: "Schwann cell" BROAD [] xref: CALOHA:TS-0898 xref: FMA:62121 is_a: CL:0002573 ! Schwann cell is_a: CL:4023154 ! myelinating glial cell [Term] id: CL:0000242 name: Merkel cell def: "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [MESH:D018862] subset: cellxgene_subset subset: human_reference_atlas synonym: "Merkel's cell" EXACT [] xref: FMA:70548 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000287 name: eye photoreceptor cell subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas is_a: CL:0000210 ! photoreceptor cell property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000336 name: adrenal medulla chromaffin cell def: "A cell found within the adrenal medulla that secrete biogenic amine hormones upon stimulation." [GOC:tfm, http://www.britannica.com/EBchecked/topic/6405/adrenal-gland] synonym: "medullary chromaffin cell of adrenal gland" EXACT [FMA:69262] xref: FMA:69262 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell is_a: CL:1000426 ! chromaffin cell of adrenal gland [Term] id: CL:0000339 name: glioblast (sensu Vertebrata) def: "An early neural cell developing from the early ependymal cell of the neural tube." [GOC:tfm, ISBN:0618947256] synonym: "spongioblast" EXACT [] xref: FMA:70564 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) [Term] id: CL:0000397 name: ganglion interneuron subset: cellxgene_subset is_a: CL:0000099 {is_inferred="true"} ! interneuron [Term] id: CL:0000402 name: CNS interneuron def: "An interneuron that has its cell body in a central nervous system." [doi:10.1016/B978-0-12-817424-1.00001-X] comment: Interneurons are commonly described as being only found in the central nervous system. However, in CL we define 'interneuron' more broadly as any neuron that is neither a motor neuron nor a sensory neuron, regardless of its location, so we need this term to refer strictly to interneurons of the central nervous system. subset: human_reference_atlas is_a: CL:0000099 ! interneuron is_a: CL:2000029 ! central nervous system neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000488 name: visible light photoreceptor cell def: "A photoreceptor cell that detects visible light." [GOC:tfm] is_a: CL:0000210 ! photoreceptor cell [Term] id: CL:0000498 name: inhibitory interneuron def: "An interneuron (also called relay neuron, association neuron or local circuit neuron) is a multipolar neuron which connects afferent neurons and efferent neurons in neural pathways. Like motor neurons, interneuron cell bodies are always located in the central nervous system (CNS)." [GOC:tfm, http://en.wikipedia.org/wiki/Interneuron] subset: cellxgene_subset xref: FMA:84776 is_a: CL:0000099 ! interneuron [Term] id: CL:0000526 name: afferent neuron def: "A neuron which conveys sensory information centrally from the periphery." [GOC:tfm, MESH:D009475] subset: human_reference_atlas synonym: "input neuron" EXACT [] xref: FMA:87653 is_a: CL:0000540 ! neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000527 name: efferent neuron def: "A neuron which sends impulses peripherally to activate muscles or secretory cells." [MESH:D009476] synonym: "output neuron" EXACT [] is_a: CL:0000540 ! neuron [Term] id: CL:0000540 name: neuron def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [http://en.wikipedia.org/wiki/Neuron, MESH:D009474] comment: These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. subset: cellxgene_subset subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "nerve cell" EXACT [] xref: BTO:0000938 xref: CALOHA:TS-0683 xref: FBbt:00005106 xref: FMA:54527 xref: VHOG:0001483 xref: WBbt:0003679 is_a: CL:0002319 ! neural cell property_value: http://xmlns.com/foaf/0.1/depiction "https://www.swissbiopics.org/api/image/Neuron_cells.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000555 name: neuronal brush cell subset: cellxgene_subset is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000561 name: amacrine cell def: "Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. They lack large axons." [GOC:tfm, MESH:D025042, WikipediaVersioned:Amacrine_cell&oldid=1023572246] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas synonym: "AC" RELATED OMO:0003000 [doi:10.1038/s41598-020-66092-9] synonym: "ACs" RELATED OMO:0003004 [doi:10.1038/s41598-020-66092-9] synonym: "amacrine neuron" EXACT [] xref: BTO:0004044 xref: FMA:67766 is_a: CL:0000099 ! interneuron is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000568 name: amine precursor uptake and decarboxylation cell def: "A cell that originates in the neural crest, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the cells of the chromaffin system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, lungs, gastrointestinal tract, and pancreas. This cell type concentrates the amino acid precursors of certain amines and decarboxylate them, forming amines that function as regulators and neurotransmitters. This cell type produces substances such as epinephrine, norepinephrine, dopamine, serotonin, enkephalin, somatostatin, neurotensin, and substance P, the actions of which may affect contiguous cells, nearby groups of cells, or distant cells, thus functioning as local or systemic hormones. The name is an acronym for amine precursor uptake and decarboxylation cell." [GOC:tfm, ISBN:0721662544] synonym: "APUD cell" EXACT [] xref: BTO:0003866 xref: FMA:83114 xref: MESH:D001078 is_a: CL:0000165 ! neuroendocrine cell [Term] id: CL:0000573 name: retinal cone cell def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." [MESH:D017949] subset: cellxgene_subset subset: human_reference_atlas synonym: "cone" RELATED [doi:10.1038/s41598-020-66092-9] xref: BTO:0001036 xref: CALOHA:TS-0866 xref: FMA:67748 is_a: CL:0010009 ! camera-type eye photoreceptor cell property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000598 name: pyramidal neuron def: "Pyramidal neurons have a pyramid-shaped soma with a single axon, a large apical dendrite and multiple basal dendrites. The apex and an apical dendrite typically point toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their region. Pyramidal neurons are found in the cerebral cortex, the hippocampus, and the amygdala." [GOC:tfm, MESH:D017966] subset: BDS_subset subset: cellxgene_subset synonym: "projection neuron" EXACT [] synonym: "pyramidal cell" EXACT [] xref: BTO:0003102 xref: FMA:67310 xref: FMA:86775 xref: NIFSTD:sao862606388 is_a: CL:0000104 ! multipolar neuron [Term] id: CL:0000604 name: retinal rod cell def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." [MESH:D017948] subset: cellxgene_subset subset: human_reference_atlas synonym: "rod" RELATED [doi:10.1038/s41598-020-66092-9] xref: BTO:0001024 xref: CALOHA:TS-0870 xref: FMA:67747 is_a: CL:0010009 ! camera-type eye photoreceptor cell property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000609 name: vestibular hair cell def: "A mechanoreceptor located in the acoustic maculae and the semicircular canals that mediates the sense of balance, movement, and head position. The vestibular hair cells are connected to accessory structures in such a way that movements of the head displace their stereocilia. This influences the membrane potential of the cells which relay information about movements via the vestibular part of the vestibulocochlear nerve to the brain stem." [GOC:tfm, MESH:D018069] synonym: "vestibular receptor cell" EXACT [] xref: FMA:62351 is_a: CL:0002374 ! ear hair cell [Term] id: CL:0000617 name: GABAergic neuron def: "A neuron that uses GABA as a vesicular neurotransmitter" [GOC:tfm] subset: cellxgene_subset synonym: "GABA-ergic neuron" EXACT [] xref: FBbt:00007228 xref: FMA:84788 xref: MESH:D059330 xref: WBbt:0005190 is_a: CL:0000540 ! neuron [Term] id: CL:0000626 name: olfactory granule cell def: "A granule cell that has a soma located in an olfactory bulb granule cell layer. An olfactory granule cell is an interneuron that lacks an axon, makes reciprocal dendro-dendritic synapses with mitral cells and tufted cells and is involved in the fine spatio-temporal tuning of the responses of these principal olfactory bulb neurons to odors." [doi:10.1038/s41598-018-27692-8, GOC:mah] comment: Granule cells are the most abundant neuronal population in the olfactory bulb and are continuously renewed throughout life. {xref="doi:10.1038/s41598-018-27692-8"} synonym: "olfactory bulb granule cell" EXACT [doi:10.1038/s41598-018-27692-8] is_a: CL:0000120 ! granule cell is_a: CL:0012001 ! neuron of the forebrain is_a: CL:1001434 ! olfactory bulb interneuron [Term] id: CL:0000636 name: Mueller cell def: "Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer." [GOC:NV, PMID:21911394] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas synonym: "Muller cell" EXACT MISSPELLING [doi:10.21769/BioProtoc.4179] synonym: "Muller glia" EXACT [] synonym: "Müller cell" EXACT [] xref: BTO:0003064 is_a: CL:0000681 ! radial glial cell is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000637 name: chromophil cell of anterior pituitary gland def: "A cell that stains readily in the anterior pituitary gland." [GOC:tfm, ISBN:0618947256] xref: FMA:83089 is_a: CL:0000166 ! chromaffin cell is_a: CL:2000004 ! pituitary gland cell relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: CL:0000638 name: acidophil cell of pars distalis of adenohypophysis def: "An acidophilic chromophil cell that of the anterior pituitary gland." [GOC:tfm] synonym: "acidophil cell of pars anterior of adenohypophysis" EXACT [] synonym: "acidophil of pars anterior of adenohypophysis" EXACT [] synonym: "acidophil of pars distalis of adenohypophysis" EXACT [] synonym: "pituitary alpha cell" EXACT [] xref: FMA:83093 is_a: CL:0000637 ! chromophil cell of anterior pituitary gland relationship: part_of UBERON:0006964 ! pars distalis of adenohypophysis [Term] id: CL:0000642 name: folliculostellate cell def: "An agranular supporting cell of the anterior pituitary (adenohypophysis) that is characterized by a star-like morphology and ability to form follicles. Folliculostellate cells communicate with each other and with endocrine cells via gap junctions." [doi:10.23937/2572-407X.1510006, JB:jb, PMID:10495875, PMID:15961560] comment: Folliculostellate cells are a heterogeneous group of cells rather than a single cell type, with different morphology and gene expression profiles. Due to this heterogeneity, it is unclear if different properties that have been attributed to folliculostellate cells (pluripotent, proliferative, phagocytic) are common in all folliculostellate cells or limited to particular subsets. {xref="doi:10.23937/2572-407X.1510006", xref="PMID:34734454", xref="PMID:31620083", xref="PMID:18287078"} synonym: "folliculo-stellate cell" EXACT [doi:10.23937/2572-407X.1510006] synonym: "FS cell" RELATED OMO:0003000 [PMID:34734454] synonym: "FSC" RELATED OMO:0003000 [doi:10.23937/2572-407X.1510006] synonym: "pituitary folliculostellate cell" EXACT [PMID:34734454] synonym: "Sox2-positive stem cell" RELATED [PMID:34734454] is_a: CL:2000004 ! pituitary gland cell relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: CL:0000652 name: pinealocyte def: "This cell type produces and secretes melatonin and forms the pineal parenchyma. Extending from each cell body, which has a spherical, oval or lobulated mucleus, are one or more tortuous basophilic processes, containing parallel microtubules known as synaptic ribbons. These processes end in expanded terminal buds near capillaries or less, frequently, ependymal cells of the pineal recess. The terminal buds contain granular endoplasmic reticulum, mitochondria and electron-dense cored vesicles, which store monoamines and polypeptide hormones, release of which appears to require sympathetic innervation." [GOC:tfm, http://en.wikipedia.org/wiki/Pinealocyte, ISBN:0517223651, PMID:16687276] xref: BTO:0001068 xref: FMA:83417 is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001905 ! pineal body [Term] id: CL:0000679 name: glutamatergic neuron def: "A neuron that is capable of some neurotansmission by glutamate secretion." [] subset: cellxgene_subset subset: human_reference_atlas xref: FBbt:00100291 xref: WBbt:0006829 is_a: CL:0000540 ! neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000681 name: radial glial cell def: "A cell present in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration." [GOC:dph] comment: Unlike that of mammals, the brain of adult teleost fish exhibits an intense and widespread neurogenic activity as a result of the persistence of\nradial glial cells acting as neural progenitors throughout life. subset: cellxgene_subset synonym: "forebrain radial glial cell" NARROW [] is_a: CL:0000125 ! glial cell [Term] id: CL:0000691 name: stellate interneuron subset: BDS_subset is_a: CL:0000099 ! interneuron is_a: CL:0000104 ! multipolar neuron [Term] id: CL:0000700 name: dopaminergic neuron def: "A neuron that releases dopamine as a neurotransmitter." [GOC:dhill] subset: cellxgene_subset synonym: "dopaminergic cell" EXACT [] xref: BTO:0004032 xref: FBbt:00005131 xref: FMA:84787 xref: MESH:D059290 xref: WBbt:0006746 is_a: CL:4033050 ! catecholaminergic neuron [Term] id: CL:0000706 name: choroid plexus epithelial cell def: "Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord." [GOC:add, GOC:tfm, JB:jb, PMID:9550134] subset: cellxgene_subset subset: human_reference_atlas synonym: "choroid plexus cell" BROAD [DOI:10.1101/2022.10.12.511898] synonym: "epithelial cell of choroid plexus" EXACT [] xref: FMA:70549 is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001886 ! choroid plexus property_value: http://purl.org/dc/terms/date "2023-08-04T08:48:30Z" xsd:dateTime property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000708 name: leptomeningeal cell def: "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [JB:jb] subset: cellxgene_subset synonym: "leptomemingeal cell" RELATED [] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0003210 ! blood-cerebrospinal fluid barrier [Term] id: CL:0000740 name: retinal ganglion cell def: "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve." [GOC:dph] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas synonym: "gangliocyte" EXACT [] synonym: "ganglion cell of retina" EXACT [] synonym: "RGC" RELATED OMO:0003000 [doi:10.1038/s41598-020-66092-9] synonym: "RGCs" RELATED OMO:0003004 [doi:10.1038/s41598-020-66092-9] xref: BTO:0001800 xref: FMA:67765 xref: MESH:D012165 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000745 name: retina horizontal cell def: "A neuron that laterally connects other neurons in the inner nuclear layer of the retina." [ISBN:0195088433] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas synonym: "HC" RELATED OMO:0003000 [doi:10.1038/s41598-020-66092-9] synonym: "HCs" RELATED OMO:0003004 [doi:10.1038/s41598-020-66092-9] synonym: "horizontal cell" EXACT [] xref: BTO:0004120 is_a: CL:0000099 ! interneuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000748 name: retinal bipolar neuron def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer." [PMID:14689473] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas synonym: "BC" RELATED OMO:0003000 [doi:10.1038/s41598-020-66092-9] synonym: "BCs" RELATED OMO:0003004 [doi:10.1038/s41598-020-66092-9] synonym: "BPs" RELATED OMO:0003004 [GSE137537] is_a: CL:0000103 ! bipolar neuron is_a: CL:0000679 ! glutamatergic neuron is_a: CL:0008028 ! visual system neuron is_a: CL:0009004 ! retinal cell property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000752 name: cone retinal bipolar cell def: "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer." [PMID:14689473] is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000847 name: ciliated olfactory receptor neuron def: "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob." [PMID:16841163] synonym: "ciliated olfactory sensory neuron" EXACT [] synonym: "ciliated sensory neuron" EXACT [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000848 name: microvillous olfactory receptor neuron def: "An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli." [PMID:16841163] synonym: "microvillous olfactory sensory neuron" EXACT [] synonym: "microvillous sensory neuron" RELATED [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000850 name: serotonergic neuron def: "A neuron that releases serotonin as a neurotransmitter." [SANBI:mhl] synonym: "5-HT neuron" EXACT [] synonym: "5-hydroxytryptamine neuron" EXACT [] synonym: "serotinergic neuron" RELATED [] xref: FBbt:00005133 xref: MESH:D059326 xref: WBbt:0006837 is_a: CL:0000540 ! neuron [Term] id: CL:0000853 name: olfactory epithelial supporting cell def: "Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons." [GOC:tfm, ISBN:0517223651, SANBI:mhl] synonym: "olfactory epithelial support cell" EXACT [] synonym: "olfactory sustentacular cell" EXACT [] synonym: "supporting cell of olfactory epithelium" EXACT [] synonym: "sustentaculocyte of olfactory epithelium" EXACT [] xref: FMA:62302 is_a: CL:0002169 ! basal cell of olfactory epithelium relationship: part_of UBERON:0001997 ! olfactory epithelium [Term] id: CL:0000855 name: sensory hair cell def: "Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [SANBI:mhl] synonym: "hair cell" BROAD [] xref: BTO:0004744 is_a: CL:0000199 ! mechanoreceptor cell [Term] id: CL:0000856 name: neuromast hair cell def: "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." [SANBI:mhl] is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000855 ! sensory hair cell [Term] id: CL:0000878 name: central nervous system macrophage def: "A tissue-resident macrophage found in the central nervous system." [GO_REF:0000031, PMID:16322748] subset: cellxgene_subset synonym: "CNS macrophage" EXACT [] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001017 ! central nervous system [Term] id: CL:0000881 name: perivascular macrophage def: "A central nervous system macrophage found in small blood vessels in the brain. Markers include CD14+CD16+CD163+." [GO_REF:0000031, GOC:tfm, PMID:16507898] comment: Markers: Human/monkey, mice: CD163. Human: CD14+CD16+CD163+. is_a: CL:0000878 {is_inferred="true"} ! central nervous system macrophage [Term] id: CL:0001031 name: cerebellar granule cell def: "An excitatory granule cell with a soma located in the granular layer of cerebellar cortex. A mature cerebellar granule cell has short dendrites with a characteristic claw-like appearance and a long axon that ascends to the molecular layer where it bifurcates (except in non-teleost fish, where it does not bifurcate) and extends mediolaterally to form parallel fibers." [doi:10.12688/f1000research.15021.1, doi:10.3389/fncir.2020.611841, GOC:mah] comment: It has been noted in at least some mammalian species that granule cells are the most numerous cell type in the cerebellum and in the brain, with at least 99% of all cerebellar neurons being granule cells. {xref="doi:10.3389/fncir.2020.611841"} subset: cellxgene_subset synonym: "granule cell of the cerebellum" EXACT [doi:10.3389/fncir.2020.611841] xref: BTO:0004278 is_a: CL:0000120 ! granule cell is_a: CL:2000028 ! cerebellum glutamatergic neuron [Term] id: CL:0001032 name: cortical granule cell def: "Granule cell that is part of the cerebral cortex." [GOC:mah] is_a: CL:0000120 ! granule cell is_a: CL:0010012 ! cerebral cortex neuron is_a: CL:0012001 ! neuron of the forebrain [Term] id: CL:0001033 name: hippocampal granule cell def: "Granule cell with a soma found in the hippocampus." [GOC:mah] is_a: CL:0001032 ! cortical granule cell is_a: CL:0002608 ! hippocampal neuron [Term] id: CL:0002069 name: type II vestibular sensory cell def: "Mostly cylindrical, resemble Type 1 in their contents and the presence of a kinocilium and stereocilium apically; much greater variation in size, some almost span the entire thickness of the sensory epithelium, while others are smaller than Type 1; receive multiple efferent nerve boutons around their bases as well as afferent endings, which are small expansions rather than chalices." [GOC:tfm, ISBN:0517223651] synonym: "type 2 vestibular hair cell" EXACT [] synonym: "type 2 vestibular sensory cell" EXACT [] synonym: "type II hair cell" EXACT [] xref: FMA:67909 is_a: CL:0000609 ! vestibular hair cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-06-29T09:58:13Z [Term] id: CL:0002070 name: type I vestibular sensory cell def: "Bottle-shaped with narrow neck; broad, rounded basal portion where nucleus is located; stereocilia and a single kinocilium is present apically; receive nerve bouton at their base from an afferent cup-shaped (chalice or calyx) nerve ending." [GOC:tfm, ISBN:0517223651] synonym: "type 1 vestibular hair cell" EXACT [] synonym: "type 1 vestibular sensory cell" EXACT [] synonym: "type I hair cell" EXACT [] xref: FMA:62352 is_a: CL:0000609 ! vestibular hair cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-06-29T09:58:19Z [Term] id: CL:0002082 name: type II cell of adrenal medulla def: "A chromaffin cell of the adrenal medulla that produces epinephrine." [GOC:tfm] synonym: "adremergic chromaffin cell" EXACT [] synonym: "adrenal secreting cell of the adrenal medulla" EXACT [] synonym: "epiniphrine secreting cell of the adrenal medulla" EXACT [] xref: FMA:69322 is_a: CL:0000336 {is_inferred="true"} ! adrenal medulla chromaffin cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-07-14T09:41:42Z [Term] id: CL:0002083 name: type I cell of adrenal medulla def: "A chromaffin cell of the adrenal medulla that produces norepinephrine." [GOC:tfm, ISBN:068340007X] synonym: "noradrenergic chromaffin cell" EXACT [] xref: FMA:69321 is_a: CL:0000336 {is_inferred="true"} ! adrenal medulla chromaffin cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-07-14T10:12:24Z [Term] id: CL:0002169 name: basal cell of olfactory epithelium def: "An epithelial cell located on the basal lamina of the olfactory epithelium." [GOC:tfm, PMID:7143026] synonym: "horizontal basal cell" BROAD [] xref: FMA:62303 is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001997 ! olfactory epithelium property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-08-26T01:58:54Z [Term] id: CL:0002177 name: folliculostellate cell of pars distalis of adenohypophysis def: "A supporting cell of the anterior pituitary gland involved in trophic and catabolic processes; expresses a broad spectrum of cytokeratins indicative of their epithelial nature." [GOC:tfm] synonym: "folliculostellate cell of pars anterior of adenohypophysis" EXACT [] xref: FMA:83102 is_a: CL:0000642 {is_inferred="true"} ! folliculostellate cell relationship: part_of UBERON:0006964 ! pars distalis of adenohypophysis property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-08-25T03:10:10Z [Term] id: CL:0002312 name: somatotroph def: "An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin." [SANBI:mhl] synonym: "somatotrope" EXACT [] synonym: "somatotropic cell" EXACT [] synonym: "somatrophic cell" EXACT [] xref: FMA:83095 xref: MESH:D052683 is_a: CL:0000638 ! acidophil cell of pars distalis of adenohypophysis property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-14T02:33:09Z [Term] id: CL:0002319 name: neural cell def: "A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256] subset: cellxgene_subset xref: CALOHA:TS-2040 xref: FMA:70333 relationship: part_of UBERON:0001016 ! nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-15T01:34:57Z [Term] id: CL:0002362 name: cerebellar granule cell precursor def: "A cell located in the outermost proliferative zone of the external germinal layer that can differentiate into astroglial cells and granule cells. This cell type is glial fibrillary acidic protein-positive and HNK1-positive." [GOC:tfm, PMID:14745007] synonym: "GCP" RELATED OMO:0003000 [doi:10.3389/fncir.2020.611841] synonym: "granule cell precursor" BROAD [doi:10.3389/fncir.2020.611841] synonym: "granule cell progenitor" BROAD [doi:10.3389/fncir.2020.611841] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0009841 ! upper rhombic lip property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-22T01:40:44Z [Term] id: CL:0002374 name: ear hair cell def: "A hair cell of the ear that contains the organs of balance and hearing." [GOC:dph, GOC:tfm, ISBN:0192801023] synonym: "ear receptor cell" EXACT [] is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000855 ! sensory hair cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-24T01:49:31Z [Term] id: CL:0002377 name: immature Schwann cell def: "A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons." [GOC:cvs, GOC:tfm, ISBN:0721662544] subset: cellxgene_subset synonym: "Schwann cell" BROAD [] xref: ZFA:0001725 is_a: CL:0002573 ! Schwann cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-24T02:10:31Z [Term] id: CL:0002453 name: oligodendrocyte precursor cell def: "A progenitor cell of the central nervous system that can differentiate into oligodendrocytes or type-2 astrocytes. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [GOC:tfm, PMID:10704434, PMID:11756508, PMID:20142420, PMID:2182078, PMID:24133281, PMID:9826671] comment: This cell type can be purified from optic nerves and other regions of the embryonic, postnatal and adult rat CNS and can be differentiated in vitro to oligodendrocytes and type-2 astrocytes. Some references use the terms 'oligodendrocyte precursor cell' and 'oligodendrocyte type-2 astrocyte (O-2A) progenitor' to refer to the same entity (e.g., PMID:10704434), while others describe an oligodendrocyte type-2 astrocyte (O-2A) progenitor cell as the precurosr to oligodendrocyte- and type-2 astrocyte- progenitor cells (e.g, ISBN:9780702028991). {xref="PMID:10704434", xref="ISBN:9780702028991", xref="PMID:2182078"} subset: cellxgene_subset subset: human_reference_atlas synonym: "O-2A/OPC" RELATED OMO:0003000 [PMID:24133281] synonym: "O2A/OPC" RELATED OMO:0003000 [PMID:11756508] synonym: "oligodendrocyte-type 2 astrocyte (O-2A) progenitor cell" BROAD [PMID:2253328] synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [PMID:24133281] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-0819-0473"} xref: MESH:D000073637 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) relationship: part_of UBERON:0001017 ! central nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-11-10T02:51:34Z [Term] id: CL:0002485 name: retinal melanocyte def: "A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium." [GOC:tfm, MP:0010190] subset: eye_upper_slim is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-12-03T03:25:32Z [Term] id: CL:0002549 name: fibroblast of choroid plexus def: "A fibroblast that is part of the choroid plexus." [GOC:tfm] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001886 ! choroid plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-02-28T05:01:39Z [Term] id: CL:0002573 name: Schwann cell def: "A glial cell that myelinates or ensheathes axons in the peripheral nervous system." [GOC:tfm, PMID:16807057] comment: A myelinating Schwann cell wraps around a single axon. Myelination occurs in larger diameter axons, while a process called ensheathment occurs on smaller diameter axons in which a single cell wraps around multiple small, unmyelinated axons separating them with a thin layer of cytoplasm. The structure formed is called a Remak bundle. {xref="PMID:16807057"} subset: cellxgene_subset subset: human_reference_atlas xref: BTO:0001220 xref: CALOHA:TS-0898 xref: MESH:D012583 is_a: CL:0000125 ! glial cell relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-02T01:19:27Z [Term] id: CL:0002575 name: central nervous system pericyte def: "A pericyte of the central nervous system." [GOC:tfm] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001017 ! central nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-02T02:54:18Z [Term] id: CL:0002585 name: retinal blood vessel endothelial cell def: "A blood vessel endothelial cell that is part of the retina." [GOC:tfm] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-06T03:28:27Z [Term] id: CL:0002586 name: retinal pigment epithelial cell def: "An epithelial cell of the retinal pigmented epithelium." [GOC:tfm] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas xref: BTO:0004910 xref: FMA:75802 is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0001782 ! pigmented layer of retina property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-06T03:37:09Z [Term] id: CL:0002590 name: smooth muscle cell of the brain vasculature def: "A vascular associated smooth muscle cell of the brain vasculature." [GOC:tfm] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0000955 ! brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T05:01:20Z [Term] id: CL:0002603 name: astrocyte of the cerebellum def: "An astrocyte of the cerebellum." [GOC:tfm] subset: cellxgene_subset is_a: CL:0000127 {is_inferred="true"} ! astrocyte is_a: CL:2000005 ! brain macroglial cell relationship: part_of UBERON:0002037 ! cerebellum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T06:57:27Z [Term] id: CL:0002604 name: hippocampal astrocyte def: "An astrocyte that is part of the hippocampus." [https://orcid.org/0000-0001-7258-9596] subset: human_reference_atlas synonym: "astrocyte of the hippocampal formation" EXACT [] synonym: "astrocyte of the hippocampus" EXACT [] is_a: CL:0000127 {is_inferred="true"} ! astrocyte is_a: CL:0002605 ! astrocyte of the cerebral cortex is_a: CL:1001580 ! hippocampal glial cell relationship: part_of UBERON:0002421 ! hippocampal formation property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-06T06:57:33Z [Term] id: CL:0002605 name: astrocyte of the cerebral cortex def: "An astrocyte of the cerebral cortex." [GOC:tfm] subset: cellxgene_subset subset: human_reference_atlas is_a: CL:0000127 {is_inferred="true"} ! astrocyte is_a: CL:0012000 ! astrocyte of the forebrain is_a: CL:1001579 ! cerebral cortex glial cell relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-06T06:57:36Z [Term] id: CL:0002606 name: astrocyte of the spinal cord def: "An astrocyte of the spinal cord." [GOC:tfm] is_a: CL:0000127 {is_inferred="true"} ! astrocyte relationship: part_of UBERON:0002240 ! spinal cord property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T07:11:26Z [Term] id: CL:0002608 name: hippocampal neuron def: "A neuron with a soma found in the hippocampus." [GOC:tfm] subset: cellxgene_subset is_a: CL:0010012 ! cerebral cortex neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T07:31:49Z [Term] id: CL:0002610 name: raphe nuclei neuron def: "A neuron of the raphe nuclei." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T07:42:06Z [Term] id: CL:0002611 name: neuron of the dorsal spinal cord def: "A CNS neuron of the dorsal spinal cord." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T07:43:34Z [Term] id: CL:0002612 name: neuron of the ventral spinal cord def: "A neuron of the ventral spinal cord." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T07:46:03Z [Term] id: CL:0002613 name: striatum neuron def: "A neuron of the striatum." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:0012001 ! neuron of the forebrain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T07:47:12Z [Term] id: CL:0002614 name: neuron of the substantia nigra def: "A neuron of the substantia nigra." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-06T07:48:42Z [Term] id: CL:0005000 name: spinal cord interneuron def: "A CNS interneuron located in the spinal cord." [CL:CVS] comment: Is_a interneuron, part_of UBERON:0002240. is_a: CL:0000402 {is_inferred="true"} ! CNS interneuron [Term] id: CL:0005008 name: macular hair cell def: "An auditory hair cell located in the macula that is sensitive to auditory stimuli." [GO:cvs] is_a: CL:0000202 ! auditory hair cell is_a: CL:0002374 ! ear hair cell [Term] id: CL:0005024 name: somatomotor neuron def: "A motor neuron that innervates a skeletal muscle. These motor neurons are all excitatory and cholinergic." [ZFIN:CVS] synonym: "somatic motor neuron" EXACT [] is_a: CL:0000100 ! motor neuron is_a: CL:0000108 ! cholinergic neuron [Term] id: CL:0007011 name: enteric neuron def: "Neuron that is part of the enteric nervous system." [CL:MAH] subset: cellxgene_subset is_a: CL:0000029 ! neural crest derived neuron is_a: CL:0000107 ! autonomic neuron relationship: part_of UBERON:0002005 ! enteric nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-9114-8737 creation_date: 2012-06-28T08:20:31Z [Term] id: CL:0008021 name: anterior lateral line ganglion neuron is_a: CL:2000031 ! lateral line ganglion neuron [Term] id: CL:0008025 name: noradrenergic neuron def: "A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter." [GOC:dos] is_a: CL:4033050 ! catecholaminergic neuron [Term] id: CL:0008028 name: visual system neuron is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-7073-9172 creation_date: 2017-07-09T19:12:36Z [Term] id: CL:0008031 name: cortical interneuron def: "An interneuron that has its soma located in the cerebral cortex." [] subset: cellxgene_subset synonym: "cerebral cortex interneuron" EXACT [] is_a: CL:0000402 ! CNS interneuron is_a: CL:0010012 ! cerebral cortex neuron [Term] id: CL:0008038 name: alpha motor neuron def: "A large, multipolar lower motor neuron of the brainstem and spinal cord that innervates the extrafusal muscle fibers of skeletal muscle and are directly responsible for initiating their contraction. While their cell bodies are in the CNS (in the anterior gray horn of the spinal cord), they are part of the somatic nervous system - a branch of the PNS." [DOI:10.1016/B978-0-12-801238-3.05364-2, Wikipedia:Alpha_motor_neuron&oldid=957148643] synonym: "alpha motoneuron" EXACT [] is_a: CL:0008039 ! lower motor neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-7073-9172 creation_date: 2020-09-23T20:16:26Z [Term] id: CL:0008039 name: lower motor neuron def: "The motor neurons of vertebrates that directly innervate skeletal muscles. They receive input from upper motor neurons." [Wikipedia:Lower_motor_neuron&oldid=952547294] xref: FMA:84632 is_a: CL:0005024 ! somatomotor neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-7073-9172 creation_date: 2020-09-23T20:22:07Z [Term] id: CL:0008047 name: intrafusal muscle fiber def: "A skeletal muscle fiber that is part of a muscle spindle. These are specialized muscle fibers that serve as proprioceptors, detecting the amount and rate of change in length of a muscle. They are innervated by both sensory neurons and motor neurons (gamma and beta motorneurons, collectively referred to as fusimotor neurons)." [DOI:10.1016/B978-0-443-10321-6.00004-7, Wikipedia:Intrafusal_muscle_fiber&oldid=937508784] synonym: "myofibra intrafusalis" EXACT [] xref: TH:H3.03.00.0.00012 is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0003718 ! muscle spindle property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-7073-9172 creation_date: 2020-09-26T21:07:01Z [Term] id: CL:0009000 name: sensory neuron of spinal nerve def: "A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord." [GOC:nv, GOC:pr] synonym: "spinal sensory neuron" EXACT [] is_a: CL:0000101 {is_inferred="true"} ! sensory neuron is_a: CL:3000004 ! peripheral sensory neuron [Term] id: CL:0009001 name: compound eye retinal cell def: "Any cell in the compound eye, a light sensing organ composed of ommatidia." [] xref: GOC:pr xref: PMID:12021768 is_a: CL:0009004 ! retinal cell [Term] id: CL:0009004 name: retinal cell def: "Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [GOC:pr] subset: general_cell_types_upper_slim xref: PMID:10702418 is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0005388 ! photoreceptor array [Term] id: CL:0010009 name: camera-type eye photoreceptor cell synonym: "camera type eye photoreceptor cell" EXACT [] is_a: CL:0000287 ! eye photoreceptor cell [Term] id: CL:0010010 name: cerebellar stellate cell is_a: CL:0000122 ! stellate neuron is_a: CL:1001611 ! cerebellar neuron [Term] id: CL:0010011 name: cerebral cortex GABAergic interneuron def: "A GABAergic interneuron whose soma is located in the cerebral cortex." [GOC:dos] subset: cellxgene_subset is_a: CL:0008031 ! cortical interneuron is_a: CL:0011005 ! GABAergic interneuron [Term] id: CL:0010012 name: cerebral cortex neuron def: "A CNS neuron of the cerebral cortex." [GOC:tfm] subset: cellxgene_subset subset: human_reference_atlas synonym: "cortical neuron" EXACT [] synonym: "neuron of cerebral cortex" EXACT [] xref: BTO:0004102 xref: FMA:84104 is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/cell-ontology/issues/1359" xsd:string [Term] id: CL:0010020 name: cardiac glial cell is_a: CL:0000125 ! glial cell [Term] id: CL:0010022 name: cardiac neuron def: "A neuron that has its soma in the heart." [PMID:12486170, PMID:29265764] comment: This term is used in 3 GO terms that were created as part of the heart development focus project. subset: cellxgene_subset is_a: CL:0000540 ! neuron property_value: seeAlso "https://github.com/obophenotype/cell-ontology/pull/1488" xsd:string [Term] id: CL:0011000 name: dorsal horn interneuron def: "A CNS interneuron located in the dorsal horn of the spinal cord." [GOC:nv] synonym: "dorsal spinal cord interneuron" RELATED [] is_a: CL:0005000 {is_inferred="true"} ! spinal cord interneuron [Term] id: CL:0011001 name: spinal cord motor neuron def: "A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement." [GOC:nv] is_a: CL:0000100 {is_inferred="true"} ! motor neuron is_a: CL:2000029 ! central nervous system neuron [Term] id: CL:0011003 name: magnocellular neurosecretory cell def: "A neurosecretory neuron residing mainly in the hypothalamic supraoptic and paraventricular nuclei and in a number of smaller accessory cell groups between these two nuclei, that is capable of secreting the hormones oxytocin or vasopressin, and sometimes both, into the systemic circulation." [GOC:nv, MP:0009467, PMID:10711808] synonym: "magnocellular neuron" EXACT [] xref: ILX:0107463 is_a: CL:0000165 ! neuroendocrine cell is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:0011005 name: GABAergic interneuron def: "An interneuron that uses GABA as a vesicular neurotransmitter. These interneurons are inhibitory" [GOC:CellBLAST, GOC:nv, PMID:29724907] comment: The formal and textual definitions of this term will need to be altered if evidence for non-inhibitory GABA-ergic neurons emerges. subset: human_reference_atlas synonym: "GABAergic inhibitory interneuron" EXACT [] is_a: CL:0000498 ! inhibitory interneuron is_a: CL:0000617 ! GABAergic neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0011103 name: sympathetic neuron def: "Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides." [GOC:NV, isbn:0080923437] subset: cellxgene_subset subset: human_reference_atlas is_a: CL:0000107 ! autonomic neuron property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0011113 name: spiral ganglion neuron def: "Neuron found in the spiral ganglion." [GOC:NV] is_a: CL:0000540 ! neuron [Term] id: CL:0012000 name: astrocyte of the forebrain def: "An astrocyte of the forebrain." [] subset: human_reference_atlas synonym: "forebrain astrocyte" EXACT [] is_a: CL:0000127 {is_inferred="true"} ! astrocyte is_a: CL:2000005 ! brain macroglial cell relationship: part_of UBERON:0001890 ! forebrain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-3837-8864 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0012001 name: neuron of the forebrain def: "A CNS neuron of the forebrain." [] subset: human_reference_atlas synonym: "forebrain neuron" EXACT [] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-3837-8864 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0013000 name: forebrain radial glial cell subset: cellxgene_subset is_a: CL:0000681 ! radial glial cell relationship: part_of UBERON:0001890 ! forebrain [Term] id: CL:0017002 name: prostate neuroendocrine cell def: "A neuroendocrine cell that is part of the prostate epithelium." [http://orcid.org/0000-0001-7772-9578, PMID:33842835] subset: human_reference_atlas synonym: "neuroendocrine cell of prostate epithelium" EXACT [] synonym: "neuroendocrine cell of the prostate" EXACT [] is_a: CL:0000165 ! neuroendocrine cell property_value: RO:0002175 NCBITaxon:9606 created_by: http://orcid.org/0000-0003-2473-2313 [Term] id: CL:1000001 name: retrotrapezoid nucleus neuron is_a: CL:2000029 ! central nervous system neuron [Term] id: CL:1000042 name: forebrain neuroblast is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001890 ! forebrain [Term] id: CL:1000050 name: lateral line nerve glial cell is_a: CL:0000125 ! glial cell relationship: part_of UBERON:0008906 ! lateral line nerve [Term] id: CL:1000073 name: spinal cord radial glial cell is_a: CL:0000681 ! radial glial cell relationship: part_of UBERON:0002240 ! spinal cord [Term] id: CL:1000222 name: stomach neuroendocrine cell is_a: CL:0000165 ! neuroendocrine cell [Term] id: CL:1000223 name: lung neuroendocrine cell def: "A neuroendocrine cell that is part of respiratory epithelium of the lung and is involved in the sensory detection of environmental stimuli, including hypoxia, nicotine and air pressure. Ultrastructurally, this cell type is characterized by the presence of cytoplasmic dense core granules, which are considered the storage sites of amine and peptide hormones. Lung neuroendocrine cells are innervated and appear as solitary cells or as clustered masses, localized at airway bifurcation sites, called neuroepithelial bodies that can release serotonin in response to hypoxia and interact with sensory nerve terminals. Lung neuroendocrine cells also function as reserve stem cells that repair the surrounding epithelium after injury." [doi:10.3109/01902148209069653, doi:10.7554/eLife.78216, PMID:33355253] subset: cellxgene_subset subset: human_reference_atlas synonym: "PNEC" RELATED OMO:0003000 [PMID:33355253] synonym: "pulmonary neuroendocrine cell" EXACT [PMID:33355253] is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000165 ! neuroendocrine cell property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000236 name: posterior lateral line nerve glial cell is_a: CL:1000050 ! lateral line nerve glial cell relationship: part_of UBERON:2000175 ! posterior lateral line nerve [Term] id: CL:1000239 name: anterior lateral line nerve glial cell is_a: CL:1000050 ! lateral line nerve glial cell relationship: part_of UBERON:2000425 ! anterior lateral line nerve [Term] id: CL:1000245 name: posterior lateral line ganglion neuron is_a: CL:2000031 ! lateral line ganglion neuron [Term] id: CL:1000298 name: mesothelial cell of dura mater def: "A mesothelial cell that is part of the dura mater." [GOC:tfm] synonym: "squamous mesothelial cell of dura mater" EXACT [FMA:256516] xref: FMA:256516 is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0002363 ! dura mater [Term] id: CL:1000378 name: type 1 vestibular sensory cell of stato-acoustic epithelium def: "A type I vestibular sensory cell that is part of the stato-acoustic epithelium." [GOC:tfm] xref: FMA:263186 is_a: CL:0002070 ! type I vestibular sensory cell relationship: part_of UBERON:0009969 ! statoacoustic epithelium [Term] id: CL:1000379 name: type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth def: "A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [GOC:tfm] xref: FMA:263188 is_a: CL:0002070 ! type I vestibular sensory cell relationship: part_of UBERON:0002214 ! macula of utricle of membranous labyrinth relationship: part_of UBERON:0003241 ! epithelium of utricle [Term] id: CL:1000380 name: type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth def: "A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [GOC:tfm] xref: FMA:263190 is_a: CL:0002070 ! type I vestibular sensory cell relationship: part_of UBERON:0002212 ! macula of saccule of membranous labyrinth relationship: part_of UBERON:0003242 ! epithelium of saccule [Term] id: CL:1000381 name: type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth def: "A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [GOC:tfm] xref: FMA:263192 is_a: CL:0002070 ! type I vestibular sensory cell relationship: part_of UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: CL:1000382 name: type 2 vestibular sensory cell of stato-acoustic epithelium def: "A type II vestibular sensory cell that is part of the stato-acoustic epithelium." [GOC:tfm] xref: FMA:263194 is_a: CL:0002069 ! type II vestibular sensory cell relationship: part_of UBERON:0009969 ! statoacoustic epithelium [Term] id: CL:1000383 name: type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth def: "A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [GOC:tfm] xref: FMA:263196 is_a: CL:0002069 ! type II vestibular sensory cell relationship: part_of UBERON:0002214 ! macula of utricle of membranous labyrinth relationship: part_of UBERON:0003241 ! epithelium of utricle [Term] id: CL:1000384 name: type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth def: "A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [GOC:tfm] xref: FMA:263198 is_a: CL:0002069 ! type II vestibular sensory cell relationship: part_of UBERON:0002212 ! macula of saccule of membranous labyrinth relationship: part_of UBERON:0003242 ! epithelium of saccule [Term] id: CL:1000385 name: type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth def: "A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [GOC:tfm] xref: FMA:263200 is_a: CL:0002069 ! type II vestibular sensory cell relationship: part_of UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: CL:1000424 name: chromaffin cell of paraaortic body def: "A chromaffin cell that is part of the paraaortic body." [GOC:tfm] synonym: "chromaffin cell of para-aortic body" EXACT [FMA:69328] xref: FMA:69328 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell is_a: CL:1000425 ! chromaffin cell of paraganglion [Term] id: CL:1000425 name: chromaffin cell of paraganglion def: "A chromaffin cell that is part of the paraganglion." [GOC:tfm] xref: FMA:69335 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell [Term] id: CL:1000426 name: chromaffin cell of adrenal gland def: "A chromaffin cell that is part of the adrenal gland." [GOC:tfm] synonym: "adrenal chromaffin cell" EXACT [GO:0061104] xref: FMA:69794 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell [Term] id: CL:1000427 name: adrenal cortex chromaffin cell def: "A chromaffin cell that is part of the adrenal cortex." [GOC:tfm] comment: Not clear this cell type exists. Can't call it a cortical adrenal cell because of different germ layer origin. synonym: "chromaffin cell of adrenal cortex" EXACT [] xref: FMA:69795 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell is_a: CL:1000426 ! chromaffin cell of adrenal gland [Term] id: CL:1000465 name: chromaffin cell of ovary def: "A chromaffin cell that is part of the ovary." [GOC:tfm] xref: FMA:74319 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell [Term] id: CL:1000466 name: chromaffin cell of right ovary def: "A chromaffin cell that is part of the right ovary." [GOC:tfm] xref: FMA:74320 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell is_a: CL:1000465 ! chromaffin cell of ovary [Term] id: CL:1000467 name: chromaffin cell of left ovary def: "A chromaffin cell that is part of the left ovary." [GOC:tfm] xref: FMA:74321 is_a: CL:0000166 {is_inferred="true"} ! chromaffin cell is_a: CL:1000465 ! chromaffin cell of ovary [Term] id: CL:1000606 name: kidney nerve cell xref: KUPO:0001015 is_a: CL:2000032 ! peripheral nervous system neuron [Term] id: CL:1001434 name: olfactory bulb interneuron def: "A neuron residing in the olfactory bulb that serve to process and refine signals arising from olfactory sensory neurons" [PMID:18603310] is_a: CL:0000101 ! sensory neuron is_a: CL:0000402 ! CNS interneuron relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: CL:1001451 name: sensory neuron of dorsal root ganglion def: "A sensory neuron of the dorsal root ganglia that senses body position and sends information about how much the muscle is stretched to the spinal cord." [MP:0004297] synonym: "proprioceptive neuron" EXACT [MP:0004297] is_a: CL:0000006 ! neuronal receptor cell is_a: CL:4023168 ! somatosensory neuron relationship: part_of UBERON:0000044 ! dorsal root ganglion [Term] id: CL:1001502 name: mitral cell def: "The large glutaminergic nerve cells whose dendrites synapse with axons of the olfactory receptor neurons in the glomerular layer of the olfactory bulb, and whose axons pass centrally in the olfactory tract to the olfactory cortex." [MP:0009954] is_a: CL:1001434 ! olfactory bulb interneuron [Term] id: CL:1001503 name: olfactory bulb tufted cell def: "The principal glutaminergic neuron located in the outer third of the external plexiform layer of the olfactory bulb; a single short primary dendrite traverses the outer external plexiform layer and terminates within an olfactory glomerulus in a tuft of branches, where it receives the input from olfactory receptor neuron axon terminals; axons of the tufted cells transfer information to a number of areas in the brain, including the piriform cortex, entorhinal cortex, olfactory tubercle, and amygdala." [MP:0009955] is_a: CL:0000540 ! neuron relationship: part_of UBERON:0005376 ! olfactory bulb external plexiform layer [Term] id: CL:1001505 name: parvocellular neurosecretory cell def: "The secretory neurons of the paraventricular nucleus that synthesize and secrete vasopressin, corticotropin-releasing factor (CRF) and thyrotropin-releasing hormone (TRH) into blood vessels in the hypothalamo-pituitary portal system." [MP:0010125] synonym: "parvocellular neuron" EXACT [] synonym: "parvocellular neurosecretory neuron" EXACT [] is_a: CL:0000165 ! neuroendocrine cell is_a: CL:2000030 ! hypothalamus cell relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: CL:1001569 name: hippocampal interneuron def: "An interneuron with a soma found in the hippocampus." [GOC:pr] xref: FMA:84777 is_a: CL:0002608 ! hippocampal neuron is_a: CL:0008031 ! cortical interneuron [Term] id: CL:1001571 name: hippocampal pyramidal neuron def: "A pyramidal neuron with a soma found in the hippocampus." [GOC:pr, PMID:19342486] synonym: "hippocampus (CA) pyramidal cell" NARROW [NIFSTD:sao131261273] synonym: "hippocampus (CA) pyramidal neuron" NARROW [NIFSTD:sao131261273] xref: NIFSTD:sao131261273 xref: SAO:sao131261273 is_a: CL:0002608 ! hippocampal neuron is_a: CL:4023111 ! cerebral cortex pyramidal neuron relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer [Term] id: CL:1001579 name: cerebral cortex glial cell def: "Glial cell of cerebral cortex." [NPX:PDR] synonym: "brain cortex glial cell" RELATED [CALOHA:TS-1256] synonym: "cerebral cortex glial cells" RELATED [CALOHA:TS-1256] synonym: "cerebrum cortex glial cell" RELATED [CALOHA:TS-1256] xref: CALOHA:TS-1256 is_a: CL:0000125 ! glial cell relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: CL:1001580 name: hippocampal glial cell def: "A glial cell that is part of the hippocampus." [NPX:PDR] synonym: "hippocampus glial cell" EXACT [CALOHA:TS-1257] synonym: "hippocampus neuroglial cell" EXACT [CALOHA:TS-1257] xref: CALOHA:TS-1257 is_a: CL:1001579 ! cerebral cortex glial cell relationship: part_of UBERON:0002421 ! hippocampal formation [Term] id: CL:1001581 name: lateral ventricle glial cell def: "Glial cell of lateral ventricle." [NPX:PDR] synonym: "lateral ventricle glial cells" RELATED [CALOHA:TS-1258] xref: CALOHA:TS-1258 is_a: CL:0000125 ! glial cell relationship: part_of UBERON:0002285 ! telencephalic ventricle [Term] id: CL:1001582 name: lateral ventricle neuron def: "Neuron of lateral ventricle." [NPX:PDR] synonym: "lateral ventricle neural cell" RELATED [CALOHA:TS-1261] synonym: "lateral ventricle neuronal cell" RELATED [CALOHA:TS-1261] synonym: "lateral ventricle neuronal cells" RELATED [CALOHA:TS-1261] xref: CALOHA:TS-1261 is_a: CL:2000029 ! central nervous system neuron [Term] id: CL:1001602 name: cerebral cortex endothelial cell def: "Endothelial cells forming the walls of the capillaries within the cerebral cortex." [NPX:PDR] subset: cellxgene_subset synonym: "cerebral cortex endothelial cells" RELATED [CALOHA:TS-2372] synonym: "endothelial cells of cerebral cortex" RELATED [CALOHA:TS-2372] xref: CALOHA:TS-2372 is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0013694 ! brain endothelium [Term] id: CL:1001611 name: cerebellar neuron def: "Neuron of the cerebellum." [NPX:PDR] synonym: "cerebellum neuron" RELATED [CALOHA:TS-2359] xref: CALOHA:TS-2359 xref: FMA:84665 is_a: CL:2000029 ! central nervous system neuron [Term] id: CL:2000004 name: pituitary gland cell def: "Any cell that is part of a pituitary gland." [GOC:TermGenie] subset: cellxgene_subset is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0000007 ! pituitary gland property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-03-26T22:14:56Z [Term] id: CL:2000005 name: brain macroglial cell def: "Any macroglial cell that is part of a brain." [GOC:TermGenie] is_a: CL:0000126 ! macroglial cell relationship: part_of UBERON:0000955 ! brain property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-03-28T21:35:27Z [Term] id: CL:2000019 name: compound eye photoreceptor cell def: "Any photoreceptor cell that is part of a compound eye." [GOC:TermGenie] xref: FBbt:00004211 is_a: CL:0000287 ! eye photoreceptor cell property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-24T23:16:45Z [Term] id: CL:2000023 name: spinal cord ventral column interneuron def: "Any interneuron that is part of a spinal cord ventral column." [GOC:TermGenie] is_a: CL:0005000 ! spinal cord interneuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T00:23:36Z [Term] id: CL:2000024 name: spinal cord medial motor column neuron def: "Any neuron that is part of a spinal cord medial motor column." [GOC:TermGenie] is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T00:23:43Z [Term] id: CL:2000025 name: spinal cord oligodendrocyte def: "Any oligodendrocyte that is part of a spinal cord." [GOC:TermGenie] is_a: CL:0000128 ! oligodendrocyte relationship: part_of UBERON:0002240 ! spinal cord property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T00:23:50Z [Term] id: CL:2000027 name: cerebellum basket cell def: "Any basket cell that is part of a cerebellum." [GOC:TermGenie] is_a: CL:0000118 ! basket cell is_a: CL:0000402 ! CNS interneuron is_a: CL:1001611 ! cerebellar neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T00:24:03Z [Term] id: CL:2000028 name: cerebellum glutamatergic neuron def: "Any glutamatergic neuron that is part of a cerebellum." [GOC:TermGenie] is_a: CL:0000679 ! glutamatergic neuron is_a: CL:1001611 ! cerebellar neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T00:24:10Z [Term] id: CL:2000029 name: central nervous system neuron def: "Any neuron that is part of a central nervous system." [GOC:TermGenie] is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T01:17:43Z [Term] id: CL:2000030 name: hypothalamus cell def: "Any native cell that is part of a hypothalamus." [GOC:TermGenie] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0001898 ! hypothalamus property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T01:17:50Z [Term] id: CL:2000031 name: lateral line ganglion neuron def: "Any neuron that is part of a lateral line ganglion." [GOC:TermGenie] is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T01:17:57Z [Term] id: CL:2000032 name: peripheral nervous system neuron def: "A neuron that is part of a peripheral nervous system." [GOC:TermGenie, ISBN:0721662544] subset: cellxgene_subset synonym: "peripheral neuron" EXACT [] synonym: "PNS neuron" EXACT [] xref: FMA:84664 is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T02:28:17Z [Term] id: CL:2000034 name: anterior lateral line neuromast hair cell def: "Any neuromast hair cell that is part of a anterior lateral line." [GOC:TermGenie] is_a: CL:0000856 ! neuromast hair cell property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T03:44:37Z [Term] id: CL:2000037 name: posterior lateral line neuromast hair cell def: "Any neuromast hair cell that is part of a posterior lateral line." [GOC:TermGenie] is_a: CL:0000856 ! neuromast hair cell property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-25T03:44:57Z [Term] id: CL:2000043 name: brain pericyte def: "Any pericyte cell that is part of a brain." [GOC:TermGenie] subset: cellxgene_subset is_a: CL:0002575 ! central nervous system pericyte relationship: part_of UBERON:0000955 ! brain property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-07-09T00:18:22Z [Term] id: CL:2000044 name: brain microvascular endothelial cell def: "Any microvascular endothelial cell that is part of a brain." [GOC:TermGenie] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0000955 ! brain property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-07-09T00:24:53Z [Term] id: CL:2000047 name: brainstem motor neuron def: "Any motor neuron that is part of a brainstem." [GOC:TermGenie] is_a: CL:0000100 ! motor neuron is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-10-02T23:52:53Z [Term] id: CL:2000049 name: primary motor cortex pyramidal cell def: "Any pyramidal cell that is part of a primary motor cortex." [GOC:TermGenie] comment: http://www.ncbi.nlm.nih.gov/pubmed/12524689 is_a: CL:4023111 ! cerebral cortex pyramidal neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-10-06T17:39:04Z [Term] id: CL:2000086 name: neocortex basket cell def: "Any basket cell that is part of a neocortex." [GOC:TermGenie] is_a: CL:0000118 ! basket cell is_a: CL:0010011 ! cerebral cortex GABAergic interneuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-12-24T00:37:19Z [Term] id: CL:2000087 name: dentate gyrus of hippocampal formation basket cell def: "Any basket cell that is part of a dentate gyrus of hippocampal formation." [GOC:TermGenie] is_a: CL:0000118 ! basket cell is_a: CL:0010011 ! cerebral cortex GABAergic interneuron is_a: CL:1001569 ! hippocampal interneuron is_a: CL:4023062 ! dentate gyrus neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-12-24T00:37:24Z [Term] id: CL:2000088 name: Ammon's horn basket cell def: "Any basket cell that is part of a Ammon's horn." [GOC:TermGenie] is_a: CL:0000118 ! basket cell is_a: CL:0010011 ! cerebral cortex GABAergic interneuron is_a: CL:1001569 ! hippocampal interneuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-12-24T00:37:30Z [Term] id: CL:2000089 name: dentate gyrus granule cell def: "A granule cell that has soma location in the dentate gyrus cell layer of the hippocampal formation and has an elliptical cell body and characteristic cone-shaped tree of spiny apical dendrites. The branches extend throughout the molecular layer and the distal tips of the dendritic tree end just at the hippocampal fissure or at the ventricular surface. The dentate gyrus granule cell is the principal cell type of the dentate gyrus." [GOC:TermGenie, PMID:17765709] comment: As far as can be determined, all dentate granule cells appear to project to CA3 and the axon trajectory is partially correlated with the position of the parent cell body. {xref="PMID:17765709"} synonym: "dentate gyrus of hippocampal formation granule cell" EXACT [] is_a: CL:0001033 ! hippocampal granule cell is_a: CL:4023062 ! dentate gyrus neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2015-02-23T05:48:23Z [Term] id: CL:2000090 name: dentate gyrus of hippocampal formation stellate cell def: "Any stellate cell that is part of a dentate gyrus of hippocampal formation." [GOC:TermGenie] is_a: CL:0000122 ! stellate neuron is_a: CL:0012001 ! neuron of the forebrain is_a: CL:4023062 ! dentate gyrus neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2015-02-23T05:48:40Z [Term] id: CL:2000097 name: midbrain dopaminergic neuron def: "Any dopaminergic neuron that is part of a midbrain." [GOC:TermGenie] is_a: CL:0000700 ! dopaminergic neuron is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2015-12-03T16:42:40Z [Term] id: CL:3000002 name: sympathetic noradrenergic neuron def: "Sympathetic noradrenergic neuron." [GOC:CellBLAST, PMID:30096314] subset: human_reference_atlas is_a: CL:0008025 ! noradrenergic neuron is_a: CL:0011103 ! sympathetic neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q97529981 property_value: RO:0002175 NCBITaxon:9606 creation_date: 2019-02-25T19:30:14Z [Term] id: CL:3000003 name: sympathetic cholinergic neuron def: "Sympathetic cholinergic neuron." [GOC:CellBLAST, PMID:30096314] is_a: CL:0000108 ! cholinergic neuron is_a: CL:0011103 ! sympathetic neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q97529981 creation_date: 2019-02-25T19:32:20Z [Term] id: CL:3000004 name: peripheral sensory neuron def: "Peripheral sensory neuron." [GOC:CellBLAST, PMID:30096314] is_a: CL:0000101 ! sensory neuron is_a: CL:2000032 ! peripheral nervous system neuron property_value: http://purl.org/dc/terms/contributor https://www.wikidata.org/entity/Q97529981 creation_date: 2019-02-25T19:34:33Z [Term] id: CL:4023035 name: lateral ganglionic eminence derived neuron def: "A neuron that is derived from a precursor cell in the lateral ganglion eminence." [wikipediaversioned:Ganglionic_eminence&oldid=1186824360] synonym: "LGE-derived neuron" EXACT [PMID:10377350] is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor "https://orcid.org/0000-0001-7258-9596" xsd:string property_value: http://purl.org/dc/terms/contributor "https://orcid.org/0000-0002-7073-9172" xsd:string [Term] id: CL:4023038 name: L6b glutamatergic cortical neuron def: "A glutamatergic neuron with a soma found in cortical layer 6b. They are transcriptomically related to corticothalamic-projecting neurons but have differential projections to the thalamus or anterior cingulate." [DOI:10.1101/2020.10.19.34312, PMID:30382198] subset: BDS_subset subset: cellxgene_subset xref: ILX:0770163 is_a: CL:0000679 ! glutamatergic neuron is_a: CL:0010012 ! cerebral cortex neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 property_value: IAO:0000028 "L6b glut" xsd:string [Term] id: CL:4023039 name: amygdala excitatory neuron comment: An excitatory neuron that is located in the amygdala. {xref="DOI:10.1101/2022.10.12.511898"} subset: human_reference_atlas is_a: CL:0000679 ! glutamatergic neuron is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023057 name: cerebellar inhibitory GABAergic interneuron comment: A GABAergic interneuron whose soma is located in the cerebellar cortex. {xref="DOI:10.1101/2022.10.12.511898"} subset: human_reference_atlas is_a: CL:0000402 ! CNS interneuron is_a: CL:0011005 ! GABAergic interneuron is_a: CL:1001611 ! cerebellar neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023062 name: dentate gyrus neuron def: "A neuron with its soma located in the dentate gyrus of the hippocampus." [] subset: human_reference_atlas is_a: CL:0002608 ! hippocampal neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023063 name: medial ganglionic eminence derived interneuron def: "An interneuron that is derived from the medial ganglionic eminence." [DOI:10.1101/2022.10.12.511898] subset: human_reference_atlas synonym: "MGE interneuron" EXACT [] is_a: CL:0000099 ! interneuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: IAO:0000028 "MGE interneuron" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023064 name: caudal ganglionic eminence derived interneuron def: "An interneuron that is derived from the caudal ganglionic eminence." [DOI:10.1101/2022.10.12.511898] subset: human_reference_atlas synonym: "CGE interneuron" EXACT [] is_a: CL:0000099 ! interneuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: IAO:0000028 "CGE interneuron" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023068 name: thalamic excitatory neuron def: "An excitatory neuron that has its soma located in the thalamic complex." [DOI:10.1101/2022.10.12.511898] subset: human_reference_atlas is_a: CL:0000679 ! glutamatergic neuron is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023069 name: medial ganglionic eminence derived GABAergic cortical interneuron def: "A GABAergic cortical interneuron that develops from the medial ganglionic eminence and has migrated to the cerebral cortex." [PMID:12637172] synonym: "MGE cortical interneuron" EXACT [] is_a: CL:0010011 ! cerebral cortex GABAergic interneuron is_a: CL:4023063 ! medial ganglionic eminence derived interneuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 property_value: IAO:0000028 "MGE cortical gaba interneuron" xsd:string [Term] id: CL:4023070 name: caudal ganglionic eminence derived GABAergic cortical interneuron def: "A GABAergic cortical interneuron that develops from the caudal ganglionic eminence and has migrated to the cerebral cortex." [PMID:20130169] subset: cellxgene_subset synonym: "CGE cortical interneuron" EXACT [] is_a: CL:0010011 ! cerebral cortex GABAergic interneuron is_a: CL:4023064 ! caudal ganglionic eminence derived interneuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 property_value: IAO:0000028 "CGE gaba cortical interneuron" xsd:string [Term] id: CL:4023072 name: brain vascular cell def: "A cell that is part of the brain vasculature." [DOI:10.1101/2022.10.12.511898] subset: human_reference_atlas is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0008998 ! vasculature of brain property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023074 name: mammillary body neuron def: "A neuron that has its soma located in the mammillary body." [DOI:10.1101/2022.10.12.511898] subset: human_reference_atlas is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023079 name: midbrain-derived inhibitory neuron def: "A GABAergic inhibitory neuron that is derived from the midbrain." [DOI:10.1101/2022.10.12.511898] subset: human_reference_atlas is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023107 name: reticulospinal neuron def: "A neuron with soma location in the reticular formation with axons that extend into the spinal cord such. Reticulospinal neuron activity can lead to a variety of motor behaviors." [PMID:29720934] synonym: "RSN" EXACT [PMID:29720934] is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023109 name: vasopressin-secreting magnocellular cell def: "A magnocellular neurosecretory cell that is capable of producing and secreting vasopressin." [WikipediaVersioned:Magnocellular_neurosecretory_cell&oldid=1021059931] is_a: CL:0011003 ! magnocellular neurosecretory cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023110 name: amygdala pyramidal neuron def: "A pyramidal neuron with soma located in the amygdala." [PMID:1375860] is_a: CL:0000598 ! pyramidal neuron is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023111 name: cerebral cortex pyramidal neuron def: "A pyramidal neuron with soma located in the cerebral cortex." [PMID:30715238] is_a: CL:0000598 ! pyramidal neuron is_a: CL:0010012 ! cerebral cortex neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023120 name: cochlea auditory hair cell def: "An auditory hair cell found in the cochlea." [Wikipedia:Hair_cell] synonym: "cochlear hair cell" EXACT [] xref: FMA:62364 is_a: CL:0000202 ! auditory hair cell is_a: CL:0002374 ! ear hair cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023154 name: myelinating glial cell def: "A glial cell that myelinates axonal processes." [DOI:10.1007/3-540-29623-9_3240] is_a: CL:0000125 ! glial cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023168 name: somatosensory neuron def: "A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli." [PMID:22865660] is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023187 name: koniocellular cell def: "A neuron with a small cell body that is located in a koniocellular layer of the lateral geniculate nucleus (LGN)." [WikipediaVersioned:Lateral_geniculate_nucleus&oldid=1098375993] comment: In adult monkeys, koniocellular cells can be distinguished from parvocellular and magnocellular of the LGN by their expression of calbindin, the alpha subunit of type II calmodulin-dependent protein kinase, and the gamma subunit of protein kinase C. {xref="PMID:10845061"} synonym: "K cell" EXACT [PMID:10845061] xref: NIFEXT:44 is_a: CL:2000029 ! central nervous system neuron property_value: http://purl.org/dc/terms/contributor http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4030027 name: GABAergic amacrine cell def: "An amacrine cell that uses GABA as a neurotransmitter." [https://doi.org/10.1016/j.cell.2020.08.013] subset: cellxgene_subset synonym: "amacrine cell, GABAergic" EXACT [] is_a: CL:0000561 ! amacrine cell is_a: CL:0011005 ! GABAergic interneuron property_value: http://purl.org/dc/terms/date "2022-10-17T12:35:11Z" xsd:dateTime [Term] id: CL:4033002 name: neuroendocrine cell of epithelium of crypt of Lieberkuhn def: "A(n) neuroendocrine cell that is part of a(n) epithelium of crypt of Lieberkuhn." [PMID:31390635] is_a: CL:0000165 ! neuroendocrine cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-6677-8489 [Term] id: CL:4033010 name: neuroendocrine cell of epithelium of lobar bronchus def: "A(n) neuroendocrine cell that is part of a(n) epithelium of lobar bronchus." [PMID:26711336, PMID:33355253] subset: human_reference_atlas is_a: CL:1000223 ! lung neuroendocrine cell property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-6677-8489 property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4033015 name: retinal astrocyte def: "A star-shaped glial cell that is part of some retina. This cell links neurons to blood vessels and may provide structural and physiological support to optic nerve head axons." [PMID:25236977, PMID:33796062] comment: In response to elevated intraocular pressure, a retinal astrocyte may modulate extracellular matrix remodeling. In the human retina, a retinal astrocyte is GFAP-positive, SOD3-positive and GYPC-positive. {xref="PMID:33796062", xref="PMID:32555229"} subset: eye_upper_slim synonym: "retinal astroglia" RELATED OMO:0003004 [PMID:33796062] is_a: CL:0000127 ! astrocyte is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-6677-8489 property_value: http://purl.org/dc/terms/date "2023-03-02T14:38:32Z" xsd:dateTime [Term] id: CL:4033049 name: taste receptor cell of tongue def: "A taste receptor cell that is part of a taste bud of a tongue." [DOI:10.1111/j.1096-3642.1981.tb01137.x, http://www.nejohnston.org/Birds/documents/AvianTongues_Johnston.pdf, PMID:10052456, PMID:28655883] synonym: "gustatory cell of tongue" RELATED [DOI:10.1016/s0022-5320(69)80043-2] is_a: CL:0002319 ! neural cell relationship: part_of UBERON:0014451 ! tongue taste bud property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-6677-8489 property_value: http://purl.org/dc/terms/date "2023-05-03T07:59:58Z" xsd:dateTime [Term] id: CL:4033050 name: catecholaminergic neuron def: "A neuron that releases catecholamine as a neurotransmitter." [ISBN:0521442516, PMID:12094209] comment: Frequently used when describing the developing nervous system in zebrafish. A catecholaminergic neuron expresses tyrosine hydroxylase (TH), tyrosine hydroxylase 2 (TH2), aromatic amino acid decarboxylase (AADC), dopamine b-hydroxylase (DBH), and phenylethanolamine-N-methyl transferase (PEMT), which are enzymes necessary for catecholamine synthesis. {xref="https://orcid.org/0000-0002-2244-7917", xref="PMID:12128258", xref="PMID:10191060", xref="PMID:34880760"} is_a: CL:0000540 ! neuron property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-6677-8489 property_value: http://purl.org/dc/terms/date "2023-05-18T12:07:45Z" xsd:dateTime [Term] id: CL:4040002 name: enteroglial cell def: "Glial cell that provides support to the enteric nervous system. It is involved in enteric neurotransmission, in maintaining the integrity of the mucosal barrier of the gut and serves as a link between the nervous and immune systems of the gut. In enteric nerve strands, glial processes ensheath multiaxonal bundles which distinguishes enteric glia from all other peripheral glia. Ultrastructurally, the most conspicuous trait of an enteroglial cell is the presence of 10 nm filaments, which criss-cross the cell body, form axial bundles in the processes and appear to firmly anchor the cells to the ganglionic surfaces. Similar to astrocytes, their main constituent is glial fibrillary acidic protein (GFAP)." [PMID:16336493, PMID:17483847, PMID:25975510] synonym: "enteric glia" RELATED OMO:0003004 [PMID:11169131] synonym: "enteric glial cell" EXACT [PMID:11169131, PMID:25170211] is_a: CL:0000125 ! glial cell relationship: part_of UBERON:0002005 ! enteric nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-0819-0473 property_value: http://purl.org/dc/terms/date "2023-04-03T15:15:40Z" xsd:dateTime [Term] id: GO:0001750 name: photoreceptor outer segment namespace: cellular_component def: "The outer segment of a vertebrate photoreceptor that contains a stack of membrane discs embedded with photoreceptor proteins." [GOC:cilia, GOC:krc, GOC:pde, ISBN:0824072820, PMID:19501669, PMID:26574505, PMID:6771304] relationship: part_of CL:0000210 ! photoreceptor cell relationship: part_of CL:0000540 ! neuron relationship: part_of GO:0097733 ! photoreceptor cell cilium [Term] id: GO:0001917 name: photoreceptor inner segment namespace: cellular_component def: "The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs." [GOC:add, PMID:12019563] subset: goslim_pir relationship: part_of CL:0000210 ! photoreceptor cell relationship: part_of CL:0000540 ! neuron [Term] id: GO:0030424 name: axon namespace: cellular_component def: "The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter." [GOC:nln, ISBN:0198506732] xref: NIF_Subcellular:sao1770195789 xref: Wikipedia:Axon is_a: GO:0043005 ! neuron projection [Term] id: GO:0030425 name: dendrite namespace: cellular_component def: "A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body." [GOC:aruk, GOC:bc, GOC:dos, GOC:mah, GOC:nln, ISBN:0198506732] xref: NIF_Subcellular:sao1211023249 xref: Wikipedia:Dendrite is_a: GO:0043005 ! neuron projection relationship: part_of GO:0036477 ! somatodendritic compartment relationship: part_of GO:0097447 ! dendritic tree [Term] id: GO:0032589 name: neuron projection membrane namespace: cellular_component def: "The portion of the plasma membrane surrounding a neuron projection." [GOC:mah] relationship: part_of GO:0043005 ! neuron projection [Term] id: GO:0032590 name: dendrite membrane namespace: cellular_component def: "The portion of the plasma membrane surrounding a dendrite." [GOC:mah] is_a: GO:0032589 ! neuron projection membrane relationship: part_of GO:0030425 ! dendrite [Term] id: GO:0032839 name: dendrite cytoplasm namespace: cellular_component def: "All of the contents of a dendrite, excluding the surrounding plasma membrane." [GOC:mah] synonym: "dendritic cytoplasm" EXACT [] is_a: GO:0120111 ! neuron projection cytoplasm relationship: part_of GO:0030425 ! dendrite property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/14472" xsd:anyURI [Term] id: GO:0036477 name: somatodendritic compartment namespace: cellular_component def: "The region of a neuron that includes the cell body (cell soma) and dendrite(s), but excludes the axon." [GOC:pad, GOC:PARL] relationship: part_of CL:0000540 ! neuron created_by: bf creation_date: 2014-07-24T10:06:19Z [Term] id: GO:0043005 name: neuron projection namespace: cellular_component def: "A prolongation or process extending from a nerve cell, e.g. an axon or dendrite." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] subset: goslim_pir synonym: "nerve fiber" RELATED [GOC:dph] synonym: "neurite" NARROW [] synonym: "neuron process" EXACT [] synonym: "neuron protrusion" EXACT [NIF_Subcellular:sao250931889] synonym: "neuronal cell projection" EXACT [] xref: NIF_Subcellular:sao867568886 relationship: part_of CL:0000540 ! neuron property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0043025 name: neuronal cell body namespace: cellular_component def: "The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites." [GOC:go_curators] comment: Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections. subset: goslim_pir synonym: "neuron cell body" EXACT [] synonym: "neuronal cell soma" EXACT [] xref: NIF_Subcellular:sao1044911821 xref: Wikipedia:Soma_(biology) relationship: part_of CL:0000540 ! neuron relationship: part_of GO:0036477 ! somatodendritic compartment [Term] id: GO:0043209 name: myelin sheath namespace: cellular_component def: "An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system." [GOC:cjm, GOC:jl, NIF_Subcellular:sao593830697, Wikipedia:Myelin] synonym: "astrocyte sheath" NARROW [NIF_Subcellular:nlx_subcell_20090204] synonym: "oligodendrocyte myelin sheath" NARROW [NIF_Subcellular:sao1279474730] synonym: "Schwann cell myelin sheath" NARROW [] xref: FMA:62983 xref: NIF_Subcellular:sao593830697 xref: Wikipedia:Myelin relationship: part_of CL:0000125 ! glial cell [Term] id: GO:0097386 name: glial cell projection namespace: cellular_component def: "A prolongation or process extending from a glial cell." [GOC:mc] synonym: "glial process" RELATED [] synonym: "glial projection" RELATED [] relationship: part_of CL:0000125 ! glial cell created_by: pr creation_date: 2012-10-22T13:55:54Z [Term] id: GO:0097447 name: dendritic tree namespace: cellular_component def: "The entire complement of dendrites for a neuron, consisting of each primary dendrite and all its branches." [GOC:aruk, GOC:bc, NIF_Subcellular:sao172297168] xref: NIF_Subcellular:sao172297168 is_a: GO:0043005 ! neuron projection relationship: part_of GO:0036477 ! somatodendritic compartment created_by: pr creation_date: 2012-12-17T12:31:49Z [Term] id: GO:0097449 name: astrocyte projection namespace: cellular_component def: "A prolongation or process extending from the soma of an astrocyte and wrapping around neurons." [NIF_Subcellular:sao1630537580] synonym: "astrocyte process" EXACT [] synonym: "peripheral astrocyte process" RELATED [NIF_Subcellular:sao1573004591, PMID:12445894] synonym: "vellous process" RELATED [NIF_Subcellular:sao1189060993] xref: NIF_Subcellular:sao1630537580 is_a: GO:0097386 ! glial cell projection relationship: part_of CL:0000127 ! astrocyte created_by: pr creation_date: 2012-12-17T13:29:55Z [Term] id: GO:0097450 name: astrocyte end-foot namespace: cellular_component def: "Terminal process of astrocyte abutting non-neuronal surfaces in the brain." [NIF_Subcellular:sao388182739] synonym: "astrocyte endfoot" EXACT [] xref: NIF_Subcellular:sao388182739 is_a: GO:0097449 ! astrocyte projection created_by: pr creation_date: 2012-12-17T13:33:55Z [Term] id: GO:0097454 name: Schwann cell microvillus namespace: cellular_component def: "Small finger-like extension of a Schwann cell that contacts the nodal membrane." [NIF_Subcellular:sao1890444066, PMID:15988042] xref: NIF_Subcellular:sao1890444066 is_a: GO:0097386 ! glial cell projection relationship: part_of CL:0002573 ! Schwann cell created_by: pr creation_date: 2012-12-19T13:01:02Z [Term] id: GO:0097457 name: hippocampal mossy fiber namespace: cellular_component def: "An axon of a hippocampal granule cell, including dentate gyrus granule cell and CA3 granule cell, characterized by expansions (mossy fiber expansions) giving the fibers a mossy appearance. These unmyelinated axons were first described by Ramon y Cajal." [NIF_Subcellular:nlx_subcell_100312, PMID:17765709, PMID:20554881, PMID:24336151] xref: NIF_Subcellular:nlx_subcell_100312 is_a: GO:0030424 ! axon relationship: part_of CL:0001033 ! hippocampal granule cell property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/25796" xsd:anyURI created_by: pr creation_date: 2012-12-19T16:51:57Z [Term] id: GO:0097733 name: photoreceptor cell cilium namespace: cellular_component def: "A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment." [GOC:cilia, Wikipedia:Photoreceptor_cell#Histology] synonym: "photoreceptor cilium" EXACT [] is_a: GO:0043005 ! neuron projection relationship: part_of CL:0000210 ! photoreceptor cell relationship: part_of CL:0000540 ! neuron created_by: pr creation_date: 2016-09-30T10:50:11Z [Term] id: GO:0098793 name: presynapse namespace: cellular_component def: "The part of a synapse that is part of the presynaptic cell." [GOC:dos] subset: goslim_synapse synonym: "presynaptic terminal" EXACT [] relationship: part_of CL:0000540 ! neuron [Term] id: GO:0098992 name: neuronal dense core vesicle namespace: cellular_component def: "A dense core vesicle (granule) that is part of a neuron. These vesicles typically contain neuropeptides. They can be found in all parts of neurons, including the soma, dendrites, axonal swellings (varicosities) and synaptic terminals." [GOC:dos, ISBN:978-0-07-181001-2, Wikipedia:Neuropeptide&oldid=713905176] subset: goslim_synapse relationship: part_of CL:0000540 ! neuron [Term] id: GO:0099012 name: neuronal dense core vesicle membrane namespace: cellular_component def: "The lipid bilayer surrounding a neuronal dense core vesicle." [GOC:dos] subset: goslim_synapse relationship: part_of GO:0098992 ! neuronal dense core vesicle [Term] id: GO:0099143 name: presynaptic actin cytoskeleton namespace: cellular_component def: "The actin cytoskeleton that is part of a presynapse." [GOC:dos] subset: goslim_synapse is_a: GO:0099569 ! presynaptic cytoskeleton relationship: part_of GO:0098793 ! presynapse created_by: dos creation_date: 2017-06-09T18:36:19Z [Term] id: GO:0099182 name: presynaptic intermediate filament cytoskeleton namespace: cellular_component def: "The intermediate filament cytoskeleton that is part of a presynapse." [GOC:dos] subset: goslim_synapse is_a: GO:0099569 ! presynaptic cytoskeleton relationship: part_of GO:0098793 ! presynapse created_by: dos creation_date: 2017-12-01T18:10:21Z [Term] id: GO:0099523 name: presynaptic cytosol namespace: cellular_component def: "The region of the cytosol consisting of all cytosol that is part of the presynapse." [GOC:dos] subset: goslim_synapse relationship: part_of GO:0098793 ! presynapse [Term] id: GO:0099569 name: presynaptic cytoskeleton namespace: cellular_component def: "The portion of the cytoskeleton contained within the presynapse." [GOC:dos] subset: goslim_synapse relationship: part_of GO:0098793 ! presynapse [Term] id: GO:0120111 name: neuron projection cytoplasm namespace: cellular_component def: "All of the contents of a plasma membrane bounded neuron projection, excluding the plasma membrane surrounding the projection." [GOC:ha] relationship: part_of GO:0043005 ! neuron projection property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/14472" xsd:anyURI created_by: krc creation_date: 2017-11-01T18:58:12Z [Term] id: GO:0120199 name: cone photoreceptor outer segment namespace: cellular_component def: "The outer segment of a vertebrate cone photoreceptor that contains membrane discs that are contiguous with the ciliary membrane and containing opsin photoreceptor proteins." [GOC:krc, GOC:pde, PMID:19501669, PMID:26574505, PMID:6771304] is_a: GO:0001750 ! photoreceptor outer segment relationship: part_of CL:0000573 ! retinal cone cell property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/17217" xsd:anyURI created_by: krc creation_date: 2019-05-07T22:23:28Z [Term] id: GO:0120200 name: rod photoreceptor outer segment namespace: cellular_component def: "The outer segment of a vertebrate rod photoreceptor that contains sealed membrane discs that are not connected to the ciliary membrane and containing rhodopsin photoreceptor proteins." [GOC:krc, GOC:pde, PMID:19501669, PMID:26574505, PMID:6771304] is_a: GO:0001750 ! photoreceptor outer segment relationship: part_of CL:0000604 ! retinal rod cell property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/17217" xsd:anyURI created_by: krc creation_date: 2019-05-07T22:47:20Z [Term] id: GO:1901588 name: dendritic microtubule namespace: cellular_component def: "Any microtubule in a dendrite, a neuron projection." [GOC:TermGenie, NIF_Subcellular:sao110773650] synonym: "microtubule of dendrite" EXACT [GOC:TermGenie] synonym: "microtubulus of dendrite" EXACT [GOC:TermGenie] xref: NIF_Subcellular:sao110773650 relationship: part_of CL:0000540 ! neuron relationship: part_of GO:0030425 ! dendrite created_by: pr creation_date: 2012-11-07T14:37:30Z [Term] id: GO:1901589 name: axon microtubule bundle namespace: cellular_component def: "An arrangement of closely apposed microtubules running parallel to each other in the axon hillock and initial segment." [GOC:TermGenie, NIF_Subcellular:sao707332678] synonym: "axon microtubule fascicle" EXACT [] synonym: "microtubule bundle of axon" EXACT [GOC:TermGenie] synonym: "microtubule fascicle of axon" EXACT [GOC:TermGenie] xref: NIF_Subcellular:sao707332678 relationship: part_of GO:0030424 ! axon created_by: pr creation_date: 2012-11-07T15:37:12Z [Term] id: GO:1904115 name: axon cytoplasm namespace: cellular_component def: "Any cytoplasm that is part of a axon." [GO_REF:0000064, GOC:TermGenie, PMID:18667152] synonym: "axoplasm" EXACT [] is_a: GO:0120111 ! neuron projection cytoplasm relationship: part_of GO:0030424 ! axon property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/14472" xsd:anyURI created_by: sl creation_date: 2015-04-06T18:13:14Z [Term] id: UBERON:0000005 name: chemosensory organ namespace: uberon subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000007 name: pituitary gland namespace: uberon def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator] comment: Terminology note: hypophysis and pituitary gland are often used informally as synonyms, but the hypophysis also includes the small infundibular or pituitary stalk[Neumann 2020] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "glandula pituitaria" EXACT OMO:0003011 [Wikipedia:Pituitary_gland] synonym: "Hp" BROAD OMO:0003000 [BIRNLEX:1353, NIFSTD:NeuroNames_abbrevSource] synonym: "hypophysis" RELATED [ZFA:0000118] synonym: "hypophysis cerebri" RELATED [MA:0000176] synonym: "pituitary" EXACT [BTO:0001073] synonym: "pituitary body" EXACT [BTO:0001073] xref: AAO:0010536 xref: BAMS:PIT xref: BAMS:Pit xref: BIRNLEX:1353 xref: BM:Die-Hy-HY xref: BTO:0001073 xref: CALOHA:TS-0798 xref: DHBA:10505 xref: EFO:0000857 xref: EHDAA2:0001471 xref: EHDAA:2183 xref: EHDAA:4477 xref: EMAPA:35998 xref: EV:0100132 xref: FMA:13889 xref: GAID:457 xref: HBA:4634 xref: MA:0000176 xref: MAT:0000077 xref: MESH:D010902 xref: MIAA:0000077 xref: NCIT:C12399 xref: neuronames:399 {source="BIRNLEX:1353"} xref: SCTID:181125003 xref: TAO:0000118 xref: UMLS:C0032005 {source="ncithesaurus:Pituitary_Gland", source="BIRNLEX:1353"} xref: VHOG:0000143 xref: Wikipedia:Pituitary_gland xref: XAO:0000017 xref: ZFA:0000118 is_a: UBERON:0003296 ! gland of diencephalon relationship: part_of UBERON:0001894 {source="MA", source="ZFA"} ! diencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png" xsd:anyURI property_value: UBPROP:0000001 "An endocrine gland derived from infundibulum of the floor of the diencephalon and an ectodermal dorsal protrusion from the buccal cavity which controls the secretion of many hormones influencing the function of various organs of the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010536", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000118", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000143", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "The lamprey possesses a distinct pituitary organ and hormones, the ascidian does not show distinct evidence of them [Sower S, Freamat M, Kavanaugh S. The origins of the vertebrate hypothalamic-pituitary-gonadal (HPG) and hypothalamic-pituitary-thyroid (HPT) endocrine systems: new insights from lampreys. Gen Comp Endocrinol 2009;161:20-9]" xsd:string [Term] id: UBERON:0000010 name: peripheral nervous system namespace: uberon def: "A major division of the nervous system that contains nerves which connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands." [GO:0007422] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pars peripherica" EXACT OMO:0003011 [FMA:9903, FMA:TA, Wikipedia:Peripheral_nervous_system] synonym: "PNS" BROAD OMO:0003000 [] synonym: "systema nervosum periphericum" EXACT OMO:0003011 [FMA:9903, FMA:TA, Wikipedia:Peripheral_nervous_system] xref: AAO:0000429 xref: BAMS:PNS xref: BILA:0000081 xref: BIRNLEX:1111 xref: BTO:0001028 xref: CALOHA:TS-0808 xref: EFO:0000891 xref: EHDAA2:0001445 xref: EHDAA:2893 xref: EMAPA:16665 xref: EV:0100335 xref: FBbt:00005098 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9903 xref: GAID:715 xref: MA:0000218 xref: MAT:0000338 xref: MESH:D017933 xref: MIAA:0000338 xref: NCIT:C12465 xref: neuronames:3232 xref: SCTID:362292005 xref: TAO:0000142 xref: UMLS:C0206417 {source="ncithesaurus:Peripheral_Nervous_System", source="BIRNLEX:1111"} xref: UMLS:C1305921 {source="BIRNLEX:1111"} xref: VHOG:0000399 xref: Wikipedia:Peripheral_nervous_system xref: XAO:0000178 xref: ZFA:0000142 relationship: part_of UBERON:0001016 ! nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Nervous structures including ganglia outside of the central nervous system. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000142", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Part of nervous system in which nerves extend throughout the body outside of the brain and spinal cord.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000429", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The peripheral nervous system (PNS) is the part of the nervous system connected to the CNS which contains cranial nerves III - XII, spinal, peripheral and autonomic nerves. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: UBPROP:0000003 "(...) specific vertebrate traits within the chordate phylum such as skeletal tissues, PNS, and spectacular head and brain development, are linked to the NC (neural crest) and its derivatives.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000399", ontology="VHOG", source="DOI:10.1007/978-0-387-46954-6_6 Dupin E, Creuzet S, Le Douarin NM, The contribution of the neural crest to the vertebrate body. Advances in experimental medicine and biology (2006)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000011 name: parasympathetic nervous system namespace: uberon def: "The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia[GO]." [GO:0048486] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "parasympathetic part of autonomic division of nervous system" EXACT [] synonym: "pars parasympathica divisionis autonomici systematis nervosi" EXACT OMO:0003011 [FMA:9907, FMA:TA] synonym: "pars parasympathica divisionis autonomici systematis nervosi" RELATED OMO:0003011 [Wikipedia:Parasympathetic_nervous_system] synonym: "PNS - parasympathetic" EXACT [] xref: AAO:0010488 xref: BIRNLEX:2517 xref: BTO:0001833 xref: CALOHA:TS-2094 xref: EFO:0000894 xref: EHDA:10096 xref: EHDAA2:0001402 xref: EHDAA:4655 xref: EMAPA:17270 xref: FMA:9907 xref: GAID:708 xref: MA:0000223 xref: MAT:0000101 xref: MESH:D010275 xref: MIAA:0000101 xref: NCIT:C12764 xref: SCTID:362496006 xref: TAO:0001575 xref: UMLS:C0030510 {source="BIRNLEX:2517", source="ncithesaurus:Parasympathetic_Nervous_System"} xref: UMLS:C1305770 {source="BIRNLEX:2517"} xref: VHOG:0000755 xref: Wikipedia:Parasympathetic_nervous_system xref: ZFA:0001575 relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="WP", source="ZFA-modified-from-isa"} ! autonomic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI property_value: UBPROP:0000001 "Part of the autonomic nervous system which has opposing physiological effects of the sympathetic nervous system. Examples include decreasing the heart rate or dilating the blood vessels.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010488", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "In mammals, the autonomic nervous system is divided into two contrasting, antagonistic systems of control over visceral activity: the sympathetic system and the parasympathetic system (reference 1); In general, the teleosts may be considered phylogenetically the first class of vertebrates in which the heart is regulated by both sympathetic and parasympathetic neural pathways (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000755", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.634, DOI:10.1016/S0306-4530(98)00057-2 Porges SW, Love: an emergent property of the mammalian autonomic nervous system. Psychoneuroendocrinology (1998)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000012 name: somatic nervous system namespace: uberon def: "Part of peripheral nervous system that includes the somatic parts of the cranial and spinal nerves and their ganglia and the peripheral sensory receptors." [NLXANAT:100301] subset: pheno_slim subset: uberon_slim synonym: "PNS - somatic" EXACT [] synonym: "somatic nervous system, somatic division" EXACT [NLXANAT:100301] synonym: "somatic part of peripheral nervous system" EXACT [UBERON:cjm] synonym: "somatic peripheral nervous system" EXACT [NLXANAT:100301] xref: EFO:0000892 xref: FMA:9904 xref: MA:0002850 xref: MAT:0000099 xref: MIAA:0000099 xref: NLXANAT:100301 xref: Wikipedia:Somatic_nervous_system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0000013 name: sympathetic nervous system namespace: uberon def: "The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [GO:0048485] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pars sympathica divisionis autonomici systematis nervosi" EXACT OMO:0003011 [FMA:9906, FMA:TA] synonym: "pars sympathica divisionis autonomici systematis nervosi" RELATED OMO:0003011 [Wikipedia:Sympathetic_nervous_system] synonym: "sympathetic nervous system" EXACT [] synonym: "sympathetic part of autonomic division of nervous system" EXACT [] xref: AAO:0010487 xref: BIRNLEX:2516 xref: BTO:0001832 xref: CALOHA:TS-2050 xref: EFO:0000893 xref: EHDAA2:0001971 xref: EHDAA:3769 xref: EMAPA:16985 xref: FMA:9906 xref: GAID:710 xref: MA:0000225 xref: MESH:D013564 xref: MIAA:0000100 xref: NCIT:C12795 xref: SCTID:362484004 xref: TAO:0001576 xref: UMLS:C0039044 {source="BIRNLEX:2516", source="ncithesaurus:Sympathetic_Nervous_System"} xref: UMLS:C1269646 {source="BIRNLEX:2516"} xref: VHOG:0000384 xref: Wikipedia:Sympathetic_nervous_system xref: ZFA:0001576 relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="ZFA-modified-from-isa"} ! autonomic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: UBPROP:0000001 "Part of the autonomic nervous system which has opposing physiological effects of the parasympathetic nervous system. Examples include increasing the heart rate or constricting the blood vessels.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010487", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The part of the autonomic nervous system which chiefly contains adrenergic fibres and tends to control and reduce secretions, decrease the contractility and hence the tone of smooth muscles and provoke the contraction of blood vessels. Essentially, it consists of preganglionic fibres from the thoracic and upper lumbar parts of the spinal cord. These fibres, by means of delicate rami communicantes, cross over to ganglia sited in a pair of ganglionated cords on each side of the vertebral column or to more peripheral ganglia. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000384", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The autonomic nervous system is composed of three divisions: the sympathetic division, the parasympathetic division, and the enteric division. (...) In ray-finned teleost fishes, a sympathetic chain is present, and dual innervation of additional organs can be observed. A similar pattern can be found in amphibians (...). The evolution of the autonomic nervous system has been quite conservative, especially in the tetrapod lineage.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000384", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.461-463", source="http://bgee.unil.ch/"} property_value: UBPROP:0000011 "has developmental contribution from NC in verteberates (https://github.com/obophenotype/uberon/wiki/The-neural-crest)" xsd:string [Term] id: UBERON:0000044 name: dorsal root ganglion namespace: uberon alt_id: UBERON:0026602 def: "Sensory ganglia located on the dorsal spinal roots within the vertebral column. The spinal ganglion cells are pseudounipolar. The single primary branch bifurcates sending a peripheral process to carry sensory information from the periphery and a central branch which relays that information to the spinal cord or brain. (MSH) * ganglion found on the posterior root of each spinal nerve, composed of the unipolar nerve cell bodies of the sensory neurons of the nerve. (CSP)." [BIRNLEX:2596] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "dorsal root ganglia" RELATED OMO:0003004 [] synonym: "dorsal root ganglion" EXACT [BTO:0001264] synonym: "DRG" RELATED OMO:0003000 [] synonym: "ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "ganglion sensorium nervi spinalis" RELATED OMO:0003011 [BTO:0001264, Wikipedia:Dorsal_root_ganglion] synonym: "ganglion spinale" RELATED [BTO:0001264] synonym: "ganglion spinalis" EXACT [FMA:5888] synonym: "posterior root ganglion" RELATED [EMAPA:16668] synonym: "spinal ganglion" EXACT [FMA:5888] synonym: "spinal ganglion part of peripheral nervous system" EXACT [BIRNLEX:2598] xref: AAO:0011032 xref: BIRNLEX:2596 xref: BIRNLEX:2598 xref: BTO:0001264 xref: CALOHA:TS-0954 xref: EFO:0000900 xref: EHDAA2:0000418 xref: EHDAA2:0001897 xref: EHDAA:2899 xref: EMAPA:16667 xref: EMAPA:16668 xref: EMAPA:18372 xref: EV:0100373 xref: FMA:5888 xref: MA:0000231 xref: MA:0000232 xref: MAT:0000162 xref: MESH:D005727 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000162 xref: NCIT:C12462 xref: SCTID:244455004 xref: TAO:0000200 xref: UMLS:C0017070 {source="ncithesaurus:Dorsal_Root_Ganglion", source="BIRNLEX:2596"} xref: VHOG:0000222 xref: Wikipedia:Dorsal_root_ganglion xref: XAO:0000210 xref: ZFA:0000200 is_a: UBERON:0001800 {source="MA"} ! sensory ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/71/DRG_Chicken_e7.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd:string property_value: UBPROP:0000001 "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000200", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "From comparative analyses of craniate brains, a morphotype of the brain in the earliest craniate stock can be constructed. In marked contrast to cephalochordates, the ancestral craniate morphotype had a plethora of unique features, which included a telencephalon with pallial and subpallial parts, paired olfactory bulbs with substantial projections to most or all of the telencephalic pallium, paired lateral eyes and ears, a lateral line system for both electroreception and mechanoreception, spinal cord dorsal root ganglia, and an autonomic nervous system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000222", ontology="VHOG", source="DOI:10.1002/1097-0185(20000615)261:3<111::AID-AR6>3.0.CO;2-F Butler AB, Chordate evolution and the origin of craniates: An old brain in a new head. AnaT Rec (New Anat) (2000)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000011 "The sensory ganglia of spinal nerves arise only from the neural crest, whereas many sensory ganglia of the 'dorsal' cranial nerves arise from epibranchial placodes as well as the neural crest[DOI:10.1093/icb/icn065]" xsd:string property_value: UBPROP:0000012 "MA and EMAPA introduce distinct classes for what appears to be the same thing" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000045 name: ganglion namespace: uberon def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Ganglion] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglia" RELATED [] synonym: "neural ganglion" RELATED [BTO:0000497] xref: AAO:0010426 xref: AEO:0000135 xref: BAMS:G xref: BTO:0000497 xref: CALOHA:TS-0397 xref: EFO:0000899 xref: EHDAA2:0003135 xref: EHDAA:2897 xref: EHDAA:4662 xref: EHDAA:5621 xref: EHDAA:918 xref: EMAPA:32846 xref: EV:0100372 xref: FMA:5884 xref: MA:0002406 xref: MAT:0000207 xref: MAT:0000343 xref: MESH:D005724 xref: MIAA:0000207 xref: MIAA:0000343 xref: NCIT:C12719 xref: NLXANAT:100302 xref: TAO:0000190 xref: TGMA:0001016 xref: UMLS:C0017067 {source="ncithesaurus:Ganglion"} xref: VHOG:0000156 xref: WBbt:0005189 xref: Wikipedia:Ganglion xref: XAO:0000209 xref: ZFA:0000190 is_a: UBERON:0000061 {source="https://github.com/obophenotype/uberon/issues/2495#issuecomment-1187364719"} ! anatomical structure relationship: part_of UBERON:0001016 ! nervous system property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: IAO:0000116 "TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A ganglion is a cluster of neurons. It is part of a nervous system. It may include glial cells. The neurons are arranged in a specific constellation: neuronal somata are concentrated at the surface, thus forming a cell cortex, and neurites are concentrated in the centre of the ganglion to form the neuropil. A ganglion is a distinct unit but several ganglia may be anterio-posteriorly joined by connectives or transversally by commissures" xsd:string {source="PMID:21062451"} property_value: UBPROP:0000001 "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010426", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000190", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Subdivision of nervous system which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord. Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion (adapted from Foundational Model of Anatomy)[NLXANAT:100302]." xsd:string {source="NLXANAT:100302"} property_value: UBPROP:0000003 "Cranial sensory placodes are focused areas of the head ectoderm of vertebrates that contribute to the development of the cranial sense organs and their associated ganglia. Placodes have long been considered a key character of vertebrates, and their evolution is proposed to have been essential for the evolution of an active predatory lifestyle by early vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000156", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.021 Mazet F, Hutt JA, Milloz J, Millard J, Graham A, Shimeld SM, Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes. Developmental Biology (2005)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "ganglionic" xsd:string [Term] id: UBERON:0000052 name: fornix of brain namespace: uberon def: "A C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM)." [BIRNLEX:705] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brain fornix" EXACT [] synonym: "cerebral fornix" EXACT [] synonym: "forebrain fornix" EXACT [FMA:61965] synonym: "fornix" BROAD [] synonym: "fornix (column and body of fornix)" RELATED [FMA:61965] synonym: "fornix cerebri" RELATED OMO:0003011 [NeuroNames:268] synonym: "fornix hippocampus" RELATED [] synonym: "fornix of neuraxis" EXACT [FMA:83865] synonym: "hippocampus fornix" RELATED [] synonym: "neuraxis fornix" EXACT [FMA:83865] xref: BAMS:f xref: BIRNLEX:705 xref: DHBA:10576 xref: DMBA:17767 xref: EMAPA:35352 xref: FMA:61965 {notes="inferred"} xref: FMA:83865 xref: HBA:9249 xref: MA:0002747 xref: NCIT:C32289 xref: neuronames:268 {source="BIRNLEX:705"} xref: SCTID:279302004 xref: UMLS:C0152334 {source="BIRNLEX:705"} xref: UMLS:C0458370 {source="ncithesaurus:Cerebral_Fornix"} xref: Wikipedia:fornix_of_brain is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000053 name: macula lutea namespace: uberon def: "An oval area in the retina, usually located temporal to the posterior pole of the eye and slightly below the level of the optic disk. It is characterized by the presence of a yellow pigment diffusely permeating the inner layers, contains the fovea centralis in its center, and provides the best phototopic visual acuity. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)." [MESH:A09.371.729.522] subset: pheno_slim subset: uberon_slim synonym: "macula" RELATED [] synonym: "macula flava retinae" RELATED [BTO:0003015] synonym: "macula retinae" RELATED [BTO:0003015] synonym: "maculae" RELATED [] xref: BIRNLEX:2540 xref: BTO:0003015 xref: EMAPA:36516 xref: EV:0100349 xref: FMA:58637 xref: GAID:909 xref: MA:0001306 xref: MESH:D008266 xref: NCIT:C26464 xref: NCIT:C33044 xref: SCTID:362517001 xref: UMLS:C0450295 {source="ncithesaurus:Macula_Lutea", source="BIRNLEX:2540"} xref: UMLS:C1284755 {source="BIRNLEX:2540"} xref: Wikipedia:Macula_of_retina relationship: part_of UBERON:0000966 ! retina property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png" xsd:anyURI [Term] id: UBERON:0000061 name: anatomical structure namespace: uberon def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: common_anatomy subset: upper_level synonym: "biological structure" EXACT [] synonym: "connected biological structure" EXACT [CARO:0000003] xref: AAO:0010825 xref: AEO:0000003 xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 xref: FBbt:00007001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:305751 xref: FMA:67135 xref: GAID:781 xref: HAO:0000003 xref: http://dbpedia.org/ontology/AnatomicalStructure xref: MA:0003000 xref: MESH:D000825 xref: SCTID:362889002 xref: TAO:0000037 xref: TGMA:0001823 xref: VHOG:0001759 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000073 name: regional part of nervous system namespace: uberon def: "Any part or collection of parts of the central or peripheral nervous system. Parts may span both CNS and PNS." [BIRNLEX:1157] subset: non_informative subset: upper_level synonym: "part of nervous system" EXACT [BIRNLEX:1157] xref: BIRNLEX:1157 xref: NCIT:C13040 xref: SCTID:25087005 xref: UMLS:C1518256 {source="ncithesaurus:Nervous_System_Part"} relationship: part_of UBERON:0001016 ! nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-9114-8737 creation_date: 2009-06-18T09:00:04Z [Term] id: UBERON:0000120 name: blood brain barrier namespace: uberon def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier] synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: http://uri.neuinfo.org/nif/nifstd/nlx_subcell_100205 xref: MESH:D001812 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13194 xref: UMLS:C0005854 {source="ncithesaurus:Blood-Brain_Barrier"} xref: Wikipedia:Blood-brain_barrier relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000121 name: perineurium namespace: uberon def: "A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. The perineurium is a component of the blood–nerve barrier and is essential for protecting axons and their associated Schwann cells from ionic flux, toxins and infection." [NLXANAT:090205, PMID:18434767, PMID:25818566] xref: BTO:0003153 xref: EMAPA:37849 {source="MA:th"} xref: FMA:52585 xref: NCIT:C33302 xref: NCIT:C41407 xref: NLXANAT:090205 xref: SCTID:362299001 xref: UMLS:C0205890 {source="ncithesaurus:Perineurium"} xref: Wikipedia:Perineurium relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0001019 ! nerve fasciculus relationship: part_of UBERON:0003209 ! blood nerve barrier property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png" xsd:anyURI property_value: UBPROP:0000001 "Connective tissue surrounding a fascicle[Wikipedia:Perineurium]." xsd:string {source="Wikipedia:Perineurium"} property_value: UBPROP:0000007 "perineurial" xsd:string property_value: UBPROP:0000012 "consider FBbt:00007090 (perineurium): The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the sub-perineural glial sheath (sometimes referred to as the perineurial sheath inner layer)" xsd:string {external_ontology="FBbt"} [Term] id: UBERON:0000122 name: neuron projection bundle namespace: uberon alt_id: UBERON:0005163 def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS] synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [FBbt:00005099] synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 xref: FBbt:00005099 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NLX:147821 relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000123 name: endoneurium namespace: uberon def: "The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition)." [NLXANAT:090202] xref: EMAPA:37847 {source="MA:th"} xref: FMA:52586 xref: NCIT:C32518 xref: NLXANAT:090202 xref: SCTID:15931004 xref: UMLS:C0205888 {source="ncithesaurus:Endoneurium"} xref: Wikipedia:Endodeurium relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0006134 ! nerve fiber property_value: UBPROP:0000001 "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus[Wikipedia:Endodeurium]." xsd:string {source="Wikipedia:Endodeurium"} [Term] id: UBERON:0000124 name: epineurium namespace: uberon def: "A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition." [NLXANAT:090203] xref: BTO:0003154 xref: EMAPA:37848 {source="MA:th"} xref: FMA:12234 xref: NCIT:C32528 xref: NLXANAT:090203 xref: SCTID:64482002 xref: UMLS:C0205889 {source="ncithesaurus:Epineurium"} xref: Wikipedia:Epineurium relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png" xsd:anyURI property_value: UBPROP:0000001 "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues[Wikipedia:Epineurium]." xsd:string {source="Wikipedia:Epineurium"} [Term] id: UBERON:0000125 name: neural nucleus namespace: uberon def: "A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO)." [NLX:28443] subset: cumbo synonym: "nervous system nucleus" EXACT [] synonym: "neuraxis nucleus" EXACT [FMA:83686] synonym: "neuronal nucleus" EXACT [AEO:0000136] synonym: "nucleus" BROAD [] synonym: "nucleus of CNS" EXACT [NLX:28443] synonym: "nucleus of neuraxis" RELATED [] xref: AEO:0000136 xref: FMA:83686 xref: NCIT:C13197 xref: NLX:28443 xref: Wikipedia:Nucleus_(neuroanatomy) is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001017 {source="CUMBO"} ! central nervous system property_value: UBPROP:0000001 "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO][GO_REF:0000021]." xsd:string {source="GO_REF:0000021"} property_value: UBPROP:0000012 "Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in 'subcortical' because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in 'relatively compact' and 'distiguishable by histology' because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate." xsd:string [Term] id: UBERON:0000126 name: cranial nerve nucleus namespace: uberon def: "Nucleus that receives projections from or contains neurons that send projections through one of the cranial nerves." [NLX:28532] synonym: "cranial neural nucleus" EXACT [FMA:54501] synonym: "nucleus nervi cranialis" RELATED OMO:0003011 [Wikipedia:Cranial_nerve_nucleus] synonym: "nucleus of cranial nerve" EXACT [] xref: EMAPA:37066 {source="MA:th"} xref: FMA:54501 xref: NLX:28532 xref: SCTID:280160003 xref: Wikipedia:Cranial_nerve_nucleus is_a: UBERON:0002308 ! nucleus of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI [Term] id: UBERON:0000127 name: facial nucleus namespace: uberon def: "The group of motor neurons residing in the pons that innervate the muscles of facial expression." [ISBN:0838580343, MP:0000909] subset: pheno_slim synonym: "facial nerve nucleus" EXACT [] synonym: "facial VII motor nucleus" RELATED [MA:0001014] synonym: "facial VII nucleus" EXACT [MA:0001014] synonym: "nucleus of facial nerve" EXACT [FMA:54572] xref: BAMS:7 xref: BAMS:7N xref: BAMS:VII xref: BM:Pons-VII xref: DHBA:12420 xref: EHDAA2:0004638 xref: EMAPA:35338 xref: EV:0100267 xref: FMA:54572 xref: MA:0001014 xref: MESH:D065828 xref: NCIT:C12898 xref: SCTID:280166009 xref: UMLS:C0228740 {source="ncithesaurus:Facial_Nerve_Nucleus"} xref: VHOG:0001412 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons property_value: UBPROP:0000012 "FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial nucleus is distinct from facial motor nucleus." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000128 name: olivary body namespace: uberon def: "Prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei." [Wikipedia:Olivary_body] subset: pheno_slim synonym: "oliva" RELATED OMO:0003011 [Wikipedia:Olivary_body] synonym: "olivary nucleus" RELATED [BTO:0002299] synonym: "olive" RELATED [] synonym: "olive body" EXACT [] xref: BTO:0002299 xref: SCTID:279293003 xref: Wikipedia:Olivary_body relationship: part_of UBERON:0001896 ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png" xsd:anyURI [Term] id: UBERON:0000200 name: gyrus namespace: uberon def: "A ridge on the cerebral cortex. It is generally surrounded by one or more sulci ." [https://github.com/obophenotype/uberon/issues/573, Wikipedia:Gyrus] subset: pheno_slim synonym: "cerebral gyrus" EXACT [BTO:0002495] synonym: "folia" RELATED OMO:0003004 [] synonym: "folium" RELATED [PHENOSCAPE:wd] synonym: "folium of brain" RELATED [] synonym: "gyri" RELATED OMO:0003004 [BTO:0002495] synonym: "gyri of cerebrum" RELATED OMO:0003004 [BTO:0002495] synonym: "gyrus of cerebral hemisphere" RELATED [FMA:83874] synonym: "gyrus of cerebrum" RELATED [BTO:0002495] synonym: "gyrus of neuraxis" EXACT [FMA:83874] synonym: "neuraxis gyrus" EXACT [FMA:83874] xref: BTO:0002495 xref: FMA:83874 xref: NCIT:C32290 xref: neuronames:1211 xref: SCTID:279165009 xref: UMLS:C0458308 {source="ncithesaurus:Cerebral_Gyrus"} xref: Wikipedia:Gyrus relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul property_value: RO:0002174 NCBITaxon:10088 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/573" xsd:anyURI property_value: UBPROP:0000202 FMA:72015 [Term] id: UBERON:0000201 name: endothelial blood brain barrier namespace: uberon def: "A blood brain barrier that is composed of endothelial cells." [https://orcid.org/0000-0002-6601-2165] xref: NIF_Subcellular:nlx_subcell_100205 is_a: UBERON:0000120 ! blood brain barrier property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-04-10T08:15:44Z [Term] id: UBERON:0000202 name: glial blood brain barrier namespace: uberon def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] xref: FBbt:00007091 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000120 ! blood brain barrier property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-6601-2165 creation_date: 2009-04-10T08:42:24Z [Term] id: UBERON:0000203 name: pallium namespace: uberon alt_id: UBERON:0007333 def: "Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://github.com/obophenotype/uberon/issues/287, ISBN:0471888893, Wikipedia:Pallium_(neuroanatomy)] subset: developmental_classification subset: efo_slim synonym: "area dorsalis telencephali" EXACT [ZFA:0000505] synonym: "dorsal part of telencephalon" EXACT [ISBN:0471888893] synonym: "dorsal telencephalic area" EXACT [ZFA:0000505] synonym: "dorsal telencephalon" EXACT [ZFA:0000505] xref: BTO:0003399 xref: DMBA:15903 xref: EFO:0003534 xref: neuronames:3240 xref: SCTID:369224000 xref: TAO:0000505 xref: TAO:0007007 xref: Wikipedia:Avian_pallium xref: Wikipedia:Pallium_(neuroanatomy) xref: ZFA:0000505 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-6601-2165 property_value: RO:0002175 NCBITaxon:7762 {source="PMID:8932866"} property_value: seeAlso "https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/87" xsd:anyURI property_value: UBPROP:0000003 "In the anatomy of animals, an avian pallium is the dorsal telencephalon of a bird's brain. Pallium of avian species tend to be relatively large, comprising ~75% of the telencephalic volume." xsd:string {source="Wikipedia:Avian_pallium", taxon="NCBITaxon:8782"} property_value: UBPROP:0000008 "In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus" xsd:string {source="WP"} creation_date: 2009-04-18T12:03:09Z [Term] id: UBERON:0000204 name: ventral part of telencephalon namespace: uberon def: "Ventral part (base region) of the telencephalon." [GO:0021544, GO_REF:0000021, ISBN:0471888893, PMID:12626695] subset: developmental_classification subset: efo_slim synonym: "area ventralis telencephali" EXACT [ZFA:0000304] synonym: "subpallium" EXACT [GO:0021544, ZFA:0000304] synonym: "subpallium" NARROW [BTO:0003401, NCBITaxon:8782] synonym: "ventral telencephalon" EXACT [ZFA:0000304] xref: BTO:0003401 xref: DMBA:15751 xref: EFO:0003522 xref: TAO:0000304 xref: ZFA:0000304 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-6601-2165 property_value: UBPROP:0000012 "BTO term refers specifically to the avian structure" xsd:string {external_ontology="BTO"} creation_date: 2009-04-18T12:12:27Z [Term] id: UBERON:0000315 name: subarachnoid space namespace: uberon def: "The space between the arachnoid and pia mater." [GOC:add, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1168/, Wikipedia:Subarachnoid_space] subset: pheno_slim synonym: "cavitas subarachnoidea" RELATED OMO:0003011 [BTO:0000230] synonym: "cavum subarachnoideale" RELATED OMO:0003011 [Wikipedia:Subarachnoid_space] synonym: "spatium leptomeningeum" RELATED OMO:0003011 [BTO:0000230] synonym: "spatium subarachnoideum" RELATED OMO:0003011 [BTO:0000230, Wikipedia:Subarachnoid_space] synonym: "subarachnoid cavity" RELATED [BTO:0000230] synonym: "subarachnoid space of central nervous system" EXACT [] synonym: "subarachnoid space of CNS" EXACT [] synonym: "subarachnoid space of neuraxis" EXACT [FMA:322060] xref: BTO:0000230 xref: EMAPA:32666 xref: FMA:83716 xref: GAID:689 xref: MESH:D013346 xref: SCTID:362311001 xref: Wikipedia:Subarachnoid_space relationship: part_of UBERON:0010743 ! meningeal cluster property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png" xsd:anyURI [Term] id: UBERON:0000345 name: myelin namespace: uberon def: "A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath." [Wikipedia:Myelin] subset: pheno_slim xref: BTO:0000894 xref: FMA:62977 xref: ncithesaurus:Myelin xref: Wikipedia:Myelin is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001016 ! nervous system property_value: IAO:0000116 "cede to other ontology. Retired in ncit" xsd:string property_value: RO:0002175 NCBITaxon:6340 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} property_value: RO:0002175 NCBITaxon:6681 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} property_value: RO:0002175 NCBITaxon:7742 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} [Term] id: UBERON:0000348 name: ophthalmic nerve namespace: uberon def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [MP:0009798, Wikipedia:Ophthalmic_nerve] comment: Terminology notes. This nerve is known by a ridiculous number of names[http://palaeos.com/vertebrates/glossary/glossaryPo.html] subset: human_reference_atlas subset: pheno_slim synonym: "ciliary nerve" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] synonym: "cranial nerve V, branch V1" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ethmoidal nerve" RELATED [Wikipedia:Ophthalmic_nerve] synonym: "first branch of fifth cranial nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "first division of fifth cranial nerve" EXACT [FMA:52621] synonym: "first division of trigeminal nerve" EXACT [FMA:52621] synonym: "nervus ophthalmicus (V1)" EXACT [FMA:52621] synonym: "nervus ophthalmicus (Va)" EXACT [FMA:52621] synonym: "nervus ophthalmicus [v1]" EXACT OMO:0003011 [FMA:52621, FMA:TA] synonym: "nervus ophthalmicus [va]" EXACT OMO:0003011 [FMA:52621, FMA:TA] synonym: "ophthalmic division" RELATED [BTO:0000926, Wikipedia:Ophthalmic_nerve] synonym: "ophthalmic division [V1]" EXACT [FMA:52621] synonym: "ophthalmic division [Va]" EXACT [FMA:52621] synonym: "ophthalmic division of fifth cranial nerve" EXACT [FMA:52621] synonym: "ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621] synonym: "ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621] synonym: "ophthalmic nerve [V1]" EXACT [FMA:52621] synonym: "ophthalmic nerve [Va]" EXACT [FMA:52621] synonym: "opthalmic nerve" EXACT [Wikipedia:Ophthalmic_nerve] synonym: "profundal nerve" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "profundus" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] synonym: "profundus nerve" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] synonym: "ramus opthalmicus profundus (ramus V1)" EXACT [AAO:0010648] synonym: "rostral branch of trigeminal nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "trigeminal nerve ophthalmic division" RELATED [EMAPA:17800] synonym: "trigeminal V nerve ophthalmic division" EXACT [MA:0001104] xref: AAO:0010648 xref: BTO:0000926 xref: EHDAA2:0002088 xref: EHDAA:3744 xref: EMAPA:17800 xref: FMA:52621 xref: GAID:837 xref: MA:0001104 xref: MESH:D009882 xref: NCIT:C33215 xref: SCTID:280210000 xref: UMLS:C0029082 {source="ncithesaurus:Ophthalmic_Nerve"} xref: VHOG:0001349 xref: Wikipedia:Ophthalmic_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001645 ! trigeminal nerve property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Sensory medial ramus of the trigeminal nerve.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010648", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "The profundus nerve is a distinct nerve only in fishes. (...) In mammals, the profundus nerve is the same as the most rostral (ophthalmic) branch of the trigeminal nerve.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001349", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.177", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000349 name: limbic system namespace: uberon def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system] comment: includes the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia] subset: non_informative subset: pheno_slim synonym: "visceral brain" RELATED [ISBN:0123813611] xref: BTO:0000928 xref: CALOHA:TS-1307 xref: FMA:242000 xref: GAID:615 xref: MESH:D008032 xref: NCIT:C94541 xref: neuronames:2055 xref: SCTID:361342009 xref: UMLS:C0023715 {source="ncithesaurus:Limbic_System"} xref: Wikipedia:Limbic_system relationship: part_of UBERON:0001890 ! forebrain property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg" xsd:anyURI property_value: IAO:0000116 "obsoletion proposes. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity." xsd:string [Term] id: UBERON:0000369 name: corpus striatum namespace: uberon alt_id: UBERON:0010082 def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum] comment: * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum subset: efo_slim synonym: "striate body" RELATED [BTO:0001311] synonym: "striated body" RELATED [BTO:0001311] xref: BAMS:CSTR xref: BTO:0001311 xref: CALOHA:TS-0183 xref: EFO:0000381 xref: EHDAA2:0000596 xref: EMAPA:17549 xref: EV:0100184 xref: FMA:77616 xref: GAID:667 xref: MESH:D003342 xref: NCIT:C12448 xref: neuronames:2339 xref: SCTID:279318005 xref: UMLS:C0010097 {source="ncithesaurus:Corpus_Striatum"} xref: VHOG:0001175 xref: Wikipedia:Corpus_striatum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002420 {source="MA"} ! basal ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray656.png" xsd:anyURI property_value: UBPROP:0000003 "Thus, certain telencephalic characters - such as the presence of a pallium divided into lateral, dorsal, and medial formations and a subpallium divided into striatum and septum - appear to characterize all vertebrates. They are primitive characters and are homologous among all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001175", ontology="VHOG", source="DOI:10.1146/annurev.ne.04.030181.001505, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.487 Figure 14-10", source="http://bgee.unil.ch/"} property_value: UBPROP:0000013 "The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2]" xsd:string [Term] id: UBERON:0000373 name: tapetum of corpus callosum namespace: uberon def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]." [Wikipedia:Tapetum_of_corpus_callosum] synonym: "tapetum" BROAD INCONSISTENT [FMA:77208] synonym: "tapetum corporis callosi" RELATED OMO:0003011 [Wikipedia:Tapetum_of_corpus_callosum] xref: DHBA:12027 xref: FMA:77208 xref: HBA:265504966 xref: neuronames:1596 xref: SCTID:279312006 xref: Wikipedia:Tapetum_of_corpus_callosum is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png" xsd:anyURI property_value: UBPROP:0000012 "not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0000375 name: mandibular nerve namespace: uberon def: "The motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [MP:0009800, Wikipedia:Mandibular_nerve] subset: human_reference_atlas subset: pheno_slim synonym: "inferior maxillary nerve" EXACT [FMA:52996] synonym: "mandibular division [V3]" EXACT [FMA:52996] synonym: "mandibular division [Vc]" EXACT [FMA:52996] synonym: "mandibular division of fifth cranial nerve" EXACT [FMA:52996] synonym: "mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996] synonym: "mandibular nerve [V3]" EXACT [FMA:52996] synonym: "mandibular nerve [Vc]" EXACT [FMA:52996] synonym: "n. mandibularis" RELATED OMO:0003011 [Wikipedia:Mandibular_nerve] synonym: "nervus mandibularis" RELATED [BTO:0001375] synonym: "nervus mandibularis [v3]" EXACT OMO:0003011 [FMA:52996, FMA:TA] synonym: "nervus mandibularis [Vc; V3]" EXACT [FMA:52996] synonym: "nervus mandibularis [vc]" EXACT OMO:0003011 [FMA:52996, FMA:TA] synonym: "ramus mandibularis (ramus V3)" EXACT [AAO:0010688] synonym: "third division of fifth cranial nerve" EXACT [FMA:52996] synonym: "third division of trigeminal nerve" EXACT [FMA:52996] synonym: "trigeminal nerve mandibular division" RELATED [EMAPA:17798] synonym: "trigeminal V nerve mandibular division" EXACT [MA:0001101] xref: AAO:0010688 xref: AAO:0010703 xref: BTO:0001375 xref: EHDAA2:0002086 xref: EMAPA:17798 xref: FMA:52996 xref: GAID:834 xref: MA:0001101 xref: MESH:D008340 xref: NCIT:C32779 xref: SCTID:280212008 xref: UMLS:C0024695 {source="ncithesaurus:Inferior_Maxillary_Nerve"} xref: VHOG:0001345 xref: Wikipedia:Mandibular_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001645 ! trigeminal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000377 name: maxillary nerve namespace: uberon def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve] subset: human_reference_atlas subset: pheno_slim synonym: "maxillary division [V2]" EXACT [FMA:52724] synonym: "maxillary division [Vb]" EXACT [FMA:52724] synonym: "maxillary division of fifth cranial nerve" EXACT [FMA:52724] synonym: "maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724] synonym: "maxillary nerve [V2]" EXACT [FMA:52724] synonym: "maxillary nerve [Vb]" EXACT [FMA:52724] synonym: "n. maxillaris" RELATED OMO:0003011 [Wikipedia:Maxillary_nerve] synonym: "nervus maxillaris" RELATED [BTO:0001378] synonym: "nervus maxillaris (Vb; V2)" EXACT [FMA:52724] synonym: "nervus maxillaris [v2]" EXACT OMO:0003011 [FMA:52724, FMA:TA] synonym: "nervus maxillaris [vb]" EXACT OMO:0003011 [FMA:52724, FMA:TA] synonym: "ramus maxillaris (ramus V2)" EXACT [AAO:0010670] synonym: "second division of fifth cranial nerve" EXACT [FMA:52724] synonym: "second division of trigeminal nerve" EXACT [FMA:52724] synonym: "trigeminal nerve maxillary division" RELATED [EMAPA:17799] synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103] xref: AAO:0010670 xref: BTO:0001378 xref: EHDAA2:0002087 xref: EMAPA:17799 xref: FMA:52724 xref: GAID:836 xref: MA:0001103 xref: MESH:D008442 xref: SCTID:280211001 xref: VHOG:0001346 xref: Wikipedia:Maxillary_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001645 ! trigeminal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Medial ramus (sensory) of the trigeminal nerve.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010670", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000002 "relationship loss: part_of trunk maxillary-mandibularis (AAO:0010669)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010670", ontology="AAO"} [Term] id: UBERON:0000391 name: leptomeninx namespace: uberon def: "Pia mater or arachnoid mater." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Leptomeninges] subset: organ_slim synonym: "arachnoid mater and pia mater" RELATED [FMA:231515] synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634] synonym: "leptomeninges" EXACT OMO:0003004 [NLXANAT:090207] synonym: "pia-arachnoid" RELATED [BTO:0001634] synonym: "pia-arachnoid of neuraxis" RELATED [FMA:231515] xref: BTO:0001634 xref: CALOHA:TS-0546 xref: FMA:231515 xref: NCIT:C32979 xref: neuronames:2347 xref: NLXANAT:090207 xref: SCTID:362303006 xref: UMLS:C0228126 {source="ncithesaurus:Leptomeninges"} xref: Wikipedia:Leptomeninges is_a: UBERON:0002360 ! meninx property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: IAO:0000116 "check relationship to secondary meninx" xsd:string property_value: UBPROP:0000012 "in FMA/NIF this is a superclass of PM/AM - in BTO it is the mereological sum. We go with superclass here, as we are naming the class in the singular" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000395 name: cochlear ganglion namespace: uberon def: "The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, MP:0002855] subset: pheno_slim synonym: "cochlear part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "Corti's ganglion" EXACT [FMA:53445] synonym: "ganglion cochlearis" RELATED [BTO:0001688] synonym: "ganglion of Corti" EXACT [FMA:53445] synonym: "ganglion spirale" RELATED OMO:0003011 [Wikipedia:Spiral_ganglion] synonym: "ganglion spirale cochleae" RELATED [BTO:0001688] synonym: "spiral ganglion" EXACT [FMA:53445] synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688] synonym: "vestibulocochlear ganglion cochlear component" RELATED [EMAPA:17572] synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085] xref: BAMS:GcVIII xref: BTO:0001688 xref: EHDAA2:0002198 xref: EMAPA:17572 xref: FMA:53445 xref: GAID:722 xref: MA:0001085 xref: MESH:D013136 xref: neuronames:1405 xref: SCTID:368955007 xref: VHOG:0001183 xref: Wikipedia:Spiral_ganglion is_a: UBERON:0001714 ! cranial ganglion relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png" xsd:anyURI property_value: IAO:0000116 "in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems" xsd:string [Term] id: UBERON:0000407 name: sympathetic trunk namespace: uberon def: "One of a a paired bundle of nerve fibers plus ganglia that run from the base of the skull to the coccyx." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Sympathetic_trunk] synonym: "gangliated cord" EXACT [Wikipedia:Sympathetic_trunk] synonym: "sympathetic chain" EXACT [FMA:6258] synonym: "sympathetic ganglionic chain" EXACT [Wikipedia:Sympathetic_trunk] synonym: "truncus sympathicus" RELATED OMO:0003011 [Wikipedia:Sympathetic_trunk] xref: AAO:0010791 xref: BAMS:S xref: BTO:0001834 xref: CALOHA:TS-2049 xref: EV:0100374 xref: FMA:6258 xref: SCTID:181099004 xref: Wikipedia:Sympathetic_trunk xref: XAO:0000211 relationship: part_of UBERON:0000013 ! sympathetic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png" xsd:anyURI [Term] id: UBERON:0000408 name: vertebral ganglion namespace: uberon def: "Any of a group of sympathetic ganglia which form two chains extending from the base of the skull to the coccyx along the sides of the spinal column." [BTO:0001835] synonym: "intermediate ganglion" EXACT [FMA:6572] xref: BTO:0001835 xref: FMA:6572 xref: SCTID:176596009 is_a: UBERON:0001806 {source="BTO", source="Wikipedia"} ! sympathetic ganglion is_a: UBERON:0001807 ! paravertebral ganglion relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0000411 name: visual cortex namespace: uberon def: "The part of the occipital lobe responsible for processing visual information." [Wikipedia:Visual_cortex] comment: The visual cortex is made up of Brodmann area 17 (the primary visual cortex), and Brodmann area 18 and Brodmann area 19, the extrastriate cortical areas, in humans. subset: efo_slim synonym: "higher-order visual cortex" RELATED [FMA:242644] synonym: "visual areas" RELATED [BAMS:VIS] xref: BAMS:VIS xref: BTO:0001857 xref: CALOHA:TS-1117 xref: EFO:0000916 xref: EMAPA:36446 xref: EV:0100171 xref: FMA:242644 xref: GAID:679 xref: MBA:669 xref: MESH:D014793 xref: neuronames:1911 xref: Wikipedia:Visual_cortex is_a: UBERON:0035014 {source="cjm"} ! functional part of brain is_a: UBERON:8440011 ! cortical visual area relationship: part_of UBERON:0002021 ! occipital lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png" xsd:anyURI [Term] id: UBERON:0000416 name: subdural space namespace: uberon def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, PMID:8421539, Wikipedia:Subdural_space] synonym: "cavum subdurale" RELATED OMO:0003011 [BTO:0002082, Wikipedia:Subdural_space] synonym: "spatium subdurale" RELATED OMO:0003011 [BTO:0002082, Wikipedia:Subdural_space] synonym: "subdural cavity" RELATED [BTO:0002082] synonym: "subdural cleavage" RELATED [BTO:0002082] synonym: "subdural cleft" RELATED [BTO:0002082] xref: BTO:0002082 xref: FMA:83803 xref: GAID:692 xref: MESH:D013355 xref: SCTID:362308002 xref: Wikipedia:Subdural_space relationship: part_of UBERON:0010743 ! meningeal cluster property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg" xsd:anyURI property_value: IAO:0000116 "consider obsoleting - see PMID:8421539" xsd:string [Term] id: UBERON:0000429 name: enteric plexus namespace: uberon alt_id: UBERON:0012372 def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437] subset: human_reference_atlas synonym: "enteric nerve plexus" EXACT [FMA:77597] synonym: "intrinsic nerve plexus" EXACT [MA:0001147] synonym: "plexus entericus" EXACT [BTO:0002437] synonym: "plexus nervosus entericus" EXACT OMO:0003011 [FMA:77597, FMA:TA] synonym: "sympathetic enteric nerve plexus" EXACT [FMA:77597] xref: BTO:0002437 xref: EMAPA:35446 xref: FMA:77597 xref: MA:0001147 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0002005 ! enteric nervous system property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000430 name: ventral intermediate nucleus of thalamus namespace: uberon def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469] subset: vertebrate_core synonym: "intermediate thalamic nuclei" RELATED OMO:0003004 [ZFA:0000370] synonym: "intermediate thalamic nucleus" RELATED [TAO:0000370] synonym: "nucleus ventralis intermedius thalami" RELATED [BTO:0002469] xref: BTO:0002469 xref: EV:0100208 xref: FMA:84347 xref: TAO:0000370 xref: ZFA:0000370 is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 {source="BTO-definition", source="ZFA"} ! ventral thalamus [Term] id: UBERON:0000431 name: ventral medial complex of thalamus namespace: uberon def: "A group of nuclei located in the medial portion of the ventral thalamic nuclei." [BTO:0002470] synonym: "nuclei ventrales mediales thalami" RELATED OMO:0003011 [BTO:0002470] synonym: "set of ventral medial nuclei of thalamus" RELATED [FMA:77795] synonym: "ventral medial complex of thalamus" EXACT [FMA:77795] synonym: "ventral medial nuclei of thalamus" EXACT [FMA:77795] xref: BTO:0002470 xref: FMA:77795 is_a: UBERON:0010009 {source="FMA"} ! aggregate regional part of brain relationship: part_of UBERON:0002776 {source="BTO-modified"} ! ventral nuclear group [Term] id: UBERON:0000432 name: endopeduncular nucleus namespace: uberon def: "A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human." [MESH:A08.186.211.730.385.800.240] comment: The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN] synonym: "entopeduncular nucleus" RELATED [] synonym: "nucleus endopeduncularis" RELATED [BTO:0002475] synonym: "nucleus entopeduncularis" RELATED [] xref: BAMS:EN xref: BTO:0002475 xref: DHBA:13057 xref: FMA:77691 xref: MESH:D020392 xref: neuronames:2284 xref: SCTID:82705008 is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0009641 {source="NN"} ! ansa lenticularis [Term] id: UBERON:0000433 name: posterior paraventricular nucleus of thalamus namespace: uberon def: "The posterior of the two nuclei paraventriculares thalami." [BTO:0002456] synonym: "caecal epithelium" RELATED [BTO:0002477] synonym: "dorsal paraventricular nucleus of thalamus" EXACT [FMA:76961] synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002456, BTO:0002477] synonym: "posterior paraventricular nuclei" RELATED [BTO:0002456] synonym: "posterior paraventricular nucleus of thalamus" RELATED [BTO:0002456] synonym: "posterior paraventricular nucleus of the thalamus" RELATED [BAMS:PARP] xref: BAMS:PARP xref: BTO:0002456 xref: FMA:76961 xref: HBA:4536 is_a: UBERON:0001920 ! paraventricular nucleus of thalamus [Term] id: UBERON:0000434 name: anterior paraventricular nucleus of thalamus namespace: uberon def: "The anterior of the two nuclei paraventriculares thalami." [BTO:0002455, Dorlands_Medical_Dictionary:MerckSource] synonym: "anterior paraventricular nuclei" RELATED [BTO:0002455] synonym: "anterior paraventricular nucleus" EXACT [BTO:0002455] synonym: "anterior paraventricular nucleus of thalamus" RELATED [BTO:0002455] synonym: "anterior paraventricular nucleus of the thalamus" RELATED [BAMS:PARA] synonym: "anterior periventricular nucleus of the hypothalamus" RELATED [BAMS:PVa] synonym: "nucleus paraventricularis anterior thalami" RELATED [BTO:0002455, BTO:0002478] synonym: "periventricular hypothalamic nucleus, anterior part" RELATED [BAMS:PVa] synonym: "ventral paraventricular nucleus of thalamus" EXACT [FMA:76962] xref: BAMS:PARA xref: BAMS:PVa xref: BTO:0002455 xref: DMBA:16400 xref: FMA:76962 xref: HBA:12906 xref: MBA:30 xref: neuronames:2928 is_a: UBERON:0001920 ! paraventricular nucleus of thalamus [Term] id: UBERON:0000435 name: lateral tuberal nucleus namespace: uberon def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481] comment: The lateral tuberal nucleus is specific to humans and higher primates, however, this term is sometimes used loosely. If using for rodents, please use tuberal nucleus (sensu Rodentia) instead. If refering to the nucleus lateralis tuberis of fish, please use nucleus lateralis tuberis system (sensu Teleostei) {xref="PMID:29976824", xref="PMID:29976812", xref="DOI:10.1016/0016-6480(71)90165-1", xref="PMID:1362279"} subset: human_reference_atlas synonym: "lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [BIRNLEX:1206] synonym: "lateral tuberal nuclei" EXACT [FMA:62336] synonym: "LTu" BROAD OMO:0003000 [BIRNLEX:1206, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei tuberales laterales" RELATED [BTO:0002481] synonym: "nucleus tuberis" RELATED OMO:0003011 [NeuroNames:428] synonym: "nucleus tuberis hypothalami" RELATED OMO:0003011 [NeuroNames:428] synonym: "nucleus tuberis lateralis" RELATED OMO:0003011 [NeuroNames:428] xref: BAMS:LTu xref: BIRNLEX:1206 xref: BM:TU xref: BTO:0002481 xref: DHBA:10493 xref: EV:0100240 xref: FMA:62336 xref: HBA:12915 xref: neuronames:428 {source="BIRNLEX:1206"} xref: UMLS:C0086527 {source="BIRNLEX:1206"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000437 name: arachnoid barrier layer namespace: uberon def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498] xref: BTO:0002498 xref: FMA:231559 relationship: part_of UBERON:0000201 {source="cjm"} ! endothelial blood brain barrier relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater [Term] id: UBERON:0000439 name: arachnoid trabecula namespace: uberon def: "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges." [Wikipedia:Arachnoid_trabeculae] synonym: "arachnoid trabeculae" RELATED OMO:0003004 [] synonym: "trabecula arachnoideum" RELATED OMO:0003011 [] xref: BTO:0002500 xref: FMA:83979 xref: Wikipedia:Arachnoid_trabeculae relationship: part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000445 name: habenular trigone namespace: uberon def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [Wikipedia:Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies synonym: "trigone of habenulae" RELATED [BTO:0002700] synonym: "trigonum habenulae" RELATED OMO:0003011 [BTO:0002700, Wikipedia:Habenular_trigone] xref: BAMS:hbt xref: BTO:0002700 xref: FMA:74868 xref: neuronames:293 xref: Wikipedia:Habenular_trigone is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0000446 name: septum of telencephalon namespace: uberon def: "Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996)." [BIRNLEX:963] subset: pheno_slim synonym: "area septalis" EXACT OMO:0003011 [FMA:61842, FMA:TA] synonym: "massa praecommissuralis" RELATED OMO:0003011 [NeuroNames:255] synonym: "Se" BROAD OMO:0003000 [PMID:23375746] synonym: "septal area" EXACT [FMA:61842] synonym: "septal region" RELATED [BAMS:SEP] synonym: "septum" BROAD [BIRNLEX:963] synonym: "septum (NN)" EXACT [FMA:61842] synonym: "septum pellucidum (BNA,PNA)" RELATED OMO:0003011 [NeuroNames:255] synonym: "septum telencephali" RELATED OMO:0003011 [NeuroNames:255] synonym: "telencephalon septum" EXACT [FMA:61842] xref: BAMS:SA xref: BAMS:SEP xref: BAMS:Sep xref: BAMS:Spt xref: BIRNLEX:963 xref: BM:Tel-Spt xref: BTO:0002705 xref: EMAPA:32837 xref: FMA:61842 xref: MA:0000924 xref: neuronames:255 {source="BIRNLEX:963"} xref: UMLS:C0752060 {source="BIRNLEX:963"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: UBPROP:0000001 "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA][FMA:61842]." xsd:string {source="FMA:61842"} [Term] id: UBERON:0000451 name: prefrontal cortex namespace: uberon def: "The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia." [NLXANAT:090801] subset: efo_slim synonym: "frontal association cortex" RELATED PENDING_REVIEW [MA:0000906] synonym: "prefrontal association complex" RELATED [BTO:0002807] synonym: "prefrontal association cortex" EXACT [FMA:224850] xref: BAMS:FrA xref: BTO:0002807 xref: DHBA:10172 xref: EFO:0001384 xref: EMAPA:35356 xref: FMA:224850 xref: GAID:676 xref: MA:0000906 xref: MESH:D017397 xref: neuronames:1072 xref: NLXANAT:090801 xref: Wikipedia:Prefrontal_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001870 ! frontal cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/59/Gray726-Brodman-prefrontal.svg" xsd:anyURI property_value: IAO:0000116 "TODO - check MA" xsd:string [Term] id: UBERON:0000454 name: cerebral subcortex namespace: uberon def: "The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain." [ncithesaurus:Cerebral_Subcortex] subset: pheno_slim synonym: "cerebral medulla" EXACT [FMA:242188] synonym: "subcortex" RELATED [BTO:0002858] xref: BTO:0002858 xref: FMA:242188 xref: NCIT:C98712 xref: UMLS:C0815008 {source="ncithesaurus:Cerebral_Subcortex"} relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0000465 name: material anatomical entity namespace: uberon def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level xref: AAO:0010264 xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 xref: FBbt:00007016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 xref: TGMA:0001826 xref: VHOG:0001721 is_a: BFO:0000040 ! material entity is_a: UBERON:0001062 ! anatomical entity property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000467 name: anatomical system namespace: uberon def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011] subset: common_anatomy subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "anatomical systems" RELATED OMO:0003004 [ZFA:0001439] synonym: "body system" EXACT [BIRNLEX:14] synonym: "connected anatomical system" EXACT [CARO:0000011] synonym: "organ system" EXACT [] synonym: "system" BROAD [GO:0048731] xref: AAO:0000007 xref: AEO:0000011 xref: BILA:0000011 xref: BIRNLEX:14 xref: BSA:0000049 xref: CALOHA:TS-2088 xref: CARO:0000011 xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 xref: FBbt:00004856 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 xref: IDOMAL:0002460 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: MA:0000003 xref: NCIT:C12919 xref: SCTID:278195005 xref: TAO:0001439 xref: TGMA:0001831 xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"} xref: VHOG:0001725 xref: WBbt:0005746 xref: WBbt:0005763 xref: Wikipedia:Organ_system xref: XAO:0003002 xref: ZFA:0001439 is_a: UBERON:0000061 ! anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso EHDAA2:0001330 [Term] id: UBERON:0000908 name: hippocampal commissure namespace: uberon def: "The triangular subcallosal plate of commissural fibers resulting from the converging of the right and left fornix bundles which exchange numerous fibers and which curve back in the contralateral fornix to end in the hippocampus of the opposite side." [ISBN:0-683-40008-8, MP:0008221] subset: pheno_slim subset: uberon_slim synonym: "commissura hippocampi" EXACT OMO:0003011 [FMA:61970, FMA:TA] synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix] synonym: "commissure of fornix of forebrain" EXACT [FMA:61970] synonym: "commissure of the fornix" RELATED [BAMS:FC, BAMS:FG] synonym: "delta fornicis" EXACT [MP:0008221] synonym: "dorsal hippocampal commissure" EXACT [FMA:61970] synonym: "fornical commissure" EXACT [FMA:61970] synonym: "fornix commissure" EXACT [FMA:61970] synonym: "hippocampal commissures" RELATED [BAMS:hc] synonym: "hippocampus commissure" EXACT [MP:0008221] xref: BAMS:cfx xref: BAMS:dhc xref: BAMS:FC xref: BAMS:FG xref: BAMS:hc xref: BIRNLEX:746 xref: DHBA:10560 xref: DMBA:17769 xref: EMAPA:35404 xref: FMA:61970 xref: HBA:9228 xref: MA:0002723 xref: MBA:618 xref: neuronames:273 xref: SCTID:369115003 xref: UMLS:C0228287 {source="BIRNLEX:746"} xref: Wikipedia:Commissure_of_fornix is_a: UBERON:0005340 {source="MP"} ! dorsal telencephalic commissure relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png" xsd:anyURI [Term] id: UBERON:0000929 name: pharyngeal branch of vagus nerve namespace: uberon def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_part_of_vagus_nerve] subset: uberon_slim synonym: "pharyngeal branch" EXACT [FMA:6234] synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234] synonym: "pharyngeal branch of vagus" EXACT [FMA:6234] synonym: "ramus pharyngealis nervi vagalis" EXACT [FMA:6234] synonym: "ramus pharyngeus" EXACT OMO:0003011 [FMA:6234, FMA:TA] synonym: "ramus pharyngeus nervi vagi" RELATED OMO:0003011 [Wikipedia:Pharyngeal_part_of_vagus_nerve] synonym: "tenth cranial nerve pharyngeal branch" EXACT [FMA:6234] synonym: "vagal pharyngeal branch" EXACT [FMA:6234] synonym: "vagus nerve pharyngeal branch" EXACT [FMA:6234] xref: FMA:6234 xref: SCTID:280298006 xref: Wikipedia:Pharyngeal_part_of_vagus_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001759 ! vagus nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI [Term] id: UBERON:0000934 name: ventral nerve cord namespace: uberon def: "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." [BTO:0002328, GO:0007419, WB:Paper00000938, Wikipedia:Ventral_nerve_cord] subset: efo_slim subset: uberon_slim synonym: "ventral cord" EXACT [GO:0007419] xref: BTO:0002328 xref: EFO:0000896 xref: FBbt:00005097 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000339 xref: MIAA:0000339 xref: NLX:146329 xref: WBbt:0005829 xref: Wikipedia:Ventral_nerve_cord is_a: UBERON:0005053 ! primary nerve cord property_value: RO:0002161 NCBITaxon:7711 property_value: UBPROP:0000001 "A cluster of neurons that extends posteriorly from the embryonic and larval brain and is surrounded by a connective tissue sheath." xsd:string {source="FBbt:00001102"} property_value: UBPROP:0000008 "The ventral nerve cords make up the nervous system of some phyla of the invertebrates, particularly within the nematodes, annelids and the arthropods. It usually consists of cerebral ganglia anteriorly with the nerve cords running down the ventral ('belly', as opposed to back) plane of the organism. This characteristic is important in qualifying the difference compared to the chordates, which have a dorsal nerve cord. Ventral nerve cords from anterior to posterior (the thoracic and abdominal tagma in the arthropods) are made up of segmented ganglia that are connected by a tract of nerve fibers passing from one side to the other of the nerve cord called commissures. The complete system bears some likeness to a rope ladder. In some animals the bilateral ganglia are fused into a single large ganglion per segment. This characteristic is found mostly in the insects." xsd:string [Term] id: UBERON:0000935 name: anterior commissure namespace: uberon def: "A bundle of myelinated nerve fibers passing transversely through the lamina terminalis and connecting symmetrical parts of the two cerebral hemispheres; it consists of a smaller anterior part (pars anterior commissurae anterioris) and a larger posterior part (pars posterior commissurae anterioris)." [BTO:0002169] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "AC" RELATED OMO:0003000 [NLX:144088] synonym: "anterior cerebral commissure" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "anterior commissural nucleus" RELATED [BAMS:AC] synonym: "commissura anterior" RELATED OMO:0003011 [Wikipedia:Anterior_commissure] synonym: "commissura anterior cerebri" EXACT OMO:0003011 [NeuroNames:205] synonym: "commissura rostral" RELATED [] synonym: "commissura rostralis" EXACT [] synonym: "paleocortical commissure" RELATED [NeuroNames:205] synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure] synonym: "rostral commissure" RELATED [NeuroNames:205] xref: BAMS:AC xref: BAMS:Ac xref: BAMS:ac xref: BAMS:AG xref: BIRNLEX:1557 xref: BM:Tel-AC xref: BTO:0002169 xref: DHBA:10559 xref: DMBA:17751 xref: EMAPA:19038 xref: FMA:61961 xref: HBA:9221 xref: MA:0002722 xref: NCIT:C32086 xref: neuronames:205 xref: NLX:144088 xref: SCTID:279313001 xref: SCTID:369119009 xref: TAO:0001108 xref: UMLS:C0152335 {source="BIRNLEX:1557", source="ncithesaurus:Anterior_Commissure"} xref: VHOG:0001558 xref: Wikipedia:Anterior_commissure xref: ZFA:0001108 is_a: UBERON:0002473 {source="FMA", source="MA"} ! intercerebral commissure is_a: UBERON:0005341 {source="MP"} ! ventral commissure property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "In all vertebrates the thin structure that connects the two halves of the telencephalon shows a ridge-like thickening at the basal side known as the anterior commissure.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001558", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20432.x", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000936 name: posterior commissure namespace: uberon def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP]. Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [Wikipedia:Posterior_commissure, ZFA:0000320] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caudal commissure" EXACT [FMA:62072, ZFA:0000320] synonym: "commissura epithalami" RELATED OMO:0003011 [NeuroNames:484] synonym: "commissura epithalamica" RELATED OMO:0003011 [NeuroNames:484] synonym: "commissura posterior" RELATED OMO:0003011 [Wikipedia:Posterior_commissure] synonym: "epithalamic commissure" EXACT [FMA:62072] synonym: "posterior commissure (Lieutaud)" RELATED [NeuroNames:484] xref: BAMS:PC xref: BAMS:pc xref: BIRNLEX:1026 xref: BM:MB-Tec-PC xref: DHBA:10567 xref: DMBA:17787 xref: EMAPA:35695 xref: FMA:62072 xref: HBA:9229 xref: MA:0002743 xref: MBA:158 xref: NCIT:C33356 xref: neuronames:484 {source="BIRNLEX:1026"} xref: TAO:0000320 xref: UMLS:C0152327 {source="BIRNLEX:1026", source="ncithesaurus:Posterior_Commissure"} xref: Wikipedia:Posterior_commissure xref: ZFA:0000320 is_a: UBERON:0011590 ! commissure of diencephalon relationship: part_of UBERON:0003931 {source="FMA"} ! diencephalic white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI property_value: IAO:0000116 "add connects relationships and check these outside mammalia" xsd:string property_value: UBPROP:0000012 "part_of brainstem in MA; midbrain tectum in NIF" xsd:string {external_ontology="MA"} [Term] id: UBERON:0000941 name: cranial nerve II namespace: uberon def: "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, ISBN:0471888893] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "02 optic nerve" EXACT [AAO:0010345] synonym: "2n" BROAD OMO:0003000 [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-II" RELATED [ZFA:0000435] synonym: "cranial II" EXACT [] synonym: "nerve II" RELATED [NeuroNames:289] synonym: "nervus opticus" EXACT OMO:0003011 [] synonym: "nervus opticus [II]" EXACT OMO:0003011 [FMA:50863, FMA:TA] synonym: "optic" RELATED [TAO:0000435] synonym: "optic II" EXACT [EHDAA2:0001313] synonym: "optic II nerve" EXACT [EHDAA2:0001313] synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435] synonym: "optic nerve [II]" EXACT [] synonym: "second cranial nerve" EXACT [] xref: AAO:0010345 xref: BAMS:2n xref: BAMS:IIn xref: BAMS:nII xref: BIRNLEX:1640 xref: CALOHA:TS-0713 xref: DHBA:15544 xref: EFO:0004258 xref: EHDAA2:0001313 xref: EHDAA:6788 xref: EMAPA:17575 xref: FMA:50863 xref: GAID:831 xref: HBA:9307 xref: MA:0001097 xref: MBA:848 xref: MESH:D009900 xref: NCIT:C12761 xref: neuronames:289 {source="BIRNLEX:1640"} xref: SCTID:180938001 xref: TAO:0000435 xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve", source="BIRNLEX:1640"} xref: VHOG:0000543 xref: Wikipedia:Optic_nerve xref: XAO:0000188 xref: ZFA:0000435 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle relationship: part_of UBERON:0001017 ! central nervous system property_value: IAO:0000116 "Do not classify under 'cranial nerve', as this is not a true nerve - should be classified as evaginated sensory afferent[ISBN:0471888893]" xsd:string property_value: UBPROP:0000001 "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000435", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010345", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup (reference 1); The (optic) stalk persists as the optic nerve (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000543", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429, http://medical-dictionary.thefreedictionary.com/optic+stalk", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "(relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon" xsd:string {external_ontology="MA"} [Term] id: UBERON:0000942 name: frontal nerve (branch of ophthalmic) namespace: uberon def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "frontal nerve" EXACT [FMA:52638] synonym: "nervus frontalis" RELATED OMO:0003011 [Wikipedia:Frontal_nerve] xref: FMA:52638 xref: NCIT:C32638 xref: SCTID:280219004 xref: UMLS:C0228712 {source="ncithesaurus:Frontal_Nerve"} xref: Wikipedia:Frontal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000348 ! ophthalmic nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000955 name: brain namespace: uberon def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Brain] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: major_organ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "encephalon" RELATED [BTO:0000142] synonym: "suprasegmental levels of nervous system" RELATED [NeuroNames:21] synonym: "suprasegmental structures" RELATED [NeuroNames:21] synonym: "synganglion" RELATED [] synonym: "the brain" RELATED [NeuroNames:21] xref: AAO:0010478 xref: ABA:Brain xref: BAMS:Br xref: BAMS:Brain xref: BILA:0000135 xref: BIRNLEX:796 xref: BTO:0000142 xref: CALOHA:TS-0095 xref: DHBA:10155 xref: EFO:0000302 xref: EHDAA2:0000183 xref: EHDAA:2641 xref: EHDAA:6485 xref: EMAPA:16894 xref: EV:0100164 xref: FBbt:00005095 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:50801 xref: GAID:571 xref: galen:Brain xref: HBA:4005 xref: MA:0000168 xref: MAT:0000098 xref: MBA:8 xref: MBA:997 xref: MESH:D001921 xref: MIAA:0000098 xref: NCIT:C12439 xref: neuronames:21 {source="BIRNLEX:796"} xref: PBA:3999 xref: SCTID:258335003 xref: TAO:0000008 xref: UMLS:C0006104 {source="ncithesaurus:Brain", source="BIRNLEX:796"} xref: UMLS:C1269537 {source="BIRNLEX:796"} xref: VHOG:0000157 xref: Wikipedia:Brain xref: XAO:0000010 xref: ZFA:0000008 relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: IAO:0000116 "requires review for applicability to invertebrate structures, e.g. synganglion" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000008", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010478", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: UBPROP:0000003 "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000157", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000956 name: cerebral cortex namespace: uberon def: "The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex." [BIRNLEX:1494] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brain cortex" RELATED [BTO:0000233] synonym: "cortex cerebralis" RELATED OMO:0003011 [NeuroNames:39] synonym: "cortex cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_cortex] synonym: "cortex of cerebral hemisphere" EXACT [BTO:0000233, FMA:61830] synonym: "cortical plate (areas)" RELATED [NeuroNames:39] synonym: "cortical plate (CTXpl)" RELATED [NeuroNames:39] synonym: "pallium of the brain" RELATED [BTO:0000233] xref: BAMS:C xref: BAMS:Cerebral_cortex xref: BAMS:CTX xref: BAMS:Cx xref: BIRNLEX:1494 xref: BM:Tel-Cx xref: BTO:0000233 xref: CALOHA:TS-0091 xref: DHBA:10159 xref: EFO:0000328 xref: EHDAA2:0000234 xref: EHDAA:5464 xref: EMAPA:17544 xref: EV:0100166 xref: FMA:61830 xref: GAID:629 xref: HBA:4008 xref: MA:0000185 xref: MAT:0000108 xref: MBA:688 xref: MESH:D002540 xref: MIAA:0000108 xref: NCIT:C12443 xref: neuronames:39 {source="BIRNLEX:1494"} xref: PBA:128011354 xref: SCTID:362880003 xref: UMLS:C0007776 {source="ncithesaurus:Cortex", source="BIRNLEX:1494"} xref: VHOG:0000722 xref: Wikipedia:Cerebral_cortex is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer relationship: part_of UBERON:0000203 {source="GO", source="ISBN:0471888893"} ! pallium relationship: part_of UBERON:0005401 {source="FMA", source="MA"} ! cerebral hemisphere gray matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg" xsd:anyURI property_value: IAO:0000232 "We follow NIFSTD in defining cerebral cortex and including both neocortex and hippocampal formation (DG+hippocampus)." xsd:string property_value: RO:0002175 NCBITaxon:117569 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2-4 mm (0.08-0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted][Wikipedia:Cerebral_cortex]." xsd:string {source="Wikipedia:Cerebral_cortex"} property_value: UBPROP:0000003 "Migration of neurons from the basal or striatal portions of the anterior part of the neural tube occurs to varying degrees in different vertebrate classes, but a true cerebral cortex is generally acknowledged to have made its first appearance in reptiles. The definition can be unambiguous, since 'cortex' simply implies the existence of a surface neuronal layer with an overlying 'zonal lamina' or 'molecular' layer containing dendrites and axons, which is separated from the underlying basal 'matrix' by white matter. Although reptilian cerebral cortex does indeed fulfill these conditions in certain locations, the separation from striatal structures is often indistinct, so that it may even be argued that some primitive dipnoans possess a pallium or cortex. Nevertheless, an extensive laminated layer separated by underlying white matter is well represented only in reptiles and mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000722", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20437.x Kruger L, Experimental analyses of the reptilian nervous system. Annals of the New York Academy of Sciences (1969)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "hagfishes have independently evolved a highly laminated cerebral cortex, comparable in many ways to the cerebral cortex of mammals [http://icb.oxfordjournals.org/content/42/4/743]" xsd:string [Term] id: UBERON:0000959 name: optic chiasma namespace: uberon def: "A decussation of the diencephalon where the fibers of the optic nerve cross." [http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0009770, Wikipedia:Optic_chiasm] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chiasma" RELATED OMO:0003011 [NeuroNames:459] synonym: "chiasma nervorum opticorum" RELATED OMO:0003011 [NeuroNames:459] synonym: "chiasma opticum" EXACT OMO:0003011 [Wikipedia:Optic_chiasm] synonym: "decussation of optic nerve fibers" EXACT [FMA:62045] synonym: "optic chiasm" EXACT [Wikipedia:Optic_chiasm] synonym: "optic chiasm (Rufus of Ephesus)" RELATED [NeuroNames:459] xref: AAO:0010622 xref: BAMS:DC xref: BAMS:OC xref: BAMS:och xref: BAMS:ox xref: BIRNLEX:1416 xref: BM:Tel-OCX xref: DHBA:10644 xref: DMBA:17783 xref: EHDAA2:0001302 xref: EHDAA:10227 xref: EMAPA:17603 xref: FMA:62045 xref: GAID:832 xref: HBA:9310 xref: MA:0001098 xref: MBA:117 xref: MESH:D009897 xref: NCIT:C90609 xref: neuronames:459 {source="BIRNLEX:1416"} xref: SCTID:244453006 xref: TAO:0000556 xref: UMLS:C0029126 {source="BIRNLEX:1416", source="ncithesaurus:Optic_Chiasm"} xref: VHOG:0000190 xref: Wikipedia:Optic_chiasm xref: XAO:0004071 xref: ZFA:0000556 is_a: UBERON:0007418 {source="cjm"} ! neural decussation is_a: UBERON:0007425 ! decussation of diencephalon relationship: part_of UBERON:0001894 ! diencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/1543%2CVisalius%27OpticChiasma.jpg" xsd:anyURI property_value: UBPROP:0000001 "The point at which fibers of the optic nerves cross.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010622", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000003 "The chiasm has been studied in great detail in some animals, while in others relatively little or nothing is known. Although there are some gross architectural features that are conserved within some animals, such as birds and fish, the general picture is one of diversity. This review will attempt to consider the key features of such diversity of chiasmatic organisation in vertebrates and the mechanisms that sculpt them from the limited literature that is available. However, as so much research has been undertaken on the structure and development of the chiasm in laboratory animals, any review must consider the information that has been gleaned from them and hope that future studies will determine whether the features revealed in these animals, and the underlying mechanisms that generate them, have a common vertebrate plan.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000190", ontology="VHOG", source="DOI:10.1016/j.preteyeres.2005.04.005 Jeffery G, Erskine L, Variations in the architecture and development of the vertebrate optic chiasm. Progress in retinal and eye research (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0000961 name: thoracic ganglion namespace: uberon def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [Wikipedia:Thoracic_ganglion] subset: human_reference_atlas subset: uberon_slim synonym: "ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion thoracicum splanchnicum" EXACT OMO:0003011 [FMA:6471, FMA:TA] synonym: "thoracic paravertebral ganglion" EXACT [MA:0001159] synonym: "thoracic splanchnic ganglion" EXACT [] synonym: "thoracic sympathetic ganglion" EXACT [] synonym: "thorax ganglion" EXACT [OBOL:automatic] xref: BTO:0001831 xref: EHDAA:4664 xref: EMAPA:17158 xref: FMA:6471 xref: MA:0001159 xref: NCIT:C52829 xref: RETIRED_EHDAA2:0002012 xref: SCTID:181102004 xref: UMLS:C0229010 {source="ncithesaurus:Thoracic_Ganglion"} xref: VHOG:0000515 xref: Wikipedia:Thoracic_ganglion is_a: UBERON:0001807 ! paravertebral ganglion relationship: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray849.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000962 name: nerve of cervical vertebra namespace: uberon def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerves] comment: Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] subset: human_reference_atlas subset: uberon_slim synonym: "cervical nerve" EXACT [FMA:5859] synonym: "cervical nerve tree" EXACT [] synonym: "cervical spinal nerve" EXACT [] synonym: "nervus cervicalis" EXACT OMO:0003011 [FMA:5859, FMA:TA] xref: BAMS:cern xref: FMA:5859 xref: NCIT:C32299 xref: neuronames:2351 xref: NLXANAT:20090207 xref: SCTID:360497008 xref: UMLS:C0228815 {source="ncithesaurus:Cervical_Nerve"} xref: Wikipedia:Cervical_nerves is_a: UBERON:0001780 ! spinal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000963 name: head sensillum namespace: uberon xref: FBbt:00004114 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0000966 name: retina namespace: uberon def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator] comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "inner layer of eyeball" EXACT [] synonym: "Netzhaut" RELATED [BTO:0001175] synonym: "retina of camera-type eye" EXACT [GO:0060041] synonym: "retinas" RELATED OMO:0003004 [ZFA:0000152] synonym: "tunica interna of eyeball" EXACT [] xref: AAO:0010352 xref: BAMS:R xref: BIRNLEX:1153 xref: BTO:0001175 xref: CALOHA:TS-0865 xref: EFO:0000832 xref: EHDAA2:0001627 xref: EHDAA:4757 xref: EMAPA:17168 xref: EV:0100348 xref: FMA:58301 xref: GAID:755 xref: MA:0000276 xref: MAT:0000142 xref: MBA:304325711 xref: MESH:D012160 xref: MIAA:0000142 xref: NCIT:C12343 xref: neuronames:1862 xref: NIFSTD_RETIRED:birnlex_1156 xref: SCTID:181171005 xref: TAO:0000152 xref: UMLS:C0035298 {source="BIRNLEX:1153", source="ncithesaurus:Retina"} xref: UMLS:C1278894 {source="BIRNLEX:1153"} xref: VHOG:0000229 xref: Wikipedia:Retina xref: XAO:0000009 xref: ZFA:0000152 is_a: UBERON:0005388 ! photoreceptor array property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:6656 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000152", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000229", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "retinal" xsd:string [Term] id: UBERON:0000971 name: ommatidium namespace: uberon def: "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells." [PMID:21062451] subset: uberon_slim synonym: "omatidia" RELATED OMO:0003004 [] synonym: "omatidium" EXACT [] xref: BTO:0001922 xref: FBbt:00004510 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000666 xref: MAT:0000143 xref: MIAA:0000143 xref: Wikipedia:Ommatidium is_a: UBERON:0002536 ! arthropod sensillum property_value: UBPROP:0000007 "ommatidial" xsd:string [Term] id: UBERON:0000988 name: pons namespace: uberon def: "The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum." [VHOG:0001176] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "pons cerebri" RELATED OMO:0003011 [NeuroNames:547] synonym: "pons of Varolius" EXACT [] synonym: "pons Varolii" EXACT [ncithesaurus:Pons_Varolii] xref: BAMS:PONS xref: BAMS:Pons xref: BIRNLEX:733 xref: BM:Pons xref: BTO:0001101 xref: CALOHA:TS-0813 xref: DHBA:10661 xref: EFO:0001394 xref: EHDAA2:0004394 xref: EMAPA:17563 xref: EV:0100253 xref: FMA:67943 xref: GAID:578 xref: HBA:9131 xref: MA:0000204 xref: MAT:0000115 xref: MBA:771 xref: MESH:D011149 xref: MIAA:0000115 xref: NCIT:C12511 xref: neuronames:547 {source="BIRNLEX:733"} xref: SCTID:279103004 xref: UMLS:C0032639 {source="BIRNLEX:733", source="ncithesaurus:Pons_Varolii"} xref: UMLS:C1280999 {source="BIRNLEX:733"} xref: VHOG:0001176 xref: Wikipedia:Pons is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001895 {source="neuronames"} ! metencephalon relationship: part_of UBERON:0002298 ! brainstem property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png" xsd:anyURI property_value: IAO:0000116 "The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved" xsd:string property_value: RO:0002174 NCBITaxon:7955 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001176", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pons"} property_value: UBPROP:0000003 "During the embryonic development of birds and mammals, neuroblasts migrate from the cerebellum into the ventral part of the rhombencephalon and differentiate into pontine and other nuclei, which relay information from between the cerebrum and cerebellum, and a conspicuous band of transverse fibers. This region is known as the pons. A pons does not differentiate in reptiles and anamniotes (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001176", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.474", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001016 name: nervous system namespace: uberon def: "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]." [BIRNLEX:844, ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nerve net" NARROW [Wikipedia:Nerve_net] synonym: "neurological system" EXACT [GO:0050877] synonym: "systema nervosum" RELATED OMO:0003011 [Wikipedia:Nervous_system] xref: AAO:0000324 xref: BILA:0000079 xref: BIRNLEX:844 xref: BTO:0001484 xref: CALOHA:TS-1313 xref: EFO:0000802 xref: EHDAA2:0001246 xref: EHDAA:826 xref: EMAPA:16469 xref: EV:0100162 xref: FBbt:00005093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7157 xref: GAID:466 xref: MA:0000016 xref: MAT:0000026 xref: MESH:D009420 xref: MIAA:0000026 xref: NCIT:C12755 xref: neuronames:3236 xref: SCTID:278196006 xref: TAO:0000396 xref: UMLS:C0027763 {source="ncithesaurus:Nervous_System"} xref: VHOG:0000402 xref: WBbt:0005735 xref: Wikipedia:Nervous_system xref: XAO:0000177 xref: ZFA:0000396 is_a: UBERON:0000467 ! anatomical system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:6040 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000396", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000324", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "Nervous systems evolved in the ancestor of Eumetazoa.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000402", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.117", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "nervous" xsd:string property_value: UBPROP:0000007 "neural" xsd:string [Term] id: UBERON:0001017 name: central nervous system namespace: uberon def: "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord." [GO:0021551, http://www.frontiersinzoology.com/content/7/1/29, https://sourceforge.net/p/geneontology/ontology-requests/11422/] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebrospinal axis" NARROW [FMA:55675] synonym: "CNS" EXACT OMO:0003000 [] synonym: "neuraxis" RELATED [FMA:55675] synonym: "systema nervosum centrale" EXACT OMO:0003011 [FMA:55675, FMA:TA] xref: AAO:0000090 xref: BAMS:CNS xref: BILA:0000080 xref: BIRNLEX:1099 xref: BTO:0000227 xref: CALOHA:TS-0150 xref: EFO:0000908 xref: EHDAA2:0000225 xref: EHDAA:828 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 xref: FBbt:00005094 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:55675 xref: GAID:570 xref: MA:0000167 xref: MAT:0000457 xref: MESH:D002490 xref: NCIT:C12438 xref: neuronames:854 xref: SCTID:278199004 xref: TAO:0000012 xref: UMLS:C0927232 {source="ncithesaurus:Central_Nervous_System", source="BIRNLEX:1099"} xref: VHOG:0000293 xref: Wikipedia:Central_nervous_system xref: XAO:0000215 xref: ZFA:0000012 relationship: part_of UBERON:0001016 ! nervous system property_value: RO:0002161 NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Part of the nervous system which includes the brain and spinal cord.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000090", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The brain and spinal cord. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000012", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The central nervous system (CNS) is the part of the nervous system which includes the brain, spinal cord, and nerve cell layer of the retina (CUMBO)." xsd:string {source="BIRNLEX:1099"} property_value: UBPROP:0000003 "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2); Taken together, our data make a very strong case that the complex molecular mediolateral architecture of the developing trunk CNS (central nervous system), as shared between Platynereis and vertebrates, was already present in their last common ancestor, Urbilateria. The concept of bilaterian nervous system centralization implies that neuron types concentrate on one side of the trunk, as is the case in vertebrates and many invertebrates including Platynereis, where they segregate and become spatially organized (as opposed to a diffuse nerve net). Our data reveal that a large part of the spatial organization of the annelid and vertebrate CNS was already present in their last common ancestor, which implies that Urbilateria had already possessed a CNS (reference 3).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000293", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28 (reference 1), ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165 (reference 2), DOI:10.1016/j.cell.2007.02.040 Denes AS, Jekely G, Steinmetz PRH, Raible F, Snyman H, Prud'homme B, Ferrier DEK, Balavoine G and Arendt D, Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in Bilateria. Cell (2007) (reference 3)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001018 name: axon tract namespace: uberon def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, https://github.com/obophenotype/uberon/issues/286] comment: WP says this is the analog of peripheral nerves in CNS. subset: cumbo subset: pheno_slim synonym: "axonal tract" EXACT [] synonym: "nerve tract" NARROW [BIRNLEX:1649] synonym: "nerve tract" RELATED [] synonym: "neuraxis tract" EXACT [FMA:83847] synonym: "tract" RELATED [] synonym: "tract of neuraxis" EXACT [FMA:83847] xref: BIRNLEX:1649 xref: EV:0100304 xref: FBbt:00005100 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:83847 xref: NLX:147822 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001017 ! central nervous system property_value: UBPROP:0000001 "White matter structure of CNS that contains axons that arise predominantly in one central nervous system part and terminate in another. Tracts are generally named by their region or origin followed by their region of primary termination, e.g., mammillothalamic tract contains axons that arise from neurons in the mammillary bodies and terminate in the thalamus. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} [Term] id: UBERON:0001019 name: nerve fasciculus namespace: uberon def: "A slender neuron projection bundle[FBbt]; A bundle of anatomical fibers, as of muscle or nerve (American Heritage Dictionary 4th ed)." [BIRNLEX:872, FBbt:00005101] comment: EDITOR_NOTE note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle' subset: uberon_slim synonym: "fascicle" BROAD [FBbt:00005101] synonym: "fasciculus" EXACT OMO:0003011 [] synonym: "nerve bundle" EXACT [FMA:12235] synonym: "nerve fasciculus" EXACT [FMA:12235] synonym: "nerve fiber tract" RELATED [BTO:0002191] synonym: "neural fasciculus" EXACT [FMA:12235] xref: BIRNLEX:872 xref: BTO:0002191 xref: EMAPA:36605 xref: FMA:12235 xref: NCIT:C32586 xref: TGMA:0000088 xref: UMLS:C1185741 {source="ncithesaurus:Fascicle"} xref: Wikipedia:Nervous_system_fascicle is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0001020 name: nervous system commissure namespace: uberon def: "Axon tract that crosses the midline of the central nervous system[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]." [https://github.com/obophenotype/uberon/issues/300, https://github.com/obophenotype/uberon/issues/325, NLXANAT:20090513] comment: *not* the same as FMA:76741 Commissure subset: cumbo subset: uberon_slim synonym: "commissure" BROAD [] synonym: "commissure of neuraxis" EXACT [FMA:83906] synonym: "neuraxis commissure" EXACT [FMA:83906] synonym: "white matter commissure" NARROW [CUMBO:CUMBO] xref: FMA:83906 xref: NCIT:C32349 xref: NLX:110 xref: NLXANAT:20090513 xref: TADS:0000201 xref: UMLS:C1185742 {source="ncithesaurus:Commissure"} xref: Wikipedia:Commissure is_a: UBERON:0001018 ! axon tract property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: UBPROP:0000001 "White matter fiber bundle that crosses the midline of the brain or spinal cord, that connects similar structures on both sides. (CUMBO; Heimer, L. The Human Brain, 2nd ed., 1995, pg 6)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: UBPROP:0000007 "commissural" xsd:string [Term] id: UBERON:0001021 name: nerve namespace: uberon def: "An enclosed, cable-like bundle of axons in the peripheral nervous system originating in a nerve root in the central nervous system (or a condensed nervous structure) connecting with peripheral structures." [FBbt:00005105, http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nerves" EXACT OMO:0003004 [TAO:0007009] synonym: "neural subtree" RELATED [FMA:65132] synonym: "peripheral nerve" EXACT [http://orcid.org/0000-0002-6601-2165] xref: AAO:0011070 xref: AEO:0000137 xref: BAMS:n xref: BIRNLEX:1615 xref: BSA:0000098 xref: BTO:0000925 xref: BTO:0001027 xref: CALOHA:TS-0772 xref: EHDAA2:0003137 xref: EHDAA:2851 xref: EHDAA:3776 xref: EHDAA:4657 xref: EMAPA:32808 xref: EMAPA:32815 xref: EV:0100371 xref: FBbt:00005105 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:65132 xref: FMA:65239 xref: GAID:747 xref: GAID:758 xref: galen:Nerve xref: MA:0000217 xref: MA:0000228 xref: MESH:D010525 xref: NCIT:C12466 xref: NCIT:C12768 xref: NLX:147826 xref: SCTID:244457007 xref: SCTID:256864008 xref: TAO:0007009 xref: UMLS:C0027740 {source="ncithesaurus:Nerve"} xref: UMLS:C0031119 {source="ncithesaurus:Peripheral_Nerve"} xref: VHOG:0000901 xref: Wikipedia:Nervous_system xref: XAO:0000204 xref: XAO:0003047 xref: ZFA:0007009 is_a: UBERON:0000122 {source="FBbt"} ! neuron projection bundle relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0007009", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000007 "nervous" xsd:string [Term] id: UBERON:0001027 name: sensory nerve namespace: uberon def: "A nerve that transmits from sensory receptors on the surface of the body to the central nervous system." [UBERON:cjm, Wikipedia:Sensory_nerve] subset: pheno_slim subset: uberon_slim synonym: "afferent nerve" RELATED [] synonym: "nervus sensorius" EXACT OMO:0003011 [Wikipedia:Sensory_nerve] xref: AEO:0000201 xref: EHDAA2:0003200 xref: FBbt:00005136 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5868 xref: Wikipedia:Sensory_nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001031 name: sheath of Schwann namespace: uberon def: "The outermost nucleated cytoplasmic layer of Schwann cells that surrounds the axon of the neuron. It forms the outermost layer of the nerve fiber in the peripheral nervous system. The neurolemma is underlain by the basal lamina (referred to as the medullary sheath in the included illustrations. In CNS, axons are myelinated by oligodendrocytes, thus lack neurolemma." [Wikipedia:Neurolemma] subset: uberon_slim synonym: "endoneural membrane" RELATED [BTO:0003048] synonym: "neurilemma" EXACT [FMA:62976] synonym: "neurolemma" EXACT [] synonym: "Schwann's membrane" RELATED [BTO:0003048] synonym: "sheath of Schwann" EXACT [] xref: BTO:0003048 xref: FMA:62976 xref: GAID:730 xref: MESH:D009441 xref: NCIT:C33544 xref: UMLS:C0027807 {source="ncithesaurus:Sheath_of_Schwann"} xref: Wikipedia:Neurilemma relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/34/Gray631.png" xsd:anyURI property_value: UBPROP:0000012 "FMA def is 'Neural tissue which consists of Schwann cells' which does not fit, but we still use 'neural tissue' here. WP def specifically states Schwann cells, which would restrict it to PNS" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001047 name: neural glomerulus namespace: uberon def: "A large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets." [DOI:10.1016/B978-0-12-374245-2.00007-3, ILX:0728797] subset: uberon_slim synonym: "glomerulus" BROAD [FBbt:00005386] xref: FBbt:00005386 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: ILX:0728797 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002606 ! neuropil [Term] id: UBERON:0001053 name: arthropod neurohemal organ namespace: uberon def: "A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system." [BTO:0002106] comment: brain areas from which substances enter blood for example, the neurohypophysis from which oxytocin and vasopressin enter blood. subset: efo_slim subset: organ_slim synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 xref: EFO:0000864 xref: FBbt:00005757 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000212 xref: MIAA:0000212 relationship: part_of UBERON:0001016 {source="BTO"} ! nervous system property_value: UBPROP:0000012 "currently intended for invert structure; alt definitions include: organs in which intimate relationships between axons and terminal blood vessels are established" xsd:string [Term] id: UBERON:0001056 name: corpus cardiacum namespace: uberon def: "One of a pair of neurohemal organs located on the walls of the aorta just behind the brain. The corpora cardiaca release their store of PTTH only after they receive a signal from neurosecretory cells in the brain." [BTO:0000432, http://en.wikipedia.org/wiki/Corpus_cardiacum#Endocrine_system, http://www.cals.ncsu.edu/course/ent425/tutorial/endocrine.html] comment: will be ceded to arthropod anatomy ontology subset: efo_slim synonym: "corpora cardiaca" RELATED OMO:0003004 [BTO:0000432] xref: BTO:0000432 xref: EFO:0000380 xref: FBbt:00005799 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000211 xref: MIAA:0000211 is_a: UBERON:0001053 ! arthropod neurohemal organ [Term] id: UBERON:0001058 name: mushroom body namespace: uberon def: "Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, MESH:A13.641, Wikipedia:Mushroom_body] subset: efo_slim subset: uberon_slim synonym: "corpora pedunculata" RELATED [FBbt:00005801, PMID:21062451] synonym: "mushroom bodies" EXACT OMO:0003004 [] xref: BTO:0002675 xref: EFO:0000925 xref: FBbt:00005801 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1231 xref: MAT:0000336 xref: MESH:D024521 xref: MIAA:0000336 xref: Wikipedia:Mushroom_body relationship: part_of UBERON:0000955 ! brain property_value: RO:0002161 NCBITaxon:6217 property_value: RO:0002175 NCBITaxon:6340 property_value: RO:0002175 NCBITaxon:6656 property_value: UBPROP:0000008 "Also in annelids. 'Comparison to the vertebrate pallium reveals that the annelid mushroom bodies develop from similar molecular coordinates within a conserved overall molecular brain topology and that their development involves conserved patterning mechanisms and produces conserved neuron types that existed already in the proto- stome-deuterostome ancestors. These data indicate deep homology of pallium and mushroom bodies and date back the origin of higher brain centers to prebilaterian times'" xsd:string {source="PMID:20813265"} [Term] id: UBERON:0001059 name: pars intercerebralis namespace: uberon def: "A neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]." [http://en.wiktionary.org/wiki/pars_intercerebralis, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: will be ceded to arthropod anatomy ontology subset: efo_slim subset: uberon_slim xref: EFO:0000926 xref: FBbt:00005802 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000337 xref: MIAA:0000337 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000955 {source="FBbt"} ! brain [Term] id: UBERON:0001062 name: anatomical entity namespace: uberon def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level xref: AAO:0010841 xref: AEO:0000000 xref: BFO:0000004 xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 xref: FBbt:10000000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:62955 xref: HAO:0000000 xref: MA:0000001 xref: NCIT:C12219 xref: TAO:0100000 xref: TGMA:0001822 xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"} xref: WBbt:0000100 xref: XAO:0000000 xref: ZFA:0100000 is_a: BFO:0000004 ! independent continuant property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0001063 name: flocculus namespace: uberon def: "The small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule that receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance." [http://orcid.org/0000-0002-6601-2165, ISBN:0838580343, MGI:csmith, MP:0010006, Wikipedia:Flocculus_(cerebellar)] subset: pheno_slim subset: uberon_slim synonym: "flocculus of cerebellum" EXACT [FMA:83881] synonym: "H X" RELATED [FMA:83881] synonym: "hemispheric lobule X" RELATED INCONSISTENT [NLXANAT:20081213] synonym: "lobule H X of Larsell" RELATED [FMA:83881] synonym: "lobule X" RELATED [FMA:83881] synonym: "lobule X of hemisphere of cerebellum" RELATED [FMA:83881] synonym: "neuraxis flocculus" EXACT [FMA:83881] xref: BAMS:FL xref: BAMS:Fl xref: BIRNLEX:1329 xref: DMBA:16946 xref: EMAPA:35346 xref: FMA:83881 xref: HBA:12945 xref: MA:0000992 xref: MBA:1049 xref: neuronames:680 xref: SCTID:279368002 xref: SCTID:30711003 xref: Wikipedia:Flocculus_(cerebellar) is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion relationship: part_of UBERON:0002129 ! cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere relationship: part_of UBERON:0003012 {source="FMA-abduced-lr"} ! flocculonodular lobe property_value: RO:0002171 UBERON:0005347 {source="ABA"} property_value: RO:0002171 UBERON:0005348 {source="ABA"} property_value: RO:0002171 UBERON:0005349 {source="ABA"} property_value: RO:0002171 UBERON:0005350 {source="ABA"} property_value: RO:0002171 UBERON:0005351 {source="ABA"} property_value: UBPROP:0000008 "enlarged in pterosaurs" xsd:string {source="PMID:14586467"} property_value: UBPROP:0000009 "At its base, the flocculus receives input from the middle ears vestibular system and regulates balance. Many floccular projections descend to the spinal cord and connect to the motor nuclei involved in control of eye movement." xsd:string {source="WP"} property_value: UBPROP:0000012 "flocculus is an exact label for two distinct classes in NIF." xsd:string {external_ontology="NIF"} [Term] id: UBERON:0001148 name: median nerve namespace: uberon def: "A nerve of the arm that originates from the brachial plexus and is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1." [Wikipedia:Median_nerve] comment: The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP] subset: human_reference_atlas subset: uberon_slim synonym: "nervus medianus" RELATED OMO:0003011 [Wikipedia:Median_nerve] xref: EHDAA2:0001086 xref: EHDAA:5648 xref: EMAPA:17277 xref: FMA:14385 xref: GAID:843 xref: MA:0001168 xref: MESH:D008475 xref: NCIT:C52815 xref: SCTID:181010001 xref: UMLS:C0025058 {source="ncithesaurus:Median_Nerve"} xref: Wikipedia:Median_nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001814 ! brachial nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001267 name: femoral nerve namespace: uberon def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve] subset: uberon_slim synonym: "anterior crural nerve" EXACT [] synonym: "nervus femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_nerve] xref: EHDAA2:0000507 xref: EHDAA:5655 xref: EMAPA:35343 xref: FMA:16486 xref: GAID:850 xref: MA:0001167 xref: MESH:D005267 xref: NCIT:C52816 xref: SCTID:181051004 xref: UMLS:C0015808 {source="ncithesaurus:Femoral_Nerve"} xref: VHOG:0001411 xref: Wikipedia:Femoral_nerve is_a: UBERON:0003431 ! leg nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png" xsd:anyURI [Term] id: UBERON:0001322 name: sciatic nerve namespace: uberon def: "A large nerve that supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. It begins in the lower back and runs through the buttock and down the lower limb." [Wikipedia:Sciatic_nerve] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ischiadic nerve" RELATED [Wikipedia:Sciatic_nerve] synonym: "ischiatic nerve" RELATED [Wikipedia:Sciatic_nerve] synonym: "nervus ischiadicus" RELATED OMO:0003011 [BTO:0001221, Wikipedia:Sciatic_nerve] synonym: "nervus sciaticus" RELATED [BTO:0001221] xref: BIRNLEX:1133 xref: BTO:0001221 xref: CALOHA:TS-0899 xref: EFO:0001417 xref: EHDAA2:0001779 xref: EHDAA:5659 xref: EMAPA:18577 xref: FMA:19034 xref: GAID:852 xref: MA:0001172 xref: MESH:D012584 xref: NCIT:C52810 xref: SCTID:181050003 xref: UMLS:C0036394 {source="BIRNLEX:1133", source="ncithesaurus:Sciatic_Nerve"} xref: VHOG:0000894 xref: Wikipedia:Sciatic_nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "mouse sciatic nerve origins predominantly from the third lumbar (L3) and L4 spinal nerves, unlike the L4 and L5 in rats - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/" xsd:string [Term] id: UBERON:0001323 name: tibial nerve namespace: uberon def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [Wikipedia:Tibial_nerve] subset: uberon_slim synonym: "medial popliteal nerve" EXACT [] synonym: "n. tibialis" RELATED OMO:0003011 [Wikipedia:Tibial_nerve] xref: EMAPA:36512 xref: FMA:19035 xref: GAID:854 xref: MA:0001173 xref: MESH:D013979 xref: NCIT:C52809 xref: SCTID:181078002 xref: UMLS:C0040186 {source="ncithesaurus:Tibial_Nerve"} xref: Wikipedia:Tibial_nerve is_a: UBERON:0003431 ! leg nerve relationship: part_of UBERON:0001322 ! sciatic nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png" xsd:anyURI [Term] id: UBERON:0001324 name: common fibular nerve namespace: uberon def: "A nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]." [MP:0011211] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "common peroneal nerve" EXACT [] synonym: "extrernal peroneal nerve" EXACT [MP:0011211] synonym: "lateral popliteal nerve" EXACT [MP:0011211] synonym: "n. fibularis communis" RELATED OMO:0003011 [Wikipedia:Common_fibular_nerve] synonym: "n. peroneus communis" RELATED OMO:0003011 [Wikipedia:Common_fibular_nerve] synonym: "nervus fibularis communis" RELATED OMO:0003011 [] synonym: "nervus peroneus communis" EXACT OMO:0003011 [FMA:19039, FMA:TA] xref: EFO:0003062 xref: FMA:19039 xref: GAID:853 xref: MA:0001169 xref: MESH:D010543 xref: NCIT:C52814 xref: SCTID:181077007 xref: UMLS:C0031173 {source="ncithesaurus:Peroneal_Nerve"} xref: Wikipedia:Common_fibular_nerve is_a: UBERON:0003431 ! leg nerve is_a: UBERON:0035652 ! fibular nerve relationship: part_of UBERON:0001322 ! sciatic nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray832.png" xsd:anyURI property_value: UBPROP:0000010 "derives into deep and superficial branches" xsd:string [Term] id: UBERON:0001384 name: primary motor cortex namespace: uberon def: "The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html." [NLX:143555] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "excitable area" RELATED [BTO:0004348] synonym: "gyrus precentralis" RELATED OMO:0003011 [Wikipedia:Primary_motor_cortex] synonym: "motor area" RELATED [BTO:0004348] synonym: "motor cortex" EXACT [FMA:224854] synonym: "prefrontal gyrus" RELATED [MP:0000798, Wikipedia:Primary_motor_cortex] synonym: "primary motor area" RELATED [BAMS:MOp] synonym: "Rolando's area" RELATED [BTO:0004348] synonym: "somatic motor areas" RELATED [BAMS:MO] synonym: "somatomotor areas" RELATED [BAMS:MO] xref: BAMS:M1 xref: BAMS:MO xref: BAMS:MOp xref: BM:Tel-Cx-M1 xref: BTO:0004348 xref: DHBA:10162 xref: EFO:0002472 xref: EMAPA:35704 xref: FMA:224854 xref: MA:0000907 xref: MBA:985 xref: MESH:D009044 xref: NCIT:C97339 xref: neuronames:1910 xref: NLX:143555 xref: SCTID:11931008 xref: UMLS:C0026607 {source="ncithesaurus:Primary_Motor_Cortex"} xref: Wikipedia:Primary_motor_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001870 {source="MA", source="Wikipedia"} ! frontal cortex relationship: part_of UBERON:0001950 ! neocortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png" xsd:anyURI property_value: IAO:0000116 "TODO - in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 parietal lobe" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "the area of the frontal lobe that is involved with integration of voluntary movements and with speech.[MP]" xsd:string {date_retrieved="2012-08-31", external_class="MP:0000800", ontology="MP", source="MGI:csmith"} property_value: UBPROP:0000001 "The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html" xsd:string {source="NLX:143555"} [Term] id: UBERON:0001393 name: auditory cortex namespace: uberon def: "The part of the brain that is the ultimate target of afferent auditory information." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] subset: pheno_slim subset: uberon_slim synonym: "A1 (primary auditory cortex)" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "anterior transverse temporal area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "auditory area" RELATED [BTO:0004343] synonym: "auditory areas" RELATED [BAMS:AUD] synonym: "auditory cortex" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "BA41" RELATED OMO:0003000 [] synonym: "BA42" RELATED OMO:0003000 [] synonym: "Brodmann area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "Brodmann area 41 & 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "Brodmann area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "posterior transverse temporal area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "primary auditory cortex" RELATED [Wikipedia:Auditory_cortex] synonym: "temporal auditory neocortex" RELATED [GEO:GSE13344] xref: BAMS:Area_1 xref: BAMS:Au1 xref: BAMS:AUD xref: BTO:0004343 xref: EMAPA:35156 xref: FMA:226221 xref: GAID:682 xref: MA:0000942 xref: MBA:247 xref: MESH:D001303 xref: NCIT:C52712 xref: neuronames:1556 xref: UMLS:C0004302 {source="ncithesaurus:Auditory_Cortex"} xref: Wikipedia:Auditory_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001871 {source="MA"} ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Brodmann_41_42.png" xsd:anyURI [Term] id: UBERON:0001492 name: radial nerve namespace: uberon def: "A nerve that supplies the upper limb, including the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin." [Wikipedia:Radial_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "nervus radialis" RELATED OMO:0003011 [Wikipedia:Radial_nerve] xref: EHDAA2:0001584 xref: EHDAA:5650 xref: EMAPA:17278 xref: FMA:37069 xref: GAID:845 xref: MA:0001171 xref: MESH:D011826 xref: NCIT:C52812 xref: SCTID:181011002 xref: UMLS:C0034518 {source="ncithesaurus:Radial_Nerve"} xref: VHOG:0000896 xref: Wikipedia:Radial_nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001814 ! brachial nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray818.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001493 name: axillary nerve namespace: uberon def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [Wikipedia:Axillary_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "auxillery nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "circumflex humeral nerve" EXACT [] synonym: "circumflex nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "nervus axillaris" RELATED OMO:0003011 [Wikipedia:Axillary_nerve] xref: EMAPA:18802 xref: FMA:37072 xref: MA:0001166 xref: NCIT:C52817 xref: SCTID:181009006 xref: UMLS:C0228885 {source="ncithesaurus:Axillary_Nerve"} xref: Wikipedia:Axillary_nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001814 {source="MA"} ! brachial nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001494 name: ulnar nerve namespace: uberon alt_id: UBERON:0005668 def: "A nerve which runs near the ulna bone." [Wikipedia:Ulnar_nerve] subset: human_reference_atlas subset: uberon_slim synonym: "nervus ulnaris" RELATED OMO:0003011 [Wikipedia:Ulnar_nerve] xref: EHDAA2:0002099 xref: EHDAA:5652 xref: EMAPA:17279 xref: FMA:37319 xref: GAID:846 xref: MA:0001174 xref: MESH:D014459 xref: NCIT:C52807 xref: SCTID:181012009 xref: UMLS:C0041602 {source="ncithesaurus:Ulnar_Nerve"} xref: VHOG:0000922 xref: Wikipedia:Ulnar_nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001814 ! brachial nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001579 name: olfactory nerve namespace: uberon def: "Nerve that carries information from the olfactory epithelium to the olfactory bulb[Butler and Hodos]." [ISBN:0471209627, Wikipedia:Olfactory_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "1n" BROAD OMO:0003000 [BIRNLEX:1319, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-I" RELATED [] synonym: "cranial nerve I" RELATED [] synonym: "fila olfactoria" RELATED [BTO:0003648] synonym: "first cranial nerve" EXACT [] synonym: "nerve I" RELATED [NeuroNames:32] synonym: "nerve of smell" RELATED [BTO:0003648] synonym: "nervus olfactorius" RELATED OMO:0003011 [BTO:0003648, Wikipedia:Olfactory_nerve] synonym: "nervus olfactorius [i]" EXACT OMO:0003011 [FMA:46787, FMA:TA] synonym: "olfactoria fila" RELATED [NeuroNames:32] synonym: "olfactory fila" RELATED [BTO:0003648] synonym: "olfactory I" EXACT [EHDAA2:0001293] synonym: "olfactory i nerve" EXACT [] synonym: "olfactory nerve [I]" EXACT [] xref: AAO:0010088 xref: BAMS:1n xref: BAMS:ln xref: BIRNLEX:1319 xref: BTO:0003648 xref: EHDAA2:0001293 xref: EHDAA:6672 xref: EMAPA:17797 xref: FMA:46787 xref: GAID:830 xref: HBA:9300 xref: MA:0001096 xref: MBA:840 xref: MESH:D009832 xref: NCIT:C12759 xref: neuronames:32 {source="BIRNLEX:1319"} xref: SCTID:180937006 xref: TAO:0000249 xref: UMLS:C0028938 {source="ncithesaurus:Olfactory_Nerve", source="BIRNLEX:1319"} xref: UMLS:C1268984 {source="BIRNLEX:1319"} xref: VHOG:0000703 xref: Wikipedia:Olfactory_nerve xref: XAO:0000426 xref: ZFA:0000249 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Nerve that carries information from the olfactory epithelium through the olfactory bulb to the olfactory cortex of the telencephalon.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010088", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000001 "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb[FMA:46787]." xsd:string {source="FMA:46787"} property_value: UBPROP:0000001 "The 1st cranial nerve. The olfactory nerve conveys the sense of smell. It is formed by the axons of OLFACTORY RECEPTOR NEURONS which project from the olfactory epithelium (in the nasal epithelium) to the OLFACTORY BULB[MESH:A08.800.800.120.640]." xsd:string {source="MESH:A08.800.800.120.640"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000703", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "connects to main OB (in taxa where main/accessory distinction is important)" xsd:string [Term] id: UBERON:0001620 name: central retinal artery namespace: uberon def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery] subset: human_reference_atlas subset: uberon_slim synonym: "arteria centralis retinae" RELATED OMO:0003011 [Wikipedia:Central_retinal_artery] synonym: "central artery of retina" EXACT [] synonym: "central artery of the retina" RELATED [Wikipedia:Central_retinal_artery] synonym: "retinal artery" EXACT [] synonym: "Zinn's artery" EXACT [] xref: EMAPA:37113 {source="MA:th"} xref: FMA:49879 xref: GAID:508 xref: MA:0002038 xref: MESH:D012161 xref: NCIT:C52997 xref: SCTID:277771001 xref: UMLS:C0035301 {source="ncithesaurus:Retinal_Artery"} xref: Wikipedia:Central_retinal_artery is_a: UBERON:0003501 ! retina blood vessel relationship: part_of UBERON:0004864 ! vasculature of retina property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001641 name: transverse sinus namespace: uberon def: "One of the dural venous sinuses and drains the superior sagittal sinus the occipital sinus and the straight sinus, and empties into the sigmoid sinus which in turn reaches the jugular bulb." [http://radiopaedia.org/articles/transverse-sinus] subset: human_reference_atlas subset: uberon_slim synonym: "groove for right and left transverse sinuses" RELATED [Wikipedia:Transverse_sinuses] synonym: "lateral sinus" RELATED [FMA:50763] synonym: "sinus transversus" RELATED [Wikipedia:Transverse_sinuses] synonym: "sinus transversus durae matris" EXACT OMO:0003011 [Wikipedia:Transverse_sinuses] synonym: "transverse sinus" RELATED [Wikipedia:Transverse_sinuses] synonym: "transverse sinus vein" RELATED [Wikipedia:Transverse_sinuses] xref: EMAPA:18637 xref: FMA:50763 xref: MA:0001868 xref: ncithesaurus:Transverse_Sinus xref: SCTID:279262004 xref: Wikipedia:Transverse_sinuses is_a: UBERON:0017635 ! paired venous dural sinus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI property_value: IAO:0000116 "TODO - check subclasses" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001642 name: superior sagittal sinus namespace: uberon def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [Wikipedia:Superior_sagittal_sinus] subset: human_reference_atlas subset: uberon_slim synonym: "sinus sagittalis superior" RELATED OMO:0003011 [Wikipedia:Superior_sagittal_sinus] xref: EMAPA:18636 xref: FMA:50767 xref: MA:0001867 xref: MESH:D054063 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12515 xref: SCTID:362075006 xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"} xref: Wikipedia:Superior_sagittal_sinus is_a: UBERON:0015704 ! sagittal sinus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001643 name: oculomotor nerve namespace: uberon def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "3n" BROAD OMO:0003000 [BIRNLEX:1646, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-III" RELATED [] synonym: "cranial nerve III" RELATED [] synonym: "nerve III" RELATED [NeuroNames:488] synonym: "nervus oculomotorius" EXACT OMO:0003011 [Wikipedia:Oculomotor_nerve] synonym: "nervus oculomotorius [III]" EXACT OMO:0003011 [FMA:50864, FMA:TA] synonym: "occulomotor" RELATED [] synonym: "oculomotor III" EXACT [EHDAA2:0001284] synonym: "oculomotor III nerve" EXACT [] synonym: "oculomotor nerve [III]" EXACT [] synonym: "oculomotor nerve or its root" RELATED [BAMS:3n] synonym: "oculomotor nerve tree" EXACT [] synonym: "third cranial nerve" EXACT [] xref: AAO:0010468 xref: BAMS:3n xref: BAMS:IIIn xref: BIRNLEX:1646 xref: BM:MB-IIIN xref: EHDAA2:0001284 xref: EHDAA:3736 xref: EMAPA:17574 xref: FMA:50864 xref: GAID:829 xref: HBA:9316 xref: MA:0001095 xref: MBA:832 xref: MESH:D009802 xref: NCIT:C12758 xref: neuronames:488 {source="BIRNLEX:1646"} xref: SCTID:362456009 xref: TAO:0000405 xref: UMLS:C0028864 {source="BIRNLEX:1646", source="ncithesaurus:Oculomotor_Nerve"} xref: VHOG:0000692 xref: Wikipedia:Oculomotor_nerve xref: XAO:0003090 xref: ZFA:0000405 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Somatic efferent fibers which innervate four eye muscles.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010468", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000692", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001644 name: trochlear nerve namespace: uberon def: "A cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "4n" BROAD OMO:0003000 [BIRNLEX:1654, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-IV" RELATED [] synonym: "cranial nerve IV" EXACT [VHOG:0000705, ZFA:0000600] synonym: "fourth cranial nerve" EXACT [] synonym: "nerve IV" RELATED [NeuroNames:466] synonym: "nervus trochlearis" RELATED OMO:0003011 [Wikipedia:Trochlear_nerve] synonym: "nervus trochlearis [IV]" EXACT OMO:0003011 [FMA:50865, FMA:TA] synonym: "pathetic nerve" RELATED [VHOG:0000705] synonym: "superior oblique nerve" EXACT [] synonym: "trochlear" RELATED [VHOG:0000705] synonym: "trochlear IV nerve" EXACT [MA:0001105] synonym: "trochlear nerve [IV]" EXACT [] synonym: "trochlear nerve or its root" RELATED [BAMS:4n] synonym: "trochlear nerve tree" EXACT [] synonym: "trochlear nerve/root" RELATED [BAMS:4n] xref: AAO:0010469 xref: BAMS:4n xref: BAMS:IVn xref: BAMS:nIV xref: BIRNLEX:1654 xref: BM:IVN xref: EHDAA2:0002090 xref: EMAPA:18218 xref: FMA:50865 xref: GAID:838 xref: HBA:9319 xref: MA:0001105 xref: MBA:911 xref: MESH:D014321 xref: NCIT:C12808 xref: neuronames:466 {source="BIRNLEX:1654"} xref: SCTID:180939009 xref: TAO:0000600 xref: UMLS:C0041159 {source="BIRNLEX:1654", source="ncithesaurus:Trochlear_Nerve"} xref: VHOG:0000705 xref: Wikipedia:Trochlear_nerve xref: XAO:0003091 xref: ZFA:0000600 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/3/33/Trochlear_nerve.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Somatic efferent nerve which supplies a single eye muscle, the m. obliquus superior.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010469", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000705", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "Homologous trochlear nerves are found in all jawed vertebrates" xsd:string property_value: UBPROP:0000011 "The human trochlear nerve is derived from the basal plate of the embryonic midbrain." xsd:string [Term] id: UBERON:0001645 name: trigeminal nerve namespace: uberon def: "Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "5n" BROAD OMO:0003000 [BIRNLEX:869, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-V" RELATED [] synonym: "cranial nerve V" RELATED [] synonym: "fifth cranial nerve" EXACT [] synonym: "nerve V" RELATED [NeuroNames:549] synonym: "nervus trigeminus" EXACT OMO:0003011 [Wikipedia:Trigeminal_nerve] synonym: "nervus trigeminus" RELATED [BTO:0001072] synonym: "nervus trigeminus [v]" EXACT OMO:0003011 [FMA:50866, FMA:TA] synonym: "trigeminal nerve [V]" EXACT [] synonym: "trigeminal nerve tree" EXACT [] synonym: "trigeminal V" EXACT [EHDAA2:0002084] synonym: "trigeminal v nerve" EXACT [] synonym: "trigeminus" RELATED [BTO:0001072] xref: AAO:0010470 xref: BAMS:5n xref: BAMS:nV xref: BAMS:Vn xref: BIRNLEX:869 xref: BM:VN xref: BTO:0001072 xref: EFO:0001402 xref: EHDAA2:0002084 xref: EHDAA:3738 xref: EMAPA:17576 xref: FMA:50866 xref: GAID:726 xref: HBA:9322 xref: MA:0001100 xref: MBA:901 xref: MESH:D014276 xref: MFMO:0000093 xref: NCIT:C12806 xref: neuronames:549 {source="BIRNLEX:869"} xref: SCTID:362459002 xref: TAO:0000697 xref: UMLS:C0040996 {source="ncithesaurus:Trigeminal_Nerve", source="BIRNLEX:869"} xref: VHOG:0000704 xref: Wikipedia:Trigeminal_nerve xref: XAO:0003092 xref: ZFA:0000697 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Nerve consists of motor and sensory components. Ganglion cells of the sensory component form the proximal part of the trigeminal (Gasserian) ganglion. From the ganglion 3 major rami innervate jaws, snout, and buccal roof.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010470", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000704", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "the ophthalmic usually usually merges with the other two. In some vertebrates, the ophthalmic emerges from the brain separately[Kardong] The trigeminal nerve has 3 branches in mammals - similar branches are present in nonmammalian vertebrates, but in some a separate profundus nerve that corresponds to opthalmic branch in mammls" xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0001646 name: abducens nerve namespace: uberon def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "6n" BROAD OMO:0003000 [BIRNLEX:876, NIFSTD:NeuroNames_abbrevSource] synonym: "abducens nerve [VI]" EXACT [] synonym: "abducens nerve tree" EXACT [] synonym: "abducens nerve/root" RELATED [BAMS:6n] synonym: "abducens VI nerve" EXACT [] synonym: "abducent nerve" RELATED [] synonym: "abducent nerve [VI]" EXACT [] synonym: "abducents VI nerve" RELATED [EMAPA:18216] synonym: "CN-VI" RELATED [] synonym: "cranial nerve VI" RELATED [] synonym: "lateral rectus nerve" EXACT [] synonym: "nerve VI" RELATED [NeuroNames:550] synonym: "nervus abducens" EXACT [] synonym: "nervus abducens" RELATED OMO:0003011 [Wikipedia:Abducens_nerve] synonym: "nervus abducens [VI]" EXACT OMO:0003011 [FMA:50867, FMA:TA] synonym: "sixth cranial nerve" EXACT [] xref: AAO:0010471 xref: BAMS:VIn xref: BIRNLEX:876 xref: BM:Pons-VIN xref: EHDAA2:0000103 xref: EMAPA:18216 xref: FMA:50867 xref: GAID:824 xref: HBA:9325 xref: MA:0001087 xref: MBA:710 xref: MESH:D000010 xref: NCIT:C12665 xref: neuronames:550 {source="BIRNLEX:876"} xref: SCTID:180941005 xref: TAO:0000310 xref: UMLS:C0000741 {source="ncithesaurus:Abducens_Nerve", source="BIRNLEX:876"} xref: VHOG:0000697 xref: Wikipedia:Abducens_nerve xref: XAO:0003093 xref: ZFA:0000310 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Somatic motor nerve which bifurcates innervating m. rectus lateralis and m. retractor bulbi (eye muscles).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010471", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000697", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "Homologous abducens nerves are found in all vertebrates except lampreys and hagfishes.[WP] It controls the movement of a single muscle, the lateral rectus muscle of the eye, in humans. In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection" xsd:string {source="WP"} [Term] id: UBERON:0001647 name: facial nerve namespace: uberon def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "7n" BROAD OMO:0003000 [BIRNLEX:827, NIFSTD:NeuroNames_abbrevSource] synonym: "branchiomeric cranial nerve" EXACT [] synonym: "CN-VII" RELATED [] synonym: "cranial nerve VII" RELATED [] synonym: "face nerve" EXACT [OBOL:automatic] synonym: "facial nerve [VII]" EXACT [] synonym: "facial nerve or its root" RELATED [BAMS:7n] synonym: "facial nerve tree" EXACT [] synonym: "facial nerve/root" RELATED [BAMS:7n] synonym: "facial VII" EXACT [EHDAA2:0000489] synonym: "facial VII nerve" EXACT [] synonym: "nerve of face" EXACT [OBOL:automatic] synonym: "nerve VII" RELATED [NeuroNames:551] synonym: "nervus facialis" EXACT [ZFA:0000664] synonym: "nervus facialis" RELATED OMO:0003011 [Wikipedia:Facial_nerve] synonym: "nervus facialis [vii]" EXACT OMO:0003011 [FMA:50868, FMA:TA] synonym: "seventh cranial nerve" EXACT [] xref: AAO:0010472 xref: BAMS:7n xref: BAMS:nVII xref: BAMS:VIIn xref: BAMS:Viin xref: BIRNLEX:827 xref: BM:Pons-VIIN xref: EHDAA2:0000489 xref: EHDAA:3729 xref: EMAPA:17796 xref: FMA:50868 xref: GAID:719 xref: HBA:9328 xref: MA:0001091 xref: MBA:798 xref: MESH:D005154 xref: NCIT:C12714 xref: neuronames:551 {source="BIRNLEX:827"} xref: SCTID:362460007 xref: TAO:0000664 xref: UMLS:C0015462 {source="ncithesaurus:Facial_Nerve", source="BIRNLEX:827"} xref: VHOG:0000706 xref: Wikipedia:Facial_nerve xref: XAO:0003094 xref: ZFA:0000664 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Slender nerve composed of branchiomotor and visceral efferent fibers innervating the mouth and various muscles within the jaw. Sensory components innervate the bucccal roof and somatomotor components innervate the depressor musculature and muscle interhyoideus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010472", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000706", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001648 name: vestibulocochlear nerve namespace: uberon def: "Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "8n" BROAD OMO:0003000 [BIRNLEX:890, NIFSTD:NeuroNames_abbrevSource] synonym: "acoustic nerve" EXACT [FMA:50869] synonym: "acoustic nerve (Crosby)" EXACT [] synonym: "acoustic VIII nerve" EXACT [] synonym: "CN-VIII" EXACT [] synonym: "cochlear-vestibular nerve" EXACT [] synonym: "cochleovestibular nerve" EXACT [] synonym: "cranial nerve VIII" EXACT [] synonym: "eighth cranial nerve" EXACT [] synonym: "nervus octavus" RELATED OMO:0003011 [NeuroNames:553] synonym: "nervus statoacusticus" RELATED OMO:0003011 [NeuroNames:553] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "nervus vestibulocochlearis [viii]" EXACT OMO:0003011 [FMA:50869, FMA:TA] synonym: "octaval nerve" RELATED [] synonym: "stato-acoustic nerve" EXACT [] synonym: "statoacoustic nerve" RELATED [] synonym: "vestibulocochlear nerve [VIII]" EXACT [] synonym: "vestibulocochlear nerve tree" EXACT [] synonym: "vestibulocochlear VIII nerve" EXACT [] synonym: "VIII nerve" EXACT [] synonym: "VIIIth cranial nerve" EXACT [] xref: AAO:0010473 xref: BAMS:8n xref: BAMS:nVIII xref: BAMS:VIIIn xref: BIRNLEX:890 xref: BTO:0003490 xref: EHDAA2:0002194 xref: EMAPA:17801 xref: FMA:50869 xref: GAID:839 xref: HBA:9331 xref: MA:0001109 xref: MBA:933 xref: MESH:D000159 xref: NCIT:C12996 xref: neuronames:553 {source="BIRNLEX:890"} xref: SCTID:180945001 xref: TAO:0000247 xref: UMLS:C0001162 {source="BIRNLEX:890", source="ncithesaurus:Vestibulocochlear_Nerve"} xref: UMLS:C1278835 {source="BIRNLEX:890"} xref: VHOG:0000695 xref: Wikipedia:Vestibulocochlear_nerve xref: XAO:0003095 xref: ZFA:0000247 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Nerve primarily composed of special somatic afferent fibers innervating the inner ear, and is involved in balance, position, and hearing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010473", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000695", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001649 name: glossopharyngeal nerve namespace: uberon def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "9n" BROAD OMO:0003000 [BIRNLEX:899, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-IX" RELATED OMO:0003000 [] synonym: "cranial nerve IX" RELATED [] synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709] synonym: "glossopharyngeal IX nerve" EXACT [] synonym: "glossopharyngeal nerve [IX]" EXACT [] synonym: "glossopharyngeal nerve tree" EXACT [] synonym: "nerve IX" RELATED [NeuroNames:701] synonym: "nervus glossopharyngeus" EXACT [ZFA:0000668] synonym: "nervus glossopharyngeus" RELATED OMO:0003011 [Wikipedia:Glossopharyngeal_nerve] synonym: "nervus glossopharyngeus [ix]" EXACT OMO:0003011 [FMA:50870, FMA:TA] synonym: "ninth cranial nerve" EXACT [] xref: AAO:0010474 xref: BAMS:9n xref: BAMS:IXn xref: BIRNLEX:899 xref: BTO:0004979 xref: EHDAA2:0000709 xref: EHDAA:3733 xref: EMAPA:17268 xref: FMA:50870 xref: GAID:827 xref: HBA:9334 xref: MA:0001093 xref: MBA:808 xref: MESH:D005930 xref: NCIT:C12723 xref: neuronames:701 {source="BIRNLEX:899"} xref: SCTID:362465002 xref: TAO:0000668 xref: UMLS:C0017679 {source="BIRNLEX:899", source="ncithesaurus:Glossopharyngeal_Nerve"} xref: UMLS:C1305752 {source="BIRNLEX:899"} xref: VHOG:0000701 xref: Wikipedia:Glossopharyngeal_nerve xref: XAO:0003096 xref: ZFA:0000668 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Small nerve consisting of branchiomotor and visceral efferent and afferent fibers which innervate the m. subarculais rectus I, dorsal buccal mucosa, and the tongue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010474", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000701", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001650 name: hypoglossal nerve namespace: uberon def: "Cranial nerve that innervates the muscles of the tongue." [http://orcid.org/0000-0002-6601-2165, ISBN:080184780X, VHOG:0000693] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "12n" BROAD OMO:0003000 [BIRNLEX:820, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-XII" RELATED [VHOG:0000693] synonym: "cranial nerve XII" EXACT [BIRNLEX:820] synonym: "hypoglossal nerve [XII]" EXACT [] synonym: "hypoglossal nerve tree" EXACT [] synonym: "hypoglossal nerve/ root" RELATED [BAMS:12n] synonym: "hypoglossal XII" EXACT [EHDAA2:0000798] synonym: "hypoglossal XII nerve" EXACT [] synonym: "nerve XII" RELATED [NeuroNames:704] synonym: "nervi hypoglossalis" RELATED OMO:0003011 [NeuroNames:704] synonym: "nervus hypoglossus" RELATED OMO:0003011 [Wikipedia:Hypoglossal_nerve] synonym: "nervus hypoglossus [xii]" EXACT OMO:0003011 [FMA:50871, FMA:TA] synonym: "twelfth cranial nerve" EXACT [] xref: AAO:0010477 xref: BAMS:12n xref: BAMS:nXII xref: BAMS:XIIn xref: BIRNLEX:820 xref: BTO:0003386 xref: EHDAA2:0000798 xref: EHDAA:2859 xref: EMAPA:17269 xref: FMA:50871 xref: GAID:828 xref: HBA:9343 xref: MA:0001094 xref: MBA:813 xref: MESH:D007002 xref: NCIT:C12732 xref: neuronames:704 {source="BIRNLEX:820"} xref: SCTID:362471008 xref: UMLS:C0020614 {source="BIRNLEX:820", source="ncithesaurus:Hypoglossal_Nerve"} xref: VHOG:0000693 xref: Wikipedia:Hypoglossal_nerve xref: XAO:0004215 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray794.png" xsd:anyURI property_value: RO:0002174 NCBITaxon:8292 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Cranial nerve that innervates muscles in the tongue. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-14, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000693", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000001 "In amphibians, represents the hypoglossal nerve in amniotes. Innverates mm. geniohyoideus, genioglossus, hyoglossus, rectus cervicis" xsd:string {source="ISBN:080184780X"} property_value: UBPROP:0000001 "Nerve which innervates the muscles associated with the tongue including mm geniohyoideus, genioglossus, hyoglossus and rectus cervicis.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010477", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000693", ontology="VHOG", source="Wikipedia:Cranial_nerves", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "we use a broad definition of this cranial nerve that encompasses the amphibian predecessor of true amniote hypoglossal nerves" xsd:string [Term] id: UBERON:0001663 name: cerebral vein namespace: uberon def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [Wikipedia:Cerebral_veins] subset: pheno_slim synonym: "venae cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_veins] synonym: "venae encephali" RELATED OMO:0003011 [Wikipedia:Cerebral_veins] xref: EMAPA:37140 {source="MA:th"} xref: FMA:50981 xref: GAID:530 xref: MA:0002096 xref: MESH:D002550 xref: NCIT:C53037 xref: SCTID:244392000 xref: UMLS:C0007797 {source="ncithesaurus:Cerebral_Vein"} xref: Wikipedia:Cerebral_veins xref: XAO:0004160 is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:0001893 ! telencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png" xsd:anyURI property_value: UBPROP:0000202 FMA:70861 [Term] id: UBERON:0001664 name: inferior cerebral vein namespace: uberon def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebral_veins] subset: human_reference_atlas subset: uberon_slim synonym: "small cerebral vein" RELATED [] xref: EMAPA:37154 {source="MA:th"} xref: FMA:50986 xref: MA:0002097 xref: SCTID:244395003 xref: Wikipedia:Inferior_cerebral_veins is_a: UBERON:0001663 ! cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001672 name: anterior cerebral vein namespace: uberon subset: human_reference_atlas subset: vertebrate_core synonym: "ACeV" RELATED [] synonym: "rostral cerebral vein" RELATED [] xref: EMAPA:36467 xref: FMA:51306 xref: SCTID:55155007 xref: TAO:0001067 xref: XAO:0004158 xref: ZFA:0001067 is_a: UBERON:0001663 ! cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001675 name: trigeminal ganglion namespace: uberon def: "The cranial ganglion that is associated with and extends fibers into the trigeminal nerve." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/books/NBK53171, https://github.com/obophenotype/uberon/issues/693] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "5th ganglion" EXACT [ZFA:0000295] synonym: "fifth ganglion" EXACT [ZFA:0000295] synonym: "fused trigeminal ganglion" NARROW SENSU [NCBITaxon:32524] synonym: "ganglion of trigeminal complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ganglion of trigeminal nerve" RELATED [BTO:0001231] synonym: "ganglion semilunare" RELATED OMO:0003011 [Wikipedia:Trigeminal_ganglion] synonym: "ganglion trigeminale" RELATED OMO:0003011 [BTO:0001231, Wikipedia:Trigeminal_ganglion] synonym: "Gasser's ganglion" RELATED [BTO:0001231] synonym: "Gasserian ganglia" RELATED OMO:0003004 [Wikipedia:Trigeminal_ganglion] synonym: "Gasserian ganglion" EXACT [Wikipedia:Trigeminal_ganglion] synonym: "gV" RELATED [] synonym: "semilunar ganglion" EXACT [ISBN:0471888893] synonym: "trigeminal ganglia" RELATED OMO:0003004 [] synonym: "trigeminal V ganglion" EXACT [MA:0001080] synonym: "trigeminus ganglion" RELATED [] xref: AAO:0011107 xref: BAMS:5Gn xref: BAMS:GV xref: BTO:0001231 xref: EFO:0000903 xref: EHDAA2:0002085 xref: EHDAA:2113 xref: EMAPA:16797 xref: FMA:52618 xref: GAID:725 xref: MA:0001080 xref: MAT:0000511 xref: MESH:D012668 xref: NCIT:C62642 xref: neuronames:1402 xref: SCTID:244449009 xref: TAO:0000295 xref: UMLS:C0040995 {source="ncithesaurus:Trigeminal_Ganglion"} xref: VHOG:0000694 xref: Wikipedia:Trigeminal_ganglion xref: XAO:0000427 xref: XAO:0000428 xref: ZFA:0000295 is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png" xsd:anyURI property_value: IAO:0000116 "consider renaming this 'trigeminal ganglion complex'. The complex may be fused (amniotes) partially fused (xenopus) or separate (sharks)" xsd:string property_value: UBPROP:0000001 "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000295", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "In Xenopus, the profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." xsd:string {source="PMID:21452441", source="XAO:0004093"} [Term] id: UBERON:0001699 name: sensory root of facial nerve namespace: uberon def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [Wikipedia:Intermediate_nerve] subset: uberon_slim subset: vertebrate_core synonym: "intermediate nerve" RELATED [FMA:53410] synonym: "nerve of Wrisberg" RELATED [] synonym: "nervus intermedius" RELATED OMO:0003011 [FMA:53410, FMA:TA] synonym: "pars intermedii of Wrisberg" RELATED [] synonym: "sensory component of the VIIth (facial) nerve" EXACT [] synonym: "sensory roots of facial nerves" RELATED OMO:0003004 [ZFA:0000679] synonym: "Wrisberg's nerve" RELATED [FMA:53410] xref: BAMS:imn xref: BAMS:iVIIn xref: DHBA:12864 xref: FMA:53410 xref: MBA:1131 xref: neuronames:552 xref: SCTID:279927001 xref: TAO:0000679 xref: Wikipedia:Intermediate_nerve xref: ZFA:0000679 is_a: UBERON:0004674 ! facial nerve root relationship: part_of UBERON:0001896 ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png" xsd:anyURI [Term] id: UBERON:0001700 name: geniculate ganglion namespace: uberon def: "The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve)." [ISBN:0-683-40008-8, MP:0001082] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "facial ganglion" RELATED [ZFA:0001291] synonym: "facial VII ganglion" EXACT [MA:0001076] synonym: "ganglion genicularum" EXACT [FMA:53414] synonym: "ganglion geniculi" RELATED [Wikipedia:Geniculate_ganglion] synonym: "ganglion geniculi nervi facialis" RELATED OMO:0003011 [Wikipedia:Geniculate_ganglion] synonym: "genicular ganglion" EXACT [FMA:53414, Wikipedia:Geniculate_ganglion] synonym: "geniculate" BROAD [Wikipedia:Geniculate_ganglion] synonym: "geniculate ganglion" RELATED [MA:0001076] synonym: "gVII" EXACT [ZFA:0001291] synonym: "internal genu" RELATED [Wikipedia:Geniculate_ganglion] xref: BAMS:GgVII xref: EFO:0003669 xref: EHDAA2:0000491 xref: EHDAA2:0004623 xref: EHDAA:5567 xref: EHDAA:6644 xref: EMAPA:17569 xref: FMA:53414 xref: GAID:718 xref: MA:0001076 xref: MESH:D005830 xref: NCIT:C12721 xref: neuronames:1535 xref: SCTID:279076005 xref: TAO:0001291 xref: UMLS:C0017406 {source="ncithesaurus:Geniculate_Ganglion"} xref: VHOG:0000707 xref: Wikipedia:Geniculate_ganglion xref: ZFA:0001291 is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion is_a: UBERON:0009127 ! epibranchial ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png" xsd:anyURI property_value: IAO:0000116 "resolve facial VII vs geniculate (see EHDAA2)" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000707", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001701 name: glossopharyngeal ganglion namespace: uberon def: "The group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001096] subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "ganglion of glossopharyngeal nerve" EXACT [] synonym: "ganglion of glosspharyngeal nerve" EXACT [FMA:53471] synonym: "gIX" RELATED [] synonym: "glossopharyngeal IX ganglion" EXACT [MA:0001077] synonym: "petrosal ganglion" NARROW [ZFA:0001301] xref: EHDAA2:0000710 xref: EHDAA:2838 xref: EMAPA:16795 xref: FMA:53471 xref: MA:0001077 xref: SCTID:244451008 xref: TAO:0001301 xref: VHOG:0000702 xref: ZFA:0001301 is_a: UBERON:0009127 {source="ZFA"} ! epibranchial ganglion property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000702", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001714 name: cranial ganglion namespace: uberon alt_id: UBERON:0003213 alt_id: UBERON:0026601 def: "The groups of nerve cell bodies associated with the twelve cranial nerves." [ISBN:0-683-40008-8, MGI:csmith, MP:0001081, PMID:9362461] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cranial ganglia" RELATED [] synonym: "cranial ganglion" EXACT [] synonym: "cranial ganglion part of peripheral nervous system" EXACT [BIRNLEX:2597] synonym: "cranial ganglion/nerve" EXACT [] synonym: "cranial nerve ganglion" EXACT [] synonym: "cranial neural ganglion" EXACT [] synonym: "cranial neural tree organ ganglion" EXACT [OBOL:automatic] synonym: "ganglion of cranial nerve" EXACT [FMA:54502] synonym: "ganglion of cranial neural tree organ" EXACT [OBOL:automatic] synonym: "head ganglion" RELATED [] synonym: "presumptive cranial ganglia" RELATED [ZFA:0000013] xref: BIRNLEX:2597 xref: BTO:0000106 xref: EFO:0000902 xref: EMAPA:16659 xref: FMA:54502 xref: MA:0000213 xref: MA:0000214 xref: MAT:0000200 xref: MIAA:0000200 xref: SCTID:244448001 xref: TAO:0000013 xref: VHOG:0000076 xref: Wikipedia:Cranial_nerve_ganglion xref: XAO:0000027 xref: ZFA:0000013 is_a: UBERON:0000045 ! ganglion property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Ganglion which is located in the head.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000013", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0001715 name: oculomotor nuclear complex namespace: uberon def: "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534)." [BIRNLEX:1240] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "motor nucleus III" RELATED [] synonym: "nIII" RELATED [] synonym: "nucleus nervi oculomotorii" EXACT OMO:0003011 [FMA:54510, FMA:TA] synonym: "nucleus oculomotorius" RELATED OMO:0003011 [NeuroNames:492] synonym: "nucleus of oculomotor nerve" EXACT [FMA:54510] synonym: "nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of third cranial nerve" EXACT [FMA:54510] synonym: "oculomotor III nuclear complex" EXACT [] synonym: "oculomotor III nucleus" EXACT [MA:0001073] synonym: "oculomotor motornucleus" RELATED [XAO:0004389] synonym: "oculomotor nucleus" EXACT [FMA:54510] synonym: "OM" EXACT OMO:0003000 [XAO:0004389] synonym: "third cranial nerve nucleus" EXACT [FMA:54510] xref: BAMS:3 xref: BAMS:III xref: BIRNLEX:1240 xref: BM:MB-III xref: DHBA:12198 xref: EFO:0002468 xref: EHDAA2:0004211 xref: EMAPA:35605 xref: EV:0100250 xref: FMA:54510 xref: HBA:9030 xref: MA:0001073 xref: MBA:35 xref: MESH:D065838 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12897 xref: neuronames:492 {source="BIRNLEX:1240"} xref: SCTID:362457000 xref: TAO:0000553 xref: UMLS:C0228686 {source="ncithesaurus:Oculomotor_Nucleus", source="BIRNLEX:1240"} xref: VHOG:0001389 xref: Wikipedia:Nucleus_of_oculomotor_nerve xref: XAO:0004389 xref: ZFA:0000553 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001943 {source="ZFA"} ! midbrain tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} property_value: UBPROP:0000001 "The nucleus of the oculomotor nerve (cranial nerve III)[XAO:0004389]." xsd:string {source="XAO:0004389"} property_value: UBPROP:0000202 FMA:84019 [Term] id: UBERON:0001717 name: spinal nucleus of trigeminal nerve namespace: uberon def: "Nucleus extending from the upper spinal cord through the pontine tegmentum that receives sensory inputs from the trigeminal nerve. It is continuous caudally with the dorsal gray matter of the spinal cord." [NLX:12995] subset: human_reference_atlas subset: uberon_slim synonym: "nucleus spinalis nervi trigemini" RELATED OMO:0003011 [Wikipedia:Spinal_trigeminal_nucleus] synonym: "spinal nucleus of cranial nerve v" EXACT [] synonym: "spinal nucleus of the trigeminal" RELATED [BAMS:SPV] synonym: "spinal trigeminal nucleus" EXACT [GO:0021741] synonym: "trigeminal nerve spinal tract nucleus" EXACT [] synonym: "trigeminal spinal nucleus" EXACT [] synonym: "trigeminal spinal sensory nucleus" RELATED [EMAPA:35885] synonym: "trigeminal v spinal sensory nucleus" EXACT [] xref: BAMS:Sp5 xref: BAMS:SPV xref: BM:VSp xref: DHBA:12572 xref: EMAPA:35885 xref: FMA:54565 xref: GAID:605 xref: HBA:9676 xref: MA:0001053 xref: MESH:D014279 xref: NCIT:C33188 xref: neuronames:1732 xref: NLX:12995 xref: SCTID:369033006 xref: UMLS:C0041000 {source="ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve"} xref: VHOG:0001357 xref: Wikipedia:Spinal_trigeminal_nucleus is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001718 name: mesencephalic nucleus of trigeminal nerve namespace: uberon def: "Elongated nucleus located in the midbrain tegmentum that receives proprioceptive input from both teh extraocular and the masticatory muscles. Contrary to the general rule, the cell bodies that give rise to these sensory fibers are located within the mesencephalic nucleus rather than in a peripheral ganglion. Some of the sensory fibers in the mesencephalic root give off collaterals to the trigeminal motor nucleus, thereby providing the anatomic basis for the monosynaptic jaw reflex. (Heimer, L. The Human Brain and Spinal Cord, 2nd ed. 1996, page 248)." [BIRNLEX:1010] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Me5" BROAD OMO:0003000 [BIRNLEX:1010, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalic nuclei of trigeminal nerves" RELATED OMO:0003004 [ZFA:0000312] synonym: "mesencephalic nucleus" BROAD [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "mesencephalic nucleus of the trigeminal" RELATED [BAMS:MEV] synonym: "mesencephalic nucleus of the trigeminal nerve" RELATED [NeuroNames:558] synonym: "mesencephalic trigeminal nucleus" EXACT [GO:0021739] synonym: "mesencephalic trigeminal V nucleus" EXACT [] synonym: "midbrain trigeminal nucleus" RELATED [NeuroNames:558] synonym: "nucleus mesencephalicus nervi trigeminalis" RELATED OMO:0003011 [NeuroNames:558] synonym: "nucleus mesencephalicus nervi trigemini" RELATED OMO:0003011 [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "nucleus of mesencephalic root of v" EXACT [] synonym: "nucleus tractus mesencephalici nervi trigemini" RELATED OMO:0003011 [NeuroNames:558] synonym: "nucleus tractus mesencephalicus nervi trigemini" RELATED OMO:0003011 [NeuroNames:558] synonym: "trigeminal mesencephalic nucleus" EXACT [] synonym: "trigeminal nerve mesencepahlic nucleus" EXACT [] synonym: "trigeminal V mesencephalic nucleus" EXACT [MA:0001057] xref: BAMS:Me5 xref: BAMS:MEV xref: BIRNLEX:1010 xref: BM:Pons-5ME xref: DHBA:12208 xref: EMAPA:35881 xref: EV:0100252 xref: FMA:54568 xref: HBA:9205 xref: MA:0001057 xref: MBA:460 xref: neuronames:558 {source="BIRNLEX:1010"} xref: SCTID:369032001 xref: TAO:0000312 xref: UMLS:C0228702 {source="BIRNLEX:1010"} xref: VHOG:0001354 xref: Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve xref: ZFA:0000312 is_a: UBERON:0004132 ! trigeminal sensory nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: UBPROP:0000011 "develops from NC in some species[https://github.com/obophenotype/uberon/wiki/The-neural-crest] Not of NC origin[DOI:10.1002/dvdy.1197]." xsd:string {source="PMID:11747082"} property_value: UBPROP:0000012 "part of midbrain tegmentum in NIF and MA. the neurons of the mesencephalic trigeminal nucleus are the only centrally located primary sensory neurons in amniotes; all others are extramedullary" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0001719 name: nucleus ambiguus namespace: uberon def: "A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus] subset: uberon_slim synonym: "Amb" BROAD OMO:0003000 [BIRNLEX:2650, NIFSTD:NeuroNames_abbrevSource] synonym: "ambiguous nucleus" RELATED [NeuroNames:765] synonym: "ambiguus nucleus" EXACT [] synonym: "nucleus innominatus" RELATED OMO:0003011 [NeuroNames:765] xref: BAMS:AMB xref: BAMS:Amb xref: BIRNLEX:2650 xref: BM:Me-AMB xref: DHBA:12540 xref: EHDAA2:0004305 xref: EMAPA:35596 xref: EV:0100292 xref: FMA:54588 xref: HBA:9516 xref: MA:0001050 xref: MBA:135 xref: NCIT:C12835 xref: neuronames:765 {source="BIRNLEX:2650"} xref: SCTID:280184006 xref: UMLS:C0152400 {source="BIRNLEX:2650", source="ncithesaurus:Nucleus_Ambiguus"} xref: UMLS:C1281211 {source="BIRNLEX:2650"} xref: Wikipedia:Nucleus_ambiguus is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png" xsd:anyURI property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} [Term] id: UBERON:0001720 name: cochlear nucleus namespace: uberon def: "Any of the nuclei of the cochlear nuclear complex." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cochlear nucleus of acoustic nerve" EXACT [] synonym: "cochlear nucleus of eighth cranial nerve" EXACT [] synonym: "cochlear VIII nucleus" EXACT [MA:0001012] synonym: "nucleus of cochlear nerve" EXACT [] synonym: "statoacoustic (VIII) nucleus" EXACT [] synonym: "vestibulocochlear nucleus" RELATED [] xref: EMAPA:35248 xref: FMA:54603 xref: GAID:601 xref: MA:0001012 xref: MESH:D017626 xref: NCIT:C12837 xref: SCTID:362463009 xref: TAO:0002243 xref: Wikipedia:Cochlear_nucleus xref: ZFA:0001638 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002610 ! cochlear nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png" xsd:anyURI [Term] id: UBERON:0001721 name: inferior vestibular nucleus namespace: uberon def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus] subset: uberon_slim synonym: "descending vestibular nucleus" EXACT [FMA:54608] synonym: "nucleus vestibularis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_vestibular_nucleus] synonym: "spinal vestibular nucleus" EXACT [FMA:54608] xref: BAMS:IVe xref: BAMS:SPIV xref: BAMS:SpVe xref: BAMS:SPVN xref: BM:Me-VS-VSI xref: BTO:0004369 xref: EMAPA:35797 xref: EV:0100258 xref: FMA:54608 xref: HBA:9702 xref: MA:0001054 xref: MBA:225 xref: NCIT:C33591 xref: neuronames:718 xref: SCTID:280175006 xref: UMLS:C0175498 {source="ncithesaurus:Spinal_Vestibular_Nucleus"} xref: Wikipedia:Inferior_vestibular_nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png" xsd:anyURI property_value: RO:0002171 UBERON:0001722 {source="ABA"} property_value: RO:0002171 UBERON:0007227 {source="ABA"} property_value: RO:0002171 UBERON:0007230 {source="ABA"} [Term] id: UBERON:0001722 name: medial vestibular nucleus namespace: uberon def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus] subset: uberon_slim synonym: "chief vestibular nucleus" EXACT [FMA:54611] synonym: "dorsal vestibular nucleus" EXACT [FMA:54611] synonym: "medial nucleus" RELATED [Wikipedia:Medial_vestibular_nucleus] synonym: "nucleus of Schwalbe" EXACT [FMA:54611] synonym: "nucleus triangularis" EXACT OMO:0003011 [FMA:54611, FMA:TA] synonym: "nucleus vestibularis medialis" RELATED OMO:0003011 [Wikipedia:Medial_vestibular_nucleus] synonym: "principal vestibular nucleus" EXACT [FMA:54611] synonym: "Schwalbe's nucleus" EXACT [FMA:54611] synonym: "triangular nucleus" EXACT [FMA:54611] xref: BAMS:MV xref: BAMS:MVe xref: BAMS:MVN xref: BAMS:VMN xref: BM:Me-VS-VSM xref: BTO:0004371 xref: DHBA:12581 xref: EMAPA:35554 xref: FMA:54611 xref: HBA:9700 xref: MA:0001048 xref: MBA:202 xref: NCIT:C33069 xref: neuronames:717 xref: PBA:10125 xref: SCTID:280174005 xref: UMLS:C0036385 {source="ncithesaurus:Medial_Vestibular_Nucleus"} xref: Wikipedia:Medial_vestibular_nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg" xsd:anyURI property_value: RO:0002171 UBERON:0001721 {source="ABA"} property_value: RO:0002171 UBERON:0007227 {source="ABA"} property_value: RO:0002171 UBERON:0007230 {source="ABA"} [Term] id: UBERON:0001727 name: taste bud namespace: uberon def: "A specialized receptor organ that is a collection of cells spanning the gustatory epithelium." [http://periowiki.wikispot.org/Taste_bud_histology] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caliculus gustatorius" RELATED OMO:0003004 [Wikipedia:Taste_bud] synonym: "taste buds" RELATED OMO:0003004 [Wikipedia:Taste_bud] synonym: "taste-bud" RELATED [Wikipedia:Taste_bud] synonym: "tastebud" EXACT [Wikipedia:Taste_bud] synonym: "tastebuds" RELATED OMO:0003004 [Wikipedia:Taste_bud] xref: AAO:0010573 xref: BIRNLEX:4101 xref: BTO:0000989 xref: CALOHA:TS-1015 xref: EMAPA:35850 xref: FMA:54825 xref: GAID:815 xref: http://uri.neuinfo.org/nif/nifstd/nifext_14 xref: MA:0001591 xref: MESH:D013650 xref: NCIT:C96518 xref: SCTID:362099006 xref: TAO:0001074 xref: UMLS:C0039337 {source="ncithesaurus:Taste_Bud", source="BIRNLEX:4101"} xref: VHOG:0000130 xref: Wikipedia:Taste_bud xref: XAO:0000445 xref: ZFA:0001074 is_a: UBERON:0003212 ! gustatory organ relationship: part_of UBERON:0002926 {source="NIF"} ! gustatory epithelium property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png" xsd:anyURI property_value: RO:0002171 UBERON:0002467 {source="http://periowiki.wikispot.org/Taste_bud_histology"} property_value: UBPROP:0000001 "A chemoreceptive organ.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010573", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "One of a number of receptor cell nests located in the epithelium of the papillae of the tongue and in the soft palate, epiglottis, and pharynx that mediate the sense of taste. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/taste+bud"} property_value: UBPROP:0000003 "Experients in amphibia have shown that an intrinsic feature of the pharyngeal endoderm is its ability to generate taste buds and this capacity must have been acquired by the endoderm at the origin of the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "In humans, saste buds may be found on the tongue, soft palatte, epiglottis and upper pharynx. In other species they may be found in more unusual places, such as the trunk, or on the barbels or fins of fish." xsd:string property_value: UBPROP:0000011 "arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN:1607950324 (todo - request cell terms from CL)" xsd:string [Term] id: UBERON:0001759 name: vagus nerve namespace: uberon def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "10n" BROAD OMO:0003000 [BIRNLEX:801, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-X" RELATED [] synonym: "cranial nerve X" RELATED [] synonym: "nerve X" RELATED [NeuroNames:702] synonym: "nervus vagus" RELATED OMO:0003011 [BTO:0003472, Wikipedia:Vagus_nerve] synonym: "nervus vagus [x]" EXACT OMO:0003011 [FMA:5731, FMA:TA] synonym: "pneuomgastric nerve" RELATED [BTO:0003472] synonym: "tenth cranial nerve" EXACT [] synonym: "vagal nerve" RELATED [] synonym: "vagus" EXACT [] synonym: "vagus nerve [X]" EXACT [] synonym: "vagus nerve or its root" RELATED [BAMS:10n] synonym: "vagus nerve tree" EXACT [] synonym: "vagus X nerve" EXACT [MA:0001106] xref: AAO:0010475 xref: BAMS:10n xref: BAMS:Xn xref: BIRNLEX:801 xref: BTO:0003472 xref: EFO:0002549 xref: EMAPA:37797 {source="MA:th"} xref: FMA:5731 xref: GAID:721 xref: galen:VagusNerve xref: HBA:9337 xref: MA:0001106 xref: MBA:917 xref: MESH:D014630 xref: NCIT:C12812 xref: neuronames:702 {source="BIRNLEX:801"} xref: SCTID:362466001 xref: TAO:0000453 xref: UMLS:C0042276 {source="ncithesaurus:Vagus_Nerve", source="BIRNLEX:801"} xref: UMLS:C1305910 {source="BIRNLEX:801"} xref: VHOG:0000737 xref: Wikipedia:Vagus_nerve xref: XAO:0003097 xref: ZFA:0000453 is_a: UBERON:0001785 ! cranial nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Nerve consisting of branchiomotor and visceral efferent fibers which branch and innervate the smooth muscles and glands of the heart, lungs, esophagus, and stomach as well as some throat muscles. Sensory fibers supply mucosa of the mouth and pharynx.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010475", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000737", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001780 name: spinal nerve namespace: uberon def: "The any of the paired peripheral nerves formed by the union of the dorsal and ventral spinal roots from each spinal cord segment[MP,modified]." [MESH:A08.800.800.720, MP:0001077] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "backbone nerve" EXACT [OBOL:automatic] synonym: "nerve of backbone" EXACT [OBOL:automatic] synonym: "nerve of spinal column" EXACT [OBOL:automatic] synonym: "nerve of spine" EXACT [OBOL:automatic] synonym: "nerve of vertebral column" EXACT [OBOL:automatic] synonym: "nervi spinales" RELATED OMO:0003011 [Wikipedia:Spinal_nerve] synonym: "spinal column nerve" EXACT [OBOL:automatic] synonym: "spinal nerve tree" EXACT [] synonym: "spinal nerves" RELATED OMO:0003004 [BAMS:spin] synonym: "spine nerve" EXACT [OBOL:automatic] synonym: "vertebral column nerve" EXACT [OBOL:automatic] xref: AAO:0011101 xref: BAMS:spin xref: BTO:0000870 xref: EHDAA2:0001898 xref: EMAPA:16989 xref: FMA:5858 xref: GAID:841 xref: MA:0000233 xref: MESH:D013127 xref: NCIT:C12792 xref: neuronames:1228 xref: SCTID:361099009 xref: UMLS:C0037941 {source="ncithesaurus:Spinal_Nerve"} xref: VHOG:0000824 xref: Wikipedia:Spinal_nerve xref: XAO:0003101 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Any of the paired nerves emerging from the spinal cord, each attached to the cord by two roots: ventral and dorsal, and passing out between the vertebrae. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000824", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/spinal+nerve"} [Term] id: UBERON:0001781 name: layer of retina namespace: uberon def: "Any of the layers that make up the retina[MP]." [MP:0003727] subset: pheno_slim subset: vertebrate_core synonym: "retina layer" EXACT [] synonym: "retina neuronal layer" EXACT [MP:0006069] synonym: "retinal layer" EXACT [] synonym: "retinal neuronal layer" EXACT [MP:0006069] xref: AAO:0010353 xref: EMAPA:35742 xref: FMA:58617 xref: MA:0001319 xref: NCIT:C49328 xref: SCTID:280657006 xref: UMLS:C0459649 {source="ncithesaurus:Retina_Layer"} xref: XAO:0000266 is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000012 "MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001782 name: pigmented layer of retina namespace: uberon def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithelium, retinal pigment" RELATED [BTO:0001177] synonym: "outer pigmented layer of retina" EXACT [] synonym: "p. pigmentosa retinae" RELATED OMO:0003011 [Wikipedia:Retinal_pigment_epithelium] synonym: "pigment epithelium of retina" EXACT [] synonym: "pigmented epithelium" RELATED [] synonym: "pigmented retina" RELATED [] synonym: "pigmented retina epithelium" EXACT [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "PRE" RELATED [] synonym: "retinal pigment epithelium" EXACT [MP:0005201, Wikipedia:Retinal_pigment_epithelium] synonym: "retinal pigment layer" RELATED [VHOG:0000536] synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144] synonym: "RPE" RELATED [] synonym: "stratum pigmentosa retinae" RELATED OMO:0003011 [Wikipedia:Retinal_pigment_epithelium] synonym: "stratum pigmentosum (retina)" EXACT [] synonym: "stratum pigmentosum retinae" EXACT OMO:0003011 [FMA:58627, FMA:TA] xref: AAO:0011096 xref: BTO:0001177 xref: CALOHA:TS-0869 xref: EHDAA2:0001465 xref: EHDAA:4765 xref: EMAPA:17172 xref: EMAPA:35738 xref: FMA:58627 xref: MA:0000279 xref: MA:0003173 xref: NCIT:C33470 xref: SCTID:280662007 xref: TAO:0000144 xref: UMLS:C0035322 {source="ncithesaurus:Retinal_Pigment_Epithelium"} xref: VHOG:0000536 xref: Wikipedia:Retinal_pigment_epithelium xref: XAO:0003217 xref: ZFA:0000144 is_a: UBERON:0001781 ! layer of retina property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000144", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The monolayer of pigmented epithelium covering the neural retina.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011096", ontology="AAO", source="ZFA:0000144"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000536", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001783 name: optic disc namespace: uberon def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "optic disk" EXACT [MESH:A08.800.800.120.680.660] synonym: "optic disk" RELATED [Wikipedia:Optic_disc] synonym: "optic nerve disc" RELATED [Wikipedia:Optic_disc] synonym: "optic nerve head" RELATED [Wikipedia:Optic_disc] synonym: "optic papilla" RELATED [Wikipedia:Optic_disc] synonym: "physiologic blind spot" RELATED [Wikipedia:Optic_disc] synonym: "physiologic blind spot of mariotte" RELATED [Wikipedia:Optic_disc] xref: CALOHA:TS-2153 xref: EFO:0001974 xref: EHDAA2:0001307 xref: EHDAA:9077 xref: EMAPA:18238 xref: FMA:58634 xref: MA:0000278 xref: MESH:D009898 xref: NCIT:C12760 xref: SCTID:362518006 xref: UMLS:C0029127 {source="ncithesaurus:Optic_Disc"} xref: VHOG:0000551 xref: Wikipedia:Optic_disc relationship: part_of UBERON:0000966 ! retina property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The small blind spot on the surface of the retina. It is the point where the fibers of the retina leave the eye and become part of the optic nerve. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/optic+disc"} property_value: UBPROP:0000003 "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001785 name: cranial nerve namespace: uberon def: "Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord." [Wikipedia:Cranial_nerve] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cranial nerves" RELATED [] synonym: "cranial neural tree organ" EXACT [] synonym: "nervus cranialis" RELATED OMO:0003011 [Wikipedia:Cranial_nerve] xref: AAO:0000108 xref: BAMS:cran xref: BIRNLEX:1623 xref: BTO:0001104 xref: EHDAA2:0000323 xref: EMAPA:17264 xref: FMA:5865 xref: GAID:802 xref: HBA:9299 xref: MA:0000215 xref: MBA:967 xref: MESH:D003391 xref: NCIT:C12700 xref: neuronames:1227 xref: SCTID:244447006 xref: TAO:0000641 xref: UMLS:C0010268 {source="BIRNLEX:1623", source="ncithesaurus:Cranial_Nerve"} xref: UMLS:C1269897 {source="BIRNLEX:1623"} xref: VHOG:0000279 xref: Wikipedia:Cranial_nerve xref: XAO:0000429 xref: XAO:0003089 xref: ZFA:0000641 is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0034713 ! cranial neuron projection bundle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Brain_human_normal_inferior_view_with_labels_en-2.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/84/Brain_human_normal_inferior_view_with_labels_en.svg" xsd:anyURI property_value: IAO:0000116 "classified as neural tree organ, not nerve in FMA. CN II poses a challenge here as it is not strictly a nerve, yet is expected to be classified under CN." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000641", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000279", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6" xsd:string [Term] id: UBERON:0001786 name: fovea centralis namespace: uberon def: "A depression in the inner retinal surface within the macula lutea, the photoreceptor layer of which is entirely cones and which is specialized for maximum visual acuity." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Fovea] subset: pheno_slim subset: uberon_slim synonym: "centre of fovea" RELATED [BIRNLEX:2543] synonym: "centre of macula" EXACT [BIRNLEX:2543] synonym: "fovea" BROAD [] synonym: "fovea centralis in macula" EXACT [Wikipedia:Fovea_centralis_in_macula] xref: BIRNLEX:2543 xref: CALOHA:TS-2055 xref: EMAPA:37589 {source="MA:th"} xref: EV:0100350 xref: FMA:58658 xref: GAID:910 xref: MA:0001307 xref: MESH:D005584 xref: NCIT:C26463 xref: SCTID:264479005 xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis", source="BIRNLEX:2543"} xref: UMLS:C0450290 {source="BIRNLEX:2543"} xref: VHOG:0001572 xref: Wikipedia:Fovea_centralis_in_macula relationship: part_of UBERON:0000053 ! macula lutea property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: UBPROP:0000001 "A small pit in the center of the macula lutea, the area of clearest vision, where the retinal layers are spread aside, and light falls directly on the cones. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/fovea"} property_value: UBPROP:0000003 "Definition of fovea centralis should be considered here as 'an area centralis at the visual axis' (reference 1). There is an uncertaincy of the relation, because: 1.-The fovea first appeared in evolution in the temporal retina of fishes. Then, in birds, the nasal fovea and bifoveal system with nasal and temporal foveas developed. The fovea disappeared in primitive mammals, and reappeared in primates. A residue of the fovea is conserved in the visual streak, and the disappearance and reappearance of the fovea, in primitive mammals and primates respectively, correlates with degeneration and restoration of cone pigment genes in photoreceptors (reference 2). 2.-Many retinal features (foveas, trichromacy, midget pathways and associated cell types) appear specific to primates. This has led to investigations in parallel with other mammalian models such as cat or rabbit. Correlation of the results often proves to be difficult, since an evolutionary scenario with transitions between the mammalian models is largely lacking (reference 3).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="DOI:10.1017/S095252380623342X Ahnelt PK, Schubert C, Kübber-Heiss A, Schiviz A, Anger E, Independent variation of retinal S and M cone photoreceptor topographies: A survey of four families of mammals. Visual neuroscience (2006), http://www.ncbi.nlm.nih.gov/pubmed/11193946 Azuma N, Molecular cell biology on morphogenesis of the fovea and evolution of the central vision. Nihon Ganka Gakkai Zasshi (2000), DOI:10.1016/S1350-9462(00)00012-4 Ahnelt PK, Kolb H, The mammalian photoreceptor mosaic-adaptive design. Progress in Retinal and Eye Research (2000)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "foveal" xsd:string property_value: UBPROP:0000008 "The fovea is also a pit in the surface of the retinas of many types of fish, reptiles, and birds. Among mammals, it is found only in simian primates. The retinal fovea takes slightly different forms in different types of animals. For example, in primates, cone photoreceptors line the base of the foveal pit, the cells that elsewhere in the retina form more superficial layers having been displaced away from the foveal region during late fetal and early postnatal life. Other foveae may show only a reduced thickness in the inner cell layers, rather than an almost complete absence" xsd:string property_value: UBPROP:0000009 "high acuity vision" xsd:string [Term] id: UBERON:0001787 name: photoreceptor layer of retina namespace: uberon def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "layer of rods and cones" RELATED [] synonym: "retina photoreceptor layer" EXACT [] synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143] synonym: "retinal photoreceptor layers" RELATED OMO:0003004 [ZFA:0000143] synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] synonym: "stratum segmentorum externorum et internorum retinae" EXACT OMO:0003011 [FMA:58680, FMA:TA] xref: EMAPA:35686 xref: FMA:58680 xref: MA:0001308 xref: NCIT:C32954 xref: TAO:0000143 xref: UMLS:C0229206 {source="ncithesaurus:Layer_of_the_Rods_and_Cones"} xref: VHOG:0001165 xref: Wikipedia:Layer_of_rods_and_cones xref: XAO:0003215 xref: ZFA:0000143 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001165", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "we follow MA and ZFA in subdividing this into inner and outer segments" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001788 name: outer limiting layer of retina namespace: uberon def: "The row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109, MP:0010236] subset: pheno_slim subset: vertebrate_core synonym: "blood retina barrier" RELATED [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] synonym: "BRB" RELATED OMO:0003000 [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] synonym: "external limiting lamina of retina" EXACT [] synonym: "external limiting membrane" EXACT [ZFA:0001331] synonym: "external limiting membrane of retina" EXACT [] synonym: "outer limiting membrane" EXACT [XAO:0003224] synonym: "outer limiting membrane of retina" EXACT [] synonym: "outer limiting membranes" RELATED OMO:0003004 [ZFA:0001331] synonym: "retina external limiting lamina" EXACT [] synonym: "retina outer limiting membrane" EXACT [MP:0010236] synonym: "stratum limitans externum (retina)" EXACT [] synonym: "stratum limitans externum retinae" EXACT OMO:0003011 [FMA:58683, FMA:TA] xref: EMAPA:36518 xref: FMA:58683 xref: MA:0001309 xref: NCIT:C33235 xref: SCTID:280676008 xref: TAO:0001331 xref: UMLS:C1518685 {source="ncithesaurus:Outer_Limiting_Membrane"} xref: Wikipedia:External_limiting_membrane xref: XAO:0003224 xref: ZFA:0001331 is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina [Term] id: UBERON:0001789 name: outer nuclear layer of retina namespace: uberon def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "external nuclear layer" RELATED [BTO:0005600] synonym: "layer of outer granules" RELATED [BTO:0005600] synonym: "neural retina outer nuclear layer" EXACT [EMAPA:19157] synonym: "ONL" NARROW [] synonym: "outer nuclear layer" BROAD [] synonym: "retina outer nuclear layer" EXACT [] synonym: "retina, outer nuclear layer" RELATED [BAMS:Ronl] synonym: "retinal outer nuclear layer" EXACT [] synonym: "retinal outer nuclear layers" RELATED OMO:0003004 [ZFA:0001464] synonym: "stratum nucleare externum (retina)" EXACT [] synonym: "stratum nucleare externum retinae" EXACT OMO:0003011 [FMA:58684, FMA:TA] xref: BAMS:Ronl xref: BTO:0005600 xref: EMAPA:19157 xref: FMA:58684 xref: MA:0001315 xref: NCIT:C33236 xref: SCTID:280678009 xref: TAO:0001464 xref: UMLS:C0229210 {source="ncithesaurus:Outer_Nuclear_Layer_of_Retina"} xref: VHOG:0001170 xref: Wikipedia:Outer_nuclear_layer xref: XAO:0003219 xref: ZFA:0001464 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001170", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001790 name: outer plexiform layer of retina namespace: uberon def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] subset: pheno_slim subset: vertebrate_core synonym: "external plexiform layer" BROAD [BTO:0003174] synonym: "OPL" NARROW OMO:0003000 [] synonym: "outer plexiform layer" EXACT [BTO:0003174] synonym: "retina outer plexiform layer" EXACT [] synonym: "retina, outer plexiform layer" RELATED [BAMS:Ropl] synonym: "retinal outer plexiform layer" EXACT [] synonym: "retinal outer plexiform layers" RELATED OMO:0003004 [ZFA:0001330] synonym: "stratum plexiforme externum" EXACT [] synonym: "stratum plexiforme externum retinae" EXACT OMO:0003011 [FMA:58685, FMA:TA] xref: BAMS:Ropl xref: BTO:0003174 xref: EMAPA:35744 xref: FMA:58685 xref: MA:0001316 xref: NCIT:C33237 xref: SCTID:280684007 xref: TAO:0001330 xref: UMLS:C0229217 {source="ncithesaurus:Outer_Plexiform_Layer"} xref: VHOG:0001171 xref: Wikipedia:Outer_plexiform_layer xref: XAO:0003218 xref: ZFA:0001330 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the photoreceptor cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001330", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001171", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001791 name: inner nuclear layer of retina namespace: uberon def: "Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia)." [NLX:93816] comment: AO notes NLXANAT:1005031 appears to be retired subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "INL" NARROW [] synonym: "inner nuclear layer" EXACT [] synonym: "intermediate cell layer" EXACT [ZFA:0000119] synonym: "layer of inner granules" RELATED [NLX:93816] synonym: "neural retina inner nuclear layer" EXACT [EMAPA:19155] synonym: "retina inner nuclear layer" EXACT [] synonym: "retina, inner nuclear layer" RELATED [BAMS:Rinl] synonym: "retinal inner nuclear layer" EXACT [] synonym: "stratum nucleare internum" EXACT [] synonym: "stratum nucleare internum retinae" EXACT OMO:0003011 [FMA:58686, FMA:TA] xref: BAMS:Rinl xref: BTO:0003176 xref: EMAPA:19155 xref: FMA:58686 xref: MA:0001311 xref: NCIT:C32808 xref: NLX:93816 xref: NLXANAT:1005031 xref: SCTID:362520009 xref: TAO:0000119 xref: UMLS:C0229211 {source="ncithesaurus:Inner_Nuclear_Layer"} xref: VHOG:0001167 xref: Wikipedia:Inner_nuclear_layer xref: XAO:0003221 xref: ZFA:0000119 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells[BTO:0003176]." xsd:string {source="BTO:0003176"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001167", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001792 name: ganglionic layer of retina namespace: uberon def: "Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer." [NLX:36500] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglion cell layer" BROAD [FMA:58687, ZFA:0000024] synonym: "ganglionic cell layer of retina" EXACT [FMA:58687] synonym: "GCL layer" EXACT [] synonym: "retina ganglion cell layer" EXACT [] synonym: "retina ganglion layer" EXACT [] synonym: "retina, ganglion cell layer" RELATED [BAMS:Rgcl] synonym: "retinal ganglion cell layer" EXACT [] synonym: "retinal ganglion layer" EXACT [MP:0008510] synonym: "RGC layer" EXACT [] synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687] synonym: "stratum ganglionicum retinae" RELATED OMO:0003011 [Wikipedia:Ganglion_cell_layer] xref: BAMS:Rgcl xref: BTO:0003398 xref: CALOHA:TS-0867 xref: EMAPA:35739 xref: FMA:58687 xref: MA:0001310 xref: NCIT:C32652 xref: NLX:36500 xref: NLXANAT:1005030 xref: SCTID:280670002 xref: TAO:0000024 xref: VHOG:0001166 xref: Wikipedia:Ganglion_cell_layer xref: XAO:0003223 xref: ZFA:0000024 is_a: UBERON:0001781 {source="FMA"} ! layer of retina relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain[Wikipedia:Ganglion_cell_layer]." xsd:string {source="Wikipedia:Ganglion_cell_layer"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001166", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030]" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0001793 name: nerve fiber layer of retina namespace: uberon alt_id: UBERON:0005888 def: "Layer of the retina formed by expansion of the fibers of the optic nerve." [ISBN:0-914294-08-3, MGI:smb] subset: pheno_slim subset: vertebrate_core synonym: "layer of nerve fibers of retina" EXACT [] synonym: "layer of nerve fibres of retina" EXACT [] synonym: "nerve fiber layer" BROAD [ZFA:0001619] synonym: "neural retina nerve fibre layer" RELATED [EMAPA:18591] synonym: "optic fiber layer" EXACT [DMBA:15652] synonym: "optic fiber layer" RELATED [VHOG:0001169] synonym: "optic fiber layers" RELATED OMO:0003004 [TAO:0002212] synonym: "retina nerve fiber layer" EXACT [] synonym: "stratum neurofibrarum (retina)" EXACT [] synonym: "stratum neurofibrarum retinae" EXACT OMO:0003011 [FMA:58688, FMA:TA] synonym: "stratum neurofibrum retinae" RELATED OMO:0003011 [Wikipedia:Nerve_fiber_layer] synonym: "stratum opticum of retina" EXACT [] xref: DMBA:15652 xref: EMAPA:18591 xref: FMA:58688 xref: MA:0001314 xref: SCTID:280671003 xref: TAO:0002212 xref: VHOG:0001169 xref: Wikipedia:Nervous_system_fiber_layer xref: XAO:0003220 xref: ZFA:0001619 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001169", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001794 name: inner limiting layer of retina namespace: uberon def: "The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] subset: pheno_slim subset: vertebrate_core synonym: "ILM" BROAD OMO:0003000 [ZFA:0001029] synonym: "inner limiting membrane" EXACT [XAO:0003222] synonym: "inner limiting membrane of retina" EXACT [] synonym: "inner limiting membranes" RELATED OMO:0003004 [ZFA:0001029] synonym: "internal limiting lamina of retina" EXACT [] synonym: "internal limiting membrane of retina" EXACT [] synonym: "retina inner limiting membrane" EXACT [MP:0010235] synonym: "retina internal limiting lamina" EXACT [] synonym: "stratum limitans internum retinae" EXACT OMO:0003011 [FMA:58689, FMA:TA] xref: EMAPA:36519 xref: FMA:58689 xref: MA:0001313 xref: NCIT:C32807 xref: SCTID:280677004 xref: TAO:0001029 xref: UMLS:C1512783 {source="ncithesaurus:Inner_Limiting_Membrane"} xref: Wikipedia:Inner_limiting_membrane xref: XAO:0003222 xref: ZFA:0001029 is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina property_value: IAO:0000116 "TODO - check frog/fish" xsd:string property_value: UBPROP:0000001 "Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf[ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3]." xsd:string {source="ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3"} [Term] id: UBERON:0001795 name: inner plexiform layer of retina namespace: uberon def: "Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)." [NLX:20558] subset: pheno_slim subset: vertebrate_core synonym: "inner plexiform layer" RELATED [BTO:0003175] synonym: "internal plexiform layer of retina" RELATED [NLXANAT:1005032] synonym: "IPL" NARROW OMO:0003000 [] synonym: "retina inner plexiform layer" EXACT [] synonym: "retina, inner plexiform layer" RELATED [BAMS:Ripl] synonym: "retinal inner plexiform layer" EXACT [] synonym: "retinal internal plexiform layer" RELATED [NLXANAT:1005032] synonym: "stratum plexifome internum" RELATED [BTO:0003175] synonym: "stratum plexiforme internum" EXACT [FMA:58704] synonym: "stratum plexiforme internum retinae" RELATED OMO:0003011 [Wikipedia:Inner_plexiform_layer] xref: BAMS:Ripl xref: BTO:0003175 xref: EMAPA:35741 xref: FMA:58704 xref: MA:0001312 xref: NCIT:C32809 xref: NLX:20558 xref: NLXANAT:1005032 xref: SCTID:280682006 xref: TAO:0001329 xref: UMLS:C0229221 {source="ncithesaurus:Inner_Plexiform_Layer"} xref: VHOG:0001168 xref: Wikipedia:Inner_plexiform_layer xref: XAO:0003225 xref: ZFA:0001329 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png" xsd:anyURI property_value: UBPROP:0000001 "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO][GO:0010842]." xsd:string {source="GO:0010842"} property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001329", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001168", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "http://neurolex.org/wiki/Nlx_anat_1005032 appears to be retired" xsd:string [Term] id: UBERON:0001800 name: sensory ganglion namespace: uberon def: "The clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960] subset: human_reference_atlas subset: pheno_slim synonym: "ganglion sensorium" EXACT OMO:0003011 [] xref: AEO:0001000 xref: BTO:0005630 xref: EMAPA:36596 xref: FMA:5885 xref: MA:0002566 xref: MESH:D017950 xref: NCIT:C13060 xref: UMLS:C0206429 {source="ncithesaurus:Sensory_Ganglion"} is_a: UBERON:0000045 ! ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001805 name: autonomic ganglion namespace: uberon def: "Ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion] subset: human_reference_atlas subset: uberon_slim synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion autonomicum" RELATED OMO:0003011 [Wikipedia:Autonomic_ganglion] synonym: "ganglion of autonomic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of visceral nervous system" EXACT [OBOL:automatic] synonym: "visceral nervous system ganglion" EXACT [OBOL:automatic] xref: AEO:0001001 xref: CALOHA:TS-2340 xref: EMAPA:18221 xref: FMA:5889 xref: MA:0000220 xref: MESH:D005725 xref: NCIT:C12720 xref: UMLS:C0017068 {source="ncithesaurus:Autonomic_Ganglion"} xref: Wikipedia:Autonomic_ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001806 name: sympathetic ganglion namespace: uberon def: "A ganglion of the sympathetic nervous system. Examples: paravertebral and the prevertebral ganglia, which include the sympathetic chain ganglia, the superior, middle, and inferior cervical ganglia, and the aorticorenal, celiac, and stellate ganglia." [http://orcid.org/0000-0002-6601-2165, MP:0001008] subset: pheno_slim subset: uberon_slim synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "ganglion sympatheticum" EXACT [] synonym: "ganglion sympathicum" RELATED OMO:0003011 [BTO:0001333, Wikipedia:Sympathetic_ganglion] synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic] synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic] xref: AAO:0010773 xref: BTO:0001333 xref: CALOHA:TS-0994 xref: EHDAA2:0001969 xref: EMAPA:17157 xref: FMA:5890 xref: MA:0000226 xref: MESH:D005728 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12467 xref: SCTID:362485003 xref: UMLS:C0017071 {source="ncithesaurus:Sympathetic_Ganglion"} xref: Wikipedia:Sympathetic_ganglion is_a: UBERON:0001805 ! autonomic ganglion relationship: part_of UBERON:0000013 ! sympathetic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI [Term] id: UBERON:0001807 name: paravertebral ganglion namespace: uberon alt_id: UBERON:0005466 def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "ganglia of sympathetic trunk" RELATED [Wikipedia:Paravertebral_ganglia] synonym: "ganglia trunci sympathici" RELATED OMO:0003011 [Wikipedia:Paravertebral_ganglia] synonym: "ganglion of sympathetic trunk" EXACT [] synonym: "ganglion trunci sympathetici" EXACT OMO:0003011 [] synonym: "ganglion trunci sympathici" EXACT OMO:0003011 [FMA:5891, FMA:TA] synonym: "paravertebral ganglia" RELATED OMO:0003004 [FMA:80128] synonym: "paravertebral ganglion" RELATED [Wikipedia:Paravertebral_ganglia] synonym: "sympathetic chain ganglia" RELATED OMO:0003004 [Wikipedia:Paravertebral_ganglia] synonym: "sympathetic chain ganglion" EXACT [] xref: EHDAA2:0001403 xref: EHDAA:5635 xref: FMA:5891 xref: MA:0003100 xref: SCTID:324478000 xref: TAO:0001556 xref: Wikipedia:Paravertebral_ganglion xref: ZFA:0001556 is_a: UBERON:0001806 ! sympathetic ganglion is_a: UBERON:0007134 {source="ZFA"} ! trunk ganglion relationship: part_of UBERON:0000407 ! sympathetic trunk property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000202 FMA:80128 [Term] id: UBERON:0001808 name: parasympathetic ganglion namespace: uberon def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ganglion parasympathicum" RELATED OMO:0003011 [BTO:0001256, Wikipedia:Parasympathetic_ganglion] xref: BTO:0001256 xref: EHDAA2:0001400 xref: EMAPA:32813 xref: FMA:5894 xref: MA:0002469 xref: MESH:D005726 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C52557 xref: NLXANAT:100303 xref: SCTID:279284004 xref: UMLS:C0017069 {source="ncithesaurus:Parasympathetic_Ganglion"} xref: Wikipedia:Parasympathetic_ganglion is_a: UBERON:0001805 ! autonomic ganglion relationship: part_of UBERON:0000011 ! parasympathetic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001809 name: enteric ganglion namespace: uberon subset: pheno_slim synonym: "intramural ganglion" EXACT [FMA:5896] xref: EMAPA:35312 xref: FMA:5896 xref: MA:0001144 xref: NCIT:C52709 xref: UMLS:C0501399 {source="ncithesaurus:Enteric_Ganglion"} xref: Wikipedia:Enteric_ganglia is_a: UBERON:0001808 {source="FMA"} ! parasympathetic ganglion relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0001810 name: nerve plexus namespace: uberon def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, https://github.com/obophenotype/cell-ontology/issues/1306, Wikipedia:Nervous_system_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "plexus" BROAD [] xref: AEO:0000138 xref: BTO:0000205 xref: EHDAA2:0003138 xref: EHDAA:3780 xref: EMAPA:37683 {source="MA:th"} xref: FMA:5901 xref: MA:0002407 xref: NCIT:C12929 xref: SCTID:122455009 xref: UMLS:C0501403 {source="ncithesaurus:Nerve_Plexus"} xref: Wikipedia:Nervous_system_plexus relationship: part_of UBERON:0001016 ! nervous system property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "Made to be a subtype of junction rather than tissue to be consistent with FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001813 name: spinal nerve plexus namespace: uberon def: "An intermingling of fiber fascicles from adjacent spinal nerves to form a network." [http://www.medilexicon.com/medicaldictionary.php?t=70024] subset: human_reference_atlas synonym: "plexus nervorum spinalium" EXACT OMO:0003011 [FMA:5903, FMA:TA] synonym: "plexus of spinal nerves" EXACT [FMA:5903] synonym: "somatic nerve plexus" EXACT [FMA:5903] synonym: "spinal nerve plexus" EXACT [FMA:5903] xref: EHDAA2:0001899 xref: EMAPA:16987 xref: FMA:5903 xref: MA:0000235 xref: NCIT:C49601 xref: SCTID:42280003 xref: UMLS:C0228603 {source="ncithesaurus:Spinal_Nerve_Plexus"} xref: VHOG:0000925 is_a: UBERON:0001810 ! nerve plexus property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000926", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.436", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001814 name: brachial nerve plexus namespace: uberon def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [UBERON:cjm, Wikipedia:Brachial_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "brachial plexus" EXACT [MA:0001180] synonym: "plexus brachialis" RELATED OMO:0003011 [Wikipedia:Brachial_plexus] xref: EHDAA2:0000180 xref: EHDAA:3782 xref: EMAPA:16988 xref: FMA:5906 xref: GAID:842 xref: MA:0001180 xref: MESH:D001917 xref: NCIT:C12682 xref: SCTID:181002002 xref: UMLS:C0006090 {source="ncithesaurus:Brachial_Plexus"} xref: VHOG:0000372 xref: Wikipedia:Brachial_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001813 ! spinal nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray808.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/c9/Brachial_plexus_color.svg" xsd:anyURI property_value: IAO:0000116 "check superclass - nerve vs collection of fibers vs junction; note that FMA also has 'brachial autonomic nerve plexus'" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A nerve plexus originating from the anterior branches of the last four cervical and the first thoracic spinal nerves, giving off many of the principal nerves of the shoulder, chest, and arms. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000372", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/brachial+plexus"} property_value: UBPROP:0000003 "To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000372", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.436", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001815 name: lumbosacral nerve plexus namespace: uberon def: "An arrangement of nerve fibers, running from the spine that travels to the pelvic appendage where it innervates skin and muscle." [UBERON:cjm] subset: uberon_slim synonym: "lumbosacral plexus" EXACT [] synonym: "plexus lumbosacralis" EXACT OMO:0003011 [FMA:5907, FMA:TA] synonym: "plexus lumbosacralis" RELATED OMO:0003011 [Wikipedia:Lumbosacral_plexus] xref: BAMS:lsp xref: EHDAA2:0001040 xref: EHDAA:4673 xref: EMAPA:17587 xref: FMA:5907 xref: GAID:849 xref: MA:0001181 xref: MESH:D008160 xref: NCIT:C52805 xref: SCTID:181049003 xref: UMLS:C0024093 {source="ncithesaurus:Lumbosacral_Plexus"} xref: VHOG:0000926 xref: Wikipedia:Lumbosacral_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001813 ! spinal nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray822.png" xsd:anyURI [Term] id: UBERON:0001816 name: autonomic nerve plexus namespace: uberon def: "A nerve plexus that is part of an autonomic nervous system [Automatically generated definition]." [OBOL:automatic] synonym: "autonomic plexus" EXACT [] synonym: "plexus autonomicus" EXACT OMO:0003011 [FMA:5910, FMA:TA] synonym: "plexus nervosus visceralis" EXACT OMO:0003011 [FMA:5910, FMA:TA] synonym: "plexus visceralis" EXACT OMO:0003011 [FMA:5910, FMA:TA] synonym: "visceral nerve plexus" EXACT [] synonym: "visceral plexus" EXACT [] xref: EMAPA:18224 xref: FMA:5910 xref: MA:0000221 xref: SCTID:362482000 is_a: UBERON:0001810 ! nerve plexus relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0001853 name: utricle of membranous labyrinth namespace: uberon def: "The larger of the two otolith organs in the vestibule." [ISBN:0-8036-0655-9, MGI:smb, MP:0006090, PMID:15363417, Wikipedia:Utricle_(ear)] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth utricle" EXACT [] synonym: "utricle" EXACT [] synonym: "utriculus" EXACT [ZFA:0000700] synonym: "utriculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000625 xref: AAO:0011109 xref: BTO:0001807 xref: EHDAA2:0002153 xref: EHDAA:4726 xref: EMAPA:17293 xref: EV:0100368 xref: FMA:61113 xref: MA:0000247 xref: NCIT:C33844 xref: SCTID:279817006 xref: TAO:0000700 xref: UMLS:C0042158 {source="ncithesaurus:Utricle"} xref: VHOG:0000289 xref: Wikipedia:Utricle_(ear) xref: XAO:0000195 xref: ZFA:0000700 is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ property_value: UBPROP:0000001 "The portion of the membranous labyrinth of the ear into which the semicircular ducts find their outlet. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001854 name: saccule of membranous labyrinth namespace: uberon def: "The smaller of the two otolith organs in the vestibule." [ISBN:0-8036-0655-9, MGI:smb, MP:0006089, PMID:15363417, Wikipedia:Saccule] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth saccule" EXACT [] synonym: "saccule" EXACT [] synonym: "sacculus" EXACT [ZFA:0000428] synonym: "sacculus" RELATED OMO:0003011 [Wikipedia:Saccule] synonym: "sacculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000550 xref: BTO:0001805 xref: EHDAA2:0001769 xref: EHDAA:4712 xref: EMAPA:17290 xref: EV:0100369 xref: FMA:61116 xref: MA:0000246 xref: NCIT:C33503 xref: SCTID:279827000 xref: TAO:0000428 xref: UMLS:C0036029 {source="ncithesaurus:Saccule"} xref: VHOG:0000374 xref: Wikipedia:Saccule xref: XAO:0000196 xref: ZFA:0000428 is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg" xsd:anyURI property_value: UBPROP:0000001 "The most ventral chamber of the membranous labyrinth. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) .[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001869 name: cerebral hemisphere namespace: uberon def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]." [FMA:61817, Wikipedia:Cerebral_hemisphere] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "cerebrum" RELATED [https://github.com/obophenotype/uberon/issues/1208, MA:0000133, VHOG:0001639] synonym: "hemisphere" RELATED [VHOG:0001639] synonym: "hemispheric regions" RELATED [BAMS:HEM] synonym: "hemispherium cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_hemisphere] synonym: "medial amygdalar nucleus" RELATED [NeuroNames:241] synonym: "nucleus amygdaloideus medialis" RELATED OMO:0003011 [NeuroNames:241] synonym: "nucleus medialis amygdalae" RELATED OMO:0003011 [NeuroNames:241] xref: AAO:0010480 xref: BAMS:HEM xref: BIRNLEX:1042 xref: BTO:0000231 xref: CALOHA:TS-2007 xref: DMBA:15739 xref: EFO:0002521 xref: EMAPA:16653 xref: FMA:61817 xref: galen:CerebralHemisphere xref: MA:0000133 xref: MBA:403 xref: NCIT:C12351 xref: neuronames:241 {source="BIRNLEX:1042"} xref: SCTID:278251007 xref: UMLS:C0228174 {source="ncithesaurus:Cerebral_Hemisphere"} xref: UMLS:C0242202 {source="BIRNLEX:1042"} xref: VHOG:0001639 xref: Wikipedia:Cerebral_hemisphere relationship: part_of UBERON:0001893 ! telencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png" xsd:anyURI property_value: UBPROP:0000001 "Part of the telencephalon consisting of either of the two smooth, elongated halves of the cerebrum.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010480", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "The presence of paired evaginated hemispheres and olfactory bulbs in both agnathan and gnathostome radiations suggests that such hemispheres were also present in the common ancestor.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001639", ontology="VHOG", source="DOI:10.1146/annurev.ne.04.030181.001505 Northcutt RG, Evolution of the telencephalon in nonmammals. Ann. Rev. Neurosci. (1981)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001870 name: frontal cortex namespace: uberon def: "Anterior portion of the neocortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally[NIFSTD,modified]." [NLXANAT:20090601] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cortex of frontal lobe" EXACT [FMA:242199] synonym: "frontal lobe cortex" EXACT [FMA:242199] synonym: "frontal neocortex" RELATED [DHBA:10161] synonym: "gray matter of frontal lobe" EXACT [FMA:242199] synonym: "grey matter of frontal lobe" EXACT [] xref: BTO:0000484 xref: DHBA:10161 xref: DMBA:16002 xref: EMAPA:35357 xref: FMA:242199 xref: GAID:674 xref: MA:0000905 xref: MESH:D005625 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLXANAT:20090601 xref: Wikipedia:Frontal_lobe is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0016525 ! frontal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray729.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Anterior portion of the frontal cortex, lying anterior to the central sulcus. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally." xsd:string {source="NLXANAT:20090601"} [Term] id: UBERON:0001871 name: temporal lobe namespace: uberon def: "Lower lateral part of the cerebral hemisphere. (MSH)." [BIRNLEX:1160] comment: Boundary notes: It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [Wikipedia:Temporal_lobe] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "lobus temporalis" EXACT OMO:0003011 [Wikipedia:Temporal_lobe] synonym: "temporal cortex" NARROW [] xref: BAMS:Temporal_lobe xref: BAMS:TL xref: BIRNLEX:1160 xref: BTO:0001355 xref: CALOHA:TS-1020 xref: DHBA:12139 xref: EFO:0000917 xref: EMAPA:18797 xref: EV:0100169 xref: FMA:61825 xref: GAID:635 xref: HBA:4132 xref: MAT:0000508 xref: MESH:D013702 xref: NCIT:C12353 xref: neuronames:125 {source="BIRNLEX:1160"} xref: SCTID:180921000 xref: UMLS:C0039485 {source="BIRNLEX:1160", source="ncithesaurus:Temporal_Lobe"} xref: UMLS:C1268978 {source="BIRNLEX:1160"} xref: Wikipedia:Temporal_lobe is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001872 name: parietal lobe namespace: uberon def: "Upper central part of the cerebral hemisphere. (MSH)." [BIRNLEX:1148] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "lobus parietalis" RELATED OMO:0003011 [Wikipedia:Parietal_lobe] synonym: "parietal region" BROAD [] synonym: "regio parietalis" EXACT OMO:0003011 [FMA:61826, FMA:TA] xref: BAMS:Parietal_lobe xref: BIRNLEX:1148 xref: BTO:0001001 xref: CALOHA:TS-0747 xref: DHBA:12131 xref: EFO:0000914 xref: EV:0100168 xref: FMA:61826 xref: GAID:680 xref: HBA:4084 xref: MAT:0000506 xref: MESH:D010296 xref: NCIT:C12354 xref: neuronames:95 {source="BIRNLEX:1148"} xref: SCTID:180922007 xref: UMLS:C0030560 {source="BIRNLEX:1148", source="ncithesaurus:Parietal_Lobe_of_the_Brain"} xref: Wikipedia:Parietal_lobe is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001873 name: caudate nucleus namespace: uberon alt_id: UBERON:0010122 def: "Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species." [BIRNLEX:1373] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Ammon horn fields" RELATED [BAMS:CA] synonym: "caudatum" RELATED [BTO:0000211] synonym: "caudatus" EXACT [] synonym: "nucleus caudatus" RELATED OMO:0003011 [BTO:0000211, Wikipedia:Caudate_nucleus] xref: BAMS:CA xref: BAMS:Cd xref: BIRNLEX:1373 xref: BM:Tel-CA xref: BTO:0000211 xref: CALOHA:TS-0121 xref: DHBA:10334 xref: DMBA:15855 xref: EFO:0000907 xref: EHDAA2:0004461 xref: EMAPA:18207 xref: EV:0100185 xref: FMA:61833 xref: GAID:670 xref: HBA:4278 xref: MA:0000894 xref: MAT:0000513 xref: MESH:D002421 xref: NCIT:C12451 xref: neuronames:226 {source="BIRNLEX:1373"} xref: PBA:10082 xref: SCTID:279297002 xref: UMLS:C0007461 {source="ncithesaurus:Caudate_Nucleus", source="BIRNLEX:1373"} xref: Wikipedia:Caudate_nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000369 {is_redundant="true", source="EHDAA2", source="ncithesaurus"} ! corpus striatum relationship: part_of UBERON:0002435 {is_redundant="true", source="NIFSTD"} ! striatum relationship: part_of UBERON:0005382 {is_redundant="true", source="NIFSTD"} ! dorsal striatum relationship: part_of UBERON:0005383 {source="MA"} ! caudate-putamen property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent[FMA:61833]." xsd:string {source="FMA:61833"} [Term] id: UBERON:0001874 name: putamen namespace: uberon def: "Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion." [BIRNLEX:809] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus putamen" EXACT [] xref: BAMS:PU xref: BAMS:Pu xref: BIRNLEX:809 xref: BM:Tel-Pu xref: CALOHA:TS-2041 xref: DHBA:10338 xref: DMBA:15857 xref: EMAPA:35719 xref: EV:0100187 xref: FMA:61834 xref: GAID:671 xref: HBA:4287 xref: MA:0000895 xref: MESH:D011699 xref: NCIT:C12452 xref: neuronames:230 {source="BIRNLEX:809"} xref: PBA:10086 xref: SCTID:281512002 xref: UMLS:C0034169 {source="ncithesaurus:Putamen"} xref: VHOG:0001456 xref: Wikipedia:Putamen is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum relationship: part_of UBERON:0005383 ! caudate-putamen property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg" xsd:anyURI property_value: IAO:0000116 "check - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease[Wikipedia:Putamen]." xsd:string {source="Wikipedia:Putamen"} property_value: UBPROP:0000003 "All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001456", ontology="VHOG", source="DOI:10.1016/j.cub.2011.05.001 Stephenson-Jones M, Samuelsson E, Ericsson J, Robertson B, Grillner S, Evolutionary conservation of the basal ganglia as a common vertebrate mechanism for action selection. Current Biology (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001875 name: globus pallidus namespace: uberon def: "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle." [BIRNLEX:1234] comment: BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "globus pallidus (Burdach)" RELATED [NeuroNames:231] synonym: "nucleus pallidus" RELATED OMO:0003011 [NeuroNames:231] synonym: "pale body" EXACT [BIRNLEX:1234] synonym: "paleostriatum" EXACT [Wikipedia:Globus_pallidus] synonym: "pallidium" RELATED [Wikipedia:Globus_pallidus] synonym: "pallidum" RELATED [BIRNLEX:1234, GO:0021759, Wikipedia:Globus_pallidus] xref: BAMS:GP xref: BIRNLEX:1234 xref: BTO:0002246 xref: CALOHA:TS-2013 xref: DHBA:10342 xref: EFO:0000905 xref: EMAPA:35380 xref: EV:0100188 xref: FMA:61835 xref: GAID:668 xref: HBA:4293 xref: MA:0000890 xref: MAT:0000510 xref: MESH:D005917 xref: NCIT:C12449 xref: neuronames:231 {source="BIRNLEX:1234"} xref: PBA:10097 xref: SCTID:362361005 xref: UMLS:C0017651 {source="BIRNLEX:1234", source="ncithesaurus:Globus_Pallidus"} xref: Wikipedia:Globus_pallidus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 {source="NIFSTD"} ! basal ganglion relationship: part_of UBERON:0006514 {source="MA"} ! pallidum property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif" xsd:anyURI property_value: UBPROP:0000001 "Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA][FMA:61835]." xsd:string {source="FMA:61835"} property_value: UBPROP:0000007 "pallidal" xsd:string [Term] id: UBERON:0001876 name: amygdala namespace: uberon def: "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM)." [BIRNLEX:1241] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "amygdaloid area" RELATED [] synonym: "amygdaloid body" EXACT [] synonym: "amygdaloid complex" EXACT [BIRNLEX:1241] synonym: "amygdaloid nuclear complex" EXACT [] synonym: "amygdaloid nuclear group" RELATED [BTO:0001042] synonym: "amygdaloid nuclear groups" EXACT [] synonym: "amygdaloid nucleus" RELATED [FMA:61841] synonym: "archistriatum" EXACT [] synonym: "corpus amygdalae" RELATED OMO:0003011 [NeuroNames:237] synonym: "corpus amygdaloideum" RELATED OMO:0003011 [BTO:0001042, Wikipedia:Amygdala] synonym: "nucleus amygdalae" RELATED [BTO:0001042] xref: BAMS:Amg xref: BAMS:AMY xref: BAMS:Amy xref: BAMS:Amygdala xref: BAMS:Amygdaloid_complex xref: BIRNLEX:1241 xref: BM:Tel-Am xref: BTO:0001042 xref: CALOHA:TS-0037 xref: DHBA:10361 xref: EFO:0000252 xref: EMAPA:32672 xref: EMAPA:36051 xref: EV:0100189 xref: EV:0100190 xref: FMA:61841 xref: GAID:616 xref: HBA:4327 xref: MA:0000887 xref: MAT:0000289 xref: MESH:D000679 xref: MIAA:0000289 xref: NCIT:C12440 xref: neuronames:237 {source="BIRNLEX:1241"} xref: PBA:4002 xref: SCTID:279404004 xref: UMLS:C0002708 {source="BIRNLEX:1241", source="ncithesaurus:Amygdala"} xref: VHOG:0001277 xref: Wikipedia:Amygdala is_a: UBERON:0002420 {source="FMA"} ! basal ganglion is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0001871 {source="BTO"} ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA:61841]" xsd:string {source="FMA:61841"} property_value: UBPROP:0000003 "One part of the striatum is called the archistriatum. (...) The archistriatum of fishes consists of several indistinctly segregated nuclei called the amygdaloid (...) complex. Tetrapods retain the structure, and in mammals the corresponding amygdala is a globular mass that tends to be ventral to the other basal nuclei.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001277", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.342", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "amygdalar" xsd:string property_value: UBPROP:0000012 "MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001877 name: medial septal nucleus namespace: uberon def: "Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981)." [BIRNLEX:1668, https://github.com/obophenotype/uberon/issues/1356] synonym: "medial parolfactory nucleus" EXACT [FMA:61879] synonym: "medial septal nucleus (Cajal)" RELATED [NeuroNames:262] synonym: "medial septum" NARROW [BIRNLEX:1668] synonym: "medial septum nucleus" RELATED [NeuroNames:262] synonym: "n. septi medialis" RELATED OMO:0003011 [NeuroNames:262] synonym: "nucleus medialis septi" RELATED OMO:0003011 [NeuroNames:262] synonym: "nucleus septalis medialis" RELATED [BTO:0002446] xref: BAMS:MS xref: BAMS:SMN xref: BIRNLEX:1668 xref: BM:Tel-Spt-SMN xref: BTO:0002446 xref: DHBA:10351 xref: DMBA:15764 xref: EMAPA:35553 xref: FMA:61879 xref: HBA:4302 xref: MA:0000935 xref: MBA:564 xref: neuronames:262 {source="BIRNLEX:1668"} xref: UMLS:C0175233 {source="BIRNLEX:1668"} xref: Wikipedia:Medial_septal_nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007629 ! medial septal complex property_value: UBPROP:0000001 "A nucleus in the septal area, coextensive with the diagonal band of Broca; it has afferent and cholinergic efferent connections with a variety of forebrain and brain stem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdaloid bodies." xsd:string {source="BTO:0002446"} property_value: UBPROP:0000001 "The medial septal nucleus is one of the septal nuclei. It plays a role in the generation of theta waves[Wikipedia:Medial_septal_nucleus]." xsd:string {source="Wikipedia:Medial_septal_nucleus"} [Term] id: UBERON:0001878 name: septofimbrial nucleus namespace: uberon synonym: "nucleus septalis fimbrialis" RELATED OMO:0003011 [NeuroNames:264] synonym: "nucleus septofibrialis" EXACT [BIRNLEX:730] synonym: "nucleus septofimbrialis" RELATED [NeuroNames:264] synonym: "scattered nucleus of the septum" EXACT [] xref: BAMS:SF xref: BAMS:SFi xref: BAMS:SFN xref: BIRNLEX:730 xref: BM:SFN xref: DHBA:13032 xref: DMBA:15780 xref: EMAPA:35767 xref: FMA:61881 xref: MA:0000938 xref: MBA:310 xref: neuronames:264 {source="BIRNLEX:730"} xref: UMLS:C0694603 {source="BIRNLEX:730"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex property_value: RO:0002171 UBERON:0002667 {source="ABA"} property_value: RO:0002171 UBERON:0007630 {source="ABA"} [Term] id: UBERON:0001879 name: nucleus of diagonal band namespace: uberon def: "A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala." [ncithesaurus:Nucleus_of_Diagonal_Band] synonym: "area olfactoria (Roberts)" RELATED OMO:0003011 [NeuroNames:265] synonym: "diagonal band nucleus" EXACT [] synonym: "diagonal nucleus" RELATED [NeuroNames:265] synonym: "nuclei of horizontal and vertical limbs of diagonal band" RELATED [NeuroNames:265] synonym: "nucleus fasciculi diagonalis Brocae" RELATED OMO:0003011 [NeuroNames:265] synonym: "nucleus of diagonal band (of Broca)" EXACT [] synonym: "nucleus of the diagonal band" RELATED [NeuroNames:265] synonym: "nucleus of the diagonal band of Broca" EXACT [] synonym: "olfactory area (roberts)" EXACT [] xref: BAMS:DB xref: BAMS:NDB xref: BIRNLEX:719 xref: DHBA:10354 xref: EHDAA2:0004708 xref: EMAPA:35598 xref: FMA:61882 xref: HBA:4309 xref: MA:0000936 xref: MBA:596 xref: NCIT:C97342 xref: neuronames:265 {source="BIRNLEX:719"} xref: UMLS:C0175227 {source="BIRNLEX:719", source="ncithesaurus:Nucleus_of_Diagonal_Band"} xref: Wikipedia:Nucleus_of_diagonal_band is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="FMA"} ! septal nuclear complex relationship: part_of UBERON:0007629 {source="MA"} ! medial septal complex [Term] id: UBERON:0001880 name: bed nucleus of stria terminalis namespace: uberon def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010, Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis] subset: efo_slim subset: human_reference_atlas synonym: "bed nuclei of the stria terminalis" EXACT OMO:0003004 [ABA:BST] synonym: "bed nuclei of the stria terminalis" RELATED [BAMS:BST] synonym: "bed nucleus of the stria terminalis" EXACT [BIRNLEX:724] synonym: "bed nucleus stria terminalis (Johnson)" EXACT [BIRNLEX:724] synonym: "bed nucleus striae terminalis" EXACT [XAO:0004541] synonym: "BST" BROAD OMO:0003000 [INCF:Seattle_mtg_2010] synonym: "intercalate nucleus of stria terminalis" EXACT [] synonym: "interstitial nucleus of stria terminalis" EXACT [BIRNLEX:724] synonym: "nuclei of stria terminalis" EXACT [] synonym: "nucleus interstitialis striae terminalis" RELATED OMO:0003011 [NeuroNames:267] synonym: "nucleus of stria terminalis" EXACT [FMA:61884] synonym: "nucleus of the stria terminalis" RELATED [NeuroNames:267] synonym: "nucleus proprius stria terminalis (bed nucleus)" RELATED [BAMS:BST] synonym: "nucleus striae terminalis" EXACT OMO:0003011 [FMA:61884, FMA:TA] synonym: "stria terminalis nucleus" EXACT [] xref: BAMS:Bed.n.term. xref: BAMS:BST xref: BAMS:bst xref: BAMS:ST xref: BAMS:stb xref: BAMS:StT xref: BIRNLEX:724 xref: BM:BNST xref: BTO:0002698 xref: DHBA:10384 xref: EFO:0001971 xref: EMAPA:35169 xref: FMA:61884 xref: HBA:4313 xref: MA:0000925 xref: MBA:351 xref: neuronames:267 {source="BIRNLEX:724"} xref: UMLS:C0228365 {source="BIRNLEX:724"} xref: Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis xref: XAO:0004541 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="EMAPA", source="FMA"} ! septal nuclear complex relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001881 name: island of Calleja namespace: uberon def: "One of the seven small groups of granule cells in the polymorph layer of the olfactory tubercle and one large group, the insula magna, which lies along the border between septum, nucleus accumbens and nucleus of the diagonal band." [MP:0010010, PMID:80412] subset: pheno_slim subset: uberon_slim synonym: "Calleja island" EXACT [] synonym: "insula callejae" RELATED OMO:0003011 [Wikipedia:Islands_of_Calleja] synonym: "insulae olfactoriae" RELATED OMO:0003011 [Wikipedia:Islands_of_Calleja] synonym: "islands of Calleja" EXACT [] synonym: "islands of Calleja (olfactory tubercle)" RELATED [NeuroNames:276] xref: BAMS:ICj xref: BAMS:IClj xref: BAMS:ISC xref: BAMS:isl xref: BIRNLEX:1113 xref: BM:Tel-ISC xref: DHBA:10358 xref: EMAPA:35452 xref: FMA:61888 xref: GAID:632 xref: HBA:265504792 xref: MA:0000977 xref: MBA:481 xref: MESH:D020670 xref: neuronames:276 {source="BIRNLEX:1113"} xref: PBA:10095 xref: UMLS:C0262264 {source="BIRNLEX:1113"} xref: Wikipedia:Islands_of_Calleja is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Islands_of_Calleja_Rat.jpg" xsd:anyURI property_value: UBPROP:0000008 "The islands of Calleja are located within the olfactory tubercle in most species; however, in primates these islands are located within the nucleus accumbens, since the olfactory tubercle is absent or extremely rudimentary in the brains of primates" xsd:string {source="MP:0010010"} [Term] id: UBERON:0001882 name: nucleus accumbens namespace: uberon def: "A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the neostriatum (caudate nucleus and putamen), the nucleus accumbens forms the striatum." [BIRNLEX:727] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "accumbens nucleus" EXACT [FMA:61889] synonym: "colliculus nuclei caudati" RELATED OMO:0003011 [NeuroNames:277] synonym: "colliculus of caudate nucleus" EXACT [FMA:61889] synonym: "nucleus accumbens septi" EXACT [FMA:61889, Wikipedia:Nucleus_accumbens] xref: BAMS:ACB xref: BAMS:Acb xref: BAMS:ACC xref: BIRNLEX:727 xref: BM:Ac xref: BTO:0001862 xref: DHBA:10339 xref: EFO:0000906 xref: EHDAA2:0004707 xref: EMAPA:32789 xref: FMA:61889 xref: GAID:672 xref: HBA:4290 xref: MA:0000892 xref: MAT:0000512 xref: MBA:56 xref: MESH:D009714 xref: NCIT:C52733 xref: neuronames:277 {source="BIRNLEX:727"} xref: PBA:10092 xref: SCTID:427667007 xref: UMLS:C0028633 {source="ncithesaurus:Accumbens_Nucleus"} xref: Wikipedia:Nucleus_accumbens is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000349 {source="FMA", source="GO"} ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0005403 {source="MA"} ! ventral striatum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0001883 {source="ABA"} property_value: RO:0002175 NCBITaxon:8782 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO][GO:0021768]." xsd:string {source="GO:0021768"} property_value: UBPROP:0000008 "The ventral striatopallidal complex in birds corresponds closely to its counterpart in mammals, with a nucleus accumbes present in the rostral telenceaphalon. Note that in birds, a region previously called the nucleus accumbens is now recognized as the lateral part of the bed nucleus of stria terminalis.[ISBN:0471888893]" xsd:string [Term] id: UBERON:0001883 name: olfactory tubercle namespace: uberon def: "Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone)." [NLXANAT:1005037] subset: pheno_slim subset: uberon_slim synonym: "tuberculum olfactorium" EXACT OMO:0003011 [] xref: BAMS:DLT xref: BAMS:OLT xref: BAMS:OT xref: BAMS:Tu xref: BM:Tel-OLT xref: BTO:0001869 xref: DHBA:10310 xref: EHDAA2:0004701 xref: EMAPA:35616 xref: EV:0100177 xref: HBA:10145 xref: MA:0000976 xref: MBA:754 xref: MESH:D066208 xref: NLXANAT:1005037 xref: PBA:10096 xref: VHOG:0001625 xref: Wikipedia:Olfactory_tubercle is_a: UBERON:0000125 {source="EHDAA2"} ! neural nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002894 {source="EHDAA2-inferred", source="MA", source="VHOG", source="Wikipedia"} ! olfactory cortex relationship: part_of UBERON:0005401 {source="BTO"} ! cerebral hemisphere gray matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI property_value: RO:0002171 UBERON:0001882 {source="ABA"} property_value: RO:0002174 NCBITaxon:9443 {source="MP", comment="EDITOR_NOTE check EHDAA2"} property_value: UBPROP:0000001 "The olfactory tubercle is a structure involved in Olfaction. It is present in humans, but much smaller than it is in some other animals. It is a frequent subject of research." xsd:string {source="Wikipedia:Olfactory_tubercle"} property_value: UBPROP:0000008 "Absent in primates" xsd:string {source="MP"} [Term] id: UBERON:0001884 name: phrenic nerve namespace: uberon def: "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium." [VHOG:0000728] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "diaphragmatic nerve" RELATED [BTO:0001063] synonym: "nervus phrenicus" RELATED OMO:0003011 [BTO:0001063, Wikipedia:Phrenic_nerve] synonym: "phrenic" RELATED [BTO:0001063] xref: BAMS:phn xref: BTO:0001063 xref: EHDAA:4677 xref: EMAPA:17813 xref: FMA:6191 xref: GAID:848 xref: MA:0001170 xref: MESH:D010791 xref: NCIT:C52813 xref: SCTID:280344009 xref: UMLS:C0031774 {source="ncithesaurus:Phrenic_Nerve"} xref: VHOG:0000728 xref: Wikipedia:Phrenic_nerve is_a: UBERON:0003443 ! thoracic cavity nerve relationship: part_of UBERON:0000962 ! nerve of cervical vertebra property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray806.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000728", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/phrenic+nerve"} [Term] id: UBERON:0001885 name: dentate gyrus of hippocampal formation namespace: uberon def: "Part of the hippocampal formation forming a 'V' or 'U' shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer." [BIRNLEX:1178] comment: BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "area dentata" EXACT [] synonym: "dentate area" RELATED [DHBA:10295] synonym: "dentate area (dentate gyrus)" EXACT [DHBA:10295] synonym: "dentate gyrus" EXACT [] synonym: "fascia dentata" NARROW [] synonym: "gyrus dentatus" RELATED OMO:0003011 [BTO:0002496, Wikipedia:Dentate_gyrus] synonym: "hippocampal dentate gyrus" RELATED [BTO:0002496] xref: BAMS:DG xref: BIRNLEX:1178 xref: BM:Tel-DG xref: BTO:0002496 xref: BTO:0002615 xref: CALOHA:TS-2388 xref: DHBA:10295 xref: DMBA:16115 xref: EFO:0001366 xref: EMAPA:19037 xref: FMA:61922 xref: GAID:624 xref: HBA:12891 xref: MA:0000190 xref: MBA:726 xref: MESH:D018891 xref: NCIT:C32452 xref: neuronames:179 xref: SCTID:279211002 xref: UMLS:C0152314 {source="ncithesaurus:Dentate_Gyrus"} xref: Wikipedia:Dentate_gyrus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0001954 {source="ABA"} property_value: RO:0002171 UBERON:0002601 {source="ABA"} property_value: UBPROP:0000001 "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO][GO:0021542]." xsd:string {source="GO:0021542"} [Term] id: UBERON:0001886 name: choroid plexus namespace: uberon def: "A network formed by blood vessels and the tela choroidea which secretes CSF into the ventricular spaces." [ISBN:0471888893, Wikipedia:Choroid_plexus] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chorioid plexus" EXACT [FMA:61934] synonym: "choroid plexus of cerebral hemisphere" RELATED [FMA:61934] synonym: "CP" BROAD OMO:0003000 [PMID:23375746] synonym: "plexus choroideus" EXACT OMO:0003011 [FMA:61934, FMA:TA] synonym: "plexus choroideus" RELATED OMO:0003011 [Wikipedia:Choroid_plexus] synonym: "ventricular choroid plexus" RELATED [] xref: BAMS:CHP xref: BAMS:chp xref: BAMS:chpl xref: BAMS:GHP xref: BTO:0000258 xref: CALOHA:TS-0145 xref: EFO:0001915 xref: EMAPA:32741 xref: FMA:61934 xref: GAID:607 xref: MA:0000823 xref: MBA:108 xref: MESH:D002831 xref: NCIT:C12694 xref: neuronames:1377 xref: SCTID:264450003 xref: TAO:0001443 xref: UMLS:C0008524 {source="ncithesaurus:Choroid_Plexus"} xref: VHOG:0001377 xref: Wikipedia:Choroid_plexus xref: ZFA:0001443 is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0036303 ! vasculature of central nervous system relationship: part_of UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0005283 ! tela choroidea property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg" xsd:anyURI property_value: IAO:0000116 "TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerebral hemisphere" xsd:string property_value: UBPROP:0000001 "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001443", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Fringe of the tela choroidea of the brain ventricles[MP]" xsd:string {source="MP:0000820"} property_value: UBPROP:0000007 "choroidal" xsd:string [Term] id: UBERON:0001887 name: internal capsule of telencephalon namespace: uberon def: "White matter regional part of brain which is flanked by nuclear masses, consisting of both afferent and efferent fibers projecting between the cerebral cortex and the brainstem and spinal cord. It consists of three distinct parts: an anterior limb, posterior limb, and genu. (Adapted from MSH by Maryann Martone)." [BIRNLEX:1659] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brain internal capsule" EXACT [MP:0008128] synonym: "capsula interna" RELATED OMO:0003011 [Wikipedia:Internal_capsule] synonym: "internal capsule" BROAD [MA:0002748] synonym: "internal capsule radiations" EXACT [] xref: BAMS:ic xref: BAMS:int xref: BIRNLEX:1659 xref: BM:IC xref: DHBA:10581 xref: DMBA:17770 xref: EMAPA:18206 xref: EMAPA:35437 xref: FMA:61950 xref: GAID:685 xref: HBA:9263 xref: MA:0002748 xref: MBA:6 xref: MESH:D020772 xref: NCIT:C13082 xref: PBA:10102 xref: SCTID:85637007 xref: UMLS:C0152341 {source="BIRNLEX:1659", source="ncithesaurus:Internal_Capsule"} xref: Wikipedia:Internal_capsule is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001888 name: lateral olfactory stria namespace: uberon def: "White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone)." [BIRNLEX:1559] subset: uberon_slim subset: vertebrate_core synonym: "lateral olfactory stria" RELATED [FMA:61971, NeuroNames:284] synonym: "lateral olfactory tract" RELATED [NeuroNames:284] synonym: "lateral olfactory tract, body" RELATED [NeuroNames:284] synonym: "lateral olfactory tract. body" RELATED [BAMS:lot] synonym: "LOT" RELATED OMO:0003000 [] synonym: "olfactory tract" RELATED [NeuroNames:284] synonym: "stria olfactoria lateralis" RELATED OMO:0003011 [NeuroNames:284, Wikipedia:Lateral_olfactory_stria] synonym: "tractus olfactorius lateralis" EXACT OMO:0003011 [ZFA:0000229] synonym: "tractus olfactorius lateralis" RELATED OMO:0003011 [NeuroNames:284] xref: BAMS:LDTR xref: BAMS:lo xref: BAMS:lot xref: BAMS:LOTR xref: BIRNLEX:1559 xref: BM:Tel-LOT xref: DHBA:12075 xref: DMBA:17773 xref: EV:0100175 xref: FMA:61971 xref: HBA:265505514 xref: MBA:665 xref: neuronames:284 {source="BIRNLEX:1559"} xref: SCTID:369107001 xref: UMLS:C0152330 {source="BIRNLEX:1559"} xref: Wikipedia:Lateral_olfactory_stria is_a: UBERON:0034730 ! olfactory tract linking bulb to ipsilateral dorsal telencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI property_value: UBPROP:0000008 "In mammals the fibers of the dorsal lateral olfactory tract either pass under the accessory olfactory formation, or they penetrate through it separating the internal granule cells from the output cells." xsd:string {source="PMID:7437895"} [Term] id: UBERON:0001889 name: trunk of phrenic nerve namespace: uberon synonym: "phrenic nerve trunk" EXACT [] synonym: "phrenic neural trunk" EXACT [] xref: EHDAA2:0001463 xref: EMAPA:37718 {source="MA:th"} xref: FMA:6198 xref: MA:0001177 is_a: UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0001884 ! phrenic nerve [Term] id: UBERON:0001890 name: forebrain namespace: uberon def: "The most anterior region of the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "FB" BROAD OMO:0003000 [BIRNLEX:1509, NIFSTD:NeuroNames_abbrevSource] synonym: "prosencephalon" RELATED [] xref: AAO:0010147 xref: BAMS:FB xref: BAMS:Forebrain xref: BIRNLEX:1509 xref: BTO:0000478 xref: CALOHA:TS-0380 xref: DHBA:10156 xref: DMBA:15566 xref: EFO:0000909 xref: EHDAA2:0000556 xref: EHDAA:3470 xref: EMAPA:16895 xref: FMA:61992 xref: MA:0000170 xref: MAT:0000105 xref: MESH:D016548 xref: MIAA:0000105 xref: NCIT:C40185 xref: neuronames:27 {source="BIRNLEX:1509"} xref: SCTID:362291003 xref: TAO:0000109 xref: UMLS:C0085140 {source="ncithesaurus:Fore-Brain", source="BIRNLEX:1509"} xref: VHOG:0000383 xref: Wikipedia:Forebrain xref: XAO:0000011 xref: ZFA:0000109 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010147", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000109", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000109", ontology="TAO"} property_value: UBPROP:0000003 "In craniate embryos, neural expression of Distal-less-related genes is exclusively in the forebrain (...). Because the major neural expression domain of amphioxus AmphiDll is in the anterior three-fourths of the cerebral vesicle, we suggest that this region of the neural tube is homologous to parts of the craniate forebrain. This conclusion is strongly supported by three-dimensional, computer-assisted reconstruction of the neural tube of amphioxus based on serial transmission electron microscopy. At the neuroanatomical level, a number of detailed homologies are indicated between the anterior three-fourths of the amphioxus cerebral vesicle and the diencephalic region of the craniate forebrain. If one assumes that the amphioxus condition fairly represents the nervous system of the proximate ancestor of the craniates, one can suggest that they evolved from a creature that had the beginnings of a forebrain.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000383", ontology="VHOG", source="PMID:8787764 Holland ND, Panganiban G, Henyey EL, Holland LZ, Sequence and developmental expression of AmphiDll, an amphioxus Distal-less gene transcribed in the ectoderm, epidermis and nervous system: insights into evolution of craniate forebrain and neural crest. Development (1996)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "prosencephalic" xsd:string [Term] id: UBERON:0001891 name: midbrain namespace: uberon def: "The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [GO:0030901] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "MB" BROAD OMO:0003000 [BIRNLEX:1667, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalon" RELATED OMO:0003011 [Wikipedia:Midbrain] xref: AAO:0010149 xref: BAMS:MES xref: BIRNLEX:1667 xref: BM:MB xref: BTO:0000138 xref: CALOHA:TS-0630 xref: DHBA:10648 xref: DMBA:16649 xref: EFO:0000919 xref: EHDAA2:0001162 xref: EHDAA:3694 xref: EMAPA:16974 xref: EV:0100242 xref: FMA:61993 xref: HBA:9001 xref: MA:0000207 xref: MAT:0000106 xref: MBA:313 xref: MESH:D008636 xref: MIAA:0000106 xref: NCIT:C12510 xref: neuronames:462 {source="BIRNLEX:1667"} xref: RETIRED_EHDAA2:0001104 xref: SCTID:279099009 xref: TAO:0000128 xref: UMLS:C0025462 {source="BIRNLEX:1667", source="ncithesaurus:Mesencephalon"} xref: VHOG:0000069 xref: Wikipedia:Midbrain xref: XAO:0000014 xref: ZFA:0000128 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG" xsd:anyURI property_value: IAO:0000116 "developmental relationships need revised" xsd:string property_value: RO:0002171 UBERON:0001894 {exceptions="ZFA", exceptions_url="https://github.com/obophenotype/uberon/issues/378", source="ABA", status="pending"} property_value: RO:0002171 UBERON:0002028 {exceptions="ZFA", source="ABA", status="pending"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Middle part of the brain composed of the optic tectum and penducular region.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010149", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000128", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000069", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "mesencephalic" xsd:string property_value: UBPROP:0000012 "part of brainstem in ABA - we reject this in favor of ISBN:0471888893 which has an implicit overlaps relationships" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0001892 name: rhombomere namespace: uberon def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure.[WP]." [Wikipedia:Rhombomere, ZFIN:curator] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "future rhombencephalon" RELATED [MIAA:0000272] synonym: "hindbrain neuromere" EXACT [] synonym: "hindbrain neuromeres" EXACT OMO:0003004 [DHBA:HNM] synonym: "hindbrain segment" BROAD [ZFA:0001064] synonym: "rhombomere" EXACT [] synonym: "rhombomeres" RELATED OMO:0003004 [VHOG:0000672] synonym: "segment of hindbrain" BROAD [ZFA:0001064] xref: DHBA:12664 xref: EFO:0003617 xref: EMAPA:16148 xref: FMA:295666 xref: MAT:0000272 xref: MIAA:0000272 xref: RETIRED_EHDAA2:0000669 xref: TAO:0001064 xref: VHOG:0000672 xref: Wikipedia:Rhombomere xref: XAO:0004079 xref: ZFA:0001064 is_a: UBERON:0004731 ! neuromere property_value: UBPROP:0000001 "A segment of the developing hindbrain. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001064", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "Rhombomeric segmentation is found in all living vertebrates and is of fundamental importance to the development of the vertebrate head.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000672", ontology="VHOG", source="DOI:10.1006/dbio.2002.0831 Mazet F, Shimeld SM, The Evolution of Chordate Neural Segmentation. Developmental Biology (2002)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "In human embryonic development, the rhombomeres are present by day 29" xsd:string property_value: UBPROP:0000012 "DHBA divides this into A(1-3),B(4),C(5-7) and D(8)" xsd:string [Term] id: UBERON:0001893 name: telencephalon namespace: uberon def: "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres." [AAO:0010479, XAO:0000012] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebrum" EXACT [BTO:0000239, EMAPA:16910, FMA:62000, https://github.com/obophenotype/uberon/issues/1208, Wikipedia:Talk\:Cerebrum/Archive_1] synonym: "endbrain" EXACT [neuronames:31, Swanson:2004] synonym: "supratentorial region" BROAD [Wikipedia:Tentorium_cerebelli] xref: AAO:0010479 xref: BAMS:CB xref: BAMS:CH xref: BAMS:IV xref: BAMS:Tel xref: BIRNLEX:1115 xref: BM:Tel xref: BTO:0000239 xref: CALOHA:TS-1018 xref: DHBA:10158 xref: EFO:0000912 xref: EHDAA2:0001982 xref: EMAPA:16910 xref: EV:0100165 xref: FMA:62000 xref: GAID:621 xref: HBA:4007 xref: MA:0000183 xref: MAT:0000421 xref: MBA:567 xref: MESH:D013687 xref: MIAA:0000421 xref: neuronames:31 {source="BIRNLEX:1115"} xref: PBA:128011350 xref: SCTID:263353005 xref: TAO:0000079 xref: UMLS:C0039452 {source="BIRNLEX:1115"} xref: VHOG:0000283 xref: Wikipedia:Telencephalon xref: XAO:0000012 xref: ZFA:0000079 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001890 ! forebrain property_value: RO:0002171 UBERON:0002037 {source="ABA"} property_value: UBPROP:0000001 "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA:62000]." xsd:string {source="FMA:62000"} property_value: UBPROP:0000001 "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010479", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000079", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from presumptive telencephalon (TAO:0000571)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000079", ontology="TAO"} property_value: UBPROP:0000003 "From an evolutionary standpoint, the telencephalon is the most recent brain structure: the amphioxus does not have this structure as a morphological entity. Overt telencephalon is present in the hagfish and lamprey to receive numerous input fibers from various parts of the CNS, similar to gnathostomes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000283", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.008 Murakami Y, Uchida K, Rijli FM and Kuratani S, Evolution of the brain developmental plan: Insights from agnathans. Developmental Biology (2005)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "cerebral" xsd:string property_value: UBPROP:0000007 "telencephalic" xsd:string property_value: UBPROP:0000007 "telenencephalic" xsd:string property_value: UBPROP:0000008 "dolphins are the only species (other than humans) to have cerebra accounting for as much as 2 percent of their body weight." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: UBPROP:0000008 "In mammals the cortex covers almost the whole of the cerebral hemispheres." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: UBPROP:0000008 "In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. [ZFA:0000079, ISBN:3764351209]" xsd:string property_value: UBPROP:0000008 "In ray-finned fishes the inner surfaces of the lateral and ventral regions of the cerebrum bulge up into the ventricles." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: UBPROP:0000008 "In the amniotes, the cerebrum becomes increasingly large and complex. In reptiles, the paleopallium is much larger than in amphibians, and its growth has pushed the basal nuclei into the central regions of the cerebrum." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: UBPROP:0000008 "In the most primitive living vertebrates, the hagfishes and lampreys, the cerebrum is a relatively simple structure receiving nerve impulses from the olfactory bulb." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} property_value: UBPROP:0000008 "The cerebrum of birds has evolved along different lines to that of mammals, although they are similarly enlarged, by comparison with reptiles. However, this enlargement is largely due to the basal ganglia, with the other areas remaining relatively primitive in structure." xsd:string {source="Wikipedia:Telencephalon#Variation_among_species"} [Term] id: UBERON:0001894 name: diencephalon namespace: uberon def: "The division of the forebrain that develops from the foremost primary cerebral vesicle." [Wikipedia:Diencephalon] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "between brain" EXACT [] synonym: "betweenbrain" RELATED [BTO:0000342] synonym: "DiE" BROAD OMO:0003000 [BIRNLEX:1503, NIFSTD:NeuroNames_abbrevSource] synonym: "diencephalon" RELATED OMO:0003011 [Wikipedia:Diencephalon] synonym: "interbrain" EXACT [Swanson:2004] synonym: "mature diencephalon" EXACT [FMA:62001] synonym: "thalamencephalon" EXACT [MGI:anna] xref: AAO:0010481 xref: BAMS:DI xref: BAMS:Di xref: BAMS:DiE xref: BAMS:IB xref: BAMS:Zh. xref: BIRNLEX:1503 xref: BM:Die xref: BTO:0000342 xref: CALOHA:TS-0199 xref: DHBA:10389 xref: DMBA:16308 xref: EFO:0000911 xref: EHDAA2:0000385 xref: EHDAA:1969 xref: EHDAA:2645 xref: EHDAA:3472 xref: EMAPA:16896 xref: EV:0100194 xref: FMA:62001 xref: GAID:618 xref: HBA:4391 xref: MA:0000171 xref: MAT:0000420 xref: MBA:1129 xref: MESH:D004027 xref: MIAA:0000420 xref: NCIT:C12456 xref: neuronames:288 {source="BIRNLEX:1503"} xref: PBA:128013010 xref: SCTID:279328001 xref: TAO:0000101 xref: UMLS:C0012144 {source="ncithesaurus:Diencephalon", source="BIRNLEX:1503"} xref: VHOG:0000318 xref: Wikipedia:Diencephalon xref: XAO:0000013 xref: ZFA:0000101 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001890 ! forebrain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002171 UBERON:0001891 {exceptions="ZFA", source="ABA", source="https://github.com/obophenotype/uberon/issues/378", status="pending"} property_value: RO:0002171 UBERON:0002028 {source="ABA"} property_value: RO:0002175 NCBITaxon:7762 {notes="not well differentiated from the cerebrum. (Ariens, p. 868)", source="PMID:8932866"} property_value: UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000101", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010481", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000318", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "diencephalic" xsd:string property_value: UBPROP:0000012 "in ABA, this is part of the brain stem" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0001895 name: metencephalon namespace: uberon def: "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum[WP,modified]." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Metencephalon] comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. subset: pheno_slim subset: uberon_slim synonym: "epencephalon" BROAD INCONSISTENT [ncithesaurus:Epencephalon] synonym: "epencephalon-2" EXACT [FMA:62003] xref: BAMS:Met xref: BIRNLEX:965 xref: BTO:0000673 xref: CALOHA:TS-2029 xref: DHBA:10655 xref: EHDAA2:0001149 xref: EHDAA:5498 xref: EMAPA:17071 xref: FMA:62003 xref: GAID:594 xref: HBA:4833 xref: MA:0000197 xref: MESH:D020540 xref: NCIT:C32741 xref: neuronames:543 {source="BIRNLEX:965"} xref: UMLS:C0376353 {source="BIRNLEX:965"} xref: UMLS:C1516904 {source="ncithesaurus:Epencephalon"} xref: VHOG:0000741 xref: Wikipedia:Metencephalon is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: part_of UBERON:0002028 ! hindbrain property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002174 NCBITaxon:7955 property_value: UBPROP:0000001 "Anterior part of the hindbrain ventral to the cerebellum[BIRNLEX:965]." xsd:string {source="BIRNLEX:965"} property_value: UBPROP:0000001 "The anterior of two brain vesicles formed by specialization of the rhombencephalon in the developing embryo. It gives rise to cerebellum and pons. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/metencephalon"} property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001896 name: medulla oblongata namespace: uberon def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bulb" BROAD [] synonym: "bulbus" EXACT OMO:0003011 [FMA:62004, FMA:TA] synonym: "medulla" BROAD [ABA:MY] synonym: "medulla oblonzata" RELATED OMO:0003011 [Wikipedia:Medulla_oblongata] synonym: "metepencephalon" RELATED [FMA:62004] xref: AAO:0010486 xref: BAMS:Md xref: BAMS:MY xref: BIRNLEX:957 xref: BM:Me xref: BTO:0000041 xref: CALOHA:TS-0607 xref: DMBA:17352 xref: EFO:0000924 xref: EHDAA2:0001088 xref: EHDAA:7588 xref: EMAPA:17550 xref: EV:0100275 xref: FMA:62004 xref: GAID:590 xref: MA:0000206 xref: MAT:0000111 xref: MAT:0000367 xref: MBA:354 xref: MESH:D008526 xref: MIAA:0000111 xref: NCIT:C12442 xref: neuronames:698 {source="BIRNLEX:957"} xref: SCTID:279104005 xref: TAO:0000545 xref: UMLS:C0025148 {source="ncithesaurus:Medulla_Oblongata", source="BIRNLEX:957"} xref: UMLS:C1269575 {source="BIRNLEX:957"} xref: VHOG:0000181 xref: Wikipedia:Bone_marrow_of_ovary_oblongata xref: XAO:0003100 xref: ZFA:0000545 relationship: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0005290 ! myelencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010486", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The posterior region of the brain that is continuous with the spinal cord. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-17, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000181", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "Classical anatomical studies subdivided the vertebrate rhombencephalon into pons and medulla oblongata. (...) The medulla oblongata appears therefore as a tagma, that is, a group of segmental units (pseudorhombomeres, in this case) sharing some morphological and molecular characteristics, and in some aspects different from the segmental units present in adjoining brain regions, pons and spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000181", ontology="VHOG", source="DOI:10.1016/j.ydbio.2008.08.017 Marin F, Aroca P, Puelles L, Hox gene colinear expression in the avian medulla oblongata is correlated with pseudorhombomeric domains. Developmental Biology (2008)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001897 name: dorsal plus ventral thalamus namespace: uberon def: "Subcortical brain region consisting of paired gray matter bodies in the dorsal diencephalon and forming part of the lateral wall of the third ventricle of the brain. The thalamus represents the major portion of the diencephalon and is commonly divided into cellular aggregates known as nuclear groups.(MeSH). The dorsal topographic division of the interbrain. The macrodissected adult human thalamus was clearly illustrated by Vesalius in 1543 and the term as defined here was introduced by His in 1893. It includes the traditional epithalamus, dorsal thalamus, and ventral thalamus of Herrick (1910, pp. 494, 498). Also see Kuhlenbeck (1927, Ch. 9) and Jones (1985, p. 87)." [BIRNLEX:954] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Th" BROAD OMO:0003000 [BIRNLEX:954, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] synonym: "thalamencephalon" RELATED OMO:0003011 [NeuroNames:300] synonym: "thalami" RELATED OMO:0003004 [VHOG:0000657] synonym: "thalamus" BROAD [FMA:62007, MA:0000179] synonym: "thalamus opticus" RELATED OMO:0003011 [NeuroNames:300] synonym: "wider thalamus" EXACT [PMCID:PMC3345571] xref: AAO:0010483 xref: BAMS:TH xref: BAMS:Th xref: BIRNLEX:954 xref: BTO:0001365 xref: CALOHA:TS-1031 xref: DHBA:10390 xref: DMBA:16376 xref: EFO:0000910 xref: EMAPA:17540 xref: EV:0100195 xref: GAID:656 xref: galen:Thalamus xref: HBA:4392 xref: MA:0000179 xref: MAT:0000109 xref: MBA:549 xref: MIAA:0000109 xref: NCIT:C12459 xref: neuronames:300 {source="BIRNLEX:954"} xref: PBA:128013014 xref: SCTID:244433007 xref: TAO:0001215 xref: UMLS:C0039729 {source="BIRNLEX:954", source="ncithesaurus:Thalamus"} xref: VHOG:0000657 xref: Wikipedia:Thalamus xref: ZFA:0001215 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010225 ! thalamic complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Brain_chrischan_thalamus.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0001898 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "One of a pair of large oval nervous structures made of gray matter and forming most of the lateral walls of the third ventricle of the brain and part of the diencephalon. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000657", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/thalamus"} property_value: UBPROP:0000001 "Part of the diencephalon consisting of a mass of connecting fibers which relay sensory information to the cerebral cortex.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010483", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "(...) the brain regions of tetrapods, the structures they contain, and their basic organizational features are the same as in fishes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000657", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.484", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "thalamic" xsd:string [Term] id: UBERON:0001898 name: hypothalamus namespace: uberon def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Hy" BROAD OMO:0003000 [BIRNLEX:734, NIFSTD:NeuroNames_abbrevSource] synonym: "hypothalamus" RELATED OMO:0003011 [Wikipedia:Hypothalamus] synonym: "preoptico-hypothalamic area" EXACT [] synonym: "preoptico-hypothalamic region" EXACT [] xref: AAO:0010484 xref: BAMS:HY xref: BAMS:Hy xref: BIRNLEX:734 xref: BM:Die-Hy xref: BTO:0000614 xref: CALOHA:TS-0469 xref: DHBA:10467 xref: EFO:0000107 xref: EHDAA2:0000802 xref: EHDAA:5446 xref: EMAPA:17536 xref: EV:0100225 xref: FMA:62008 xref: GAID:460 xref: galen:Hypothalamus xref: HBA:4540 xref: MA:0000173 xref: MAT:0000112 xref: MBA:1097 xref: MESH:D007031 xref: MIAA:0000112 xref: NCIT:C12458 xref: neuronames:292 {source="BIRNLEX:734"} xref: SCTID:264483005 xref: TAO:0000032 xref: UMLS:C0020663 {source="BIRNLEX:734", source="ncithesaurus:Hypothalamus"} xref: VHOG:0000179 xref: Wikipedia:Hypothalamus xref: XAO:0004070 xref: ZFA:0000032 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0010225 {missing_from="FMA", source="EHDAA2", source="Wikipedia"} ! thalamic complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002171 UBERON:0001897 {source="ABA"} property_value: RO:0002174 NCBITaxon:7737 {notes="Lancelets possess a region similar to the hypothalamus (Murakami, 2005)"} property_value: RO:0002175 NCBITaxon:117569 {source="Ariens, p. 1192"} property_value: RO:0002175 NCBITaxon:7742 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000032", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Part of the diencephalon ventral to the thalamus consisting of connecting fibers and is a center for control of the autonomous nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010484", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "For instance, the vertebrate ventral diencephalon generates the hypothalamus which functions as a major endocrine center in cooperation with the hypophysis, the anterior part of the pituitary gland, located just ventral to the hypothalamus. In the amphioxus brain, the presence of a hypothalamus-like structure has been reported associated with the ventrally located Hatschek's pit, the hypothetical hypophysial homologue. It is thus conceivable that a hypothalamus-like structure originally involved in endocrine functions may have already been present before the establishment of vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000179", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.008 Murakami Y, Uchida K, Rijli FM and Kuratani S, Evolution of the brain developmental plan: Insights from agnathans. Developmental Biology (2005)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "hypothalamic" xsd:string property_value: UBPROP:0000008 "all vertebrates contain a hypothalamus" xsd:string {source="WP"} [Term] id: UBERON:0001899 name: epithalamus namespace: uberon def: "Most dorsal part of the thalamus, comprising the pineal gland and habenular nuclei in most vertebrates. In a few vertebrates, it also includes the parietal eye. (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed, 2005, pg. 345-346." [BIRNLEX:1710] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithalamus" RELATED OMO:0003011 [Wikipedia:Epithalamus] synonym: "ETh" BROAD OMO:0003000 [BIRNLEX:1710, NIFSTD:NeuroNames_abbrevSource] xref: AAO:0010482 xref: BAMS:EPI xref: BAMS:Epi xref: BAMS:EpT xref: BAMS:ETh xref: BIRNLEX:1710 xref: BM:Die-Epi xref: BTO:0000175 xref: CALOHA:TS-2060 xref: DHBA:10451 xref: EFO:0000918 xref: EHDAA2:0000448 xref: EHDAA:5433 xref: EMAPA:17532 xref: EV:0100220 xref: FMA:62009 xref: GAID:455 xref: HBA:4520 xref: MA:0000172 xref: MAT:0000422 xref: MBA:958 xref: MESH:D019261 xref: MIAA:0000422 xref: NCIT:C12457 xref: neuronames:292 {source="BIRNLEX:1710"} xref: PBA:128013147 xref: SCTID:281487003 xref: TAO:0000509 xref: UMLS:C0152361 {source="BIRNLEX:1710", source="ncithesaurus:Epithalamus"} xref: VHOG:0000178 xref: Wikipedia:Epithalamus xref: ZFA:0000509 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Epithalamus.png" xsd:anyURI property_value: RO:0002171 UBERON:0001903 {source="ABA"} property_value: RO:0002171 UBERON:0002733 {source="ABA"} property_value: RO:0002171 UBERON:0002736 {source="ABA"} property_value: RO:0002175 NCBITaxon:7742 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010482", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The roof of the diencephalon lying above the thalamus. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-11, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000178", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The epithalamus has been historically conceived as a distinct neuroanatomical moiety within the diencephalon of all vertebrates. (...) The evolutionary origins of epithalamic structures are uncertain but asymmetry in this region is likely to have existed at the origin of the vertebrate, perhaps even the chordate, lineage.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000178", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910063.x Concha ML and Wilson SW, Asymmetry in the epithalamus of vertebrates. J Anat (2001)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "epithalamic" xsd:string [Term] id: UBERON:0001900 name: ventral thalamus namespace: uberon def: "Anterior part of the diencephalon that lies between the dorsal thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO, modified]." [GO:0021539] comment: Some sources treat the subthalamus as distinct from the thalamus, separated by the zona limitans intrathalamica. In MA, the ventral thalamus is part of the thalamus. Butler Hodos who identify a dorsal to ventral sequence consisting of epithalamus, dorsal thalamus, ventral thalamus and hypothalamus. We solve this by considering dorsal and ventral thalamus distinct, and the label thalamus as being ambiguous w.r.t thalamus proper (dorsal thalamus) or wider thalamus (dorsal plus ventral) subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "perithalamus" RELATED [Wikipedia:Thalamus] synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] synonym: "SbTh" BROAD OMO:0003000 [BIRNLEX:708, NIFSTD:NeuroNames_abbrevSource] synonym: "subthalamic region" EXACT [BIRNLEX:708, FMA:62010] synonym: "subthalamus" EXACT [BIRNLEX:708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT OMO:0003011 [BIRNLEX:708] synonym: "ventral thalamus" EXACT [GO:0021539, MA:0000181] xref: BAMS:SbTh xref: BAMS:Ventral_thalamus xref: BAMS:VNT xref: BAMS:VT xref: BIRNLEX:708 xref: BM:Die-VTh xref: CALOHA:TS-2048 xref: DHBA:10461 xref: DMBA:16310 xref: EHDAA2:0004470 xref: EMAPA:35915 xref: EV:0100223 xref: FMA:62010 xref: GAID:653 xref: HBA:4504 xref: MA:0000181 xref: MESH:D020530 xref: NCIT:C52731 xref: neuronames:434 {source="BIRNLEX:708"} xref: SCTID:279332007 xref: TAO:0000458 xref: UMLS:C0152349 {source="BIRNLEX:708", source="ncithesaurus:Ventral_Thalamus"} xref: Wikipedia:Subthalamus xref: ZFA:0000458 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus property_value: RO:0002175 NCBITaxon:117569 {source="Ariens, p. 1192"} property_value: RO:0002175 NCBITaxon:7742 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "subthalamic" xsd:string [Term] id: UBERON:0001903 name: thalamic reticular nucleus namespace: uberon def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [Wikipedia:Thalamic_reticular_nucleus] subset: human_reference_atlas subset: uberon_slim synonym: "nuclei reticulares (thalami)" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus reticularis" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus reticularis thalami" EXACT OMO:0003011 [FMA:62026, FMA:TA] synonym: "nucleus reticularis thalami" RELATED OMO:0003011 [Wikipedia:Thalamic_reticular_nucleus] synonym: "nucleus reticulatus (thalami)" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus thalamicus reticularis" RELATED OMO:0003011 [NeuroNames:365] synonym: "reticular nuclear group" EXACT [] synonym: "reticular nucleus of thalamus" EXACT [] synonym: "reticular nucleus of the thalamus" EXACT [] synonym: "reticular nucleus thalamus (Arnold)" RELATED [NeuroNames:365] synonym: "reticular nucleus-2" EXACT [] synonym: "reticular thalamic nucleus" EXACT [] synonym: "reticulatum thalami (Hassler)" RELATED OMO:0003011 [NeuroNames:365] xref: BAMS:RT xref: BAMS:Rt xref: BIRNLEX:1721 xref: BM:Die-VTh-R xref: DHBA:10464 xref: EMAPA:35737 xref: EV:0100214 xref: FMA:62026 xref: HBA:4506 xref: MA:0000876 xref: MBA:262 xref: neuronames:365 {source="BIRNLEX:1721"} xref: SCTID:279164008 xref: Wikipedia:Thalamic_reticular_nucleus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 {source="MA"} ! ventral thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Constudthal.gif" xsd:anyURI property_value: RO:0002171 UBERON:0001899 {source="ABA"} property_value: RO:0002171 UBERON:0002733 {source="ABA"} property_value: RO:0002171 UBERON:0002736 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "only MA considers this part of a subthalamus; MA also considers a subthalamus part of a thalamus" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001904 name: habenula namespace: uberon def: "A segment of the epithalamus that has as its parts the habenular nuclei and the habenular commissure[FMA,modified]." [FMA:62032, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglion intercrurale" RELATED OMO:0003011 [NeuroNames:294] synonym: "ganglion interpedunculare" RELATED OMO:0003011 [NeuroNames:294] synonym: "habenula complex" EXACT OMO:0003011 [FMA:62032, FMA:TA] synonym: "habenulae" RELATED [] synonym: "habenular complex" RELATED [] synonym: "habenular nuclei" RELATED [] synonym: "Hb" BROAD OMO:0003000 [BIRNLEX:1611, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei habenulares" RELATED OMO:0003011 [NeuroNames:294] synonym: "nucleus habenularis" RELATED OMO:0003011 [NeuroNames:294] synonym: "pineal peduncle" RELATED [BTO:0003684] xref: BAMS:HB xref: BAMS:Hb xref: BIRNLEX:1611 xref: BTO:0003684 xref: EMAPA:35386 xref: EV:0100222 xref: FMA:62032 xref: GAID:619 xref: HBA:4522 xref: MA:0000830 xref: MESH:D019262 xref: neuronames:294 {source="BIRNLEX:1611"} xref: SCTID:362389008 xref: TAO:0000213 xref: UMLS:C0152362 {source="BIRNLEX:1611"} xref: Wikipedia:Habenula xref: ZFA:0000213 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001899 ! epithalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:7762 {source="Butler, 1996, p. 303"} property_value: UBPROP:0000001 "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000213", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000007 "habenular" xsd:string [Term] id: UBERON:0001905 name: pineal body namespace: uberon def: "A midline, cone like structure located in the dorso-caudal roof of the 3rd ventricle, attached by peduncles to the habenular and posterior commissures. The stalk contains nerve fibers, blood vessels, connective tissue and parenchymal cells (Paxinos, The Rat Central Nervous System, 2nd ed, pg 399)." [BIRNLEX:1184] subset: efo_slim subset: human_reference_atlas subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "conarium" RELATED [BIRNLEX:1184] synonym: "corpus pineale" EXACT [] synonym: "epiphysis" RELATED INCONSISTENT [ZFA:0000019] synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] synonym: "frontal organ" RELATED [VHOG:0000051] synonym: "glandula pinealis" EXACT OMO:0003011 [FMA:62033, FMA:TA] synonym: "Pi" BROAD OMO:0003000 [BIRNLEX:1184, NIFSTD:NeuroNames_abbrevSource] synonym: "pineal" RELATED [VHOG:0000051] synonym: "pineal gland" EXACT [FMA:62033] synonym: "pineal gland (Galen)" RELATED [NeuroNames:297] synonym: "pineal organ" EXACT [ZFA:0000019] synonym: "stirnorgan" RELATED [VHOG:0000051] xref: AAO:0010549 xref: BAMS:Pi xref: BAMS:PIN xref: BIRNLEX:1184 xref: BM:P xref: BTO:0001067 xref: CALOHA:TS-0789 xref: DHBA:10460 xref: EFO:0000865 xref: EHDAA2:0001466 xref: EHDAA:7523 xref: EMAPA:18778 xref: EV:0100131 xref: EV:0100221 xref: FMA:62033 xref: GAID:453 xref: galen:PinealGland xref: HBA:4532 xref: MA:0000175 xref: MAT:0000448 xref: MBA:953 xref: MESH:D010870 xref: NCIT:C12398 xref: neuronames:297 {source="BIRNLEX:1184"} xref: NLXANAT:1010009 xref: SCTID:181126002 xref: TAO:0000019 xref: UMLS:C0031939 {source="ncithesaurus:Pineal_Gland", source="BIRNLEX:1184"} xref: VHOG:0000051 xref: Wikipedia:Pineal_gland xref: XAO:0000160 xref: ZFA:0000019 is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ relationship: part_of UBERON:0015238 {source="ZFA", source="various"} ! pineal complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002171 UBERON:0001941 {source="ABA"} property_value: RO:0002171 UBERON:0001942 {source="ABA"} property_value: RO:0002175 NCBITaxon:117569 {source="Hardisty, p. 310"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010549", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO"} property_value: UBPROP:0000003 "The pineal gland has evolved from a part of the epiphyseal complex of anamniotes, which includes a median light-receptive pineal eye, parietal eye, or both.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000051", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.516", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "epiphyseal" xsd:string property_value: UBPROP:0000007 "epiphysial" xsd:string property_value: UBPROP:0000008 "lobulated in humans, homogeneous in mouse. Calcifies with age in humans." xsd:string [Term] id: UBERON:0001906 name: subthalamic nucleus namespace: uberon def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [GO:0021763] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "body of Forel" EXACT [] synonym: "body of Luys" EXACT [] synonym: "corpus Luysi" RELATED [Wikipedia:Subthalamic_nucleus] synonym: "corpus subthalamicum" RELATED OMO:0003011 [Wikipedia:Subthalamic_nucleus] synonym: "Luy's body" RELATED [Wikipedia:Subthalamic_nucleus] synonym: "Luys' body" RELATED [BTO:0002252] synonym: "Luys' nucleus" EXACT [] synonym: "nucleus of corpus luysii" EXACT [] synonym: "nucleus of Luys" EXACT [Wikipedia:Subthalamic_nucleus] synonym: "nucleus subthalamicus" EXACT OMO:0003011 [BTO:0002252, Wikipedia:Subthalamic_nucleus] synonym: "subthalamic nucleus (of Luys)" EXACT [] synonym: "subthalamic nucleus of Luys" RELATED [Wikipedia:Subthalamic_nucleus] xref: BAMS:STh xref: BAMS:STN xref: BAMS:SUB xref: BM:Die-Sb xref: BTO:0002252 xref: CALOHA:TS-1154 xref: DHBA:10466 xref: EFO:0001392 xref: EMAPA:35839 xref: EV:0100224 xref: FMA:62035 xref: GAID:655 xref: HBA:4518 xref: MA:0000877 xref: MBA:470 xref: MESH:D020531 xref: NCIT:C12454 xref: neuronames:435 xref: NLXANAT:1010002 xref: SCTID:361575000 xref: UMLS:C0152355 {source="ncithesaurus:Subthalamic_Nucleus"} xref: Wikipedia:Subthalamic_nucleus is_a: UBERON:0015233 ! nucleus of dorsal thalamus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 {source="NIFSTD"} ! ventral thalamus relationship: part_of UBERON:0002776 {notes="part of hypothalamus in ABA"} ! ventral nuclear group property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Basal-ganglia-coronal-sections-large.png" xsd:anyURI property_value: RO:0002171 UBERON:0001907 {source="ABA"} property_value: RO:0002171 UBERON:0001931 {source="ABA"} property_value: RO:0002171 UBERON:0001933 {source="ABA"} property_value: RO:0002171 UBERON:0002430 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Lens shaped nucleus lying in the subthalamu[NLXANAT:1010002]s" xsd:string {source="NLXANAT:1010002"} [Term] id: UBERON:0001907 name: zona incerta namespace: uberon def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to 'limbic-motor integration' such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a 'region of which nothing certain can be said'. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschênes of Université Laval noted that the 'zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ' [WP,unvetted]." [Wikipedia:Zona_incerta] subset: human_reference_atlas subset: uberon_slim synonym: "nucleus of the zona incerta" RELATED [BAMS:ZI] synonym: "zona incerta proper" RELATED [BAMS:ZI] xref: BAMS:ZI xref: BM:Die-VTh-ZI xref: BTO:0003146 xref: DHBA:10463 xref: EMAPA:35930 xref: FMA:62038 xref: HBA:4507 xref: MA:0000878 xref: MBA:797 xref: MESH:D065820 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:438 xref: SCTID:369186007 xref: Wikipedia:Zona_incerta is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 ! ventral thalamus property_value: RO:0002171 UBERON:0001906 {source="ABA"} property_value: RO:0002171 UBERON:0001931 {source="ABA"} property_value: RO:0002171 UBERON:0001933 {source="ABA"} property_value: RO:0002171 UBERON:0002430 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001908 name: optic tract namespace: uberon def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [NIFSTD, Wikipedia:Optic_tract, ZFIN:curator] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "optic lemniscus" EXACT [] synonym: "optic tracts" RELATED OMO:0003004 [ZFA:0000252] synonym: "tractus optici" RELATED OMO:0003011 [NeuroNames:460] synonym: "tractus opticus" RELATED OMO:0003011 [Wikipedia:Optic_tract] synonym: "visual pathway" RELATED [GAID:735] xref: BAMS:opt xref: BIRNLEX:1684 xref: BM:Tel-OT xref: DHBA:10589 xref: DMBA:17785 xref: EMAPA:35617 xref: FMA:62046 xref: GAID:735 xref: HBA:9309 xref: MA:0001099 xref: MBA:125 xref: MESH:D014795 xref: NCIT:C33218 xref: neuronames:460 {source="BIRNLEX:1684"} xref: SCTID:280952003 xref: TAO:0000252 xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract", source="BIRNLEX:1684"} xref: VHOG:0001164 xref: Wikipedia:Optic_tract xref: XAO:0004101 xref: ZFA:0000252 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0003931 ! diencephalic white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: IAO:0000116 "relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001909 name: habenular commissure namespace: uberon def: "A brain commissure that is situated in front of the pineal gland and connects the habenular nucleus on one side of the diencephalon with that on the other side." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Habenular_commissure] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "commissura habenularis" RELATED OMO:0003011 [NeuroNames:299] synonym: "commissura habenularum" EXACT OMO:0003011 [Wikipedia:Habenular_commissure, ZFA:0000359] synonym: "commissure habenularum" EXACT [MP:0008231] synonym: "habenular commissure (Haller)" RELATED [NeuroNames:299] synonym: "habenular commisure" RELATED [BAMS:hbc] synonym: "HBC" BROAD OMO:0003000 [BIRNLEX:1609, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:hbc xref: BAMS:HC xref: BAMS:HG xref: BIRNLEX:1609 xref: BM:Die-Epi-HC xref: DHBA:10566 xref: DMBA:17768 xref: EMAPA:37875 {source="MA:th"} xref: FMA:62048 xref: HBA:9227 xref: MBA:611 xref: neuronames:299 {source="BIRNLEX:1609"} xref: SCTID:279335009 xref: TAO:0000359 xref: UMLS:C0152363 {source="BIRNLEX:1609"} xref: Wikipedia:Habenular_commissure xref: ZFA:0000359 is_a: UBERON:0005341 {source="MP"} ! ventral commissure is_a: UBERON:0011590 ! commissure of diencephalon is_a: UBERON:0025261 ! thalamic fiber tract relationship: part_of UBERON:0001904 {source="FMA"} ! habenula relationship: part_of UBERON:0003931 {source="ZFA-modified"} ! diencephalic white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI [Term] id: UBERON:0001910 name: medial forebrain bundle namespace: uberon def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [Wikipedia:Medial_forebrain_bundle] subset: uberon_slim subset: vertebrate_core synonym: "fasciculus longitudinalis telencephali medialis" RELATED OMO:0003011 [NeuroNames:433] synonym: "fasciculus medialis telencephali" RELATED OMO:0003011 [Wikipedia:Medial_forebrain_bundle] synonym: "fasciculus medialis telencephalicus" RELATED OMO:0003011 [NeuroNames:433] synonym: "fasciculus prosencephalicus medialis" RELATED OMO:0003011 [NeuroNames:433] synonym: "medial forebrain bundles" RELATED OMO:0003004 [ZFA:0005111] synonym: "medial forebrain fasciculus" EXACT [] synonym: "median forebrain bundle" RELATED [NeuroNames:433] synonym: "MFB" BROAD OMO:0003000 [BIRNLEX:908, NIFSTD:NeuroNames_abbrevSource] synonym: "telencephalic medial fasciculus" EXACT [] xref: BAMS:mfb xref: BIRNLEX:908 xref: DHBA:10587 xref: FMA:62064 xref: GAID:736 xref: HBA:265505190 xref: MBA:54 xref: MESH:D008474 xref: NCIT:C13083 xref: neuronames:433 {source="BIRNLEX:908"} xref: TAO:0005111 xref: UMLS:C0025055 {source="BIRNLEX:908", source="ncithesaurus:Medial_Forebrain_Bundle"} xref: Wikipedia:Medial_forebrain_bundle xref: ZFA:0005111 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001898 {source="NIFSTD"} ! hypothalamus property_value: UBPROP:0000012 "a pathway in NCIT" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0001920 name: paraventricular nucleus of thalamus namespace: uberon def: "The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle." [Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nuclei paraventriculares thalami" EXACT OMO:0003011 [FMA:62152, FMA:TA] synonym: "nucleus paramedianus (Hassler)" RELATED OMO:0003011 [NeuroNames:308] synonym: "nucleus paraventricularis thalami" RELATED OMO:0003011 [NeuroNames:308] synonym: "paraventricular gray" EXACT [] synonym: "paraventricular nuclei" RELATED OMO:0003004 [] synonym: "paraventricular nuclei of thalamus" EXACT OMO:0003004 [] synonym: "paraventricular nucleus of the thalamus" RELATED [NeuroNames:308] synonym: "paraventricular thalamic nucleus" EXACT [] synonym: "PV" BROAD OMO:0003000 [BIRNLEX:764, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PV xref: BAMS:PVT xref: BIRNLEX:764 xref: BM:Die-Th-Pa xref: BTO:0002460 xref: DHBA:10457 xref: EMAPA:35666 xref: FMA:62152 xref: HBA:4533 xref: MA:0000866 xref: MBA:149 xref: neuronames:308 {source="BIRNLEX:764"} xref: SCTID:369163000 xref: UMLS:C0175253 {source="BIRNLEX:764"} is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002705 {source="FMA"} ! midline nuclear group property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0002992 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001921 name: reuniens nucleus namespace: uberon subset: human_reference_atlas synonym: "medioventral nucleus" EXACT [FMA:62153] synonym: "nucleus endymalis (Hassler)" RELATED OMO:0003011 [NeuroNames:309] synonym: "nucleus of reunions" RELATED [NeuroNames:309] synonym: "nucleus reuniens" EXACT [] synonym: "nucleus reuniens (Malone)" RELATED [NeuroNames:309] synonym: "nucleus reuniens thalami" RELATED OMO:0003011 [NeuroNames:309] synonym: "Re" BROAD OMO:0003000 [BIRNLEX:770, NIFSTD:NeuroNames_abbrevSource] synonym: "reuniens nucleus of the thalamus" RELATED [BAMS:RE] synonym: "reuniens thalamic nucleus" EXACT [FMA:62153] xref: BAMS:RE xref: BAMS:Re xref: BIRNLEX:770 xref: BTO:0002459 xref: DHBA:10403 xref: EMAPA:35602 xref: FMA:62153 xref: MA:0000865 xref: MBA:181 xref: neuronames:309 {source="BIRNLEX:770"} xref: SCTID:369164006 xref: UMLS:C0228327 {source="BIRNLEX:770"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001922 name: parafascicular nucleus namespace: uberon subset: human_reference_atlas subset: pheno_slim synonym: "nuclei parafasciculares thalami" EXACT [BIRNLEX:952] synonym: "nucleus parafascicularis" EXACT [BIRNLEX:952] synonym: "nucleus parafascicularis (Hassler)" EXACT [BIRNLEX:952] synonym: "nucleus parafascicularis thalami" EXACT [BIRNLEX:952] synonym: "parafascicular nucleus (vogt)" EXACT [BIRNLEX:952] synonym: "parafascicular nucleus of thalamus" EXACT [] synonym: "parafascicular nucleus of the thalamus" EXACT [BIRNLEX:952] synonym: "parafascicular thalamic nucleus" EXACT [] synonym: "PF" BROAD OMO:0003000 [BIRNLEX:952, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PF xref: BIRNLEX:952 xref: BM:Die-Th-Pf xref: DHBA:10450 xref: DMBA:16442 xref: EMAPA:35659 xref: EV:0100202 xref: FMA:62166 xref: HBA:4439 xref: MA:0000874 xref: MBA:930 xref: NCIT:C33260 xref: neuronames:324 {source="BIRNLEX:952"} xref: SCTID:279150008 xref: UMLS:C0228352 {source="ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus", source="BIRNLEX:952"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group property_value: RO:0002171 UBERON:0001923 {source="ABA"} property_value: RO:0002171 UBERON:0001924 {source="ABA"} property_value: RO:0002171 UBERON:0002955 {source="ABA"} property_value: RO:0002171 UBERON:0003036 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001923 name: central medial nucleus namespace: uberon def: "A small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929] subset: pheno_slim synonym: "central medial nucleus of thalamus" EXACT [] synonym: "central medial nucleus of the thalamus" RELATED [NeuroNames:321] synonym: "central medial nucleus thalamus (rioch 1928)" EXACT [BIRNLEX:971] synonym: "central medial thalamic nucleus" EXACT [] synonym: "centromedial thalamic nucleus" RELATED [BAMS:CM] synonym: "CM" BROAD OMO:0003000 [BIRNLEX:971, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus centralis medialis" EXACT [BIRNLEX:971] synonym: "nucleus centralis medialis thalami" EXACT [BIRNLEX:971] xref: BAMS:CM xref: BAMS:CMN xref: BAMS:GMN xref: BIRNLEX:971 xref: BM:Die-CeM xref: BTO:0003753 xref: DHBA:10445 xref: EMAPA:35206 xref: FMA:62171 xref: HBA:4438 xref: MA:0000872 xref: MBA:599 xref: neuronames:321 {source="BIRNLEX:971"} xref: PBA:128012616 xref: SCTID:279161000 xref: UMLS:C0920328 {source="BIRNLEX:971"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group property_value: RO:0002171 UBERON:0001922 {source="ABA"} property_value: RO:0002171 UBERON:0001924 {source="ABA"} property_value: RO:0002171 UBERON:0002955 {source="ABA"} property_value: RO:0002171 UBERON:0003036 {source="ABA"} [Term] id: UBERON:0001924 name: paracentral nucleus namespace: uberon def: "One of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928] subset: pheno_slim synonym: "nucleus centralis lateralis superior (kusama)" EXACT [BIRNLEX:981] synonym: "nucleus paracentral" EXACT [BIRNLEX:981] synonym: "nucleus paracentral thalami" EXACT [BIRNLEX:981] synonym: "nucleus paracentralis" RELATED OMO:0003011 [NeuroNames:322] synonym: "nucleus paracentralis thalami" EXACT OMO:0003011 [FMA:62172, FMA:TA] synonym: "paracentral nucleus of thalamus" EXACT [] synonym: "paracentral nucleus of the thalamus" RELATED [NeuroNames:322] synonym: "paracentral nucleus thalamus (gurdjian 1927)" EXACT [BIRNLEX:981] synonym: "paracentral thalamic nucleus" EXACT [] synonym: "PC" BROAD OMO:0003000 [BIRNLEX:981, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PAC xref: BAMS:PC xref: BAMS:PCM xref: BAMS:PCN xref: BIRNLEX:981 xref: BM:Die-Th-Pc xref: DHBA:10446 xref: DMBA:16416 xref: EMAPA:35658 xref: EV:0100204 xref: FMA:62172 xref: HBA:4435 xref: MA:0000873 xref: MBA:907 xref: neuronames:322 {source="BIRNLEX:981"} xref: SCTID:279152000 xref: UMLS:C0228354 {source="BIRNLEX:981"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group property_value: IAO:0000116 "TODO - relationships" xsd:string property_value: RO:0002171 UBERON:0001922 {source="ABA"} property_value: RO:0002171 UBERON:0001923 {source="ABA"} property_value: RO:0002171 UBERON:0002955 {source="ABA"} property_value: RO:0002171 UBERON:0003036 {source="ABA"} [Term] id: UBERON:0001925 name: ventral lateral nucleus of thalamus namespace: uberon def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_lateral_nucleus] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "lateral ventral nucleus of thalamus" EXACT [FMA:62186] synonym: "lateral-ventral nuclei of thalamus" RELATED [BAMS:VTh] synonym: "nuclei ventrales laterales thalami" EXACT [FMA:TA] synonym: "nuclei ventrales laterales thalami" RELATED [BTO:0002463] synonym: "nucleus ventralis intermedius" EXACT [BIRNLEX:1237] synonym: "nucleus ventralis lateralis" EXACT [BIRNLEX:1237] synonym: "nucleus ventralis lateralis thalami" EXACT [BIRNLEX:1237] synonym: "nucleus ventralis thalami lateralis" EXACT [BIRNLEX:1237] synonym: "nucleus ventrolateralis thalami" EXACT [BIRNLEX:1237] synonym: "ventral lateral complex of thalamus" EXACT [FMA:62186] synonym: "ventral lateral nuclei of thalamus" RELATED [BTO:0002463] synonym: "ventral lateral nucleus" EXACT [FMA:62186] synonym: "ventral lateral nucleus of thalamus" EXACT [FMA:62186] synonym: "ventral lateral thalamic nuclei" EXACT [FMA:62186] synonym: "ventral lateral thalamic nucleus" EXACT [BIRNLEX:1237] synonym: "ventrolateral complex" RELATED [BAMS:VL] synonym: "ventrolateral thalamic nucleus" EXACT [FMA:62186] synonym: "VL" BROAD OMO:0003000 [BIRNLEX:1237, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VL xref: BAMS:VTh xref: BIRNLEX:1237 xref: BM:Die-Th-VL xref: BTO:0002463 xref: DHBA:10420 xref: DMBA:16428 xref: EMAPA:36654 xref: FMA:62186 xref: HBA:12925 xref: NCIT:C33862 xref: neuronames:337 {source="BIRNLEX:1237"} xref: SCTID:279146001 xref: TAO:0000306 xref: UMLS:C0228339 {source="BIRNLEX:1237", source="ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus"} xref: Wikipedia:Ventral_lateral_nucleus xref: ZFA:0000306 is_a: UBERON:0015233 ! nucleus of dorsal thalamus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 {source="ZFA"} ! ventral thalamus relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001926 name: lateral geniculate body namespace: uberon def: "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe." [ISBN:0-683-40008-8, MP:0004165] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "corpus geniculatum externum" RELATED [BTO:0004367] synonym: "corpus geniculatum laterale" RELATED [BTO:0004367] synonym: "corpus geniculatum laterales" EXACT [BIRNLEX:1662] synonym: "corpus geniculatus lateralis" RELATED OMO:0003011 [NeuroNames:352] synonym: "external geniculate body" RELATED [Wikipedia:Lateral_geniculate_nucleus] synonym: "lateral geniculate complex" EXACT [] synonym: "lateral geniculate nucleus" EXACT [] synonym: "LGB" RELATED OMO:0003000 [BTO:0004367] synonym: "LGN" BROAD OMO:0003000 [BIRNLEX:1662, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati lateralis" RELATED OMO:0003011 [BAMS:LG, NeuroNames:352] synonym: "nucleus geniculatus lateralis" EXACT [BIRNLEX:1662] xref: BAMS:C.gl. xref: BAMS:LG xref: BIRNLEX:1662 xref: BTO:0004366 xref: BTO:0004367 xref: DHBA:10429 xref: EFO:0001988 xref: EMAPA:35478 xref: EV:0100219 xref: FMA:62209 xref: MA:0000869 xref: NCIT:C32556 xref: neuronames:352 {source="BIRNLEX:1662"} xref: PBA:128013070 xref: SCTID:362377006 xref: UMLS:C0086526 {source="ncithesaurus:External_Geniculate_Body", source="BIRNLEX:1662"} xref: Wikipedia:Lateral_geniculate_body is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:117569 {source="Ariens, p. 1192"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "BTO has distinct classes for body and nucleus, but other sources treat as identical" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0001927 name: medial geniculate body namespace: uberon def: "Nuclear complex of the thalamus situated on the caudal, subpial aspect of the thalamus (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 622)." [BIRNLEX:1670] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "corpus geniculatum mediale" EXACT [BIRNLEX:1670] synonym: "corpus geniculatus medialis" RELATED OMO:0003011 [NeuroNames:355] synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body] synonym: "medial geniculate complex" EXACT [] synonym: "medial geniculate complex of dorsal thalamus" RELATED [BAMS:MG] synonym: "medial geniculate nuclei" EXACT [] synonym: "medial geniculate nucleus" EXACT [] synonym: "MGB" RELATED [BTO:0002674] synonym: "MGN" BROAD OMO:0003000 [BIRNLEX:1670, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei corporis geniculati medialis" EXACT OMO:0003011 [FMA:62211, FMA:TA] synonym: "nucleus corporis geniculati medialis" RELATED OMO:0003011 [NeuroNames:355] synonym: "nucleus geniculatus medialis" RELATED OMO:0003011 [NeuroNames:355] xref: BAMS:C.gm. xref: BAMS:MG xref: BIRNLEX:1670 xref: BM:Die-Th-MG xref: BTO:0002674 xref: DHBA:10434 xref: DMBA:16462 xref: EFO:0001968 xref: EMAPA:35546 xref: EV:0100218 xref: FMA:62211 xref: HBA:12926 xref: MA:0000870 xref: MBA:475 xref: NCIT:C32843 xref: neuronames:355 {source="BIRNLEX:1670"} xref: SCTID:362378001 xref: UMLS:C0086596 {source="ncithesaurus:Internal_Geniculate_Body", source="BIRNLEX:1670"} xref: Wikipedia:Medial_geniculate_body is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002171 UBERON:0002479 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001928 name: preoptic area namespace: uberon def: "Area of the forebrain between the anterior commissure and optic chiasm." [Wikipedia:Preoptic_area, ZFIN:curator] subset: efo_slim subset: uberon_slim subset: vertebrate_core synonym: "area hypothalamica rostralis" RELATED [BTO:0001796] synonym: "area praeoptica" RELATED [] synonym: "area preoptica" RELATED OMO:0003011 [Wikipedia:Preoptic_area] synonym: "nuclei preoptici" RELATED OMO:0003011 [NeuroNames:377] synonym: "POA" BROAD OMO:0003000 [BIRNLEX:1706, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] synonym: "preoptic hypothalamic area" RELATED [BTO:0001796] synonym: "preoptic hypothalamic region" RELATED [BTO:0001796] synonym: "preoptic nuclei" EXACT [] synonym: "preoptic region" RELATED [] synonym: "preoptic region of hypothalamus" EXACT [] synonym: "regio hypothalamica anterior" RELATED [BTO:0001796] xref: BAMS:POA xref: BIRNLEX:1706 xref: BM:Die-Hy-POA xref: BTO:0001796 xref: CALOHA:TS-0822 xref: DMBA:15577 xref: EFO:0002523 xref: EMAPA:36655 xref: FMA:62313 xref: GAID:644 xref: HBA:4541 xref: MESH:D011301 xref: neuronames:377 {source="BIRNLEX:1706"} xref: SCTID:362382004 xref: TAO:0000470 xref: UMLS:C0033063 {source="BIRNLEX:1706"} xref: UMLS:C1284641 {source="BIRNLEX:1706"} xref: Wikipedia:Preoptic_area xref: ZFA:0000470 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002175 NCBITaxon:7742 property_value: UBPROP:0000001 "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000470", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "Located in the hypothalamus in amniotes[PMC4038951]" xsd:string [Term] id: UBERON:0001929 name: supraoptic nucleus namespace: uberon def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Supraoptic_nucleus] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus supraopticus" EXACT [BTO:0002697] synonym: "nucleus supraopticus" RELATED OMO:0003011 [Wikipedia:Supraoptic_nucleus] synonym: "nucleus supraopticus hypothalami" RELATED OMO:0003011 [NeuroNames:385] synonym: "nucleus tangentialis (Riley)" RELATED OMO:0003011 [NeuroNames:385] synonym: "SO" BROAD OMO:0003000 [BIRNLEX:1411, NIFSTD:NeuroNames_abbrevSource] synonym: "supra-optic nucleus" EXACT [] synonym: "supraoptic nucleus of hypothalamus" EXACT [] synonym: "supraoptic nucleus proper (Lenhossek)" RELATED [NeuroNames:385] synonym: "supraoptic nucleus, general" RELATED [NeuroNames:385] synonym: "supraoptic nucleus, proper" RELATED [BAMS:SO] xref: BAMS:SO xref: BAMS:SON xref: BIRNLEX:1411 xref: BM:Die-Hy-SON xref: BTO:0002697 xref: DHBA:10481 xref: DMBA:15633 xref: EFO:0002476 xref: EMAPA:35843 xref: EV:0100227 xref: FMA:62317 xref: GAID:646 xref: HBA:12907 xref: MA:0000849 xref: MBA:390 xref: MESH:D013495 xref: neuronames:385 {source="BIRNLEX:1411"} xref: SCTID:369130007 xref: UMLS:C0038869 {source="BIRNLEX:1411"} xref: Wikipedia:Supraoptic_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 {source="ABA", source="MA"} ! periventricular zone of hypothalamus relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0001930 {source="ABA"} property_value: RO:0002171 UBERON:0001932 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001930 name: paraventricular nucleus of hypothalamus namespace: uberon def: "Nucleus in the anterior part of the hypothalamus. (MSH) * one of the magnocellular hypothalamic nuclei, an elongated plate of large, deeply staining cells located close to the third ventricle in the anterior hypothalamic area; major source of oxytocin and to a lesser extent, of antidiuretic hormone, neurohormones, which are carried to the neurohypophysis along the paraventriculohypophysial tract. (CSP)." [BIRNLEX:1407] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "filiform nucleus" EXACT [] synonym: "nuclei paraventriculares" RELATED OMO:0003011 [NeuroNames:387] synonym: "nuclei paraventricularis hypothalami" RELATED OMO:0003011 [Wikipedia:Paraventricular_nucleus_of_hypothalamus] synonym: "nucleus filiformis" RELATED OMO:0003011 [NeuroNames:387] synonym: "nucleus hypothalami filiformis" RELATED OMO:0003011 [NeuroNames:387] synonym: "nucleus hypothalami paraventricularis" RELATED OMO:0003011 [NeuroNames:387] synonym: "nucleus paraventricularis hypothalami" RELATED [BTO:0002476] synonym: "Pa" BROAD OMO:0003000 [BIRNLEX:1407, NIFSTD:NeuroNames_abbrevSource] synonym: "paraventricular hypothalamic nucleus" EXACT [] synonym: "paraventricular nucleus" EXACT [] synonym: "paraventricular nucleus hypothalamus (Malone)" RELATED [NeuroNames:387] synonym: "paraventricular nucleus of the hypothalamus" RELATED [NeuroNames:387] synonym: "parvocellular hypothalamic nucleus" RELATED [BAMS:PVH] synonym: "subcommissural nucleus (Ziehen)" RELATED [NeuroNames:387] xref: BAMS:Pa xref: BAMS:PAH xref: BAMS:PVH xref: BIRNLEX:1407 xref: BM:Die-Hy-PAH xref: BTO:0002476 xref: DHBA:10476 xref: EFO:0002469 xref: EMAPA:35665 xref: EV:0100229 xref: FMA:62320 xref: GAID:643 xref: HBA:12905 xref: MA:0000848 xref: MBA:38 xref: MESH:D010286 xref: neuronames:387 {source="BIRNLEX:1407"} xref: SCTID:369131006 xref: UMLS:C0030532 {source="BIRNLEX:1407"} xref: Wikipedia:Paraventricular_nucleus_of_hypothalamus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ef/PVNss.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0001929 {source="ABA"} property_value: RO:0002171 UBERON:0001932 {source="ABA"} [Term] id: UBERON:0001931 name: lateral preoptic nucleus namespace: uberon def: "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]." [Wikipedia:Preoptic_area#Lateral_preoptic_nucleus] subset: uberon_slim synonym: "area praeoptica lateralis" RELATED OMO:0003011 [NeuroNames:381] synonym: "area preoptica lateralis" RELATED OMO:0003011 [NeuroNames:381] synonym: "lateral preoptic area" EXACT [] synonym: "lateral preoptic hypothalamic nucleus" EXACT [] synonym: "LPO" BROAD OMO:0003000 [BIRNLEX:1722, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus praeopticus lateralis" RELATED OMO:0003011 [NeuroNames:381] synonym: "nucleus preopticus lateralis" RELATED OMO:0003011 [NeuroNames:381] xref: BAMS:LPO xref: BIRNLEX:1722 xref: BM:Die-Hy-LPO xref: BTO:0006166 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10471 xref: EMAPA:35483 xref: FMA:62326 xref: HBA:4552 xref: MA:0000835 xref: MBA:226 xref: neuronames:381 {source="BIRNLEX:1722"} xref: SCTID:369129002 xref: UMLS:C0175312 {source="BIRNLEX:1722"} xref: UMLS:C1289556 {source="BIRNLEX:1722"} xref: Wikipedia:Preoptic_area#Lateral_preoptic_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0001906 {source="ABA"} property_value: RO:0002171 UBERON:0001907 {source="ABA"} property_value: RO:0002171 UBERON:0001933 {source="ABA"} property_value: RO:0002171 UBERON:0002430 {source="ABA"} [Term] id: UBERON:0001932 name: arcuate nucleus of hypothalamus namespace: uberon def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus] subset: uberon_slim synonym: "ArcH" BROAD OMO:0003000 [BIRNLEX:1638, NIFSTD:NeuroNames_abbrevSource] synonym: "arcuate hypothalamic nucleus" EXACT [] synonym: "arcuate nucleus" EXACT [] synonym: "arcuate nucleus of the hypothalamus" RELATED [NeuroNames:395] synonym: "arcuate nucleus-2" EXACT [] synonym: "arcuate periventricular nucleus" EXACT [] synonym: "infundibular hypothalamic nucleus" EXACT [] synonym: "infundibular nucleus" EXACT [] synonym: "infundibular periventricular nucleus" EXACT [] synonym: "nucleus arcuatus" EXACT OMO:0003011 [FMA:62329, FMA:TA] synonym: "nucleus arcuatus (hypothalamus)" RELATED OMO:0003011 [NeuroNames:395] synonym: "nucleus arcuatus hypothalami" RELATED OMO:0003011 [Wikipedia:Arcuate_nucleus] synonym: "nucleus infundibularis" RELATED [BTO:0002473] synonym: "nucleus infundibularis hypothalami" RELATED OMO:0003011 [NeuroNames:395] synonym: "nucleus semilunaris" RELATED [BTO:0002473] xref: BAMS:Arc xref: BAMS:ArcH xref: BAMS:ARH xref: BIRNLEX:1638 xref: BM:HAr xref: BTO:0002473 xref: BTO:0005534 xref: DHBA:10492 xref: EMAPA:35142 xref: EV:0100230 xref: FMA:62329 xref: GAID:647 xref: HBA:12913 xref: MA:0000847 xref: MBA:223 xref: MESH:D001111 xref: NCIT:C52711 xref: neuronames:395 {source="BIRNLEX:1638"} xref: UMLS:C0003741 {source="BIRNLEX:1638", source="ncithesaurus:Arcuate_Nucleus"} xref: Wikipedia:Arcuate_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalamic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0001929 {source="ABA"} property_value: RO:0002171 UBERON:0001930 {source="ABA"} property_value: UBPROP:0000012 "the semantics of the BTO class arcuate nucleus are not clear" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0001933 name: retrochiasmatic area namespace: uberon synonym: "area retrochiasmatica" RELATED OMO:0003011 [NeuroNames:396] synonym: "nucleus supraopticus diffusus" RELATED OMO:0003011 [NeuroNames:396] synonym: "RCh" BROAD OMO:0003000 [BIRNLEX:1569, NIFSTD:NeuroNames_abbrevSource] synonym: "retrochiasmatic area" RELATED [NeuroNames:396] synonym: "retrochiasmatic hypothalamic area" RELATED [NeuroNames:396] synonym: "retrochiasmatic region" EXACT [] synonym: "supraoptic nucleus, tuberal part" RELATED [NeuroNames:396] xref: BAMS:RCH xref: BAMS:RCh xref: BIRNLEX:1569 xref: EMAPA:37732 {source="MA:th"} xref: FMA:62330 xref: MA:0000841 xref: MBA:173 xref: neuronames:396 {source="BIRNLEX:1569"} xref: UMLS:C0262326 {source="BIRNLEX:1569"} relationship: part_of UBERON:0002272 ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA", source="NIFSTD"} ! intermediate hypothalamic region property_value: RO:0002171 UBERON:0001906 {source="ABA"} property_value: RO:0002171 UBERON:0001907 {source="ABA"} property_value: RO:0002171 UBERON:0001931 {source="ABA"} property_value: RO:0002171 UBERON:0002430 {source="ABA"} [Term] id: UBERON:0001934 name: dorsomedial nucleus of hypothalamus namespace: uberon def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus] subset: uberon_slim synonym: "DMH" BROAD OMO:0003000 [BIRNLEX:1558, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsomedial hypothalamic nucleus" EXACT [] synonym: "dorsomedial nucleus" BROAD [] synonym: "dorsomedial nucleus hypothalamus" RELATED [NeuroNames:397] synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT [] synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT [] synonym: "dorsomedial nucleus of the hypothalamus" RELATED [NeuroNames:397] synonym: "nucleus dorsomedialis hypothalami" RELATED OMO:0003011 [NeuroNames:397] synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED OMO:0003011 [BTO:0002474, Wikipedia:Dorsomedial_hypothalamic_nucleus] synonym: "nucleus hypothalamicus dorsomedialis" RELATED OMO:0003011 [NeuroNames:397] xref: BAMS:DM xref: BAMS:DMH xref: BIRNLEX:1558 xref: BM:Die-Hy-DMH xref: BTO:0002474 xref: DHBA:10485 xref: EMAPA:35297 xref: EV:0100232 xref: FMA:62331 xref: GAID:648 xref: HBA:12914 xref: MA:0000838 xref: MBA:830 xref: MESH:D004302 xref: neuronames:397 {source="BIRNLEX:1558"} xref: SCTID:369134003 xref: UMLS:C0013055 {source="BIRNLEX:1558"} xref: Wikipedia:Dorsomedial_hypothalamic_nucleus is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0002034 {source="ABA"} property_value: RO:0002171 UBERON:0002219 {source="ABA"} property_value: RO:0002171 UBERON:0002625 {source="ABA"} property_value: RO:0002171 UBERON:0002689 {source="ABA"} property_value: RO:0002171 UBERON:0002690 {source="ABA"} property_value: RO:0002171 UBERON:0007626 {source="ABA"} [Term] id: UBERON:0001935 name: ventromedial nucleus of hypothalamus namespace: uberon def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Ventromedial_hypothalamic_nucleus] comment: part of tuberal area in MA subset: uberon_slim synonym: "nucleus hypothalamicus ventromedialis" RELATED OMO:0003011 [NeuroNames:398] synonym: "nucleus ventromedialis hypothalami" RELATED [BTO:0002472] synonym: "tuberal nucleus (Ganser)" RELATED [NeuroNames:398] synonym: "ventrolateral hypothalamic nucleus" RELATED [BTO:0002472] synonym: "ventrolateral nucleus of hypothalamus" RELATED [BTO:0002472] synonym: "ventromedial hypothalamic nucleus" EXACT [] synonym: "ventromedial nucleus hypothalamus" RELATED [NeuroNames:398] synonym: "ventromedial nucleus of hypothalamus." RELATED [BTO:0002472] synonym: "ventromedial nucleus of the hypothalamus" RELATED [NeuroNames:398] synonym: "VMH" BROAD OMO:0003000 [BIRNLEX:1572, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VMH xref: BIRNLEX:1572 xref: BM:VMH xref: BTO:0002472 xref: DHBA:10488 xref: DMBA:15675 xref: EMAPA:35916 xref: EV:0100233 xref: FMA:62332 xref: GAID:650 xref: HBA:12919 xref: MA:0000845 xref: MBA:693 xref: MESH:D014697 xref: neuronames:398 {source="BIRNLEX:1572"} xref: SCTID:369124007 xref: UMLS:C0042518 {source="BIRNLEX:1572"} xref: Wikipedia:Ventromedial_hypothalamic_nucleus is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0002035 {source="ABA"} property_value: RO:0002171 UBERON:0002206 {source="ABA"} property_value: RO:0002171 UBERON:0002634 {source="ABA"} property_value: RO:0002171 UBERON:0002706 {source="ABA"} [Term] id: UBERON:0001936 name: tuberomammillary nucleus namespace: uberon def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [Wikipedia:Tuberomammillary_nucleus] subset: uberon_slim synonym: "caudal magnocellular nucleus" EXACT [BIRNLEX:1271] synonym: "mammilloinfundibular nucleus" EXACT [FMA:62335] synonym: "mammiloinfundibular nucleus" EXACT [BIRNLEX:1271] synonym: "nucleus tuberomamillaris" RELATED OMO:0003011 [NeuroNames:427] synonym: "nucleus tuberomamillaris hypothalami" RELATED OMO:0003011 [NeuroNames:427] synonym: "TM" BROAD OMO:0003000 [BIRNLEX:1271, NIFSTD:NeuroNames_abbrevSource] synonym: "TM" RELATED OMO:0003000 [BIRNLEX:1271] synonym: "tubero-mamillary area" RELATED [NeuroNames:427] synonym: "tuberomamillary nucleus" RELATED OMO:0003002 [EV:0100237] synonym: "tuberomammillary hypothalamic nucleus" EXACT [BIRNLEX:1271] synonym: "tuberomammillary nucleus" EXACT [BIRNLEX:1271] synonym: "tuberomammillary nucleus, ventral part" RELATED [NeuroNames:427] synonym: "ventral tuberomammillary nucleus" RELATED [NeuroNames:427] xref: BAMS:TM xref: BIRNLEX:1271 xref: DHBA:10496 xref: EMAPA:35889 xref: EV:0100237 xref: FMA:62335 xref: HBA:12912 xref: MA:0000853 xref: MBA:557 xref: neuronames:427 {source="BIRNLEX:1271"} xref: SCTID:369122006 xref: UMLS:C0228377 {source="BIRNLEX:1271"} xref: UMLS:C1289549 {source="BIRNLEX:1271"} xref: Wikipedia:Tuberomammillary_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002206 {source="MA"} ! mammillary body relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area property_value: RO:0002171 UBERON:0001938 {source="ABA"} property_value: RO:0002171 UBERON:0001939 {source="ABA"} property_value: RO:0002171 UBERON:0001940 {source="ABA"} [Term] id: UBERON:0001937 name: lateral hypothalamic nucleus namespace: uberon def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating." [Wikipedia:Lateral_hypothalamus] subset: uberon_slim subset: vertebrate_core synonym: "areas of Economo" RELATED [NeuroNames:1347] synonym: "economo's areas" RELATED [NeuroNames:1347] synonym: "lateral hypothalamic nuclei" RELATED OMO:0003004 [ZFA:0000227] synonym: "LHy" BROAD OMO:0003000 [BIRNLEX:1199, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus hypothalamicus lateralis" EXACT OMO:0003011 [FMA:62337, FMA:TA] xref: BAMS:LHy xref: BIRNLEX:1199 xref: EV:0100234 xref: FMA:62337 xref: neuronames:1347 {source="BIRNLEX:1199"} xref: SCTID:360452004 xref: TAO:0000227 xref: UMLS:C0086527 {source="BIRNLEX:1199"} xref: Wikipedia:Lateral_hypothalamus xref: ZFA:0000227 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI [Term] id: UBERON:0001938 name: lateral mammillary nucleus namespace: uberon synonym: "lateral mamillary nucleus" RELATED [NeuroNames:413] synonym: "lateral mammillary hypothalamic nucleus" EXACT [] synonym: "lateral mammillary nucleus (Gudden)" RELATED [NeuroNames:413] synonym: "lateral nucleus of mammillary body" EXACT [] synonym: "LM" BROAD OMO:0003000 [BIRNLEX:1460, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis mamillaris lateralis" RELATED OMO:0003011 [NeuroNames:413] synonym: "nucleus intercalatus (Olszewski)" RELATED OMO:0003011 [NeuroNames:413] synonym: "nucleus lateralis corpus mamillaris" RELATED OMO:0003011 [NeuroNames:413] synonym: "nucleus mammillaris lateralis" EXACT OMO:0003011 [FMA:62341, FMA:TA] xref: BAMS:LM xref: BIRNLEX:1460 xref: BTO:0004009 xref: DHBA:10502 xref: DMBA:15734 xref: EMAPA:35481 xref: EV:0100239 xref: FMA:62341 xref: HBA:4675 xref: MA:0000850 xref: MBA:210 xref: neuronames:413 {source="BIRNLEX:1460"} xref: SCTID:369143007 xref: UMLS:C0152357 {source="BIRNLEX:1460"} xref: UMLS:C1289570 {source="BIRNLEX:1460"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002206 ! mammillary body property_value: RO:0002171 UBERON:0001936 {source="ABA"} property_value: RO:0002171 UBERON:0001939 {source="ABA"} property_value: RO:0002171 UBERON:0001940 {source="ABA"} [Term] id: UBERON:0001939 name: medial mammillary nucleus namespace: uberon synonym: "internal mammillary nucleus" EXACT [] synonym: "medial mamillary nucleus" RELATED [BAMS:MM] synonym: "medial mammillary nucleus, body" RELATED [BAMS:MM] synonym: "medial nucleus of mammillary body" EXACT [] synonym: "MM" BROAD OMO:0003000 [BIRNLEX:1299, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus mammillaris medialis" EXACT OMO:0003011 [FMA:62342, FMA:TA] synonym: "preoptic division" RELATED [NeuroNames:376] xref: BAMS:MM xref: BAMS:MMg xref: BIRNLEX:1299 xref: BTO:0004008 xref: DHBA:10499 xref: DMBA:15729 xref: EMAPA:35548 xref: EV:0100238 xref: FMA:62342 xref: HBA:4672 xref: MA:0000851 xref: MBA:491 xref: neuronames:376 {source="BIRNLEX:1299"} xref: SCTID:369141009 xref: UMLS:C0175329 {source="BIRNLEX:1299"} xref: UMLS:C1289568 {source="BIRNLEX:1299"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002206 ! mammillary body property_value: RO:0002171 UBERON:0001936 {source="ABA"} property_value: RO:0002171 UBERON:0001938 {source="ABA"} property_value: RO:0002171 UBERON:0001940 {source="ABA"} [Term] id: UBERON:0001940 name: supramammillary nucleus namespace: uberon synonym: "nuclei premamillaris" RELATED OMO:0003011 [NeuroNames:418] synonym: "nucleus premamillaris hypothalami" RELATED OMO:0003011 [NeuroNames:418] synonym: "premamillary nucleus" RELATED [NeuroNames:418] synonym: "SuM" BROAD OMO:0003000 [BIRNLEX:1479, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:SUM xref: BAMS:SuM xref: BIRNLEX:1479 xref: DHBA:10497 xref: EMAPA:35842 xref: FMA:62347 xref: HBA:12911 xref: MA:0000852 xref: MBA:525 xref: neuronames:418 {source="BIRNLEX:1479"} xref: SCTID:369144001 xref: UMLS:C0228378 {source="BIRNLEX:1479"} xref: UMLS:C1289571 {source="BIRNLEX:1479"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002206 ! mammillary body property_value: RO:0002171 UBERON:0001936 {source="ABA"} property_value: RO:0002171 UBERON:0001938 {source="ABA"} property_value: RO:0002171 UBERON:0001939 {source="ABA"} [Term] id: UBERON:0001941 name: lateral habenular nucleus namespace: uberon synonym: "lateral habenula" EXACT [] synonym: "lateral habenula (Nissl)" RELATED [NeuroNames:295] synonym: "LHb" BROAD OMO:0003000 [BIRNLEX:1438, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus habenulae lateralis" EXACT [BIRNLEX:1438] synonym: "nucleus habenularis lateralis" EXACT [BIRNLEX:1438] synonym: "nucleus habenularis lateralis epithalami" EXACT [BIRNLEX:1438] xref: BAMS:HL xref: BAMS:LH xref: BAMS:LHb xref: BIRNLEX:1438 xref: BM:Die-Epi-Hl xref: BTO:0002699 xref: DHBA:10453 xref: EMAPA:35479 xref: FMA:62372 xref: HBA:4524 xref: MA:0000831 xref: MBA:186 xref: neuronames:295 {source="BIRNLEX:1438"} xref: SCTID:361538005 xref: UMLS:C0228390 {source="BIRNLEX:1438"} is_a: UBERON:0008993 ! habenular nucleus relationship: part_of UBERON:0001904 ! habenula property_value: RO:0002171 UBERON:0001905 {source="ABA"} property_value: RO:0002171 UBERON:0001942 {source="ABA"} [Term] id: UBERON:0001942 name: medial habenular nucleus namespace: uberon def: "The habenular nuclei comprise a small group of nuclei that are part of the epithalamus of the diencephalon, situated at the posterior end of the thalamus, on its upper surface. The habenular nuclei are typically divided into: lateral habenular nucleus medial habenular nucleus The pineal gland is attached to the brain in this region. Nerve impulses from the habenular nuclei are transmitted to the septal nuclei via the stria medullaris, which is found on the medial surface of the thalamus." [Wikipedia:Habenular_nuclei] synonym: "ganglion intercrurale" RELATED OMO:0003011 [NeuroNames:294] synonym: "ganglion interpedunculare" RELATED OMO:0003011 [NeuroNames:294] synonym: "medial habenula" EXACT [] synonym: "MHb" BROAD OMO:0003000 [BIRNLEX:1431, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei habenulares" RELATED OMO:0003011 [NeuroNames:294] synonym: "nucleus habenulae medialis" EXACT [BIRNLEX:1431] synonym: "nucleus habenularis" RELATED OMO:0003011 [NeuroNames:294] synonym: "nucleus habenularis medialis" EXACT [BIRNLEX:1431] synonym: "nucleus habenularis medialis (Hassler)" EXACT [BIRNLEX:1431] synonym: "nucleus habenularis medialis epithalami" EXACT [BIRNLEX:1431] xref: BAMS:HM xref: BAMS:MH xref: BAMS:MHb xref: BIRNLEX:1431 xref: BM:Die-Epi-HM xref: BTO:0003686 xref: DHBA:10456 xref: DMBA:16388 xref: EMAPA:35547 xref: FMA:62373 xref: HBA:4523 xref: MA:0000832 xref: MBA:483 xref: neuronames:294 {source="BIRNLEX:1431"} xref: UMLS:C0228389 {source="BIRNLEX:1431"} xref: Wikipedia:Habenular_nuclei is_a: UBERON:0008993 ! habenular nucleus relationship: part_of UBERON:0001904 ! habenula property_value: RO:0002171 UBERON:0001905 {source="ABA"} property_value: RO:0002171 UBERON:0001941 {source="ABA"} [Term] id: UBERON:0001943 name: midbrain tegmentum namespace: uberon def: "Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]." [FMA:FMA, ISBN:0471888893, Wikipedia:Midbrain_tegmentum] comment: 'tegmentum' is used generically for the ventral part of the brainstem (ISBN:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "mesencephalic tegmentum" RELATED [VHOG:0001367] synonym: "MTg" BROAD OMO:0003000 [BIRNLEX:1200, NIFSTD:NeuroNames_abbrevSource] synonym: "tegmentum" BROAD [ISBN:0471888893] synonym: "tegmentum mesencephali" EXACT OMO:0003011 [Wikipedia:Midbrain_tegmentum] synonym: "tegmentum mesencephalicum" RELATED OMO:0003011 [NeuroNames:491] synonym: "tegmentum of midbrain" EXACT [] xref: BAMS:MTg xref: BIRNLEX:1200 xref: BTO:0003388 xref: DHBA:12195 xref: EFO:0000921 xref: EHDAA2:0004475 xref: EMAPA:18215 xref: FMA:62393 xref: HBA:9002 xref: MA:0000212 xref: MAT:0000452 xref: MESH:D013681 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:491 {source="BIRNLEX:1200"} xref: SCTID:362392007 xref: TAO:0000160 xref: UMLS:C0039441 {source="BIRNLEX:1200"} xref: VHOG:0001367 xref: Wikipedia:Midbrain_tegmentum xref: XAO:0004271 xref: ZFA:0000160 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0002298 ! brainstem property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "Together, our results reveal a shared basic organization in the tegmental domains of the diencephalon and midbrain of developing lamprey, indicating early appearance of the domain in vertebrate phylogeny.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001367", ontology="VHOG", source="DOI:10.1016/j.brainresbull.2005.05.001 Villar-Cheda B, Abalo XM, Anadon R, Rodicio MC, The tegmental proliferation region in the sea lamprey. Brain Research Bulletin (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001944 name: pretectal region namespace: uberon def: "Nuclear complex between dorsal thalamus and optic tectum whose nuclei receive afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "area praetectalis" RELATED OMO:0003011 [NeuroNames:467] synonym: "area pretectalis" EXACT OMO:0003011 [FMA:62402, FMA:TA] synonym: "nuclei pretectales" EXACT OMO:0003011 [FMA:62402, FMA:TA] synonym: "nucleus praetectalis" RELATED OMO:0003011 [NeuroNames:467] synonym: "praetectum" RELATED OMO:0003011 [NeuroNames:467] synonym: "pretectal area" EXACT [] synonym: "pretectal nuclei" EXACT [] synonym: "pretectum" EXACT [] synonym: "regio pretectalis" RELATED OMO:0003011 [NeuroNames:467] xref: BAMS:PRT xref: BAMS:PTc xref: BAMS:PTec xref: BIRNLEX:703 xref: BM:MB-Tec-PT xref: DHBA:12181 xref: DMBA:16510 xref: EMAPA:32778 xref: FMA:62402 xref: HBA:9079 xref: MA:0001062 xref: MBA:1100 xref: MESH:D066250 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:467 {source="BIRNLEX:703"} xref: NLX:59721 xref: SCTID:416333003 xref: TAO:0000418 xref: UMLS:C0175354 {source="BIRNLEX:703"} xref: Wikipedia:Pretectal_area xref: Wikipedia:Pretectum xref: XAO:0004303 xref: ZFA:0000418 is_a: UBERON:0003528 ! brain gray matter is_a: UBERON:0007245 {source="cjm"} ! nuclear complex of neuraxis relationship: part_of UBERON:0000955 ! brain property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A narrow, transversely oriented rostral zone of the mesencephalic tectum, bounded caudally by the superior colliculus, rostrally by the habenular trigone, and laterally by the pulvinar thalami; the pretectal area contains several nuclei that receive fibers from the optic tract; it has bilateral efferent connections with the Edinger-Westphal nucleus of the oculomotor nuclear complex by way of which it mediates the pupillary light refle[MP:0009637]x" xsd:string {source="MP:0009637"} property_value: UBPROP:0000001 "Region of brain lying between the midbrain tectum and the thalamus (Sefton and Dreher, in Paxinos, G The rat central nervous system, 1995, pg 859), Situated at the level of poterior commissure and just rostral to the superior colliculus (Brodal, Neurological Anatomy, 3rd ed, 1981, pg 542)" xsd:string {source="NLX:59721"} property_value: UBPROP:0000008 "in monotremes, undifferentiated and possesses only a single nucleus[ISBN:0471888893]" xsd:string property_value: UBPROP:0000008 "teleost fishes exhibit hypertrophy of the pretectum[ISBN:0471888893]" xsd:string property_value: UBPROP:0000008 "within the amniotes, this region is smaller in mammals[ISBN:0471888893]" xsd:string property_value: UBPROP:0000009 "It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex" xsd:string property_value: UBPROP:0000012 "part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP)" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0001945 name: superior colliculus namespace: uberon def: "Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM)." [BIRNLEX:1040] comment: ). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior colliculus" EXACT [] synonym: "anterior corpus quadrigeminum" EXACT [] synonym: "colliculus bigeminalis oralis" RELATED OMO:0003011 [NeuroNames:473] synonym: "colliculus cranialis" RELATED OMO:0003011 [NeuroNames:473] synonym: "colliculus rostralis" RELATED OMO:0003011 [NeuroNames:473] synonym: "colliculus superior" RELATED OMO:0003011 [NeuroNames:473] synonym: "corpora bigemina" RELATED [] synonym: "corpus quadrigeminum superius" RELATED OMO:0003011 [NeuroNames:473] synonym: "cranial colliculus" EXACT [] synonym: "dorsal midbrain" RELATED [] synonym: "layers of the superior colliculus" RELATED [NeuroNames:473] synonym: "lobus opticus" RELATED [BTO:0000965] synonym: "nates" RELATED OMO:0003011 [NeuroNames:473] synonym: "optic lobe" RELATED [] synonym: "optic tectum" EXACT SENSU [NCBITaxon:32443, NCBITaxon:7777, Wikipedia:Superior_colliculus, ZFA:0000445] synonym: "optic tectum" RELATED [] synonym: "strata (grisea et alba) colliculi cranialis" RELATED OMO:0003011 [NeuroNames:473] synonym: "strata (grisea et alba) colliculi superioris" RELATED OMO:0003011 [NeuroNames:473] synonym: "tectal lobe" RELATED [] synonym: "tectum" RELATED [] synonym: "tectum opticum" RELATED [] xref: AAO:0010609 xref: BAMS:SC xref: BIRNLEX:1040 xref: BM:MB-Tec-SC xref: BTO:0000965 xref: DHBA:12292 xref: DMBA:16678 xref: EFO:0002474 xref: EMAPA:32869 xref: EV:0100245 xref: FMA:62403 xref: GAID:576 xref: HBA:9114 xref: MA:0001068 xref: MESH:D013477 xref: neuronames:473 {source="BIRNLEX:1040"} xref: TAO:0000445 xref: UMLS:C0228405 {source="BIRNLEX:1040"} xref: Wikipedia:Superior_colliculus xref: XAO:0003226 xref: ZFA:0000445 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: part_of UBERON:0002314 ! midbrain tectum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010609", ontology="AAO", source="PMID:17952453"} property_value: UBPROP:0000001 "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000445", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]" xsd:string property_value: UBPROP:0000008 "The term SC is used when discussing mammals, and OT for other vertebrates[WP]" xsd:string [Term] id: UBERON:0001946 name: inferior colliculus namespace: uberon def: "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM)." [BIRNLEX:806] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "caudal colliculus" EXACT [] synonym: "colliculus caudalis" RELATED OMO:0003011 [NeuroNames:476] synonym: "colliculus inferior" RELATED OMO:0003011 [Wikipedia:Inferior_colliculus] synonym: "corpus bigeminalis caudalis" RELATED OMO:0003011 [NeuroNames:476] synonym: "corpus bigeminum posterioris" RELATED OMO:0003011 [NeuroNames:476] synonym: "corpus quadrigeminum inferius" RELATED OMO:0003011 [NeuroNames:476] synonym: "inferior colliculi" EXACT OMO:0003004 [EV:0100246] synonym: "posterior colliculus" EXACT [] synonym: "posterior corpus quadrigeminum" EXACT [] xref: BAMS:IC xref: BIRNLEX:806 xref: DHBA:12305 xref: DMBA:16692 xref: EFO:0002465 xref: EMAPA:32870 xref: EV:0100246 xref: FMA:62404 xref: GAID:575 xref: HBA:9102 xref: MA:0001067 xref: MBA:4 xref: MESH:D007245 xref: neuronames:476 {source="BIRNLEX:806"} xref: UMLS:C0228411 {source="BIRNLEX:806"} xref: Wikipedia:Inferior_colliculus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: part_of UBERON:0002314 ! midbrain tectum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001947 name: red nucleus namespace: uberon def: "Large round nucleus located in the midbrain tegmentum, consisting of a magnocellular and parvicellular portion in most species studied." [BIRNLEX:1478] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus rotundus subthalamo-peduncularis" RELATED OMO:0003011 [NeuroNames:505] synonym: "nucleus ruber" EXACT OMO:0003011 [TAO:0000552] synonym: "nucleus ruber" RELATED OMO:0003011 [Wikipedia:Red_nucleus] synonym: "nucleus ruber tegmenti" RELATED OMO:0003011 [MP:MP] synonym: "nucleus ruber tegmenti (Stilling)" RELATED OMO:0003011 [NeuroNames:505] synonym: "R" BROAD OMO:0003000 [BIRNLEX:1478, NIFSTD:NeuroNames_abbrevSource] synonym: "red nucleus (Burdach)" RELATED [NeuroNames:505] xref: BAMS:R xref: BAMS:RN xref: BIRNLEX:1478 xref: BM:MB-RN xref: BTO:0006329 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12247 xref: EHDAA2:0004706 xref: EMAPA:35724 xref: EV:0100248 xref: FMA:62407 xref: GAID:586 xref: HBA:9053 xref: MA:0001063 xref: MBA:214 xref: MESH:D012012 xref: neuronames:505 {source="BIRNLEX:1478"} xref: SCTID:279287006 xref: TAO:0000552 xref: UMLS:C0034910 {source="BIRNLEX:1478"} xref: Wikipedia:Red_nucleus xref: ZFA:0000552 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000009 "in animals without a significant corticospinal tract, gait is mainly controlled by the red nucleus." xsd:string [Term] id: UBERON:0001948 name: regional part of spinal cord namespace: uberon def: "A multi-tissue structure that is part of a spinal cord." [OBOL:automatic] subset: non_informative synonym: "spinal cord part" RELATED [] xref: BIRNLEX:1496 xref: NCIT:C33969 xref: SCTID:244437008 xref: UMLS:C1268166 {source="ncithesaurus:Spinal_Cord_Part"} is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0001950 name: neocortex namespace: uberon def: "An area of cerebral cortex defined on the basis of cytoarchitecture that have six layers. Starting from the cortical surface the layers are: molecular layer (I), external granular layer (II), external pyramidal layer (III), internal granular layer (IV), internal pyramidal layer (V), and multiform layer (VI). Neocortex is most prominent in the frontal lobe, the parietal lobe, the temporal lobe and the occipital lobe, less so in the cingulate gyrus, the parahippocampal gyrus and the insula. It is composed of two subdivisions: true isocortex and proisocortex (Carpenter-83)(NN)." [BIRNLEX:2547, OldNeuroNames:754] subset: pheno_slim subset: uberon_slim synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN:0471888893] synonym: "homotypical cortex" EXACT [BIRNLEX:2547] synonym: "iso-cortex" RELATED [BAMS:iso-cortex] synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neocortex (isocortex)" EXACT [DHBA:10160] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] synonym: "nonolfactory cortex" RELATED [BTO:0000920] synonym: "nucleus hypoglossalis" RELATED OMO:0003011 [NeuroNames:757] xref: BAMS:ISO xref: BAMS:Iso-cortex xref: BAMS:NCX xref: BIRNLEX:2547 xref: BTO:0000920 xref: DHBA:10160 xref: EHDAA2:0004662 xref: EMAPA:32842 xref: EMAPA:35589 xref: FMA:62429 xref: GAID:677 xref: MA:0002754 xref: MBA:315 xref: MESH:D019579 xref: neuronames:757 {source="BIRNLEX:2547"} xref: PBA:294021746 xref: UMLS:C0175173 {source="BIRNLEX:2547"} xref: Wikipedia:Neocortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0002264 {source="ABA"} property_value: UBPROP:0000003 "The 6-layer neocortex is well conserved in all extant mammals, but not present in birds or reptils" xsd:string {source="PMID:23027930"} [Term] id: UBERON:0001953 name: presubiculum namespace: uberon def: "A modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus." [http://medical-dictionary.thefreedictionary.com/presubiculum] synonym: "area 27 of Brodmann" RELATED INCONSISTENT [FMA:62486] synonym: "praesubiculum" RELATED OMO:0003011 [NeuroNames:167] synonym: "presubicular cortex (presubiculum)" EXACT [DHBA:10315] synonym: "presubiculum (Cajal)" EXACT [BIRNLEX:1108] xref: BAMS:PRE xref: BAMS:PRS xref: BAMS:PrS xref: BIRNLEX:1108 xref: BM:Tel-Cx-PSB xref: DHBA:10315 xref: DMBA:16172 xref: EMAPA:35703 xref: FMA:62486 xref: HBA:4252 xref: MA:0000923 xref: MBA:1084 xref: neuronames:167 {source="BIRNLEX:1108"} xref: UMLS:C0175194 {source="BIRNLEX:1108"} relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png" xsd:anyURI property_value: IAO:0000116 "consider merging with BA27" xsd:string property_value: RO:0002171 UBERON:0002191 {source="ABA"} property_value: RO:0002171 UBERON:0002728 {source="ABA"} property_value: RO:0002171 UBERON:0004683 {source="ABA"} [Term] id: UBERON:0001954 name: Ammon's horn namespace: uberon alt_id: UBERON:0003940 alt_id: UBERON:0004165 def: "A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum." [BIRNLEX:721] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "ammon gyrus" EXACT [GO:0021541] synonym: "ammon horn" EXACT [BIRNLEX:721] synonym: "Ammon horn fields" RELATED [BAMS:CA] synonym: "Ammon's horn" EXACT [GO:0021541] synonym: "Ammons horn" RELATED [BTO:0003705] synonym: "cornu ammonis" RELATED [GO:0021541] synonym: "hippocampus" RELATED [MA:0000191] synonym: "hippocampus major" EXACT [] synonym: "hippocampus proper" EXACT [BIRNLEX:721] synonym: "hippocampus proprius" EXACT OMO:0003011 [FMA:62493, FMA:TA] xref: BAMS:CA xref: BIRNLEX:721 xref: BM:Tel-CAM xref: BTO:0003705 xref: CALOHA:TS-0460 xref: DHBA:10296 xref: DMBA:16124 xref: EFO:0000530 xref: EHDAA2:0004443 xref: EMAPA:32845 xref: EV:0100180 xref: FMA:62493 xref: GAID:623 xref: http://scalablebrainatlas.incf.org/services/thumbnail.php?template=ABA07&size=L&dim=2d3d&format=png®ion=CA xref: MA:0000191 xref: MAT:0000114 xref: MBA:375 xref: MESH:D006624 xref: MIAA:0000114 xref: NCIT:C12444 xref: NCIT:C32374 xref: neuronames:3157 xref: PBA:128012244 xref: SCTID:361561007 xref: UMLS:C0019564 {source="BIRNLEX:721", source="ncithesaurus:Hippocampus"} xref: VHOG:0001177 xref: Wikipedia:Hippocampus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray739-emphasizing-hippocampus.png" xsd:anyURI property_value: RO:0002171 UBERON:0001885 {source="ABA"} property_value: RO:0002171 UBERON:0002601 {source="ABA"} property_value: UBPROP:0000007 "hippocampal" xsd:string property_value: UBPROP:0000012 "Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish. The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the 'avian hippocampus'. The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa. One of the consequences of this is that the medial pallium ('hippocampal' zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming 'cognitive maps' of the areas they inhabit.[WP]" xsd:string [Term] id: UBERON:0001964 name: least splanchnic nerve namespace: uberon def: "A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia." [Wikipedia:Thoracic_splanchnic_nerves#cite_note-4] subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "least thoracic splanchnic nerve" EXACT [FMA:6283] synonym: "lowest splanchnic nerve" EXACT [FMA:6283] synonym: "nervus splanchnicus imus" EXACT OMO:0003011 [FMA:6283, FMA:TA] synonym: "ramus renalis nervus splanchnici minoris" EXACT OMO:0003011 [FMA:6283, FMA:TA] synonym: "renal branch of lesser splanchnic nerve" EXACT [FMA:6283] synonym: "renal nerve" EXACT [FMA:6283] synonym: "thoracic splanchnic nerve" RELATED [] xref: EMAPA:29691 xref: FMA:6283 xref: MA:0002635 xref: SCTID:280506004 xref: Wikipedia:Thoracic_splanchnic_nerves#cite_note-4 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "in MA this is part of the kidney but this leads to unsatisfiability" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001965 name: substantia nigra pars compacta namespace: uberon def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)." [BIRNLEX:990] subset: pheno_slim subset: uberon_slim synonym: "compact part of substantia nigra" EXACT [] synonym: "nucleus substantiae nigrae, pars compacta" RELATED OMO:0003011 [NeuroNames:537] synonym: "pars compacta" EXACT [] synonym: "pars compacta of substantia nigra" RELATED [NeuroNames:537] synonym: "pars compacta substantiae nigrae" EXACT OMO:0003011 [FMA:62907, FMA:TA] synonym: "SNC" BROAD OMO:0003000 [BIRNLEX:990, NIFSTD:NeuroNames_abbrevSource] synonym: "SNpc" EXACT [] synonym: "substantia nigra compact part" EXACT [BIRNLEX:990] synonym: "substantia nigra compacta" EXACT [BIRNLEX:990] synonym: "substantia nigra, compact division" RELATED [BAMS:SNC] synonym: "substantia nigra, compact part" EXACT [] synonym: "substantia nigra, pars compacta" RELATED OMO:0003011 [NeuroNames:537] xref: BAMS:SNC xref: BAMS:SNc xref: BIRNLEX:990 xref: BM:MB-SNc xref: BTO:0003749 xref: DHBA:12252 xref: EMAPA:35836 xref: FMA:62907 xref: HBA:9074 xref: MA:0001064 xref: MBA:374 xref: MESH:D065842 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C97341 xref: neuronames:537 {source="BIRNLEX:990"} xref: UMLS:C0175412 {source="BIRNLEX:990", source="ncithesaurus:Pars_Compacta"} xref: Wikipedia:Substantia_nigra_pars_compacta relationship: part_of UBERON:0002038 ! substantia nigra property_value: RO:0002171 UBERON:0002142 {source="ABA"} property_value: RO:0002171 UBERON:0007412 {source="ABA"} [Term] id: UBERON:0001966 name: substantia nigra pars reticulata namespace: uberon def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)." [BIRNLEX:968] comment: the cells of pars reticulata bear a strong structural and functional resemblance to the inner segment of the globus pallidus subset: pheno_slim subset: uberon_slim synonym: "nucleus substantiae nigrae, pars compacta" RELATED OMO:0003011 [NeuroNames:537] synonym: "nucleus substantiae nigrae, pars reticularis" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "pars compacta of substantia nigra" RELATED [NeuroNames:537] synonym: "pars reticularis" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "pars reticularis substantiae nigrae" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "pars reticulata" EXACT [] synonym: "reticular part of substantia nigra" EXACT [] synonym: "SNPR" BROAD OMO:0003000 [MP:0000836] synonym: "SNR" BROAD OMO:0003000 [BIRNLEX:968, NIFSTD:NeuroNames_abbrevSource] synonym: "substantia nigra reticular part" RELATED [BAMS:SNR, BAMS:SNr] synonym: "substantia nigra, pars compacta" RELATED OMO:0003011 [NeuroNames:537] synonym: "substantia nigra, pars diffusa" EXACT OMO:0003011 [FMA:62908, FMA:TA] synonym: "substantia nigra, pars reticulata" RELATED [BAMS:SNR] synonym: "substantia nigra, reticular division" RELATED [BAMS:SNR] synonym: "substantia nigra, reticular part" EXACT [] xref: BAMS:SNR xref: BAMS:SNr xref: BIRNLEX:968 xref: BM:MB-SNr xref: BTO:0003750 xref: DHBA:12259 xref: EMAPA:35838 xref: FMA:62908 xref: HBA:9075 xref: MA:0001066 xref: MBA:381 xref: MESH:D065841 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:537 {source="BIRNLEX:968"} xref: UMLS:C0175413 {source="BIRNLEX:968"} xref: Wikipedia:Pars_reticulata relationship: part_of UBERON:0002038 ! substantia nigra property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} [Term] id: UBERON:0001989 name: superior cervical ganglion namespace: uberon def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglion cervicale superius" RELATED OMO:0003011 [BTO:0001325, Wikipedia:Superior_cervical_ganglion] synonym: "SCG" RELATED OMO:0003000 [ZFA:0001572] synonym: "superior cervical sympathetic ganglion" EXACT [] synonym: "superior sympathetic cervical ganglion" RELATED [] xref: BAMS:GSC xref: BAMS:SCGn xref: BTO:0001325 xref: EFO:0001945 xref: EHDAA:8943 xref: EMAPA:18441 xref: FMA:6467 xref: GAID:712 xref: MA:0001156 xref: MESH:D017783 xref: NCIT:C92213 xref: RETIRED_EHDAA2:0001946 xref: SCTID:279278002 xref: TAO:0001572 xref: UMLS:C0206257 {source="ncithesaurus:Superior_Cervical_Ganglion"} xref: Wikipedia:Superior_cervical_ganglion xref: ZFA:0001572 is_a: UBERON:0001991 ! cervical ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001990 name: middle cervical ganglion namespace: uberon def: "The small ganglion located at the level of the cricoid cartilage of the laryngeal wall." [ISBN:0-683-40008-8, MP:0001016] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ganglion cervicale medium" RELATED OMO:0003011 [BTO:0000359, Wikipedia:Middle_cervical_ganglion] synonym: "middle cervical sympathetic ganglion" EXACT [] xref: BAMS:GMC xref: BTO:0000359 xref: EHDAA:8941 xref: EMAPA:18440 xref: FMA:6468 xref: MA:0001155 xref: NCIT:C92212 xref: RETIRED_EHDAA2:0001180 xref: SCTID:279279005 xref: UMLS:C0228999 {source="ncithesaurus:Middle_Cervical_Ganglion"} xref: Wikipedia:Middle_cervical_ganglion is_a: UBERON:0001991 ! cervical ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001991 name: cervical ganglion namespace: uberon def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]." [Wikipedia:Cervical_ganglion] subset: human_reference_atlas subset: uberon_slim synonym: "cervical sympathetic ganglion" EXACT [] xref: BTO:0000113 xref: EMAPA:18438 xref: FMA:6470 xref: MA:0001153 xref: SCTID:181100007 xref: Wikipedia:Cervical_ganglion is_a: UBERON:0001807 ! paravertebral ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001997 name: olfactory epithelium namespace: uberon alt_id: UBERON:0004853 def: "A sensory epithelium inside the nasal cavity that is responsible for detecting odors[WP]." [Wikipedia:Olfactory_epithelium] comment: Genes: V1Rs, Trpc2 present in lamprey subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "main olfactory epithelium" EXACT [NCBIBook:NBK55971] synonym: "MOE" RELATED OMO:0003000 [NCBIBook:NBK55971] synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325] synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] synonym: "olfactory membrane" EXACT [BIRNLEX:2703] synonym: "olfactory sensory epithelium" EXACT [] synonym: "pseudostratified main olfactory epithelium" RELATED [http://www.ncbi.nlm.nih.gov/books/NBK55971/] synonym: "sensory olfactory epithelium" EXACT [] xref: AAO:0010158 xref: BIRNLEX:2703 xref: BTO:0000108 xref: CALOHA:TS-0703 xref: EFO:0001972 xref: EHDAA2:0001228 xref: EHDAA:4774 xref: EMAPA:17606 xref: FMA:64803 xref: MA:0001325 xref: MAT:0000445 xref: NCIT:C33203 xref: neuronames:1900 {source="BIRNLEX:2703"} xref: SCTID:37623003 xref: TAO:0000554 xref: UMLS:C0599332 {source="BIRNLEX:2703", source="ncithesaurus:Olfactory_Epithelium"} xref: VHOG:0000985 xref: Wikipedia:Olfactory_epithelium xref: ZFA:0000554 is_a: UBERON:0006934 ! sensory epithelium relationship: part_of UBERON:0000012 {source="NIFSTD"} ! somatic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png" xsd:anyURI property_value: UBPROP:0000001 "Sensory lining of the medial wall, roof and anterior aspects of the main olfactory cavity (cavum principale).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000002 "relationship loss: part_of principal cavity (AAO:0000992)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO"} [Term] id: UBERON:0002004 name: trunk of sciatic nerve namespace: uberon synonym: "sciatic nerve trunk" EXACT [] synonym: "sciatic neural trunk" EXACT [] xref: FMA:65507 xref: MA:0001178 is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0001322 ! sciatic nerve [Term] id: UBERON:0002005 name: enteric nervous system namespace: uberon def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [GO:0048484] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "enteric PNS" EXACT [EFO:0000895] synonym: "PNS - enteric" EXACT [EFO:0000895] xref: BAMS:ENS xref: BIRNLEX:1166 xref: BTO:0002506 xref: CALOHA:TS-2093 xref: EFO:0000895 xref: EHDAA2:0004202 xref: EMAPA:26922 xref: FMA:66070 xref: GAID:799 xref: MA:0000222 xref: MAT:0000102 xref: MESH:D017615 xref: MIAA:0000102 xref: TAO:0001155 xref: UMLS:C0206111 {source="BIRNLEX:1166"} xref: Wikipedia:Enteric_nervous_system xref: ZFA:0001155 relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="NIF", source="ZFA-isa-changed"} ! autonomic nervous system property_value: UBPROP:0000012 "most sources classify this as autonomic, but in FMA it is placed directly under nervous system." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002008 name: cardiac nerve plexus namespace: uberon def: "A plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus] subset: uberon_slim synonym: "autonomic nerve plexus of heart" EXACT [OBOL:automatic] synonym: "autonomic plexus of heart" EXACT [OBOL:automatic] synonym: "cardiac plexus" EXACT [] synonym: "heart autonomic nerve plexus" EXACT [OBOL:automatic] synonym: "heart autonomic plexus" EXACT [OBOL:automatic] synonym: "plexus cardiacus" EXACT OMO:0003011 [Wikipedia:Cardiac_plexus] xref: EMAPA:37460 {source="MA:th"} xref: FMA:6628 xref: MA:0001138 xref: NCIT:C52833 xref: SCTID:280511002 xref: UMLS:C0459528 {source="ncithesaurus:Cardiac_Nerve_Plexus"} xref: Wikipedia:Cardiac_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001816 ! autonomic nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI [Term] id: UBERON:0002009 name: pulmonary nerve plexus namespace: uberon def: "The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk that supplies the Bronchial tree. [WP,modified]." [Wikipedia:Pulmonary_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "plexus pulmonalis" EXACT OMO:0003011 [FMA:6629, FMA:TA] synonym: "plexus pulmonalis" RELATED OMO:0003011 [Wikipedia:Pulmonary_plexus] synonym: "pulmonary plexus" EXACT [FMA:6629] xref: EMAPA:37462 {source="MA:th"} xref: FMA:6629 xref: MA:0001143 xref: SCTID:280512009 xref: Wikipedia:Pulmonary_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0001759 ! vagus nerve property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-6677-8489 property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002010 name: celiac nerve plexus namespace: uberon def: "A complex network of nerves located in the abdomen behind the stomach. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]." [Wikipedia:Celiac_plexus] subset: uberon_slim synonym: "celiac plexus" EXACT [] synonym: "coeliac nerve plexus" RELATED [] synonym: "coeliac plexus" EXACT [] synonym: "plexus coeliacus" EXACT OMO:0003011 [FMA:6630, FMA:TA] synonym: "plexus coeliacus" RELATED OMO:0003011 [Wikipedia:Celiac_plexus] synonym: "plexus nervosus coeliacus" EXACT OMO:0003011 [FMA:6630, FMA:TA] synonym: "solar plexus" RELATED [MESH:A08.800.050.050.150] xref: EMAPA:37461 {source="MA:th"} xref: FMA:6630 xref: GAID:796 xref: MA:0001139 xref: MESH:D002447 xref: SCTID:362494009 xref: Wikipedia:Celiac_plexus is_a: UBERON:0001816 ! autonomic nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI [Term] id: UBERON:0002013 name: superior hypogastric nerve plexus namespace: uberon def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "hypogastric plexus" RELATED [] synonym: "nervus presacralis" EXACT OMO:0003011 [FMA:6642, FMA:TA] synonym: "plexus hypogastricus inferior" RELATED OMO:0003011 [Wikipedia:Superior_hypogastric_plexus] synonym: "plexus hypogastricus superior" EXACT OMO:0003011 [FMA:6642, FMA:TA] synonym: "presacral nerve" EXACT [] synonym: "superior hypogastric plexus" EXACT [] xref: EMAPA:19274 xref: FMA:6642 xref: MA:0001142 xref: SCTID:244484008 xref: Wikipedia:Superior_hypogastric_plexus is_a: UBERON:0001816 ! autonomic nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: IAO:0000116 "check relationship with generic hypogastric nerve/plexus" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002014 name: inferior hypogastric nerve plexus namespace: uberon def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "inferior hypogastric plexus" EXACT [] synonym: "pelvic nerve plexus" EXACT [] synonym: "pelvic plexus" EXACT [] synonym: "plexus hypogastricus inferior" EXACT OMO:0003011 [FMA:6643, FMA:TA] synonym: "plexus hypogastricus inferior" RELATED OMO:0003011 [Wikipedia:Inferior_hypogastric_plexus] synonym: "plexus nervosus hypogastricus inferior" EXACT OMO:0003011 [FMA:6643, FMA:TA] synonym: "plexus nervosus pelvicus" EXACT OMO:0003011 [FMA:6643, FMA:TA] synonym: "plexus pelvicus" EXACT OMO:0003011 [FMA:6643, FMA:TA] xref: EMAPA:19275 xref: FMA:6643 xref: MA:0001141 xref: NCIT:C52721 xref: SCTID:192608000 xref: UMLS:C0205797 {source="ncithesaurus:Inferior_Hypogastric_Nerve_Plexus"} xref: Wikipedia:Inferior_hypogastric_plexus is_a: UBERON:0001816 ! autonomic nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: IAO:0000116 "check relationship with generic hypogastric nerve/plexus" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002019 name: accessory XI nerve namespace: uberon def: "A cranial nerve that originates from neurons in the medulla and in the cervical spinal cord." [BIRNLEX:812, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "accessory nerve" EXACT [] synonym: "accessory nerve [XI]" EXACT [] synonym: "accessory spinal nerve" RELATED [BAMS:XIn] synonym: "accessory XI" EXACT [EHDAA2:0000106] synonym: "accessory XI nerve" EXACT [] synonym: "cervical accessory nerve" EXACT [] synonym: "CN-XI" RELATED [VHOG:0000699] synonym: "cranial nerve XI" EXACT [BIRNLEX:812] synonym: "eleventh cranial nerve" EXACT [BIRNLEX:812] synonym: "nervus accessorius [XI]" EXACT OMO:0003011 [FMA:6720, FMA:TA] synonym: "pars spinalis nervus accessorius" EXACT OMO:0003011 [FMA:6720, FMA:TA] synonym: "radix spinalis nervus accessorius" EXACT OMO:0003011 [FMA:6720, FMA:TA] synonym: "spinal accessory nerve" EXACT [FMA:6720] synonym: "spinal accessory nerve tree" EXACT [] synonym: "spinal part of accessory nerve" EXACT [] synonym: "Willis' nerve" EXACT [] xref: AAO:0010476 xref: BAMS:11n xref: BAMS:XIn xref: BIRNLEX:812 xref: EHDAA2:0000106 xref: EHDAA:2855 xref: EMAPA:17265 xref: FMA:6720 xref: FMA:80284 xref: GAID:825 xref: HBA:9340 xref: MA:0001088 xref: MBA:717 xref: MESH:D000055 xref: NCIT:C32041 xref: neuronames:2085 xref: SCTID:362469008 xref: UMLS:C0000905 {source="ncithesaurus:Accessory_Nerve", source="BIRNLEX:812"} xref: UMLS:C1305777 {source="BIRNLEX:812"} xref: VHOG:0000699 xref: Wikipedia:Spinal_accessory_nerve xref: XAO:0004214 is_a: UBERON:0035642 ! laryngeal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: RO:0002174 NCBITaxon:8292 {source="VHOG", source="Wikipedia", seeAlso="http://code.google.com/p/xenopus-anatomy-ontology/issues/detail?id=7"} property_value: UBPROP:0000001 "A small motor nerve which emerges from the lateral wall of the medulla with the roots of the vagus nerve, and innervates a single pectoral suspensory muscle, the m.cucullaris." xsd:string {source="ISBN:080184780X", source="XAO:0004214"} property_value: UBPROP:0000001 "Cranial nerve that innervates the sternocleidomastoid and trapezius complex of muscles. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-1, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000699", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000001 "Small motor nerve which innervates a single pectoral suspensory muscle, the m. cucullaris.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010476", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000699", ontology="VHOG", source="Wikipedia:Cranial_nerves", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve" xsd:string {source="GO"} property_value: UBPROP:0000012 "FMA has distinct cranial and spinal parts - WP says 'Traditional descriptions of the accessory nerve divide it into two parts: a spinal part and a cranial part.[1] However, because the cranial component rapidly joins the vagus nerve, becoming an integral part of said nerve, modern descriptions often consider the cranial component to be part of the vagus nerve and not part of the accessory nerve proper.[2]" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002020 name: gray matter namespace: uberon def: "A nervous system structure composed primarily of nerve cell bodies (somas). May also include dendrites and the initial unmyelinated portion of axons." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Gray_matter] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "gray mater" RELATED [ZFA:0001681] synonym: "gray matter" EXACT [] synonym: "gray matter of neuraxis" EXACT [FMA:67242] synonym: "grey matter" EXACT [] synonym: "grey matter of neuraxis" EXACT [] synonym: "grey substance" EXACT [] synonym: "grisea" RELATED OMO:0003011 [] synonym: "neuronal grey matter" EXACT [AEO:0001012] synonym: "substantia grisea" EXACT OMO:0003011 [FMA:67242, FMA:TA] xref: AEO:0001012 xref: EHDAA2:0003136 xref: EHDAA2_RETIRED:0004658 xref: EMAPA:37596 {source="MA:th"} xref: FMA:67242 xref: HBA:4006 xref: MA:0001112 xref: MESH:D066128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32695 xref: neuronames:2869 xref: TAO:0002197 xref: UMLS:C0018220 {source="ncithesaurus:Gray_Matter"} xref: VHOG:0001768 xref: Wikipedia:Gray_matter xref: ZFA:0001681 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001017 ! central nervous system property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002197", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0002021 name: occipital lobe namespace: uberon def: "Posterior part of the cerebral hemisphere (MSH)." [BIRNLEX:1136] comment: In some species, parcellations of lobes are not well defined or at all, and therefore the occipital lobe could refer to the most posterior mammalian cerebral cortex. subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "lobus occipitalis" RELATED OMO:0003011 [Wikipedia:Occipital_lobe] synonym: "regio occipitalis" EXACT OMO:0003011 [FMA:67325, FMA:TA] xref: BAMS:Occipital_lobe xref: BAMS:OL xref: BIRNLEX:1136 xref: BTO:0000293 xref: CALOHA:TS-0693 xref: DHBA:12148 xref: EFO:0000915 xref: EV:0100170 xref: FMA:67325 xref: GAID:678 xref: HBA:4180 xref: MAT:0000507 xref: MESH:D009778 xref: NCIT:C12355 xref: neuronames:140 {source="BIRNLEX:1136"} xref: SCTID:180923002 xref: UMLS:C0028785 {source="BIRNLEX:1136", source="ncithesaurus:Occipital_Lobe"} xref: Wikipedia:Occipital_lobe is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray727_occipital_lobe.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002022 name: insula namespace: uberon alt_id: UBERON:0023846 def: "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16." [BIRNLEX:1117] subset: human_reference_atlas subset: uberon_slim synonym: "central lobe" EXACT [FMA:67329] synonym: "cortex insularis" RELATED OMO:0003011 [NeuroNames:111] synonym: "cortex of island" EXACT [FMA:67329] synonym: "iNS" BROAD OMO:0003000 [FMA:67329, FMA:CMA] synonym: "insula cerebri" RELATED OMO:0003011 [NeuroNames:111] synonym: "insula lobule" EXACT [FMA:67329] synonym: "insula of Reil" RELATED [NeuroNames:111] synonym: "insula Reilii" RELATED OMO:0003011 [NeuroNames:111] synonym: "insular cortex" NARROW [BIRNLEX:1117, FMA:67329] synonym: "insular gyrus" RELATED [NeuroNames:111] synonym: "insular lobe" EXACT [FMA:67329, NLX:11342] synonym: "insular region" EXACT [FMA:67329] synonym: "insulary cortex" RELATED [BTO:0001105] synonym: "island of Reil" EXACT [FMA:67329] synonym: "lobus insularis" EXACT OMO:0003011 [FMA:67329, FMA:TA] synonym: "morphological insula" RELATED [NeuroNames:111] xref: BAMS:AI xref: BAMS:Ins xref: BIRNLEX:1117 xref: BTO:0001105 xref: DHBA:12176 xref: EV:0100172 xref: FMA:67329 xref: HBA:4268 xref: NCIT:C32278 xref: ncithesaurus:Insula xref: neuronames:111 {source="BIRNLEX:1117"} xref: NLX:11342 xref: SCTID:279201009 xref: UMLS:C0021640 {source="BIRNLEX:1117"} xref: Wikipedia:Insular_cortex is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0000956 {source="BTO", source="NIF"} ! cerebral cortex relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray731.png" xsd:anyURI property_value: IAO:0000116 "Consider splitting insular cortex from insular lobe. See https://github.com/obophenotype/uberon/issues/412" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "two classes in ncit, Central_Lobe is part of temporal lobe" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0002023 name: claustrum of brain namespace: uberon def: "One of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]." [BTO:0004292, Wikipedia:Claustrum] subset: human_reference_atlas subset: uberon_slim synonym: "claustrum" EXACT [MA:0000888] synonym: "claustrum (Burdach)" RELATED [NeuroNames:252] synonym: "dorsal claustrum" EXACT [FMA:67440] synonym: "dorsal portion of claustrum" EXACT [FMA:67440] xref: BAMS:CL xref: BAMS:Cl xref: BAMS:CLA xref: BIRNLEX:1522 xref: BM:Tel-Cl xref: BTO:0004292 xref: DHBA:10346 xref: DMBA:15984 xref: EMAPA:35244 xref: EV:0100183 xref: FMA:67440 xref: HBA:4321 xref: MA:0000888 xref: MBA:583 xref: NCIT:C32329 xref: neuronames:252 {source="BIRNLEX:1522"} xref: PBA:128012960 xref: SCTID:279410004 xref: UMLS:C0008910 {source="BIRNLEX:1522", source="ncithesaurus:Claustrum"} xref: Wikipedia:Claustrum is_a: UBERON:0002420 {source="FMA"} ! basal ganglion is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0000203 {source="ISBN:0471888893"} ! pallium relationship: part_of UBERON:0001869 {source="ISBN:0471888893"} ! cerebral hemisphere relationship: part_of UBERON:0006098 {source="NIF"} ! basal nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0002887 {source="ABA"} property_value: RO:0002171 UBERON:0006107 {source="ABA"} property_value: RO:0002175 NCBITaxon:40674 {source="Wikipedia"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002024 name: internal carotid nerve plexus namespace: uberon def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus] subset: human_reference_atlas subset: uberon_slim synonym: "internal carotid plexus" EXACT [] synonym: "plexus caroticus internus" EXACT OMO:0003011 [FMA:67533, FMA:TA] xref: EMAPA:37618 {source="MA:th"} xref: FMA:67533 xref: MA:0001162 xref: NCIT:C52746 xref: SCTID:280509006 xref: UMLS:C0459526 {source="ncithesaurus:Internal_Carotid_Nerve_Plexus"} xref: Wikipedia:Internal_carotid_nerve_plexus is_a: UBERON:0001816 ! autonomic nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray840.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002028 name: hindbrain namespace: uberon def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Rhombencephalon, ZFA:0000029, ZFIN:curator] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "rhombencephalon" RELATED [] xref: AAO:0010150 xref: BAMS:HB xref: BIRNLEX:942 xref: BTO:0000672 xref: CALOHA:TS-0457 xref: DHBA:10653 xref: DMBA:16808 xref: EFO:0000923 xref: EHDAA2:0000746 xref: EHDAA:3514 xref: EHDAA:6487 xref: EMAPA:16916 xref: FMA:67687 xref: MA:0000195 xref: MAT:0000107 xref: MBA:1065 xref: MESH:D012249 xref: MIAA:0000107 xref: NCIT:C40336 xref: neuronames:540 {source="BIRNLEX:942"} xref: SCTID:303456008 xref: TAO:0000029 xref: UMLS:C0035507 {source="ncithesaurus:Hind-Brain", source="BIRNLEX:942"} xref: UMLS:C1522180 {source="BIRNLEX:942"} xref: VHOG:0000070 xref: Wikipedia:Rhombencephalon xref: XAO:0000015 xref: ZFA:0000029 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 {source="ZFA"} ! brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002171 UBERON:0001891 {exceptions="ZFA", source="ABA", source="https://github.com/obophenotype/uberon/issues/378", status="pending"} property_value: RO:0002171 UBERON:0001894 {source="ABA"} property_value: RO:0002175 NCBITaxon:7762 {source="PMID:8932866"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Posterior part of the brain consisting of the cerebellum and medulla oblongata.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010150", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000029", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from hindbrain neural tube (TAO:0007043)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000029", ontology="TAO"} property_value: UBPROP:0000003 "Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000070", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "rhombencephalic" xsd:string property_value: UBPROP:0000012 "in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps" xsd:string {external_ontology="MA"} [Term] id: UBERON:0002034 name: suprachiasmatic nucleus namespace: uberon def: "* An ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm. (MSH) * small group of nerve cell bodies in the supraoptic region of the hypothalamus, just above the optic chiasm; influences rhythmic aspects of hypothalamic functions in many vertebrate species. (CSP)." [BIRNLEX:1325] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nucleus suprachiasmaticus" RELATED OMO:0003011 [Wikipedia:Suprachiasmatic_nucleus] synonym: "nucleus suprachiasmaticus hypothalami" RELATED OMO:0003011 [NeuroNames:384] synonym: "SCh" BROAD OMO:0003000 [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] synonym: "SCN" BROAD OMO:0003000 [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] synonym: "SCN" RELATED [BTO:0001822] synonym: "suprachiasmatic nucleus (Spiegel-Zwieg)" RELATED [NeuroNames:384] synonym: "suprachiasmatic nucleus of hypothalamus" EXACT [] xref: BAMS:SCH xref: BAMS:SCh xref: BIRNLEX:1325 xref: BM:Die-Hy-SCN xref: BTO:0001822 xref: CALOHA:TS-0992 xref: DHBA:10480 xref: DMBA:15660 xref: EFO:0002475 xref: EMAPA:35841 xref: EV:0100228 xref: FMA:67883 xref: GAID:645 xref: HBA:12908 xref: MA:0000843 xref: MBA:286 xref: MESH:D013493 xref: NCIT:C74537 xref: neuronames:384 {source="BIRNLEX:1325"} xref: SCTID:369132004 xref: TAO:0000441 xref: UMLS:C0038866 {source="ncithesaurus:Suprachiasmatic_Nucleus", source="BIRNLEX:1325"} xref: UMLS:C1289559 {source="BIRNLEX:1325"} xref: VHOG:0000036 xref: Wikipedia:Suprachiasmatic_nucleus xref: XAO:0004072 xref: ZFA:0000441 is_a: UBERON:0006568 ! hypothalamic nucleus is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area relationship: part_of UBERON:0002272 ! medial zone of hypothalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0001934 {source="ABA"} property_value: RO:0002171 UBERON:0002219 {source="ABA"} property_value: RO:0002171 UBERON:0002625 {source="ABA"} property_value: RO:0002171 UBERON:0002689 {source="ABA"} property_value: RO:0002171 UBERON:0002690 {source="ABA"} property_value: RO:0002171 UBERON:0007626 {source="ABA"} [Term] id: UBERON:0002035 name: medial preoptic nucleus namespace: uberon def: "The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]." [Wikipedia:Medial_preoptic_nucleus#Medial_preoptic_nucleus, Wikipedia:Sexually_dimorphic_nucleus] subset: uberon_slim synonym: "area praeoptica medialis" RELATED OMO:0003011 [NeuroNames:380] synonym: "area preopticus medialis" RELATED OMO:0003011 [NeuroNames:380] synonym: "medial preoptic hypothalamic nucleus" EXACT [] synonym: "MPO" BROAD OMO:0003000 [BIRNLEX:706, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus praeopticus medialis" RELATED OMO:0003011 [NeuroNames:380] synonym: "nucleus preopticus medialis" RELATED OMO:0003011 [NeuroNames:380] xref: BAMS:MPO xref: BIRNLEX:706 xref: BTO:0006167 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10470 xref: DMBA:15604 xref: EMAPA:35549 xref: FMA:67890 xref: HBA:4544 xref: MA:0000840 xref: MBA:515 xref: neuronames:380 {source="BIRNLEX:706"} xref: SCTID:369128005 xref: UMLS:C0175313 {source="BIRNLEX:706"} xref: UMLS:C1289555 {source="BIRNLEX:706"} xref: Wikipedia:Sexually_dimorphic_nucleus is_a: UBERON:0006568 ! hypothalamic nucleus is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0007769 {source="MA"} ! medial preoptic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0001935 {source="ABA"} property_value: RO:0002171 UBERON:0002206 {source="ABA"} property_value: RO:0002171 UBERON:0002625 {source="ABA"} property_value: RO:0002171 UBERON:0002634 {source="ABA"} property_value: RO:0002171 UBERON:0002706 {source="ABA"} [Term] id: UBERON:0002037 name: cerebellum namespace: uberon def: "Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]." [BTO:0000232, https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376, ISBN:3764351209, MESH:A08.186.211.132.810.428.200, ZFA:0000100] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "corpus cerebelli" RELATED OMO:0003011 [NeuroNames:643] synonym: "epencephalon-1" EXACT [FMA:67944] synonym: "infratentorial region" BROAD [Wikipedia:Tentorium_cerebelli] synonym: "parencephalon" RELATED OMO:0003011 [NeuroNames:643] xref: AAO:0010485 xref: BAMS:CB xref: BAMS:Cb xref: BIRNLEX:1489 xref: BM:CB xref: BTO:0000232 xref: CALOHA:TS-0125 xref: DHBA:10656 xref: EFO:0000327 xref: EHDAA2:0000232 xref: EMAPA:17787 xref: EV:0100293 xref: FMA:67944 xref: GAID:595 xref: HBA:4696 xref: MA:0000198 xref: MAT:0000110 xref: MBA:512 xref: MESH:D002531 xref: MIAA:0000110 xref: NCIT:C12445 xref: neuronames:643 {source="BIRNLEX:1489"} xref: SCTID:180924008 xref: TAO:0000100 xref: UMLS:C0007765 {source="BIRNLEX:1489", source="ncithesaurus:Cerebellum"} xref: UMLS:C1268981 {source="BIRNLEX:1489"} xref: VHOG:0000024 xref: Wikipedia:Cerebellum xref: XAO:0003098 xref: ZFA:0000100 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001895 {source="FMA", source="MA"} ! metencephalon relationship: part_of UBERON:0002028 {source="NIF", source="ZFA"} ! hindbrain property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:117565 {source="ISBN:0471888893"} property_value: RO:0002171 UBERON:0001893 {source="ABA"} property_value: RO:0002171 UBERON:0002298 {exceptions="ZFA", source="ABA", source="https://github.com/obophenotype/uberon/issues/378", status="pending"} property_value: RO:0002174 NCBITaxon:117569 {source="http://icb.oxfordjournals.org/content/42/4/743.full"} property_value: RO:0002175 NCBITaxon:117569 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Dorsal part of the hindbrain that coordinates muscle movement, posture, and balance.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010485", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000100", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "However, although the lamprey possesses a region comparable to the cerebellum and display expression of LjFgf8/17 at the MHB (midbrain hindbrain boundary), it does not have Purkinje cells and cerebellar nuclei, as well as components of the rhombic lip-derived cerebellar and pre-cerebellar systems. It is noteworthy that the latter structures require specific expression of Pax6 in the rhombic lip of the gnathostome hindbrain. Interestingly, the lamprey rhombic lip does not express Pax6. Thus, it is tempting to speculate that in vertebrate evolution the rostral hindbrain is incapable of differentiating into the cerebellum before the co-option of Pax6 in that region. In other words, cerebellum has been brought about as an evolutionary innovation in gnathostomes, based on exaptation of MHB, rhombic lip, and some regulatory gene expression already present in the vertebrate common ancestor.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000024", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.008 Murakami Y, Uchida K, Rijli FM and Kuratani S, Evolution of the brain developmental plan: Insights from agnathans. Developmental Biology (2005)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "cerebellar" xsd:string property_value: UBPROP:0000008 "The absence of a cerebellum in hagfishes and lampreys appears to be the only exception [to the rule that vertebrates possess the same number of brain divisions]. Both hagfishes and lampreys do possess a thin band of cells located medial to the lateral line centers of the medulla (Ronan and Northcutt, 1998), which has been interpreted as a primitive cerebellum (Larsell, 1967), but more recent experimental studies (Kishida et al., 1987; Weigle and Northcutt, 1998) fail to support Larsell's claim[http://icb.oxfordjournals.org/content/42/4/743.full]" xsd:string property_value: UBPROP:0000012 "almost all AOs agree that the cerebellum is part of the hindbrain (sometimes specifically part of the metencephalon, which, when present, is part of the hindbrain). However, ABA has cerebellum and brain stem as partof siblings, with the hindbrain part of the brainstem" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0002038 name: substantia nigra namespace: uberon def: "Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM)." [BIRNLEX:789] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus of basis pedunculi" EXACT [] synonym: "nucleus pigmentosus subthalamo-peduncularis" RELATED OMO:0003011 [NeuroNames:536] synonym: "SN" BROAD OMO:0003000 [BIRNLEX:789, NIFSTD:NeuroNames_abbrevSource] synonym: "Soemmering's substance" EXACT [] synonym: "substancia nigra" RELATED [Wikipedia:Substantia_nigra] synonym: "substantia nigra (Soemmerringi)" RELATED OMO:0003011 [NeuroNames:536] xref: BAMS:SN xref: BIRNLEX:789 xref: BTO:0000143 xref: CALOHA:TS-0990 xref: DHBA:12251 xref: EFO:0000922 xref: EHDAA2:0004711 xref: EMAPA:35835 xref: EV:0100247 xref: FMA:67947 xref: GAID:581 xref: HBA:9072 xref: MA:0000210 xref: MAT:0000504 xref: MESH:D013378 xref: NCIT:C12453 xref: neuronames:536 {source="BIRNLEX:789"} xref: SCTID:279286002 xref: UMLS:C0038590 {source="BIRNLEX:789", source="ncithesaurus:Substantia_Nigra"} xref: UMLS:C1269578 {source="BIRNLEX:789"} xref: VHOG:0001573 xref: Wikipedia:Substantia_nigra is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001891 {source="multiple"} ! midbrain relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: IAO:0000116 "TODO - In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA][FMA:67947]." xsd:string {source="FMA:67947"} property_value: UBPROP:0000003 "(...) the substantia nigra first appears in reptiles and is best developed in primates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001573", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.336", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002043 name: dorsal raphe nucleus namespace: uberon def: "A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]." [BIRNLEX:982, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, Wikipedia:Dorsal_raphe_nucleus] subset: efo_slim subset: uberon_slim subset: vertebrate_core synonym: "cell group b7" EXACT [FMA:68462] synonym: "dorsal nucleus of the raphe" EXACT [BrainInfo:512, FMA:68462] synonym: "dorsal nucleus raphe" EXACT [FMA:68462] synonym: "dorsal raphe" EXACT [BIRNLEX:982] synonym: "dorsal raphé" RELATED [BAMS:DR] synonym: "DR" BROAD OMO:0003000 [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] synonym: "DRN" BROAD OMO:0003000 [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] synonym: "inferior raphe nucleus" EXACT [GO:0021724] synonym: "nucleus dorsalis raphes" RELATED OMO:0003011 [NeuroNames:512] synonym: "nucleus raphe dorsalis" RELATED OMO:0003011 [Wikipedia:Dorsal_raphe_nucleus] synonym: "nucleus raphe posterior" RELATED OMO:0003011 [Wikipedia:Dorsal_raphe_nucleus] synonym: "nucleus raphes dorsalis" EXACT [BrainInfo:512, BTO:0002434] synonym: "nucleus raphes posterior" EXACT OMO:0003011 [FMA:TA] synonym: "nucleus raphes posterior" RELATED [BTO:0002434] synonym: "posterior raphe nucleus" EXACT [FMA:68462] synonym: "posterior raphe nucleus" RELATED [GO:0021724] xref: BAMS:DR xref: BIRNLEX:982 xref: BM:MB-DR xref: BTO:0002434 xref: DHBA:12223 xref: EFO:0001919 xref: EMAPA:35293 xref: FMA:68462 xref: HBA:9457 xref: MA:0002980 xref: MBA:872 xref: MESH:D065847 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:512 {source="BIRNLEX:982"} xref: TAO:0000366 xref: UMLS:C0175392 {source="BIRNLEX:982"} xref: Wikipedia:Dorsal_raphe_nucleus xref: ZFA:0000366 is_a: UBERON:0007415 ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png" xsd:anyURI property_value: IAO:0000116 "TODO check dorsal vs inferior. ZF has no pons." xsd:string property_value: RO:0002171 UBERON:0002145 {source="ABA"} [Term] id: UBERON:0002044 name: ventral nucleus of posterior commissure namespace: uberon synonym: "Darkshevich nucleus" EXACT [] synonym: "Darkshevich's nucleus" EXACT [FMA:68464] synonym: "Dk" BROAD OMO:0003000 [BIRNLEX:896, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus accessorius" RELATED OMO:0003011 [NeuroNames:514] synonym: "nucleus commissurae posterioris (Riley)" RELATED OMO:0003011 [NeuroNames:514] synonym: "nucleus Darkschewitsch" RELATED OMO:0003011 [NeuroNames:514] synonym: "nucleus Darkschewitschi" RELATED OMO:0003011 [NeuroNames:514] synonym: "nucleus fasciculi longitudinalis medialis" RELATED OMO:0003011 [NeuroNames:514] synonym: "nucleus of Darkschewitsch" EXACT [FMA:68464] synonym: "nucleus of Darkschewitsch (Cajal)" RELATED [NeuroNames:514] synonym: "nucleus of Darkshevich" RELATED [NeuroNames:514] synonym: "nucleus of the posterior commissure (Darkschewitsch)" RELATED [NeuroNames:514] xref: BAMS:Dk xref: BAMS:ND xref: BIRNLEX:896 xref: BM:MB-D xref: DHBA:12218 xref: DMBA:16629 xref: EMAPA:35597 xref: FMA:68464 xref: HBA:9047 xref: MA:0001072 xref: MBA:587 xref: neuronames:514 {source="BIRNLEX:896"} xref: SCTID:369250001 xref: UMLS:C0262291 {source="BIRNLEX:896"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum property_value: RO:0002171 UBERON:0002551 {source="ABA"} [Term] id: UBERON:0002045 name: cuneate nucleus namespace: uberon def: "One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]." [Wikipedia:Cuneate_nucleus] subset: uberon_slim synonym: "Burdach's nucleus" EXACT [] synonym: "burdachs nucleus" EXACT [BIRNLEX:2640] synonym: "Cu" BROAD OMO:0003000 [BIRNLEX:2640, NIFSTD:NeuroNames_abbrevSource] synonym: "cuneate" EXACT [BIRNLEX:2640] synonym: "cuneate nucleus (Burdach)" RELATED [NeuroNames:767] synonym: "cuneate nucleus of the medulla" RELATED [NeuroNames:767] synonym: "nucleus cuneatus" RELATED OMO:0003011 [Wikipedia:Cuneate_nucleus] synonym: "nucleus cuneatus medialis" RELATED OMO:0003011 [NeuroNames:767] synonym: "nucleus restiformis" RELATED OMO:0003011 [NeuroNames:767] xref: BAMS:CU xref: BAMS:Cu xref: BIRNLEX:2640 xref: BM:Me-Cu xref: DHBA:12589 xref: EMAPA:35268 xref: FMA:68465 xref: HBA:9542 xref: MA:0001035 xref: MBA:711 xref: NCIT:C52716 xref: neuronames:767 {source="BIRNLEX:2640"} xref: SCTID:369072005 xref: UMLS:C0228548 {source="ncithesaurus:Cuneate_Nucleus"} xref: UMLS:C0587939 {source="BIRNLEX:2640"} xref: Wikipedia:Cuneate_nucleus is_a: UBERON:0018238 {source="ABA", source="ISBN:978-1-4615-0037-7", source="WP"} ! dorsal column nucleus relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png" xsd:anyURI property_value: RO:0002171 UBERON:0002161 {source="ABA"} [Term] id: UBERON:0002047 name: pontine raphe nucleus namespace: uberon def: "The pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_raphe_nucleus] subset: pheno_slim subset: uberon_slim synonym: "nucleus raphe pontis" RELATED OMO:0003011 [NeuroNames:589] synonym: "nucleus raphes pontis" RELATED OMO:0003011 [Wikipedia:Pontine_raphe_nucleus] synonym: "raphe (mediana pontina)" RELATED OMO:0003011 [NeuroNames:589] synonym: "raphe of pons" EXACT [] synonym: "raphe pontis" EXACT OMO:0003011 [FMA:68875, FMA:TA] synonym: "raphe pontis nucleus" RELATED [] xref: BAMS:PnR xref: BAMS:RA-PONS xref: BAMS:RPn xref: BIRNLEX:1110 xref: DHBA:12471 xref: DHBA:12475 xref: FMA:68875 xref: HBA:9159 xref: MA:0001022 xref: MBA:238 xref: neuronames:589 {source="BIRNLEX:1110"} xref: UMLS:C0175423 {source="BIRNLEX:1110"} xref: Wikipedia:Pontine_raphe_nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei property_value: RO:0002171 UBERON:0002148 {source="ABA"} property_value: RO:0002171 UBERON:0002267 {source="ABA"} property_value: RO:0002171 UBERON:0002587 {source="ABA"} property_value: RO:0002171 UBERON:0003004 {source="ABA"} [Term] id: UBERON:0002058 name: main ciliary ganglion namespace: uberon def: "A parasympathetic ganglion located in the posterior orbit that contains preganglionic nerves and postganglionic neurons of the oculomotor nerve, connects to the Edinger-Westphal nucleus via the oculomotor nerve and the eye muscles via the short ciliary nerve." [UBERON:cjm, Wikipedia:Ciliary_ganglion] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "ciliary ganglion" EXACT [MA:0001136] synonym: "ganglion ciliare" RELATED OMO:0003011 [Wikipedia:Ciliary_ganglion] xref: BAMS:GcIII xref: EFO:0002559 xref: EHDAA2:0000251 xref: EHDAA:5623 xref: EMAPA:18222 xref: FMA:6964 xref: MA:0001136 xref: NLXANAT:100304 xref: SCTID:279281007 xref: VHOG:0000805 xref: Wikipedia:Ciliary_ganglion is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0035783 ! ganglion of ciliary nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Augennerven.jpg" xsd:anyURI property_value: IAO:0000232 "the main ciliary ganglion (typically just called the ciliary ganglion) is differentiated from the accessory by connection to the oculomotor nerve." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 1-2 millimeters in diameter and contains approximately 2,500 neurons. Preganglionic axons from the Edinger-Westphal nucleus form synapses with these cells. The postganglionic axons run in the short ciliary nerves and innervate two eye muscles: the sphincter pupillae constricts the pupil, known as Miosis. The opposite, Mydriasis, is the dilation of the pupil. the ciliaris muscle contracts, releasing tension on the Zonular Fibers, making the lens more convex, also known as accommodation. Both of these muscles are involuntary - they are controlled by the autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted][Wikipedia:Ciliary_ganglion]." xsd:string {source="Wikipedia:Ciliary_ganglion"} property_value: UBPROP:0000003 "Little is known about the development of parasympathetic neurons apart from the ciliary ganglion in chicks. Although there are considerable gaps in our knowledge, some of the mechanisms controlling sympathetic and enteric neuron development appear to be conserved between mammals, avians and zebrafish.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000805", ontology="VHOG", source="DOI:10.1016/j.autneu.2010.03.002 Young HM, Cane KN, Anderson CR, Development of the autonomic nervous system: A comparative view. Autonomic Neuroscience : basic and clinical (2010)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002059 name: submandibular ganglion namespace: uberon def: "The ganglion associated with the lingual nerve that provides postsynaptic fibers to the submandibular and sublingual glands." [ISBN:0-683-40008-8, MP:0001035] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Blandin`s ganglion" RELATED [BTO:0001318] synonym: "ganglion submandibulare" RELATED OMO:0003011 [BTO:0001318, Wikipedia:Submandibular_ganglion] synonym: "lingual ganglion" RELATED [https://sourceforge.net/tracker/index.php?func=detail&aid=2979467&group_id=76834&atid=1205376, MA:0002470] synonym: "mandibular ganglion" EXACT SENSU [UBERON:cjm] synonym: "maxillary ganglion" RELATED [MA:0002470] synonym: "submaxillary ganglion" RELATED [MA:0002470] xref: BTO:0001318 xref: EHDAA2:0001942 xref: EHDAA:6710 xref: EMAPA:36276 xref: FMA:6966 xref: MA:0002470 xref: NCIT:C52558 xref: SCTID:279282000 xref: UMLS:C0229063 {source="ncithesaurus:Submandibular_Ganglion"} xref: Wikipedia:Submandibular_ganglion is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0000011 {source="MP"} ! parasympathetic nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/83/Gray778.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002092 name: brain dura mater namespace: uberon def: "The fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer." [MP:0009025] subset: pheno_slim synonym: "cranial dura mater" EXACT [FMA:71236] synonym: "dura mater cranialis" EXACT OMO:0003011 [FMA:71236, FMA:TA] synonym: "dura mater encephali" EXACT [] synonym: "dura mater of brain" EXACT [] xref: EMAPA:32668 xref: FMA:71236 xref: MA:0000815 xref: NCIT:C49332 xref: SCTID:309321003 xref: UMLS:C0459393 {source="ncithesaurus:Cerebral_Dura_Mater"} xref: VHOG:0000270 is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003547 ! brain meninx relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000001 "The outermost and densest membrane of the three mammalian meninges covering the brain and spinal cord. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000270", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000270", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002093 name: spinal dura mater namespace: uberon def: "A dura mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] subset: organ_slim subset: pheno_slim synonym: "dura mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "dura mater of spinal cord" EXACT [] synonym: "spinal cord dura mater" EXACT [] synonym: "spinal cord dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17806 xref: FMA:71237 xref: MA:0001132 xref: NCIT:C49799 xref: SCTID:362302001 xref: UMLS:C0228124 {source="ncithesaurus:Spinal_Cord_Dura_Mater"} xref: VHOG:0000411 is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003292 ! meninx of spinal cord relationship: part_of UBERON:0002240 ! spinal cord property_value: UBPROP:0000001 "The outermost and densest membrane of the three mammalian meninges covering the brain and spinal cord. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000411", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000411", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002126 name: solitary tract nuclear complex namespace: uberon def: "The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [Wikipedia:Nucleus_of_tractus_solitarius] subset: uberon_slim synonym: "nuclei of solitary tract" EXACT [] synonym: "nucleus tractus solitarii" EXACT OMO:0003011 [FMA:72242, FMA:TA] synonym: "solitary nuclei" EXACT [] xref: FMA:72242 xref: SCTID:369080003 xref: Wikipedia:Nucleus_of_tractus_solitarius is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001896 {source="MA-abduced"} ! medulla oblongata property_value: RO:0002171 UBERON:0002162 {source="ABA"} property_value: RO:0002171 UBERON:0002591 {source="ABA"} property_value: RO:0002171 UBERON:0002610 {source="ABA"} property_value: RO:0002171 UBERON:0002864 {source="ABA"} property_value: RO:0002171 UBERON:0002866 {source="ABA"} property_value: RO:0002171 UBERON:0002873 {source="ABA"} property_value: RO:0002171 UBERON:0007633 {source="ABA"} [Term] id: UBERON:0002127 name: inferior olivary complex namespace: uberon def: "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caudal olivary nuclei" RELATED [BTO:0002298] synonym: "complexus olivaris inferior" RELATED [BTO:0002298] synonym: "complexus olivaris inferior; nuclei olivares inferiores" RELATED OMO:0003011 [Wikipedia:Inferior_olivary_nucleus] synonym: "inferior olivary complex (Vieussens)" RELATED [NeuroNames:748] synonym: "inferior olivary nuclear complex" EXACT [FMA:72243] synonym: "inferior olivary nuclei" RELATED [BTO:0002298] synonym: "inferior olivary nucleus" RELATED [FMA:72243] synonym: "inferior olive" EXACT [FMA:72243] synonym: "nuclei olivares caudales" RELATED [BTO:0002298] synonym: "nuclei olivares inferiores" RELATED [BTO:0002298] synonym: "nucleus olivaris caudalis" RELATED OMO:0003011 [NeuroNames:748] synonym: "nucleus olivaris inferior" RELATED OMO:0003011 [NeuroNames:748] synonym: "oliva" EXACT OMO:0003011 [FMA:72243, FMA:TA] synonym: "regio olivaris inferior" RELATED OMO:0003011 [NeuroNames:748] xref: BAMS:ifol xref: BAMS:IO xref: BIRNLEX:1164 xref: BM:Me-IO xref: BTO:0002298 xref: DHBA:12600 xref: EV:0100277 xref: FMA:72243 xref: HBA:9560 xref: MA:0001040 xref: MBA:83 xref: neuronames:748 {source="BIRNLEX:1164"} xref: TAO:0000215 xref: UMLS:C0228540 {source="BIRNLEX:1164"} xref: VHOG:0001627 xref: Wikipedia:Inferior_olivary_nucleus xref: ZFA:0000215 is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0000128 ! olivary body property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/72/CerebCircuit.png" xsd:anyURI property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "The inferior olive appears to be present in all vertebrate classes and is particularly well developed in species with a well-developed cerebellum.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001627", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.256", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002128 name: superior olivary complex namespace: uberon def: "A collection of brainstem nuclei that functions in multiple aspects of hearing and is an important component of the ascending and descending auditory pathways of the auditory system." [ISBN:0-19-502694-2, Wikipedia:Superior_olivary_complex] subset: uberon_slim synonym: "nucleus olivaris superior" EXACT OMO:0003011 [FMA:72247, FMA:TA] synonym: "regio olivaris superioris" RELATED OMO:0003011 [NeuroNames:569] synonym: "superior olivary nuclei" EXACT [FMA:72247] synonym: "superior olivary nucleus" RELATED INCONSISTENT [FMA:72247] synonym: "superior olivary nucleus (Barr & Kiernan)" RELATED [NeuroNames:569] synonym: "superior olive" RELATED INCONSISTENT [FMA:72247, ISBN:0-19-502694-2] xref: BAMS:SOC xref: BIRNLEX:1307 xref: DHBA:12462 xref: EMAPA:35840 xref: EV:0100263 xref: FMA:72247 xref: HBA:9177 xref: MA:0001026 xref: MBA:398 xref: MESH:D065832 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:569 {source="BIRNLEX:1307"} xref: UMLS:C0175427 {source="BIRNLEX:1307"} xref: VHOG:0001381 xref: Wikipedia:Superior_olivary_complex is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0003023 {source="NIFSTD"} ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png" xsd:anyURI property_value: RO:0002171 UBERON:0002597 {source="ABA"} property_value: RO:0002171 UBERON:0006840 {source="ABA"} property_value: RO:0002171 UBERON:0007634 {source="ABA"} property_value: UBPROP:0000008 "In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO:0021718]" xsd:string property_value: UBPROP:0000008 "The SOC displays a significant interspecies variation, being largest in bats and rodents and smaller in primates." xsd:string [Term] id: UBERON:0002129 name: cerebellar cortex namespace: uberon def: "The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer." [BIRNLEX:1566] comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cortex cerebellaris" RELATED [BTO:0000043] synonym: "cortex cerebelli" RELATED OMO:0003011 [NeuroNames:647] synonym: "cortex of cerebellar hemisphere" EXACT [DMBA:CbHCx] xref: BAMS:CB xref: BAMS:CbCx xref: BAMS:CBX xref: BIRNLEX:1566 xref: BM:CB-Cbx xref: BTO:0000043 xref: CALOHA:TS-2000 xref: DHBA:10657 xref: DMBA:16939 xref: EMAPA:35211 xref: EV:0100294 xref: FMA:72248 xref: GAID:596 xref: HBA:4697 xref: MA:0000199 xref: MBA:528 xref: MESH:D002525 xref: NCIT:C49216 xref: neuronames:647 {source="BIRNLEX:1566"} xref: SCTID:361593004 xref: UMLS:C0007759 {source="BIRNLEX:1566", source="ncithesaurus:Cerebellar_Cortex"} xref: UMLS:C1284087 {source="BIRNLEX:1566"} xref: VHOG:0001597 xref: Wikipedia:Cerebellar_cortex is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002037 ! cerebellum property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png" xsd:anyURI property_value: RO:0002171 UBERON:0002130 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO][GO:0021695]." xsd:string {source="GO:0021695"} [Term] id: UBERON:0002130 name: cerebellar nuclear complex namespace: uberon alt_id: UBERON:0004007 def: "The gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP]." [MP:0009979, Wikipedia:Deep_cerebellar_nuclei] subset: human_reference_atlas subset: uberon_slim synonym: "central nuclei" EXACT [] synonym: "cerebellar nuclei" EXACT [] synonym: "deep cerebellar nuclear complex" EXACT [BIRNLEX:1568] synonym: "deep cerebellar nuclei" EXACT [] synonym: "intracerebellar nuclei" EXACT [] synonym: "intrinsic nuclei of cerebellum" EXACT [] synonym: "nuclei cerebellares" RELATED OMO:0003011 [NeuroNames:682] synonym: "nuclei cerebellaris" RELATED OMO:0003011 [NeuroNames:682] synonym: "nuclei cerebelli" EXACT OMO:0003011 [FMA:72249, FMA:TA] synonym: "nuclei cerebelli" RELATED OMO:0003011 [Wikipedia:Deep_cerebellar_nuclei] synonym: "roof nuclei-2" EXACT [] xref: BAMS:CBN xref: BAMS:CBn xref: BAMS:DCb xref: BAMS:DNC xref: BIRNLEX:1568 xref: DHBA:10660 xref: EV:0100299 xref: FMA:72249 xref: GAID:599 xref: HBA:4780 xref: MBA:519 xref: MESH:D002529 xref: neuronames:682 {source="BIRNLEX:1568"} xref: UMLS:C0007763 {source="BIRNLEX:1568"} xref: Wikipedia:Deep_cerebellar_nuclei is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002037 ! cerebellum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:32443 {contributor="michaelerice", source="PMID:17134989", source="PMID:2040726"} property_value: RO:0002171 UBERON:0002129 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002131 name: anterior lobe of cerebellum namespace: uberon def: "The region of the cerebellum that is anterior to the primary fissure." [ISBN:0838580343, MP:0009960] subset: pheno_slim subset: uberon_slim synonym: "anterior cerebellar lobe" EXACT [] synonym: "anterior lobe of cerebellum" EXACT [] synonym: "anterior lobe of the cerebellum" EXACT [BIRNLEX:1118] synonym: "cerebellar anterior lobe" EXACT [] synonym: "cerebellum anterior lobe" EXACT [] synonym: "palaeocerebellum" RELATED [Wikipedia:Anterior_lobe_of_cerebellum] xref: BAMS:ALCb xref: BAMS:ANT xref: BAMS:Ant xref: BIRNLEX:1118 xref: BTO:0000496 xref: DHBA:12838 xref: EMAPA:35215 xref: EV:0100295 xref: FMA:72251 xref: MA:0000991 xref: neuronames:650 xref: SCTID:279359004 xref: VHOG:0001598 xref: Wikipedia:Anterior_lobe_of_cerebellum is_a: UBERON:0005293 ! cerebellum lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/13/CerebellumRegions.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0004002 property_value: UBPROP:0000009 "responsible for mediating unconscious proprioception.[Wikipedia:Anterior_lobe_of_cerebellum]" xsd:string [Term] id: UBERON:0002132 name: dentate nucleus namespace: uberon alt_id: UBERON:0008996 def: "The largest and most lateral of the deep cerebellum nuclei; it receives axons of Purkinje cells in the lateral cerebellar hemisphere (neocerebellum) and receives its afferents from the premotor cortex and the supplementary motor cortex through the pontocerebellar system, and its efferents project through the superior cerebellar peduncle and is a major source of its fibers." [ISBN:0-683-40008-8, MP:0009980] subset: pheno_slim subset: uberon_slim synonym: "dentate cerebellar nucleus" EXACT [BIRNLEX:1171] synonym: "dentate nucleus" RELATED [Wikipedia:Dentate_nucleus] synonym: "dentate nucleus (Vicq d'Azyr)" RELATED [NeuroNames:683] synonym: "dentatothalamocortical fibers" RELATED [Wikipedia:Dentate_nucleus] synonym: "lateral cerebellar nucleus" EXACT [] synonym: "lateral nucleus of cerebellum" EXACT [] synonym: "nucleus dentatus" RELATED OMO:0003011 [Wikipedia:Dentate_nucleus] synonym: "nucleus dentatus cerebelli" RELATED OMO:0003011 [NeuroNames:683] synonym: "nucleus lateralis cerebelli" RELATED OMO:0003011 [NeuroNames:683] xref: BAMS:DN xref: BAMS:Dt xref: BIRNLEX:1171 xref: BM:CB-CBL xref: BTO:0003836 xref: EV:0100300 xref: FMA:72260 xref: HBA:12946 xref: MA:0001008 xref: MBA:846 xref: neuronames:683 {source="BIRNLEX:1171"} xref: SCTID:279221005 xref: UMLS:C0086120 {source="BIRNLEX:1171"} xref: VHOG:0001700 xref: Wikipedia:Dentate_nucleus is_a: UBERON:0008995 ! nucleus of cerebellar nuclear complex relationship: part_of UBERON:0002130 ! cerebellar nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png" xsd:anyURI property_value: RO:0002171 UBERON:0002153 {source="ABA"} property_value: UBPROP:0000003 "One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001700", ontology="VHOG", source="ISBN:978-0471210054 Butler AB, Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.260-261", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002136 name: hilus of dentate gyrus namespace: uberon def: "Layer of the dentate gyrus lying deep to the granule cell layer, within the opening of the C or V formed by the granule cell layer characterized by loosely packed polymorphic cells." [BIRNLEX:1482] comment: Merge with CA4? synonym: "CA4" RELATED [] synonym: "dentate gyrus hilus" EXACT [] synonym: "field CA4 of hippocampal formation" EXACT [] synonym: "hilus gyri dentati" RELATED OMO:0003011 [NeuroNames:181] synonym: "hilus of the dentate gyrus" RELATED [NeuroNames:181] synonym: "multiform layer of dentate gyrus" RELATED [FMA:72358] synonym: "polymorphic later of dentate gyrus" RELATED [FMA:72358] synonym: "region CA4" RELATED [NeuroNames:181] xref: BAMS:hdg xref: BAMS:Hil xref: BIRNLEX:1482 xref: EMAPA:35277 xref: FMA:72358 xref: MA:0000947 xref: neuronames:181 {source="BIRNLEX:1482"} xref: UMLS:C1134421 {source="BIRNLEX:1482"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001885 {source="NIFSTD"} ! dentate gyrus of hippocampal formation [Term] id: UBERON:0002138 name: habenulo-interpeduncular tract namespace: uberon def: "White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone)." [BIRNLEX:1504] subset: vertebrate_core synonym: "fasciculus habenulo-interpeduncularis" RELATED OMO:0003011 [NeuroNames:2318] synonym: "fasciculus retroflexi" RELATED OMO:0003004 [ZFA:0000353] synonym: "fasciculus retroflexus" EXACT [ISBN:0471888893] synonym: "fasciculus retroflexus (Meynert)" EXACT [BIRNLEX:1504] synonym: "fasciculus retroflexus (of Meynert)" RELATED OMO:0003011 [NeuroNames:2318] synonym: "habenulointerpeduncular fasciculus" EXACT [] synonym: "habenulointerpeduncular tract" RELATED [] synonym: "habenulopeduncular tract" EXACT [] synonym: "Meynert's retroflex bundle" EXACT [] synonym: "rf" RELATED OMO:0003000 [DMBA:17790] synonym: "tractus habenulo-intercruralis" RELATED OMO:0003011 [NeuroNames:2318] synonym: "tractus habenulo-interpeduncularis" EXACT [ZFA:0000353] synonym: "tractus habenulointercruralis" RELATED OMO:0003011 [NeuroNames:2318] synonym: "tractus habenulointerpeduncularis" RELATED OMO:0003011 [NeuroNames:2318] synonym: "tractus retroflexus (Meynert)" RELATED OMO:0003011 [NeuroNames:2318] xref: BAMS:fr xref: BIRNLEX:1504 xref: BM:HPT xref: DMBA:17790 xref: EMAPA:36606 xref: FMA:72400 xref: HBA:12953 xref: MBA:595 xref: neuronames:2318 {source="BIRNLEX:1504"} xref: SCTID:369194000 xref: TAO:0000353 xref: UMLS:C0228391 {source="BIRNLEX:1504"} xref: ZFA:0000353 is_a: UBERON:0001019 {source="NIFSTD"} ! nerve fasciculus is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000008 "present in all fishes and tetrapods" xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0002139 name: subcommissural organ namespace: uberon def: "The subcommissural organ is a circumventricular organ consisting of ependymal and hypendymal cells which secrete SCO-spondin[WP,partially vetted]." [PMID:9579598, Wikipedia:Subcommissural_organ] comment: Occurs throughout the vertebartes [PMID:9579598, DOI:10.1002/ar.1091260210]. First appears in hagfish(Olsson). In many species, including the human, it reaches its full development during embryonic life[PMID:9579598]. During the course of phyletic evolution, one notes various changes. Indeed, in lower vertebrates, the SCO presents a greater degree of enzyme activity than the ependyma while in birds the ependyma demonstrates a more intense activity than the SCO[PMID:479574] Sometimes preceded by flexural organ[DOI:10.1007/BF00303086]. Hypendymal cells are rare in non-mammals [PMID:9579598]. {xref="DOI:10.1002/ar.1091260210", xref="PMID:479574", xref="DOI:10.1007/BF00303086", xref="PMID:9579598"} subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebral aqueduct subcommissural organ" RELATED [BAMS:SCO] synonym: "corpus subcommissurale" RELATED OMO:0003011 [NeuroNames:483] synonym: "dorsal subcommissural organ" RELATED [] synonym: "organum subcommissurale" RELATED OMO:0003011 [Wikipedia:Subcommissural_organ] synonym: "SCO" RELATED [] xref: BAMS:SCO xref: BIRNLEX:1028 xref: BTO:0001820 xref: CALOHA:TS-0986 xref: DHBA:12101 xref: DMBA:16514 xref: EMAPA:35828 xref: FMA:72414 xref: GAID:794 xref: HBA:9489 xref: MA:0002941 xref: MESH:D013351 xref: neuronames:483 {source="BIRNLEX:1028"} xref: SCTID:369193006 xref: TAO:0000683 xref: UMLS:C0038533 {source="BIRNLEX:1028"} xref: Wikipedia:Subcommissural_organ xref: ZFA:0000683 is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ relationship: part_of UBERON:0002314 {source="MA"} ! midbrain tectum relationship: part_of UBERON:0011357 ! Reissner's fiber property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI property_value: IAO:0000232 "Hypendymal cells being part of the subcommissural organ is not axiomatized as it is rare in non-mammals. Consider using GCIs if this axiom needs to be added." xsd:string property_value: RO:0002175 NCBITaxon:7742 {source="multiple"} [Term] id: UBERON:0002140 name: parabigeminal nucleus namespace: uberon def: "Cholinergic cell group that is located ventral to the brachium of the inferior colliculus (in rat) and has reciprocal connectivity with the superior colliculus (Adapted from Paxinos, The rat central nervous system, 2nd ed, 1995, pg 865." [BIRNLEX:1007] synonym: "corpus parabigeminum" RELATED OMO:0003011 [NeuroNames:482] synonym: "nucleus isthmi" RELATED [VHOG:0001701] synonym: "nucleus parabigeminalis" EXACT [NeuroNames:482] synonym: "parabigeminal nucleus (Bechterew)" RELATED [NeuroNames:482] synonym: "parageminal nucleus" RELATED [BAMS:PBG] xref: BAMS:PBG xref: BIRNLEX:1007 xref: BM:PBG xref: DHBA:12312 xref: DMBA:16862 xref: EMAPA:35656 xref: FMA:72415 xref: HBA:9111 xref: MA:0001074 xref: MBA:874 xref: neuronames:482 {source="BIRNLEX:1007"} xref: UMLS:C0262301 {source="BIRNLEX:1007"} xref: VHOG:0001701 is_a: UBERON:0011214 {source="FMA", source="NIF"} ! nucleus of midbrain tectum property_value: UBPROP:0000003 "Nucleus isthmi is present in the isthmus in most vertebrates. It is called the parabigeminal nucleus in mammals (reference 1); In sum, our results show that the origin of neurons of some tegmental hindbrain nuclei, namely, nucleus isthmi/superior reticular nucleus and secondary gustatory/viscerosensory nucleus is in the URL (upper rhombic lip), and that the temporal order of cell types produced by the URL and their developmental program are conserved among vertebrate species (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001701", ontology="VHOG", source="ISBN:978-0471210054 Butler AB, Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.272, DOI:10.1002/cne.22364 Volkmann K, Chen YY, Harris MP, Wullimann MF, Köster RW, The zebrafish cerebellar upper rhombic lip generates tegmental hindbrain nuclei by long-distance migration in an evolutionary conserved manner. The Journal of Comparative Neurology (2010)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "in MA this is part of the tegmentum/brainstem" xsd:string {external_ontology="MA"} [Term] id: UBERON:0002141 name: parvocellular oculomotor nucleus namespace: uberon def: "Nucleus that is part of the oculomotor nerve complex consisting of preganglionic parasympathetic neurons situated close to the midline at the level of the superior colliculus (Heimer, the Human Brain and Spinal Cord, 1994, pg 244)." [BIRNLEX:822] subset: uberon_slim subset: vertebrate_core synonym: "accessory oculomotor nucleus" EXACT [Wikipedia:Edinger-westphal_nucleus] synonym: "Edinger-Westphal nucleus" EXACT [MA:0001071, Wikipedia:Edinger-westphal_nucleus] synonym: "Edinger-Westphal nucleus of oculomotor nerve" RELATED [NeuroNames:498] synonym: "EW" BROAD OMO:0003000 [HBA:9449] synonym: "nuclei accessorii nervi oculomtorii (Edinger-Westphal)" RELATED OMO:0003011 [NeuroNames:498] synonym: "nucleus Edinger Westphal" RELATED OMO:0003011 [NeuroNames:498] synonym: "nucleus Edinger-Westphal" EXACT [ZFA:0000244] synonym: "nucleus nervi oculomotorii Edinger-Westphal" RELATED OMO:0003011 [NeuroNames:498] synonym: "nucleus nervi oculomotorii parvocellularis" RELATED OMO:0003011 [NeuroNames:498] synonym: "nucleus rostralis nervi oculomotorii" RELATED OMO:0003011 [NeuroNames:498] synonym: "nucleus Westphal-Edinger" RELATED OMO:0003011 [NeuroNames:498] synonym: "oculomotor nucleus, parvicellular part" RELATED [NeuroNames:498] synonym: "oculomotor nucleus, parvocellular part" RELATED INCONSISTENT [BIRNLEX:822] synonym: "PC3" BROAD OMO:0003000 [BIRNLEX:822, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:EW xref: BAMS:PC3 xref: BIRNLEX:822 xref: BM:EW xref: DHBA:12219 xref: EMAPA:35302 xref: FMA:72424 xref: HBA:9449 xref: MA:0001071 xref: MBA:975 xref: MESH:D065839 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:498 {source="BIRNLEX:822"} xref: SCTID:62088007 xref: TAO:0000244 xref: UMLS:C0228416 {source="BIRNLEX:822"} xref: Wikipedia:Edinger-westphal_nucleus xref: ZFA:0000244 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="FMA", source="MA", source="ZFA"} ! midbrain tegmentum property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2658" xsd:string property_value: UBPROP:0000009 "The Edinger-Westphal nucleus supplies preganglionic parasympathetic fibers to the eye, constricting the pupil, accommodating the lens, and convergence of the eyes. It has also been implicated in the mirroring of pupil size in sad facial expressions[WP]" xsd:string property_value: UBPROP:0000015 "The paired nuclei are posterior to the main motor nucleus (oculomotor nucleus) and anterolateral to the cerebral aqueduct in the rostral midbrain at the level of the superior colliculus. It is the most rostral of the parasympathetic nuclei in the brain stem.[WP]" xsd:string [Term] id: UBERON:0002142 name: pedunculopontine tegmental nucleus namespace: uberon def: "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]." [https://github.com/obophenotype/mouse-anatomy-ontology/issues/95, Wikipedia:Pedunculopontine_tegmental_nucleus] subset: uberon_slim synonym: "nucleus pedunculopontinus" RELATED OMO:0003011 [NeuroNames:504] synonym: "nucleus tegmenti pedunculopontinus" RELATED OMO:0003011 [NeuroNames:504] synonym: "peduncular pontine nucleus" EXACT [] synonym: "pedunculopontine nucleus" EXACT [] synonym: "PPTg" BROAD OMO:0003000 [BIRNLEX:1437, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PPN xref: BAMS:PPTg xref: BIRNLEX:1437 xref: BM:Pons-PPT xref: DHBA:12413 xref: DMBA:16965 xref: EMAPA:35672 xref: FMA:72429 xref: HBA:9021 xref: MA:0001020 xref: MBA:1052 xref: MESH:D045042 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:504 {source="BIRNLEX:1437"} xref: UMLS:C0262306 {source="BIRNLEX:1437"} xref: Wikipedia:Pedunculopontine_tegmental_nucleus is_a: UBERON:0007415 ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 {inconsistent_with="MA", source="FMA", source="NIFSTD"} ! midbrain reticular formation property_value: RO:0002171 UBERON:0001965 {source="ABA"} property_value: RO:0002171 UBERON:0007412 {source="ABA"} [Term] id: UBERON:0002143 name: dorsal tegmental nucleus namespace: uberon subset: vertebrate_core synonym: "dorsal tegmental nucleus (Gudden)" EXACT [] synonym: "dorsal tegmental nucleus of Gudden" EXACT [BIRNLEX:992] synonym: "DTg" BROAD OMO:0003000 [BIRNLEX:992, NIFSTD:NeuroNames_abbrevSource] synonym: "DTN" RELATED OMO:0003000 [ZFA:0000346] synonym: "ganglion dorsale tegmenti" RELATED OMO:0003011 [NeuroNames:517] synonym: "gudden nucleus" EXACT [] synonym: "nucleus compactus suprafascicularis" RELATED OMO:0003011 [NeuroNames:517] synonym: "nucleus dorsalis tegmenti" RELATED OMO:0003011 [NeuroNames:517] synonym: "nucleus dorsalis tegmenti (Gudden)" RELATED OMO:0003011 [NeuroNames:517] synonym: "nucleus opticus dorsalis" RELATED OMO:0003011 [NeuroNames:517] synonym: "nucleus tegmentalis dorsalis" EXACT [ZFA:0000346] synonym: "nucleus tegmentalis posterior" EXACT OMO:0003011 [FMA:72434, FMA:TA] synonym: "nucleus tegmenti dorsale" RELATED OMO:0003011 [NeuroNames:517] synonym: "posterior tegmental nucleus" EXACT [] synonym: "von Gudden's nucleus" EXACT [] xref: BAMS:DTg xref: BAMS:DTN xref: BIRNLEX:992 xref: BM:TD xref: DHBA:12508 xref: DMBA:17000 xref: EMAPA:35294 xref: FMA:72434 xref: HBA:265504876 xref: MA:0001013 xref: MBA:880 xref: neuronames:517 {source="BIRNLEX:992"} xref: TAO:0000346 xref: UMLS:C0175393 {source="BIRNLEX:992"} xref: VHOG:0001368 xref: ZFA:0000346 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} [Term] id: UBERON:0002144 name: peripeduncular nucleus namespace: uberon def: "A group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive." [http://www.medilexicon.com/medicaldictionary.php?t=61630] synonym: "nucleus peripeduncularis" RELATED OMO:0003011 [NeuroNames:520] synonym: "nucleus peripeduncularis thalami" RELATED OMO:0003011 [NeuroNames:520] synonym: "peripeduncular nucleus of pons" EXACT [FMA:72437] synonym: "PPd" BROAD OMO:0003000 [BIRNLEX:1474, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PP xref: BAMS:PPd xref: BIRNLEX:1474 xref: BM:MB-PPN xref: DHBA:12285 xref: DMBA:16342 xref: EMAPA:37717 {source="MA:th"} xref: FMA:72437 xref: HBA:9050 xref: MA:0000875 xref: MBA:1044 xref: neuronames:520 {source="BIRNLEX:1474"} xref: SCTID:25949000 xref: UMLS:C0152368 {source="BIRNLEX:1474"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum property_value: RO:0002171 UBERON:0002704 {source="ABA"} property_value: RO:0002171 UBERON:0002776 {source="ABA"} property_value: UBPROP:0000012 "FMA and NIF support this being part of midbrain tegmentum; MA places this in the thalamus and ABA supports thalamus. todo - check. for now we take a conservative position and assert overlaps for both rather than part of" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002145 name: interpeduncular nucleus namespace: uberon subset: vertebrate_core synonym: "interpedunclear nucleus" RELATED [MTB:379] synonym: "interpeduncular ganglion" EXACT [] synonym: "interpeduncular nuclei" EXACT OMO:0003004 [] synonym: "interpeduncular nucleus (Gudden)" RELATED [NeuroNames:522] synonym: "interpeduncular nucleus of midbrain" EXACT [] synonym: "interpeduncular nucleus tegmentum" RELATED [TAO:0000903] synonym: "IP" BROAD OMO:0003000 [BIRNLEX:1000, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus interpeduncularis" RELATED OMO:0003011 [NeuroNames:522] synonym: "nucleus interpeduncularis medialis" RELATED OMO:0003011 [NeuroNames:522] xref: BAMS:IPN xref: BIRNLEX:1000 xref: BM:MB-IP xref: DHBA:12270 xref: EMAPA:35439 xref: FMA:72439 xref: HBA:9012 xref: MA:0001069 xref: MBA:100 xref: MESH:D066268 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:522 {source="BIRNLEX:1000"} xref: SCTID:369240002 xref: TAO:0000903 xref: UMLS:C0175398 {source="BIRNLEX:1000"} xref: ZFA:0000903 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum property_value: RO:0002171 UBERON:0002043 {source="ABA"} [Term] id: UBERON:0002147 name: reticulotegmental nucleus namespace: uberon def: "The tegmental pontine reticular nucleus (or pontine reticular nucleus of the tegmentum) is an area within the floor of the midbrain. This area is known to affect the cerebellum with its axonal projections. These efferent connections have been proven to project not only ipsilaterally, but also to decussate and project to the contralateral side of the vermis. It has also been shown that the projections from the tegmenti pontis to the cerebellar lobes are only crossed fibers. The n.r. tegmenti pontis also receives afferent axons from the cerebellum. This nucleus is known for its large amount of multipolar cells and its particularly reticular structure. The n.r. tegmenti pontis is topographically related to pontine nuclei (non-reticular), being just dorsal to them. The nucleus reticularis has been known to mediate eye movements, otherwise known as so-called saccadic movement. This makes sense concerning their connections as it would require a nucleus which receives and projects to the cerebellum to mediate that kind of complex circuitry. Also, behaviorally this makes sense as no one thinks about saccadic movements when scanning a room and the saccadic movements are not directly controlled by the cortex. The nuclei of the cerebellum are the most traditionally studied mostly because it is easy to see which nuclei degrade when the cerebellum is amputated. The neurons of the lateral reticular formation are very important for reflexes and the mediation of posture. It has been shown in cats that electrical stimulation of the reticular formation can make a standing cat lie down. Conversely if the cat is stimulated in an alternate spot it can make a lying cat stand." [Wikipedia:Tegmental_pontine_reticular_nucleus] synonym: "nucleus reticularis tegmenti pontis" EXACT OMO:0003011 [FMA:72471, FMA:TA] synonym: "reticular tegmental nucleus" EXACT [] synonym: "reticulotegmental nucleus of pons" EXACT [] synonym: "reticulotegmental nucleus of the pons" RELATED [BAMS:RtTg] synonym: "tegmental reticular nucleus" RELATED [BAMS:TRN] synonym: "tegmental reticular nucleus, pontine gray" EXACT [] xref: BAMS:RtTg xref: BAMS:TRN xref: BIRNLEX:882 xref: DHBA:12414 xref: DHBA:12497 xref: EMAPA:35736 xref: FMA:72471 xref: HBA:9167 xref: MA:0001025 xref: MBA:574 xref: neuronames:568 xref: Wikipedia:Tegmental_pontine_reticular_nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002275 ! reticular formation property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} [Term] id: UBERON:0002148 name: locus ceruleus namespace: uberon def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]." [GAID:577, GO:0021703, Wikipedia:Locus_ceruleus] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "blue nucleus" EXACT [BIRNLEX:905] synonym: "caerulean nucleus" EXACT [] synonym: "loci coeruleus" RELATED OMO:0003004 [ZFA:0000539] synonym: "locus caeruleus" EXACT [BIRNLEX:905] synonym: "locus cinereus" RELATED [BTO:0001408] synonym: "locus coeruleu" EXACT [] synonym: "locus coeruleus" EXACT [] synonym: "locus coeruleus (Vicq d'Azyr)" RELATED [NeuroNames:583] synonym: "Noradrenergic cell group A6" EXACT [Noradrenergic_cell_group_A6&oldid=981960774] synonym: "nucleus caeruleus" EXACT OMO:0003011 [FMA:72478, FMA:TA] synonym: "nucleus loci caerulei" RELATED OMO:0003011 [NeuroNames:583] synonym: "nucleus of locus caeruleus" EXACT [] synonym: "nucleus pigmentosus pontis" EXACT [BIRNLEX:905] synonym: "substantia ferruginea" EXACT [BIRNLEX:905] xref: BAMS:CAE xref: BAMS:LC xref: BIRNLEX:905 xref: BM:Pons-LC xref: BTO:0001408 xref: DHBA:12819 xref: DMBA:16972 xref: EFO:0001963 xref: EMAPA:35502 xref: FMA:72478 xref: GAID:577 xref: HBA:9148 xref: MA:0001017 xref: MBA:147 xref: MESH:D008125 xref: NCIT:C97333 xref: neuronames:583 {source="BIRNLEX:905"} xref: SCTID:369016004 xref: TAO:0000539 xref: UMLS:C0023951 {source="ncithesaurus:Locus_Coeruleus", source="BIRNLEX:905"} xref: Wikipedia:Locus_ceruleus xref: ZFA:0000539 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0003023 {notes="check ZFA", source="NIFSTD"} ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png" xsd:anyURI property_value: IAO:0000116 "TODO - check ZFA/pons. also GO says part of dorsorostral pons" xsd:string property_value: RO:0002171 UBERON:0002047 {source="ABA"} property_value: RO:0002171 UBERON:0002267 {source="ABA"} property_value: RO:0002171 UBERON:0002587 {source="ABA"} property_value: RO:0002171 UBERON:0003004 {source="ABA"} [Term] id: UBERON:0002149 name: superior salivatory nucleus namespace: uberon def: "Nucleus containing parasympathetic neurons giving rise to the parasympathetic division of the facial nerve, innervating the salivary glands (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 703)." [BIRNLEX:1131] subset: uberon_slim synonym: "nucleus salivarius superior" RELATED OMO:0003011 [NeuroNames:590] synonym: "nucleus salivatorius cranialis" RELATED OMO:0003011 [NeuroNames:590] synonym: "nucleus salivatorius rostralis" RELATED OMO:0003011 [NeuroNames:590] synonym: "nucleus salivatorius superior" RELATED OMO:0003011 [NeuroNames:590] synonym: "superior salivary nucleus" EXACT [GO:0021753] xref: BAMS:SSN xref: BAMS:SuS xref: BIRNLEX:1131 xref: DHBA:12435 xref: EHDAA2:0004646 xref: EMAPA:37756 {source="MA:th"} xref: FMA:72482 xref: HBA:9194 xref: MA:0001027 xref: MBA:462 xref: neuronames:590 {source="BIRNLEX:1131"} xref: SCTID:369028007 xref: UMLS:C0175447 {source="BIRNLEX:1131"} xref: Wikipedia:Superior_salivatory_nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata relationship: part_of UBERON:0003023 ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png" xsd:anyURI property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} [Term] id: UBERON:0002150 name: superior cerebellar peduncle namespace: uberon def: "A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)." [BIRNLEX:1711] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brachium conjunctivum" EXACT [BIRNLEX:1711] synonym: "crus cerebello-cerebrale" RELATED OMO:0003011 [NeuroNames:1736] synonym: "pedunculus cerebellaris cranialis" RELATED OMO:0003011 [NeuroNames:1736] synonym: "pedunculus cerebellaris rostralis" RELATED OMO:0003011 [NeuroNames:1736] synonym: "pedunculus cerebellaris superior" RELATED OMO:0003011 [Wikipedia:Superior_cerebellar_peduncle] synonym: "scp" RELATED OMO:0003000 [MBA:326] synonym: "superior cerebelar peduncles" RELATED MISSPELLING [MBA:326] synonym: "superior cerebellar peduncle (brachium conjuctivum)" RELATED [BAMS:scp] synonym: "superior cerebellar peduncle (brachium conjunctivum)" RELATED [BAMS:scp] synonym: "superior cerebellar peduncle (Galen, Stilling)" RELATED [NeuroNames:1736] synonym: "superior peduncle" RELATED [Wikipedia:Superior_cerebellar_peduncle] synonym: "tractus cerebello-rubralis" RELATED OMO:0003011 [NeuroNames:1736] synonym: "tractus cerebello-tegmentalis mesencephali" RELATED OMO:0003011 [NeuroNames:1736] xref: BAMS:5 xref: BAMS:scp xref: BIRNLEX:1711 xref: BM:BC xref: DHBA:12354 xref: DMBA:17793 xref: HBA:9297 xref: MA:0002746 xref: MBA:326 xref: neuronames:1736 {source="BIRNLEX:1711"} xref: SCTID:279218008 xref: UMLS:C0152391 {source="BIRNLEX:1711"} xref: Wikipedia:Superior_cerebellar_peduncle is_a: UBERON:0007416 ! cerebellar peduncle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png" xsd:anyURI property_value: IAO:0000116 "we follow NIF in dividing this into 3 parts. This allows for consistency with ABA" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "we make the TAO class disjoint for now as it's not clear if this is the analagous structure" xsd:string {external_ontology="TAO"} [Term] id: UBERON:0002151 name: pontine nuclear group namespace: uberon def: "Nuclei in the basal pons, intermingled among the descending axons from the cortex, that receive neocrotcial input and give rise to many axons that cross the midline to enter the contralateral cerebellum (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 135)." [BIRNLEX:1516] subset: human_reference_atlas subset: uberon_slim synonym: "nuclei brachii pontis" RELATED OMO:0003011 [NeuroNames:617] synonym: "nuclei pontis" RELATED OMO:0003011 [BTO:0003396, Wikipedia:Pontine_nuclei] synonym: "nucleus pontis" RELATED OMO:0003011 [NeuroNames:617] synonym: "pontine gray" EXACT [BIRNLEX:1516] synonym: "pontine gray matter" RELATED [BTO:0003396] synonym: "pontine grey matter" RELATED [BAMS:PG] synonym: "pontine nuclear complex" EXACT [BIRNLEX:1516] synonym: "pontine nuclear group" EXACT [FMA:72512] synonym: "pontine nuclei" EXACT [] synonym: "pontine nucleus" EXACT [] xref: BAMS:PG xref: BAMS:Pn xref: BIRNLEX:1516 xref: BM:Pons-PGr xref: BTO:0003396 xref: DHBA:12406 xref: EMAPA:35692 xref: FMA:72512 xref: HBA:9133 xref: MA:0001021 xref: MBA:931 xref: neuronames:617 {source="BIRNLEX:1516"} xref: SCTID:304942009 xref: UMLS:C0228448 {source="BIRNLEX:1516"} xref: Wikipedia:Pontine_nuclei is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002567 ! basal part of pons property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002152 name: middle cerebellar peduncle namespace: uberon def: "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the pons, consisting of a very large bundle of fibers originating in the pontine nuclei projecting to the cerebellum (MM)." [BIRNLEX:1529] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "brachium pontis" EXACT [BIRNLEX:1529] synonym: "brachium pontis (stem of middle cerebellar peduncle)" RELATED [BAMS:bp] synonym: "crus cerebelli ad pontem" RELATED OMO:0003011 [NeuroNames:620] synonym: "crus ponto-cerebellare" RELATED OMO:0003011 [NeuroNames:620] synonym: "mid-cerebellar peduncle" RELATED [NeuroNames:620] synonym: "pedunculus cerebellaris medialis" RELATED OMO:0003011 [NeuroNames:620] synonym: "pedunculus cerebellaris medius" RELATED OMO:0003011 [Wikipedia:Middle_cerebellar_peduncle] synonym: "pedunculus cerebellaris pontinus" RELATED OMO:0003011 [NeuroNames:620] xref: BAMS:BP xref: BAMS:bp xref: BAMS:mcp xref: BIRNLEX:1529 xref: BM:Pons-BP xref: DHBA:12768 xref: FMA:72515 xref: HBA:9294 xref: MA:0002745 xref: MBA:78 xref: MESH:D065837 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:620 {source="BIRNLEX:1529"} xref: NIFSTD_RETIRED:birnlex_1699 xref: SCTID:279219000 xref: UMLS:C0152392 {source="BIRNLEX:1529"} xref: Wikipedia:Middle_cerebellar_peduncle is_a: UBERON:0007416 ! cerebellar peduncle is_a: UBERON:0019292 ! white matter of pons relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0002567 {source="FMA"} ! basal part of pons property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002153 name: fastigial nucleus namespace: uberon alt_id: UBERON:0008997 def: "The most medial of the cerebellar nuclei; it receives its afferent input from Purkinje cells of the flocculonodular lobe and the vermis, and most of its efferent connections travel via the inferior cerebellar peduncle to the vestibular nuclei and to the medullary reticular formation." [ISBN:0-683-40008-8, MP:0009983] subset: pheno_slim subset: uberon_slim synonym: "fasciculosus thalamic nucleus" RELATED [BAMS:Fas] synonym: "fastigial cerebellar nucleus" RELATED [NeuroNames:690] synonym: "medial (fastigial) nucleus" EXACT [] synonym: "medial cerebellar nucleus" EXACT [] synonym: "medial nucleus of cerebellum" RELATED [NeuroNames:690] synonym: "nucleus (motorius) tecti cerebelli" RELATED OMO:0003011 [NeuroNames:690] synonym: "nucleus fastigiatus" RELATED OMO:0003011 [NeuroNames:690] synonym: "nucleus fastigii" EXACT [BTO:0003839] synonym: "nucleus fastigii" RELATED OMO:0003011 [Wikipedia:Fastigial_nucleus] synonym: "nucleus fastigii cerebelli" RELATED OMO:0003011 [NeuroNames:690] synonym: "nucleus fastigius cerebelli" RELATED OMO:0003011 [NeuroNames:690] synonym: "roof nucleus-1" EXACT [] xref: BAMS:C8M xref: BAMS:Fas xref: BAMS:FN xref: BIRNLEX:1146 xref: BM:CB-CBM xref: BTO:0003839 xref: DHBA:12402 xref: DMBA:16823 xref: FMA:72537 xref: HBA:12948 xref: MA:0001009 xref: MBA:989 xref: neuronames:690 {source="BIRNLEX:1146"} xref: SCTID:279224002 xref: UMLS:C0175490 {source="BIRNLEX:1146"} xref: VHOG:0001699 xref: Wikipedia:Fastigial_nucleus is_a: UBERON:0008995 ! nucleus of cerebellar nuclear complex relationship: part_of UBERON:0002130 ! cerebellar nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png" xsd:anyURI property_value: RO:0002171 UBERON:0002132 {source="ABA"} property_value: UBPROP:0000003 "One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001699", ontology="VHOG", source="ISBN:978-0471210054 Butler AB, Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.260-261", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002154 name: lateral reticular nucleus namespace: uberon def: "A nucleus of the lateral medullary nuclear complex." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim subset: vertebrate_core synonym: "lateral reticular nuclei" RELATED OMO:0003004 [ZFA:0000535] synonym: "lateral reticular nucleus (medulla)" EXACT [] synonym: "nucleus reticularis lateralis medullae oblongatae" RELATED OMO:0003011 [Wikipedia:Lateral_reticular_nucleus] xref: BAMS:LRN xref: BAMS:LRt xref: BM:LR xref: EMAPA:35484 xref: FMA:72574 xref: HBA:9616 xref: MA:0001047 xref: MBA:235 xref: neuronames:727 xref: NLXANAT:20081246 xref: TAO:0000535 xref: Wikipedia:Lateral_reticular_nucleus xref: ZFA:0000535 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata relationship: part_of UBERON:0009775 {source="FMA"} ! lateral medullary reticular complex property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} property_value: UBPROP:0000012 "in ABA this is disjoint from MDR, but we relax this here to accomodate FMA" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0002155 name: gigantocellular nucleus namespace: uberon def: "Nucleus located in the rostral ventrolateral medulla. The PGL was originally identified by cytoarchitectural criteria in the human medulla (Olszewski and Baxter, 1954). In humans, the PGL is located in the ventrolateral quadrant of the rostral medullary tegmentum between the nucleus subtrigeminalis caudally, trapezoid body and the superior olive rostrally, nucleus gigantocellularis medially, spinothalamic tract fibers laterally, inferior olive ventrally, and the nucleus ambiguous dorsally (Olszewski and Baxter, 1954). In the rat, the PGL has been further subdivided into retrofacial PGL (caudal to the facial nucleus), and more rostrally located juxtafacial PGL (medial to the facial nucleus), based upon different connectivity." [NLXANAT:1005001] subset: uberon_slim synonym: "gigantocellular group" EXACT [HBA:GiRt] synonym: "gigantocellular reticular nuclei" EXACT [DHBA:GiRt] synonym: "gigantocellular reticular nucleus" EXACT [] synonym: "nucleus gigantocellularis" EXACT OMO:0003011 [FMA:72576, FMA:TA] synonym: "nucleus reticularis gigantocellularis" RELATED [NLXANAT:1005001] xref: BAMS:Gi xref: BAMS:GRN xref: DHBA:12625 xref: EMAPA:35378 xref: FMA:72576 xref: HBA:9597 xref: HBA:9602 xref: MA:0001037 xref: MBA:1048 xref: neuronames:730 xref: NLXANAT:1005001 xref: Wikipedia:Gigantocellular_nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} [Term] id: UBERON:0002156 name: nucleus raphe magnus namespace: uberon def: "The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]." [Wikipedia:Nucleus_raphe_magnus] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "magnus raphe nucleus" EXACT [] synonym: "nucleus raphC) magnus" RELATED [BAMS:RM] synonym: "nucleus raphes magnus" EXACT OMO:0003011 [FMA:72584, FMA:TA] synonym: "nucleus raphes magnus" RELATED OMO:0003011 [Wikipedia:Nucleus_raphe_magnus] synonym: "raphe magnus" RELATED [Wikipedia:Nucleus_raphe_magnus] synonym: "raphe magnus nucleus" EXACT [BIRNLEX:1363] synonym: "red nucleus, magnocellular division" RELATED [BAMS:RM] xref: BAMS:RM xref: BAMS:RMg xref: BIRNLEX:1363 xref: DHBA:12642 xref: EFO:0002518 xref: EMAPA:35720 xref: FMA:72584 xref: HBA:9643 xref: MA:0001024 xref: MBA:206 xref: MESH:D065846 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:739 {source="BIRNLEX:1363"} xref: UMLS:C0175515 {source="BIRNLEX:1363"} xref: Wikipedia:Nucleus_raphe_magnus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 {source="FMA", source="NIF", source="Wikipedia"} ! medullary raphe nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI property_value: RO:0002171 UBERON:0002157 {source="ABA"} property_value: RO:0002171 UBERON:0002684 {source="ABA"} [Term] id: UBERON:0002157 name: nucleus raphe pallidus namespace: uberon def: "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]." [Wikipedia:Nucleus_raphe_pallidus] subset: pheno_slim subset: uberon_slim synonym: "nucleus raphC) pallidus" RELATED [BAMS:RPA] synonym: "nucleus raphes pallidus" EXACT OMO:0003011 [FMA:72586, FMA:TA] synonym: "nucleus raphes pallidus" RELATED OMO:0003011 [Wikipedia:Nucleus_raphe_pallidus] synonym: "pallidal raphe nucleus" EXACT [] synonym: "raphe pallidus nucleus" EXACT [] xref: BAMS:RPA xref: BAMS:RPa xref: BIRNLEX:1375 xref: DHBA:12644 xref: EMAPA:35722 xref: FMA:72586 xref: HBA:9649 xref: MA:0001051 xref: MBA:230 xref: MESH:D065848 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:741 {source="BIRNLEX:1375"} xref: UMLS:C0175517 {source="BIRNLEX:1375"} xref: Wikipedia:Nucleus_raphe_pallidus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI property_value: RO:0002171 UBERON:0002156 {source="ABA"} property_value: RO:0002171 UBERON:0002684 {source="ABA"} [Term] id: UBERON:0002158 name: principal inferior olivary nucleus namespace: uberon def: "The inferior olivary nucleus that consists of the major laminar structure." [Wikipedia:Olivary_body#Olivary_nuclei] synonym: "chief inferior olivary nucleus" EXACT [] synonym: "convoluted olive" EXACT [NLXANAT:20081248] synonym: "inferior olivary complex principal olive" RELATED [BAMS:IOpr] synonym: "inferior olivary complex, principal olive" EXACT [] synonym: "inferior olive principal nucleus" EXACT [] synonym: "inferior olive, principal nucleus" EXACT [] synonym: "main olivary nucleus" EXACT [] synonym: "nucleus olivaris principalis" EXACT OMO:0003011 [FMA:72592, FMA:TA] synonym: "principal nucleus of inferior olive" EXACT [] synonym: "principal olivary nucleus" EXACT [] synonym: "principal olive" EXACT [NLXANAT:20081248] xref: BAMS:IOPr xref: BAMS:IOpr xref: BAMS:PrIO xref: DHBA:12610 xref: EMAPA:37615 {source="MA:th"} xref: FMA:72592 xref: HBA:9564 xref: MA:0001046 xref: neuronames:749 xref: NLXANAT:20081248 xref: Wikipedia:Olivary_body#Olivary_nuclei is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0002159 name: medial accessory inferior olivary nucleus namespace: uberon def: "The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally." [Wikipedia:Olivary_body#Olivary_nuclei] synonym: "inferior olivary complex, medial accessory olive" EXACT [] synonym: "inferior olive medial nucleus" EXACT [] synonym: "inferior olive, medial nucleus" EXACT [] synonym: "medial accessory olivary nucleus" EXACT [] synonym: "nucleus olivaris accessorius medialis" EXACT OMO:0003011 [FMA:72594, FMA:TA] xref: BAMS:IOM xref: BAMS:MIO xref: DHBA:12605 xref: EMAPA:37614 {source="MA:th"} xref: FMA:72594 xref: HBA:9563 xref: MA:0001045 xref: neuronames:751 xref: SCTID:369069003 xref: Wikipedia:Olivary_body#Olivary_nuclei is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0002160 name: nucleus prepositus namespace: uberon synonym: "nucleus praepositus" EXACT [BIRNLEX:2652] synonym: "nucleus praepositus hypoglossi" RELATED OMO:0003011 [NeuroNames:758] synonym: "nucleus prepositus hypoglossi" RELATED OMO:0003011 [NeuroNames:758] synonym: "nucleus prepositus hypoglossus" RELATED [] synonym: "prepositus hypoglossal nucleus" EXACT [] synonym: "prepositus nucleus" EXACT [] synonym: "prepositus nucleus (Marburg)" RELATED [NeuroNames:758] synonym: "PrP" BROAD OMO:0003000 [BIRNLEX:2652, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Pr xref: BAMS:PRP xref: BAMS:PrP xref: BIRNLEX:2652 xref: DHBA:12615 xref: EMAPA:36622 xref: FMA:72596 xref: HBA:9639 xref: MA:0001023 xref: MBA:169 xref: neuronames:758 {source="BIRNLEX:2652"} xref: SCTID:369078009 xref: UMLS:C0152399 {source="BIRNLEX:2652"} xref: UMLS:C1289505 {source="BIRNLEX:2652"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata property_value: RO:0002171 UBERON:0002881 {source="ABA"} [Term] id: UBERON:0002161 name: gracile nucleus namespace: uberon def: "Nucleus in the caudal medulla that receive projections primarily from ipsilateral dorsal root ganglion cells via the posterior column of the spinal cord." [BIRNLEX:2643] subset: uberon_slim synonym: "Goll's nucleus" EXACT [] synonym: "golls nucleus" EXACT [BIRNLEX:2643] synonym: "gracile nucleus (Goll)" RELATED [NeuroNames:766] synonym: "gracile nucleus of the medulla" RELATED [NeuroNames:766] synonym: "gracile nucleus, general" RELATED [NeuroNames:766] synonym: "gracile nucleus, principal part" RELATED [BAMS:GR] synonym: "nucleus gracilis" EXACT [BIRNLEX:2643] synonym: "nucleus gracilis" RELATED OMO:0003011 [Wikipedia:Gracile_nucleus] xref: BAMS:GR xref: BAMS:Gr xref: BIRNLEX:2643 xref: BM:Me-Gr xref: DHBA:12592 xref: EMAPA:37593 {source="MA:th"} xref: EV:0100280 xref: FMA:72602 xref: HBA:9554 xref: MA:0001038 xref: MBA:1039 xref: neuronames:766 {source="BIRNLEX:2643"} xref: SCTID:369071003 xref: UMLS:C0228546 {source="BIRNLEX:2643"} xref: Wikipedia:Gracile_nucleus is_a: UBERON:0018238 {source="ABA", source="ISBN:978-1-4615-0037-7", source="WP"} ! dorsal column nucleus relationship: part_of UBERON:0001896 ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray688.png" xsd:anyURI property_value: RO:0002171 UBERON:0002045 {source="ABA"} property_value: UBPROP:0000008 "in species with reduced hindlimbs (e.g. cetaceans) the size of this nucleus is reduced" xsd:string [Term] id: UBERON:0002162 name: area postrema namespace: uberon def: "A small, rounded eminence on each side of the fourth ventricle, which receives nerve fibers from the solitary nucleus , spinal cord, and adjacent areas of the medulla. The area postrema lies outside the blood-brain barrier and its functions include acting as an emetic chemoreceptor." [MESH:A08.186.211.132.810.406.286, Wikipedia:Area_postrema] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "AP" BROAD OMO:0003000 [BIRNLEX:2636, NIFSTD:NeuroNames_abbrevSource] synonym: "chemoreceptor trigger zone" RELATED [NeuroNames:772] xref: BAMS:AP xref: BIRNLEX:2636 xref: BTO:0003425 xref: DHBA:12807 xref: EMAPA:35143 xref: FMA:72607 xref: GAID:591 xref: HBA:9522 xref: MA:0001034 xref: MBA:207 xref: MESH:D031608 xref: neuronames:772 {source="BIRNLEX:2636"} xref: SCTID:369039005 xref: TAO:0005146 xref: UMLS:C0228530 {source="BIRNLEX:2636"} xref: UMLS:C1289468 {source="BIRNLEX:2636"} xref: Wikipedia:Area_postrema xref: ZFA:0005146 is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ relationship: part_of UBERON:0001896 {source="MA", source="ZFA"} ! medulla oblongata relationship: part_of UBERON:0002422 ! fourth ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png" xsd:anyURI property_value: RO:0002171 UBERON:0002126 {source="ABA"} property_value: RO:0002171 UBERON:0002591 {source="ABA"} property_value: RO:0002171 UBERON:0002610 {source="ABA"} property_value: RO:0002171 UBERON:0002864 {source="ABA"} property_value: RO:0002171 UBERON:0002866 {source="ABA"} property_value: RO:0002171 UBERON:0002873 {source="ABA"} property_value: RO:0002171 UBERON:0007633 {source="ABA"} property_value: UBPROP:0000001 "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005146", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000009 "vomiting center in humans" xsd:string {source="WP"} [Term] id: UBERON:0002163 name: inferior cerebellar peduncle namespace: uberon def: "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the open medulla, consisting of a large bundle of fibers projecting to and projecting from the cerebellum. The icp is continuous with the dorsal spinocerebellar tract and also contains a large number of fibers originating in the inferior olivary complex (MM)." [BIRNLEX:1691] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "corpus restiforme" EXACT OMO:0003011 [FMA:72615, FMA:TA] synonym: "crus cerebelli ad medullam oblongatam" RELATED OMO:0003011 [NeuroNames:781] synonym: "crus medullo-cerebellare" RELATED OMO:0003011 [NeuroNames:781] synonym: "inferior cerebellar peduncle (restiform body)" RELATED [BAMS:icp] synonym: "inferior cerebellar peduncle (Ridley)" RELATED [NeuroNames:781] synonym: "inferior peduncle" RELATED [Wikipedia:Inferior_cerebellar_peduncle] synonym: "pedunculus cerebellaris caudalis" RELATED OMO:0003011 [NeuroNames:781] synonym: "pedunculus cerebellaris inferior" RELATED OMO:0003011 [Wikipedia:Inferior_cerebellar_peduncle] synonym: "restiform body" EXACT [BIRNLEX:1691] xref: BAMS:icp xref: BIRNLEX:1691 xref: BM:RB xref: DHBA:12741 xref: DMBA:17772 xref: FMA:72615 xref: HBA:9291 xref: MA:0002744 xref: MBA:1123 xref: neuronames:781 {source="BIRNLEX:1691"} xref: NIFSTD_RETIRED:birnlex_1645 xref: SCTID:362418008 xref: UMLS:C0152393 {source="BIRNLEX:1691"} xref: Wikipedia:Inferior_cerebellar_peduncle is_a: UBERON:0007416 ! cerebellar peduncle is_a: UBERON:0014649 ! white matter of medulla oblongata relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002164 name: tectobulbar tract namespace: uberon def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429] subset: vertebrate_core synonym: "tecto-bulbar tract" EXACT [] synonym: "tractus tectobulbaris" RELATED OMO:0003011 [NeuroNames:811] xref: BAMS:tb xref: BIRNLEX:750 xref: DHBA:12791 xref: FMA:72645 xref: neuronames:811 {source="BIRNLEX:750"} xref: SCTID:369265000 xref: TAO:0000446 xref: UMLS:C0152378 {source="BIRNLEX:750"} xref: ZFA:0000446 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002175 name: intermediolateral nucleus namespace: uberon def: "The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]." [Wikipedia:Intermediolateral_nucleus] subset: uberon_slim synonym: "intermediolateral nucleus of spinal cord" EXACT [] synonym: "nucleus intermediolateralis medullae spinalis" EXACT OMO:0003011 [FMA:73915, FMA:TA] synonym: "nucleus intermediolateralis medullae spinalis" RELATED OMO:0003011 [Wikipedia:Intermediolateral_nucleus] synonym: "spinal cord intermediolateral nucleus" EXACT [] xref: EMAPA:36565 xref: FMA:73915 xref: MA:0002753 xref: neuronames:1667 xref: Wikipedia:Intermediolateral_nucleus is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0016578 ! lamina VII of gray matter of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg" xsd:anyURI [Term] id: UBERON:0002176 name: lateral cervical nucleus namespace: uberon def: "A diffusely arranged nucleus located in the dorsal portions of the lateral funiculus at about cervical levels C1-C3; synaptic station for the spinocervicothalamic tract." [http://www.medilexicon.com/medicaldictionary.php?t=61506] xref: BAMS:LatC xref: BAMS:LCN xref: DMBA:17691 xref: EMAPA:37633 {source="MA:th"} xref: FMA:73921 xref: MA:0002755 xref: neuronames:1672 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002179 name: lateral funiculus of spinal cord namespace: uberon def: "The lateral mass of fibers on either side of the spinal cord, between the anterolateral and posterolateral sulci." [http://medical-dictionary.thefreedictionary.com/lateral+funiculus] subset: uberon_slim subset: vertebrate_core synonym: "funiculus lateralis medullae spinalis" RELATED OMO:0003011 [Wikipedia:Lateral_funiculus] synonym: "lateral funiculi" RELATED OMO:0003004 [ZFA:0000533] synonym: "lateral funiculus" EXACT [ZFA:0000533] synonym: "lateral funiculus of spinal cord" EXACT [] synonym: "lateral white column of spinal cord" EXACT [FMA:74000] xref: FMA:74000 xref: neuronames:1673 xref: SCTID:362434006 xref: TAO:0000533 xref: Wikipedia:Lateral_funiculus xref: ZFA:0000533 is_a: UBERON:0006127 ! funiculus of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg" xsd:anyURI [Term] id: UBERON:0002180 name: ventral funiculus of spinal cord namespace: uberon def: "The white substance of the spinal cord lying on either side between the ventral median fissure and the ventral roots of the spinal nerves." [http://medical-dictionary.thefreedictionary.com/ventral+funiculus] subset: uberon_slim subset: vertebrate_core synonym: "anterior funiculus" EXACT [] synonym: "anterior funiculus of spinal cord" EXACT [] synonym: "anterior white column of spinal cord" EXACT [FMA:74003] synonym: "funiculus anterior medullae spinalis" EXACT OMO:0003011 [FMA:74003, FMA:TA] synonym: "ventral funiculi" RELATED OMO:0003004 [ZFA:0000605] synonym: "ventral funiculus" EXACT [ZFA:0000605] synonym: "ventral funiculus of spinal cord" EXACT [] synonym: "ventral white column of spinal cord" EXACT [FMA:74003] xref: FMA:74003 xref: neuronames:1304 xref: NLX:379 xref: SCTID:362429007 xref: TAO:0000605 xref: Wikipedia:Ventral_funiculus xref: ZFA:0000605 is_a: UBERON:0006127 ! funiculus of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg" xsd:anyURI [Term] id: UBERON:0002181 name: substantia gelatinosa namespace: uberon def: "Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells, corresponding to Rexed lamina II." [MESH:A08.186.854.610.800, Wikipedia:Central_gelatinous_substance_of_spinal_cord_of_Rolando] subset: uberon_slim synonym: "central gelatinous substance of spinal cord" EXACT [] synonym: "gelatinous substance of dorsal horn of spinal cord" EXACT [] synonym: "gelatinous substance of posterior horn of spinal cord" EXACT [] synonym: "gelatinous substance of Rolando" EXACT [FMA:74019] synonym: "lamina II of gray matter of spinal cord" EXACT [FMA:68863] synonym: "lamina spinalis II" EXACT OMO:0003011 [FMA:68863, FMA:TA] synonym: "rexed lamina II" EXACT [FMA:68863] synonym: "spinal lamina II" EXACT [FMA:68863] synonym: "substantia gelatinosa cornu posterioris medullae spinalis" EXACT OMO:0003011 [FMA:74019, FMA:TA] synonym: "substantia gelatinosa of spinal cord dorsal horn" EXACT [BIRNLEX:2674] synonym: "substantia gelatinosa of spinal cord posterior horn" RELATED [BIRNLEX:2674] xref: BIRNLEX:2674 xref: EMAPA:36510 xref: EV:0100318 xref: FMA:68863 xref: FMA:74019 xref: GAID:701 xref: MA:0001124 xref: MESH:D013376 xref: NCIT:C12641 xref: neuronames:1635 xref: UMLS:C0038588 {source="ncithesaurus:Substantia_Gelatinosa"} xref: Wikipedia:Central_gelatinous_substance_of_spinal_cord_of_Rolando is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002191 name: subiculum namespace: uberon def: "Part of the hippocampal formation that is bounded by the entorhinal cortex and area CA1. It is characterized on the CA1 border by an abrupt widening of the pyramidal cell layer. A molecular layer is present that is continuous with that of CA1, although the stratum radiatum is no longer present. The stratum oriens is also not present. adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 468)." [BIRNLEX:1305] subset: pheno_slim subset: uberon_slim synonym: "gyrus parahippocampalis" RELATED [BTO:0003087] synonym: "subicular cortex" EXACT [BIRNLEX:1305] synonym: "subiculum cornu ammonis" RELATED [BTO:0003087] synonym: "subiculum hippocampi" EXACT [FMA:74414] xref: BAMS:S xref: BAMS:SUB xref: BIRNLEX:1305 xref: BM:Tel-Cx-SB xref: BTO:0003087 xref: DHBA:10301 xref: DHBA:10302 xref: DMBA:16163 xref: EMAPA:35832 xref: FMA:74414 xref: HBA:12896 xref: MA:0000960 xref: MBA:502 xref: NCIT:C33648 xref: neuronames:188 xref: PBA:10054 xref: PBA:128012354 xref: SCTID:369097009 xref: UMLS:C0152316 {source="ncithesaurus:Subiculum"} xref: Wikipedia:Subiculum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif" xsd:anyURI property_value: RO:0002171 UBERON:0001953 {source="ABA"} property_value: RO:0002171 UBERON:0002728 {source="ABA"} property_value: RO:0002171 UBERON:0004683 {source="ABA"} property_value: UBPROP:0000007 "subicular" xsd:string property_value: UBPROP:0000009 "The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction.[Wikipedia:Subiculum]" xsd:string property_value: UBPROP:0000012 "In ABA SUB is part of the retrohippocampal region, along with the entorhinal area. this is in the hippocampal formation but not the hippocampal region" xsd:string {external_ontology="ABA"} property_value: UBPROP:0000012 "in DHBA subicular cortex is divided into subiculum, prosubiculum and supracallosal subiculum" xsd:string [Term] id: UBERON:0002192 name: ventricular system choroidal fissure namespace: uberon def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]." [ISBN:0815318960, ZFA:0001075] subset: vertebrate_core synonym: "chorioid fissure" RELATED [FMA:74512] synonym: "chorioidal fissure" RELATED [FMA:74512] synonym: "choroid fissure" RELATED INCONSISTENT [FMA:74512, TAO:0001075] synonym: "choroid invagination" RELATED [EHDAA2:0000250] synonym: "choroidal fissure" RELATED [FMA:74512] synonym: "choroidal fissure of lateral ventricle" EXACT [FMA:83715] synonym: "choroidal fissures" RELATED OMO:0003004 [ZFA:0001075] synonym: "lateral ventricle choroid fissure" EXACT [EHDAA2:0000250] synonym: "ventricular system choroid fissure" EXACT [VHOG:0001756] xref: BAMS:chf xref: BAMS:chfl xref: DHBA:12094 xref: EHDAA2:0000250 xref: EHDAA:7567 xref: EMAPA:17548 xref: EMAPA:17768 xref: FMA:74512 xref: FMA:83715 xref: MBA:116 xref: NCIT:C32311 xref: neuronames:24 xref: TAO:0001075 xref: UMLS:C0262212 {source="ncithesaurus:Choroidal_Fissure"} xref: VHOG:0001756 xref: ZFA:0001075 relationship: part_of UBERON:0005358 ! ventricle of nervous system property_value: IAO:0000116 "relate to lateral ventricle?" xsd:string property_value: IAO:0000232 "not to be confused with optic fissure. the choroidal fissure is a subarachnoid space (via subarachnoid fissure in FMA)" xsd:string property_value: UBPROP:0000012 "Most ontologies appear to have switched to using less confusing primary terms for optic and choroidal fissues. Still need to check FMA - two possible terms? CARO - is this a groove or a space or a line?" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002196 name: adenohypophysis namespace: uberon def: "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin[ZFA]." [Wikipedia:Adenohypophysis, ZFIN:curator] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "AHP" BROAD OMO:0003000 [BIRNLEX:1581, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypophysis" EXACT [ZFA:0001282] synonym: "anterior lobe (hypophysis)" EXACT [] synonym: "anterior lobe of hypophysis" EXACT [] synonym: "anterior lobe of pituitary" EXACT [] synonym: "anterior lobe of pituitary gland" EXACT [] synonym: "anterior lobe of the pituitary" RELATED [BAMS:APit] synonym: "anterior pituitary" EXACT [] synonym: "anterior pituitary gland" RELATED [BTO:0000040] synonym: "cranial lobe" RELATED [BTO:0000496] synonym: "lobus anterior" RELATED OMO:0003011 [NeuroNames:407] synonym: "lobus anterior (glandula pituitaria)" EXACT OMO:0003011 [FMA:74627, FMA:TA] synonym: "lobus anterior hypophysis" EXACT OMO:0003011 [FMA:74627, FMA:TA] synonym: "pituitary anterior lobe" RELATED [EMAPA:17514] synonym: "pituitary gland, anterior lobe" EXACT [] synonym: "pituitary glandanterior lobe" RELATED [BAMS:AL] synonym: "rostral lobe" RELATED [BTO:0000496] xref: AAO:0010540 xref: BAMS:AHY xref: BAMS:AL xref: BAMS:APit xref: BIRNLEX:1581 xref: BM:AHy xref: BTO:0000040 xref: CALOHA:TS-0794 xref: EFO:0000230 xref: EHDAA2:0000109 xref: EMAPA:17514 xref: FMA:74627 xref: MA:0000177 xref: MESH:D010903 xref: NCIT:C12772 xref: neuronames:407 {source="BIRNLEX:1581"} xref: SCTID:245532007 xref: TAO:0001282 xref: UMLS:C0032008 {source="ncithesaurus:Anterior_Lobe_of_the_Pituitary_Gland", source="BIRNLEX:1581"} xref: UMLS:C1280369 {source="BIRNLEX:1581"} xref: VHOG:0000141 xref: Wikipedia:Adenohypophysis xref: ZFA:0001282 relationship: part_of UBERON:0000007 ! pituitary gland property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png" xsd:anyURI property_value: UBPROP:0000001 "Region of the pituitary gland derived from the buccal protrusion consisting of three regions.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010540", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. Herzog et al, 2004.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001282", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000141", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish" xsd:string {source="ZFA"} property_value: UBPROP:0000008 "While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke's pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head[NCBIBook:NBK53175]." xsd:string [Term] id: UBERON:0002197 name: median eminence of neurohypophysis namespace: uberon def: "Elevation on the ventral surface of the brain located at the zone of attachment between the hypothalamic floor and the hypophysis (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg. 446)." [BIRNLEX:925] subset: pheno_slim subset: uberon_slim synonym: "eminentia medialis (Shantha)" RELATED OMO:0003011 [NeuroNames:402] synonym: "eminentia mediana" RELATED OMO:0003011 [NeuroNames:402] synonym: "eminentia mediana hypothalami" EXACT OMO:0003011 [FMA:74634, FMA:TA] synonym: "eminentia mediana hypothalami" RELATED OMO:0003011 [Wikipedia:Median_eminence] synonym: "eminentia postinfundibularis" RELATED OMO:0003011 [NeuroNames:402] synonym: "ME" BROAD OMO:0003000 [BIRNLEX:925, NIFSTD:NeuroNames_abbrevSource] synonym: "medial eminence" RELATED [NeuroNames:402] synonym: "median eminence" EXACT [] synonym: "median eminence of hypothalamus" EXACT [] synonym: "median eminence of posterior lobe of pituitary gland" EXACT [] synonym: "median eminence of tuber cinereum" EXACT [] xref: AAO:0010539 xref: BAMS:ME xref: BIRNLEX:925 xref: BM:ME xref: BTO:0001954 xref: DHBA:13338 xref: DMBA:15689 xref: EHDAA2:0001080 xref: EHDAA:7540 xref: EMAPA:17521 xref: FMA:74634 xref: GAID:463 xref: HBA:12916 xref: MA:0000859 xref: MBA:10671 xref: MESH:D008473 xref: neuronames:402 {source="BIRNLEX:925"} xref: SCTID:369121004 xref: UMLS:C0025056 {source="BIRNLEX:925"} xref: VHOG:0001179 xref: Wikipedia:Median_eminence is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010134 ! secretory circumventricular organ relationship: part_of UBERON:0002198 ! neurohypophysis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: UBPROP:0000001 "Region of the neurohypophysis.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010539", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001179", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002198 name: neurohypophysis namespace: uberon def: "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon." [MP:0004164] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "infundibular process" EXACT [FMA:74628] synonym: "lobus nervosus" RELATED OMO:0003011 [NeuroNames:401] synonym: "lobus nervosus neurohypophysis" EXACT OMO:0003011 [FMA:74628, FMA:TA] synonym: "lobus posterior" RELATED OMO:0003011 [NeuroNames:401] synonym: "lobus posterior (glandula pituitaria)" EXACT OMO:0003011 [FMA:74628, FMA:TA] synonym: "lobus posterior hypophysis" EXACT OMO:0003011 [FMA:74628, FMA:TA] synonym: "neural lobe" EXACT [FMA:74628] synonym: "neural lobe of pituitary" EXACT [BIRNLEX:1586] synonym: "neural lobe of pituitary gland" EXACT [FMA:74628] synonym: "neuro hypophysis" EXACT [] synonym: "neurohypophysis" EXACT [] synonym: "NHP" BROAD OMO:0003000 [BIRNLEX:1586, NIFSTD:NeuroNames_abbrevSource] synonym: "pituitary gland neural lobe" RELATED [BAMS:NL] synonym: "pituitary gland, neural lobe" RELATED [NeuroNames:401] synonym: "pituitary gland, posterior lobe" EXACT [] synonym: "posterior lobe of hypophysis" RELATED [NeuroNames:401] synonym: "posterior lobe of pituitary" EXACT [] synonym: "posterior lobe of pituitary gland" EXACT [FMA:74628] synonym: "posterior pituitary" EXACT [] synonym: "posterior pituitary gland" RELATED [BTO:0000937] xref: AAO:0010537 xref: BAMS:NHP xref: BAMS:NHY xref: BAMS:NL xref: BAMS:PPit xref: BIRNLEX:1586 xref: BM:NY xref: BTO:0000937 xref: CALOHA:TS-0815 xref: DMBA:15691 xref: EHDAA2:0001271 xref: EHDAA:7536 xref: EMAPA:17519 xref: FMA:74628 xref: MA:0000178 xref: MESH:D010904 xref: NCIT:C12773 xref: neuronames:401 {source="BIRNLEX:1586"} xref: SCTID:245527006 xref: TAO:0001271 xref: UMLS:C0032009 {source="ncithesaurus:Posterior_Lobe_of_the_Pituitary_Gland", source="BIRNLEX:1586"} xref: UMLS:C1280368 {source="BIRNLEX:1586"} xref: VHOG:0000142 xref: Wikipedia:Neurohypophysis xref: ZFA:0001271 is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ relationship: part_of UBERON:0000007 {source="ZFA"} ! pituitary gland property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG" xsd:anyURI property_value: IAO:0000116 "request magnocellular cell from CL. Request oxytocin secretion from GO. Notes: 'The hypophysis or pituitary gland is derived, in part from an ectodermal outpocketing of the stomodeum (Rathke's Pouch) and in part from the floor of the diencephalon'" xsd:string {source="http://syllabus.med.unc.edu/courseware/embryo_images/"} property_value: RO:0002175 NCBITaxon:117569 {source="Ariens, p. 1192"} property_value: UBPROP:0000001 "The infundibular part of the pituitary gland consisting of two regions.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010537", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000142", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "todo - resolve EMAPA and EHDAA2 models, include future neurohypophysis (TS15-19)? relationship to infundibular recess of 3rd ventricle (TS15-19)" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0002206 name: mammillary body namespace: uberon def: "One of two hemispherical bulges on the base of the posterior hypothalamus (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 455)." [BIRNLEX:865] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "corpora mamillaria" RELATED OMO:0003011 [NeuroNames:412] synonym: "corpora mammillaria" RELATED OMO:0003011 [NeuroNames:412] synonym: "corpus mamillare" EXACT [ZFA:0000334] synonym: "corpus mamillare" RELATED OMO:0003011 [Wikipedia:Mammillary_body] synonym: "corpus mamillaris" RELATED OMO:0003011 [NeuroNames:412] synonym: "corpus mammillare" RELATED OMO:0003011 [NeuroNames:412] synonym: "mammillary area" RELATED [DMBA:Mam] synonym: "MMB" BROAD OMO:0003000 [BIRNLEX:865, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:MB xref: BAMS:MBO xref: BAMS:mmb xref: BIRNLEX:865 xref: DHBA:15546 xref: DMBA:15723 xref: EMAPA:35542 xref: FMA:74877 xref: GAID:652 xref: HBA:12909 xref: MA:0000174 xref: MBA:331 xref: MESH:D008326 xref: NCIT:C33052 xref: neuronames:412 {source="BIRNLEX:865"} xref: SCTID:279306001 xref: TAO:0000334 xref: UMLS:C0024670 {source="BIRNLEX:865", source="ncithesaurus:Mamillary_Body"} xref: UMLS:C1305759 {source="BIRNLEX:865"} xref: Wikipedia:Mammillary_body xref: ZFA:0000334 relationship: part_of UBERON:0000349 {source="GO"} ! limbic system relationship: part_of UBERON:0002272 {source="ABA"} ! medial zone of hypothalamus relationship: part_of UBERON:0002770 {source="GO definition"} ! posterior hypothalamic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png" xsd:anyURI property_value: RO:0002171 UBERON:0001935 {source="ABA"} property_value: RO:0002171 UBERON:0002035 {source="ABA"} property_value: RO:0002171 UBERON:0002634 {source="ABA"} property_value: RO:0002171 UBERON:0002706 {source="ABA"} property_value: RO:0002175 NCBITaxon:117569 {source="Hardisty, p. 320-1"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002211 name: nerve root namespace: uberon def: "A continuation of the neuron projection bundle component of a nerve inside, crossing or immediately outside the central nervous system." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/286] subset: human_reference_atlas subset: uberon_slim synonym: "initial segment of nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "radix nervi" EXACT OMO:0003011 [] xref: FMA:5981 xref: FMA:82524 xref: NCIT:C54024 xref: NLX:144250 xref: SCTID:362295007 xref: UMLS:C0228084 {source="ncithesaurus:Nerve_Root"} xref: Wikipedia:Nerve_root is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001016 {comment="EDITOR_NOTE we do not commit to CNS or PNS to allow for flexibility with this class"} ! nervous system property_value: IAO:0000116 "We consider cranial nerve roots to be primarily CNS structures, but model spinal nerve roots as PNS structures, due to the existence of ganglia on the roots." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The continuation of the neurite bundle and associated glia of a nerve, inside the central nervous system[FBbt:00007602, FBC:DOS]." xsd:string {source="FBbt:00007602, FBC:DOS"} property_value: UBPROP:0000012 "FMA has 'central zone of nerve' which is the superclass of cranial nerve tracts, which the FMA sometimes calls roots" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002212 name: macula of saccule of membranous labyrinth namespace: uberon def: "The oval neuroepithelial sensory receptor in the anterior wall of the saccule; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies." [MGI:anna, MP:0004330] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "macula of saccule" EXACT [] synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula saccule" EXACT [ZFA:0007000] synonym: "macula sacculi" EXACT OMO:0003011 [FMA:74944, FMA:TA] synonym: "macula sacculi" RELATED OMO:0003011 [Wikipedia:Macula_of_saccule] synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic] synonym: "saccular macula" EXACT [ZFA:0007000] synonym: "saccular macula of membranous labyrinth" EXACT [] synonym: "saccular maculs" RELATED [] synonym: "saccule macula" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: EMAPA:35534 xref: FMA:74944 xref: MA:0001201 xref: NCIT:C33045 xref: SCTID:362572004 xref: TAO:0007000 xref: UMLS:C0229468 {source="ncithesaurus:Macula_of_Saccule"} xref: Wikipedia:Macula_of_saccule xref: XAO:0004136 xref: ZFA:0007000 relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0002214 name: macula of utricle of membranous labyrinth namespace: uberon def: "The neuroepithelial sensory receptor in the inferolateral wall of the utricle; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies; normally sensitive to linear acceleration in the longitudinal axis of the body and to gravitational influences." [MGI:anna, MP:0004333] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "macula of utricle" EXACT [] synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula utricle" EXACT [ZFA:0000030] synonym: "macula utriculi" EXACT OMO:0003011 [FMA:74960, FMA:TA] synonym: "macula utriculi" RELATED OMO:0003011 [Wikipedia:Macula_of_utricle] synonym: "maculae utricle" RELATED OMO:0003004 [ZFA:0000030] synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic] synonym: "utricle macula" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "utricular macula" RELATED [] synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: EFO:0003474 xref: EMAPA:35535 xref: FMA:74960 xref: MA:0001203 xref: NCIT:C33046 xref: SCTID:362568003 xref: TAO:0000030 xref: UMLS:C0229451 {source="ncithesaurus:Macula_of_Utricle"} xref: Wikipedia:Macula_of_utricle xref: ZFA:0000030 relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg" xsd:anyURI [Term] id: UBERON:0002219 name: subfornical organ namespace: uberon def: "Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF)." [NLXANAT:100314, Wikipedia:Subfornical_organ] subset: uberon_slim synonym: "organum subfornicale" RELATED OMO:0003011 [Wikipedia:Subfornical_organ] xref: BAMS:SFO xref: BTO:0006266 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12104 xref: EMAPA:35830 xref: FMA:75260 xref: GAID:795 xref: MA:0000940 xref: MBA:338 xref: MESH:D013356 xref: neuronames:454 xref: NLXANAT:100314 xref: Wikipedia:Subfornical_organ is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ relationship: part_of UBERON:0002663 {source="MA-modified"} ! septal nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png" xsd:anyURI property_value: RO:0002171 UBERON:0001934 {source="ABA"} property_value: RO:0002171 UBERON:0002034 {source="ABA"} property_value: RO:0002171 UBERON:0002625 {source="ABA"} property_value: RO:0002171 UBERON:0002689 {source="ABA"} property_value: RO:0002171 UBERON:0002690 {source="ABA"} property_value: RO:0002171 UBERON:0007626 {source="ABA"} property_value: UBPROP:0000009 "induces drinking behavior after stimulation with angiotensin II[MESH]." xsd:string [Term] id: UBERON:0002240 name: spinal cord namespace: uberon def: "Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO)." [BIRNLEX:1709] subset: cumbo subset: efo_slim subset: human_reference_atlas subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cerebro-cerebellar fissure" RELATED [NeuroNames:22] synonym: "cerebrocerebellar fissure" RELATED [NeuroNames:22] synonym: "fissura cerebro-cerebellaris" RELATED OMO:0003011 [NeuroNames:22] synonym: "fissura cerebrocerebellaris" RELATED OMO:0003011 [NeuroNames:22] synonym: "medulla spinalis" RELATED OMO:0003011 [BTO:0001279, Wikipedia:Spinal_cord] synonym: "SpC" RELATED OMO:0003000 [] synonym: "spinal cord structure" RELATED [ZFA:0000075] synonym: "spinal medulla" RELATED [BTO:0001279] xref: AAO:0010151 xref: BAMS:SP xref: BAMS:Spinal xref: BIRNLEX:1709 xref: BM:SpC xref: BTO:0001279 xref: CALOHA:TS-0953 xref: DHBA:12890 xref: DMBA:17651 xref: EFO:0000110 xref: EHDAA2:0001255 xref: EHDAA:2863 xref: EMAPA:17577 xref: EV:0100316 xref: FMA:7647 xref: GAID:695 xref: MA:0000216 xref: MAT:0000183 xref: MESH:D013116 xref: MIAA:0000183 xref: NCIT:C12464 xref: neuronames:22 {source="BIRNLEX:1709"} xref: SCTID:180959008 xref: TAO:0000075 xref: UMLS:C0037925 {source="ncithesaurus:Spinal_Cord", source="BIRNLEX:1709"} xref: VHOG:0000601 xref: Wikipedia:Spinal_cord xref: XAO:0000020 xref: ZFA:0000075 relationship: part_of UBERON:0001017 ! central nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: IAO:0000116 "TODO - add superclass to unify with VNC?" xsd:string property_value: RO:0002171 UBERON:0000955 {exceptions="ZFA", source="https://github.com/obophenotype/uberon/issues/378", status="pending"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010151", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000601", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002245 name: cerebellar hemisphere namespace: uberon def: "A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]." [MP:0009959, Wikipedia:Cerebellar_hemisphere] subset: pheno_slim subset: uberon_slim synonym: "cerebellar hemisphere" EXACT [] synonym: "cerebellar hemispheres" RELATED OMO:0003004 [] synonym: "cerebellum hemisphere" EXACT [] synonym: "hemisphere of cerebellum" EXACT [FMA:76925] synonym: "hemisphere of cerebellum [H II - H X]" EXACT [] synonym: "hemispherium cerebelli" RELATED OMO:0003011 [Wikipedia:Cerebellar_hemisphere] synonym: "hemispherium cerebelli [H II - H X]" EXACT OMO:0003011 [FMA:76925, FMA:TA] synonym: "hemispherium cerebelli [hII-hX]" EXACT OMO:0003011 [FMA:76925, FMA:TA] xref: BAMS:CH xref: BIRNLEX:1575 xref: DHBA:10659 xref: DMBA:16920 xref: EMAPA:35218 xref: FMA:76925 xref: HBA:12930 xref: MA:0000200 xref: MBA:1073 xref: NCIT:C32726 xref: neuronames:1214 xref: SCTID:362411002 xref: UMLS:C0228465 {source="ncithesaurus:Hemisphere_of_the_Cerebellum"} xref: Wikipedia:Cerebellar_hemisphere is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002129 ! cerebellar cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png" xsd:anyURI [Term] id: UBERON:0002246 name: dorsal thoracic nucleus namespace: uberon def: "Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments." [NLXANAT:20090102] comment: Created by Sarah M. Maynard subset: uberon_slim synonym: "Clarke's column" EXACT [] synonym: "Clarke's nuclei" RELATED OMO:0003004 [NLXANAT:20090102] synonym: "Clarke's nucleus" EXACT [] synonym: "dorsal nucleus of Clarke" EXACT [FMA:73912] synonym: "dorsal nucleus of the spinal cord" RELATED [BAMS:DSN] synonym: "dorsal nucleus of the spinal cord rostral part" RELATED [BAMS:DSN] synonym: "nucleus thoracicus dorsalis" EXACT OMO:0003011 [FMA:77023, FMA:TA] synonym: "nucleus thoracicus posterior" EXACT OMO:0003011 [FMA:77023, FMA:TA] synonym: "posterior thoracic nucleus" EXACT [] synonym: "spinal cord dorsal nucleus" EXACT [] synonym: "Stilling-Clarke's column" EXACT [] synonym: "Stilling-Clarke's nucleus" EXACT [] xref: BAMS:DSN xref: EMAPA:37635 {source="MA:th"} xref: FMA:73912 xref: FMA:77023 xref: MA:0001121 xref: NLXANAT:20090102 xref: Wikipedia:Clarke's_column is_a: UBERON:0011777 {source="FMA"} ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord property_value: UBPROP:0000001 "Clarke's column (column of Clarke, dorsal nucleus, posterior thoracic nucleus, nucleus dorsalis of Clarke) is a group of interneurons found in the medial part of Lamina VII, also known as the intermediate zone, of the spinal cord. It is mainly located from the T1 to L3-L4 levels and is an important structure for proprioception[Wikipedia:Posterior_thoracic_nucleus]." xsd:string {source="Wikipedia:Posterior_thoracic_nucleus"} [Term] id: UBERON:0002256 name: dorsal horn of spinal cord namespace: uberon def: "The pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]." [GO:0021516, https://sourceforge.net/tracker/?group_id=36855&atid=440764, MP:0006282, Wikipedia:Posterior_horn_of_spinal_cord] subset: pheno_slim subset: vertebrate_core synonym: "columna grisea posterior medullae spinalis" EXACT OMO:0003011 [FMA:256530, FMA:TA] synonym: "cornu dorsale" EXACT [ZFA:0000649] synonym: "cornu posterius medullae spinalis" EXACT OMO:0003011 [Wikipedia:Posterior_horn_of_spinal_cord] synonym: "dorsal gray column of spinal cord" EXACT [FMA:256530] synonym: "dorsal gray horn" EXACT [BIRNLEX:2667] synonym: "dorsal gray matter of spinal cord" EXACT [FMA:256530] synonym: "dorsal grey column of spinal cord" EXACT [] synonym: "dorsal grey horn" BROAD [EMAPA:18574] synonym: "dorsal horn" BROAD [ZFA:0000649] synonym: "dorsal horn of the spinal cord" RELATED [BAMS:DH] synonym: "dorsal horn spinal cord" EXACT [ZFA:0000649] synonym: "dorsal region of mature spinal cord" BROAD [] synonym: "dorsal region of spinal cord" BROAD [] synonym: "dorsal spinal cord" BROAD [] synonym: "posterior gray column of spinal cord" EXACT [FMA:256530] synonym: "posterior gray horn of spinal cord" EXACT [FMA:256530] synonym: "posterior grey column of spinal cord" EXACT [] synonym: "posterior horn of spinal cord" EXACT [Wikipedia:Posterior_horn_of_spinal_cord] synonym: "spinal cord dorsal horn" EXACT [] synonym: "spinal cord dorsal horns" RELATED OMO:0003004 [] synonym: "spinal cord posterior horn" EXACT [BIRNLEX:2667] xref: BAMS:DH xref: BIRNLEX:2667 xref: BM:SpC-DH xref: EMAPA:18574 xref: EMAPA:35790 xref: FMA:256530 xref: MA:0001119 xref: NCIT:C32473 xref: neuronames:1686 xref: SCTID:180961004 xref: TAO:0000649 xref: UMLS:C0228564 {source="BIRNLEX:2667"} xref: UMLS:C0228575 {source="ncithesaurus:Dorsal_Horn_of_the_Spinal_Cord"} xref: VHOG:0001287 xref: Wikipedia:Posterior_horn_of_spinal_cord xref: ZFA:0000649 is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0002315 ! gray matter of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg" xsd:anyURI [Term] id: UBERON:0002257 name: ventral horn of spinal cord namespace: uberon def: "The ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, https://sourceforge.net/tracker/?group_id=36855&atid=440764, MP:0005112, Wikipedia:Anterior_horn_of_spinal_cord] subset: pheno_slim subset: vertebrate_core synonym: "anterior column" RELATED [Wikipedia:Anterior_horn_of_spinal_cord] synonym: "anterior column of the spinal cord" RELATED [Wikipedia:Anterior_horn_of_spinal_cord] synonym: "anterior gray column of spinal cord" EXACT [FMA:256541] synonym: "anterior gray horn of spinal cord" EXACT [FMA:256541] synonym: "anterior grey column of spinal cord" EXACT [] synonym: "anterior horn" EXACT [BIRNLEX:2668] synonym: "anterior horn (spinal cord)" RELATED [Wikipedia:Anterior_horn_of_spinal_cord] synonym: "columna grisea anterior medullae spinalis" EXACT OMO:0003011 [FMA:256541, FMA:TA] synonym: "cornu anterius medullae spinalis" RELATED OMO:0003011 [Wikipedia:Anterior_horn_of_spinal_cord] synonym: "spinal cord anterior horn" EXACT [BIRNLEX:2668] synonym: "spinal cord ventral horn" EXACT [] synonym: "ventral gray column of spinal cord" EXACT [FMA:256541] synonym: "ventral gray matter of spinal cord" EXACT [FMA:256541] synonym: "ventral grey column of spinal cord" EXACT [] synonym: "ventral grey horn" EXACT [BIRNLEX:2668] synonym: "ventral horn of the spinal cord" RELATED [BAMS:VH] synonym: "ventral horn spinal cord" EXACT [ZFA:0000702] synonym: "ventral horns spinal cord" RELATED OMO:0003004 [VHOG:0001288] synonym: "ventral region of spinal cord" EXACT [] synonym: "ventral spinal cord" EXACT [] xref: BAMS:VH xref: BIRNLEX:2668 xref: BTO:0005151 xref: EMAPA:18575 xref: EMAPA:35794 xref: FMA:256541 xref: MA:0001134 xref: NCIT:C33859 xref: neuronames:1751 xref: SCTID:279443000 xref: TAO:0000702 xref: UMLS:C0228569 {source="BIRNLEX:2668"} xref: UMLS:C0228590 {source="ncithesaurus:Ventral_Horn_of_the_Spinal_Cord"} xref: VHOG:0001288 xref: Wikipedia:Anterior_horn_of_spinal_cord xref: ZFA:0000702 is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0002315 ! gray matter of spinal cord property_value: UBPROP:0000001 "The anterior horn of the spinal cord (or anterior cornu, or anterior column, or ventral horn) is the ventral (front) grey matter section of the spinal cord. The anterior horn contains motor neurons that affect the axial muscles while the posterior horn receives information regarding touch and sensation. The anterior horn is where the cell bodies of alpha motorneurons are located[Wikipedia:Anterior_horn_of_spinal_cord]." xsd:string {source="Wikipedia:Anterior_horn_of_spinal_cord"} [Term] id: UBERON:0002258 name: dorsal funiculus of spinal cord namespace: uberon def: "The white substance of the spinal cord lying on either side between the posterior median sulcus and the dorsal root." [http://medical-dictionary.thefreedictionary.com/dorsal+funiculus] subset: uberon_slim subset: vertebrate_core synonym: "dorsal funiculus" EXACT [ZFA:0000501] synonym: "dorsal funiculus of spinal cord" EXACT [] synonym: "dorsal white column of spinal cord" EXACT [FMA:77461] synonym: "funiculus dorsalis" EXACT [ZFA:0000501] synonym: "funiculus posterior medullae spinalis" EXACT OMO:0003011 [FMA:77461, FMA:TA] synonym: "posterior funiculus" EXACT [] synonym: "posterior funiculus of spinal cord" EXACT [] synonym: "posterior white column of spinal cord" EXACT [FMA:77461] xref: FMA:77461 xref: neuronames:1692 xref: SCTID:362432005 xref: TAO:0000501 xref: Wikipedia:Dorsal_funiculus xref: ZFA:0000501 is_a: UBERON:0006127 ! funiculus of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg" xsd:anyURI property_value: IAO:0000116 "ZFA class is undefined. We currently do not place this as part of the DCML pathway as this would lead to taxon constraint violations." xsd:string [Term] id: UBERON:0002259 name: corpora quadrigemina namespace: uberon def: "Either of the two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina] subset: pheno_slim subset: uberon_slim synonym: "colliculi" EXACT [MP:0000899] synonym: "corpora quadrigemina" EXACT [] synonym: "quadrigeminal body" EXACT [] synonym: "set of colliculi" RELATED [FMA:242157] xref: BTO:0001710 xref: DHBA:12375 xref: EMAPA:36556 xref: EV:0100244 xref: FMA:242157 xref: GAID:574 xref: MA:0002567 xref: MESH:D003336 xref: NCIT:C12461 xref: neuronames:1279 xref: SCTID:361579006 xref: UMLS:C0010087 {source="ncithesaurus:Corpora_Quadrigemina"} xref: Wikipedia:Corpora_quadrigemina relationship: part_of UBERON:0002314 ! midbrain tectum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png" xsd:anyURI property_value: IAO:0000116 "this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates" xsd:string [Term] id: UBERON:0002260 name: ventral root of spinal cord namespace: uberon def: "The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion." [NLXANAT:20090209] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior nerve root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve] synonym: "anterior root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve] synonym: "anterior root of spinal nerve" RELATED [FMA:5979] synonym: "anterior spinal root" EXACT [BTO:0000865] synonym: "motor root of spinal nerve" RELATED [FMA:5979] synonym: "motor spinal root" RELATED [BTO:0000865] synonym: "radix anterior (nervus spinalis)" RELATED [FMA:5979] synonym: "radix anterior nervi spinalis" RELATED OMO:0003011 [Wikipedia:Anterior_root_of_spinal_nerve] synonym: "radix motoria (nervus spinalis)" RELATED [FMA:5979] synonym: "root motoria nervi spinalis" RELATED [BTO:0000865] synonym: "root ventralis nervi spinalis" RELATED [BTO:0000865] synonym: "spinal nerve ventral root" RELATED [] synonym: "ventral root" BROAD [NLXANAT:20090209] synonym: "ventral root of spinal nerve" RELATED [FMA:5979] synonym: "ventral roots" RELATED [BAMS:vrt] synonym: "ventral spinal nerve root" RELATED [FMA:5979] synonym: "ventral spinal root" EXACT [] xref: BAMS:vr xref: BAMS:vrt xref: BTO:0000865 xref: FMA:5979 xref: FMA:77516 xref: NCIT:C33860 xref: neuronames:2620 xref: NLXANAT:20090209 xref: TAO:0000705 xref: UMLS:C0205956 {source="ncithesaurus:Ventral_Nerve_Root"} xref: Wikipedia:Anterior_root_of_spinal_nerve xref: ZFA:0000705 is_a: UBERON:0009623 {different_relation_from="ZFA", source="FMA"} ! spinal nerve root property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve[Wikipedia:Anterior_root_of_spinal_nerve]." xsd:string {source="Wikipedia:Anterior_root_of_spinal_nerve"} property_value: UBPROP:0000012 "FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002261 name: dorsal root of spinal cord namespace: uberon def: "The dorsal roots contain afferent sensory axons. The dorsal roots of each side continue outwards, along the way forming a dorsal root ganglion (also called a spinal ganglion)." [NLXANAT:20090208] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "dorsal root" EXACT [ZFA:0000652] synonym: "dorsal root of spinal nerve" EXACT [FMA:5980] synonym: "dorsal roots" RELATED [BAMS:drt] synonym: "dorsal spinal nerve root" EXACT [FMA:5980] synonym: "dorsal spinal root" EXACT [] synonym: "posterior root of spinal nerve" EXACT [Wikipedia:Posterior_root_of_spinal_nerve] synonym: "radix dorsalis" EXACT [ZFA:0000652] synonym: "radix posterior" RELATED OMO:0003011 [Wikipedia:Posterior_root_of_spinal_nerve] synonym: "radix posterior (nervus spinalis)" EXACT [FMA:5980] synonym: "radix posterior nervi spinalis" RELATED [BTO:0000360] synonym: "radix sensoria (nervus spinalis)" EXACT [FMA:5980] synonym: "root dorsali nervi spinalis" RELATED [BTO:0000360] synonym: "root sensoria nervi spinalis" RELATED [BTO:0000360] synonym: "sensory root of spinal nerve" EXACT [FMA:5980] synonym: "sensory spinal root" RELATED [BTO:0000360] xref: BAMS:drt xref: BTO:0000360 xref: FMA:5980 xref: NCIT:C32477 xref: neuronames:1661 xref: NLXANAT:20090208 xref: SCTID:362436008 xref: TAO:0000652 xref: UMLS:C0205955 {source="ncithesaurus:Dorsal_Root_of_the_Spinal_Nerve"} xref: Wikipedia:Posterior_root_of_spinal_nerve xref: ZFA:0000652 is_a: UBERON:0009623 {source="FMA"} ! spinal nerve root property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: UBPROP:0000001 "In anatomy and neurology, the dorsal root (or posterior root) is the afferent sensory root of a spinal nerve. At the distal end of the dorsal root is the dorsal root ganglion, which contains the neuron cell bodies of the nerve fibres conveyed by the root. If the dorsal root of a spinal nerve were severed it would lead to numbness in certain areas of the body. The lateral division of the dorsal root contains lightly myelinated and unmyelinated axons of small diameter. These transmit pain and temperature sensation from the body. These fibers cross through the anterior white commissure to form the Anterior lateral system in the lateral funiculus. The medial division of the dorsal root contains myelinated axons of larger diameter. These transmit information of discriminative touch, pressure, vibration, and conscious proprioception originating from spinal levels C2 through S5. These fibers are pushed in towards the posterior medial sulcus to form the fasciculus gracilis and the fasciculus cuneatus. [WP,unvetted][Wikipedia:Posterior_root_of_spinal_nerve]." xsd:string {source="Wikipedia:Posterior_root_of_spinal_nerve"} [Term] id: UBERON:0002262 name: celiac ganglion namespace: uberon def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]." [Wikipedia:Celiac_ganglia] subset: human_reference_atlas subset: uberon_slim synonym: "coeliac ganglion" EXACT [FMA:77570] xref: BAMS:GCE xref: BTO:0006296 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0000266 xref: EHDAA:8946 xref: EMAPA:19321 xref: FMA:77570 xref: MA:0001158 xref: NCIT:C52830 xref: SCTID:362492008 xref: UMLS:C0007571 {source="ncithesaurus:Coeliac_Ganglion"} xref: Wikipedia:Celiac_ganglia is_a: UBERON:0003964 {source="MA"} ! prevertebral ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002263 name: lentiform nucleus namespace: uberon def: "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]." [Wikipedia:Lentiform_nucleus] subset: uberon_slim synonym: "lenticular nucleus" RELATED [BTO:0002250] synonym: "nucleus lenticularis" EXACT [BTO:0002250] synonym: "nucleus lentiformis" EXACT [BTO:0002250] synonym: "nucleus lentiformis" RELATED OMO:0003011 [Wikipedia:Lentiform_nucleus] xref: BTO:0002250 xref: EMAPA:18208 xref: EMAPA:19147 xref: EV:0100186 xref: FMA:77615 xref: MA:0000896 xref: NCIT:C32977 xref: neuronames:1234 xref: SCTID:279319002 xref: UMLS:C0162342 {source="ncithesaurus:Lenticular_Nucleus"} xref: Wikipedia:Lentiform_nucleus is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000369 {source="BTO", source="EMAPA"} ! corpus striatum relationship: part_of UBERON:0005403 {source="MA"} ! ventral striatum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png" xsd:anyURI property_value: IAO:0000116 "TODO - add parts" xsd:string property_value: UBPROP:0000012 "the EMAPA class is unclear" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0002264 name: olfactory bulb namespace: uberon def: "A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]." [BTO:0000961, Wikipedia:Olfactory_bulb] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "bulbus olfactorius" EXACT [Wikipedia:Olfactory_bulb] synonym: "bulbus olfactorius" RELATED OMO:0003011 [Wikipedia:Olfactory_bulb] synonym: "bulbus olfactorius (Morgagni)" RELATED OMO:0003011 [NeuroNames:279] synonym: "olfactory lobe" RELATED [ZFA:0000402] synonym: "olfactory lobe (Barr & Kiernan)" RELATED [NeuroNames:279] xref: AAO:0010165 xref: BAMS:DLB xref: BAMS:OB xref: BAMS:Olf xref: BIRNLEX:1137 xref: BM:Tel-OB xref: BTO:0000961 xref: CALOHA:TS-0702 xref: DHBA:10307 xref: EHDAA2:0004705 xref: EMAPA:32809 xref: EV:0100173 xref: FMA:77624 xref: GAID:633 xref: HBA:9303 xref: MA:0000194 xref: MESH:D009830 xref: NCIT:C28401 xref: neuronames:279 {source="BIRNLEX:1137"} xref: SCTID:279394006 xref: TAO:0000402 xref: UMLS:C0028936 {source="BIRNLEX:1137", source="ncithesaurus:Olfactory_Bulb"} xref: VHOG:0000033 xref: Wikipedia:Olfactory_bulb xref: XAO:0004180 xref: ZFA:0000402 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0005366 ! olfactory lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002171 UBERON:0001950 {source="ABA"} property_value: RO:0002171 UBERON:0002421 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Part of the rostral part of the cerebrum where axons of olfactory cells from the nasal mucosa terminate. Projects onto olfactory parts of pallium via olfactory tracts" xsd:string {source="ISBN:0471888893"} property_value: UBPROP:0000001 "Part of the telencephalon comprised of anterior outgrowths of either of the cerebral hemispheres in which the olfactory nerve exits.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010165", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract[FMA:77624]." xsd:string {source="FMA:77624"} property_value: UBPROP:0000001 "The part of the forebrain in which the olfactory nerves end and the olfactory tracts originate. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000033", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The presence of paired evaginated hemispheres and olfactory bulbs in both agnathan and gnathostome radiations suggests that such hemispheres were also present in the common ancestor.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000033", ontology="VHOG", source="DOI:10.1146/annurev.ne.04.030181.001505 Northcutt RG, Evolution of the telencephalon in nonmammals. Ann. Rev. Neurosci. (1981)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb" xsd:string {source="WP"} property_value: UBPROP:0000008 "Note that in uberon 'main olfactory bulb' is a separate class, but some ontologies may treat this as partially synonymous. The distinction may only make sense in tetrapods with a vomeronasal organ (olfactory nerves terminate in OB in fishes and in main OB in tetrapods - Butler and Hodos)" xsd:string property_value: UBPROP:0000011 "the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP)." xsd:string [Term] id: UBERON:0002265 name: olfactory tract namespace: uberon def: "White matter tract that contains projections from the olfactory bulb to other parts of the brain." [BIRNLEX:1663, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893, Wikipedia:Olfactory_tract] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "olfactory peduncle" RELATED [BTO:0003647] synonym: "olfactory stalk" RELATED [NeuroNames:283] synonym: "pedunclulus olfactorius" RELATED OMO:0003011 [NeuroNames:283] synonym: "tractus olfactorium" RELATED OMO:0003011 [NeuroNames:283] synonym: "tractus olfactorius" RELATED OMO:0003011 [BTO:0003647, Wikipedia:Olfactory_tract] xref: BAMS:olf xref: BIRNLEX:1663 xref: BTO:0003647 xref: DHBA:12073 xref: DHBA:12074 xref: EMAPA:35615 xref: FMA:77626 xref: HBA:9302 xref: MA:0000975 xref: NCIT:C33207 xref: neuronames:283 {source="BIRNLEX:1663"} xref: SCTID:362356008 xref: UMLS:C0162435 {source="ncithesaurus:Olfactory_Tract"} xref: Wikipedia:Olfactory_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0011299 ! white matter of telencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "A nervelike, white band composed primarily of nerve fibres originating from the mitral cells and tufted cells of the olfactory bulb but also containing the scattered cells of the anterior olfactory nucleus[BTO:0003647]." xsd:string {source="BTO:0003647"} property_value: UBPROP:0000001 "The olfactory tract is a bundle of axons connecting the mitral and tufted cells of the olfactory bulb to several target regions in the brain, including piriform cortex, amygdala, and entorhinal cortex. It is a narrow white band, triangular on coronal section, the apex being directed upward. It lies in the olfactory sulcus on the inferior surface of the frontal lobe, and divides posteriorly into two striæ, a medial olfactory stria and a lateral olfactory stria.[Wikipedia]." xsd:string {source="Wikipedia:Olfactory_tract"} property_value: UBPROP:0000001 "Tract of brain which is continuous with olfactory bulb and the cerebral cortex.[FMA]" xsd:string {source="FMA"} property_value: UBPROP:0000001 "White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone)" xsd:string {notes="deprecated class", source="BIRNLEX:1663"} property_value: UBPROP:0000008 "in animals with a long snout, the olfactory tract is long, whereas it is short in short-snouted animals such as primates. In some birds the tract per se does not exist as the bulb is connected directly to the cerebral hemisphere.[ISBN:0471888893]" xsd:string property_value: UBPROP:0000012 "The definition was adapted from the NIFSTD class which has been retired. It has been generalized so it is applicable to various different kinds of olfactory tracts found in different taxa." xsd:string {editor="cjm", source="ISBN:0471888893"} [Term] id: UBERON:0002266 name: anterior olfactory nucleus namespace: uberon def: "Laminated structure lying caudal to the olfactory bulb." [BIRNLEX:1085] subset: uberon_slim synonym: "anterior olfactory cortex" RELATED [BTO:0003649] synonym: "AON" RELATED [BTO:0003649] synonym: "area retrobulbaris" RELATED OMO:0003011 [NeuroNames:280] synonym: "nucleus olfactorius anterior" RELATED OMO:0003011 [Wikipedia:Anterior_olfactory_nucleus] synonym: "nucleus retrobulbaris [a8]" EXACT OMO:0003011 [FMA:77628, FMA:TA] synonym: "regio retrobulbaris" RELATED OMO:0003011 [NeuroNames:280] synonym: "retrobulbar nucleus [a8]" EXACT [] synonym: "retrobulbar region" RELATED [NeuroNames:280] xref: BAMS:AO xref: BAMS:AON xref: BIRNLEX:1085 xref: BM:Tel-OAN xref: BTO:0003649 xref: DHBA:10308 xref: EMAPA:35131 xref: EV:0100174 xref: FMA:77628 xref: HBA:4324 xref: MA:0000968 xref: MBA:159 xref: NCIT:C52710 xref: neuronames:280 {source="BIRNLEX:1085"} xref: UMLS:C0175225 {source="BIRNLEX:1085", source="ncithesaurus:Anterior_Olfactory_Nucleus"} xref: Wikipedia:Anterior_olfactory_nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002894 ! olfactory cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002171 UBERON:0002590 {source="ABA"} property_value: RO:0002171 UBERON:0002893 {source="ABA"} property_value: RO:0002171 UBERON:0004069 {source="ABA"} [Term] id: UBERON:0002267 name: laterodorsal tegmental nucleus namespace: uberon def: "The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]." [Wikipedia:Laterodorsal_tegmental_nucleus] subset: uberon_slim synonym: "anterodorsal tegmental nucleus" RELATED [BAMS:LDT] synonym: "lateroposterior tegmental nucleus" EXACT [] synonym: "nucleus tegmentalis posterolateralis" EXACT OMO:0003011 [FMA:77654, FMA:TA] synonym: "nucleus tegmentalis posterolateralis" RELATED OMO:0003011 [Wikipedia:Laterodorsal_tegmental_nucleus] xref: BAMS:LDT xref: BAMS:LDTg xref: BTO:0004016 xref: DHBA:12519 xref: DMBA:16964 xref: EMAPA:35490 xref: FMA:77654 xref: MA:0001016 xref: MBA:162 xref: neuronames:1256 xref: Wikipedia:Laterodorsal_tegmental_nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0002298 ! brainstem property_value: RO:0002171 UBERON:0002047 {source="ABA"} property_value: RO:0002171 UBERON:0002148 {source="ABA"} property_value: RO:0002171 UBERON:0002587 {source="ABA"} property_value: RO:0002171 UBERON:0003004 {source="ABA"} [Term] id: UBERON:0002270 name: hyaloid artery namespace: uberon def: "An artery that is part of the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens." [Wikipedia:Hyaloid_artery] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria hyaloidea" EXACT OMO:0003011 [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "hyaloid arteries" RELATED OMO:0003004 [ZFA:0005045] xref: EHDAA2:0004072 xref: EMAPA:19242 xref: FMA:77670 xref: SCTID:308790003 xref: TAO:0005045 xref: VHOG:0001478 xref: Wikipedia:Hyaloid_artery xref: XAO:0004155 xref: ZFA:0005045 is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:0003098 {source="Wikipedia"} ! optic stalk property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Artery that is internal to the eye. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005045", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "In humans, Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla" xsd:string [Term] id: UBERON:0002271 name: periventricular zone of hypothalamus namespace: uberon synonym: "hypothalamus periventricular zone" EXACT [] synonym: "periventricular zone of the hypothalamus" RELATED [BAMS:PVZ] synonym: "zona periventricularis hypothalamicae" EXACT OMO:0003011 [FMA:77682, FMA:TA] xref: BAMS:PVZ xref: EMAPA:35421 xref: FMA:77682 xref: MA:0000846 xref: MBA:157 xref: neuronames:2292 xref: VHOG:0000623 relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002272 name: medial zone of hypothalamus namespace: uberon synonym: "hypothalamic medial zone behavioral control column" RELATED [BAMS:MEZ] synonym: "hypothalamus medial zone" EXACT [] synonym: "medial zone of the hypothalamus" RELATED [BAMS:MEZ, BAMS:MZ] synonym: "zona medialis hypothalamicae" EXACT OMO:0003011 [FMA:77683, FMA:TA] xref: BAMS:MEZ xref: BAMS:MZ xref: EMAPA:35419 xref: FMA:77683 xref: MA:0000837 xref: MBA:467 xref: neuronames:2291 relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002273 name: lateral zone of hypothalamus namespace: uberon synonym: "hypothalamic lateral zone" RELATED [BAMS:LZ] synonym: "hypothalamus lateral zone" EXACT [] synonym: "lateral zone of the hypothalamus" RELATED [BAMS:LZ] synonym: "zona lateralis hypothalamicae" EXACT OMO:0003011 [FMA:77684, FMA:TA] xref: BAMS:LZ xref: EMAPA:35418 xref: FMA:77684 xref: MA:0000833 xref: MBA:290 xref: neuronames:2290 relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002274 name: perifornical nucleus namespace: uberon xref: BAMS:PeF xref: DHBA:11578 xref: EMAPA:37716 {source="MA:th"} xref: FMA:77688 xref: HBA:12917 xref: MA:0000836 xref: neuronames:2263 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus [Term] id: UBERON:0002275 name: reticular formation namespace: uberon def: "A composite substructure of the brainstem that consists of the midbrain reticular formation, the pontine reticular formation and the medullary reticular formation ( Carpenter-1983 )." [NeuroNames:1223] subset: uberon_slim synonym: "brain stem reticular formation" EXACT [NeuroNames:1223] synonym: "brainstem reticular formation" EXACT [MA:0003185, NeuroNames:1223] synonym: "reticular formation (classical)" EXACT [NeuroNames:1223] synonym: "reticular formation of the brainstem" EXACT [NeuroNames:1223] xref: BAMS:RET xref: EMAPA:35188 xref: FMA:77719 xref: MA:0003185 xref: MESH:D012154 xref: neuronames:1223 xref: NLX:143558 xref: SCTID:361552007 xref: Wikipedia:Reticular_formation is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002298 ! brainstem property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png" xsd:anyURI property_value: IAO:0000232 "this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation." xsd:string property_value: UBPROP:0000008 "It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain." xsd:string property_value: UBPROP:0000012 "FMA has a spinal cord reticular formation but we follow NNs (classical) to restrict this to brainstem structures. This means we also include the MA class for brainstem reticular formation here. FMA has subtypes of reticular formation but we treat this as a composite structure" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002280 name: otolith namespace: uberon def: "Acellular structure composed of calcium carbonate located in the otolith organ." [Wikipedia:Otolith, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "immature otolith" RELATED [] synonym: "immature otoliths" RELATED [] synonym: "otoconia" RELATED OMO:0003004 [] synonym: "otoconial crystal" RELATED [MP:0002894] synonym: "otoconium" EXACT [] synonym: "otoliths" EXACT OMO:0003004 [] synonym: "statoconia" RELATED OMO:0003004 [] synonym: "statoconium" EXACT [] synonym: "statolith" RELATED [] xref: ANISEED:777311 xref: ANISEED:874485 xref: EMAPA:37924 {source="MA:th"} xref: FMA:77826 xref: NCIT:C33230 xref: SCTID:368951003 xref: TAO:0001621 xref: UMLS:C0029894 {source="ncithesaurus:Otolith"} xref: Wikipedia:Otolith xref: ZFA:0001617 relationship: part_of UBERON:0002519 {source="MP", source="Wikipedia"} ! otolithic part of statoconial membrane property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg" xsd:anyURI property_value: IAO:0000116 "Currently represented as part of the otolith membrane, but they may also be considered to be embedded in this membrane" xsd:string property_value: UBPROP:0000001 "Portion of organism substance composed of calcium carbonate located in the otolith organ.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001621", ontology="TAO", source="TAO:wd"} property_value: UBPROP:0000002 "relationship loss: develops_from immature otolith (TAO:0000139)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001621", ontology="TAO"} property_value: UBPROP:0000007 "otoconial" xsd:string property_value: UBPROP:0000007 "otolithic" xsd:string property_value: UBPROP:0000008 "Mammals have many tiny otoconia and fish have three large otoliths[ZFIN:df]" xsd:string [Term] id: UBERON:0002285 name: telencephalic ventricle namespace: uberon def: "A brain ventricle that is part of a telencephalon. In mammals and species with an evaginated telencephalon, this is one of a pair of lateral structures, one in each hemisphere." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Lateral_ventricle] comment: modeled as space in EHDAA2 subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "forebrain ventricle" RELATED [] synonym: "lateral ventricle" EXACT HUMAN_PREFERRED [MA:0000192] synonym: "lateral ventricle of brain" RELATED [BTO:0000879] synonym: "lateral ventricles" EXACT OMO:0003004 [] synonym: "tectal ventricle" RELATED [] synonym: "telencephalic ventricle" EXACT [VHOG:0000643, ZFA:0000696] synonym: "telencephalic ventricles" RELATED [BAMS:Tel-V] synonym: "telencephalic vesicle" RELATED [ZFA:0000696] synonym: "telencephalon lateral ventricle" EXACT [EHDAA2:0001984] xref: BAMS:LV xref: BAMS:Tel-V xref: BIRNLEX:1263 xref: BM:Tel-LV xref: BTO:0000879 xref: CALOHA:TS-1230 xref: DHBA:10596 xref: DMBA:126651562 xref: EFO:0001961 xref: EHDAA2:0001984 xref: EHDAA:3502 xref: EHDAA:6576 xref: EV:0100307 xref: FMA:78448 xref: GAID:611 xref: HBA:9419 xref: MA:0000192 xref: MBA:81 xref: MESH:D020547 xref: NCIT:C12834 xref: neuronames:209 xref: SCTID:180930008 xref: TAO:0000696 xref: UMLS:C0152279 {source="ncithesaurus:Lateral_Ventricle", source="BIRNLEX:1263"} xref: VHOG:0000643 xref: Wikipedia:Lateral_ventricle xref: ZFA:0000696 is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001893 ! telencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The lateral ventricles are part of the ventricular system of the brain. Classified as part of the telencephalon, they are the largest of the ventricles. The lateral ventricles connect to the central third ventricle through the interventricular foramina of Monro[WP]." xsd:string {source="Wikipedia:Lateral_ventricle"} property_value: UBPROP:0000001 "The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]." xsd:string {source="GO:0021670"} property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000643", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002286 name: third ventricle namespace: uberon def: "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone)." [BIRNLEX:714] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "3rd ventricle" EXACT [] synonym: "diencephalic ventricle" RELATED [] synonym: "diencephalic vesicle" NARROW [] synonym: "ventriculus diencephali" EXACT [ZFA:0000161] synonym: "ventriculus tertius cerebri" RELATED OMO:0003011 [Wikipedia:Third_ventricle] xref: BAMS:3V xref: BAMS:V3 xref: BIRNLEX:714 xref: BM:Die-3V xref: CALOHA:TS-2058 xref: DHBA:10602 xref: EHDAA2:0000084 xref: EMAPA:16900 xref: EV:0100308 xref: FMA:78454 xref: GAID:614 xref: HBA:9420 xref: MA:0000182 xref: MBA:129 xref: MESH:D020542 xref: NCIT:C12827 xref: neuronames:446 xref: SCTID:180931007 xref: TAO:0000161 xref: UMLS:C0149555 {source="ncithesaurus:Third_Ventricle_of_Brain", source="BIRNLEX:714"} xref: VHOG:0000007 xref: Wikipedia:Third_ventricle xref: ZFA:0000161 is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001894 ! diencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png" xsd:anyURI property_value: IAO:0000116 "consider adding class for secondary vesicle precursor" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000161", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from forebrain ventricle (TAO:0001259)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000161", ontology="TAO"} property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000007", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002287 name: optic recess of third ventricle namespace: uberon def: "Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis." [NLX:144280] subset: uberon_slim subset: vertebrate_core synonym: "optic recess" EXACT [] synonym: "optic recesses" RELATED [VHOG:0000595] synonym: "preoptic recess" EXACT [] synonym: "preoptic recess" RELATED [] synonym: "recessus opticus" RELATED [] synonym: "recessus praeopticus" RELATED [] synonym: "recessus supraopticus" EXACT OMO:0003011 [FMA:78455, FMA:TA] synonym: "recessus supraopticus" RELATED OMO:0003011 [Wikipedia:Optic_recess] synonym: "supraoptic recess" EXACT [] synonym: "supraoptic recess" RELATED [] xref: BAMS:ORe xref: EHDAA2:0001317 xref: EHDAA:1343 xref: EHDAA:1973 xref: EHDAA:2649 xref: EHDAA:3478 xref: EMAPA:16902 xref: FMA:78455 xref: neuronames:457 xref: NLX:144280 xref: SCTID:369279008 xref: TAO:0000049 xref: VHOG:0000595 xref: Wikipedia:Optic_recess xref: ZFA:0000049 relationship: part_of UBERON:0002286 ! third ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray721.png" xsd:anyURI property_value: IAO:0000116 "TODO - check taxonomic grouping" xsd:string property_value: UBPROP:0000001 "At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted][Wikipedia:Optic_recess]." xsd:string {source="Wikipedia:Optic_recess"} property_value: UBPROP:0000001 "The optic recess of the third ventricle, i.e. the pouch of the ventricle penetrating into the interval between the initial optic tracts. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000595", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002288 name: choroid plexus of third ventricle namespace: uberon def: "Part of choroid plexus contained in the third ventricle." [NLX:18606] subset: vertebrate_core synonym: "3rd ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of third ventricle" EXACT [] synonym: "choroid plexus third ventricle" EXACT [ZFA:0001444] synonym: "diencephalic choroid plexus" EXACT [ZFA:0001444] synonym: "third ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle choroid plexus" EXACT [] xref: BAMS:chp3 xref: BAMS:cp3v xref: EMAPA:18543 xref: FMA:78462 xref: HBA:9709 xref: MA:0000879 xref: NCIT:C49782 xref: neuronames:452 xref: NLX:18606 xref: SCTID:61576002 xref: TAO:0001444 xref: UMLS:C0152291 {source="ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle"} xref: VHOG:0001374 xref: ZFA:0001444 is_a: UBERON:0001886 ! choroid plexus relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0002289 name: midbrain cerebral aqueduct namespace: uberon alt_id: UBERON:0005684 def: "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone)." [BIRNLEX:1261] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "aqueduct" RELATED [BAMS:AQ] synonym: "aqueduct (Sylvius)" EXACT [] synonym: "aqueduct of midbrain" EXACT [] synonym: "aqueduct of Sylvius" EXACT [] synonym: "aqueduct of Sylvius" RELATED [BAMS:AQ] synonym: "aqueductus mesencephali" EXACT OMO:0003011 [FMA:78467, FMA:TA] synonym: "aqueductus mesencephali" RELATED OMO:0003011 [Wikipedia:Cerebral_aqueduct] synonym: "cerebral aquaduct" EXACT [ZFA:0000159] synonym: "cerebral aqueduct" EXACT [MA:0000208] synonym: "cerebral aqueduct of Sylvius" EXACT [] synonym: "cerebral aqueduct proper" RELATED [BAMS:AQ] synonym: "medial tectal ventricle" EXACT NON_AMNIOTE [ZFA:0000159] synonym: "mesencephalic duct" EXACT [Wikipedia:Cerebral_aqueduct] synonym: "mesencephalic ventricle" EXACT NON_AMNIOTE [ZFA:0000159] synonym: "mesencephalic vesicle" RELATED NON_AMNIOTE [ZFA:0000159] synonym: "midbrain cerebral aqueduct" EXACT [EHDAA2:0001163] synonym: "midbrain ventricle" EXACT NON_AMNIOTE [ZFA:0000159] synonym: "Sylvian aqueduct" EXACT [Wikipedia:Cerebral_aqueduct] synonym: "tectal ventricle" EXACT NON_AMNIOTE [ZFA:0000159] xref: BAMS:AQ xref: BAMS:Aq xref: BIRNLEX:1261 xref: BM:MB-AQ xref: DHBA:10651 xref: DHBA:12369 xref: DMBA:126651722 xref: EFO:0003501 xref: EHDAA2:0001163 xref: EHDAA:3696 xref: EMAPA:17795 xref: EV:0100309 xref: FMA:78467 xref: GAID:583 xref: HBA:265505702 xref: MA:0000208 xref: MBA:140 xref: MESH:D002535 xref: NCIT:C32135 xref: ncithesaurus:Cerebral_Aqueduct xref: neuronames:509 xref: SCTID:279249003 xref: TAO:0000159 xref: UMLS:C0007769 {source="ncithesaurus:Aqueduct_of_Sylvius", source="BIRNLEX:1261"} xref: VHOG:0000832 xref: Wikipedia:Cerebral_aqueduct xref: ZFA:0000159 is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001891 ! midbrain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000832", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "Two distinct classes in ncit. We classify this as a brain ventricle even though it is not classifically regarded as one (3rd = diencephalon, 4th = hindbrains)" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0002290 name: choroid plexus of fourth ventricle namespace: uberon def: "Choroid plexus of the fourth ventricle." [NLX:27388] subset: vertebrate_core synonym: "4th ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of fourth ventricle" EXACT [] synonym: "choroid plexus fourth ventricle" EXACT [ZFA:0001446] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle choroid plexus" EXACT [] xref: BAMS:chp4 xref: BAMS:cp4v xref: DHBA:12808 xref: EMAPA:32742 xref: FMA:78492 xref: HBA:9710 xref: MA:0000983 xref: NCIT:C32308 xref: neuronames:638 xref: NLX:27388 xref: SCTID:42214001 xref: TAO:0001446 xref: UMLS:C0152293 {source="ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle"} xref: VHOG:0001375 xref: ZFA:0001446 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0006694 ! cerebellum vasculature relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0002291 name: central canal of spinal cord namespace: uberon alt_id: UBERON:0002220 def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [PMID:23409159, ZFIN:curator] comment: previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "canalis centralis" EXACT [ZFA:0000938] synonym: "central canal" EXACT [ZFA:0000938] synonym: "central canal of spinal cord" EXACT [] synonym: "central canal, spinal cord/medulla" RELATED [BAMS:C] synonym: "spinal cord central canal" EXACT [] synonym: "ventricle of spinal cord" EXACT [FMA:78497] xref: BAMS:C xref: BAMS:CC xref: BIRNLEX:1409 xref: DHBA:146035108 xref: DMBA:126652042 xref: EHDAA2:0004361 xref: EMAPA:35789 xref: FMA:78497 xref: HBA:9422 xref: MA:0001117 xref: MBA:164 xref: NCIT:C12891 xref: neuronames:1733 xref: SCTID:279447004 xref: TAO:0000938 xref: UMLS:C0459414 {source="ncithesaurus:Central_Canal"} xref: Wikipedia:Central_canal_of_spinal_cord xref: ZFA:0000938 relationship: part_of UBERON:0002240 {source="MA"} ! spinal cord relationship: part_of UBERON:0005281 {source="FMA"} ! ventricular system of central nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002298 name: brainstem namespace: uberon def: "Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]." [ISBN:0471888893, MP:0005277, Wikipedia:Brainstem, ZFA:0001707] comment: 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "accessory medullary lamina of pallidum" RELATED [NeuroNames:236] synonym: "brain stem" EXACT [ABA:BS] synonym: "lamella pallidi incompleta" RELATED OMO:0003011 [NeuroNames:236] synonym: "lamina medullaris accessoria" RELATED OMO:0003011 [NeuroNames:236] synonym: "lamina medullaris incompleta pallidi" RELATED OMO:0003011 [NeuroNames:236] synonym: "lamina pallidi incompleta" RELATED OMO:0003011 [NeuroNames:236] synonym: "truncus encephali" EXACT OMO:0003011 [Wikipedia:Brainstem] synonym: "truncus encephalicus" RELATED OMO:0003011 [BTO:0000146] xref: BAMS:BS xref: BIRNLEX:1565 xref: BTO:0000146 xref: CALOHA:TS-0093 xref: EFO:0001962 xref: EMAPA:32678 xref: EV:0100241 xref: FMA:79876 xref: MA:0000169 xref: MBA:343 xref: MESH:D001933 xref: NCIT:C12441 xref: neuronames:236 {source="BIRNLEX:1565"} xref: SCTID:180925009 xref: TAO:0002156 xref: UMLS:C0006121 {source="BIRNLEX:1565", source="ncithesaurus:Brain_Stem"} xref: VHOG:0001457 xref: Wikipedia:Brainstem xref: ZFA:0001707 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png" xsd:anyURI property_value: RO:0002171 UBERON:0001890 {notes="we apply a strict definition"} property_value: RO:0002171 UBERON:0002037 {exceptions="ZFA", source="ABA", source="https://github.com/obophenotype/uberon/issues/378", status="pending"} property_value: RO:0002171 UBERON:0002314 {notes="we apply a strict definition"} property_value: UBPROP:0000001 "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002156", ontology="TAO", source="ISBN:3764351209"} property_value: UBPROP:0000001 "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted][ZFA:0001707]." xsd:string {source="ZFA:0001707"} property_value: UBPROP:0000001 "the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord[MP]" xsd:string {source="MP:0005277"} [Term] id: UBERON:0002301 name: layer of neocortex namespace: uberon def: "One of the layers of the neocortex. These layers are defined by distinctive populations of cells based on somata size, shape, or density, that are aligned into sheets." [http://orcid.org/0000-0002-6601-2165, ISBN-10:0-87893-742-0, PMID:29081739] synonym: "cerebral cortex layer" RELATED [MA:0000186] synonym: "cortical layer" BROAD [] synonym: "lamina of neocortex" RELATED [FMA:83138] synonym: "layer of neocortex" EXACT [FMA:83138] synonym: "neocortex layer" EXACT [MA:0000186] xref: ABA:CTX1-6b xref: EMAPA:35588 xref: FMA:83138 xref: MA:0000186 is_a: UBERON:0022303 ! nervous system cell part layer is_a: UBERON:8440004 ! laminar subdivision of the cortex relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002304 name: layer of dentate gyrus namespace: uberon def: "One of the three layers of the dentate gyrus of the hippocampal formation." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885] synonym: "dentate gyrus cell layer" EXACT [] synonym: "dentate gyrus layer" EXACT [] xref: EMAPA:35278 xref: FMA:83678 xref: MA:0002429 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation property_value: UBPROP:0000008 "the basic trilaminar structure of the dentate gyrus is common across all species studied, with relatively minimal phylogenetic variation[PMC2492885]" xsd:string [Term] id: UBERON:0002305 name: layer of hippocampus namespace: uberon def: "The layers of the laminar structure of the hippocampus." [MP:0000813, Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers] comment: EDITOR_NOTE TODO - check NIF xref subset: pheno_slim synonym: "cytoarchitectural fields of hippocampal formation" EXACT [BIRNLEX:1192] synonym: "hippocampus layer" EXACT [] synonym: "hippocampus proper layer" RELATED [FMA:83679] synonym: "layer of cornu ammonis" RELATED [FMA:83679] xref: BIRNLEX:1192 xref: EMAPA:35407 xref: FMA:277842 xref: FMA:83679 xref: MA:0002427 xref: Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 ! central nervous system gray matter layer relationship: part_of UBERON:0002421 ! hippocampal formation [Term] id: UBERON:0002307 name: choroid plexus of lateral ventricle namespace: uberon def: "Part of choroid plexus contained in the lateral ventricle." [NLX:32548] subset: vertebrate_core synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of lateral ventricle" EXACT [] synonym: "choroid plexus telencephalic ventricle" EXACT [ZFA:0001447] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle choroid plexus" EXACT [] xref: BAMS:cplv xref: DHBA:10601 xref: EHDAA2:0004449 xref: EMAPA:17769 xref: FMA:83711 xref: HBA:9708 xref: MA:0000961 xref: NCIT:C32309 xref: neuronames:218 xref: NLX:32548 xref: SCTID:70064002 xref: TAO:0001447 xref: UMLS:C0152289 {source="ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle"} xref: VHOG:0001376 xref: ZFA:0001447 is_a: UBERON:0001886 ! choroid plexus relationship: part_of UBERON:0002285 ! telencephalic ventricle [Term] id: UBERON:0002308 name: nucleus of brain namespace: uberon def: "A neural nucleus that is part of the brain." [http://orcid.org/0000-0002-6601-2165] synonym: "brain nuclei" RELATED OMO:0003004 [ZFA:0005575] synonym: "brain nucleus" EXACT [] xref: EMAPA:35185 xref: FMA:83840 xref: MA:0000811 xref: NCIT:C49346 xref: SCTID:426465002 xref: UMLS:C1706993 {source="ncithesaurus:Brain_Nucleus"} xref: ZFA:0005575 is_a: UBERON:0000125 ! neural nucleus relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0003528 ! brain gray matter [Term] id: UBERON:0002309 name: medial longitudinal fasciculus namespace: uberon def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fasciculus] subset: uberon_slim subset: vertebrate_core synonym: "fasciculus longitudinalis medialis" RELATED OMO:0003011 [Wikipedia:Medial_longitudinal_fasciculus] synonym: "medial longitudinal fascicle" RELATED [BAMS:mlf] synonym: "MLF" RELATED [ZFA:0000543] xref: BAMS:mlf xref: BTO:0003951 xref: DHBA:12764 xref: FMA:83846 xref: HBA:9351 xref: MBA:62 xref: neuronames:1588 xref: SCTID:362397001 xref: TAO:0000543 xref: Wikipedia:Medial_longitudinal_fasciculus xref: ZFA:0000543 is_a: UBERON:0005838 ! fasciculus of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png" xsd:anyURI property_value: UBPROP:0000001 "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata. The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord. Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure[ZFA]." xsd:string {source="ZFA:0000543, ZFIN:ZDB-PUB-961014-1280"} [Term] id: UBERON:0002310 name: hippocampus fimbria namespace: uberon def: "Regional part of fornix consisting of a prominent white matter structure adjacent to the hippocampus on the ventricular side continuous with the alveus. Near the splenium the fimbria separates from the hippocampus as the crus of the fornix. [adapted from Wikipedia] (MM: 2006-10-26)." [BIRNLEX:1502] subset: pheno_slim synonym: "fimbria" BROAD [BIRNLEX:1502] synonym: "fimbria (Vieussens)" RELATED [NeuroNames:187] synonym: "fimbria fornicis" RELATED OMO:0003011 [NeuroNames:187] synonym: "fimbria hippocampi" RELATED OMO:0003011 [NeuroNames:187, Wikipedia:Fimbria_of_hippocampus] synonym: "fimbria hippocampus" EXACT [] synonym: "fimbria of fornix" RELATED [NeuroNames:187] synonym: "fimbria of hippocampus" EXACT [FMA:83866] synonym: "fimbria of the fornix" EXACT [BIRNLEX:1502] synonym: "fimbria of the hippocampus" RELATED [NeuroNames:187] synonym: "fimbria-fornix" EXACT [BIRNLEX:1502] synonym: "hippocampal fimbria" EXACT [MP:0009324] synonym: "neuraxis fimbria" EXACT [] xref: BAMS:FI xref: BAMS:fi xref: BIRNLEX:1502 xref: BM:Tel-FI xref: DHBA:10575 xref: DMBA:17766 xref: EMAPA:35345 xref: FMA:83866 xref: HBA:9253 xref: MA:0000949 xref: MBA:603 xref: NCIT:C32606 xref: neuronames:187 {source="BIRNLEX:1502"} xref: SCTID:369096000 xref: UMLS:C0152315 {source="BIRNLEX:1502", source="ncithesaurus:Fimbria"} xref: Wikipedia:Fimbria_of_hippocampus is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000052 {notes="Need to determine whether the fimbria is part of the fornix. Sometimes the language suggests it isn't always thought of that way, but I see no useful reason why it should be separate; it all forms one continuous white matter tract. Neuronames and others include this as part of the hippocampal formation (MM)", source="NIFSTD"} ! fornix of brain relationship: part_of UBERON:0001954 {source="MA", source="NIFSTD"} ! Ammon's horn relationship: part_of UBERON:0011299 ! white matter of telencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png" xsd:anyURI [Term] id: UBERON:0002313 name: hippocampus pyramidal layer namespace: uberon alt_id: UBERON:0005369 def: "A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames)." [BIRNLEX:1444] comment: EDITOR_NOTE this layer changes in its depthwise spatial relation across its extent subset: pheno_slim synonym: "gyrus occipitalis inferior" RELATED OMO:0003011 [NeuroNames:156] synonym: "gyrus occipitalis tertius" RELATED OMO:0003011 [NeuroNames:156] synonym: "hippocampal pyramidal cell layer" RELATED [] synonym: "hippocampal pyramidal layer" RELATED [] synonym: "hippocampus pyramidal cell layer" RELATED [] synonym: "hippocampus stratum pyramidale" RELATED [] synonym: "pyramidal cell layer of the hippocampus" EXACT [BIRNLEX:1444] synonym: "pyramidal layer of hippocampus" EXACT [FMA:83895] synonym: "stratum pyramidale" EXACT [BIRNLEX:1444] synonym: "stratum pyramidale hippocampi" EXACT [BIRNLEX:1444] xref: BAMS:Py xref: BIRNLEX:1444 xref: BTO:0001066 xref: EMAPA:35409 xref: FMA:83895 xref: MA:0000956 xref: neuronames:156 {source="BIRNLEX:1444"} is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0002314 name: midbrain tectum namespace: uberon def: "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM)." [BIRNLEX:1032] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "mesencephalic tectum" EXACT [ZFA:0000445] synonym: "neuraxis tectum" EXACT [] synonym: "t. mesencephali" RELATED OMO:0003011 [Wikipedia:Midbrain_tectum] synonym: "tectum" EXACT [] synonym: "tectum mesencephali" EXACT [BTO:0001793] synonym: "tectum mesencephalicum" RELATED OMO:0003011 [NeuroNames:465] synonym: "tectum of midbrain" RELATED [NeuroNames:465] xref: BAMS:MTec xref: BAMS:Tec xref: BIRNLEX:1032 xref: BM:MB-Tec xref: BTO:0001793 xref: DHBA:12291 xref: EFO:0000920 xref: EHDAA2:0004474 xref: EMAPA:19051 xref: FMA:83902 xref: HBA:9101 xref: MA:0000211 xref: MAT:0000451 xref: NCIT:C12460 xref: neuronames:465 {source="BIRNLEX:1032"} xref: SCTID:362394008 xref: TAO:0001353 xref: UMLS:C0039433 {source="ncithesaurus:Tectum_Mesencephali", source="BIRNLEX:1032"} xref: VHOG:0001388 xref: Wikipedia:Midbrain_tectum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001891 ! midbrain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png" xsd:anyURI property_value: UBPROP:0000003 "The tectum - a multisensory, topologically mapped structure in the roof of the midbrain presents a remarkable degree of conservation in all vertebrate radiations; although it varies in the extent of its development in different vertebrate classes, there is considerable evidence now to deem its layered structure, its cell types, and its hodological pattern as homologous in all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001388", ontology="VHOG", source="DOI:10.1371/journal.pone.0003582 Maximino C, Evolutionary Changes in the Complexity of the Tectum of Nontetrapods: A Cladistic Approach. PLoS ONE (2008)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi" xsd:string {source="WP"} [Term] id: UBERON:0002315 name: gray matter of spinal cord namespace: uberon def: "The ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503] subset: pheno_slim synonym: "gray matter of spinal cord" EXACT [OBOL:automatic] synonym: "gray substance of spinal cord" EXACT [FMA:256580] synonym: "grey matter of spinal cord" EXACT [] synonym: "grey substance of spinal cord" EXACT [] synonym: "spinal cord gray matter" EXACT [OBOL:automatic] synonym: "spinal cord grey matter" EXACT [] synonym: "spinal cord grey substance" EXACT [OBOL:automatic] synonym: "substantia grisea medullae spinalis" EXACT OMO:0003011 [FMA:256580, FMA:TA] xref: BAMS:Scgrey xref: DHBA:146035048 xref: EMAPA:35792 xref: FMA:256580 xref: MA:0000002 xref: NCIT:C32696 xref: neuronames:2619 xref: NLXANAT:100204 xref: SCTID:279441003 xref: UMLS:C0475853 {source="ncithesaurus:Gray_Matter_of_the_Spinal_Cord"} is_a: UBERON:0002020 ! gray matter relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002316 name: white matter namespace: uberon def: "Neural tissue consisting of myelinated axons connecting grey matter areas of the central nervous system." [https://orcid.org/0000-0002-6601-2165, Wikipedia:White_matter] subset: uberon_slim subset: vertebrate_core synonym: "CNS tract/commissure" EXACT [ZFA:0001682] synonym: "CNS tracts and commissures" RELATED [TAO:0000145] synonym: "CNS white matter" RELATED [TAO:0002143] synonym: "neuronal white matter" EXACT [AEO:0001011] synonym: "substantia alba" RELATED OMO:0003011 [Wikipedia:White_matter] synonym: "white mater" RELATED [VHOG:0001764] synonym: "white matter of neuraxis" EXACT [FMA:83929] synonym: "white substance" EXACT [] xref: AEO:0000139 xref: AEO:0001011 xref: EMAPA:35927 xref: FMA:83929 xref: HBA:9218 xref: MA:0001135 xref: MESH:D066127 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33892 xref: neuronames:2870 xref: NLX:412 xref: NLXANAT:101177 xref: PBA:294022044 xref: TAO:0000145 xref: TAO:0002142 xref: TAO:0002143 xref: UMLS:C0682708 {source="ncithesaurus:White_Matter"} xref: VHOG:0001764 xref: Wikipedia:White_matter xref: ZFA:0001682 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001017 ! central nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Grey_matter_and_white_matter_-_very_high_mag.jpg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: UBPROP:0000001 "Cell part cluster consisting predominantly of neurites in the brain and the spinal cord[FMA:83929]." xsd:string {source="FMA:83929"} property_value: UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002142", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The myelination of axons by glial cells was the last major step in the evolution of cells in the vertebrate nervous system, and white-matter tracts are key to the architecture of the mammalian brain.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001764", ontology="VHOG", source="DOI:10.1038/nature09614 Nave KA, Myelination and support of axonal integrity by glia. Nature (2010)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "nlx_anat_101177 seems to have been lost in the transition from NIFGA to Neurolex" xsd:string {external_ontology="NIF", seeAlso="https://github.com/SciCrunch/NIF-Ontology/issues/83"} [Term] id: UBERON:0002317 name: white matter of cerebellum namespace: uberon def: "Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles." [BIRNLEX:1562] subset: pheno_slim subset: vertebrate_core synonym: "cerebellar tracts/commissures" RELATED OMO:0003004 [ZFA:0001708] synonym: "cerebellar white matter" EXACT [] synonym: "cerebellum white matter" EXACT [] synonym: "medullary substance of cerebellum" RELATED [NeuroNames:691] synonym: "substantia centralis medullaris cerebelli" RELATED OMO:0003011 [NeuroNames:691] synonym: "substantia medullaris cerebelli" RELATED OMO:0003011 [NeuroNames:691] xref: BAMS:CB-white xref: BAMS:cbw xref: BIRNLEX:1562 xref: DMBA:16926 xref: EMAPA:35235 xref: FMA:83943 xref: HBA:9288 xref: MA:0002430 xref: NCIT:C49217 xref: neuronames:691 {source="BIRNLEX:1562"} xref: SCTID:362412009 xref: TAO:0002183 xref: UMLS:C0152381 {source="ncithesaurus:Cerebellum_White_Matter", source="BIRNLEX:1562"} xref: ZFA:0001708 is_a: UBERON:0002316 ! white matter property_value: UBPROP:0000001 "CNS white matter that is part of the cerebellum.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002183", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000012 "in NIF this is a composite structure; in MA and FMA it is explicitly part of cerebellum. This leads to consistency problems with strict parcellation schemes like ABA, see cerebellar peduncles. In NIF this is a composite structure, this is followed partially here in weakening the relationship to overlaps" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0002318 name: white matter of spinal cord namespace: uberon def: "The regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008027] subset: pheno_slim synonym: "spinal cord white matter" EXACT [] synonym: "spinal cord white matter of neuraxis" EXACT [OBOL:automatic] synonym: "spinal cord white substance" EXACT [OBOL:automatic] synonym: "substantia alba medullae spinalis" EXACT OMO:0003011 [FMA:83945, FMA:TA] synonym: "white matter of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "white substance of spinal cord" EXACT [OBOL:automatic] xref: BAMS:SCwhite xref: DHBA:146035088 xref: EMAPA:35795 xref: FMA:83945 xref: MA:0000910 xref: NCIT:C33893 xref: SCTID:279436006 xref: UMLS:C0458457 {source="ncithesaurus:White_Matter_of_the_Spinal_Cord"} is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002322 name: periventricular nucleus namespace: uberon def: "A thin sheet of small neurons located in the wall of the third ventricle, a composite structure of the hypothalamus." [Wikipedia:Periventricular_nucleus] subset: uberon_slim subset: vertebrate_core synonym: "periventricular nuclei" RELATED OMO:0003004 [ZFA:0000260] synonym: "ventral zone of periventricular hypothalamus" EXACT [ZFA:0000260] xref: FMA:84354 xref: TAO:0000260 xref: Wikipedia:Periventricular_nucleus xref: ZFA:0000260 is_a: UBERON:0002308 ! nucleus of brain property_value: UBPROP:0000001 "Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." xsd:string {source="ZFA:0000260, GOC:MAH, ISBN:3764351209"} [Term] id: UBERON:0002327 name: trunk of intercostal nerve namespace: uberon synonym: "intercostal nerve trunk" EXACT [] synonym: "intercostal neural trunk" EXACT [] xref: EMAPA:37720 {source="MA:th"} xref: FMA:85315 xref: MA:0001176 is_a: UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0003727 ! intercostal nerve [Term] id: UBERON:0002336 name: corpus callosum namespace: uberon def: "White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM)." [BIRNLEX:1087] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim xref: BAMS:CC xref: BAMS:cc xref: BIRNLEX:1087 xref: BM:Tel-CC xref: BTO:0000615 xref: CALOHA:TS-0180 xref: DHBA:10561 xref: EFO:0001390 xref: EMAPA:35253 xref: EV:0100305 xref: FMA:86464 xref: GAID:683 xref: HBA:9222 xref: MA:0000188 xref: MAT:0000286 xref: MBA:776 xref: MESH:D003337 xref: MIAA:0000286 xref: NCIT:C12446 xref: neuronames:191 xref: SCTID:362354006 xref: UMLS:C0010090 {source="BIRNLEX:1087", source="ncithesaurus:Corpus_Callosum"} xref: VHOG:0001608 xref: Wikipedia:Corpus_callosum is_a: UBERON:0002473 {source="FMA-part_of", source="MA"} ! intercerebral commissure is_a: UBERON:0005340 {source="MP"} ! dorsal telencephalic commissure property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002161 NCBITaxon:9255 {source="Wikipedia"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The largest commissure of the brain connecting the cerebral hemispheres. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001608", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/corpus+callosum"} property_value: UBPROP:0000003 "In addition to the anterior commissure, placental mammals have a phylogenetically new forebrain commissure, the corpus callosum, which primarily interconnects the neocortex of the cerebral hemispheres.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001608", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20447.x Ebner FF, A comparison of primitive forebrain organization in metatherian and eutherian mammals. Annals of the New York Academy of Sciences (1969)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "The corpus callosum is found only in placental mammals. other groups do have other brain structures that allow for communication between the two hemispheres, such as the anterior commissure, which serves as the primary mode of interhemispheric communication in marsupials." xsd:string {source="Wikipedia:Corpus_callosum#Species_Differences"} [Term] id: UBERON:0002341 name: epithelium of segmental bronchus namespace: uberon def: "An epithelium that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic] synonym: "segmental bronchial epithelium" EXACT [] synonym: "segmental bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "segmental bronchus epithelium" EXACT [] synonym: "tertiary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "tertiary bronchus epithelium" EXACT [OBOL:automatic] xref: EMAPA:37740 {source="MA:th"} xref: FMA:86626 xref: MA:0001850 is_a: UBERON:0006934 ! sensory epithelium property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-6677-8489 property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002360 name: meninx namespace: uberon def: "Membrane organ that surrounds the brain and the spinal cord." [FMA:9589, http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "layer of meninges" EXACT [] synonym: "meningeal layer" EXACT [] synonym: "meninx primitiva" NARROW [VHOG:0001295] xref: BTO:0000144 xref: CALOHA:TS-1177 xref: EFO:0000867 xref: EMAPA:32660 xref: FMA:9589 xref: GAID:687 xref: MA:0001113 xref: MAT:0000113 xref: MESH:D008578 xref: NCIT:C12348 xref: NLXANAT:090204 xref: TAO:0001355 xref: UMLS:C0025285 {source="ncithesaurus:Meninges"} xref: VHOG:0001295 xref: Wikipedia:Meninx xref: ZFA:0001355 relationship: part_of UBERON:0010743 ! meningeal cluster property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/4/48/Illu_meninges.jpg" xsd:anyURI property_value: UBPROP:0000001 "Membrane covering the brain and spinal cord. It is represented by a single layer in fishes, two in amphibians, reptiles and birds and three in mammals (named dura mater, arachnoid and pia mater). [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001295", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/meninges"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001295", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "meningeal" xsd:string property_value: UBPROP:0000008 "Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx)." xsd:string property_value: UBPROP:0000012 "Not consider part of the CNS/neuraxis in FMA" xsd:string {external_ontology="FMA", seeAlso="https://github.com/obophenotype/uberon/issues/1261"} property_value: UBPROP:0000202 FMA:76821 [Term] id: UBERON:0002361 name: pia mater namespace: uberon def: "The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals." [NLXANAT:090209] subset: pheno_slim subset: uberon_slim synonym: "pia" RELATED [NLXANAT:090209] synonym: "pia mater of neuraxis" EXACT [] synonym: "pial membrane" EXACT [NLXANAT:090209] xref: BTO:0001635 xref: EHDAA2:0004318 xref: EHDAA:1367 xref: EHDAA:1961 xref: EHDAA:2001 xref: EHDAA:2099 xref: EHDAA:2685 xref: EHDAA:2833 xref: EHDAA:2867 xref: EHDAA:3692 xref: EHDAA:3710 xref: EHDAA:6566 xref: EHDAA:6583 xref: EMAPA:32663 xref: FMA:9590 xref: GAID:693 xref: MA:0001116 xref: MESH:D010841 xref: NCIT:C33321 xref: neuronames:1463 xref: NLXANAT:090209 xref: RETIRED_EHDAA2:0001464 xref: SCTID:362305004 xref: UMLS:C0031869 {source="ncithesaurus:Pia_Mater"} xref: Wikipedia:Pia_mater is_a: UBERON:0000391 ! leptomeninx property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray770-en.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray770.png" xsd:anyURI property_value: IAO:0000116 "consider adding adjacency relationship to neuraxis (brain+spinal cord); however note that at this time the meninges may be considered part of the nervous system" xsd:string property_value: UBPROP:0000001 "delicate innermost layer of the meninges-the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative[Wikipedia:Pia_mater]." xsd:string {source="Wikipedia:Pia_mater"} [Term] id: UBERON:0002362 name: arachnoid mater namespace: uberon def: "A think avascular meningeal layer, between the pia mater and the dural mater. It is separated from the pia mater by the subarachnoid space." [ISBN:0471888893, Wikipedia:Arachnoid_mater] subset: pheno_slim subset: uberon_slim synonym: "arachnoid" EXACT [] synonym: "arachnoid mater of neuraxis" EXACT [] synonym: "arachnoid membrane" EXACT [NLXANAT:090208] synonym: "arachnoidea mater" RELATED [BTO:0001636] xref: BTO:0001636 xref: CALOHA:TS-0052 xref: EMAPA:32659 xref: EV:0100314 xref: FMA:9591 xref: GAID:688 xref: MA:0001114 xref: MESH:D001099 xref: NCIT:C32136 xref: neuronames:1464 xref: NLXANAT:090208 xref: SCTID:362304000 xref: UMLS:C1510935 {source="ncithesaurus:Arachnoid_Membrane"} xref: Wikipedia:Arachnoid_mater is_a: UBERON:0000391 ! leptomeninx property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray767.png" xsd:anyURI property_value: RO:0002171 UBERON:0002049 {source="ISBN:0471888893"} [Term] id: UBERON:0002363 name: dura mater namespace: uberon def: "Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections." [NLXANAT:090206] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "dura" RELATED [BTO:0001637] synonym: "dura mater of neuraxis" EXACT [] synonym: "pachymeninges" EXACT [NLXANAT:090206] xref: BTO:0001637 xref: CALOHA:TS-2008 xref: EMAPA:32664 xref: FMA:9592 xref: GAID:691 xref: MA:0001115 xref: MESH:D004388 xref: NCIT:C32488 xref: neuronames:1462 xref: NLXANAT:090206 xref: SCTID:362301008 xref: UMLS:C0013313 {source="ncithesaurus:Dura_Mater"} xref: Wikipedia:Dura_mater is_a: UBERON:0002360 ! meninx property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8e/Meninges-en.svg" xsd:anyURI property_value: RO:0002161 NCBITaxon:32443 {source="ISBN:0073040584"} property_value: UBPROP:0000001 "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid[Wikipedia:Dura_mater]." xsd:string {source="Wikipedia:Dura_mater"} property_value: UBPROP:0000009 "capable of inducing chondrogenesis - requires contact with an epithelium - http://www.ncbi.nlm.nih.gov/pubmed/16496288" xsd:string property_value: UBPROP:0000012 "some ontologies consider dura mater part of the CNS, others dispute this and claim it surrounds it (e.g. DOI:10.1111/joa.12381)[https://github.com/obophenotype/uberon/issues/1261]" xsd:string [Term] id: UBERON:0002410 name: autonomic nervous system namespace: uberon def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [GO:0048483] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ANS" RELATED OMO:0003000 [] synonym: "autonomic division of peripheral nervous system" EXACT [FMA:65553] synonym: "autonomic part of peripheral nervous system" EXACT [FMA:65553] synonym: "divisio autonomica systematis nervosi peripherici" EXACT [FMA:TA] synonym: "divisio autonomica systematis nervosi peripherici" RELATED OMO:0003011 [Wikipedia:Autonomic_nervous_system] synonym: "pars autonomica systematis nervosi peripherici" EXACT [FMA:TA] synonym: "peripheral autonomic nervous system" EXACT [FMA:65553] synonym: "visceral nervous system" EXACT [] xref: AAO:0000033 xref: BIRNLEX:1123 xref: BTO:0002507 xref: CALOHA:TS-2001 xref: EHDA:10095 xref: EHDAA2:0000158 xref: EHDAA:3767 xref: EMAPA:16984 xref: FMA:65553 xref: GAID:706 xref: IDOMAL:0002126 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MA:0000219 xref: MESH:D001341 xref: NCIT:C12673 xref: neuronames:2054 xref: SCTID:362481007 xref: TAO:0001574 xref: UMLS:C0004388 {source="ncithesaurus:Autonomic_Nervous_System", source="BIRNLEX:1123"} xref: UMLS:C1305381 {source="BIRNLEX:1123"} xref: VHOG:0000396 xref: Wikipedia:Autonomic_nervous_system xref: ZFA:0001574 relationship: part_of UBERON:0000010 {source="EMAPA", source="MA", source="NIFSTD", source="ZFA-modified-from-isa"} ! peripheral nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI property_value: UBPROP:0000001 "Nervous system including a portion of the central and peripheral systems and presiding over the control and coordination of the vegetative functions of the organism. It innervates smooth and cardiac muscles and glandular tissues and is responsible for many actions which are more or less automatic (e.g. secretion, vasoconstriction etc.). It consists of the sympathetic and parasympathetic nervous systems. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000396", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000001 "Part of the peripheral nervous system which regulates involuntary functions of the body and consists of the sympathetic and parasympathetic system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000033", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "From comparative analyses of craniate brains, a morphotype of the brain in the earliest craniate stock can be constructed. In marked contrast to cephalochordates, the ancestral craniate morphotype had a plethora of unique features, which included a telencephalon with pallial and subpallial parts, paired olfactory bulbs with substantial projections to most or all of the telencephalic pallium, paired lateral eyes and ears, a lateral line system for both electroreception and mechanoreception, spinal cord dorsal root ganglia, and an autonomic nervous system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000396", ontology="VHOG", source="DOI:10.1002/1097-0185(20000615)261:3<111::AID-AR6>3.0.CO;2-F Butler AB, Chordate evolution and the origin of craniates: An old brain in a new head. AnaT Rec (New Anat) (2000)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "FMA splits this into peripheral and nervous parts; GO has ANS directly under NS; PNS is a sib" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002420 name: basal ganglion namespace: uberon def: "An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified]." [BIRNLEX:826] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "basal ganglia" RELATED OMO:0003004 [] synonym: "basal ganglion of telencephalon" EXACT [] synonym: "basal nucleus" RELATED [MA:0000184] synonym: "nuclei basales" RELATED OMO:0003011 [Wikipedia:Basal_ganglia] xref: BTO:0000235 xref: CALOHA:TS-1149 xref: DHBA:10332 xref: EFO:0000904 xref: FMA:62514 xref: SCTID:244434001 is_a: UBERON:0003528 ! brain gray matter is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis relationship: part_of UBERON:0010011 ! collection of basal ganglia property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Basal_Ganglia_and_Related_Structures.svg" xsd:anyURI property_value: IAO:0000116 "it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the set of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done." xsd:string [Term] id: UBERON:0002421 name: hippocampal formation namespace: uberon def: "Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "archipallium" RELATED [MA:0000189] synonym: "formatio hippocampi" RELATED OMO:0003011 [NeuroNames:177] synonym: "hippocampus" NARROW INCONSISTENT [BTO:0000601, GO:0021766] synonym: "hippocampus (Crosby)" EXACT [] synonym: "major hippocampus" RELATED [BTO:0000601] synonym: "primal cortex" RELATED [MA:0000189] synonym: "seahorse" RELATED [NeuroNames:177] xref: BAMS:Hi xref: BAMS:HiF xref: BAMS:HPF xref: BIRNLEX:715 xref: BM:Tel-HF xref: BTO:0000601 xref: DHBA:10294 xref: EMAPA:35405 xref: FMA:74038 xref: HBA:4249 xref: MA:0000189 xref: MBA:1089 xref: neuronames:177 {source="BIRNLEX:715"} xref: PBA:4003 xref: SCTID:422867004 xref: UMLS:C0175202 {source="BIRNLEX:715"} xref: Wikipedia:Hippocampal_formation is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 {source="GO", source="ISBN:0471888893"} ! pallium relationship: part_of UBERON:0000956 {source="MBA-indirect", source="NIFSTD"} ! cerebral cortex property_value: IAO:0000232 "The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum" xsd:string {source="NIF"} property_value: RO:0002171 UBERON:0002264 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "BTO:0000601 is placed here since it includes the DG. GO also includes dentate gyrus development as part of hippocampus development, so we assume when GO says 'hippocampus' it means 'hippocampal formation'. In ABA HPF = (.. subiculum) + HIP, HIP = DG + AH." xsd:string {external_ontology="BTO"} [Term] id: UBERON:0002422 name: fourth ventricle namespace: uberon def: "Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures." [BIRNLEX:1256] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "4th ventricle" RELATED [MA:0000196] synonym: "fourth ventricle proper" RELATED [BAMS:V4] synonym: "hindbrain ventricle" RELATED NON_MAMMAL [VHOG:0000006] synonym: "IVth ventricle" RELATED [VHOG:0000006] synonym: "rhombencephalic ventricle" RELATED [VHOG:0000006] synonym: "rhombencephalic vesicle" NARROW [ZFA:0000110] synonym: "ventricle IV" EXACT [ZFA:0000110] synonym: "ventricle of hindbrain" RELATED NON_MAMMAL [BTO:0003426] synonym: "ventricle of rhombencephalon" RELATED [BTO:0003426] synonym: "ventriculus quartus" RELATED OMO:0003011 [Wikipedia:Fourth_ventricle] xref: AAO:0011043 xref: BAMS:4V xref: BAMS:V4 xref: BIRNLEX:1256 xref: BM:Pons-4V xref: BTO:0003426 xref: CALOHA:TS-2015 xref: DHBA:10669 xref: DHBA:12805 xref: DMBA:126651782 xref: EHDAA2:0000100 xref: EHDAA:896 xref: EMAPA:16917 xref: EV:0100310 xref: FMA:78469 xref: GAID:610 xref: HBA:9421 xref: MA:0000196 xref: MBA:145 xref: MESH:D020546 xref: NCIT:C12828 xref: neuronames:621 xref: SCTID:180932000 xref: TAO:0000110 xref: UMLS:C0149556 {source="ncithesaurus:Fourth_Ventricle_of_the_Brain"} xref: VHOG:0000006 xref: Wikipedia:Fourth_ventricle xref: XAO:0003099 xref: ZFA:0000110 is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002028 ! hindbrain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000110", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011043", ontology="AAO", source="UBERON:0002422"} property_value: UBPROP:0000001 "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO][GO:0021592]." xsd:string {source="GO:0021592"} property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000006", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002430 name: lateral hypothalamic area namespace: uberon def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [Wikipedia:Lateral_hypothalamic_area] subset: uberon_slim synonym: "area hypothalamica lateralis" EXACT OMO:0003011 [FMA:62030, FMA:TA] synonym: "area lateralis hypothalami" RELATED OMO:0003011 [NeuroNames:426] synonym: "lateral division of hypothalamus" EXACT [] synonym: "lateral group of hypothalamic nuclei" EXACT [] synonym: "lateral hypothalamic area (Nissl 1913)" RELATED [NeuroNames:426] synonym: "lateral hypothalamic area proper" RELATED [BAMS:LHA] synonym: "lateral hypothalamic group" EXACT [] synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834] synonym: "lateral hypothalamic region" EXACT [FMA:62030] synonym: "lateral hypothalamic zone (Crosby)" EXACT [] synonym: "LH" BROAD OMO:0003000 [BIRNLEX:4037, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:HLA xref: BAMS:LH xref: BAMS:LHA xref: BIRNLEX:4037 xref: BM:Die-Hy-HLA xref: BTO:0006481 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35480 xref: FMA:62030 xref: GAID:640 xref: MA:0000834 xref: MBA:194 xref: MESH:D007026 xref: neuronames:426 {source="BIRNLEX:4037"} xref: UMLS:C0020654 {source="BIRNLEX:4037"} xref: Wikipedia:Lateral_hypothalamic_area is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0001906 {source="ABA"} property_value: RO:0002171 UBERON:0001907 {source="ABA"} property_value: RO:0002171 UBERON:0001931 {source="ABA"} property_value: RO:0002171 UBERON:0001933 {source="ABA"} property_value: RO:0002175 NCBITaxon:117569 {source="Ariens, p. 1192"} [Term] id: UBERON:0002432 name: pars intermedia of adenohypophysis namespace: uberon def: "The thin boundary between the adenohypophysis and neurohypophysis of the pituitary that produces melanocyte stimulating hormone (MSH); this area is small or absent in mammalian adults." [MGI:csmith, MP:0008130] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "intermediate lobe" RELATED [BTO:0001788] synonym: "intermediate lobe of adenohypophysis" EXACT [] synonym: "intermediate lobe of pituitary" EXACT [] synonym: "pars intermedia" EXACT [MA:0000855] synonym: "pars intermedia (glandula pituitaria)" EXACT OMO:0003011 [FMA:74632, FMA:TA] synonym: "pars intermedia adenohypophyseos" RELATED OMO:0003011 [BTO:0001788, Wikipedia:Pars_intermedia] synonym: "pars intermedia adenohypophysis" EXACT OMO:0003011 [FMA:74632, FMA:TA] synonym: "pars intermedia lobi anterior hypophyseos" RELATED [BTO:0001788] synonym: "pars intermedia of anterior lobe of pituitary gland" EXACT [FMA:74632] xref: BAMS:IPit xref: BTO:0001788 xref: CALOHA:TS-0795 xref: EHDAA2:0001417 xref: EHDAA:8765 xref: EMAPA:17516 xref: FMA:74632 xref: MA:0000855 xref: neuronames:409 xref: SCTID:245534008 xref: TAO:0001197 xref: VHOG:0001178 xref: Wikipedia:Pars_intermedia xref: ZFA:0001197 relationship: part_of UBERON:0002196 {source="FMA", source="ZFA"} ! adenohypophysis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:8782 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:117569 {source="Ariens, p. 1192"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001178", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002433 name: pars tuberalis of adenohypophysis namespace: uberon def: "The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]." [Wikipedia:Pars_tuberalis] subset: uberon_slim subset: vertebrate_core synonym: "pars infundibularis of adenohypophysis" EXACT [FMA:74631] synonym: "pars tuberalis" EXACT [MA:0000856] synonym: "pars tuberalis (glandula pituitaria)" EXACT OMO:0003011 [FMA:74631, FMA:TA] synonym: "pars tuberalis adenohypophyseos" RELATED OMO:0003011 [Wikipedia:Pars_tuberalis] synonym: "pars tuberalis adenohypophysis" EXACT OMO:0003011 [FMA:74631, FMA:TA] synonym: "pars tuberalis of anterior lobe of pituitary gland" EXACT [FMA:74631] xref: BTO:0001739 xref: EHDAA2:0001419 xref: EHDAA:8767 xref: EMAPA:17517 xref: FMA:74631 xref: MA:0000856 xref: TAO:0001196 xref: VHOG:0001114 xref: Wikipedia:Pars_tuberalis relationship: part_of UBERON:0002196 ! adenohypophysis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG" xsd:anyURI property_value: RO:0002161 NCBITaxon:7955 {source="ZFA:0001196"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001114", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002434 name: pituitary stalk namespace: uberon alt_id: UBERON:0003014 alt_id: UBERON:0014606 def: "The apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland." [ISBN:0-683-40008-8, MP:0009463] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "hypophyseal infundibulum" RELATED [BIRNLEX:1248] synonym: "hypophyseal stalk" EXACT [MP:0009463] synonym: "hypophysial stalk" RELATED [ZFA:0001199] synonym: "InfS" BROAD OMO:0003000 [BIRNLEX:1248, NIFSTD:NeuroNames_abbrevSource] synonym: "infundibular stalk" EXACT [BIRNLEX:1248] synonym: "infundibular stem" BROAD [MP:0009463] synonym: "infundibular stem" EXACT HUMAN_PREFERRED [BIRNLEX:1248] synonym: "infundibular stem of neurohypophysis" EXACT [BIRNLEX:1248, FMA:74635] synonym: "infundibulum" EXACT [MA:0000858, ZFA:0001199] synonym: "infundibulum (lobus posterior) (glandula pituitaria)" EXACT OMO:0003011 [FMA:74635, FMA:TA] synonym: "infundibulum hypophysis" EXACT OMO:0003011 [FMA:74635, FMA:TA] synonym: "infundibulum neurohypophyseos" RELATED OMO:0003011 [Wikipedia:Pituitary_stalk] synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199] synonym: "infundibulum of neurohypophysis" EXACT [FMA:74635] synonym: "infundibulum of pituitary gland" EXACT [FMA:74635] synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635] synonym: "infundibulum of posterior lobe of pituitary gland" RELATED [BIRNLEX:1248] synonym: "neurohypophysis infundibulum" EXACT [FMA:74635] synonym: "pars tuberalis (hypophysis)" RELATED OMO:0003011 [NeuroNames:408] synonym: "pituitary infundibular stalk" EXACT [] synonym: "THP" BROAD OMO:0003000 [BIRNLEX:912, NIFSTD:NeuroNames_abbrevSource] synonym: "tuberal part of hypophysis" EXACT [FMA:74635] synonym: "tuberal part of the hypophysis" RELATED [NeuroNames:408] xref: BAMS:INF xref: BAMS:InfS xref: BAMS:THP xref: BIRNLEX:1248 xref: BIRNLEX:912 xref: BTO:0000768 xref: DHBA:10643 xref: DMBA:15690 xref: EHDAA2:0000828 xref: EHDAA:7538 xref: EMAPA:17520 xref: FMA:74635 xref: HBA:9358 xref: MA:0000858 xref: NCIT:C32228 xref: NCIT:C45912 xref: neuronames:405 {source="BIRNLEX:1248"} xref: neuronames:408 {source="BIRNLEX:912"} xref: SCTID:245529009 xref: SCTID:425300001 xref: TAO:0001199 xref: UMLS:C0175325 {source="BIRNLEX:1248"} xref: UMLS:C0447641 {source="BIRNLEX:1248", source="BIRNLEX:912"} xref: UMLS:C0751440 {source="ncithesaurus:Pituitary_Stalk"} xref: VHOG:0000245 xref: Wikipedia:Pituitary_stalk xref: XAO:0004210 xref: ZFA:0001199 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002198 {inconsistent_with="NIFSTD", source="FMA", source="MA", source="NIFSTD", source="ZFA"} ! neurohypophysis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG" xsd:anyURI property_value: UBPROP:0000001 "A short stalk connecting the pituitary with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001199", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000245", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002435 name: striatum namespace: uberon def: "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum] subset: pheno_slim subset: uberon_slim synonym: "caudate putamen" RELATED [BIRNLEX:1672] synonym: "corpus striatum" RELATED [MA:0000891] synonym: "corpus striatum (Zilles)" RELATED OMO:0003011 [NeuroNames:225] synonym: "dorsal striatum" RELATED [BIRNLEX:1672] synonym: "neostriatum" EXACT [BIRNLEX:1672, GO:0021756, Wikipedia:Striatum] synonym: "neuraxis striatum" EXACT [FMA:83683] synonym: "striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum] synonym: "striated nucleus" RELATED [BTO:0000418] synonym: "striatum" EXACT [BIRNLEX:1672] synonym: "striatum of neuraxis" EXACT [FMA:83683] xref: BAMS:STR xref: BAMS:Str xref: BAMS:Striatum xref: BIRNLEX:1672 xref: BM:N xref: BTO:0000418 xref: DHBA:10333 xref: DMBA:15851 xref: EFO:0000109 xref: EMAPA:17549 xref: FMA:77618 xref: FMA:83683 xref: HBA:4277 xref: MA:0000891 xref: MBA:477 xref: MESH:D017072 xref: NCIT:C111122 xref: ncithesaurus:Striatum xref: neuronames:225 {source="BIRNLEX:1672"} xref: PBA:10080 xref: UMLS:C0162512 {source="BIRNLEX:1672"} xref: Wikipedia:Striatum is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0000204 {source="GO"} ! ventral part of telencephalon relationship: part_of UBERON:0000369 {source="BTO"} ! corpus striatum relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion relationship: part_of UBERON:0006098 {source="NIFSTD"} ! basal nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg" xsd:anyURI property_value: RO:0002171 UBERON:0006514 {source="ABA"} property_value: UBPROP:0000007 "striatal" xsd:string property_value: UBPROP:0000012 "FMA divides 'striatum of neuraxis' into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see Wikipedia:Striatum#History. Check caudoputamen" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002436 name: primary visual cortex namespace: uberon def: "The visual area of the brain that is specialized for processing information about static and moving objects. The primary visual cortex, which is defined by its function or stage in the visual system, is approximately equivalent to the striate cortex, also known as Brodmann area 17, which is defined by its anatomical location." [WikipediaVersioned:Visual_cortex&oldid=1069729211] comment: In some species, parcellations of lobes are not well defined if at all. The primary visual cortex being part of the occiptal lobe hence could refer to it being part of the most posterior region of the mammalian cerebral cortex. subset: pheno_slim subset: uberon_slim synonym: "area striata" RELATED [] synonym: "calcarine cortex" RELATED [BrainInfo:2102] synonym: "nerve X" RELATED [NeuroNames:702] synonym: "occipital visual neocortex" RELATED [GEO:GSM336648] synonym: "primary visual area" RELATED [BAMS:VISp] synonym: "striate area" RELATED [BAMS:17] synonym: "striate cortex" EXACT [FMA:236871, Wikipedia:Visual_cortex] synonym: "V1" RELATED [Wikipedia:Visual_cortex] synonym: "visual area one" RELATED [Wikipedia:Visual_cortex] synonym: "visual area V1" RELATED [BTO:0004703] synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: BAMS:17 xref: BAMS:V1 xref: BAMS:VISp xref: BM:Tel-Cx-V1 xref: BTO:0004703 xref: EMAPA:35708 xref: FMA:236871 xref: FMA:68614 xref: MA:0000914 xref: MBA:385 xref: NCIT:C97340 xref: neuronames:702 {source="BIRNLEX:1748"} xref: NLX:143552 xref: UMLS:C0038446 {source="ncithesaurus:Primary_Visual_Cortex"} is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain is_a: UBERON:8440011 ! cortical visual area relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002437 name: cerebral hemisphere white matter namespace: uberon def: "White matter that is part of a cerebral hemisphere." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "cerebral hemisphere white matter" EXACT [] synonym: "cerebral white matter" EXACT [MA:0000945] synonym: "hemisphere white matter" RELATED [] synonym: "region of cerebral white matter" RELATED [FMA:256174] synonym: "substantia medullaris cerebri" RELATED OMO:0003011 [NeuroNames:189] synonym: "white matter structure of cerebral hemisphere" EXACT [FMA:61822] xref: BAMS:cw xref: BIRNLEX:711 xref: BTO:0000236 xref: CALOHA:TS-2362 xref: EMAPA:35237 xref: FMA:241998 xref: FMA:256174 xref: FMA:61822 xref: MA:0000945 xref: NCIT:C49347 xref: neuronames:189 {source="BIRNLEX:711"} xref: SCTID:361691006 xref: UMLS:C0152295 {source="ncithesaurus:Cerebral_White_Matter", source="BIRNLEX:711"} xref: UMLS:C1284115 {source="BIRNLEX:711"} is_a: UBERON:0011299 ! white matter of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: IAO:0000232 "sometimes the term 'cerebral white matter' may be used generically but here is refers specifically to the white matter in a hemisphere" xsd:string property_value: UBPROP:0000012 "The BTO class is inconsistent as it is part of the brain and spinal cord." xsd:string {external_ontology="BTO"} [Term] id: UBERON:0002438 name: ventral tegmental nucleus namespace: uberon def: "A nucleus of brain that is part of a ventral tegmental area." [OBOL:automatic] subset: vertebrate_core synonym: "anterior tegmental nuclei" RELATED INCONSISTENT [FMA:72435] synonym: "anterior tegmental nucleus" RELATED INCONSISTENT [FMA:72435, http://www.medilexicon.com/medicaldictionary.php?t=61761] synonym: "deep tegmental nucleus of Gudden" EXACT [FMA:72435] synonym: "ganglion profundum tegmenti" RELATED OMO:0003011 [NeuroNames:518] synonym: "ganglion tegmenti ventrale" RELATED OMO:0003011 [NeuroNames:518] synonym: "nucleus of Gudden" RELATED [MA:0001031] synonym: "nucleus tegmentales anteriores" RELATED [FMA:TA] synonym: "nucleus tegmentalis anterior" RELATED [FMA:TA] synonym: "nucleus tegmenti ventralis" RELATED OMO:0003011 [NeuroNames:518] synonym: "nucleus ventralis tegmenti" RELATED OMO:0003011 [NeuroNames:518] synonym: "nucleus ventralis tegmenti (Gudden)" RELATED OMO:0003011 [NeuroNames:518] synonym: "rostral tegmental nucleus" RELATED [TAO:0000275] synonym: "ventral raphe tegmental nucleus" EXACT [FMA:72435] synonym: "ventral tegmental nuclei" EXACT [FMA:72435] synonym: "ventral tegmental nucleus (gudden)" EXACT [FMA:72435] synonym: "ventral tegmental nucleus of Gudden" EXACT [FMA:72435] synonym: "VTg" BROAD OMO:0003000 [BIRNLEX:1421, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VTg xref: BAMS:VTN xref: BIRNLEX:1421 xref: DHBA:12266 xref: DMBA:17007 xref: EMAPA:35914 xref: FMA:72435 xref: HBA:9069 xref: MA:0001031 xref: MBA:757 xref: neuronames:518 {source="BIRNLEX:1421"} xref: SCTID:369244006 xref: TAO:0000275 xref: UMLS:C0175394 {source="BIRNLEX:1421"} xref: ZFA:0000275 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {conflicts_with="DHBA", conflicts_with="EMAPA", conflicts_with="MA", source="FMA", source="HBA", source="NIFSTD"} ! midbrain tegmentum property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} property_value: UBPROP:0000012 "ventral and anterior tegmental nucleus are synonyms in FMA, but we split these into seperate classes. This is consistent with MA, ABA and neuronames, which treat these as distinct (NN suggest the anterior is a rodent specific structure)" xsd:string {external_ontology="FMA"} property_value: UBPROP:0000015 "this is part of pons and brainstem in MA, but this leads to an inconsistency with ABA. We err on the side of safety, and exclude the relationship to the pons here." xsd:string [Term] id: UBERON:0002439 name: myenteric nerve plexus namespace: uberon def: "One of two ganglionated neural networks which together form the enteric nervous system. The myenteric (Auerbach's) plexus is located between the longitudinal and circular muscle layers of the gut. Its neurons project to the circular muscle, to other myenteric ganglia, to submucosal ganglia, or directly to the epithelium, and play an important role in regulating and patterning gut motility." [NLXANAT:100306] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Auberbach plexus" EXACT [NLXANAT:100306] synonym: "Auberbach's plexus" EXACT [NLXANAT:100306] synonym: "Auberbachs plexus" EXACT [NLXANAT:100306] synonym: "Auerbach's plexus" EXACT [FMA:63252, HP:0002251] synonym: "Meissner's plexus" RELATED INCONSISTENT [FMA:63252] synonym: "myenteric plexus" EXACT [] synonym: "plexus myentericus" RELATED [BTO:0002436] synonym: "plexus nervosus submucosus" EXACT OMO:0003011 [FMA:63252, FMA:TA] synonym: "plexus submucosus" EXACT OMO:0003011 [FMA:63252, FMA:TA] synonym: "Remak's plexus" EXACT [FMA:63252] synonym: "submucous plexus" RELATED [] xref: BAMS:myp xref: BTO:0002436 xref: EMAPA:32847 xref: FMA:63252 xref: GAID:798 xref: MA:0001148 xref: MESH:D009197 xref: NCIT:C52748 xref: NLXANAT:100306 xref: SCTID:267716001 xref: UMLS:C0027028 {source="ncithesaurus:Myenteric_Nerve_Plexus"} xref: Wikipedia:Auerbach's_plexus is_a: UBERON:0000429 ! enteric plexus property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "plexus of unmyelinated nerve fibers and postganglionic autonomic cell bodies lying in the muscular coat of the esophagus, stomach and intestines that communicate with the submucosal, subserosal and enteric plexuses[MP][MP:0010801]." xsd:string {source="MP:0010801"} property_value: UBPROP:0000012 "note that FMA uses Meissner's plexus as a synonym, rather than separate class" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002440 name: inferior cervical ganglion namespace: uberon def: "The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]." [Wikipedia:Inferior_cervical_ganglion] subset: uberon_slim synonym: "cervico-thoracic" RELATED [EMAPA:18439] synonym: "cervico-thoracic ganglion" RELATED [EMAPA:18439] synonym: "ganglion cervicale inferioris" RELATED [BTO:0000240] synonym: "ganglion cervicale inferius" RELATED OMO:0003011 [Wikipedia:Inferior_cervical_ganglion] synonym: "stellate ganglion" RELATED [MA:0001154] synonym: "variant cervical ganglion" EXACT [] xref: BAMS:ICGn xref: BTO:0000240 xref: EHDAA:8939 xref: EMAPA:18439 xref: FMA:6961 xref: MA:0001154 xref: NCIT:C92211 xref: RETIRED_EHDAA2:0000815 xref: SCTID:279280008 xref: UMLS:C0229000 {source="ncithesaurus:Inferior_Cervical_Ganglion"} xref: Wikipedia:Inferior_cervical_ganglion is_a: UBERON:0001991 ! cervical ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png" xsd:anyURI [Term] id: UBERON:0002441 name: cervicothoracic ganglion namespace: uberon def: "The group of neurons formed by the fusion of the inferior cervical and first thoracic ganglia." [ISBN:0-683-40008-8, MESH:A08.340.315.350.800, MP:0001017] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cervicothoracic sympathetic ganglion" EXACT [] synonym: "ganglion cervicothoracicum" EXACT OMO:0003011 [FMA:6469, FMA:TA] synonym: "ganglion stellatum" EXACT OMO:0003011 [FMA:6469, FMA:TA] synonym: "stellate ganglion" EXACT [] xref: BAMS:GSTL xref: BTO:0001815 xref: EMAPA:18226 xref: FMA:6469 xref: GAID:711 xref: MA:0001157 xref: MESH:D013233 xref: SCTID:181101006 xref: Wikipedia:Cervicothoracic_ganglion is_a: UBERON:0001991 ! cervical ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray845.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002442 name: axillary nerve trunk namespace: uberon synonym: "circumflex nerve trunk" RELATED [MA:0001175] synonym: "right axillary neural trunk" EXACT [] synonym: "trunk of right axillary nerve" EXACT [FMA:65265] xref: EMAPA:37719 {source="MA:th"} xref: FMA:65265 xref: MA:0001175 is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0001493 ! axillary nerve [Term] id: UBERON:0002464 name: nerve trunk namespace: uberon alt_id: UBERON:0001147 synonym: "peripheral nerve trunk" EXACT [EMAPA:16986] synonym: "trunk of nerve" EXACT [] synonym: "trunk of peripheral nerve" EXACT [] xref: BTO:0000927 xref: EHDAA:4675 xref: EMAPA:16986 xref: FMA:14383 xref: FMA:5913 xref: MA:0000229 xref: MA:0002408 xref: SCTID:281248001 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001021 ! nerve property_value: UBPROP:0000001 "Segment of neural tree organ which consists of nerve fiber bundles aggregated to form a cable-like structure that branches off to different nerves; together with all nerves of the same tree. Example: trunk of cranial nerve, trunk of spinal nerve, trunk of peripheral nerve[FMA:5913]." xsd:string {source="FMA:5913"} [Term] id: UBERON:0002473 name: intercerebral commissure namespace: uberon def: "A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum." [http://orcid.org/0000-0002-6601-2165] synonym: "commissure of cerebrum" RELATED [] synonym: "inter-hemispheric commissure" RELATED [] synonym: "interhemispheric commissure" RELATED [MA:0002721] xref: EMAPA:35435 xref: FMA:67930 xref: MA:0002721 xref: neuronames:1559 xref: SCTID:360567002 is_a: UBERON:0019294 ! commissure of telencephalon relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter [Term] id: UBERON:0002474 name: cerebellar peduncular complex namespace: uberon def: "A composite structure of the brain stem, which is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF, based on NN]." [BIRNLEX:970] subset: uberon_slim synonym: "basal ganglia (anatomic)" RELATED [NeuroNames:224] synonym: "cerebellar peduncles" EXACT [] synonym: "cerebellar peduncles and decussations" EXACT [BIRNLEX:970] synonym: "cerebellar peduncles set" EXACT [] synonym: "cerebellum peduncles" EXACT [] synonym: "corpus striatum (Savel'ev)" RELATED OMO:0003011 [NeuroNames:224] synonym: "ganglia basales" RELATED OMO:0003011 [NeuroNames:224] synonym: "pedunculi cerebellares" EXACT OMO:0003011 [FMA:77791, FMA:TA] synonym: "set of cerebellar peduncles" RELATED [FMA:77791] xref: BAMS:cbp xref: BIRNLEX:970 xref: FMA:77791 xref: MBA:752 xref: neuronames:224 {source="BIRNLEX:970"} xref: UMLS:C0228514 {source="BIRNLEX:970"} xref: Wikipedia:Cerebellar_peduncle is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002317 {source="NIF-isa"} ! white matter of cerebellum relationship: part_of UBERON:0014891 {source="MA"} ! brainstem white matter property_value: IAO:0000116 "TODO - this requires work for making consistent with ABA, which strictly separates cerebellum from brainstem. in MA, cerebellar peduncle is part of both brainstem and cerebellar white matter." xsd:string [Term] id: UBERON:0002475 name: saphenous nerve namespace: uberon def: "The largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve] subset: uberon_slim synonym: "nervus saphenus" RELATED OMO:0003011 [Wikipedia:Saphenous_nerve] xref: EMAPA:36625 xref: FMA:45262 xref: MA:0002761 xref: SCTID:181079005 xref: Wikipedia:Saphenous_nerve is_a: UBERON:0003431 ! leg nerve relationship: part_of UBERON:0001267 ! femoral nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/de/Gray827.png" xsd:anyURI [Term] id: UBERON:0002476 name: lateral globus pallidus namespace: uberon def: "The more lateral of the two segments of the globus pallidus, abutting the putamen." [BIRNLEX:1610] subset: human_reference_atlas subset: uberon_slim synonym: "external globus pallidus" EXACT [] synonym: "external pallidum" EXACT [BIRNLEX:1610] synonym: "external part of globus pallidus" EXACT [BIRNLEX:1610] synonym: "globus pallidus (rat)" RELATED OMO:0003011 [NeuroNames:232] synonym: "globus pallidus extermal segment" EXACT [BIRNLEX:1610] synonym: "globus pallidus external segment" EXACT [BIRNLEX:1610, FMA:61839, MA:0002767] synonym: "globus pallidus externus" EXACT [] synonym: "globus pallidus lateral part" RELATED [BAMS:GPl] synonym: "globus pallidus lateral segment" RELATED [MA:0002767] synonym: "globus pallidus lateralis" EXACT [BTO:0002247] synonym: "globus pallidus, external segment" RELATED [NeuroNames:232] synonym: "globus pallidus, lateral part" RELATED [NeuroNames:232] synonym: "globus pallidus, lateral segment" EXACT [] synonym: "globus pallidus, pars externa" RELATED OMO:0003011 [NeuroNames:232] synonym: "lateral division of globus pallidus" RELATED [NeuroNames:232] synonym: "lateral pallidal segment" EXACT [] synonym: "lateral pallidum" EXACT [BIRNLEX:1610] synonym: "lateral part of globus pallidus" EXACT [] synonym: "lateral segment of globus pallidus" EXACT [BIRNLEX:1610] synonym: "lateral segment of the globus pallidus" RELATED [NeuroNames:232] synonym: "nucleus lateralis globi pallidi" RELATED OMO:0003011 [NeuroNames:232] synonym: "pallidum dorsal region external segment" RELATED [BAMS:GPe] synonym: "pallidum I" RELATED [BTO:0002247] synonym: "pallidus II" EXACT [FMA:61839] synonym: "pars lateralis globi pallidi medialis" EXACT OMO:0003011 [FMA:61839, FMA:TA] xref: BAMS:EGP xref: BAMS:GPe xref: BAMS:GPl xref: BAMS:LGP xref: BIRNLEX:1610 xref: BTO:0002247 xref: EHDAA2:0004462 xref: EMAPA:37638 {source="MA:th"} xref: FMA:61839 xref: HBA:12897 xref: MA:0002767 xref: MBA:1022 xref: neuronames:232 {source="BIRNLEX:1610"} xref: PBA:10099 xref: SCTID:361560008 xref: UMLS:C0262267 {source="BIRNLEX:1610"} xref: Wikipedia:Lateral_globus_pallidus is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001875 ! globus pallidus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif" xsd:anyURI property_value: RO:0002171 UBERON:0002477 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted][Wikipedia:Lateral_globus_pallidus]." xsd:string {source="Wikipedia:Lateral_globus_pallidus"} [Term] id: UBERON:0002477 name: medial globus pallidus namespace: uberon def: "The more medial segment of the globus pallidus." [BIRNLEX:1555] comment: See also: endopeduncular nucleus subset: human_reference_atlas subset: uberon_slim synonym: "entopeduncular nucleus" RELATED [MA:0002768] synonym: "entopeduncular nucleus (monakow)" EXACT [FMA:61840] synonym: "globus pallidus inernal segment" RELATED [MA:0002768] synonym: "globus pallidus interna" EXACT OMO:0003011 [] synonym: "globus pallidus internal segment" EXACT [FMA:61840] synonym: "globus pallidus internus" EXACT OMO:0003011 [FMA:61840] synonym: "globus pallidus medial part" RELATED [BAMS:GPm] synonym: "globus pallidus medial segment" EXACT [FMA:61840] synonym: "globus pallidus medial segment" RELATED [MA:0002768] synonym: "globus pallidus medialis" EXACT OMO:0003011 [BTO:0002248, FMA:TA] synonym: "globus pallidus pars medialis" RELATED OMO:0003011 [NeuroNames:233] synonym: "globus pallidus, internal segment" RELATED [NeuroNames:233] synonym: "globus pallidus, medial part" RELATED [NeuroNames:233] synonym: "globus pallidus, medial segment" EXACT [FMA:61840] synonym: "globus pallidus, pars interna" RELATED OMO:0003011 [NeuroNames:233] synonym: "internal globus pallidus" EXACT [FMA:61840] synonym: "internal pallidum" EXACT [BIRNLEX:1555] synonym: "internal part of globus pallidus" EXACT [BIRNLEX:1555] synonym: "medial division of globus pallidus" RELATED [NeuroNames:233] synonym: "medial globus pallidus (entopeduncular nucleus)" RELATED [BAMS:MGP] synonym: "medial pallidal segment" EXACT [FMA:61840] synonym: "medial part of globus pallidus" EXACT [FMA:61840] synonym: "medial segment of globus pallidus" EXACT [BIRNLEX:1555] synonym: "medial segment of the globus pallidus" RELATED [NeuroNames:233] synonym: "mesial pallidum" EXACT [FMA:61840] synonym: "nucleus medialis globi pallidi" RELATED OMO:0003011 [NeuroNames:233] synonym: "pallidum dorsal region internal segment" RELATED [BAMS:GPi] synonym: "pallidum I" RELATED [] synonym: "pallidum II" RELATED [BTO:0002248] synonym: "pallidus I" EXACT [FMA:61840] synonym: "pallidus I" RELATED [] synonym: "pars medialis globi pallidi" EXACT OMO:0003011 [FMA:61840, FMA:TA] synonym: "principal medial geniculate nucleus" RELATED [BAMS:MGP] xref: BAMS:GPi xref: BAMS:GPm xref: BAMS:IGP xref: BAMS:MGP xref: BIRNLEX:1555 xref: BTO:0002248 xref: DHBA:10344 xref: DMBA:15830 xref: EMAPA:37639 {source="MA:th"} xref: FMA:61840 xref: HBA:12898 xref: MA:0002768 xref: MBA:1031 xref: neuronames:233 {source="BIRNLEX:1555"} xref: PBA:10098 xref: SCTID:361562000 xref: UMLS:C0262283 {source="BIRNLEX:1555"} xref: Wikipedia:Medial_globus_pallidus is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001875 {source="MA"} ! globus pallidus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif" xsd:anyURI property_value: RO:0002171 UBERON:0002476 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The medial globus pallidus (or internal, GPi) is one of the output nuclei of the basal ganglia. The GABA-containing neurons send their axons to specific nuclei of the dorsal thalamus (VA and VL), to the centromedian complex and to the pedunculopontine complex. The efferent bundle is constituted first of the ansa and fasciculus lenticularis, then crosses the internal capsule as the Edinger's comb system then arrives at the laterosuperior corner of the subthalamic nucleus and constitutes the Forel's field H2, then H, and suddenly changes its direction to form H1 that goes to the inferior part of the thalamus. The distribution of axonal islands is widespread in the lateral region of the thalamus. The innervation of the central region is done by collaterals. [WP,unvetted][Wikipedia:Medial_globus_pallidus]." xsd:string {source="Wikipedia:Medial_globus_pallidus"} [Term] id: UBERON:0002479 name: dorsal lateral geniculate nucleus namespace: uberon def: "The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe." [http://www.medilexicon.com/medicaldictionary.php?t=61422] synonym: "corpus geniculatum laterale (Hassler)" RELATED OMO:0003011 [NeuroNames:353] synonym: "DLG" BROAD OMO:0003000 [BIRNLEX:1595, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] synonym: "dorsal part of the lateral geniculate complex" RELATED [NeuroNames:353] synonym: "lateral geniculate complex, dorsal part" EXACT [] synonym: "lateral geniculate nucleus dorsal part" RELATED [BAMS:LGd] synonym: "lateral geniculate nucleus, dorsal part" EXACT [NeuroNames:353] synonym: "nucleus corporis geniculati lateralis, pars dorsalis" RELATED OMO:0003011 [NeuroNames:353] synonym: "nucleus dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:62214, FMA:TA] synonym: "nucleus geniculatus lateralis dorsalis" RELATED OMO:0003011 [NeuroNames:353] synonym: "nucleus geniculatus lateralis pars dorsalis" EXACT [BIRNLEX:1595] xref: BAMS:DLG xref: BAMS:LGd xref: BIRNLEX:1595 xref: BM:GLd xref: DHBA:10430 xref: DMBA:16436 xref: EMAPA:35290 xref: FMA:62214 xref: HBA:4440 xref: MA:0002775 xref: MBA:170 xref: neuronames:353 {source="BIRNLEX:1595"} xref: PBA:128013074 xref: UMLS:C0175292 {source="BIRNLEX:1595"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001926 ! lateral geniculate body property_value: RO:0002171 UBERON:0001927 {source="ABA"} [Term] id: UBERON:0002480 name: ventral lateral geniculate nucleus namespace: uberon synonym: "corpus geniculatum externum, nucleus accessorius" EXACT [BIRNLEX:1597] synonym: "corpus geniculatum laterale, pars oralis" EXACT [BIRNLEX:1597] synonym: "DLG" BROAD OMO:0003000 [BIRNLEX:1597, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal_nucleus_of_lateral_geniculate_body" EXACT [BIRNLEX:1597] synonym: "griseum praegeniculatum" EXACT [BIRNLEX:1597] synonym: "lateral geniculate complex, ventral part" EXACT [] synonym: "lateral geniculate complex, ventral part (kolliker)" EXACT [BIRNLEX:1597] synonym: "lateral geniculate complex, ventral part (Kvlliker)" RELATED [NeuroNames:354] synonym: "lateral geniculate nucleus ventral part" RELATED [BAMS:LGv] synonym: "lateral geniculate nucleus, ventral part" EXACT [BIRNLEX:1597] synonym: "nucleus corporis geniculati lateralis, pars ventralis" EXACT [BIRNLEX:1597] synonym: "nucleus geniculatus lateralis pars ventralis" RELATED OMO:0003011 [NeuroNames:354] synonym: "nucleus praegeniculatus" EXACT [BIRNLEX:1597] synonym: "nucleus pregeniculatum" EXACT [BIRNLEX:1597] synonym: "nucleus pregeniculatus" EXACT OMO:0003011 [FMA:62215, FMA:TA] synonym: "nucleus ventralis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:62215, FMA:TA] synonym: "praegeniculatum" EXACT [BIRNLEX:1597] synonym: "pregeniculate nucleus" EXACT [] synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776] synonym: "ventral part of the lateral geniculate complex" EXACT [BIRNLEX:1597] xref: BAMS:DLG xref: BAMS:LGV xref: BAMS:LGv xref: BAMS:PGn xref: BAMS:VLG xref: BIRNLEX:1597 xref: BM:LGv xref: DHBA:13042 xref: DMBA:16341 xref: EMAPA:35908 xref: FMA:62215 xref: MA:0002776 xref: MBA:178 xref: neuronames:354 {source="BIRNLEX:1597"} xref: UMLS:C0175293 {source="BIRNLEX:1597"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001926 ! lateral geniculate body [Term] id: UBERON:0002518 name: otolith organ namespace: uberon def: "The crystalline particles composed of calcium carbonate and a protein which adhere to the gelatinous membrane of the maculae of the utricle and saccule (otolithic membrane)." [ISBN:0-683-40008-8, MGI:llw2, MP:0002894] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "otolith organs" RELATED [ZFA:0000559] synonym: "saccule and utricle" RELATED [MESH:A09.246.631.909.625] synonym: "utricle and saccule" RELATED [MESH:A09.246.631.909.625] xref: EFO:0003539 xref: GAID:883 xref: MA:0002841 xref: MESH:D012444 xref: TAO:0000559 xref: VHOG:0001676 xref: Wikipedia:Otolith_organ xref: ZFA:0000559 is_a: UBERON:0006585 ! vestibular organ property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg" xsd:anyURI property_value: IAO:0000116 "Representation of utricle, sacule and otoliths in correspondence to other ontologies may require review. In EHDAA2, saccule and utricle are epithelia" xsd:string property_value: UBPROP:0000003 "In fishes, as in other vertebrates, the vestibular end-organs are divided into a gravity receptor system, with three subdivisions and an angular acceleration receptor system. The gravity receptor system on each side consists of utricular, saccular, and lagenar maculae, each covered by an otolith (reference 1); (...)considerations have led to our rethinking issues related to the origin of several aspects of vertebrate hearing, and to the view that many basic auditory functions evolved very early in vertebrate history, and that the functions observed in more `advanced' vertebrates, such as birds and mammals, are frequently modifications of themes first encountered in fishes, and perhaps even more ancestral animals (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001676", ontology="VHOG", source="PMID:11581521 Moorman SJ, Development of sensory systems in zebrafish (Danio rerio). ILAR Journal (2001), DOI:10.1016/S0378-5955(00)00168-4 Fay RR, Popper AN, Evolution of hearing in vertebrates: the inner ears and processing. Hearing research (2000)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002519 name: otolithic part of statoconial membrane namespace: uberon def: "The layer of the statoconial membrane that is composed of otoliths." [PMID:2482728] subset: pheno_slim subset: uberon_slim synonym: "membrana statoconiorum" BROAD OMO:0003011 [FMA:75573, FMA:TA] synonym: "otolith layer of statoconial membrane" EXACT [FMA:75573] synonym: "otolithic membrane" BROAD [MA:0002842] xref: FMA:75573 xref: GAID:884 xref: MA:0002842 xref: MESH:D010037 xref: SCTID:362571006 xref: Wikipedia:Otolithic_membrane relationship: part_of UBERON:0016567 ! statoconial membrane [Term] id: UBERON:0002536 name: arthropod sensillum namespace: uberon def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]." [FBbt:00007152, Wikipedia:Sensillum] subset: efo_slim subset: uberon_slim synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] xref: BTO:0001237 xref: EFO:0000939 xref: FBbt:00007152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000933 xref: MAT:0000163 xref: MIAA:0000163 xref: TGMA:0000540 xref: Wikipedia:Sensillum relationship: part_of UBERON:0001016 ! nervous system property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0002549 name: ventral trigeminal tract namespace: uberon def: "The Anterior trigeminothalamic tract (or ventral trigeminothalamic tract) serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons ." [Wikipedia:Anterior_trigeminothalamic_tract] subset: uberon_slim synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506] synonym: "tractus trigeminalis ventralis" RELATED OMO:0003011 [NeuroNames:613] synonym: "tractus trigeminothalamicus anterior" EXACT OMO:0003011 [FMA:72506, FMA:TA] synonym: "tractus trigeminothalamicus anterior" RELATED OMO:0003011 [Wikipedia:Anterior_trigeminothalamic_tract] synonym: "trigeminal lemniscus-2" EXACT [FMA:72506] synonym: "ventral crossed tract" EXACT [FMA:72506] synonym: "ventral secondary ascending tract of V" EXACT [] synonym: "ventral secondary ascending tract of V" RELATED [NeuroNames:613] synonym: "ventral trigeminal pathway" EXACT [FMA:72506] synonym: "ventral trigeminal tract" RELATED [Wikipedia:Anterior_trigeminothalamic_tract] synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506] synonym: "ventral trigeminothalamic tract" RELATED [Wikipedia:Anterior_trigeminothalamic_tract] xref: BAMS:v5 xref: BIRNLEX:1001 xref: DHBA:12803 xref: FMA:72506 xref: neuronames:613 {source="BIRNLEX:1001"} xref: UMLS:C0175460 {source="BIRNLEX:1001"} xref: Wikipedia:Anterior_trigeminal_tract is_a: UBERON:0004171 ! trigeminothalamic tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002550 name: anterior hypothalamic region namespace: uberon synonym: "AHR" BROAD OMO:0003000 [BIRNLEX:1005, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic area" EXACT [DHBA:266441551] synonym: "chiasmal zone" EXACT [FMA:62027] synonym: "preoptic division" RELATED [NeuroNames:376] xref: BAMS:AHR xref: BIRNLEX:1005 xref: DHBA:266441551 xref: FMA:62027 xref: HBA:12902 xref: HBA:4570 xref: MESH:D007032 xref: neuronames:2381 xref: neuronames:376 {source="BIRNLEX:1005"} xref: UMLS:C0020653 {source="BIRNLEX:1005"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002551 name: interstitial nucleus of Cajal namespace: uberon def: "The largest and most prominent of the cell groups of the medial longitudinal fasciculus." [http://orcid.org/0000-0002-6601-2165] synonym: "ICjl" BROAD OMO:0003000 [BIRNLEX:1008, NIFSTD:NeuroNames_abbrevSource] synonym: "interstitial nucleus" BROAD [FMA:72432] synonym: "interstitial nucleus of Cajal" RELATED [BAMS:INC] synonym: "interstitial nucleus of medial longitudinal fasciculus" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus (Crosby)" EXACT [] synonym: "interstitial nucleus of the medial longitudinal fascicle (Boyce 1895)" RELATED [NeuroNames:515] synonym: "interstitial nucleus of the medial longitudinal fasciculus" RELATED [BAMS:IMLF] synonym: "NIC" EXACT OMO:0003000 [] synonym: "nucleus interstitialis" EXACT OMO:0003011 [FMA:72432, FMA:TA] synonym: "nucleus interstitialis Cajal" RELATED OMO:0003011 [NeuroNames:515] synonym: "nucleus of the posterior commissure (Kvlliker)" RELATED [NeuroNames:515] xref: BAMS:ICA xref: BAMS:ICjl xref: BAMS:IMLF xref: BAMS:INC xref: BAMS:InC xref: BIRNLEX:1008 xref: BM:MB-ICA xref: DHBA:12278 xref: FMA:72432 xref: HBA:9015 xref: MBA:67 xref: neuronames:515 {source="BIRNLEX:1008"} xref: SCTID:369251002 xref: UMLS:C0228418 {source="BIRNLEX:1008"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum property_value: RO:0002171 UBERON:0002044 {source="ABA"} [Term] id: UBERON:0002552 name: vestibulocerebellar tract namespace: uberon def: "White matter tract containing axons arising in the vestibular ganglion primarily projecting to the ipsilateral cerebellum via the inferior cerebellar peduncle (Heimer, L. The Human Brain, 2nd ed., 1995, pg 370)." [BIRNLEX:1009] subset: uberon_slim synonym: "tractus vestibulocerebelli" RELATED OMO:0003011 [NeuroNames:615] synonym: "vestibulocerebellar fibers" EXACT [FMA:72508] xref: BAMS:vcb xref: BIRNLEX:1009 xref: DHBA:12754 xref: FMA:72508 xref: neuronames:615 {source="BIRNLEX:1009"} xref: UMLS:C0175462 {source="BIRNLEX:1009"} xref: Wikipedia:Vestibulocerebellar_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0002555 name: intermediate hypothalamic region namespace: uberon def: "The portion of the hypothalamus located generally internal to the region of the infundibulum." [http://medical-dictionary.thefreedictionary.com] comment: ) synonym: "area hypothalamica intermedia" EXACT OMO:0003011 [FMA:62028, FMA:TA] synonym: "IHR" BROAD OMO:0003000 [BIRNLEX:1015, NIFSTD:NeuroNames_abbrevSource] synonym: "intermediate hypothalamic area" EXACT [FMA:62028] synonym: "intermediate hypothalamus" RELATED [TAO:0006000] synonym: "medial hypothalamus" RELATED [MESH:A08.186.211.730.385.357.352] synonym: "middle hypothalamus" RELATED [MESH:A08.186.211.730.385.357.352] synonym: "regio hypothalamica intermedia" RELATED OMO:0003011 [NeuroNames:392] xref: BAMS:IHR xref: BIRNLEX:1015 xref: FMA:62028 xref: MESH:D007033 xref: neuronames:392 {source="BIRNLEX:1015"} xref: TAO:0006000 xref: UMLS:C0020669 {source="BIRNLEX:1015"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001898 ! hypothalamus property_value: IAO:0000232 "See notes for pars intermedia of adenohypophysis." xsd:string property_value: UBPROP:0000001 "Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0006000", ontology="TAO", source="ZFIN:ZDB-PUB-001018-1", source="ZFIN:ZDB-PUB-020730-6", source="ZFIN:ZDB-PUB-081114-19"} property_value: UBPROP:0000008 "In humans it contains the following nuclei: dorsal nucleus [TA] (nucleus dorsalis hypothalami [TA]), parts of the dorsomedial nucleus [TA] (nucleus dorsomedialis [TA]), arcuate nucleus [TA] (nucleus arcuatus [TA]), posterior periventricular nucleus [TA] (nucleus periventricularis posterior [TA]), retrochiasmatic area [TA] (area retrochiasmatica [TA]), lateral tuberal nuclei [TA] (nuclei tuberales laterales [TA]), and ventromedial nucleus [TA] (nucleus ventromedialis hypothalami" xsd:string {source="TA"} [Term] id: UBERON:0002556 name: corticotectal tract namespace: uberon synonym: "cortico-tectal tract" RELATED [NeuroNames:485] synonym: "corticotectal fibers" EXACT [FMA:72419] synonym: "corticotectal fibres" EXACT [FMA:72419] synonym: "fibrae corticotectales" EXACT OMO:0003011 [FMA:72419, FMA:TA] synonym: "tractus corticotectalis" RELATED OMO:0003011 [NeuroNames:485] xref: BAMS:cte xref: BAMS:ctt xref: BIRNLEX:1016 xref: BM:CTT xref: DHBA:12050 xref: FMA:72419 xref: MBA:1036 xref: neuronames:485 {source="BIRNLEX:1016"} xref: UMLS:C0262216 {source="BIRNLEX:1016"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0002314 {source="NIFSTD"} ! midbrain tectum [Term] id: UBERON:0002557 name: linear nucleus namespace: uberon comment: The mesocorticolimbic dopamine (DA) system plays important roles in reward, motivation, learning, memory, and movement. This system arises from the A10 region, comprising the ventral tegmental area and three adjacent midline nuclei (caudal linear nucleus, interfascicular nucleus, and rostral linear nucleus of the raphe)[PMID:21653852] synonym: "Li" BROAD OMO:0003000 [BIRNLEX:1018, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus linearis" RELATED OMO:0003011 [NeuroNames:519] synonym: "rostral and caudal linear nuclei of the raphe" RELATED [NeuroNames:519] xref: BIRNLEX:1018 xref: DHBA:12230 xref: FMA:72436 xref: neuronames:519 {source="BIRNLEX:1018"} xref: UMLS:C0175404 {source="BIRNLEX:1018"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum [Term] id: UBERON:0002559 name: medullary reticular formation namespace: uberon def: "The reticular formation is a series of brain nuclei located in the medulla oblongata." [GO:0021723] subset: vertebrate_core synonym: "bulb reticular formation" EXACT [OBOL:automatic] synonym: "bulbar reticular formation" EXACT [FMA:72241] synonym: "formatio reticularis myelencephali" RELATED OMO:0003011 [NeuroNames:725] synonym: "medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus" EXACT [MA:0001049] synonym: "metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "reticular formation" BROAD [ZFA:0000421] synonym: "reticular formation of bulb" EXACT [OBOL:automatic] synonym: "reticular formation of medulla" EXACT [FMA:72241] synonym: "reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation" EXACT [GO:0021723] xref: BAMS:MDRN xref: BAMS:MeRF xref: BAMS:RET-MO xref: BIRNLEX:1020 xref: BM:Me-MeRF xref: DHBA:12616 xref: EMAPA:35556 xref: FMA:72241 xref: GAID:588 xref: HBA:9587 xref: MA:0001049 xref: MBA:395 xref: neuronames:725 {source="BIRNLEX:1020"} xref: SCTID:369059009 xref: TAO:0000421 xref: UMLS:C0228520 {source="BIRNLEX:1020"} xref: ZFA:0000421 is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0002275 ! reticular formation property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} property_value: UBPROP:0000012 "ZFA:0000421 is part of the the medulla oblongata, so it is placed here, rather than with the generic term" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0002560 name: temporal operculum namespace: uberon def: "Part of temporal lobe overlaying the insular cortex." [BIRNLEX:1025] synonym: "facies supratemporalis" EXACT [FMA:74891] synonym: "operculum temporale" RELATED OMO:0003011 [Wikipedia:Operculum_(brain)] xref: BAMS:TOp xref: BAMS:top xref: BIRNLEX:1025 xref: FMA:74891 xref: neuronames:127 {source="BIRNLEX:1025"} xref: SCTID:369222001 xref: UMLS:C0149551 {source="BIRNLEX:1025"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain [Term] id: UBERON:0002561 name: lumen of central nervous system namespace: uberon def: "The cavity that is enclosed by the central nervous system. In vertebrates this is the cavity that includes as parts ventricular cavities and the central canal of the spinal cord that develops from the lumen of the neura tube." [https://orcid.org/0000-0002-6601-2165] synonym: "cavity of neuraxis" EXACT [FMA:75007] synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007] synonym: "neuraxis cavity" EXACT [FMA:75007] synonym: "neuraxis lumen" EXACT [] xref: BIRNLEX:1029 xref: FMA:75007 relationship: part_of UBERON:0001017 ! central nervous system property_value: RO:0002175 NCBITaxon:569425 {source="DOI:10.1186/s12983-014-0089-2"} [Term] id: UBERON:0002562 name: superior frontal sulcus namespace: uberon def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_sulcus] subset: uberon_slim synonym: "SFRS" BROAD OMO:0003000 [BIRNLEX:1030, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus f1" EXACT [FMA:83755] synonym: "sulcus frontalis primus" EXACT [BIRNLEX:1030] synonym: "sulcus frontalis superior" EXACT [BIRNLEX:1030] synonym: "sulcus frontalis superior" RELATED OMO:0003011 [Wikipedia:Superior_frontal_sulcus] synonym: "superior frontal fissure" EXACT [FMA:83755] xref: BAMS:sfrs xref: BAMS:sfs xref: BIRNLEX:1030 xref: DHBA:10639 xref: FMA:83755 xref: HBA:9356 xref: NCIT:C33676 xref: neuronames:61 {source="BIRNLEX:1030"} xref: SCTID:279342009 xref: UMLS:C0228198 {source="BIRNLEX:1030", source="ncithesaurus:Superior_Frontal_Sulcus"} xref: Wikipedia:Superior_frontal_sulcus is_a: UBERON:0013118 ! sulcus of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray726_Superior_frontal_sulcus.svg" xsd:anyURI [Term] id: UBERON:0002563 name: central nucleus of inferior colliculus namespace: uberon synonym: "central cortex of the inferior colliculus" RELATED [BAMS:CIC] synonym: "central nucleus of the inferior colliculus" RELATED [NeuroNames:479] synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413] synonym: "inferior colliculus central nucleus" RELATED [BAMS:ICc] synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413] synonym: "nucleus centralis (colliculi inferioris)" RELATED OMO:0003011 [NeuroNames:479] synonym: "nucleus centralis colliculi inferioris" EXACT OMO:0003011 [FMA:72413, FMA:TA] synonym: "nucleus of inferior colliculus (Crosby)" EXACT [] xref: BAMS:CIC xref: BAMS:ICC xref: BIRNLEX:1035 xref: BM:MB-Tec-ICC xref: DHBA:12309 xref: DMBA:16698 xref: FMA:72413 xref: HBA:9104 xref: MBA:811 xref: neuronames:479 {source="BIRNLEX:1035"} xref: UMLS:C0175371 {source="BIRNLEX:1035"} is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001946 ! inferior colliculus property_value: RO:0002171 UBERON:0002571 {source="ABA"} [Term] id: UBERON:0002564 name: lateral orbital gyrus namespace: uberon subset: human_reference_atlas synonym: "gyrus orbitalis lateralis" RELATED OMO:0003011 [NeuroNames:92] synonym: "gyrus orbitalis longitudinalis externus" RELATED OMO:0003011 [NeuroNames:92] xref: BAMS:LOrG xref: BIRNLEX:1036 xref: DHBA:12125 xref: FMA:62418 xref: HBA:4059 xref: neuronames:92 {source="BIRNLEX:1036"} xref: SCTID:279195001 xref: UMLS:C0262268 {source="BIRNLEX:1036"} is_a: UBERON:0007193 ! orbital gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002565 name: olivary pretectal nucleus namespace: uberon def: "Small distinct nucleus in the pretectum of mammals involved in the pupillary light reflect. In rats, it is an olive shaped (anterior) nucleus lying ventral to the brachium of the superior colliculus (Paxinos, The rat nervous system, 2nd ed, 1995, pg. 862). Physiologically, it is identified by neurons sensitive to luminance changes." [BIRNLEX:1037] subset: pheno_slim subset: uberon_slim synonym: "anterior pretectal nucleus" RELATED [FMA:72405] synonym: "nucleus olivaris colliculi superioris (Fuse)" RELATED OMO:0003011 [NeuroNames:472] synonym: "nucleus olivaris corporis quadrigemini anterioris" RELATED OMO:0003011 [NeuroNames:472] synonym: "nucleus olivaris mesencephali" RELATED OMO:0003011 [NeuroNames:472] synonym: "nucleus olivaris pretectalis of Fuse" RELATED OMO:0003011 [NeuroNames:472] synonym: "nucleus praetectalis anterior" RELATED OMO:0003011 [NeuroNames:472] synonym: "nucleus praetectalis olivaris" EXACT OMO:0003011 [ISBN:0471888893] synonym: "nucleus pretectalis anterior" RELATED OMO:0003011 [FMA:72405, FMA:TA] synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405] synonym: "pretectal olivary nucleus" EXACT [FMA:72405] xref: BAMS:APN xref: BAMS:APT xref: BAMS:OP xref: BAMS:OPT xref: BAMS:OPt xref: BIRNLEX:1037 xref: BM:MB-Tec-OPT xref: DHBA:12186 xref: DMBA:16589 xref: EMAPA:37921 {source="MA:th"} xref: FMA:72405 xref: HBA:9086 xref: MBA:706 xref: neuronames:472 {source="BIRNLEX:1037"} xref: UMLS:C0175359 {source="BIRNLEX:1037"} xref: Wikipedia:Olivary_pretectal_nucleus is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0001944 ! pretectal region property_value: IAO:0000116 "B&H states this present in urodeles; modify definition" xsd:string property_value: RO:0002171 UBERON:0002711 {source="ABA"} property_value: RO:0002171 UBERON:0002996 {source="ABA"} property_value: RO:0002171 UBERON:0006848 {source="ABA"} property_value: RO:0002175 NCBITaxon:8293 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:9347 {source="ISBN:0471888893"} [Term] id: UBERON:0002566 name: superior precentral sulcus namespace: uberon synonym: "precentral dimple" EXACT [FMA:83763] synonym: "SPRS" BROAD OMO:0003000 [BIRNLEX:1038, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus praecentralis superior" EXACT [BIRNLEX:1038] synonym: "sulcus precentralis superior" EXACT [BIRNLEX:1038] synonym: "superior part of precentral fissure" EXACT [FMA:83763] synonym: "superior precentral dimple" RELATED [NeuroNames:71] xref: BAMS:sprs xref: BIRNLEX:1038 xref: FMA:83763 xref: HBA:265505362 xref: neuronames:71 {source="BIRNLEX:1038"} xref: UMLS:C0262338 {source="BIRNLEX:1038"} is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0014473 ! precentral fissure of cerebellum property_value: IAO:0000116 "todo - compare with precentral sulcus" xsd:string [Term] id: UBERON:0002567 name: basal part of pons namespace: uberon def: "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface." [FMA:72244] subset: pheno_slim synonym: "basal part of the pons" RELATED [NeuroNames:616] synonym: "basal portion of pons" EXACT [FMA:72244] synonym: "base of pons" EXACT [FMA:72244] synonym: "basilar part of pons" EXACT [FMA:72244] synonym: "basilar pons" RELATED [NeuroNames:616] synonym: "basis pontis" RELATED OMO:0003011 [NeuroNames:616] synonym: "pars anterior pontis" RELATED OMO:0003011 [NeuroNames:616] synonym: "pars basilaris pontis" EXACT OMO:0003011 [FMA:72244, FMA:TA] synonym: "pars ventralis pontis" RELATED OMO:0003011 [NeuroNames:616] synonym: "pons proper" EXACT [FMA:72244] synonym: "ventral pons" EXACT [] synonym: "ventral portion of pons" EXACT [FMA:72244] xref: BAMS:Bpons xref: BIRNLEX:1043 xref: DHBA:12405 xref: FMA:72244 xref: HBA:9132 xref: neuronames:616 {source="BIRNLEX:1043"} xref: SCTID:361541001 xref: UMLS:C0228427 {source="BIRNLEX:1043"} xref: Wikipedia:Basilar_part_of_pons is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002568 name: amiculum of dentate nucleus namespace: uberon synonym: "amiculum nuclei dentati" RELATED OMO:0003011 [NeuroNames:686] synonym: "amiculum of the dentate nucleus" RELATED [NeuroNames:686] synonym: "dentate nuclear amiculum" EXACT [FMA:72546] xref: BAMS:amdt xref: BIRNLEX:1044 xref: FMA:72546 xref: neuronames:686 {source="BIRNLEX:1044"} xref: UMLS:C0175487 {source="BIRNLEX:1044"} is_a: UBERON:0019291 ! white matter of metencephalon is_a: UBERON:0035939 {source="FMA"} ! amiculum relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002569 name: transverse temporal sulcus namespace: uberon synonym: "sulci temporales transversi" RELATED OMO:0003011 [NeuroNames:128] synonym: "transverse temporal sulci" RELATED OMO:0003004 [] xref: BAMS:tts xref: BIRNLEX:1045 xref: DHBA:146034852 xref: FMA:83782 xref: neuronames:128 {source="BIRNLEX:1045"} xref: SCTID:42387003 xref: UMLS:C0228239 {source="BIRNLEX:1045"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014687 ! temporal sulcus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002570 name: medial orbital gyrus namespace: uberon subset: human_reference_atlas synonym: "gyrus orbitalis longitudinalis internus" RELATED OMO:0003011 [NeuroNames:93] synonym: "gyrus orbitalis medialis" RELATED OMO:0003011 [NeuroNames:93] synonym: "gyrus orbitalis medius" RELATED OMO:0003011 [NeuroNames:93] xref: BAMS:MOrG xref: BIRNLEX:1046 xref: DHBA:12122 xref: FMA:62419 xref: HBA:4050 xref: neuronames:93 {source="BIRNLEX:1046"} xref: SCTID:279194002 xref: UMLS:C0175179 {source="BIRNLEX:1046"} is_a: UBERON:0007193 ! orbital gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002571 name: external nucleus of inferior colliculus namespace: uberon synonym: "external cortex of the inferior colliculus" RELATED [NeuroNames:478] synonym: "external nucleus of the inferior colliculus" RELATED [NeuroNames:478] synonym: "inferior colliculus, external nucleus" RELATED [NeuroNames:478] synonym: "nucleus externus (colliculi inferioris)" RELATED OMO:0003011 [NeuroNames:478] synonym: "nucleus externus colliculi inferioris" EXACT OMO:0003011 [FMA:72412, FMA:TA] synonym: "nucleus lateralis colliculi inferioris" EXACT OMO:0003011 [FMA:72412, FMA:TA] xref: BAMS:EIC xref: BAMS:ICe xref: BIRNLEX:1047 xref: BM:MB-Tec-ICX xref: DHBA:12308 xref: FMA:72412 xref: HBA:9105 xref: MBA:828 xref: neuronames:478 {source="BIRNLEX:1047"} xref: UMLS:C0175370 {source="BIRNLEX:1047"} is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001946 ! inferior colliculus property_value: RO:0002171 UBERON:0002563 {source="ABA"} [Term] id: UBERON:0002572 name: principal pretectal nucleus namespace: uberon synonym: "nucleus pretectalis principalis" RELATED OMO:0003011 [NeuroNames:469] xref: BAMS:PPt xref: BIRNLEX:1048 xref: DMBA:16586 xref: FMA:72402 xref: HBA:9089 xref: neuronames:469 {source="BIRNLEX:1048"} xref: UMLS:C0175355 {source="BIRNLEX:1048"} is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002573 name: pontine reticular formation namespace: uberon def: "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]." [Wikipedia:Pontine_reticular_formation] subset: uberon_slim synonym: "formatio reticularis pontis" RELATED OMO:0003011 [NeuroNames:561] synonym: "pons of varolius reticular formation" EXACT [OBOL:automatic] synonym: "pons reticular formation" EXACT [OBOL:automatic] synonym: "pontine reticular nucleus" EXACT [ABA:PRNr] synonym: "pontine reticular nucleus rostral part" RELATED [BAMS:PRNr] synonym: "reticular formation of pons" EXACT [FMA:68876] synonym: "reticular formation of pons of varolius" EXACT [OBOL:automatic] xref: BAMS:PRF xref: BAMS:PRN xref: BAMS:PRNr xref: BAMS:RET-PONS xref: BIRNLEX:1050 xref: BM:Pons-PRF xref: DHBA:12480 xref: EMAPA:35693 xref: FMA:68876 xref: HBA:9161 xref: neuronames:561 {source="BIRNLEX:1050"} xref: SCTID:362403007 xref: UMLS:C0228428 {source="BIRNLEX:1050"} xref: Wikipedia:Pontine_reticular_formation is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002275 ! reticular formation relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png" xsd:anyURI [Term] id: UBERON:0002575 name: posterior orbital gyrus namespace: uberon xref: BAMS:POrG xref: BIRNLEX:1054 xref: FMA:80184 xref: HBA:4056 xref: neuronames:6 xref: OldNeuroNames:-1761421113 {source="BIRNLEX:1054"} xref: SCTID:279197009 xref: UMLS:C0458323 {source="BIRNLEX:1054"} is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002576 name: temporal pole namespace: uberon def: "Anterior component of the temporal lobe (rostral boundary) extends caudally to the entorhinal cortex. The medial and lateral boundaries are the medial aspect of the temporal lobe and the superior or inferior temporal sulci, respectively (Christine Fennema-Notestine)." [BIRNLEX:1055] subset: human_reference_atlas subset: uberon_slim synonym: "polus temporalis" EXACT OMO:0003011 [NeuroNames:126] synonym: "temporal pole, cerebral cortex" RELATED [NeuroNames:126] synonym: "temporopolar cortex" RELATED [BIRNLEX:1055] xref: BAMS:TmP xref: BAMS:tmp xref: BIRNLEX:1055 xref: DHBA:12146 xref: FMA:74890 xref: HBA:4174 xref: neuronames:126 {source="BIRNLEX:1055"} xref: SCTID:314155002 xref: Wikipedia:Temporal_pole is_a: UBERON:0009899 ! pole of cerebral hemisphere relationship: part_of UBERON:0001871 ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002577 name: pericentral nucleus of inferior colliculus namespace: uberon synonym: "cortex of inferior colliculus" EXACT [FMA:72411] synonym: "dorsal cortex of the inferior colliculus" RELATED [NeuroNames:477] synonym: "inferior colliculus, dorsal nucleus" RELATED [NeuroNames:477] synonym: "nucleus pericentralis (colliculi inferioris)" RELATED OMO:0003011 [NeuroNames:477] synonym: "nucleus pericentralis colliculi inferioris" EXACT OMO:0003011 [FMA:72411, FMA:TA] synonym: "pericentral nucleus of the inferior colliculus" RELATED [NeuroNames:477] xref: BAMS:ICP xref: BAMS:PCIC xref: BIRNLEX:1056 xref: BM:MB-Tec-ICP xref: DHBA:12306 xref: FMA:72411 xref: HBA:9106 xref: MBA:820 xref: neuronames:477 {source="BIRNLEX:1056"} xref: UMLS:C0175369 {source="BIRNLEX:1056"} is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002578 name: sublentiform nucleus namespace: uberon synonym: "nucleus sublentiformis" EXACT OMO:0003011 [NeuroNames:471] xref: BAMS:SLn xref: BIRNLEX:1057 {notes="retired in NIFSTD present in neurlex"} xref: FMA:72404 xref: HBA:9092 xref: neuronames:471 is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0001944 {source="FMA"} ! pretectal region [Term] id: UBERON:0002580 name: brachium of superior colliculus namespace: uberon def: "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina." [BIRNLEX:1065] subset: uberon_slim synonym: "brachium colliculi cranialis" RELATED OMO:0003011 [NeuroNames:474] synonym: "brachium colliculi rostralis" RELATED OMO:0003011 [NeuroNames:474] synonym: "brachium colliculi superioris" RELATED OMO:0003011 [Wikipedia:Brachium_of_superior_colliculus] synonym: "brachium of the superior colliculus" RELATED [NeuroNames:474] synonym: "brachium quadrigeminum superius" RELATED OMO:0003011 [NeuroNames:474] synonym: "superior brachium" EXACT [FMA:72417] synonym: "superior collicular brachium" EXACT [FMA:72417] synonym: "superior colliculus brachium" EXACT [FMA:72417] synonym: "superior quadrigeminal brachium" EXACT [FMA:72417] xref: BAMS:bsc xref: BIRNLEX:1065 xref: BM:MB-BSC xref: DHBA:12328 xref: FMA:72417 xref: HBA:265505398 xref: MBA:916 xref: neuronames:474 {source="BIRNLEX:1065"} xref: UMLS:C0175368 {source="BIRNLEX:1065"} xref: Wikipedia:Brachium_of_superior_colliculus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0006786 ! white matter of superior colliculus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG" xsd:anyURI [Term] id: UBERON:0002581 name: postcentral gyrus namespace: uberon def: "Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1070] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "gyrus centralis posterior" RELATED OMO:0003011 [NeuroNames:105] synonym: "gyrus postcentralis" EXACT OMO:0003011 [NeuroNames:105] synonym: "post central gyrus" RELATED [NeuroNames:105] synonym: "postcentral convolution" EXACT [FMA:61896] synonym: "posterior central gyrus" EXACT [FMA:61896] synonym: "postrolandic gyrus" EXACT [FMA:61896] synonym: "somatosensory cortex" RELATED [Wikipedia:Postcentral_gyrus] xref: BAMS:PoG xref: BIRNLEX:1070 xref: BTO:0004354 xref: DHBA:12132 xref: EFO:0001383 xref: FMA:61896 xref: HBA:4085 xref: NCIT:C33346 xref: neuronames:105 {source="BIRNLEX:1070"} xref: SCTID:279167001 xref: UMLS:C0152302 {source="BIRNLEX:1070", source="ncithesaurus:Postcentral_Gyrus"} xref: Wikipedia:Postcentral_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002582 name: anterior calcarine sulcus namespace: uberon synonym: "ACCS" BROAD OMO:0003000 [BIRNLEX:1072, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior calcarine fissure" EXACT [FMA:83750] synonym: "sulcus calcarinus anterior" EXACT [BIRNLEX:1072] xref: BAMS:accs xref: BAMS:acs xref: BIRNLEX:1072 xref: FMA:83750 xref: neuronames:45 {source="BIRNLEX:1072"} xref: UMLS:C0262187 {source="BIRNLEX:1072"} is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002583 name: commissure of superior colliculus namespace: uberon def: "A commissure that is part of a superior colliculus [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "anterior colliculus commissure" EXACT [OBOL:automatic] synonym: "anterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] synonym: "commissura colliculi superior" RELATED OMO:0003011 [NeuroNames:475] synonym: "commissura colliculi superioris" RELATED OMO:0003011 [NeuroNames:475] synonym: "commissura colliculorum cranialium" RELATED OMO:0003011 [NeuroNames:475] synonym: "commissura colliculorum rostralium" RELATED OMO:0003011 [NeuroNames:475] synonym: "commissura colliculorum superiorum" RELATED OMO:0003011 [NeuroNames:475] synonym: "commissure of anterior colliculus" EXACT [OBOL:automatic] synonym: "commissure of anterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "commissure of cranial colliculus" EXACT [OBOL:automatic] synonym: "commissure of optic tectum" EXACT [OBOL:automatic] synonym: "commissure of superior colliculi" EXACT [FMA:72418] synonym: "commissure of the superior colliculi" RELATED [BAMS:csc, BAMS:SCC] synonym: "commissure of the superior colliculus" RELATED [NeuroNames:475] synonym: "cranial colliculus commissure" EXACT [OBOL:automatic] synonym: "intertectal commissure" EXACT SENSU [ZFA:0000684] synonym: "optic tectum commissure" EXACT [OBOL:automatic] synonym: "superior colliculus commissure" EXACT [FMA:72418] xref: BAMS:csc xref: BAMS:SCC xref: BIRNLEX:1073 xref: BM:MB-Tec-SC-SCX xref: FMA:72418 xref: MBA:336 xref: neuronames:475 {source="BIRNLEX:1073"} xref: SCTID:369258008 xref: TAO:0000684 xref: UMLS:C0152366 {source="BIRNLEX:1073"} xref: ZFA:0000684 is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0001945 ! superior colliculus relationship: part_of UBERON:0006786 {source="NIFSTD-modified"} ! white matter of superior colliculus [Term] id: UBERON:0002585 name: central tegmental tract of midbrain namespace: uberon synonym: "central tegmental tract of the midbrain" RELATED [NeuroNames:528] synonym: "CTGMB" BROAD OMO:0003000 [BIRNLEX:1081, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus tegmentalis centralis (mesencephali)" RELATED OMO:0003011 [NeuroNames:528] xref: BAMS:ctgmb xref: BIRNLEX:1081 xref: FMA:72456 xref: neuronames:528 {source="BIRNLEX:1081"} xref: SCTID:369243000 xref: UMLS:C0152364 {source="BIRNLEX:1081"} is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0009643 ! central tegmental tract [Term] id: UBERON:0002586 name: calcarine sulcus namespace: uberon def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [Wikipedia:Calcarine_sulcus] subset: uberon_slim synonym: "calcarine fissure" EXACT [FMA:83749] synonym: "CCS" BROAD OMO:0003000 [BIRNLEX:1086, NIFSTD:NeuroNames_abbrevSource] synonym: "fissura calcarina" RELATED OMO:0003011 [NeuroNames:44] synonym: "sulcus calcarinus" EXACT [BIRNLEX:1086] xref: BIRNLEX:1086 xref: BM:Tel-Cx-CAS xref: DHBA:10612 xref: FMA:83749 xref: HBA:9391 xref: NCIT:C32252 xref: neuronames:44 {source="BIRNLEX:1086"} xref: SCTID:279355005 xref: UMLS:C0228224 {source="BIRNLEX:1086", source="ncithesaurus:Calcarine_Sulcus"} xref: Wikipedia:Calcarine_sulcus is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex [Term] id: UBERON:0002587 name: nucleus subceruleus namespace: uberon synonym: "nucleus subcaeruleus" EXACT OMO:0003011 [FMA:72479, FMA:TA] synonym: "nucleus subcoeruleus" RELATED [BAMS:SLC] synonym: "subcaerulean nucleus" EXACT [FMA:72479] synonym: "subceruleus nucleus" EXACT [] synonym: "subcoeruleus nucleus" EXACT [] xref: BAMS:SLC xref: BAMS:SubC xref: BIRNLEX:1088 xref: DHBA:12500 xref: FMA:72479 xref: HBA:9154 xref: MBA:350 xref: neuronames:584 {source="BIRNLEX:1088"} xref: UMLS:C0175441 {source="BIRNLEX:1088"} is_a: UBERON:0002308 ! nucleus of brain property_value: RO:0002171 UBERON:0002047 {source="ABA"} property_value: RO:0002171 UBERON:0002148 {source="ABA"} property_value: RO:0002171 UBERON:0002267 {source="ABA"} property_value: RO:0002171 UBERON:0003004 {source="ABA"} [Term] id: UBERON:0002588 name: decussation of superior cerebellar peduncle namespace: uberon alt_id: UBERON:0003032 def: "Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]." [BIRNLEX:1089, Wikipedia:Decussation_of_superior_cerebellar_peduncle] subset: uberon_slim synonym: "decussatio brachii conjunctivi" RELATED OMO:0003011 [NeuroNames:527] synonym: "decussatio crurorum cerebello-cerebralium" RELATED OMO:0003011 [NeuroNames:527] synonym: "decussatio pedunculorum cerebellarium superiorum" EXACT OMO:0003011 [FMA:72455, FMA:TA] synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455] synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455] synonym: "decussation of the superior cerebellar peduncle" RELATED [NeuroNames:527] synonym: "decussation of the superior cerebellar peduncle (Wernekinck)" RELATED [NeuroNames:527] synonym: "descussation of the scp" RELATED [BAMS:dscp] synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455] synonym: "Wernekink's decussation" EXACT [FMA:72455] xref: BAMS:dscp xref: BAMS:xscp xref: BIRNLEX:1089 xref: BM:BCX xref: DHBA:12337 xref: FMA:72455 xref: HBA:265505482 xref: MBA:812 xref: neuronames:527 {source="BIRNLEX:1089"} xref: SCTID:369252009 xref: UMLS:C0152374 {source="BIRNLEX:1089"} xref: Wikipedia:Decussation_of_superior_cerebellar_peduncle is_a: UBERON:0007418 ! neural decussation relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: part_of UBERON:0002150 ! superior cerebellar peduncle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png" xsd:anyURI [Term] id: UBERON:0002589 name: lateral corticospinal tract namespace: uberon def: "Part of the corticospinal tract located in the spinal cord, formed as 75 to 90% of the corticospinal fibers cross to the opposite side of the brainstem in the pyramidal decussation. This tract descends the length of the spinal cord in the lateral white column (Adapted from Brain Info)." [BIRNLEX:1095] subset: pheno_slim subset: uberon_slim synonym: "corticospinal tract, crossed" EXACT [MBA:1019] synonym: "corticospinal tract, crossed" RELATED [NeuroNames:2954] synonym: "crossed corticospinal tract" RELATED [NeuroNames:2954] synonym: "crossed pyramidal tract" EXACT [] synonym: "fasciculus cerebrospinalis lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_corticospinal_tract] synonym: "lateral corticospinal tract" RELATED [NeuroNames:2954] synonym: "lateral corticospinal tract of the medulla" RELATED [NeuroNames:801] synonym: "lateral pyramidal tract" EXACT [FMA:72635] synonym: "pyramidal tract, crossed" EXACT [BAMS:py] synonym: "tractus corticospinalis (pyramidalis) lateralis" RELATED OMO:0003011 [NeuroNames:801] synonym: "tractus corticospinalis lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_corticospinal_tract] xref: BAMS:lcsp xref: BAMS:py xref: BIRNLEX:1095 xref: DHBA:12759 xref: EMAPA:37888 {source="MA:th"} xref: FMA:72635 xref: MBA:1019 xref: NCIT:C32406 xref: neuronames:801 {source="BIRNLEX:1095"} xref: SCTID:369091005 xref: UMLS:C0152402 {source="BIRNLEX:1095"} xref: Wikipedia:Lateral_corticospinal_tract is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0002707 {source="NIFSTD"} ! corticospinal tract property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI [Term] id: UBERON:0002590 name: prepyriform area namespace: uberon def: "Prepyriform area (or prepiriform cortex) is a portion of the rhinencephalon consisting of paleocortex. Some sources state that it is part of the primary olfactory cortex." [Wikipedia:Prepyriform_area] subset: human_reference_atlas synonym: "(pre-)piriform cortex" EXACT [BIRNLEX:1097] synonym: "area prepiriformis" RELATED OMO:0003011 [NeuroNames:165] synonym: "eupalaeocortex" RELATED OMO:0003011 [NeuroNames:165] synonym: "gyrus olfactorius lateralis" EXACT OMO:0003011 [FMA:62484, FMA:TA] synonym: "lateral olfactory gyrus" EXACT [FMA:62484] synonym: "palaeocortex II" RELATED OMO:0003011 [NeuroNames:165] synonym: "piriform cortex (price)" EXACT [] synonym: "piriform olfactory cortex" EXACT [BIRNLEX:1097] synonym: "prepiriform cortex" EXACT [FMA:62484] synonym: "prepiriform region" RELATED [DHBA:266441677] synonym: "prepyriform cortex" EXACT [FMA:62484] synonym: "pyriform area" EXACT [BIRNLEX:1097] synonym: "regio praepiriformis" RELATED OMO:0003011 [NeuroNames:165] xref: BIRNLEX:1097 xref: BM:Tel-PRP xref: DHBA:13229 xref: DHBA:266441677 xref: FMA:62484 xref: MBA:961 xref: neuronames:165 {source="BIRNLEX:1097"} xref: SCTID:369104008 xref: UMLS:C0228280 {source="BIRNLEX:1097"} xref: Wikipedia:Prepyriform_area is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex property_value: RO:0002171 UBERON:0002266 {source="ABA"} property_value: RO:0002171 UBERON:0002893 {source="ABA"} property_value: RO:0002171 UBERON:0004069 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002591 name: oral part of spinal trigeminal nucleus namespace: uberon synonym: "nucleus oralis tractus spinalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:835] synonym: "nucleus spinalis nervi trigemini, pars oralis" RELATED OMO:0003011 [NeuroNames:835] synonym: "oral part of the spinal trigeminal nucleus" RELATED [NeuroNames:835] synonym: "spinal nucleus of the trigeminal oral part" RELATED [BAMS:SPVO] synonym: "spinal nucleus of the trigeminal, oral part" RELATED [NeuroNames:835] synonym: "spinal trigeminal nucleus oral part" RELATED [BAMS:Sp5O] synonym: "spinal trigeminal nucleus, oral part" RELATED [NeuroNames:835] xref: BAMS:OSp5 xref: BAMS:Sp5O xref: BAMS:SPVO xref: BIRNLEX:1100 xref: FMA:235322 xref: HBA:9679 xref: MBA:445 xref: neuronames:835 {source="BIRNLEX:1100"} xref: UMLS:C0175417 {source="BIRNLEX:1100"} is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve property_value: RO:0002171 UBERON:0002126 {source="ABA"} property_value: RO:0002171 UBERON:0002162 {source="ABA"} property_value: RO:0002171 UBERON:0002610 {source="ABA"} property_value: RO:0002171 UBERON:0002864 {source="ABA"} property_value: RO:0002171 UBERON:0002866 {source="ABA"} property_value: RO:0002171 UBERON:0002873 {source="ABA"} property_value: RO:0002171 UBERON:0007633 {source="ABA"} [Term] id: UBERON:0002592 name: juxtarestiform body namespace: uberon def: "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497)." [BIRNLEX:1101] subset: uberon_slim synonym: "corpus juxtarestiforme" RELATED OMO:0003011 [NeuroNames:779] xref: BAMS:jrb xref: BAMS:jx xref: BIRNLEX:1101 xref: DHBA:12750 xref: FMA:72613 xref: MBA:650 xref: neuronames:779 {source="BIRNLEX:1101"} xref: SCTID:110687007 xref: UMLS:C0152394 {source="BIRNLEX:1101"} xref: Wikipedia:Juxtarestiform_body is_a: UBERON:0014649 ! white matter of medulla oblongata relationship: part_of UBERON:0002163 {source="NIFSTD"} ! inferior cerebellar peduncle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png" xsd:anyURI [Term] id: UBERON:0002593 name: orbital operculum namespace: uberon subset: human_reference_atlas synonym: "frontal core" RELATED [NeuroNames:2394] synonym: "gigantopyramidal area 4" RELATED [NeuroNames:2394] synonym: "operculum orbitale" EXACT OMO:0003011 [FMA:74887, FMA:TA] synonym: "pars orbitalis of frontal operculum (Ono)" EXACT OMO:0003011 [FMA:74887, FMA:TA] synonym: "precentral gigantopyramidal field" RELATED [NeuroNames:2394] xref: BAMS:oro xref: BIRNLEX:1102 xref: DHBA:12128 xref: FMA:74887 xref: neuronames:2394 {source="BIRNLEX:1102"} xref: UMLS:C0694580 {source="BIRNLEX:1102"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002594 name: dentatothalamic tract namespace: uberon def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [Wikipedia:Dentatothalamic_tract] subset: uberon_slim synonym: "dentatothalamic fibers" EXACT [FMA:72462] synonym: "DT" BROAD OMO:0003000 [BIRNLEX:1104, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus dentatothalamicus" RELATED OMO:0003011 [Wikipedia:Dentatothalamic_tract] xref: BAMS:dt xref: BIRNLEX:1104 xref: DHBA:12357 xref: FMA:72462 xref: neuronames:534 {source="BIRNLEX:1104"} xref: UMLS:C0175411 {source="BIRNLEX:1104"} xref: Wikipedia:Dentatothalamic_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002595 name: orbital sulcus namespace: uberon def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus." [Wikipedia:Orbital_sulcus] synonym: "cruciate sulcus of campbell" EXACT [BIRNLEX:1112] synonym: "orbital sulci" EXACT OMO:0003004 [FMA:83770] synonym: "ORBS" BROAD OMO:0003000 [BIRNLEX:1112, NIFSTD:NeuroNames_abbrevSource] synonym: "sulci orbitales" RELATED OMO:0003011 [NeuroNames:79] synonym: "sulci orbitalis" EXACT OMO:0003011 [] synonym: "sulcus orbitalis" EXACT [BIRNLEX:1112] xref: BAMS:orbs xref: BAMS:ors xref: BIRNLEX:1112 xref: BM:Tel-Cx-ORS xref: DHBA:10625 xref: FMA:83770 xref: HBA:9360 xref: NCIT:C33222 xref: neuronames:79 {source="BIRNLEX:1112"} xref: SCTID:314143008 xref: UMLS:C0228206 {source="ncithesaurus:Orbital_Sulcus", source="BIRNLEX:1112"} xref: Wikipedia:Orbital_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0002596 name: ventral posterior nucleus of thalamus namespace: uberon def: "Part of thalamus receiving primary somatic sensory information via the medial lemniscal pathway that projects to the primary somatosensory cortex (adapted from Paxinos, The Rat Nervous System, 2nd Ed, Academic Press, 1995)." [BIRNLEX:1116] subset: uberon_slim synonym: "nuclei ventrales posteriores" RELATED OMO:0003011 [NeuroNames:343] synonym: "nucleus ventrales posteriores" EXACT [BIRNLEX:1116] synonym: "nucleus ventralis posterior" EXACT [BIRNLEX:1116] synonym: "ventral posterior" RELATED [BAMS:VP] synonym: "ventral posterior complex of the thalamus" RELATED [ABA:VP, BAMS:VP] synonym: "ventral posterior nucleus" EXACT [FMA:62187] synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187] synonym: "ventrobasal complex" EXACT [FMA:62187] synonym: "ventrobasal nucleus" EXACT [FMA:62187] synonym: "ventroposterior inferior nucleus" RELATED [BTO:0004374] synonym: "ventroposterior nucleus" RELATED [BTO:0004373] synonym: "ventroposterior nucleus of thalamus" RELATED [BAMS:VP] synonym: "VP" BROAD OMO:0003000 [BIRNLEX:1116, NIFSTD:NeuroNames_abbrevSource] synonym: "VPN" RELATED [BTO:0004373] xref: BAMS:VP xref: BIRNLEX:1116 xref: BM:Die-Th-VPI xref: BTO:0004373 xref: BTO:0004374 xref: DHBA:10423 xref: EMAPA:35912 xref: FMA:62187 xref: MBA:709 xref: neuronames:343 {source="BIRNLEX:1116"} xref: SCTID:279147005 xref: UMLS:C0175276 {source="BIRNLEX:1116"} xref: Wikipedia:Ventral_posterior_nucleus is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI [Term] id: UBERON:0002597 name: principal sensory nucleus of trigeminal nerve namespace: uberon def: "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]." [GO:0021730, Wikipedia:Chief_sensory_nucleus] comment: GO has pontine nucleus as a child of trigeminal sensory nucleus, WP says this is a synonym, but we have a separate class for this - UBERON:0002151 subset: uberon_slim synonym: "chief sensory nucleus" EXACT [FMA:54533] synonym: "chief sensory trigeminal nucleus" RELATED [NeuroNames:560] synonym: "chief trigeminal sensory nucleus" RELATED [NeuroNames:560] synonym: "main sensory nucleus" EXACT [FMA:54533] synonym: "main sensory nucleus of cranial nerve v" EXACT [] synonym: "nucleus pontinus nervi trigeminalis" RELATED OMO:0003011 [NeuroNames:560] synonym: "nucleus pontinus nervi trigemini" RELATED OMO:0003011 [NeuroNames:560] synonym: "nucleus principalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:560] synonym: "nucleus sensibilis superior nervi trigemini" RELATED OMO:0003011 [NeuroNames:560] synonym: "nucleus sensorius principalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:560] synonym: "nucleus sensorius superior nervi trigemini" RELATED OMO:0003011 [NeuroNames:560] synonym: "pontine nucleus" RELATED INCONSISTENT [GO:0021740, Wikipedia:Trigeminal_nuclei] synonym: "pontine nucleus of the trigeminal nerve" RELATED [NeuroNames:560] synonym: "primary nucleus of the trigeminal nerve" RELATED [NeuroNames:560] synonym: "principal sensory nucleus" EXACT [] synonym: "principal sensory nucleus of the trigeminal" RELATED [NeuroNames:560] synonym: "principal sensory nucleus of the trigeminal nerve" RELATED [NeuroNames:560] synonym: "principal sensory nucleus of trigeminal nerve" EXACT [FMA:54533] synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533] synonym: "principal trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533] synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533] synonym: "trigeminal V chief sensory nucleus" EXACT [MA:0002740] synonym: "trigeminal V principal sensory nucleus" EXACT [MA:0002740] xref: BAMS:Pr5 xref: BAMS:PSV xref: BIRNLEX:1120 xref: BM:VP xref: DHBA:12444 xref: EHDAA2:0004628 xref: EMAPA:37773 {source="MA:th"} xref: EV:0100274 xref: FMA:54533 xref: HBA:9207 xref: MA:0002740 xref: MBA:7 xref: NCIT:C33402 xref: neuronames:560 {source="BIRNLEX:1120"} xref: SCTID:369031008 xref: UMLS:C0228701 {source="ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve", source="BIRNLEX:1120"} xref: Wikipedia:Chief_sensory_nucleus is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: RO:0002171 UBERON:0002128 {source="ABA"} property_value: RO:0002171 UBERON:0006840 {source="ABA"} property_value: RO:0002171 UBERON:0007634 {source="ABA"} [Term] id: UBERON:0002598 name: paracentral sulcus namespace: uberon def: "The paracentral sulcus is a sulcus of the brain. It forms the paracentral lobule's anterior border." [Wikipedia:Paracentral_sulcus] synonym: "PCS" BROAD OMO:0003000 [BIRNLEX:1121, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus paracentralis" RELATED OMO:0003011 [NeuroNames:70] synonym: "sulcus subcentralis medialis" EXACT [BIRNLEX:1121] xref: BIRNLEX:1121 xref: DHBA:10633 xref: FMA:83762 xref: HBA:9365 xref: neuronames:70 {source="BIRNLEX:1121"} xref: SCTID:369228002 xref: UMLS:C0228204 {source="BIRNLEX:1121"} xref: Wikipedia:Paracentral_sulcus is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002599 name: medial olfactory gyrus namespace: uberon synonym: "gyrus medius olfactorius" RELATED OMO:0003011 [NeuroNames:281] synonym: "gyrus olfactorius medialis" RELATED OMO:0003011 [NeuroNames:281] xref: BAMS:MOG xref: BIRNLEX:1127 xref: FMA:74509 xref: neuronames:281 {source="BIRNLEX:1127"} xref: SCTID:369103002 xref: UMLS:C0152331 {source="BIRNLEX:1127"} is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002600 name: limbic lobe namespace: uberon def: "Part of cerebral hemisphere located on the medial surface, forming a ring around the brain stem." [BIRNLEX:1128] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "fornicate convolution" RELATED [NeuroNames:834] synonym: "fornicate gyrus" EXACT [FMA:72719] synonym: "fornicate lobe" RELATED [NeuroNames:834] synonym: "grande lobe limbique of Broca" EXACT [] synonym: "gyrus fornicatus" RELATED OMO:0003011 [NeuroNames:834] synonym: "limbic lobe (carpenter)" EXACT [] synonym: "lobus limbicus" RELATED OMO:0003011 [Wikipedia:Limbic_lobe] xref: BAMS:Limbic_lobe xref: BAMS:LL xref: BIRNLEX:1128 xref: CALOHA:TS-2061 xref: DHBA:12155 xref: FMA:72719 xref: HBA:4219 xref: MESH:D065726 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:834 {source="BIRNLEX:1128"} xref: SCTID:279215006 xref: UMLS:C0458337 {source="BIRNLEX:1128"} xref: Wikipedia:Limbic_lobe is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Human_brain_inferior-medial_view_description.JPG" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002601 name: fasciolar gyrus namespace: uberon def: "A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]." [BTO:0002497, http://www.biology-online.org/dictionary/Fasciolar_gyrus] synonym: "fasciola cinerea" RELATED [BTO:0002497, neuronames:176] synonym: "fasciola cinerea (Reil, Arnold)" RELATED [NeuroNames:176] synonym: "fasciola cinereum" RELATED [NeuroNames:176] synonym: "FC" RELATED OMO:0003000 [NeuroNames:176] synonym: "gyrus fasciolaris" RELATED [BTO:0002497, NeuroNames:176] synonym: "gyrus retrosplenialis hippocampi" RELATED OMO:0003011 [NeuroNames:176] synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921] synonym: "splenial gyrus" RELATED [FMA:61921] xref: BAMS:FAG xref: BAMS:FG xref: BIRNLEX:1129 xref: BTO:0002497 xref: DHBA:12175 xref: DMBA:112892265 xref: EMAPA:35339 xref: FMA:61921 xref: MA:0003127 xref: MBA:982 xref: neuronames:176 {source="BIRNLEX:1129"} xref: SCTID:279210001 xref: UMLS:C0152332 {source="BIRNLEX:1129"} relationship: part_of UBERON:0002600 {source="NIFSTD"} ! limbic lobe property_value: IAO:0000116 "TODO - existing definitions, synonyms and relationships in existing AOs seem contradictory; to be resolved. We take the dentate gyrus relationship from BTO, and it is also implied by the FMA synonym. However, FMA says archiortex (embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus) and NIF says limbic lobe (which is more general than hippocampus). ABA xref made on basis of BTO related synonym" xsd:string property_value: RO:0002171 UBERON:0001885 {source="ABA"} property_value: RO:0002171 UBERON:0001954 {source="ABA"} [Term] id: UBERON:0002602 name: emboliform nucleus namespace: uberon alt_id: UBERON:0004071 def: "The small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle." [ISBN:0-683-40008-8, MP:0009981] subset: pheno_slim subset: uberon_slim synonym: "anterior interposed nucleus" EXACT [FMA:72538] synonym: "anterior interpositus nucleus" EXACT [FMA:72538] synonym: "cerebellar emboliform nucleus" EXACT [] synonym: "cerebellum emboliform nucleus" EXACT [MP:0009981] synonym: "embolus" EXACT [] synonym: "lateral interpositus (emboliform) nucleus" EXACT [DHBA:12401] synonym: "lateral interpositus nucleus" RELATED [] synonym: "nucleus emboliformis" RELATED OMO:0003011 [Wikipedia:Emboliform_nucleus] synonym: "nucleus emboliformis cerebelli" RELATED OMO:0003011 [NeuroNames:688] synonym: "nucleus interpositus anterior" EXACT OMO:0003011 [FMA:72538, FMA:TA] synonym: "nucleus interpositus anterior cerebelli" RELATED OMO:0003011 [NeuroNames:688] xref: BAMS:AInt xref: BAMS:Emb xref: BIRNLEX:1135 xref: BTO:0003837 xref: DHBA:12401 xref: DMBA:16930 xref: EMAPA:37821 {source="MA:th"} xref: FMA:72538 xref: HBA:12947 xref: neuronames:688 {source="BIRNLEX:1135"} xref: SCTID:279222003 xref: UMLS:C0175488 {source="BIRNLEX:1135"} xref: Wikipedia:Emboliform_nucleus is_a: UBERON:0004073 ! cerebellum interpositus nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png" xsd:anyURI [Term] id: UBERON:0002603 name: paraterminal gyrus namespace: uberon def: "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]." [Wikipedia:Paraterminal_gyrus] subset: human_reference_atlas subset: uberon_slim synonym: "gyrus paraterminalis" RELATED OMO:0003011 [Wikipedia:Paraterminal_gyrus] synonym: "gyrus subcallosus" RELATED OMO:0003011 [Wikipedia:Paraterminal_gyrus] synonym: "hippocampus praecommissuralis" RELATED OMO:0003011 [NeuroNames:171] synonym: "hippocampus precommissuralis" RELATED OMO:0003011 [NeuroNames:171] synonym: "paraterminal body (Noback)" RELATED [NeuroNames:171] synonym: "peduncle of the corpus callosum" RELATED [NeuroNames:171] synonym: "precommissural hippocampus" EXACT [FMA:61919] synonym: "subcallosal gyrus" EXACT [FMA:61919] xref: BAMS:PTG xref: BAMS:SuCG xref: BIRNLEX:1138 xref: DHBA:12161 xref: FMA:61919 xref: HBA:4065 xref: neuronames:171 {source="BIRNLEX:1138"} xref: UMLS:C0175231 {source="BIRNLEX:1138"} xref: Wikipedia:Paraterminal_gyrus is_a: UBERON:0002665 ! supracallosal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002604 name: ventral nucleus of lateral lemniscus namespace: uberon def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus] subset: uberon_slim synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484] synonym: "nucleus anterior lemnisci lateralis" EXACT OMO:0003011 [FMA:72484, FMA:TA] synonym: "nucleus lemnisci lateralis pars ventralis" RELATED OMO:0003011 [NeuroNames:592] synonym: "nucleus lemnisci lateralis ventralis" RELATED OMO:0003011 [NeuroNames:592] synonym: "nucleus of the lateral lemniscus ventral part" RELATED [BAMS:NLLv] synonym: "nucleus of the lateral lemniscus, ventral part" EXACT [ABA:NLLv] synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484] xref: BAMS:NLLv xref: BAMS:VLL xref: BIRNLEX:1140 xref: BM:LLV xref: DHBA:12457 xref: FMA:72484 xref: HBA:9200 xref: MBA:99 xref: neuronames:592 {source="BIRNLEX:1140"} xref: UMLS:C0175444 {source="BIRNLEX:1140"} xref: Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0006840 ! nucleus of lateral lemniscus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 {source="FMA", source="NIF"} ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/4/44/Lateral_lemniscus.PNG" xsd:anyURI [Term] id: UBERON:0002605 name: precentral operculum namespace: uberon def: "The ventrolateral lip of the precentral gyrus, which overlies the insula and is bounded by the lateral fissure (Brain Info)." [BIRNLEX:1141] synonym: "brodmann's area 6" RELATED [NeuroNames:2395] synonym: "operculum precentrale" EXACT OMO:0003011 [FMA:74888, FMA:TA] xref: BAMS:pro xref: BIRNLEX:1141 xref: FMA:74888 xref: neuronames:2395 {source="BIRNLEX:1141"} xref: UMLS:C0694581 {source="BIRNLEX:1141"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain [Term] id: UBERON:0002606 name: neuropil namespace: uberon def: "A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur." [PMID:21062451] subset: uberon_slim synonym: "neuropilus" RELATED OMO:0003011 [Wikipedia:Neuropil] xref: BIRNLEX:1142 xref: BTO:0005268 xref: CALOHA:TS-2403 xref: FBbt:00005139 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:261269 xref: GAID:740 xref: MESH:D019581 xref: NCIT:C12617 xref: NIF_Subcellular:sao205380252 xref: SCTID:67146008 xref: UMLS:C0228081 {source="ncithesaurus:Neuropil"} xref: Wikipedia:Neuropil is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001017 {source="FBbt", source="PMID:21062451"} ! central nervous system property_value: UBPROP:0000001 "Multi-cell component structure of the central nervous system consisting largely of neuron projections (tracts and synaptic neuropil domains) and associated glial cells. This corresponds to the part of the CNS that is enclosed by the cortex." xsd:string {source="FBC:BrainName"} [Term] id: UBERON:0002607 name: superior rostral sulcus namespace: uberon synonym: "SROS" BROAD OMO:0003000 [BIRNLEX:1143, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rostralis superior" EXACT [BIRNLEX:1143] xref: BAMS:sros xref: BIRNLEX:1143 xref: DHBA:146034840 xref: FMA:83766 xref: HBA:9366 xref: neuronames:74 {source="BIRNLEX:1143"} xref: UMLS:C0694583 {source="BIRNLEX:1143"} is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002608 name: caudal part of ventral lateral nucleus namespace: uberon synonym: "caudal part of the ventral lateral nucleus" RELATED [NeuroNames:339] synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "nucleus dorsooralis (van buren)" EXACT [BIRNLEX:1144] synonym: "nucleus lateralis intermedius mediodorsalis situs dorsalis" EXACT [BIRNLEX:1144] synonym: "nucleus ventralis lateralis, pars caudalis" EXACT [BIRNLEX:1144] synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194] synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194] synonym: "VLC" BROAD OMO:0003000 [BIRNLEX:1144, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VLC xref: BIRNLEX:1144 xref: DHBA:10422 xref: FMA:62194 xref: neuronames:339 {source="BIRNLEX:1144"} xref: UMLS:C0175281 {source="BIRNLEX:1144"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus [Term] id: UBERON:0002609 name: spinothalamic tract of midbrain namespace: uberon synonym: "spinothalamic tract of the midbrain" RELATED [NeuroNames:535] synonym: "STMB" BROAD OMO:0003000 [BIRNLEX:1150, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus spinothalamicus (mesencephali)" RELATED OMO:0003011 [NeuroNames:535] xref: BAMS:stmb xref: BIRNLEX:1150 xref: FMA:72463 xref: neuronames:535 {source="BIRNLEX:1150"} xref: SCTID:369090006 xref: UMLS:C0152376 {source="BIRNLEX:1150"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002610 name: cochlear nuclear complex namespace: uberon def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nuclei] subset: uberon_slim synonym: "cochlear nuclei" EXACT [FMA:72240] synonym: "nuclei cochleares" RELATED OMO:0003011 [Wikipedia:Cochlear_nuclei] xref: BAMS:CN xref: BIRNLEX:1151 xref: BM:Me-Co xref: DHBA:12437 xref: EV:0100260 xref: FMA:72240 xref: HBA:9528 xref: MBA:607 xref: neuronames:720 {source="BIRNLEX:1151"} xref: UMLS:C0152411 {source="ncithesaurus:Cochlear_Nuclei", source="BIRNLEX:1151"} xref: Wikipedia:Cochlear_nuclei is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001896 {inconsistent_with="MA", source="FMA"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png" xsd:anyURI property_value: RO:0002171 UBERON:0002126 {source="ABA"} property_value: RO:0002171 UBERON:0002162 {source="ABA"} property_value: RO:0002171 UBERON:0002591 {source="ABA"} property_value: RO:0002171 UBERON:0002864 {source="ABA"} property_value: RO:0002171 UBERON:0002866 {source="ABA"} property_value: RO:0002171 UBERON:0002873 {source="ABA"} property_value: RO:0002171 UBERON:0007633 {source="ABA"} property_value: UBPROP:0000015 "WP says 'The CN is located at the dorso-lateral side of the brainstem, spanning the junction of the pons and medulla.'. MA places this in pons, other sources the medulla" xsd:string [Term] id: UBERON:0002612 name: transverse orbital sulcus namespace: uberon synonym: "sulcus orbitalis transversus" EXACT [BIRNLEX:1155] synonym: "TOS" BROAD OMO:0003000 [BIRNLEX:1155, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tos xref: BIRNLEX:1155 xref: DHBA:13223 xref: FMA:83771 xref: neuronames:80 {source="BIRNLEX:1155"} xref: UMLS:C0262349 {source="BIRNLEX:1155"} is_a: UBERON:0002595 ! orbital sulcus [Term] id: UBERON:0002613 name: cerebellum globose nucleus namespace: uberon alt_id: UBERON:0004072 def: "The two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle." [MP:0009982] subset: pheno_slim subset: uberon_slim synonym: "globose nucleus" EXACT [FMA:72536] synonym: "medial interposed nucleus" EXACT [] synonym: "medial interpositus (globose) nucleus" EXACT [DHBA:12400] synonym: "medial interpositus nucleus" EXACT [] synonym: "nuclei globosi" RELATED OMO:0003011 [NeuroNames:689] synonym: "nucleus globosus" RELATED OMO:0003011 [Wikipedia:Globose_nucleus] synonym: "nucleus globosus cerebelli" RELATED OMO:0003011 [NeuroNames:689] synonym: "nucleus interpositus posterior" EXACT OMO:0003011 [FMA:72536, FMA:TA] synonym: "nucleus interpositus posterior cerebelli" RELATED OMO:0003011 [NeuroNames:689] synonym: "posterior interposed nucleus" EXACT [FMA:72536] synonym: "posterior interpositus nucleus" EXACT [FMA:72536] xref: BAMS:Glo xref: BIRNLEX:1158 xref: BTO:0003838 xref: DHBA:12400 xref: DMBA:16932 xref: EMAPA:37820 {source="MA:th"} xref: FMA:72536 xref: HBA:12949 xref: neuronames:689 {source="BIRNLEX:1158"} xref: SCTID:279223008 xref: UMLS:C0175489 {source="BIRNLEX:1158"} xref: Wikipedia:Globose_nucleus is_a: UBERON:0004073 ! cerebellum interpositus nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png" xsd:anyURI property_value: UBPROP:0000001 "One of two nuclei comprising the interpositus cerebellar nuclear complex of the deep cerebellar nuclei." xsd:string {source="BIRNLEX:1158"} property_value: UBPROP:0000001 "The globose nucleus is one of the deep cerebellar nuclei. It is located medial to the emboliform nucleus and lateral to the fastigial nucleus. This nucleus contains primarily large and small multipolar neurons. The globose nucleus and emboliform nucleus are occasionally referred to collectively as the interposed nucleus. [WP,unvetted][Wikipedia:Globose_nucleus]." xsd:string {source="Wikipedia:Globose_nucleus"} property_value: UBPROP:0000008 "It is recognized in human cerebellum but is not distinguishable in all mammalian species" xsd:string {source="NIF"} property_value: UBPROP:0000008 "it is recognized in human cerebellum but is not distinguishable in all mammalian species[MP]" xsd:string [Term] id: UBERON:0002614 name: medial part of ventral lateral nucleus namespace: uberon synonym: "medial part of the ventral lateral nucleus" RELATED [NeuroNames:340] synonym: "nucleus ventralis lateralis thalami, pars medialis" EXACT [BIRNLEX:1159] synonym: "nucleus ventralis lateralis, pars medialis" RELATED OMO:0003011 [NeuroNames:340] synonym: "nucleus ventrooralis medialis (Hassler)" EXACT [BIRNLEX:1159] synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195] synonym: "ventral medial nucleus" EXACT [FMA:62195] synonym: "ventral medial nucleus of thalamus" EXACT [BIRNLEX:1159] synonym: "ventral medial nucleus of the thalamus" RELATED [BAMS:VM] synonym: "ventromedial nucleus of thalamus" RELATED [BAMS:VM] synonym: "ventromedial nucleus of the thalamus" RELATED [BAMS:VM] synonym: "ventromedial thalamic nucleus" RELATED [BAMS:VM] synonym: "VLM" BROAD OMO:0003000 [BIRNLEX:1159, NIFSTD:NeuroNames_abbrevSource] synonym: "vMp (Macchi)" EXACT OMO:0003011 [FMA:62195, FMA:TA] xref: BAMS:VLM xref: BAMS:VM xref: BIRNLEX:1159 xref: BM:Die-Th-VM xref: DHBA:10427 xref: FMA:62195 xref: HBA:4421 xref: MBA:685 xref: neuronames:340 {source="BIRNLEX:1159"} xref: UMLS:C0175282 {source="BIRNLEX:1159"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus [Term] id: UBERON:0002615 name: ventral tegmental decussation namespace: uberon synonym: "anterior tegmental decussation" EXACT [FMA:72452] synonym: "decussatio inferior (Forel)" RELATED OMO:0003011 [NeuroNames:524] synonym: "decussatio tegmentalis anterior" EXACT OMO:0003011 [FMA:72452, FMA:TA] synonym: "decussatio tegmenti ventralis" RELATED OMO:0003011 [NeuroNames:524] synonym: "decussatio ventralis tegmenti" RELATED OMO:0003011 [NeuroNames:524] synonym: "decussation of forel" EXACT [] synonym: "inferior decussation (Forel's decussation)" RELATED [NeuroNames:524] synonym: "ventral tegmental decussation (Forel)" RELATED [NeuroNames:524] synonym: "ventral tegmental decussation of forel" EXACT [] synonym: "VTGX" BROAD OMO:0003000 [BIRNLEX:1163, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:vtd xref: BAMS:vtgx xref: BIRNLEX:1163 xref: DHBA:12366 xref: DMBA:17807 xref: FMA:72452 xref: MBA:397 xref: neuronames:524 {source="BIRNLEX:1163"} xref: SCTID:369249001 xref: UMLS:C0152371 {source="BIRNLEX:1163"} is_a: UBERON:0007418 ! neural decussation relationship: part_of UBERON:0002691 ! ventral tegmental area [Term] id: UBERON:0002616 name: regional part of brain namespace: uberon def: "Anatomical divisons of the brain according to one or more criteria, e.g. cytoarchitectural, gross anatomy. Parts may be contiguous in 3D or not, e.g., basal ganglia." [BIRNLEX:1167] subset: non_informative synonym: "anatomical structure of brain" EXACT [OBOL:automatic] synonym: "biological structure of brain" EXACT [OBOL:automatic] synonym: "brain anatomical structure" EXACT [OBOL:automatic] synonym: "brain biological structure" EXACT [OBOL:automatic] synonym: "brain part" EXACT [] synonym: "neuraxis segment" EXACT [FMA:55676] synonym: "neuroanatomical region" EXACT [] synonym: "segment of brain" EXACT [BIRNLEX:1167] xref: BIRNLEX:1167 xref: FMA:55676 xref: NCIT:C13031 xref: SCTID:384763002 xref: UMLS:C0445620 {source="ncithesaurus:Brain_Part"} is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002617 name: pars postrema of ventral lateral nucleus namespace: uberon synonym: "nucleus dorsointermedius externus magnocellularis (hassler)" EXACT [BIRNLEX:1170] synonym: "nucleus lateralis intermedius mediodorsalis situs postremus" EXACT [BIRNLEX:1170] synonym: "nucleus ventralis lateralis thalami, pars postrema" EXACT [BIRNLEX:1170] synonym: "nucleus ventralis lateralis, pars postrema" RELATED OMO:0003011 [NeuroNames:341] synonym: "pars postrema of the ventral lateral nucleus" RELATED [NeuroNames:341] synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196] synonym: "ventrolateral posterior thalamic nucleus" RELATED [BAMS:VLP] synonym: "ventrolateral preoptic nucleus" RELATED [BAMS:VLP] synonym: "VLP" BROAD OMO:0003000 [BIRNLEX:1170, NIFSTD:NeuroNames_abbrevSource] synonym: "vLps" EXACT OMO:0003011 [FMA:62196, FMA:TA] xref: BAMS:VLP xref: BIRNLEX:1170 xref: DMBA:15612 xref: FMA:62196 xref: HBA:4423 xref: MBA:689 xref: neuronames:341 {source="BIRNLEX:1170"} xref: UMLS:C0262304 {source="BIRNLEX:1170"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus [Term] id: UBERON:0002618 name: root of trochlear nerve namespace: uberon alt_id: UBERON:0002674 synonym: "4nf" BROAD OMO:0003000 [BIRNLEX:1172, NIFSTD:NeuroNames_abbrevSource] synonym: "central part of trochlear nerve" EXACT [FMA:71116] synonym: "fibrae nervi trochlearis" RELATED OMO:0003011 [NeuroNames:486] synonym: "trochlear nerve fibers" EXACT [FMA:71116] synonym: "trochlear nerve or its root" RELATED [BAMS:4n] synonym: "trochlear nerve root" EXACT [FMA:71116] synonym: "trochlear nerve tract" EXACT [FMA:71116] synonym: "trochlear nerve/root" RELATED [BAMS:4n] xref: BAMS:4n xref: BAMS:4nf xref: BIRNLEX:1172 xref: BIRNLEX:1341 xref: DHBA:12377 xref: DMBA:17737 xref: FMA:71116 xref: neuronames:486 {source="BIRNLEX:1172"} xref: UMLS:C0175374 {source="BIRNLEX:1172"} is_a: UBERON:0006843 ! root of cranial nerve relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0002620 name: tuber cinereum namespace: uberon def: "Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia)." [BIRNLEX:1189, Wikipedia:Tuber_cinereum] subset: uberon_slim synonym: "TBCN" BROAD OMO:0003000 [BIRNLEX:1189, NIFSTD:NeuroNames_abbrevSource] synonym: "tuber cinereum area" RELATED [NeuroNames:1782] synonym: "tuberal area" RELATED [NeuroNames:1782] synonym: "tuberal area of hypothalamus" RELATED [NeuroNames:1782] synonym: "tuberal area, hypothalamus" RELATED [NeuroNames:1782] synonym: "tuberal nucleus" RELATED [MA:0000844] synonym: "tuberal region" RELATED [MA:0000844] synonym: "tubercle of Rolando" RELATED [Wikipedia:Tuber_cinereum] xref: BAMS:tbcn xref: BAMS:TuCn xref: BIRNLEX:1189 xref: DHBA:10647 xref: DMBA:15665 xref: EMAPA:35420 xref: FMA:62327 xref: GAID:649 xref: HBA:4633 xref: MA:0000844 xref: MESH:D014371 xref: NCIT:C33817 xref: neuronames:1782 xref: neuronames:393 {source="BIRNLEX:1189"} xref: SCTID:362381006 xref: UMLS:C0041283 {source="ncithesaurus:Tuber_Cinereum", source="BIRNLEX:1189"} xref: UMLS:C1284640 {source="BIRNLEX:1189"} xref: Wikipedia:Tuber_cinereum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png" xsd:anyURI [Term] id: UBERON:0002622 name: preoptic periventricular nucleus namespace: uberon def: "The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]." [Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus] synonym: "dorsal periventricular hypothalamic nucleus" RELATED [NeuroNames:379] synonym: "nucleus periventricularis hypothalami, pars dorsalis" RELATED OMO:0003011 [NeuroNames:379] synonym: "nucleus periventricularis praeopticus" RELATED OMO:0003011 [NeuroNames:379] synonym: "nucleus periventricularis preopticus" RELATED OMO:0003011 [NeuroNames:379] synonym: "nucleus preopticus periventricularis" EXACT OMO:0003011 [FMA:62324, FMA:TA] synonym: "periventricular hypothalamic nucleus, preoptic part" RELATED [BAMS:PVpo] synonym: "periventricular nucleus, anterior portion" RELATED [NeuroNames:379] synonym: "periventricular preoptic nucleus" EXACT [FMA:62324] synonym: "POP" BROAD OMO:0003000 [BIRNLEX:1201, NIFSTD:NeuroNames_abbrevSource] synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324] xref: BAMS:POP xref: BAMS:PVpo xref: BIRNLEX:1201 xref: FMA:62324 xref: HBA:4549 xref: MBA:133 xref: neuronames:379 {source="BIRNLEX:1201"} xref: SCTID:369127000 xref: UMLS:C0175314 {source="BIRNLEX:1201"} xref: UMLS:C1289554 {source="BIRNLEX:1201"} xref: Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0002623 name: cerebral peduncle namespace: uberon def: "Synonym for macrodissected adult human tegmentum (Vicq d'Azyr, 1784; Swanson, 2000); pp. 555-556. Later used thus by for example His (1893b, p. 178), Herrick (1915, p. 160), Strong & Elwyn (1943, p. 17), Carpenter (1976, p. 367), Williams & Warwick (1980, p. 935)." [BIRNLEX:1202] comment: Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM) subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "cerebal peduncle" RELATED [NeuroNames:487] synonym: "cerebral peduncle" EXACT [FMA:62394] synonym: "cerebral peduncle (archaic)" RELATED [NeuroNames:487] synonym: "CP" BROAD OMO:0003000 [BIRNLEX:1202, NIFSTD:NeuroNames_abbrevSource] synonym: "peduncle of midbrain" EXACT [FMA:62394] synonym: "pedunculi cerebri" RELATED OMO:0003011 [NeuroNames:487] synonym: "pedunculus cerebralis" RELATED OMO:0003011 [NeuroNames:487] synonym: "pedunculus cerebri" EXACT OMO:0003011 [FMA:62394, FMA:TA] synonym: "pedunculus cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_peduncle] synonym: "tegmentum" RELATED [] xref: BAMS:cpd xref: BIRNLEX:1202 xref: BM:CP xref: BTO:0004676 xref: EFO:0001987 xref: FMA:62394 xref: MBA:924 xref: MESH:D065850 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32291 xref: neuronames:487 {source="BIRNLEX:1202"} xref: SCTID:362391000 xref: UMLS:C0007793 {source="BIRNLEX:1202", source="ncithesaurus:Cerebral_Peduncle"} xref: Wikipedia:Cerebral_peduncle is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis is_a: UBERON:0016554 ! white matter of midbrain relationship: part_of UBERON:0001891 ! midbrain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002624 name: orbital part of inferior frontal gyrus namespace: uberon def: "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.the remainder of the inferior frontal gyrus once the pars opercularis and triangularis have been defined (Christine Fennema-Notestine)., NeuroNames." [BIRNLEX:1207] subset: human_reference_atlas synonym: "brodmann's area 36" RELATED [NeuroNames:2410] synonym: "gyrus frontalis inferior, pars orbitalis" EXACT OMO:0003011 [FMA:61982, FMA:TA] synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982] synonym: "pars orbitalis gyri frontalis inferioris" EXACT [BIRNLEX:1207] synonym: "pars orbitalis, inferior frontal gyrus" BROAD [http://orcid.org/0000-0001-6755-0259] xref: BAMS:IFGOr xref: BAMS:OrIFG xref: BIRNLEX:1207 xref: DHBA:12120 xref: FMA:61982 xref: HBA:4044 xref: NCIT:C33221 xref: neuronames:2410 {source="BIRNLEX:1207"} xref: UMLS:C0262300 {source="BIRNLEX:1207", source="ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus"} xref: Wikipedia:Orbital_part_of_inferior_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002625 name: median preoptic nucleus namespace: uberon def: "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus." [Wikipedia:Preoptic_area#Median_preoptic_nucleus] subset: uberon_slim synonym: "median preoptic nucleus (Loo)" RELATED [NeuroNames:378] synonym: "MnPO" BROAD OMO:0003000 [BIRNLEX:1208, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus praeopticus medianus" RELATED OMO:0003011 [NeuroNames:378] synonym: "nucleus preopticus medianus" RELATED OMO:0003011 [NeuroNames:378] synonym: "periventricular nucleus, preventricular portion" RELATED [NeuroNames:378] xref: BAMS:MEPO xref: BAMS:MnPO xref: BIRNLEX:1208 xref: BM:MPO xref: BTO:0006168 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:13063 xref: FMA:62323 xref: HBA:4548 xref: MBA:452 xref: neuronames:378 {source="BIRNLEX:1208"} xref: UMLS:C0259793 {source="BIRNLEX:1208"} xref: Wikipedia:Preoptic_area#Median_preoptic_nucleus is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: RO:0002171 UBERON:0001934 {source="ABA"} property_value: RO:0002171 UBERON:0002034 {source="ABA"} property_value: RO:0002171 UBERON:0002219 {source="ABA"} property_value: RO:0002171 UBERON:0002689 {source="ABA"} property_value: RO:0002171 UBERON:0002690 {source="ABA"} property_value: RO:0002171 UBERON:0007626 {source="ABA"} [Term] id: UBERON:0002626 name: head of caudate nucleus namespace: uberon def: "Largest part of the caudate nucleus lying lateral to and protruding into the anterior of the lateral ventricle." [BIRNLEX:1212] synonym: "caput (caudatus)" EXACT [FMA:61852] synonym: "caput nuclei caudati" RELATED OMO:0003011 [NeuroNames:227] synonym: "caudate nuclear head" EXACT [FMA:61852] synonym: "head of the caudate nucleus" RELATED [NeuroNames:227] xref: BAMS:HCd xref: BIRNLEX:1212 xref: DHBA:10335 xref: EMAPA:18547 xref: FMA:61852 xref: HBA:12900 xref: neuronames:227 {source="BIRNLEX:1212"} xref: SCTID:279298007 xref: UMLS:C0152336 {source="BIRNLEX:1212"} is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002627 name: capsule of medial geniculate body namespace: uberon synonym: "capsula corporis geniculati medialis" EXACT [BIRNLEX:1214] synonym: "capsule of the medial geniculate body" RELATED [NeuroNames:359] synonym: "medial geniculate body capsule" EXACT [FMA:62049] xref: BAMS:cmg xref: BIRNLEX:1214 xref: FMA:62049 xref: neuronames:359 {source="BIRNLEX:1214"} is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002628 name: tail of caudate nucleus namespace: uberon def: "Narrowest part of the caudate nucleus, roughtly defined as that portion that curves ventrally from the body of the caudate nucleus, following the temporal horn of the lateral ventricle." [BIRNLEX:1215] synonym: "cauda (caudatus)" RELATED OMO:0003011 [NeuroNames:229] synonym: "cauda nuclei caudati" RELATED OMO:0003011 [NeuroNames:229] synonym: "caudate nuclear tail" EXACT [FMA:61854] synonym: "tail of the caudate nucleus" RELATED [NeuroNames:229] xref: BAMS:TCd xref: BIRNLEX:1215 xref: DHBA:10337 xref: EMAPA:18548 xref: FMA:61854 xref: HBA:12901 xref: neuronames:229 {source="BIRNLEX:1215"} xref: SCTID:279299004 is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002629 name: triangular part of inferior frontal gyrus namespace: uberon def: "Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine)." [BIRNLEX:1216] subset: human_reference_atlas synonym: "gyrus frontalis inferior, pars triangularis" EXACT OMO:0003011 [FMA:61980, FMA:TA] synonym: "inferior frontal gyrus, pars triangularis" RELATED [http://orcid.org/0000-0001-6755-0259] synonym: "inferior frontal gyrus, triangular part" RELATED [BAMS:IFGTr] synonym: "pars triangularis" EXACT OMO:0003011 [FMA:61980, FMA:TA] synonym: "pars triangularis gyri frontalis inferioris" EXACT [BIRNLEX:1216] synonym: "pars triangularis of frontal operculum (Ono)" EXACT OMO:0003011 [FMA:61980, FMA:TA] xref: BAMS:IFGTr xref: BAMS:TrIFG xref: BIRNLEX:1216 xref: DHBA:12118 xref: FMA:61980 xref: HBA:4038 xref: NCIT:C33811 xref: neuronames:86 {source="BIRNLEX:1216"} xref: UMLS:C0262350 {source="BIRNLEX:1216", source="ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus"} xref: Wikipedia:Triangular_part_of_inferior_frontal_gyrus relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002630 name: body of caudate nucleus namespace: uberon def: "Part of caudate nucleus lying just dorsal to the thalamus." [BIRNLEX:1217] synonym: "body of the caudate nucleus" RELATED [NeuroNames:228] synonym: "caudate body" RELATED [FMA:61853] synonym: "caudate nuclear body" EXACT [FMA:61853] synonym: "corpus (caudatus)" EXACT [FMA:61853] synonym: "corpus nuclei caudati" RELATED OMO:0003011 [NeuroNames:228] xref: BAMS:BCd xref: BIRNLEX:1217 xref: DHBA:10336 xref: FMA:61853 xref: HBA:12899 xref: neuronames:228 {source="BIRNLEX:1217"} xref: SCTID:314175006 xref: UMLS:C0152338 {source="BIRNLEX:1217"} is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002631 name: cerebral crus namespace: uberon def: "The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]." [Wikipedia:Cerebral_crus] subset: uberon_slim synonym: "base of cerebral peduncle" RELATED [BTO:0004677] synonym: "basis cerebri (Oertel)" RELATED OMO:0003011 [NeuroNames:539] synonym: "basis pedunculi (Oertel)" RELATED OMO:0003011 [NeuroNames:539] synonym: "basis pedunculi cerebri (Willis)" RELATED OMO:0003011 [NeuroNames:539] synonym: "CCR" BROAD OMO:0003000 [BIRNLEX:1218, NIFSTD:NeuroNames_abbrevSource] synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464] synonym: "cerebral peduncle, basal part" RELATED [NeuroNames:539] synonym: "crura cerebri" EXACT [MA:0001056] synonym: "crus cerebri" EXACT [EV:0100243] synonym: "crus cerebri" RELATED OMO:0003011 [BTO:0004677, Wikipedia:Cerebral_crus] synonym: "crus of the cerebral peduncle" RELATED [NeuroNames:539] synonym: "pars neo-encephalica pedunculi" RELATED OMO:0003011 [NeuroNames:539] synonym: "pedunculus cerebri, pars basalis" RELATED OMO:0003011 [NeuroNames:539] synonym: "pes pedunculi" RELATED OMO:0003011 [NeuroNames:539] synonym: "pes pedunculi of midbrain" RELATED OMO:0003011 [NeuroNames:539] xref: BAMS:cp xref: BIRNLEX:1218 xref: BTO:0004677 xref: EMAPA:37499 {source="MA:th"} xref: EV:0100243 xref: FMA:72464 xref: MA:0001056 xref: MESH:D065843 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32409 xref: neuronames:539 {source="BIRNLEX:1218"} xref: UMLS:C0175414 {source="BIRNLEX:1218"} xref: Wikipedia:Cerebral_crus is_a: UBERON:0016554 ! white matter of midbrain relationship: part_of UBERON:0002623 {source="BTO"} ! cerebral peduncle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI [Term] id: UBERON:0002632 name: medial part of medial mammillary nucleus namespace: uberon synonym: "medial mamillary nucleus" RELATED [BAMS:MM] synonym: "medial mammillary nucleus (carpenter)" EXACT [] synonym: "medial mammillary nucleus median part" RELATED [BAMS:MMme] synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345] synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345] synonym: "medial part of the medial mammillary nucleus" RELATED [NeuroNames:415] synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345] synonym: "MML" BROAD OMO:0003000 [BIRNLEX:1220, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis mamillaris medialis, pars medialis" RELATED OMO:0003011 [NeuroNames:415] synonym: "nucleus medialis corpus mamillaris (Shantha)" RELATED OMO:0003011 [NeuroNames:415] xref: BAMS:MMM xref: BAMS:MMme xref: BAMS:Mmme xref: BAMS:MMn xref: BIRNLEX:1220 xref: DHBA:10501 xref: DMBA:15730 xref: FMA:62345 xref: MBA:732 xref: neuronames:415 {source="BIRNLEX:1220"} xref: UMLS:C0694605 {source="BIRNLEX:1220"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucleus [Term] id: UBERON:0002633 name: motor nucleus of trigeminal nerve namespace: uberon def: "Nucleus located in the pontine tegmentum containing cells that give rise to motor innervation of the jaw through the trigeminal nerve. It receives both crossed and uncrossed fibers from the cerebral cortex (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1996, pg 248)." [BIRNLEX:1222] subset: pheno_slim subset: vertebrate_core synonym: "motor nucleus" RELATED [NeuroNames:559] synonym: "motor nucleus of cranial nerve v" EXACT [] synonym: "motor nucleus of the trigeminal" RELATED [NeuroNames:559] synonym: "motor nucleus of the trigeminal nerve" RELATED [NeuroNames:559] synonym: "motor nucleus of trigeminal" RELATED [BAMS:V] synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562] synonym: "motor nucleus V" EXACT [ZFA:0001365] synonym: "motor trigeminal nucleus" EXACT [BTO:0001075] synonym: "nucleus motorius nervi trigeminalis" RELATED OMO:0003011 [NeuroNames:559] synonym: "nucleus motorius nervi trigemini" EXACT OMO:0003011 [FMA:54562, FMA:TA] synonym: "nucleus motorius nervi trigemini" RELATED OMO:0003011 [Wikipedia:Trigeminal_motor_nucleus] synonym: "nucleus motorius trigeminalis" RELATED OMO:0003011 [NeuroNames:559] synonym: "nV" EXACT [ZFA:0001365] synonym: "trigeminal motor nuclei" EXACT OMO:0003004 [TAO:0001365] synonym: "trigeminal motor nucleus" EXACT [ZFA:0001365] synonym: "trigeminal V motor nucleus" EXACT [MA:0001029] xref: BAMS:Mo5 xref: BAMS:V xref: BIRNLEX:1222 xref: BM:Vm xref: BTO:0001075 xref: DHBA:12429 xref: EMAPA:35882 xref: EV:0100273 xref: FMA:54562 xref: HBA:9206 xref: MA:0001029 xref: MBA:621 xref: MESH:D066266 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33140 xref: neuronames:559 {source="BIRNLEX:1222"} xref: SCTID:38390003 xref: TAO:0001365 xref: UMLS:C0228700 {source="ncithesaurus:Motor_Nucleus_of_the_Trigeminal_Nerve", source="BIRNLEX:1222"} xref: VHOG:0001355 xref: Wikipedia:Trigeminal_motor_nucleus xref: ZFA:0001365 is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0002925 ! trigeminal nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 {source="ABA"} ! pons relationship: part_of UBERON:0002925 {source="MA"} ! trigeminal nucleus relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} property_value: UBPROP:0000012 "this in ZFA this is part of the medulla; pons is a dubious structure for zebrafish" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0002634 name: anterior nucleus of hypothalamus namespace: uberon def: "A loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum." [MESH:A08.186.211.730.317.357.342.063, MP:0008848] subset: pheno_slim subset: uberon_slim synonym: "AH" BROAD OMO:0003000 [BIRNLEX:1226, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic area" RELATED [FMA:62319] synonym: "anterior hypothalamic area anterior part" RELATED [BAMS:AHA] synonym: "anterior hypothalamic area, anterior part" RELATED [BAMS:AHA] synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319] synonym: "anterior nucleus of the hypothalamus" RELATED [NeuroNames:386] synonym: "area hypothalamica rostralis" EXACT OMO:0003011 [FMA:62319, FMA:TA] synonym: "fundamental gray substance" EXACT [FMA:62319] synonym: "nucleus anterior hypothalami" RELATED OMO:0003011 [BTO:0002450, Wikipedia:Anterior_hypothalamic_nucleus] synonym: "nucleus hypothalamicus anterior" RELATED OMO:0003011 [NeuroNames:386] synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319] xref: BAMS:AHN xref: BIRNLEX:1226 xref: BM:Die-Hy-HAA xref: BTO:0002450 xref: DHBA:10475 xref: DMBA:15662 xref: EMAPA:37409 {source="MA:th"} xref: EV:0100231 xref: FMA:62319 xref: GAID:642 xref: HBA:12903 xref: MBA:88 xref: MESH:D007025 xref: neuronames:386 {source="BIRNLEX:1226"} xref: SCTID:369133009 xref: UMLS:C0020653 {source="BIRNLEX:1226"} xref: Wikipedia:Anterior_hypothalamic_nucleus is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0001935 {source="ABA"} property_value: RO:0002171 UBERON:0002035 {source="ABA"} property_value: RO:0002171 UBERON:0002206 {source="ABA"} property_value: RO:0002171 UBERON:0002706 {source="ABA"} [Term] id: UBERON:0002636 name: lateral pulvinar nucleus namespace: uberon synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181] synonym: "LPul" BROAD OMO:0003000 [BIRNLEX:1228, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris lateralis" EXACT [BIRNLEX:1228] synonym: "nucleus pulvinaris lateralis (Hassler)" EXACT [BIRNLEX:1228] synonym: "nucleus pulvinaris lateralis thalami" EXACT [BIRNLEX:1228] synonym: "nucleus pulvinaris thalami, pars lateralis" EXACT [BIRNLEX:1228] xref: BAMS:LPul xref: BIRNLEX:1228 xref: BM:Die-Th-Pl-Pll xref: DHBA:10412 xref: FMA:62181 xref: neuronames:330 {source="BIRNLEX:1228"} xref: UMLS:C0228345 {source="BIRNLEX:1228"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002981 {source="FMA"} ! pulvinar nucleus [Term] id: UBERON:0002637 name: ventral anterior nucleus of thalamus namespace: uberon def: "The ventral anterior nucleus is a nucleus of the thalamus." [Wikipedia:Ventral_anterior_nucleus] subset: human_reference_atlas subset: uberon_slim synonym: "nucleus lateropolaris" EXACT [BIRNLEX:1232] synonym: "nucleus ventralis anterior" EXACT [BIRNLEX:1232] synonym: "nucleus ventralis anterior thalami" EXACT [BIRNLEX:1232] synonym: "nucleus ventralis anterior thalami" RELATED OMO:0003011 [Wikipedia:Ventral_anterior_nucleus] synonym: "nucleus ventralis thalami anterior" EXACT [BIRNLEX:1232] synonym: "VA" BROAD OMO:0003000 [BIRNLEX:1232, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral anterior nucleus" EXACT [FMA:62184] synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184] synonym: "ventral anterior nucleus of the thalamus" RELATED [BAMS:VA] synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184] synonym: "ventroanterior nucleus of the thalamus" EXACT [] synonym: "ventroanterior thalamic nucleus" EXACT [BIRNLEX:1232] xref: BAMS:VA xref: BIRNLEX:1232 xref: BM:Die-Th-VA xref: BTO:0002468 xref: DHBA:10417 xref: DMBA:16427 xref: FMA:62184 xref: HBA:4418 xref: NCIT:C33861 xref: neuronames:334 {source="BIRNLEX:1232"} xref: SCTID:279131008 xref: UMLS:C0175276 {source="ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus", source="BIRNLEX:1232"} xref: Wikipedia:Ventral_anterior_nucleus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002776 {source="BTO", source="FMA", source="NIF"} ! ventral nuclear group property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002638 name: medial pulvinar nucleus namespace: uberon synonym: "MPul" BROAD OMO:0003000 [BIRNLEX:1233, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris medialis" EXACT [BIRNLEX:1233] synonym: "nucleus pulvinaris medialis thalami" EXACT [BIRNLEX:1233] synonym: "nucleus pulvinaris thalami, pars medialis" EXACT [BIRNLEX:1233] xref: BAMS:MPul xref: BIRNLEX:1233 xref: BM:Die-Th-Pl-Plm xref: DHBA:10411 xref: FMA:62182 xref: HBA:4412 xref: neuronames:331 {source="BIRNLEX:1233"} xref: UMLS:C0228344 {source="BIRNLEX:1233"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002981 ! pulvinar nucleus [Term] id: UBERON:0002639 name: midbrain reticular formation namespace: uberon def: "Part of the reticular formation located in the midbrain tegmentum." [BIRNLEX:1235] synonym: "formatio reticularis mesencephali" RELATED OMO:0003011 [NeuroNames:501] synonym: "formatio reticularis tegmentalis" RELATED OMO:0003011 [NeuroNames:501] synonym: "formatio reticularis tegmenti mesencephali" RELATED OMO:0003011 [NeuroNames:501] synonym: "MBRF" BROAD OMO:0003000 [BIRNLEX:1235, NIFSTD:NeuroNames_abbrevSource] synonym: "reticular formation of midbrain" EXACT [FMA:62406] synonym: "substantia reticularis mesencephali" RELATED OMO:0003011 [NeuroNames:501] synonym: "tegmental reticular formation" EXACT [FMA:62406] xref: BAMS:MBRF xref: BIRNLEX:1235 xref: BM:MB-MBRF xref: DHBA:12239 xref: EMAPA:35570 xref: FMA:62406 xref: HBA:9018 xref: MESH:D066265 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:501 {source="BIRNLEX:1235"} xref: SCTID:369234009 xref: UMLS:C0228394 {source="BIRNLEX:1235"} is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0002275 ! reticular formation [Term] id: UBERON:0002640 name: cuneocerebellar tract namespace: uberon def: "White matter tract that originates from the cuneate and external cuneate nuclei. It relays ascending spinal fibers in the dorsal funiculus and conveys information from forelimbs to the cerebellum." [BIRNLEX:1238] subset: uberon_slim synonym: "cuneocerebellar fibers" EXACT [BIRNLEX:1238] synonym: "tractus cuneocerebelli" RELATED OMO:0003011 [NeuroNames:803] xref: BAMS:ccb xref: BAMS:cct xref: BIRNLEX:1238 xref: DHBA:12745 xref: FMA:72637 xref: MBA:499 xref: neuronames:803 {source="BIRNLEX:1238"} xref: UMLS:C0175556 {source="BIRNLEX:1238"} xref: Wikipedia:Cuneocerebellar_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0014649 ! white matter of medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/98/Gray699.png" xsd:anyURI [Term] id: UBERON:0002641 name: oral pulvinar nucleus namespace: uberon synonym: "anterior pulvinar nucleus" EXACT [FMA:62180] synonym: "nucleus pulvinaris anterior" EXACT OMO:0003011 [FMA:62180, FMA:TA] synonym: "nucleus pulvinaris oralis" EXACT [BIRNLEX:1239] synonym: "nucleus pulvinaris oralis thalami" EXACT [BIRNLEX:1239] synonym: "OPul" BROAD OMO:0003000 [BIRNLEX:1239, NIFSTD:NeuroNames_abbrevSource] synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180] synonym: "oral part of pulvinar" EXACT [FMA:62180] synonym: "oral portion of pulvinar" EXACT [FMA:62180] xref: BAMS:APul xref: BAMS:OPul xref: BIRNLEX:1239 xref: BM:Die-Th-Pl-Pla xref: DHBA:10410 xref: FMA:62180 xref: HBA:4411 xref: neuronames:329 {source="BIRNLEX:1239"} xref: UMLS:C0262299 {source="BIRNLEX:1239"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002981 ! pulvinar nucleus [Term] id: UBERON:0002642 name: cuneate fasciculus of medulla namespace: uberon def: "Part of cuneate fasciculus found in the medulla." [BIRNLEX:1242] synonym: "fasciculus cuneatus (myelencephali)" EXACT OMO:0003011 [FMA:72623, FMA:TA] synonym: "nucleus pulvinaris oromedialis (Hassler)" RELATED OMO:0003011 [NeuroNames:2190] xref: BAMS:cu xref: BIRNLEX:1242 xref: FMA:72623 xref: neuronames:2190 {source="BIRNLEX:1242"} xref: UMLS:C0228521 {source="BIRNLEX:1242"} is_a: UBERON:0005832 ! cuneate fasciculus is_a: UBERON:0005838 ! fasciculus of brain is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001896 ! medulla oblongata property_value: IAO:0000116 "TODO - change definition to be the *whole* of the CF in the MO. isa parentage to fasciculus of brain should be inferred" xsd:string [Term] id: UBERON:0002643 name: decussation of medial lemniscus namespace: uberon def: "The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]." [Wikipedia:Sensory_decussation] subset: uberon_slim synonym: "decussatio lemnisci medialis" RELATED OMO:0003011 [Wikipedia:Sensory_decussation] synonym: "decussatio lemniscorum" RELATED OMO:0003011 [NeuroNames:788] synonym: "decussatio lemniscorum medialium" RELATED OMO:0003011 [NeuroNames:788] synonym: "decussatio sensoria" RELATED OMO:0003011 [NeuroNames:788] synonym: "decussation of lemnisci" EXACT [FMA:72622] synonym: "decussation of lemniscus" EXACT [FMA:72622] synonym: "decussation of medial lemnisci" EXACT [FMA:72622] synonym: "decussation of the medial lemniscus" RELATED [NeuroNames:788] synonym: "medial lemniscus decussation" EXACT [FMA:72622] synonym: "medullary sensory decussation" EXACT [FMA:72622] synonym: "sensory decussation" EXACT [FMA:72622] xref: BAMS:mlx xref: BIRNLEX:1245 xref: BM:Me-LMX xref: DHBA:12732 xref: DMBA:17777 xref: FMA:72622 xref: HBA:265505622 xref: neuronames:788 {source="BIRNLEX:1245"} xref: UMLS:C0175544 {source="BIRNLEX:1245"} xref: Wikipedia:Sensory_decussation is_a: UBERON:0007418 ! neural decussation relationship: part_of UBERON:0001896 ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray759.png" xsd:anyURI [Term] id: UBERON:0002644 name: intermediate orbital gyrus namespace: uberon subset: human_reference_atlas xref: BAMS:IOrG xref: BIRNLEX:1247 xref: FMA:80183 xref: OldNeuroNames:-1278177547 {source="BIRNLEX:1247"} is_a: UBERON:0007193 ! orbital gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002645 name: densocellular part of medial dorsal nucleus namespace: uberon synonym: "densocellular part of the medial dorsal nucleus" RELATED [NeuroNames:316] synonym: "MDD" BROAD OMO:0003000 [BIRNLEX:1255, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus medialis dorsalis paralamellaris (Hassler)" EXACT [BIRNLEX:1255] synonym: "nucleus medialis dorsalis, pars densocellularis" EXACT [BIRNLEX:1255] xref: BIRNLEX:1255 xref: DHBA:10399 xref: FMA:62163 xref: HBA:4404 xref: neuronames:316 {source="BIRNLEX:1255"} xref: UMLS:C0262218 {source="BIRNLEX:1255"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="NIFSTD"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0002646 name: dorsal longitudinal fasciculus of medulla namespace: uberon def: "Part of dorsal longitudinal fasciculus located in the medulla." [BIRNLEX:1257] synonym: "bundle of Schutz of medulla" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of the medulla" RELATED [NeuroNames:783] synonym: "fasciculus longitudinalis dorsalis (myelencephali)" RELATED OMO:0003011 [NeuroNames:783] synonym: "fasciculus of Schutz of medulla" EXACT [OBOL:automatic] synonym: "medulla bundle of Schutz" EXACT [OBOL:automatic] synonym: "medulla dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "medulla fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "medulla posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of medulla" EXACT [OBOL:automatic] xref: BAMS:dlfm xref: BIRNLEX:1257 xref: FMA:72617 xref: neuronames:783 {source="BIRNLEX:1257"} xref: UMLS:C0228537 {source="BIRNLEX:1257"} is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002647 name: magnocellular part of medial dorsal nucleus namespace: uberon synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161] synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161] synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161] synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161] synonym: "magnocellular part of mediodorsal nucleus" EXACT [BIRNLEX:1262] synonym: "magnocellular part of the medial dorsal nucleus" RELATED [NeuroNames:314] synonym: "MDM" BROAD OMO:0003000 [BIRNLEX:1262, NIFSTD:NeuroNames_abbrevSource] synonym: "MDmc" EXACT [] {comment="PMID:23950738"} synonym: "mediodorsal nucleus of the thalamus, medial part" EXACT [MBA:636] synonym: "nucleus medialis dorsalis, pars magnocellularis" EXACT [BIRNLEX:1262] synonym: "nucleus medialis fibrosus" EXACT [BIRNLEX:1262] synonym: "nucleus medialis fibrosus (hassler)" EXACT [BIRNLEX:1262] synonym: "pars magnocellularis nuclei mediodorsalis thalami" EXACT OMO:0003011 [FMA:62161, FMA:TA] xref: BIRNLEX:1262 xref: DHBA:10400 xref: EMAPA:35544 xref: FMA:62161 xref: HBA:4403 xref: MBA:636 xref: neuronames:314 {source="BIRNLEX:1262"} xref: UMLS:C0228331 {source="BIRNLEX:1262"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus of thalamus property_value: IAO:0000232 "See https://github.com/obophenotype/uberon/issues/2229" xsd:string [Term] id: UBERON:0002648 name: anterior median eminence namespace: uberon synonym: "AME" BROAD OMO:0003000 [BIRNLEX:1264, NIFSTD:NeuroNames_abbrevSource] synonym: "eminentia mediana anterior" RELATED OMO:0003011 [NeuroNames:403] xref: BAMS:AME xref: BIRNLEX:1264 xref: FMA:74870 xref: neuronames:403 {source="BIRNLEX:1264"} xref: UMLS:C0175323 {source="BIRNLEX:1264"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis [Term] id: UBERON:0002649 name: dorsolateral fasciculus of medulla namespace: uberon def: "Part of Lissauer's tract located in the medulla." [BIRNLEX:1267] subset: uberon_slim synonym: "dorsolateral fasciculus" EXACT [BIRNLEX:1267] synonym: "dorsolateral fasciculus of the medulla" RELATED [NeuroNames:782] synonym: "dorsolateral tract" EXACT [FMA:72616] synonym: "fasciculus dorsolateralis" RELATED OMO:0003011 [NeuroNames:782] synonym: "lissauer's tract" EXACT [FMA:72616] synonym: "posterolateral fasciculus" EXACT [FMA:72616] synonym: "posterolateral tract" EXACT [FMA:72616] synonym: "tract of Lissauer" EXACT [] synonym: "tractus posterolateralis" EXACT OMO:0003011 [FMA:72616, FMA:TA] synonym: "zona Lissauer" RELATED OMO:0003011 [NeuroNames:782] synonym: "zone of Lissauer" EXACT [] xref: BAMS:d1 xref: BAMS:dfm xref: BIRNLEX:1267 xref: FMA:72616 xref: NCIT:C33800 xref: neuronames:782 {source="BIRNLEX:1267"} xref: SCTID:369287009 xref: UMLS:C0228587 {source="ncithesaurus:Tract_of_Lissauer", source="BIRNLEX:1267"} xref: Wikipedia:Lissauer's_tract is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata property_value: IAO:0000116 "resolve distinction between Lissauer's tract and the medullary component" xsd:string [Term] id: UBERON:0002650 name: paralaminar part of medial dorsal nucleus namespace: uberon synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160] synonym: "MDPL" BROAD OMO:0003000 [BIRNLEX:1276, NIFSTD:NeuroNames_abbrevSource] synonym: "mediodorsal thalamic nucleus paralaminar part" RELATED [BAMS:MDPL] synonym: "mediodorsal thalamic nucleus, paralaminar part" EXACT [BIRNLEX:1276] synonym: "nucleus medialis dorsalis caudalis (hassler)" EXACT [BIRNLEX:1276] synonym: "nucleus medialis dorsalis thalami, pars multiformis" EXACT [BIRNLEX:1276] synonym: "nucleus medialis dorsalis, pars multiformis" EXACT [BIRNLEX:1276] synonym: "nucleus medialis dorsalis, pars paralaminaris" EXACT [BIRNLEX:1276] synonym: "paralaminar part" RELATED [NeuroNames:313] synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160] synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "paralaminar part of the medial dorsal nucleus" RELATED [NeuroNames:313] synonym: "pars paralaminaris nuclei mediodorsalis thalami" EXACT OMO:0003011 [FMA:62160, FMA:TA] synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160] xref: BAMS:MDPL xref: BIRNLEX:1276 xref: FMA:62160 xref: neuronames:313 {source="BIRNLEX:1276"} xref: UMLS:C0228332 {source="BIRNLEX:1276"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0002651 name: anterior horn of lateral ventricle namespace: uberon def: "Part of the lateral ventricle that extends anteriorly into the frontal lobes, bordered by the head of the caudate nucleus on the lateral side (Adapted from Heimer, 1996)." [BIRNLEX:1279] subset: human_reference_atlas subset: uberon_slim synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520] synonym: "cornu anterius" RELATED OMO:0003011 [Wikipedia:Anterior_horn_of_lateral_ventricle] synonym: "cornu anterius (ventriculi lateralis)" EXACT OMO:0003011 [FMA:74520, FMA:TA] synonym: "cornu anterius ventriculi lateralis" EXACT OMO:0003011 [FMA:74520, FMA:TA] synonym: "cornu frontale (ventriculi lateralis)" EXACT OMO:0003011 [FMA:74520, FMA:TA] synonym: "cornu frontale ventriculi lateralis" EXACT OMO:0003011 [FMA:74520, FMA:TA] synonym: "frontal horn of lateral ventricle" EXACT [FMA:74520] synonym: "ventriculus lateralis, cornu anterius" EXACT OMO:0003011 [FMA:74520, FMA:TA] xref: BAMS:FLV xref: BIRNLEX:1279 xref: DHBA:10597 xref: EMAPA:17770 xref: FMA:74520 xref: NCIT:C32637 xref: neuronames:220 xref: SCTID:279247001 xref: UMLS:C0152281 {source="ncithesaurus:Frontal_Horn_of_the_Lateral_Ventricle"} xref: UMLS:C1281033 {source="BIRNLEX:1279"} xref: Wikipedia:Anterior_horn_of_lateral_ventricle is_a: UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002652 name: posterior median eminence namespace: uberon synonym: "eminentia mediana posterior" RELATED OMO:0003011 [NeuroNames:404] synonym: "PME" BROAD OMO:0003000 [BIRNLEX:1280, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PME xref: BIRNLEX:1280 xref: DHBA:12860 xref: FMA:74875 xref: neuronames:404 {source="BIRNLEX:1280"} xref: UMLS:C0175323 {source="BIRNLEX:1280"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis [Term] id: UBERON:0002653 name: gracile fasciculus of medulla namespace: uberon def: "Part of gracile fasiculus located in the medulla." [BIRNLEX:1282] synonym: "column of Goll" EXACT [] synonym: "fasciculus dorsolateralis gracilis (Golli)" RELATED OMO:0003011 [NeuroNames:790] synonym: "fasciculus gracilis (myelencephali)" RELATED OMO:0003011 [NeuroNames:790] synonym: "fasciculus of goll" EXACT [] synonym: "Goll's tract" EXACT [FMA:72624] synonym: "gracile fascicle (Gall)" RELATED [BIRNLEX:1282] synonym: "gracile fascicle (Goll)" RELATED [NeuroNames:790] synonym: "gracile fascicle of medulla" EXACT [FMA:72624] synonym: "gracile fasciculus of the medulla" RELATED [NeuroNames:790] synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624] synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624] synonym: "tract of Gall" RELATED [] xref: BIRNLEX:1282 xref: FMA:72624 xref: neuronames:790 {source="BIRNLEX:1282"} xref: UMLS:C0228522 {source="BIRNLEX:1282"} is_a: UBERON:0005821 ! gracile fasciculus is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002654 name: parvocellular part of medial dorsal nucleus namespace: uberon synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162] synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162] synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "MDPC" BROAD OMO:0003000 [BIRNLEX:1283, NIFSTD:NeuroNames_abbrevSource] synonym: "mediodorsal thalamic nucleus, pars fasciculosa" EXACT [BIRNLEX:1283] synonym: "nucleus medialis dorsalis fasciculosis (hassler)" EXACT [BIRNLEX:1283] synonym: "nucleus medialis dorsalis nucleus fasciculosis (hassler)" EXACT [BIRNLEX:1283] synonym: "nucleus medialis dorsalis nucleus fasciculosus (Hassler)" RELATED OMO:0003011 [NeuroNames:315] synonym: "nucleus medialis dorsalis, pars parvicellularis" EXACT [BIRNLEX:1283] synonym: "nucleus medialis dorsalis, pars parvocellularis" RELATED OMO:0003011 [NeuroNames:315] synonym: "pars parvocellularis lateralis nuclei mediodorsalis thalami" EXACT OMO:0003011 [FMA:62162, FMA:TA] synonym: "pars principalis nuclei ventralis anterior thalami" EXACT OMO:0003011 [FMA:62162, FMA:TA] synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162] synonym: "parvicellular part of medial dorsal nucleus" EXACT [] synonym: "parvicellular part of the medial dorsal nucleus" RELATED [NeuroNames:315] synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162] xref: BAMS:MDPC xref: BIRNLEX:1283 xref: FMA:62162 xref: HBA:4419 xref: neuronames:315 {source="BIRNLEX:1283"} xref: UMLS:C0228330 {source="BIRNLEX:1283"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="FMA", source="NIFSTD"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0002655 name: body of lateral ventricle namespace: uberon def: "Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996)." [BIRNLEX:1287] subset: human_reference_atlas subset: uberon_slim synonym: "central part of lateral ventricle" EXACT [FMA:83703] synonym: "corpus ventriculi lateralis" EXACT OMO:0003011 [FMA:83703, FMA:TA] synonym: "lateral ventricular body" EXACT [FMA:83703] synonym: "pars centralis (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83703, FMA:TA] synonym: "pars centralis ventriculi lateralis" EXACT OMO:0003011 [FMA:83703, FMA:TA] synonym: "pars centralis ventriculi lateralis" RELATED OMO:0003011 [Wikipedia:Body_of_lateral_ventricle] synonym: "ventriculus lateralis, corpus" EXACT OMO:0003011 [FMA:83703, FMA:TA] synonym: "ventriculus lateralis, pars centralis" EXACT OMO:0003011 [FMA:83703, FMA:TA] xref: BIRNLEX:1287 xref: DHBA:10598 xref: FMA:83703 xref: NCIT:C32218 xref: neuronames:221 xref: SCTID:279246005 xref: UMLS:C0152280 {source="ncithesaurus:Body_of_the_Lateral_Ventricle", source="BIRNLEX:1287"} xref: Wikipedia:Body_of_lateral_ventricle is_a: UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The body of lateral ventricle (cella) extends from the interventricular foramen to the splenium of the corpus callosum. It is an irregularly curved cavity, triangular on transverse section, with a roof, a floor, and a medial wall. The roof is formed by the under surface of the corpus callosum; the floor by the following parts, enumerated in their order of position, from before backward: the caudate nucleus of the corpus striatum, the stria terminalis and the terminal vein, the lateral portion of the upper surface of the thalamus, the choroid plexus, and the lateral part of the fornix; the medial wall is the posterior part of the septum pellucidum, which separates it from the opposite ventricle. [WP,unvetted][Wikipedia:Body_of_lateral_ventricle]." xsd:string {source="Wikipedia:Body_of_lateral_ventricle"} [Term] id: UBERON:0002656 name: periamygdaloid area namespace: uberon synonym: "cortical amygdaloid nucleus" RELATED [BIRNLEX:1291] synonym: "gyrus semilunaris" RELATED OMO:0003011 [NeuroNames:166] synonym: "para-amygdaloid cortex" RELATED [FMA:62485] synonym: "periamygdalar area" RELATED [NeuroNames:166] synonym: "periamygdaloid area" EXACT HUMAN_PREFERRED [BIRNLEX:1291] synonym: "periamygdaloid cortex" RELATED [BIRNLEX:1291, FMA:62485] synonym: "periamygdaloid region" EXACT [FMA:62485] synonym: "periamygdaloid region" RELATED [BIRNLEX:1291] synonym: "posterior amygdalar nucleus" RELATED [BAMS:PA] synonym: "posterior nucleus of the amygdala" RELATED [BAMS:PA] synonym: "regio periamygdalaris" RELATED OMO:0003011 [NeuroNames:166] synonym: "semilunar gyrus" EXACT [FMA:62485] synonym: "semilunar gyrus" RELATED [BIRNLEX:1291] synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485] synonym: "ventral cortical nucleus of amygdala" RELATED [BIRNLEX:1291] xref: BAMS:PA xref: BAMS:PAM xref: BAMS:SLG xref: BIRNLEX:1291 xref: BM:Tel-Cx-PAM xref: DHBA:10373 xref: DHBA:12169 xref: FMA:62485 xref: neuronames:166 {source="BIRNLEX:1291"} xref: SCTID:279214005 xref: UMLS:C0458328 {source="BIRNLEX:1291"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0011300 {source="FMA"} ! gray matter of telencephalon relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus property_value: IAO:0000116 "consider splitting" xsd:string [Term] id: UBERON:0002657 name: posterior parahippocampal gyrus namespace: uberon def: "The posterior parahippocampal gyrus is a portion of the parahippocampal gyrus. It can show deterioration in Alzheimer's disease." [Wikipedia:Posterior_parahippocampal_gyrus] subset: human_reference_atlas synonym: "gyrus parahippocampalis, pars posterior" RELATED OMO:0003011 [NeuroNames:169] synonym: "parahippocampal gyrus (amaral)" EXACT [] synonym: "parahippocampal gyrus (insausti)" EXACT [BIRNLEX:1295] synonym: "parahippocampal gyrus, posterior division" RELATED [http://orcid.org/0000-0001-6755-0259] synonym: "pHp" BROAD OMO:0003000 [FMA:67966, FMA:CMA] xref: BAMS:PPHG xref: BIRNLEX:1295 xref: DHBA:12164 xref: FMA:67966 xref: neuronames:169 {source="BIRNLEX:1295"} xref: UMLS:C0694597 {source="BIRNLEX:1295"} xref: Wikipedia:Posterior_parahippocampal_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002658 name: medial lemniscus of midbrain namespace: uberon def: "Part of medial lemniscus located within the midbrain." [BIRNLEX:1296] synonym: "lemniscus medialis (mesencephali)" RELATED OMO:0003011 [NeuroNames:533] synonym: "medial lemniscus of the midbrain" RELATED [NeuroNames:533] synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic] synonym: "MLMB" BROAD OMO:0003000 [BIRNLEX:1296, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:mlmb xref: BIRNLEX:1296 xref: FMA:72461 xref: neuronames:533 {source="BIRNLEX:1296"} xref: SCTID:361568001 xref: UMLS:C0175406 {source="BIRNLEX:1296"} is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: part_of UBERON:0002623 {source="NIFSTD"} ! cerebral peduncle relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus [Term] id: UBERON:0002659 name: superior medullary velum namespace: uberon def: "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]." [Wikipedia:Superior_medullary_velum] subset: uberon_slim synonym: "anterior medullary velum" EXACT [FMA:74508] synonym: "rostral medullary velum" RELATED [NeuroNames:593] synonym: "velum medullare anterius" RELATED OMO:0003011 [NeuroNames:593] synonym: "velum medullare craniale" RELATED OMO:0003011 [NeuroNames:593] synonym: "velum medullare rostralis" RELATED OMO:0003011 [NeuroNames:593] synonym: "velum medullare superior" RELATED OMO:0003011 [NeuroNames:593] synonym: "velum medullare superius" RELATED OMO:0003011 [Wikipedia:Superior_medullary_velum] xref: BAMS:RMVE xref: BAMS:SMV xref: BAMS:smv xref: BIRNLEX:1300 xref: FMA:74508 xref: neuronames:593 {source="BIRNLEX:1300"} xref: SCTID:369269006 xref: UMLS:C0152284 {source="BIRNLEX:1300"} xref: Wikipedia:Superior_medullary_velum is_a: UBERON:0019291 ! white matter of metencephalon relationship: part_of UBERON:0002037 ! cerebellum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png" xsd:anyURI [Term] id: UBERON:0002660 name: medial longitudinal fasciculus of midbrain namespace: uberon def: "A medial longitudinal fasciculus that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] synonym: "fasciculus longitudinalis medialis (mesencephali)" RELATED OMO:0003011 [NeuroNames:526] synonym: "medial longitudinal fasciculus of the midbrain" RELATED [NeuroNames:526] synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "MLFMB" BROAD OMO:0003000 [BIRNLEX:1302, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:mlfmb xref: BIRNLEX:1302 xref: FMA:72454 xref: neuronames:526 {source="BIRNLEX:1302"} xref: UMLS:C0262284 {source="BIRNLEX:1302"} is_a: UBERON:0002309 ! medial longitudinal fasciculus relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002661 name: superior frontal gyrus namespace: uberon def: "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the 'inflated' surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1303] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "gyrus F1" RELATED OMO:0003011 [NeuroNames:83] synonym: "gyrus frontalis primus" RELATED OMO:0003011 [NeuroNames:83] synonym: "gyrus frontalis superior" RELATED OMO:0003011 [Wikipedia:Superior_frontal_gyrus] synonym: "marginal gyrus" EXACT [FMA:61857] synonym: "superior frontal convolution" EXACT [FMA:61857] xref: BAMS:SFG xref: BIRNLEX:1303 xref: BTO:0004836 xref: DHBA:12115 xref: EFO:0001991 xref: FMA:61857 xref: HBA:4021 xref: NCIT:C33674 xref: neuronames:83 {source="BIRNLEX:1303"} xref: SCTID:279166005 xref: UMLS:C0152296 {source="BIRNLEX:1303", source="ncithesaurus:Superior_Frontal_Convolution"} xref: Wikipedia:Superior_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002662 name: medial pes lemniscus namespace: uberon synonym: "MPL" BROAD OMO:0003000 [BIRNLEX:1310, NIFSTD:NeuroNames_abbrevSource] synonym: "pes lemniscus medialis" RELATED OMO:0003011 [NeuroNames:532] synonym: "superficial pes lemniscus" EXACT [FMA:72460] xref: BAMS:mpl xref: BIRNLEX:1310 xref: FMA:72460 xref: neuronames:532 {source="BIRNLEX:1310"} xref: UMLS:C0175410 {source="BIRNLEX:1310"} is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0016554 ! white matter of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002663 name: septal nuclear complex namespace: uberon def: "Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone)." [BIRNLEX:1313] subset: uberon_slim synonym: "nuclei septales" RELATED OMO:0003011 [Wikipedia:Septal_nuclei] synonym: "parolfactory nuclei" EXACT [FMA:61845] synonym: "septal nuclei" EXACT [FMA:61845] synonym: "septal nucleus" EXACT [MA:0002978] xref: BAMS:SptN xref: BIRNLEX:1313 xref: DHBA:10350 xref: EHDAA2:0004709 xref: EMAPA:35763 xref: FMA:61845 xref: GAID:637 xref: HBA:13002 xref: MA:0002978 xref: MESH:D012686 xref: neuronames:259 xref: UMLS:C0036687 {source="BIRNLEX:1313"} xref: Wikipedia:Septal_nuclei is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0000446 ! septum of telencephalon relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain property_value: UBPROP:0000001 "Any of the groups of neural nuclei situated in the septal region which have afferent and cholinergic efferent connections with a variety of forebrain and brainstem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdala." xsd:string {source="MP:0012682"} property_value: UBPROP:0000001 "The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds & Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted][Wikipedia:Septal_nuclei]." xsd:string {source="Wikipedia:Septal_nuclei"} property_value: UBPROP:0000012 "in NIFSTD this is the mereological sum of the individual complexes - in MA it is the superclass" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0002664 name: lateral part of medial mammillary nucleus namespace: uberon synonym: "intercalated mammillary nucleus" EXACT [FMA:62346] synonym: "intermediate mammillary nucleus" EXACT [FMA:62346] synonym: "lateral mammillary nucleus (gagel)" EXACT [] synonym: "lateral part of the medial mammillary nucleus" RELATED [NeuroNames:416] synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346] synonym: "medial mammillary nucleus lateral part" RELATED [BAMS:ML] synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346] synonym: "MML" BROAD OMO:0003000 [BIRNLEX:1314, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis mamillaris medialis, pars lateralis" RELATED OMO:0003011 [NeuroNames:416] synonym: "nucleus intercalatus corporis mammillaris" RELATED OMO:0003011 [NeuroNames:416] synonym: "nucleus intermedius corpus mamillaris" RELATED OMO:0003011 [NeuroNames:416] xref: BAMS:ML xref: BAMS:MML xref: BIRNLEX:1314 xref: DHBA:10500 xref: DMBA:15731 xref: FMA:62346 xref: HBA:4673 xref: neuronames:416 {source="BIRNLEX:1314"} xref: UMLS:C0694606 {source="BIRNLEX:1314"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucleus [Term] id: UBERON:0002665 name: supracallosal gyrus namespace: uberon subset: uberon_slim synonym: "gyrus supracallosus" RELATED OMO:0003011 [NeuroNames:172] synonym: "hippocampus supracommissuralis" RELATED OMO:0003011 [NeuroNames:172] synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920] synonym: "supracommissural hippocampus" EXACT [FMA:61920] xref: BAMS:HiS xref: BAMS:SCG xref: BAMS:Supracallosal_gyrus xref: BIRNLEX:1316 xref: FMA:61920 xref: neuronames:172 {source="BIRNLEX:1316"} xref: SCTID:369231001 xref: UMLS:C0152333 {source="BIRNLEX:1316"} xref: Wikipedia:Supracallosal_gyrus is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe [Term] id: UBERON:0002666 name: mesencephalic tract of trigeminal nerve namespace: uberon synonym: "me5" BROAD OMO:0003000 [BIRNLEX:1318, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalic root of v" EXACT [] synonym: "mesencephalic tract of the trigeminal nerve" RELATED [NeuroNames:596] synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489] synonym: "midbrain tract of the trigeminal nerve" RELATED [BAMS:mtV] synonym: "tractus mesencephalicus nervi trigeminalis" RELATED OMO:0003011 [NeuroNames:596] synonym: "tractus mesencephalicus nervi trigemini" RELATED OMO:0003011 [NeuroNames:596] synonym: "tractus mesencephalicus trigeminalis" RELATED OMO:0003011 [NeuroNames:596] xref: BAMS:me5 xref: BAMS:mtV xref: BIRNLEX:1318 xref: DHBA:12767 xref: FMA:72489 xref: HBA:265505458 xref: MBA:705 xref: neuronames:596 {source="BIRNLEX:1318"} xref: SCTID:369263007 xref: UMLS:C0228703 {source="BIRNLEX:1318"} is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002667 name: lateral septal nucleus namespace: uberon def: "Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981)." [BIRNLEX:1321] synonym: "lateral parolfactory nucleus" EXACT [FMA:61878] synonym: "lateral septal nucleus (cajal)" EXACT [BIRNLEX:1321] synonym: "lateral septum" EXACT [BIRNLEX:1321] synonym: "lateral septum nucleus" EXACT [BIRNLEX:1321] synonym: "nucleus lateralis septi" RELATED OMO:0003011 [NeuroNames:261] synonym: "nucleus septalis lateralis" RELATED OMO:0003011 [NeuroNames:261] synonym: "nucleus septi lateralis" RELATED OMO:0003011 [NeuroNames:261] xref: BAMS:LS xref: BAMS:SLN xref: BIRNLEX:1321 xref: BM:Tel-Spt-SLN xref: DHBA:10352 xref: EMAPA:35486 xref: FMA:61878 xref: HBA:4303 xref: MBA:242 xref: neuronames:261 {source="BIRNLEX:1321"} xref: UMLS:C0175232 {source="BIRNLEX:1321"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007628 ! lateral septal complex property_value: RO:0002171 UBERON:0001878 {source="ABA"} property_value: RO:0002171 UBERON:0007630 {source="ABA"} [Term] id: UBERON:0002668 name: oculomotor nerve root namespace: uberon def: "Initial segment of the occulomotor nerve as it leaves the midbrain." [BIRNLEX:1335] synonym: "3nf" BROAD OMO:0003000 [BIRNLEX:1323, NIFSTD:NeuroNames_abbrevSource] synonym: "central part of oculomotor nerve" EXACT [FMA:72457] synonym: "fibrae nervi oculomotorii" RELATED OMO:0003011 [NeuroNames:529] synonym: "oculomotor nerve fibers" EXACT [FMA:72457] synonym: "oculomotor nerve tract" RELATED [] synonym: "root of oculomotor nerve" EXACT [FMA:72457] xref: BAMS:3nf xref: BIRNLEX:1323 xref: BIRNLEX:1335 xref: DHBA:12376 xref: DMBA:17736 xref: FMA:72457 xref: neuronames:529 {source="BIRNLEX:1323"} xref: UMLS:C0175408 {source="BIRNLEX:1323"} is_a: UBERON:0006843 ! root of cranial nerve relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: UBPROP:0000012 "todo - determine pattern for central part of nerve vs fibers vs root" xsd:string [Term] id: UBERON:0002669 name: anterior horizontal limb of lateral sulcus namespace: uberon synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760] synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760] synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760] synonym: "anterior ramus of lateral sulcus" RELATED [FMA:83760] synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "horizontal ramus of sylvian fissure" EXACT [] synonym: "ramus anterior horizontalis sulcus lateralis" RELATED OMO:0003011 [NeuroNames:69] synonym: "ramus anterior sulci lateralis cerebri" EXACT OMO:0003011 [FMA:83760, FMA:TA] synonym: "ramus anterior sulcus lateralis" RELATED OMO:0003011 [NeuroNames:69] synonym: "ramus horizontalis fissurae sylvii" RELATED OMO:0003011 [NeuroNames:69] synonym: "sulcus lateralis, ramus anterior" RELATED OMO:0003011 [NeuroNames:69] xref: BAMS:ahls xref: BIRNLEX:1327 xref: FMA:83760 xref: neuronames:69 {source="BIRNLEX:1327"} xref: UMLS:C0262190 {source="BIRNLEX:1327"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0001870 {source="NIFSTD"} ! frontal cortex relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus [Term] id: UBERON:0002670 name: anterior ascending limb of lateral sulcus namespace: uberon synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759] synonym: "anterior ascending limb of the lateral fissure" RELATED [NeuroNames:68] synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759] synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of sylvian fissure" EXACT [] synonym: "middle ramus of lateral fissure" EXACT [FMA:83759] synonym: "ramus anterior ascendens fissurae lateralis" RELATED OMO:0003011 [NeuroNames:68] synonym: "ramus ascendens sulci cerebri lateralis (Sylvii)" RELATED OMO:0003011 [NeuroNames:68] synonym: "ramus ascendens sulci lateralis cerebri" EXACT OMO:0003011 [FMA:83759, FMA:TA] synonym: "ramus ascendens sulcus lateralis" RELATED OMO:0003011 [NeuroNames:68] synonym: "ramus verticalis fissurae sylvii" RELATED OMO:0003011 [NeuroNames:68] synonym: "sulcus lateralis, ramus ascendens" RELATED OMO:0003011 [NeuroNames:68] synonym: "superior branch of lateral fissure" EXACT [FMA:83759] xref: BAMS:aals xref: BIRNLEX:1330 xref: FMA:83759 xref: neuronames:68 {source="BIRNLEX:1330"} xref: UMLS:C0262186 {source="BIRNLEX:1330"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0001870 {source="NIFSTD"} ! frontal cortex relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus [Term] id: UBERON:0002671 name: pallidotegmental fasciculus namespace: uberon synonym: "fasciculus pallido-tegmentalis" RELATED OMO:0003011 [NeuroNames:530] synonym: "fibrae pallidoolivares" RELATED OMO:0003011 [NeuroNames:530] synonym: "pallidotegmental fascicle" RELATED [NeuroNames:530] synonym: "pallidotegmental tract" EXACT [FMA:72458] synonym: "PTF" BROAD OMO:0003000 [BIRNLEX:1331, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:ptf xref: BIRNLEX:1331 xref: DHBA:12078 xref: FMA:72458 xref: MBA:134 xref: neuronames:530 {source="BIRNLEX:1331"} xref: UMLS:C0175407 {source="BIRNLEX:1331"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002672 name: anterior subcentral sulcus namespace: uberon synonym: "anterior subcentral sulcus" RELATED [NeuroNames:73] synonym: "sulcus subcentralis anterior" RELATED OMO:0003011 [NeuroNames:73] xref: BAMS:ascs xref: BIRNLEX:1332 xref: DHBA:146034788 xref: FMA:83765 xref: neuronames:73 {source="BIRNLEX:1332"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0001870 {source="NIFSTD"} ! frontal cortex [Term] id: UBERON:0002673 name: vestibular nuclear complex namespace: uberon def: "Nuclear complex containing the vestibular nuclei." [UBERON:cjm] subset: uberon_slim synonym: "nuclei vestibulares" RELATED OMO:0003011 [Wikipedia:Vestibular_nuclei] synonym: "nuclei vestibulares in medulla oblongata" EXACT OMO:0003011 [FMA:72239, FMA:TA] synonym: "vestibular nuclei" EXACT [FMA:72239] synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239] synonym: "vestibular nucleus" RELATED [GO:0021750] xref: BAMS:Ve xref: BAMS:VNC xref: BIRNLEX:1337 xref: BM:Me-VS xref: BTO:0004368 xref: CALOHA:TS-2078 xref: FMA:72239 xref: GAID:602 xref: HBA:9697 xref: MBA:701 xref: MESH:D014726 xref: neuronames:714 {source="BIRNLEX:1337"} xref: UMLS:C0042600 {source="BIRNLEX:1337"} xref: Wikipedia:Vestibular_nuclei is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001896 {source="ABA", source="FMA", source="NIF"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png" xsd:anyURI property_value: IAO:0000116 "In TA they are grouped in both the pons and medulla; DHBA has 'vestibular nuclei of pons', with LVN and SVN underneath; WP+MA says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF." xsd:string property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} [Term] id: UBERON:0002675 name: diagonal sulcus namespace: uberon synonym: "sulcus diagonalis" RELATED OMO:0003011 [NeuroNames:67] xref: BAMS:dias xref: BIRNLEX:1344 xref: FMA:83758 xref: neuronames:67 {source="BIRNLEX:1344"} xref: UMLS:C0694582 {source="BIRNLEX:1344"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002676 name: ventral supraoptic decussation namespace: uberon def: "The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]." [Wikipedia:Ventral_supraoptic_decussation] subset: uberon_slim synonym: "commissura supraoptica ventralis" EXACT OMO:0003011 [FMA:62052, FMA:TA] synonym: "commissura supraoptica ventralis" RELATED OMO:0003011 [Wikipedia:Ventral_supraoptic_decussation] synonym: "commissure of Gudden" EXACT [BIRNLEX:1347] synonym: "Gudden commissure" EXACT [FMA:62052] synonym: "Gudden's commissure" EXACT [FMA:62052] synonym: "supraoptic commissures, ventral" EXACT [FMA:62052] synonym: "supraoptic commissures, ventral (Gudden)" RELATED [NeuroNames:389] synonym: "ventral supra-optic commissure" EXACT [FMA:62052] synonym: "ventral supraoptic commissure (of Meynert)" EXACT [BIRNLEX:1347] synonym: "ventral supraoptic decussation" EXACT [BIRNLEX:1347] synonym: "ventral supraoptic decussation of Gudden" RELATED [FMA:62052] synonym: "von Gudden's commissure" EXACT [FMA:62052] synonym: "VSOX" BROAD OMO:0003000 [BIRNLEX:1347, NIFSTD:NeuroNames_abbrevSource] synonym: "VSOX" EXACT [BIRNLEX:1347] xref: BAMS:supv xref: BAMS:vsox xref: BIRNLEX:1347 xref: FMA:62052 xref: MBA:833 xref: neuronames:389 {source="BIRNLEX:1347"} xref: UMLS:C0175339 {source="BIRNLEX:1347"} xref: Wikipedia:Ventral_supraoptic_decussation is_a: UBERON:0011590 {source="UBERON"} ! commissure of diencephalon relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI [Term] id: UBERON:0002679 name: anterodorsal nucleus of thalamus namespace: uberon synonym: "AD" BROAD OMO:0003000 [BIRNLEX:1358, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior dorsal thalamic nucleus" EXACT [EMAPA:35129] synonym: "anterodorsal nucleus" EXACT [FMA:62141] synonym: "anterodorsal nucleus of the thalamus" EXACT [BIRNLEX:1358] synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141] synonym: "nucleus anterior dorsalis" EXACT [BIRNLEX:1358] synonym: "nucleus anterior dorsalis thalami" EXACT [BIRNLEX:1358] synonym: "nucleus anterior thalami dorsalis" EXACT [BIRNLEX:1358] synonym: "nucleus anterodorsalis" EXACT [BIRNLEX:1358] synonym: "nucleus anterodorsalis (hassler)" EXACT [BIRNLEX:1358] synonym: "nucleus anterodorsalis of thalamus" RELATED OMO:0003011 [NeuroNames:303] synonym: "nucleus anterodorsalis thalami" EXACT OMO:0003011 [BIRNLEX:1358, FMA:TA] synonym: "nucleus anterosuperior" EXACT [BIRNLEX:1358] synonym: "nucleus thalamicus anterodorsalis" EXACT [BIRNLEX:1358] xref: BAMS:AD xref: BIRNLEX:1358 xref: BM:Die-Th-AD xref: DHBA:10393 xref: DMBA:16420 xref: EMAPA:35129 xref: FMA:62141 xref: HBA:4398 xref: MBA:64 xref: neuronames:303 {source="BIRNLEX:1358"} xref: SCTID:279127002 xref: UMLS:C0228318 {source="BIRNLEX:1358"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002788 {source="FMA", source="NIFSTD"} ! anterior nuclear group property_value: RO:0002171 UBERON:0002681 {source="ABA"} property_value: RO:0002171 UBERON:0002685 {source="ABA"} property_value: RO:0002171 UBERON:0002984 {source="ABA"} [Term] id: UBERON:0002681 name: anteromedial nucleus of thalamus namespace: uberon synonym: "AM" BROAD OMO:0003000 [BIRNLEX:1365, NIFSTD:NeuroNames_abbrevSource] synonym: "anteromedial nucleus" EXACT [FMA:62142] synonym: "anteromedial nucleus of the thalamus" EXACT [BIRNLEX:1365] synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142] synonym: "nucleus anterior medialis" EXACT [BIRNLEX:1365] synonym: "nucleus anterior medialis thalami" EXACT [BIRNLEX:1365] synonym: "nucleus anterior thalami medialis" EXACT [BIRNLEX:1365] synonym: "nucleus anteromedialis" BROAD [BIRNLEX:1365] synonym: "nucleus anteromedialis (hassler)" EXACT [BIRNLEX:1365] synonym: "nucleus anteromedialis thalami" EXACT [BIRNLEX:1365] synonym: "nucleus thalamicus anteromedialis" EXACT [BIRNLEX:1365] xref: BAMS:AM xref: BIRNLEX:1365 xref: BM:Die-AM xref: DHBA:10394 xref: DMBA:16422 xref: FMA:62142 xref: HBA:4396 xref: MBA:127 xref: neuronames:304 {source="BIRNLEX:1365"} xref: SCTID:279128007 xref: UMLS:C0228319 {source="BIRNLEX:1365"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002788 {source="NIFSTD"} ! anterior nuclear group property_value: RO:0002171 UBERON:0002679 {source="ABA"} property_value: RO:0002171 UBERON:0002685 {source="ABA"} property_value: RO:0002171 UBERON:0002984 {source="ABA"} [Term] id: UBERON:0002682 name: abducens nucleus namespace: uberon def: "Nucleus located beneath the floor of the 4th ventricle in the pontine tegmentum, containing motor neurons innervating the lateral rectus muscle of the eye (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533)." [BIRNLEX:1366] subset: uberon_slim subset: vertebrate_core synonym: "abducens motor nuclei" EXACT OMO:0003004 [TAO:0000713] synonym: "abducens motor nucleus" EXACT [ZFA:0000713] synonym: "abducens nerve nucleus" EXACT [FMA:54504] synonym: "abducens nucleus proper" RELATED [NeuroNames:585] synonym: "abducens VI nucleus" EXACT [MA:0001010] synonym: "abducent nucleus" EXACT [FMA:54504] synonym: "motor nucleus VI" EXACT [ZFA:0000713] synonym: "nucleus abducens" RELATED OMO:0003011 [NeuroNames:585] synonym: "nucleus nervi abducentis" EXACT OMO:0003011 [FMA:54504, FMA:TA] synonym: "nucleus nervi abducentis" RELATED OMO:0003011 [Wikipedia:Abducens_nucleus] synonym: "nucleus of abducens nerve" EXACT [FMA:54504] synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504] synonym: "nVI" EXACT [ZFA:0000713] synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504] xref: BAMS:6 xref: BAMS:VI xref: BIRNLEX:1366 xref: BM:Pons-VI xref: DHBA:12418 xref: DMBA:17279 xref: EHDAA2:0004310 xref: EMAPA:35105 xref: EV:0100266 xref: FMA:54504 xref: HBA:9136 xref: MA:0001010 xref: MBA:653 xref: MESH:D065827 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12836 xref: neuronames:585 {source="BIRNLEX:1366"} xref: SCTID:280165008 xref: TAO:0000713 xref: UMLS:C0152407 {source="ncithesaurus:Abducens_Nucleus", source="BIRNLEX:1366"} xref: Wikipedia:Abducens_nucleus xref: ZFA:0000713 is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 {conflicts="ABA", conflicts="ZFA", source="GO", source="MA", source="NIF"} ! pons property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} property_value: UBPROP:0000001 "Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000713", ontology="TAO", source="ISBN:3764351209"} property_value: UBPROP:0000012 "part of medulla oblongata in ABA and ZFA; part of pons in MA and pontine tegmentum in NIF; note that pons/medulla are spatially disjoint in ABA." xsd:string {external_ontology="ABA"} [Term] id: UBERON:0002683 name: rhinal sulcus namespace: uberon def: "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]." [Wikipedia:Rhinal_sulcus] subset: uberon_slim synonym: "fissura rhinalis" EXACT [BIRNLEX:1368] synonym: "fissura rhinalis" RELATED OMO:0003011 [Wikipedia:Rhinal_sulcus] synonym: "rhinal fissuer (Turner, Rezius)" EXACT [BIRNLEX:1368] synonym: "rhinal fissure" EXACT [FMA:83746] synonym: "rhinal fissure (Turner, Rezius)" RELATED [NeuroNames:41] synonym: "RHS" BROAD OMO:0003000 [BIRNLEX:1368, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rhinalis" EXACT [BIRNLEX:1368] synonym: "sulcus rhinalis" RELATED OMO:0003011 [Wikipedia:Rhinal_sulcus] xref: BAMS:rf xref: BAMS:rhs xref: BIRNLEX:1368 xref: BM:Tel-Cx-RS xref: DHBA:10636 xref: FMA:83746 xref: HBA:9383 xref: MBA:1071 xref: neuronames:41 {source="BIRNLEX:1368"} xref: SCTID:279357002 xref: UMLS:C0228254 {source="BIRNLEX:1368"} xref: Wikipedia:Rhinal_sulcus is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gehirn,_basal_-_beschriftet_lat.svg" xsd:anyURI [Term] id: UBERON:0002684 name: nucleus raphe obscurus namespace: uberon def: "The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]." [Wikipedia:Nucleus_raphe_obscurus] subset: uberon_slim synonym: "nucleus raphC) obscurus" RELATED [BAMS:RO] synonym: "nucleus raphes obscurus" EXACT OMO:0003011 [FMA:72585, FMA:TA] synonym: "nucleus raphes obscurus" RELATED OMO:0003011 [Wikipedia:Nucleus_raphe_obscurus] synonym: "obscurus raphe nucleus" EXACT [FMA:72585] synonym: "raphe obscurus nucleus" EXACT [FMA:72585] xref: BAMS:RO xref: BAMS:ROb xref: BIRNLEX:1369 xref: DHBA:12643 xref: EMAPA:37730 {source="MA:th"} xref: FMA:72585 xref: HBA:9646 xref: MA:0002981 xref: MBA:222 xref: MESH:D065849 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:740 {source="BIRNLEX:1369"} xref: UMLS:C0175516 {source="BIRNLEX:1369"} xref: Wikipedia:Nucleus_raphe_obscurus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI property_value: RO:0002171 UBERON:0002156 {source="ABA"} property_value: RO:0002171 UBERON:0002157 {source="ABA"} [Term] id: UBERON:0002685 name: anteroventral nucleus of thalamus namespace: uberon synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143] synonym: "anteroventral nucleus" EXACT [FMA:62143] synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroventral nucleus of the thalamus" EXACT [BIRNLEX:1372] synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143] synonym: "AV" BROAD OMO:0003000 [BIRNLEX:1372, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus anterior principalis (Hassler)" RELATED OMO:0003011 [NeuroNames:305] synonym: "nucleus anterior thalami ventralis" EXACT [BIRNLEX:1372] synonym: "nucleus anterior ventralis" EXACT [BIRNLEX:1372] synonym: "nucleus anteroinferior" EXACT [BIRNLEX:1372] synonym: "nucleus anteroventralis" EXACT [BIRNLEX:1372] synonym: "nucleus anteroventralis thalami" EXACT [BIRNLEX:1372] synonym: "nucleus thalamicus anteroprincipalis" EXACT [BIRNLEX:1372] synonym: "nucleus thalamicus anteroventralis" EXACT [BIRNLEX:1372] synonym: "ventral anterior nucleus of the thalamus" RELATED [BAMS:VA] synonym: "ventroanterior nucleus" RELATED [BAMS:VA] xref: BAMS:ald xref: BAMS:APr xref: BAMS:AV xref: BAMS:VA xref: BIRNLEX:1372 xref: BM:Die-AV xref: DHBA:10395 xref: DMBA:16421 xref: EMAPA:35133 xref: FMA:62143 xref: HBA:4397 xref: MBA:255 xref: neuronames:305 {source="BIRNLEX:1372"} xref: SCTID:279130009 xref: UMLS:C0752050 {source="BIRNLEX:1372"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002788 {source="NIFSTD"} ! anterior nuclear group property_value: RO:0002171 UBERON:0002679 {source="ABA"} property_value: RO:0002171 UBERON:0002681 {source="ABA"} property_value: RO:0002171 UBERON:0002984 {source="ABA"} [Term] id: UBERON:0002686 name: angular gyrus namespace: uberon def: "Part of inferior parietal lobule formed by the cortex surrounding the upturned end of the superior temporal sulcus (Nolte, The Human Brain, 6th ed, 2009, pg 659)." [BIRNLEX:1376] subset: human_reference_atlas subset: uberon_slim synonym: "gyrus angularis" RELATED OMO:0003011 [Wikipedia:Angular_gyrus] synonym: "gyrus parietalis inferior" RELATED OMO:0003011 [NeuroNames:109] synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898] synonym: "prelunate gyrus" RELATED [NeuroNames:109] synonym: "preoccipital gyrus" EXACT [FMA:61898] xref: BAMS:AnG xref: BIRNLEX:1376 xref: DHBA:12136 xref: FMA:61898 xref: HBA:4111 xref: NCIT:C32077 xref: neuronames:109 {source="BIRNLEX:1376"} xref: SCTID:279186009 xref: UMLS:C0152305 {source="ncithesaurus:Angular_Gyrus", source="BIRNLEX:1376"} xref: Wikipedia:Angular_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/86/Surfacegyri.JPG" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002687 name: area X of ventral lateral nucleus namespace: uberon synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "area X" EXACT [FMA:62198] synonym: "area X of Olszewski" EXACT [BIRNLEX:1379] synonym: "nucleus lateralis intermedius mediodorsalis situs ventralis medialis" EXACT [BIRNLEX:1379] synonym: "nucleus ventralis oralis, pars posterior (dewulf)" EXACT [BIRNLEX:1379] synonym: "nucleus ventro-oralis internus (Hassler)" RELATED OMO:0003011 [NeuroNames:342] synonym: "nucleus ventrooralis internus (hassler)" EXACT [BIRNLEX:1379] synonym: "nucleus ventrooralis internus, superior part" EXACT [BIRNLEX:1379] synonym: "X" BROAD OMO:0003000 [BIRNLEX:1379, NIFSTD:NeuroNames_abbrevSource] xref: BIRNLEX:1379 xref: DHBA:12653 xref: FMA:62198 xref: neuronames:342 {source="BIRNLEX:1379"} xref: UMLS:C0262201 {source="BIRNLEX:1379"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001925 {source="FMA"} ! ventral lateral nucleus of thalamus [Term] id: UBERON:0002688 name: supramarginal gyrus namespace: uberon def: "Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1381] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897] synonym: "BA40" RELATED OMO:0003000 [] synonym: "Brodmann area 40" RELATED [Wikipedia:Supramarginal_gyrus] synonym: "gyrus supramarginalis" RELATED OMO:0003011 [NeuroNames:108] synonym: "inferior parietal lobule (krieg)" EXACT [] xref: BAMS:SMG xref: BIRNLEX:1381 xref: DHBA:12135 xref: FMA:61897 xref: HBA:4104 xref: NCIT:C33706 xref: neuronames:108 {source="BIRNLEX:1381"} xref: SCTID:279185008 xref: UMLS:C0228214 {source="ncithesaurus:Supramarginal_Gyrus", source="BIRNLEX:1381"} is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gehirn,_lateral_-_Hauptgyri_beschriftet.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002689 name: supraoptic crest namespace: uberon def: "One of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Organum_vasculosum_of_the_lamina_terminalis] synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] synonym: "organum vasculosum lamina terminalis" EXACT OMO:0003011 [NLXANAT:100313] synonym: "organum vasculosum laminae terminalis" EXACT OMO:0003011 [FMA:62315, FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED OMO:0003011 [NeuroNames:383] synonym: "OVLT" EXACT OMO:0003000 [BIRNLEX:1400] synonym: "prechiasmatic gland" EXACT [BIRNLEX:1400] synonym: "SoC" BROAD OMO:0003000 [BIRNLEX:1400, NIFSTD:NeuroNames_abbrevSource] synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315] synonym: "vascular organ of the lamina terminalis" RELATED [NeuroNames:383] xref: BAMS:OV xref: BAMS:SoC xref: BAMS:VOLT xref: BIRNLEX:1400 xref: BTO:0006268 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12106 xref: DMBA:15582 xref: EMAPA:37742 {source="MA:th"} xref: FMA:62315 xref: MA:0003018 xref: MBA:763 xref: MESH:D066278 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:383 {source="BIRNLEX:1400"} xref: NLXANAT:100313 xref: UMLS:C0175316 {source="BIRNLEX:1400"} xref: Wikipedia:Organum_vasculosum_of_the_lamina_terminalis is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region property_value: RO:0002171 UBERON:0001934 {source="ABA"} property_value: RO:0002171 UBERON:0002034 {source="ABA"} property_value: RO:0002171 UBERON:0002219 {source="ABA"} property_value: RO:0002171 UBERON:0002625 {source="ABA"} property_value: RO:0002171 UBERON:0002690 {source="ABA"} property_value: RO:0002171 UBERON:0007626 {source="ABA"} property_value: UBPROP:0000012 "NIF has two classes here; Editor note: consider relationship to lamina terminalis" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0002690 name: anteroventral periventricular nucleus namespace: uberon synonym: "anterior ventral periventricular nucleus of hypothalamus" RELATED [BAMS:AVPe] synonym: "anteroventral periventricular nucleus of the hypothalamus" RELATED [BAMS:AVPV] synonym: "AVPe" BROAD OMO:0003000 [BIRNLEX:1401, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus periventricularis anteroventralis" RELATED OMO:0003011 [NeuroNames:382] synonym: "ventral periventricular hypothalamic nucleus" RELATED [NeuroNames:382] xref: BAMS:AVPe xref: BAMS:AVPV xref: BIRNLEX:1401 xref: DHBA:13061 xref: FMA:62314 xref: HBA:4550 xref: MBA:272 xref: neuronames:382 {source="BIRNLEX:1401"} xref: UMLS:C0262200 {source="BIRNLEX:1401"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region property_value: RO:0002171 UBERON:0001934 {source="ABA"} property_value: RO:0002171 UBERON:0002034 {source="ABA"} property_value: RO:0002171 UBERON:0002219 {source="ABA"} property_value: RO:0002171 UBERON:0002625 {source="ABA"} property_value: RO:0002171 UBERON:0002689 {source="ABA"} property_value: RO:0002171 UBERON:0007626 {source="ABA"} [Term] id: UBERON:0002691 name: ventral tegmental area namespace: uberon def: "Unpaired midbrain region situated in the ventromedial portion of the reticular formation. The VTA is medial to the substantia nigra and ventral to the red nucleus, and extends caudally from the posterior hypothalamus in the diencephalon. The VTA contains dopamine neurons that project to various limbic and cortical areas and is a critical component of the brain's reward circuitry." [BIRNLEX:1415] subset: efo_slim subset: uberon_slim synonym: "a10a" EXACT OMO:0003011 [FMA:72438, FMA:TA] synonym: "area tegmentalis ventralis" RELATED OMO:0003011 [NeuroNames:521] synonym: "area tegmentalis ventralis (Tsai)" RELATED OMO:0003011 [NeuroNames:521] synonym: "tegmentum ventrale" RELATED [XAO:0004226] synonym: "ventral brain stem" RELATED [XAO:0004226] synonym: "ventral tegmental area (Tsai)" RELATED [NeuroNames:521] synonym: "ventral tegmental area of tsai" EXACT [FMA:72438] synonym: "ventral tegmental nucleus (Rioch)" RELATED [NeuroNames:521] synonym: "ventral tegmental nucleus (tsai)" EXACT [FMA:72438] synonym: "ventral tegmental nucleus of tsai" EXACT [FMA:72438] synonym: "ventromedial mesencephalic tegmentum" RELATED [BIRNLEX:1415] synonym: "VTA" BROAD OMO:0003000 [BIRNLEX:1415, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VTA xref: BIRNLEX:1415 xref: BM:MB-VTA xref: CALOHA:TS-2389 xref: DHBA:12261 xref: EFO:0001935 xref: EMAPA:35913 xref: FMA:72438 xref: GAID:587 xref: HBA:9066 xref: MBA:749 xref: MESH:D017557 xref: neuronames:521 {source="BIRNLEX:1415"} xref: UMLS:C0175405 {source="BIRNLEX:1415"} xref: Wikipedia:Ventral_tegmental_area xref: XAO:0004226 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png" xsd:anyURI property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} property_value: UBPROP:0000001 "Region of the mesencephalon that arises from a small area of the neural plate, spanning the midline immediately adjacent, and being slightly posterior to the dorsal tegmentum area[XAO:0004226, PMID:2351962]." xsd:string {source="XAO:0004226, PMID:2351962"} [Term] id: UBERON:0002692 name: medullary raphe nuclear complex namespace: uberon synonym: "nuclei raphe (myelencephali)" RELATED OMO:0003011 [NeuroNames:738] synonym: "raphe medullae oblongatae" EXACT OMO:0003011 [FMA:68874, FMA:TA] synonym: "raphe nuclei of medulla" EXACT [FMA:68874] synonym: "raphe nuclei of the medulla" RELATED [NeuroNames:738] synonym: "raphe of medulla oblongata" EXACT [FMA:68874] xref: BAMS:RaM xref: BIRNLEX:1420 xref: FMA:68874 xref: HBA:9642 xref: neuronames:738 {source="BIRNLEX:1420"} xref: SCTID:362420006 xref: UMLS:C0175514 {source="BIRNLEX:1420"} is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei [Term] id: UBERON:0002693 name: occipitotemporal sulcus namespace: uberon synonym: "inferior temporal fissure" EXACT [FMA:74518] synonym: "inferior temporal fissure (Crosby)" EXACT [BIRNLEX:1422] synonym: "inferior temporal sulcus (roberts)" EXACT [] synonym: "inferior temporal sulcus (szikla)" EXACT [] synonym: "inferior temporal sulcus-2" EXACT [FMA:74518] synonym: "lateral occipito -temporal sulcus" RELATED [BAMS:lots] synonym: "lateral occipitotemporal sulcus" EXACT [BIRNLEX:1422] synonym: "occipito-temporal sulcus" EXACT [FMA:74518] synonym: "OTS" BROAD OMO:0003000 [BIRNLEX:1422, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus occipitotemporalis" RELATED OMO:0003011 [NeuroNames:55] synonym: "sulcus temporalis inferior (Roberts)" RELATED OMO:0003011 [NeuroNames:55] synonym: "third temporal sulcus" EXACT [FMA:74518] xref: BAMS:lots xref: BAMS:ots xref: BIRNLEX:1422 xref: BM:Tel-Cx-OTS xref: DHBA:10623 xref: FMA:74518 xref: neuronames:55 {source="BIRNLEX:1422"} xref: SCTID:369220009 xref: UMLS:C0228245 {source="BIRNLEX:1422"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus [Term] id: UBERON:0002694 name: anterior hypothalamic commissure namespace: uberon synonym: "AHC" BROAD OMO:0003000 [BIRNLEX:1424, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic commissure (Ganser)" EXACT [FMA:62053] synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053] synonym: "commissura hypothalamica anterior" RELATED OMO:0003011 [NeuroNames:390] synonym: "commissura supraoptica dorsalis pars dorsalis" RELATED OMO:0003011 [NeuroNames:390] synonym: "commissura supraoptica superior pars dorsalis" RELATED OMO:0003011 [NeuroNames:390] xref: BAMS:ahc xref: BIRNLEX:1424 xref: FMA:62053 xref: HBA:4600 xref: neuronames:390 {source="BIRNLEX:1424"} xref: UMLS:C0175337 {source="BIRNLEX:1424"} is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon [Term] id: UBERON:0002695 name: parieto-occipital sulcus namespace: uberon def: "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]." [Wikipedia:Parieto-occipital_sulcus] subset: uberon_slim synonym: "fissura parieto-occipitalis" EXACT [BIRNLEX:1428] synonym: "fissura parietooccipitalis" RELATED OMO:0003011 [Wikipedia:Parieto-occipital_sulcus] synonym: "parieto-occipital fissure" EXACT [FMA:83754] synonym: "parieto-occipital incisure" EXACT [FMA:83754] synonym: "parietooccipital sulcus" EXACT [FMA:83754] synonym: "POS" BROAD OMO:0003000 [BIRNLEX:1428, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior orbital sulcus" RELATED [BAMS:pos] synonym: "sulcus parieto-occipitalis" EXACT [BIRNLEX:1428] synonym: "sulcus parieto-occipitalis medialis" EXACT [BIRNLEX:1428] synonym: "sulcus parietoccipitalis" EXACT [BIRNLEX:1428] synonym: "sulcus parietooccipitalis" EXACT [BIRNLEX:1428] synonym: "sulcus parietooccipitalis" RELATED OMO:0003011 [Wikipedia:Parieto-occipital_sulcus] xref: BAMS:pocs xref: BAMS:pos xref: BIRNLEX:1428 xref: BM:Tel-Cx-POS xref: DHBA:10626 xref: FMA:83754 xref: HBA:9392 xref: NCIT:C33275 xref: ncithesaurus:Parieto-occipital_Sulcus xref: neuronames:52 {source="BIRNLEX:1428"} xref: SCTID:279354009 xref: UMLS:C0228191 {source="BIRNLEX:1428"} xref: UMLS:C1744592 {source="ncithesaurus:Parieto-occipital_Fissure"} xref: Wikipedia:Parieto-occipital_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5d/Gray726_parieto-occipital_sulcus.png" xsd:anyURI property_value: UBPROP:0000012 "two classes in ncit (in general ncit distinguishes between fissue and sulcus, whereas FMA treats these as exact synonyms)" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0002696 name: cuneiform nucleus namespace: uberon synonym: "area parabigeminalis (Mai)" RELATED OMO:0003011 [NeuroNames:502] synonym: "CnF" BROAD OMO:0003000 [BIRNLEX:1430, NIFSTD:NeuroNames_abbrevSource] synonym: "cuneiform nucleus (Castaldi)" RELATED [NeuroNames:502] synonym: "cunieform nucleus" EXACT OMO:0003002 [FMA:231327] synonym: "nucleus cuneiformis" RELATED OMO:0003011 [NeuroNames:502] synonym: "parabigeminal area (mai)" EXACT [] xref: BAMS:CnF xref: BAMS:CUN xref: BIRNLEX:1430 xref: BM:MB-CNF xref: DHBA:12240 xref: DMBA:16777 xref: FMA:231327 xref: FMA:72427 xref: HBA:9020 xref: MBA:616 xref: neuronames:502 {source="BIRNLEX:1430"} xref: UMLS:C0175396 {source="BIRNLEX:1430"} is_a: UBERON:0007415 ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular formation property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} [Term] id: UBERON:0002697 name: dorsal supraoptic decussation namespace: uberon synonym: "commissura supraoptica dorsalis" EXACT OMO:0003011 [FMA:62051, FMA:TA] synonym: "commissura supraoptica dorsalis pars ventralis (Meynert)" RELATED OMO:0003011 [NeuroNames:388] synonym: "commissure of Meynert" EXACT [] synonym: "dorsal supra-optic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure (of ganser)" EXACT [] synonym: "dorsal supraoptic decussation (of ganser)" EXACT [BIRNLEX:1433] synonym: "dorsal supraoptic decussation (of Meynert)" EXACT [BIRNLEX:1433] synonym: "dorsal supraoptic decussation of Meynert" EXACT [] synonym: "DSOX" BROAD OMO:0003000 [BIRNLEX:1433, NIFSTD:NeuroNames_abbrevSource] synonym: "ganser's commissure" EXACT [FMA:62051] synonym: "Meynert's commissure" EXACT [FMA:62051] synonym: "supraoptic commissure of Meynert" EXACT [] synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051] synonym: "supraoptic commissures, dorsal (Meynert)" RELATED [NeuroNames:388] xref: BAMS:dsox xref: BAMS:supd xref: BIRNLEX:1433 xref: FMA:62051 xref: MBA:825 xref: neuronames:388 {source="BIRNLEX:1433"} xref: UMLS:C0175338 {source="BIRNLEX:1433"} is_a: UBERON:0011590 ! commissure of diencephalon relationship: part_of UBERON:0002550 {source="NIFSTD"} ! anterior hypothalamic region [Term] id: UBERON:0002698 name: preoccipital notch namespace: uberon def: "Small indentation on the inferior surface of the cerebral cortex at the border of the occiptal and parietal lobes. It is considered as a landmark because the occipital lobe is located just behind the line that connects that notch with the parietoccipital sulcus (adapted from Wikipedia)." [BIRNLEX:1436] synonym: "incisura parieto-occipitalis" EXACT [BIRNLEX:1436] synonym: "incisura praeoccipitalis" EXACT [BIRNLEX:1436] synonym: "incisura preoccipitalis" EXACT [BIRNLEX:1436] synonym: "occipital notch" EXACT [FMA:83739] synonym: "PON" BROAD OMO:0003000 [BIRNLEX:1436, NIFSTD:NeuroNames_abbrevSource] synonym: "preoccipital incisura" EXACT [FMA:83739] synonym: "preoccipital incisure" EXACT [FMA:83739] xref: BAMS:pon xref: BIRNLEX:1436 xref: DHBA:10645 xref: FMA:83739 xref: HBA:9387 xref: neuronames:54 {source="BIRNLEX:1436"} xref: SCTID:369229005 xref: UMLS:C0228192 {source="BIRNLEX:1436"} xref: Wikipedia:Preoccipital_notch relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002699 name: supraopticohypophysial tract namespace: uberon synonym: "SOH" BROAD OMO:0003000 [BIRNLEX:1440, NIFSTD:NeuroNames_abbrevSource] synonym: "supra-opticohypophysial tract" EXACT [FMA:62054] synonym: "supraopticohypophyseal tract" EXACT [FMA:62054] synonym: "tractus hypothalamico-hypophyseus" RELATED OMO:0003011 [NeuroNames:391] synonym: "tractus hypothalamohypophysialis" RELATED OMO:0003011 [NeuroNames:391] synonym: "tractus supraoptico-hypophyseus" RELATED OMO:0003011 [NeuroNames:391] synonym: "tractus supraopticohypophysialis" EXACT OMO:0003011 [FMA:62054, FMA:TA] xref: BAMS:soh xref: BIRNLEX:1440 xref: FMA:62054 xref: neuronames:391 {source="BIRNLEX:1440"} xref: UMLS:C0228368 {source="BIRNLEX:1440"} is_a: UBERON:0011591 {source="FMA"} ! tract of diencephalon relationship: part_of UBERON:0002550 {source="FMA", source="NIFSTD"} ! anterior hypothalamic region [Term] id: UBERON:0002700 name: subcuneiform nucleus namespace: uberon synonym: "nucleus subcuneiformis" RELATED OMO:0003011 [NeuroNames:503] synonym: "SubCn" BROAD OMO:0003000 [BIRNLEX:1441, NIFSTD:NeuroNames_abbrevSource] synonym: "subcuneiform area of midbrain" EXACT [FMA:72428] xref: BAMS:SubCn xref: BIRNLEX:1441 xref: DHBA:12246 xref: DMBA:16787 xref: FMA:72428 xref: HBA:9022 xref: neuronames:503 {source="BIRNLEX:1441"} xref: UMLS:C0175397 {source="BIRNLEX:1441"} is_a: UBERON:0007415 ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular formation [Term] id: UBERON:0002701 name: anterior median oculomotor nucleus namespace: uberon synonym: "AM3" BROAD OMO:0003000 [BIRNLEX:1445, NIFSTD:Paxinos-Franklin-mouse-2001_abbrevSource] synonym: "anterior medial visceral nucleus" EXACT [FMA:54524] synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423] synonym: "anterior median nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus anteromedialis" BROAD [FMA:54524] synonym: "nucleus anteromedialis" RELATED [FMA:54524] synonym: "nucleus nervi oculomotorii medianus anterior" RELATED OMO:0003011 [NeuroNames:497] synonym: "nucleus visceralis anteromedialis" EXACT OMO:0003011 [FMA:54524, FMA:TA] synonym: "ventral medial nucleus of oculomotor nerve" EXACT [FMA:54524] synonym: "ventral medial visceral nucleus" EXACT [FMA:54524] xref: BAMS:AM3 xref: BIRNLEX:1445 xref: DHBA:12199 xref: FMA:54524 xref: FMA:72423 xref: HBA:9032 xref: neuronames:497 {source="BIRNLEX:1445"} xref: UMLS:C0175382 {source="BIRNLEX:1445"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex [Term] id: UBERON:0002702 name: middle frontal gyrus namespace: uberon def: "Component of the frontal lobe, lateral aspect (Christine Fennema-Notestine)." [BIRNLEX:1451] subset: human_reference_atlas subset: uberon_slim synonym: "gyrus F2" RELATED OMO:0003011 [NeuroNames:84] synonym: "gyrus frontalis medialis" EXACT OMO:0003011 [FMA:61859, FMA:TA] synonym: "gyrus frontalis medialis (Winters)" RELATED OMO:0003011 [NeuroNames:84] synonym: "gyrus frontalis medius" RELATED OMO:0003011 [Wikipedia:Middle_frontal_gyrus] synonym: "gyrus frontalis secundus" RELATED OMO:0003011 [NeuroNames:84] synonym: "intermediate frontal gyrus" EXACT [FMA:61859] synonym: "medial frontal gyrus" EXACT [FMA:61859] synonym: "medial frontal gyrus (Mai)" RELATED [NeuroNames:84] synonym: "middle (medial) frontal gyrus" RELATED [BAMS:MFG] xref: BAMS:MFG xref: BIRNLEX:1451 xref: BTO:0004834 xref: DHBA:12116 xref: FMA:61859 xref: HBA:4028 xref: NCIT:C33118 xref: ncithesaurus:Middle_Frontal_Gyrus xref: neuronames:84 {source="BIRNLEX:1451"} xref: SCTID:362332009 xref: UMLS:C0152297 {source="BIRNLEX:1451"} xref: Wikipedia:Middle_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002703 name: precentral gyrus namespace: uberon def: "Component of the frontal lobe. The appearance and disappearance of the central sulcus is the rostral and caudal boundaries of the precentral gyrus respectively. The medial boundary is specific frontal gyri (superior, middle and inferior) whereas the lateral boundary is the medial bank of the central sulcus (Christine Fennema-Notestine)." [BIRNLEX:1455] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "anterior central gyrus" RELATED [NeuroNames:89] synonym: "gyrus centralis anterior" RELATED OMO:0003011 [NeuroNames:89] synonym: "gyrus praecentralis" RELATED OMO:0003011 [NeuroNames:89] synonym: "motor cortex (Noback)" RELATED [NeuroNames:89] synonym: "precentral convolution" EXACT [FMA:61894] synonym: "prerolandic gyrus" EXACT [FMA:61894] xref: BAMS:PrG xref: BIRNLEX:1455 xref: DHBA:12114 xref: EFO:0001373 xref: FMA:61894 xref: HBA:4010 xref: NCIT:C33393 xref: neuronames:89 {source="BIRNLEX:1455"} xref: UMLS:C0152299 {source="BIRNLEX:1455", source="ncithesaurus:Precentral_Gyrus"} xref: Wikipedia:Precentral_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0001870 ! frontal cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI [Term] id: UBERON:0002704 name: metathalamus namespace: uberon def: "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]." [Wikipedia:Metathalamus] subset: uberon_slim synonym: "corpora geniculata" RELATED OMO:0003011 [Wikipedia:Metathalamus] synonym: "geniculate group of dorsal thalamus" RELATED [BAMS:GENd] synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023] synonym: "geniculate thalamic group" EXACT [MA:0000868] synonym: "geniculate thalamic nuclear group (metathalamus)" RELATED [BAMS:GENd] synonym: "MTh" BROAD OMO:0003000 [BIRNLEX:1461, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei metathalami" EXACT [BIRNLEX:1461] xref: BAMS:GENd xref: BAMS:Metathalamus xref: BAMS:MetThal xref: BAMS:MTh xref: BIRNLEX:1461 xref: EMAPA:35376 xref: EV:0100217 xref: FMA:62023 xref: MA:0000868 xref: MBA:1008 xref: MESH:D005829 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:351 {source="BIRNLEX:1461"} xref: SCTID:361550004 xref: Wikipedia:Metathalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002171 UBERON:0002144 {source="ABA"} property_value: RO:0002171 UBERON:0002776 {source="ABA"} property_value: UBPROP:0000012 "we follow FMA in making this a subtype of nucleus, but in fact it is a group containing two nuclei" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002705 name: midline nuclear group namespace: uberon def: "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]." [Wikipedia:Midline_nuclear_group] subset: human_reference_atlas subset: uberon_slim synonym: "median nuclei of thalamus" EXACT [FMA:62020] synonym: "midline group of the dorsal thalamus" RELATED [BAMS:MTN] synonym: "midline nuclear group" EXACT [FMA:62020] synonym: "midline nuclear group of thalamus" EXACT [FMA:62020] synonym: "midline nuclei of thalamus" EXACT [FMA:62020] synonym: "midline thalamic group" EXACT [MA:0000864] synonym: "midline thalamic nuclear group" RELATED [BAMS:MNG, BAMS:MTN] synonym: "midline thalamic nuclei" RELATED [NeuroNames:306] synonym: "nuclei mediani (thalami)" EXACT [BIRNLEX:1462] synonym: "nuclei mediani thalami" EXACT OMO:0003011 [FMA:62020, FMA:TA] synonym: "nuclei mediani thalami" RELATED OMO:0003011 [Wikipedia:Midline_nuclear_group] synonym: "nucleus mediani thalami" RELATED [BTO:0002454] synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020] xref: BAMS:MidTh xref: BAMS:MNG xref: BAMS:MTN xref: BIRNLEX:1462 xref: BTO:0002454 xref: EMAPA:35573 xref: FMA:62020 xref: MA:0000864 xref: MBA:571 xref: MESH:D020644 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:306 {source="BIRNLEX:1462"} xref: SCTID:279163002 xref: Wikipedia:Midline_nuclear_group is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 {source="ABA-label", source="FMA", source="MA"} ! dorsal thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002706 name: posterior nucleus of hypothalamus namespace: uberon def: "The posterior nucleus of the hypothalamus is one of the many nuclei that make up the hypothalamic region of the brain. Its function is thermoregulation (heating) of the body. Damage or destruction of this nucleus causes hypothermia." [Wikipedia:Posterior_nucleus_of_hypothalamus] synonym: "area hypothalamica posterior" EXACT OMO:0003011 [FMA:62350, FMA:TA] synonym: "area posterior hypothalami" RELATED OMO:0003011 [NeuroNames:420] synonym: "nucleus hypothalamicus posterior" RELATED OMO:0003011 [NeuroNames:420] synonym: "nucleus posterior hypothalami" RELATED [BTO:0002461] synonym: "PH" BROAD OMO:0003000 [BIRNLEX:1463, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior hypothalamic area" EXACT [FMA:62350] synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350] synonym: "posterior nucleus" RELATED [NeuroNames:420] synonym: "posterior nucleus of the hypothalamus" RELATED [NeuroNames:420] xref: BAMS:HPA xref: BAMS:PH xref: BIRNLEX:1463 xref: BM:Die-Hy-HPA xref: BTO:0002461 xref: DHBA:10503 xref: EV:0100235 xref: FMA:62350 xref: HBA:12910 xref: MBA:946 xref: neuronames:420 {source="BIRNLEX:1463"} xref: SCTID:362385002 xref: UMLS:C0228385 {source="BIRNLEX:1463"} xref: Wikipedia:Posterior_nucleus_of_hypothalamus is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002770 {source="NIFSTD"} ! posterior hypothalamic region property_value: RO:0002171 UBERON:0001935 {source="ABA"} property_value: RO:0002171 UBERON:0002035 {source="ABA"} property_value: RO:0002171 UBERON:0002206 {source="ABA"} property_value: RO:0002171 UBERON:0002634 {source="ABA"} [Term] id: UBERON:0002707 name: corticospinal tract namespace: uberon alt_id: UBERON:0004095 def: "The corticospinal fibers that arise from the pyramidal cells within the cerebral cortex layer V of the precentral motor area, the premotor area and the postcentral gyrus, then descend into and through the medulla to form the lateral corticospinal tract and the anterior corticospinal tract." [ISBN:0-683-40008-8, MP:0002878] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "corticospinal fibers" EXACT [NeuroNames:1320] synonym: "fasciculus cerebro-spinalis" EXACT OMO:0003011 [NeuroNames:1320] synonym: "fasciculus pyramidalis" EXACT OMO:0003011 [NeuroNames:800] synonym: "fibrae corticospinales" EXACT OMO:0003011 [NeuroNames:1320] synonym: "pyramid (Willis)" EXACT [NeuroNames:800] synonym: "pyramidal tract" BROAD INCONSISTENT [BIRNLEX:1464, MP:0002878, neuronames:1320] synonym: "tractus cortico-spinalis" EXACT OMO:0003011 [NeuroNames:1320] synonym: "tractus corticospinalis" EXACT OMO:0003011 [NeuroNames:1320, Wikipedia:Corticospinal_tract] synonym: "tractus pyramidalis" EXACT OMO:0003011 [NeuroNames:800] xref: BAMS:P xref: BIRNLEX:1464 xref: BM:CST xref: BM:Me-PyT xref: BTO:0006132 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12776 xref: DMBA:17756 xref: EMAPA:36600 xref: FMA:72634 xref: GAID:702 xref: HBA:265505574 xref: MBA:190 xref: MBA:784 xref: MESH:D011712 xref: neuronames:1320 xref: neuronames:800 {source="BIRNLEX:1464"} xref: SCTID:362325000 xref: UMLS:C0034229 {source="BIRNLEX:1464"} xref: Wikipedia:Corticospinal_tract is_a: UBERON:0001018 {notes="In NIFSTD this is a tract of brain but this leads to issues due to its overlap with the spinal cord"} ! axon tract relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter relationship: part_of UBERON:0025525 ! motor system relationship: part_of UBERON:0036224 ! corticobulbar and corticospinal tracts property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002708 name: posterior periventricular nucleus namespace: uberon synonym: "griseum periventriculare hypothalami" EXACT OMO:0003011 [NeuroNames:419] synonym: "nucleus periventricularis posterior" EXACT [BTO:0002479] synonym: "periventricular hypothalamic nucleus, posterior part" EXACT [NeuroNames:419] synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349] synonym: "posterior paraventricular nucleus" EXACT [BAMS:PVp] synonym: "posterior periventricular hypothalamic nucleus" EXACT [BIRNLEX:1466] synonym: "posterior periventricular nucleus" EXACT [FMA:62349] synonym: "posterior periventricular nucleus of hypothalamus" EXACT [FMA:62349] synonym: "posterior periventricular nucleus of the hypothalamus" EXACT [BAMS:PVp] synonym: "PPe" BROAD OMO:0003000 [BIRNLEX:1466, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PPe xref: BAMS:PVp xref: BIRNLEX:1466 xref: BTO:0002479 xref: DMBA:16441 xref: FMA:62349 xref: MBA:126 xref: neuronames:419 {source="BIRNLEX:1466"} xref: UMLS:C0262317 {source="BIRNLEX:1466"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002770 {source="NIFSTD"} ! posterior hypothalamic region [Term] id: UBERON:0002709 name: posterior nuclear complex of thalamus namespace: uberon def: "Part of thalamus comprising ill defined cellular groups in the caudal thalamus at the meso-diencephalic junction. It is not a homogeneous structure but consists of several distinct cellular groups, including the suprageniculate and limitans nuclei, the magnocellular division of the medial geniculate body, portions of the pulvinar nucleus and an area of mixed cell types intercalated between the ventroposterior nucleus and the nucleus lateral posterior (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 97)." [BIRNLEX:1467] subset: vertebrate_core synonym: "caudal thalamic nucleus" EXACT [TAO:0000325] synonym: "nuclei posteriores thalami" EXACT [BIRNLEX:1467] synonym: "parieto-occipital" RELATED [BAMS:PO] synonym: "PNC" BROAD OMO:0003000 [BIRNLEX:1467, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior complex of thalamus" EXACT [FMA:62024] synonym: "posterior complex of the thalamus" EXACT [BAMS:PO] synonym: "posterior nuclear complex" EXACT [FMA:62024] synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024] synonym: "posterior nuclear group of thalamus" EXACT [FMA:62024] synonym: "posterior nucleus of dorsal thalamus" EXACT [BAMS:Po] synonym: "posterior thalamic nuclear group" EXACT [FMA:62024] synonym: "posterior thalamic nucleus" EXACT [BTO:0002462] xref: BAMS:PNC xref: BAMS:PO xref: BAMS:Po xref: BIRNLEX:1467 xref: BTO:0002462 xref: DHBA:10428 xref: EMAPA:35697 xref: EMAPA:35698 xref: FMA:62024 xref: MBA:1020 xref: neuronames:360 {source="BIRNLEX:1467"} xref: SCTID:424395006 xref: UMLS:C0175298 {source="BIRNLEX:1467"} is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0004703 {source="FMA"} ! dorsal thalamus property_value: IAO:0000116 "ZFA grouping dubious" xsd:string property_value: RO:0002171 UBERON:0002983 {source="ABA"} property_value: RO:0002171 UBERON:0003033 {source="ABA"} [Term] id: UBERON:0002710 name: cingulate sulcus namespace: uberon def: "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]." [Wikipedia:Cingulate_sulcus] subset: uberon_slim synonym: "calloso-marginal sulcus" EXACT [FMA:83748] synonym: "callosomarginal fissure" EXACT [FMA:83748] synonym: "callosomarginal sulcus" EXACT [FMA:83748] synonym: "CGS" BROAD OMO:0003000 [BIRNLEX:1468, NIFSTD:NeuroNames_abbrevSource] synonym: "cingulate fissure" EXACT [FMA:83748] synonym: "sulcus callosomarginalis" EXACT [BIRNLEX:1468] synonym: "sulcus cingulatus" EXACT [BIRNLEX:1468] synonym: "sulcus cinguli" EXACT [BIRNLEX:1468] synonym: "sulcus cinguli" RELATED OMO:0003011 [Wikipedia:Cingulate_sulcus] xref: BAMS:cgs xref: BAMS:cms xref: BIRNLEX:1468 xref: BM:Tel-Cx-CGS xref: DHBA:10615 xref: FMA:83748 xref: HBA:9364 xref: neuronames:43 {source="BIRNLEX:1468"} xref: SCTID:279350000 xref: UMLS:C0228189 {source="BIRNLEX:1468"} xref: Wikipedia:Cingulate_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray727_cingulate_sulcus.svg" xsd:anyURI [Term] id: UBERON:0002711 name: nucleus of posterior commissure namespace: uberon synonym: "Darkshevich nucleus" NARROW [] synonym: "Darkshevich's nucleus" NARROW [] synonym: "nucleus commissura posterior" RELATED OMO:0003011 [NeuroNames:511] synonym: "nucleus commissuralis posterioris" RELATED OMO:0003011 [NeuroNames:511] synonym: "nucleus interstitialis of posterior commissure" RELATED OMO:0003011 [NeuroNames:511] synonym: "nucleus of Darkschewitsch" NARROW [] synonym: "nucleus of the posterior commissure" RELATED [NeuroNames:511] synonym: "PCom" BROAD OMO:0003000 [BIRNLEX:1470, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior commissure nucleus" EXACT [FMA:68463] xref: BAMS:NPC xref: BAMS:PCN xref: BAMS:PCom xref: BIRNLEX:1470 xref: BM:NPC xref: FMA:68463 xref: HBA:9027 xref: MBA:634 xref: neuronames:511 {source="BIRNLEX:1470"} xref: UMLS:C0175386 {source="BIRNLEX:1470"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: IAO:0000116 "in hagfishes, this is the name of one of the two pretectal nuclei[ISBN:0471888893]" xsd:string property_value: IAO:0000116 "in lizards, this is the name of one of the two pretectal nuclei[ISBN:0471888893]" xsd:string property_value: RO:0002171 UBERON:0002565 {source="ABA"} property_value: RO:0002171 UBERON:0002996 {source="ABA"} property_value: RO:0002171 UBERON:0006848 {source="ABA"} [Term] id: UBERON:0002712 name: premammillary nucleus namespace: uberon synonym: "nuclei premamillaris" RELATED OMO:0003011 [NeuroNames:418] synonym: "nucleus premamillaris hypothalami" RELATED OMO:0003011 [NeuroNames:418] synonym: "PMm" BROAD OMO:0003000 [BIRNLEX:1473, NIFSTD:NeuroNames_abbrevSource] synonym: "premamillary nucleus" RELATED [NeuroNames:418] synonym: "premammillary nuclei" EXACT [FMA:62348] xref: BAMS:PM xref: BAMS:PMm xref: BIRNLEX:1473 xref: FMA:62348 xref: HBA:4676 xref: neuronames:418 {source="BIRNLEX:1473"} xref: UMLS:C0262317 {source="BIRNLEX:1473"} is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region [Term] id: UBERON:0002713 name: circular sulcus of insula namespace: uberon def: "A marginal sulcus that is part of a insula [Automatically generated definition]." [OBOL:automatic] synonym: "central lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal sulcus" EXACT [OBOL:automatic] synonym: "circular fissure" EXACT [FMA:83753] synonym: "circular insular sulcus" RELATED [NeuroNames:51] synonym: "circular sulcus" RELATED [NeuroNames:51] synonym: "circular sulcus (of reil)" EXACT [] synonym: "circular sulcus of the insula" RELATED [NeuroNames:51] synonym: "circuminsular fissure" RELATED [NeuroNames:51] synonym: "circuminsular sulcus" EXACT [FMA:83753] synonym: "ciruclar insular sulcus" EXACT [BIRNLEX:1475] synonym: "cortex of island marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal sulcus" EXACT [OBOL:automatic] synonym: "CRS" BROAD OMO:0003000 [BIRNLEX:1475, NIFSTD:NeuroNames_abbrevSource] synonym: "cruciform sulcus" RELATED [BAMS:crs] synonym: "insula lobule marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal sulcus" EXACT [OBOL:automatic] synonym: "insula marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula marginal sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal sulcus" EXACT [OBOL:automatic] synonym: "limiting fissure" EXACT [FMA:83753] synonym: "limiting sulcus" RELATED [NeuroNames:51] synonym: "marginal branch of cingulate sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insula" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of island of reil" EXACT [OBOL:automatic] synonym: "marginal insular sulcus" EXACT [BIRNLEX:1475] synonym: "marginal ramus of cingulate sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insula" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of island of reil" EXACT [OBOL:automatic] synonym: "marginal sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal sulcus of insula" EXACT [FMA:83753] synonym: "marginal sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal sulcus of island of reil" EXACT [OBOL:automatic] synonym: "peri-insular sulcus" RELATED [NeuroNames:51] synonym: "periinsular sulci" RELATED [NeuroNames:51] synonym: "sulcus circularis insulae" EXACT [BIRNLEX:1475] synonym: "sulcus marginalis insulae" EXACT [BIRNLEX:1475] xref: BAMS:crs xref: BAMS:mis xref: BIRNLEX:1475 xref: FMA:83753 xref: HBA:9398 xref: NCIT:C32321 xref: neuronames:51 {source="BIRNLEX:1475"} xref: UMLS:C0228258 {source="BIRNLEX:1475"} xref: Wikipedia:Circular_sulcus_of_insula is_a: UBERON:0002912 ! marginal sulcus relationship: part_of UBERON:0002022 ! insula [Term] id: UBERON:0002714 name: rubrospinal tract namespace: uberon def: "White matter tract arising in red nucleus and projecting to spinal cord ventral horn." [BIRNLEX:1476] subset: uberon_slim synonym: "Monakow's tract" EXACT [FMA:72640] synonym: "rubrospinal tract (Monakow)" EXACT [BIRNLEX:1476] synonym: "tractus rubrospinalis" RELATED OMO:0003011 [Wikipedia:Rubrospinal_tract] xref: BAMS:rs xref: BAMS:rust xref: BIRNLEX:1476 xref: BTO:0006159 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12782 xref: DMBA:17792 xref: FMA:72640 xref: MBA:863 xref: neuronames:806 {source="BIRNLEX:1476"} xref: SCTID:369264001 xref: UMLS:C0152377 {source="BIRNLEX:1476"} xref: Wikipedia:Rubrospinal_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0014649 {source="FMA NIF combined"} ! white matter of medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg" xsd:anyURI [Term] id: UBERON:0002715 name: spinal trigeminal tract of medulla namespace: uberon def: "Part of spinal trigeminal tract located in the medulla." [BIRNLEX:1477] synonym: "spinal trigeminal tract of the medulla" RELATED [NeuroNames:791] synonym: "tractus spinalis nervi trigemini (myelencephali)" RELATED OMO:0003011 [NeuroNames:791] xref: BAMS:sp5m xref: BIRNLEX:1477 xref: FMA:72625 xref: neuronames:791 {source="BIRNLEX:1477"} xref: UMLS:C0262330 {source="BIRNLEX:1477"} is_a: UBERON:0014761 ! spinal trigeminal tract relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002716 name: collateral sulcus namespace: uberon def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [Wikipedia:Collateral_fissure] subset: uberon_slim synonym: "collateral fissure" EXACT [FMA:83751] synonym: "COS" BROAD OMO:0003000 [BIRNLEX:1480, NIFSTD:NeuroNames_abbrevSource] synonym: "fissura collateralis" RELATED OMO:0003011 [Wikipedia:Collateral_fissure] synonym: "sulcus collateralis" EXACT [BIRNLEX:1480] synonym: "sulcus collateralis" RELATED OMO:0003011 [Wikipedia:Collateral_fissure] xref: BAMS:cos xref: BIRNLEX:1480 xref: DHBA:10618 xref: FMA:83751 xref: HBA:9380 xref: NCIT:C32340 xref: ncithesaurus:Collateral_Sulcus xref: neuronames:47 {source="BIRNLEX:1480"} xref: SCTID:279356006 xref: UMLS:C0228226 {source="BIRNLEX:1480"} xref: Wikipedia:Collateral_fissure is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray738.png" xsd:anyURI property_value: UBPROP:0000012 "cnit has two distinct classes; FMA and NIF treat these as exact synonyms." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002717 name: rostral interstitial nucleus of medial longitudinal fasciculus namespace: uberon def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] subset: uberon_slim synonym: "nucleus interstitialis" RELATED OMO:0003011 [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] synonym: "nucleus interstitialis rostralis" RELATED OMO:0003011 [NeuroNames:516] synonym: "RI" BROAD OMO:0003000 [BIRNLEX:1481, NIFSTD:NeuroNames_abbrevSource] synonym: "riMLF" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "rostral interstitial nucleus of MLF" EXACT [FMA:72433] synonym: "rostral interstitial nucleus of the medial longitudinal fasciculus" RELATED [NeuroNames:516] xref: BAMS:RI xref: BIRNLEX:1481 xref: FMA:72433 xref: HBA:9060 xref: MBA:1078 xref: neuronames:516 {source="BIRNLEX:1481"} xref: UMLS:C0175403 {source="BIRNLEX:1481"} xref: Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 {source="FMA", source="NIF"} ! midbrain tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/90/Gray710.png" xsd:anyURI [Term] id: UBERON:0002718 name: solitary tract namespace: uberon def: "The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]." [Wikipedia:Solitary_tract] subset: uberon_slim synonym: "fasciculus solitarius" RELATED OMO:0003011 [NeuroNames:785] synonym: "respiratory bundle of Gierke" EXACT [] synonym: "solitary tract (Stilling)" RELATED [NeuroNames:785] synonym: "tractus solitarius" RELATED OMO:0003011 [NeuroNames:785] synonym: "tractus solitarius medullae oblongatae" RELATED OMO:0003011 [Wikipedia:Solitary_tract] xref: BAMS:sol xref: BAMS:ts xref: BIRNLEX:1483 xref: BM:Me-ST xref: DHBA:12783 xref: DMBA:17796 xref: FMA:72619 xref: HBA:265505626 xref: MBA:237 xref: neuronames:785 {source="BIRNLEX:1483"} xref: UMLS:C0175559 {source="BIRNLEX:1483"} xref: Wikipedia:Solitary_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0014649 ! white matter of medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png" xsd:anyURI [Term] id: UBERON:0002719 name: spino-olivary tract namespace: uberon def: "The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]." [Wikipedia:Spino-olivary_tract] subset: uberon_slim synonym: "helweg's tract" EXACT [FMA:72643] synonym: "spino-olivary pathways" RELATED [NeuroNames:809] synonym: "spino-olivary tracts" RELATED [NeuroNames:809] synonym: "tractus spino-olivaris" RELATED OMO:0003011 [NeuroNames:809] synonym: "tractus spinoolivaris" RELATED OMO:0003011 [Wikipedia:Spino-olivary_tract] xref: BAMS:spo xref: BIRNLEX:1484 xref: DHBA:12793 xref: FMA:72643 xref: MBA:261 xref: neuronames:809 {source="BIRNLEX:1484"} xref: SCTID:362607001 xref: UMLS:C0175562 {source="BIRNLEX:1484"} xref: Wikipedia:Spino-olivary_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0014649 ! white matter of medulla oblongata [Term] id: UBERON:0002720 name: mammillary peduncle namespace: uberon def: "White matter bundle in the posterior hypothalamus containing ascending afferent fibers to the mammillary bodies from the ventral and dorsal tegmental nuclei (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 671)." [BIRNLEX:1486] synonym: "mammillary peduncle (Meynert)" RELATED [NeuroNames:425] synonym: "MPE" BROAD OMO:0003000 [BIRNLEX:1486, NIFSTD:NeuroNames_abbrevSource] synonym: "peduncle of mammillary body" EXACT [FMA:62061] synonym: "pedunculus corporis mamillaris" RELATED OMO:0003011 [NeuroNames:425] synonym: "pedunculus corporis mammillaris" RELATED OMO:0003011 [NeuroNames:425] xref: BAMS:mp xref: BAMS:mpe xref: BIRNLEX:1486 xref: DHBA:266441609 xref: DMBA:17780 xref: FMA:62061 xref: HBA:265505166 xref: MBA:673 xref: neuronames:425 {source="BIRNLEX:1486"} xref: SCTID:369146004 xref: UMLS:C0152358 {source="BIRNLEX:1486"} xref: UMLS:C1289573 {source="BIRNLEX:1486"} is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis is_a: UBERON:0022235 ! peduncle of diencephalon relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region [Term] id: UBERON:0002721 name: lateral sulcus namespace: uberon def: "A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified]." [Wikipedia:Lateral_sulcus] subset: uberon_slim synonym: "fissura lateralis" EXACT [BIRNLEX:1487] synonym: "fissura lateralis cerebri" EXACT [BIRNLEX:1487] synonym: "fissura lateralis cerebri (sylvii)" EXACT [BIRNLEX:1487] synonym: "fissura transversa cerebri" EXACT OMO:0003011 [FMA:77801, FMA:TA] synonym: "fissure of Sylvius" EXACT [] synonym: "lateral cerebral fissure" EXACT [FMA:77801] synonym: "lateral cerebral sulcus" EXACT [FMA:77801] synonym: "lateral fissure" EXACT [FMA:77801] synonym: "lateral fissure of Sylvius" EXACT [] synonym: "LS" BROAD OMO:0003000 [BIRNLEX:1487, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus cerebri lateralis (Sylvii)" RELATED OMO:0003011 [NeuroNames:49] synonym: "sulcus lateralis" EXACT [BIRNLEX:1487] synonym: "sulcus lateralis cerebri" EXACT OMO:0003011 [FMA:77801, FMA:TA, Wikipedia:Lateral_sulcus] synonym: "Sylvian fissure" EXACT [BIRNLEX:1487] synonym: "Sylvian sulcus" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "transverse cerebral fissure" EXACT [FMA:77801] xref: BAMS:lf xref: BAMS:ls xref: BIRNLEX:1487 xref: BM:Tel-Cx-LS xref: DHBA:10621 xref: DHBA:12110 xref: FMA:77801 xref: HBA:9402 xref: NCIT:C32615 xref: neuronames:49 {source="BIRNLEX:1487"} xref: SCTID:369226003 xref: UMLS:C0228187 {source="ncithesaurus:Fissure_of_Sylvius", source="BIRNLEX:1487"} xref: Wikipedia:Lateral_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/4/41/Lateral_sulcus2.png" xsd:anyURI [Term] id: UBERON:0002722 name: trochlear nucleus namespace: uberon def: "Nucleus in the midbrain at the level of the inferior colliculus near the midline, containing the motor neurons giving rise to the trochlear nerve, innervating the contralateral superior oblique extraocular muscle of the eye (Brodal, Neurological Anatomy, 3rd ed, 1981, pg. 533)." [BIRNLEX:1488] subset: uberon_slim subset: vertebrate_core synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518] synonym: "motor nucleus IV" EXACT [ZFA:0000450] synonym: "nIV" EXACT [ZFA:0000450] synonym: "nucleus nervi trochlearis" EXACT OMO:0003011 [FMA:54518, FMA:TA] synonym: "nucleus nervi trochlearis" RELATED OMO:0003011 [Wikipedia:Trochlear_nucleus] synonym: "nucleus of trochlear nerve" EXACT [FMA:54518] synonym: "trochlear IV nucleus" EXACT [MA:0001075] synonym: "trochlear motor nucleus" EXACT [ZFA:0000450] xref: BAMS:4 xref: BAMS:4N xref: BAMS:IV xref: BIRNLEX:1488 xref: BM:MB-IV xref: DHBA:12206 xref: DMBA:16903 xref: EMAPA:35886 xref: EV:0100251 xref: FMA:54518 xref: HBA:9063 xref: MA:0001075 xref: MBA:115 xref: neuronames:513 {source="BIRNLEX:1488"} xref: SCTID:280163001 xref: TAO:0000450 xref: UMLS:C0152406 {source="BIRNLEX:1488"} xref: Wikipedia:Trochlear_nucleus xref: ZFA:0000450 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png" xsd:anyURI property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} [Term] id: UBERON:0002723 name: mammillary princeps fasciculus namespace: uberon synonym: "fasciculus mamillaris" RELATED OMO:0003011 [NeuroNames:422] synonym: "fasciculus mamillaris princeps" RELATED OMO:0003011 [NeuroNames:422] synonym: "fasciculus mammillaris princeps" RELATED OMO:0003011 [NeuroNames:422] synonym: "MPR" BROAD OMO:0003000 [BIRNLEX:1492, NIFSTD:NeuroNames_abbrevSource] synonym: "principal mammillary fasciculus" EXACT [FMA:62057] synonym: "principal mammillary tract" EXACT [BIRNLEX:1492] synonym: "principal mammillary tract (Kvlliker)" RELATED [NeuroNames:422] synonym: "principle mamillary fasciculus" EXACT [FMA:62057] xref: BAMS:mpr xref: BAMS:pm xref: BIRNLEX:1492 xref: FMA:62057 xref: MBA:753 xref: neuronames:422 {source="BIRNLEX:1492"} xref: UMLS:C0175331 {source="BIRNLEX:1492"} is_a: UBERON:0011591 {source="FMA"} ! tract of diencephalon relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region [Term] id: UBERON:0002724 name: limen of insula namespace: uberon def: "The anterior basal part of the insular cortex, which separates the lateral surface of the insula from the anterior perforated substance (Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 80)." [BIRNLEX:1493, https://github.com/obophenotype/uberon/issues/1279] synonym: "ambient gyrus" RELATED [NeuroNames:2072] synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266] synonym: "gyrus ambiens" RELATED [NeuroNames:2072] synonym: "gyrus ambiens (Noback)" EXACT [BIRNLEX:1493] synonym: "insula limen" EXACT [FMA:75266] synonym: "limen insula" RELATED [NeuroNames:50] synonym: "limen insulae" EXACT [BIRNLEX:1493] synonym: "limen of the insula" RELATED [NeuroNames:50] synonym: "LMI" BROAD OMO:0003000 [BIRNLEX:1493, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:lmi xref: BIRNLEX:1493 xref: DHBA:12179 xref: FMA:75266 xref: neuronames:50 {source="BIRNLEX:1493"} xref: SCTID:369215009 xref: UMLS:C0228263 {source="BIRNLEX:1493"} is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002022 ! insula [Term] id: UBERON:0002726 name: cervical spinal cord namespace: uberon def: "A spinal cord segment that adjacent_to a cervical region." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical segment of spinal cord" EXACT [FMA:71166] synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166] synonym: "cervical spinal cord" EXACT [FMA:71166] synonym: "pars cervicalis medullae spinalis" EXACT OMO:0003011 [FMA:71166, FMA:TA] synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT OMO:0003011 [FMA:71166, FMA:TA] xref: BIRNLEX:1499 xref: FMA:71166 xref: MA:0003081 xref: MESH:D066193 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12892 xref: neuronames:1654 xref: SCTID:180960003 xref: UMLS:C0581619 {source="BIRNLEX:1499", source="ncithesaurus:Cervical_Spinal_Cord"} xref: UMLS:C1278837 {source="BIRNLEX:1499"} is_a: UBERON:0005844 ! spinal cord segment property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002727 name: medial medullary lamina of globus pallidus namespace: uberon def: "Thin sheet of white matter dividing the external and internal segments of the globus pallidus in primates." [BIRNLEX:1501] synonym: "globus pallidus, lamina medullaris interna" RELATED OMO:0003011 [NeuroNames:235] synonym: "inner medullary lamina" EXACT [FMA:62470] synonym: "internal medullary l. of corpus striatum" RELATED [BTO:0002251] synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470] synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470] synonym: "l. medullaris interna corporis striati" RELATED [BTO:0002251] synonym: "lamella pallidi interna" RELATED OMO:0003011 [NeuroNames:235] synonym: "lamina medullaris interna corporis striati" EXACT OMO:0003011 [FMA:62470, FMA:TA] synonym: "lamina medullaris interna pallidi" RELATED OMO:0003011 [NeuroNames:235] synonym: "lamina medullaris medialis" RELATED OMO:0003011 [NeuroNames:235] synonym: "lamina medullaris medialis corporis striati" EXACT OMO:0003011 [FMA:62470, FMA:TA] synonym: "lamina pallidi interna" RELATED OMO:0003011 [NeuroNames:235] synonym: "medial medullary lamina" EXACT [FMA:62470] synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "medial medullary lamina of globus pallidus" EXACT [FMA:62470] synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470] synonym: "medial medullary lamina of the globus pallidus" RELATED [BAMS:mml] synonym: "medial medullary stria" EXACT [FMA:62470] synonym: "medial medullary stria of corpus striatum" RELATED [BTO:0002251] xref: BAMS:mml xref: BIRNLEX:1501 xref: BTO:0002251 xref: DHBA:12062 xref: FMA:62470 xref: HBA:265505122 xref: neuronames:235 {source="BIRNLEX:1501"} xref: SCTID:369205003 xref: UMLS:C0152340 {source="BIRNLEX:1501"} is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere relationship: part_of UBERON:0001875 {source="FMA", source="NIFSTD"} ! globus pallidus [Term] id: UBERON:0002728 name: entorhinal cortex namespace: uberon def: "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)." [BIRNLEX:1508, Wikipedia:Entorhinal_cortex] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "area entorhinalis (28,34)" RELATED OMO:0003011 [NeuroNames:168] synonym: "area entorhinalis ventralis et dorsalis" RELATED OMO:0003011 [NeuroNames:168] synonym: "Brodmann's area 28" RELATED [BTO:0002650] synonym: "cortex entorhinalis" RELATED OMO:0003011 [NeuroNames:168] synonym: "entorhinal area" EXACT [ABA:ENT, BTO:0002650, FMA:72356] synonym: "entorhinal cortex" RELATED INCONSISTENT [BIRNLEX:1508] xref: BAMS:ENT xref: BAMS:Ent xref: BIRNLEX:1508 xref: BM:Tel-Cx-ENT xref: BTO:0002650 xref: DHBA:10317 xref: DMBA:16102 xref: EFO:0001920 xref: EMAPA:35313 xref: FMA:72356 xref: GAID:636 xref: MA:0003117 xref: MBA:909 xref: MESH:D018728 xref: NCIT:C97338 xref: neuronames:168 {source="BIRNLEX:1508"} xref: PBA:294022158 xref: SCTID:369099007 xref: UMLS:C0175196 {source="ncithesaurus:Entorhinal_Cortex", source="BIRNLEX:1508"} xref: Wikipedia:Entorhinal_cortex relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus relationship: part_of UBERON:0004725 {source="BTO"} ! piriform cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray-Brodman-Entorhinal_Cortex_EC_.png" xsd:anyURI property_value: IAO:0000116 "TODO - check area vs complex. MBA:909 this is part of the hippocampal formation via retrohippocampal region" xsd:string property_value: RO:0002171 UBERON:0001953 {source="ABA"} property_value: RO:0002171 UBERON:0002191 {source="ABA"} property_value: RO:0002171 UBERON:0004683 {source="ABA"} property_value: UBPROP:0000008 "In primates it is found on the medial surface of the temporal lobe, partially bounded ventrolaterally by the collateral sulcus in the human and by the rhinal sulcus in the macaque. It is subdivided on the basis of internal structure into eight parts in the human ( Insausti-2004 ),and seven parts in the macaque ( Paxinos-2009a ). In the rat and mouse it is divided into a lateral part of the entorhinal area and a medial part of the entorhinal area; the latter is further divided into dorsal and ventral zones to produce three subdivisions in the rodent ( Swanson-2004 )" xsd:string [Term] id: UBERON:0002729 name: claustral amygdaloid area namespace: uberon synonym: "area claustralis amygdalae" RELATED OMO:0003011 [NeuroNames:251] synonym: "claustral amygdalar area" RELATED [NeuroNames:251] synonym: "claustrum diffusa" EXACT [FMA:61869] synonym: "claustrum parvum" EXACT [FMA:61869] synonym: "ventral claustrum" EXACT [FMA:61869] synonym: "ventral portion of claustrum" EXACT [FMA:61869] xref: BAMS:ClA xref: BAMS:VCl xref: BIRNLEX:1515 xref: DHBA:10348 xref: FMA:61869 xref: neuronames:251 {source="BIRNLEX:1515"} xref: UMLS:C0262214 {source="BIRNLEX:1515"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001876 {source="FMA"} ! amygdala relationship: part_of UBERON:0006098 {source="NIF"} ! basal nuclear complex [Term] id: UBERON:0002731 name: vestibulocochlear nerve root namespace: uberon def: "Either of the two roots that come of the vestibulocochlear nerve." [http://orcid.org/0000-0002-6601-2165] synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499] synonym: "fibrae nervi statoacustici" EXACT OMO:0003011 [FMA:72499, FMA:TA] synonym: "root of vestibulocochlear nerve" EXACT [DHBA:12868] synonym: "statoacoustic nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499] synonym: "vestibulocochlear nerve tract" EXACT [FMA:72499] xref: BAMS:8nf xref: BIRNLEX:1519 xref: BIRNLEX:1636 xref: DHBA:12868 xref: DMBA:17746 xref: FMA:72499 xref: neuronames:605 is_a: UBERON:0006843 ! root of cranial nerve relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002732 name: longitudinal pontine fibers namespace: uberon synonym: "corticofugal fibers" RELATED [NeuroNames:618] synonym: "fasiculii longitudinales pyramidales" RELATED OMO:0003011 [NeuroNames:618] synonym: "fibrae pontis longitudinales" EXACT OMO:0003011 [FMA:72513, FMA:TA] synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513] synonym: "longitudinal pontine fibers" EXACT [FMA:72513] synonym: "longitudinal pontine fibres" EXACT [FMA:72513] synonym: "longitudinal pontine tract" EXACT [FMA:72513] xref: BAMS:lfp xref: BAMS:lp xref: BIRNLEX:1523 xref: DHBA:12762 xref: FMA:72513 xref: HBA:265505502 xref: neuronames:618 {source="BIRNLEX:1523"} xref: SCTID:361544009 xref: UMLS:C0228450 {source="BIRNLEX:1523"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0002316 ! white matter relationship: part_of UBERON:0002567 {source="NIFSTD"} ! basal part of pons [Term] id: UBERON:0002733 name: intralaminar nuclear group namespace: uberon def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [Wikipedia:Intralaminar_thalamic_nuclei] subset: uberon_slim synonym: "ILG" BROAD OMO:0003000 [BIRNLEX:1530, NIFSTD:NeuroNames_abbrevSource] synonym: "intralaminar group of the dorsal thalamus" RELATED [BAMS:ILM] synonym: "intralaminar nuclear complex" EXACT [DHBA:ILN] synonym: "intralaminar nuclear group" EXACT [FMA:62021] synonym: "intralaminar nuclear group of thalamus" EXACT [FMA:62021] synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021] synonym: "intralaminar nuclei of the dorsal thalamus" RELATED [BAMS:ILM] synonym: "intralaminar thalamic nuclear group" RELATED [BAMS:ILM, BAMS:ING] synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021] synonym: "nonspecific thalamic system" EXACT [FMA:62021] synonym: "nuclei intralaminares (thalami)" EXACT [BIRNLEX:1530] synonym: "nuclei intralaminares thalami" EXACT OMO:0003011 [FMA:62021, FMA:TA] xref: BAMS:ILG xref: BAMS:ILM xref: BAMS:ING xref: BIRNLEX:1530 xref: DHBA:10442 xref: EMAPA:35445 xref: FMA:62021 xref: GAID:660 xref: MA:0000871 xref: MBA:51 xref: MESH:D020646 xref: neuronames:317 {source="BIRNLEX:1530"} xref: SCTID:279159009 xref: Wikipedia:Intralaminar_thalamic_nuclei is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 {source="FMA"} ! dorsal thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Thalmus.png" xsd:anyURI property_value: RO:0002171 UBERON:0001899 {source="ABA"} property_value: RO:0002171 UBERON:0001903 {source="ABA"} property_value: RO:0002171 UBERON:0002736 {source="ABA"} [Term] id: UBERON:0002734 name: superior temporal sulcus namespace: uberon def: "The superior temporal sulcus is the sulcus separating the superior temporal gyrus from the middle temporal gyrus in the temporal lobe of the brain. The superior temporal sulcus is the first sulcus inferior to the lateral fissure. It is involved in the perception of where others are gazing and is thus important in determining where others' emotions are being directed. It is also involved in the perception of biological motion." [Wikipedia:Superior_temporal_sulcus] synonym: "parallel sulcus" EXACT [FMA:83783] synonym: "STS" BROAD OMO:0003000 [BIRNLEX:1534, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus t1" EXACT [FMA:83783] synonym: "sulcus temporalis primus" RELATED OMO:0003011 [NeuroNames:129] synonym: "sulcus temporalis superior" RELATED OMO:0003011 [NeuroNames:129] synonym: "superior temporal fissure" EXACT [FMA:83783] xref: BAMS:sts xref: BIRNLEX:1534 xref: BM:Tel-Cx-STS xref: DHBA:10629 xref: FMA:83783 xref: HBA:9378 xref: NCIT:C33700 xref: neuronames:129 {source="BIRNLEX:1534"} xref: SCTID:279344005 xref: UMLS:C0228237 {source="BIRNLEX:1534", source="ncithesaurus:Superior_Temporal_Sulcus"} xref: Wikipedia:Superior_temporal_sulcus is_a: UBERON:0014687 ! temporal sulcus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002735 name: transverse pontine fibers namespace: uberon synonym: "fibrae pontis superficiales" RELATED OMO:0003011 [NeuroNames:619] synonym: "fibrae pontis transversae" EXACT OMO:0003011 [FMA:72514, FMA:TA] synonym: "fibrae transversae superficiales pontis" RELATED OMO:0003011 [NeuroNames:619] synonym: "superficial transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse fibers of the pons" RELATED [BAMS:tfp] synonym: "transverse pontine fibers" EXACT [FMA:72514] synonym: "transverse pontine fibres" EXACT [FMA:72514] synonym: "transverse pontine tract" EXACT [FMA:72514] xref: BAMS:tfp xref: BAMS:tpf xref: BIRNLEX:1535 xref: DHBA:12795 xref: FMA:72514 xref: neuronames:619 {source="BIRNLEX:1535"} xref: SCTID:79836003 xref: UMLS:C0228446 {source="BIRNLEX:1535"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0002316 ! white matter relationship: part_of UBERON:0002567 {source="NIFSTD"} ! basal part of pons [Term] id: UBERON:0002736 name: lateral nuclear group of thalamus namespace: uberon def: "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]." [Wikipedia:Lateral_nuclear_group] subset: uberon_slim synonym: "lateral group of nuclei" EXACT [HBA:DTL] synonym: "lateral group of the dorsal thalamus" EXACT [BIRNLEX:1537] synonym: "lateral nuclear group" EXACT [FMA:62174] synonym: "lateral nuclear group of dorsal thalamus" EXACT [] synonym: "lateral nuclear group of thalamus" EXACT [FMA:62174] synonym: "lateral nucleus of thalamus" EXACT [FMA:62174] synonym: "lateral thalamic group" EXACT [MA:0000862] synonym: "lateral thalamic nuclear group" RELATED [BAMS:LAT] synonym: "lateral thalamic nuclear region" RELATED [BAMS:LTh] synonym: "lateral thalamic nuclei" EXACT [FMA:62174] synonym: "lateral thalamic nucleus" EXACT [BIRNLEX:1537] synonym: "LNG" BROAD OMO:0003000 [BIRNLEX:1537, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei laterales thalami" EXACT [BIRNLEX:1537] synonym: "nucleus lateralis thalami" EXACT [BIRNLEX:1537] xref: BAMS:LAT xref: BAMS:LNG xref: BAMS:LTh xref: BIRNLEX:1537 xref: CALOHA:TS-2028 xref: EMAPA:35487 xref: EV:0100210 xref: FMA:62174 xref: GAID:661 xref: HBA:12923 xref: MA:0000862 xref: MBA:138 xref: MESH:D020647 xref: neuronames:325 {source="BIRNLEX:1537"} xref: SCTID:279126006 xref: Wikipedia:Lateral_nuclear_group is_a: UBERON:0000125 {source="FMA"} ! neural nucleus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002171 UBERON:0001899 {source="ABA"} property_value: RO:0002171 UBERON:0001903 {source="ABA"} property_value: RO:0002171 UBERON:0002733 {source="ABA"} [Term] id: UBERON:0002737 name: lateral inferior limiting sulcus namespace: uberon synonym: "sulcus limitans inferior lateralis" RELATED OMO:0003011 [NeuroNames:828] xref: BAMS:lils xref: BIRNLEX:1540 xref: FMA:74523 xref: neuronames:828 {source="BIRNLEX:1540"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus [Term] id: UBERON:0002738 name: isthmus of cingulate gyrus namespace: uberon def: "Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine)." [BIRNLEX:1541] subset: human_reference_atlas synonym: "cingulate gyrus isthmus" EXACT [FMA:62502] synonym: "isthmus cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cingulatus" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus of cingulate cortex" RELATED [BIRNLEX:1541] synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502] synonym: "isthmus of gyrus fornicatus" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus of limbic lobe" EXACT [FMA:62502] synonym: "isthmus of the cingulate gyrus" RELATED [NeuroNames:163] synonym: "isthmus-2" RELATED OMO:0003011 [NeuroNames:163] xref: BAMS:ICG xref: BAMS:ICgG xref: BIRNLEX:1541 xref: FMA:62502 xref: neuronames:163 {source="BIRNLEX:1541"} xref: UMLS:C0175192 {source="BIRNLEX:1541"} xref: Wikipedia:Isthmus_of_cingulate_gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002739 name: medial dorsal nucleus of thalamus namespace: uberon def: "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Göttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]." [Wikipedia:Medial_dorsal_nucleus] comment: Editor node: consider generic medial nuclear group and adding medioventral as sibling of this subset: human_reference_atlas subset: uberon_slim synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156] synonym: "dorsal thalamus medial division" RELATED [BAMS:MED] synonym: "dorsomedial nuclear group" BROAD [FMA:62156] synonym: "dorsomedial nucleus" BROAD [FMA:62156] synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156] synonym: "medial dorsal nucleus" BROAD [FMA:62156] synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156] synonym: "medial dorsal thalamic nucleus" EXACT [BIRNLEX:1543] synonym: "medial group of the dorsal thalamus" RELATED [BAMS:MED] synonym: "medial nuclear group" BROAD [FMA:62156] synonym: "medial nuclear group of thalamus" EXACT [FMA:62156] synonym: "medial thalamic nuclear group" RELATED [BAMS:MED] synonym: "medial thalamic nuclei" BROAD [FMA:62156] synonym: "medial thalamic nucleus" BROAD [FMA:62156] synonym: "mediodorsal nucleus" BROAD [FMA:62156] synonym: "mediodorsal nucleus of thalamus" EXACT [DHB:MD] synonym: "mediodorsal nucleus of the thalamus" RELATED [NeuroNames:312] synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156] synonym: "nuclei mediales (thalami)" RELATED OMO:0003011 [NeuroNames:312] synonym: "nucleus dorsomedialis thalami" EXACT [BIRNLEX:1543] synonym: "nucleus medialis dorsalis" BROAD [BIRNLEX:1543] synonym: "nucleus medialis dorsalis (Hassler)" RELATED OMO:0003011 [NeuroNames:312] synonym: "nucleus medialis dorsalis thalami" RELATED OMO:0003011 [NeuroNames:312] synonym: "nucleus mediodorsalis thalami" RELATED OMO:0003011 [BTO:0002453, Wikipedia:Medial_dorsal_nucleus] synonym: "nucleus thalamicus mediodorsalis" RELATED OMO:0003011 [NeuroNames:312] xref: BAMS:MD xref: BAMS:MED xref: BAMS:MTh xref: BIRNLEX:1543 xref: BM:Die-Th-MD xref: BTO:0002453 xref: DHBA:10398 xref: EMAPA:35296 xref: EV:0100200 xref: FMA:62156 xref: GAID:663 xref: HBA:4401 xref: MA:0000863 xref: MBA:362 xref: MESH:D020645 xref: NCIT:C32480 xref: neuronames:312 {source="BIRNLEX:1543"} xref: SCTID:279149008 xref: UMLS:C0228329 {source="ncithesaurus:Dorsomedial_Nucleus_of_the_Thalamus"} xref: Wikipedia:Medial_dorsal_nucleus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 {source="FMA"} ! dorsal thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002171 UBERON:0003031 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002740 name: posterior cingulate gyrus namespace: uberon def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [Wikipedia:Posterior_cingulate_gyrus] subset: human_reference_atlas subset: uberon_slim synonym: "cGp" BROAD OMO:0003000 [FMA:61924, FMA:CMA] synonym: "gyrus cinguli posterior" RELATED OMO:0003011 [NeuroNames:162] synonym: "gyrus limbicus posterior" RELATED OMO:0003011 [NeuroNames:162] synonym: "PCgG" BROAD OMO:0003000 [BIRNLEX:1546, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior cingulate" RELATED [NeuroNames:162] xref: BAMS:PCgG xref: BIRNLEX:1546 xref: FMA:61924 xref: neuronames:162 {source="BIRNLEX:1546"} xref: UMLS:C0175191 {source="BIRNLEX:1546"} xref: Wikipedia:Posterior_cingulate_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002741 name: diagonal band of Broca namespace: uberon def: "A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala." [BIRNLEX:1551] subset: uberon_slim synonym: "band of Broca" RELATED [BTO:0002445] synonym: "bandaletta diagonalis (Broca)" RELATED [BTO:0002445] synonym: "bandeletta diagonalis" RELATED OMO:0003011 [NeuroNames:285] synonym: "broca's diagonal band" EXACT [FMA:61973] synonym: "broca's diagonal gyrus" EXACT [FMA:61973] synonym: "diagonal band" EXACT [FMA:61973] synonym: "diagonal band of Broca" EXACT [] synonym: "diagonal band(Broca)" RELATED [BAMS:db] synonym: "diagonal gyrus" EXACT [FMA:61973] synonym: "fasciculus diagonalis Brocae" RELATED OMO:0003011 [NeuroNames:285] synonym: "fasciculus olfactorius" RELATED OMO:0003011 [NeuroNames:285] synonym: "fasciculus olfactorius (hippocampi)" RELATED OMO:0003011 [NeuroNames:285] synonym: "fasciculus olfactorius cornu Ammonis" RELATED OMO:0003011 [NeuroNames:285] synonym: "fasciculus septo-amygdalicus" RELATED OMO:0003011 [NeuroNames:285] synonym: "gyrus diagonalis" RELATED OMO:0003011 [NeuroNames:285] synonym: "gyrus diagonalis rhinencephli" RELATED OMO:0003011 [NeuroNames:285] synonym: "olfactory fasciculus" EXACT [FMA:61973] synonym: "olfactory radiations of Zuckerkandl" EXACT [] synonym: "stria diagonalis" RELATED OMO:0003011 [BTO:0002445, Wikipedia:Diagonal_band_of_Broca] synonym: "stria diagonalis (Broca)" RELATED [BTO:0002445] xref: BAMS:db xref: BIRNLEX:1551 xref: BTO:0002445 xref: DHBA:12034 xref: FMA:61973 xref: GAID:684 xref: MESH:D020667 xref: neuronames:285 {source="BIRNLEX:1551"} xref: UMLS:C0175226 {source="BIRNLEX:1551"} xref: Wikipedia:Diagonal_band_of_Broca is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png" xsd:anyURI [Term] id: UBERON:0002742 name: lamina of septum pellucidum namespace: uberon def: "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy." [Wikipedia:Septum_pellucidum#Layers] subset: pheno_slim synonym: "lamina of the septum pellucidum" RELATED [NeuroNames:258] synonym: "lamina septi pellucidi" RELATED OMO:0003011 [NeuroNames:258] synonym: "laminae septi pellucidi" EXACT OMO:0003004 [] synonym: "septum pellucidum lamina" EXACT [FMA:62472] xref: BAMS:lsp xref: BIRNLEX:1554 xref: FMA:62472 xref: neuronames:258 {source="BIRNLEX:1554"} xref: SCTID:12164006 xref: UMLS:C0152278 {source="BIRNLEX:1554"} xref: Wikipedia:Septum_pellucidum#Layers is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0004714 {source="FMA"} ! septum pellucidum property_value: UBPROP:0000012 "FMA classifies as white matter" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002743 name: basal forebrain namespace: uberon def: "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert." [BIRNLEX:1560] subset: human_reference_atlas subset: uberon_slim synonym: "basal forebrain area" RELATED [NeuroNames:1997] synonym: "pars basalis telencephali" RELATED OMO:0003011 [Wikipedia:Basal_forebrain] xref: BAMS:Basal_forebrain xref: BIRNLEX:1560 xref: BM:Tel-BF xref: BTO:0002444 xref: DHBA:10349 xref: EMAPA:35164 xref: FMA:77700 xref: HBA:4300 xref: MESH:D066187 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1997 {source="BIRNLEX:1560"} xref: PBA:128012976 xref: Wikipedia:Basal_forebrain is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001890 {source="BTO"} ! forebrain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a4/Basal_Forebrain_Monakhos_2007.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002744 name: hilum of dentate nucleus namespace: uberon def: "The mouth of the flasklike dentate nucleus of the cerebellum, directed inward (rostromedial), and giving exit to many of the fibers that compose the superior cerebellar peduncle or brachium conjunctivum." [http://www.drugs.com/dict/hilum-of-dentate-nucleus.html] synonym: "dentate nuclear hilum" EXACT [FMA:72548] synonym: "hilum nuclei dentati" RELATED OMO:0003011 [NeuroNames:687] synonym: "hilum of the dentate nucleus" RELATED [NeuroNames:687] xref: BAMS:hdt xref: BIRNLEX:1561 xref: FMA:72548 xref: neuronames:687 {source="BIRNLEX:1561"} xref: SCTID:369055003 xref: UMLS:C1289484 {source="BIRNLEX:1561"} is_a: UBERON:0008332 {source="FMA"} ! hilum of neuraxis relationship: part_of UBERON:0002132 {source="NIFSTD"} ! dentate nucleus [Term] id: UBERON:0002745 name: ventral amygdalofugal projection namespace: uberon synonym: "projectiones ventrales amygdalae" EXACT OMO:0003011 [FMA:61977, FMA:TA] synonym: "tractus amygdalofugalis ventralis" RELATED OMO:0003011 [NeuroNames:287] synonym: "ventral amygdalofugal pathway" EXACT [BIRNLEX:1563] xref: BAMS:vaf xref: BIRNLEX:1563 xref: FMA:61977 xref: neuronames:287 {source="BIRNLEX:1563"} xref: UMLS:C0175242 {source="BIRNLEX:1563"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter [Term] id: UBERON:0002746 name: intermediate periventricular nucleus namespace: uberon synonym: "hPe" EXACT OMO:0003011 [FMA:62328, FMA:TA] synonym: "intermediate periventricular hypothalamic nucleus" RELATED [BAMS:IPe] synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328] synonym: "intermediate periventricular nucleus of the hypothalamus" RELATED [BAMS:PVI] synonym: "IPe" BROAD OMO:0003000 [BIRNLEX:1564, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus periventricularis hypothalami" RELATED OMO:0003011 [NeuroNames:394] synonym: "periventricular hypothalamic nucleus, intermediate part" RELATED [NeuroNames:394] synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328] xref: BAMS:IPe xref: BAMS:PVI xref: BIRNLEX:1564 xref: FMA:62328 xref: MBA:118 xref: neuronames:394 {source="BIRNLEX:1564"} xref: UMLS:C0694604 {source="BIRNLEX:1564"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalamic region [Term] id: UBERON:0002747 name: neodentate part of dentate nucleus namespace: uberon synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539] synonym: "neodentate portion of the dentate nucleus" RELATED [NeuroNames:684] synonym: "pars neodentata" RELATED OMO:0003011 [NeuroNames:684] xref: BAMS:NDt xref: BIRNLEX:1567 xref: FMA:72539 xref: neuronames:684 {source="BIRNLEX:1567"} xref: UMLS:C0175485 {source="BIRNLEX:1567"} is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002748 name: medial lemniscus of medulla namespace: uberon def: "Part of medial lemniscus located within the medulla." [BIRNLEX:1570] synonym: "lemniscus medialis (myelencephali)" RELATED OMO:0003011 [NeuroNames:787] synonym: "medial lemniscus of the medulla" RELATED [NeuroNames:787] synonym: "medulla medial lemniscus" EXACT [OBOL:automatic] xref: BAMS:mlm xref: BIRNLEX:1570 xref: FMA:72621 xref: neuronames:787 {source="BIRNLEX:1570"} xref: UMLS:C0228534 {source="BIRNLEX:1570"} is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus relationship: part_of UBERON:0001896 {source="FMA", source="NIFSTD"} ! medulla oblongata relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus [Term] id: UBERON:0002749 name: regional part of cerebellar cortex namespace: uberon def: "A regional part of brain that is part of a cerebellar cortex [Automatically generated definition]." [OBOL:automatic] subset: non_informative synonym: "cerebellar cortical segment" EXACT [FMA:76924] synonym: "segment of cerebellar cortex" EXACT [BIRNLEX:1571] xref: BIRNLEX:1571 xref: FMA:76924 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002750 name: medial longitudinal fasciculus of medulla namespace: uberon def: "A medial longitudinal fasciculus that is part of a medulla [Automatically generated definition]." [OBOL:automatic] synonym: "fasciculus longitudinalis medialis (myelencephali)" RELATED OMO:0003011 [NeuroNames:784] synonym: "medial longitudinal fasciculus of medulla oblongata" EXACT [OBOL:automatic] synonym: "medial longitudinal fasciculus of the medulla" RELATED [NeuroNames:784] synonym: "medulla medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: BAMS:mlfm xref: BIRNLEX:1574 xref: FMA:72618 xref: neuronames:784 {source="BIRNLEX:1574"} xref: UMLS:C0228536 {source="BIRNLEX:1574"} is_a: UBERON:0002309 ! medial longitudinal fasciculus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002751 name: inferior temporal gyrus namespace: uberon def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the inferior temporal sulcus whereas the caudal boundary is designated as the temporo-occipital incisure on the cortical surface. The occipitotemporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine)." [BIRNLEX:1577] subset: human_reference_atlas subset: uberon_slim synonym: "gyrus temporalis inferior" EXACT [BIRNLEX:1577] synonym: "gyrus temporalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_temporal_gyrus] synonym: "inferotemporal cortex" RELATED [Wikipedia:Inferior_temporal_gyrus] synonym: "IT cortex" RELATED OMO:0003000 [Wikipedia:Inferior_temporal_gyrus] synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: BAMS:ITG xref: BIRNLEX:1577 xref: BM:Tel-ITG xref: BTO:0006175 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12142 xref: FMA:61907 xref: HBA:4147 xref: NCIT:C32791 xref: ncithesaurus:Inferior_Temporal_Gyrus xref: neuronames:138 {source="BIRNLEX:1577"} xref: SCTID:279191005 xref: Wikipedia:Inferior_temporal_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002752 name: olivocerebellar tract namespace: uberon def: "The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raphé, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]." [Wikipedia:Olivocerebellar_tract] subset: uberon_slim synonym: "fibrae olivocerebellares" RELATED OMO:0003011 [NeuroNames:804] synonym: "olivocerebellar fibers" RELATED [NeuroNames:804] synonym: "t. olivocerebellaris" RELATED OMO:0003011 [Wikipedia:Olivocerebellar_tract] synonym: "tractus olivocerebellaris" RELATED OMO:0003011 [NeuroNames:804] xref: BAMS:oc xref: BAMS:oct xref: BIRNLEX:1579 xref: BTO:0006157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12747 xref: FMA:72638 xref: MBA:404 xref: neuronames:804 {source="BIRNLEX:1579"} xref: UMLS:C0175557 {source="BIRNLEX:1579"} xref: Wikipedia:Olivocerebellar_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0014649 ! white matter of medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png" xsd:anyURI [Term] id: UBERON:0002753 name: posterior spinocerebellar tract namespace: uberon def: "It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum." [BIRNLEX:1585] subset: uberon_slim synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641] synonym: "dorsal spinocerebellar tract of the medulla" RELATED [NeuroNames:807] synonym: "flechsig's tract" EXACT [FMA:72641] xref: BAMS:dsc xref: BAMS:psc xref: BAMS:sctd xref: BIRNLEX:1585 xref: BM:DSCT xref: DHBA:12746 xref: DMBA:17761 xref: FMA:72641 xref: MBA:553 xref: neuronames:807 {source="BIRNLEX:1585"} xref: SCTID:369284002 xref: UMLS:C0175560 {source="BIRNLEX:1585"} xref: Wikipedia:Dorsal_spinocerebellar_tract is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0005413 ! spinocerebellar tract property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg" xsd:anyURI property_value: UBPROP:0000001 "The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted][Wikipedia:Dorsal_spinocerebellar_tract]." xsd:string {source="Wikipedia:Dorsal_spinocerebellar_tract"} [Term] id: UBERON:0002754 name: predorsal bundle namespace: uberon synonym: "fasciculus praedorsalis (Tschermak)" RELATED OMO:0003011 [NeuroNames:780] synonym: "fasciculus predorsalis" RELATED OMO:0003011 [NeuroNames:780] synonym: "predorsal bundle of Edinger" EXACT [] synonym: "predorsal fasciculus" EXACT [FMA:72614] synonym: "tectospinal fibers" EXACT [FMA:72614] xref: BAMS:pd xref: BIRNLEX:1590 xref: FMA:72614 xref: MESH:D065844 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:780 {source="BIRNLEX:1590"} xref: UMLS:C0175542 {source="BIRNLEX:1590"} is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain relationship: part_of UBERON:0014649 ! white matter of medulla oblongata [Term] id: UBERON:0002755 name: pyramidal decussation namespace: uberon def: "Part of medulla comprising a white matter structure containing nerve fibers of the pyramidal tract crossing from one side of the brain to the other (MM)." [BIRNLEX:1594] subset: pheno_slim subset: uberon_slim synonym: "corticospinal decussation" EXACT [FMA:72633] synonym: "decussatio motoria" RELATED OMO:0003011 [NeuroNames:799] synonym: "decussatio pyramidum" EXACT OMO:0003011 [FMA:72633, FMA:TA] synonym: "decussatio pyramidum medullae oblongatae" EXACT OMO:0003011 [FMA:72633, FMA:TA] synonym: "decussation of corticospinal tract" EXACT [FMA:72633] synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633] synonym: "decussation of pyramids" EXACT [FMA:72633] synonym: "decussation of pyramids of medulla" EXACT [FMA:72633] synonym: "decussation of the pyramidal tract" EXACT [BIRNLEX:1594] synonym: "motor decussation" EXACT [FMA:72633] synonym: "motor decussation of medulla" EXACT [FMA:72633] synonym: "pyramidal decussation" RELATED [Wikipedia:Decussation_of_pyramids] synonym: "pyramidal decussation (pourfour du petit)" EXACT [BIRNLEX:1594] synonym: "pyramidal tract decussation" EXACT [DMBA:dpy] xref: BAMS:pyd xref: BAMS:pyx xref: BIRNLEX:1594 xref: BM:Me-PyX xref: DHBA:12772 xref: DMBA:17760 xref: EMAPA:37945 {source="MA:th"} xref: FMA:72633 xref: HBA:12965 xref: MBA:198 xref: neuronames:799 {source="BIRNLEX:1594"} xref: SCTID:369058001 xref: UMLS:C0011128 {source="BIRNLEX:1594"} xref: Wikipedia:Decussation_of_pyramids is_a: UBERON:0007418 {source="FMA"} ! neural decussation relationship: part_of UBERON:0002707 {source="NIFSTD"} ! corticospinal tract relationship: part_of UBERON:0014649 ! white matter of medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png" xsd:anyURI [Term] id: UBERON:0002756 name: anterior cingulate gyrus namespace: uberon subset: human_reference_atlas subset: uberon_slim synonym: "anterior cingulate" RELATED [NeuroNames:161] synonym: "cGa" BROAD OMO:0003000 [FMA:61916, FMA:CMA] synonym: "cingulate gyrus, anterior division" BROAD [http://orcid.org/0000-0001-6755-0259] synonym: "cortex cingularis anterior" RELATED OMO:0003011 [NeuroNames:161] synonym: "gyrus cinguli anterior" RELATED OMO:0003011 [NeuroNames:161] synonym: "gyrus limbicus anterior" RELATED OMO:0003011 [NeuroNames:161] xref: BAMS:ACgG xref: BIRNLEX:1603 xref: FMA:61916 xref: neuronames:161 {source="BIRNLEX:1603"} xref: UMLS:C0175190 {source="BIRNLEX:1603"} is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: part_of UBERON:0009835 ! anterior cingulate cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002758 name: dorsal nucleus of medial geniculate body namespace: uberon def: "Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3)." [BIRNLEX:1608] synonym: "DMG" BROAD OMO:0003000 [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal medial geniculate nucleus" RELATED [BAMS:MGD] synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] synonym: "dorsal nucleus of the medial geniculate body" RELATED [NeuroNames:356] synonym: "medial geniculate complex dorsal part" RELATED [BAMS:MGd] synonym: "medial geniculate complex, dorsal part" EXACT [BIRNLEX:1608] synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGD, BAMS:MGd] synonym: "medial geniculate nucleus, dorsal part" EXACT [BIRNLEX:1608] synonym: "MGD" BROAD OMO:0003000 [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [BIRNLEX:1608] synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673] synonym: "nucleus dorsalis corporis geniculati medialis" EXACT OMO:0003011 [FMA:62216, FMA:TA] synonym: "nucleus geniculatus medialis fibrosus (hassler)" EXACT [BIRNLEX:1608] synonym: "nucleus geniculatus medialis pars dorsalis" EXACT [BIRNLEX:1608] xref: BAMS:DMG xref: BAMS:MGD xref: BAMS:MGd xref: BIRNLEX:1608 xref: BTO:0002673 xref: DHBA:10435 xref: FMA:62216 xref: HBA:265504828 xref: MBA:1072 xref: neuronames:356 {source="BIRNLEX:1608"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001927 ! medial geniculate body property_value: RO:0002171 UBERON:0002759 {source="ABA"} property_value: RO:0002171 UBERON:0002985 {source="ABA"} [Term] id: UBERON:0002759 name: magnocellular nucleus of medial geniculate body namespace: uberon synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "corpus geniculatus mediale, pars magnocellularis" RELATED OMO:0003011 [NeuroNames:358] synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [BIRNLEX:1612] synonym: "magnocellular medial geniculate nucleus" RELATED [BAMS:MGM] synonym: "magnocellular nucleus of medial geniculate complex" RELATED [NeuroNames:358] synonym: "magnocellular nucleus of the medial geniculate body" RELATED [NeuroNames:358] synonym: "medial division of medial geniculate body" EXACT [FMA:62218] synonym: "medial geniculate complex medial part" RELATED [BAMS:MGm] synonym: "medial geniculate complex, medial part" EXACT [FMA:62218] synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGM, BAMS:MGm] synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218] synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "MMG" BROAD OMO:0003000 [BIRNLEX:1612, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "nucleus corporis geniculati medialis, pars magnocellularis" RELATED OMO:0003011 [NeuroNames:358] synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [BIRNLEX:1612] synonym: "nucleus geniculatus medialis magnocellularis (Hassler)" RELATED OMO:0003011 [NeuroNames:358] synonym: "nucleus geniculatus medialis, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "nucleus geniculatus medialis, pars magnocellularis" RELATED OMO:0003011 [NeuroNames:358] synonym: "nucleus medialis magnocellularis corporis geniculati medialis" RELATED [BTO:0002672] xref: BAMS:MGM xref: BAMS:MGm xref: BAMS:MMG xref: BIRNLEX:1612 xref: BTO:0002672 xref: DHBA:10439 xref: FMA:62218 xref: HBA:4448 xref: MBA:1088 xref: neuronames:358 {source="BIRNLEX:1612"} xref: UMLS:C0175296 {source="BIRNLEX:1612"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001927 ! medial geniculate body property_value: RO:0002171 UBERON:0002758 {source="ABA"} property_value: RO:0002171 UBERON:0002985 {source="ABA"} [Term] id: UBERON:0002760 name: ventral corticospinal tract namespace: uberon def: "Part of pyramidal tract (corticospinal tract) containing uncrossed fibers and traveling in the ventral funiculus of the spinal cord." [BIRNLEX:1618] subset: pheno_slim subset: uberon_slim synonym: "anterior cerebrospinal fasciculus" RELATED [NeuroNames:2955] synonym: "anterior corticospinal tract" EXACT [FMA:72636] synonym: "anterior corticospinal tract" RELATED [NeuroNames:2955] synonym: "anterior corticospinal tract of the medulla" RELATED [NeuroNames:802] synonym: "anterior pyramidal tract" EXACT [FMA:72636] synonym: "anterior tract of turck" EXACT [FMA:72636] synonym: "bundle of Turck" EXACT [FMA:72636] synonym: "bundle of Turck" RELATED [NeuroNames:2955] synonym: "column of Turck" EXACT [FMA:72636] synonym: "corticospinal tract, uncrossed" EXACT [MBA:1028] synonym: "corticospinal tract, uncrossed" RELATED [NeuroNames:2955] synonym: "direct corticospinal tract" RELATED [NeuroNames:2955] synonym: "medial corticospinal tract" RELATED [NeuroNames:2955] synonym: "tractus corticospinalis anterior" RELATED OMO:0003011 [NeuroNames:802] synonym: "tractus corticospinalis ventralis" RELATED OMO:0003011 [NeuroNames:802] synonym: "uncrossed corticospinal tract" RELATED [NeuroNames:2955] synonym: "ventral corticospinal tract" RELATED [NeuroNames:2955] xref: BAMS:vcsp xref: BIRNLEX:1618 xref: DHBA:12798 xref: EMAPA:37889 {source="MA:th"} xref: FMA:72636 xref: MBA:1028 xref: neuronames:802 {source="BIRNLEX:1618"} xref: SCTID:369092003 xref: UMLS:C0152403 {source="BIRNLEX:1618"} xref: Wikipedia:Ventral_corticospinal_tract is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002707 {source="NIFSTD"} ! corticospinal tract property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg" xsd:anyURI [Term] id: UBERON:0002761 name: inferior frontal sulcus namespace: uberon def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_sulcus] subset: human_reference_atlas subset: uberon_slim synonym: "IFRS" BROAD OMO:0003000 [BIRNLEX:1619, NIFSTD:NeuroNames_abbrevSource] synonym: "inferior frontal fissure" EXACT [FMA:83757] synonym: "sulcus f2" EXACT [FMA:83757] synonym: "sulcus frontalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_frontal_sulcus] synonym: "sulcus frontalis secundus" RELATED OMO:0003011 [NeuroNames:63] xref: BAMS:ifrs xref: BAMS:ifs xref: BIRNLEX:1619 xref: DHBA:10631 xref: FMA:83757 xref: HBA:9357 xref: NCIT:C32776 xref: neuronames:63 {source="BIRNLEX:1619"} xref: SCTID:279343004 xref: UMLS:C0262251 {source="ncithesaurus:Inferior_Frontal_Sulcus"} xref: Wikipedia:Inferior_frontal_sulcus is_a: UBERON:0013118 ! sulcus of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/72/Gray726_Inferior_frontal_sulcus.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002762 name: internal medullary lamina of thalamus namespace: uberon def: "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26)." [BIRNLEX:1621] synonym: "envelope (involucrum medial) (Hassler)" EXACT OMO:0003011 [FMA:62079, FMA:TA] synonym: "internal medullary lamina" EXACT [FMA:62079] synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079] synonym: "internal medullary lamina of the thalamus" RELATED [BAMS:im, BAMS:iml] synonym: "lamina medullaris interna" EXACT OMO:0003011 [FMA:62079, FMA:TA] synonym: "lamina medullaris interna thalami" EXACT OMO:0003011 [FMA:62079, FMA:TA] synonym: "lamina medullaris medialis" BROAD OMO:0003011 [] synonym: "lamina medullaris medialis thalami" EXACT OMO:0003011 [FMA:62079, FMA:TA] synonym: "lamina medullaris thalami interna" EXACT OMO:0003011 [FMA:62079, FMA:TA] xref: BAMS:im xref: BAMS:iml xref: BIRNLEX:1621 xref: DHBA:12063 xref: FMA:62079 xref: HBA:265505134 xref: MBA:14 xref: neuronames:368 xref: SCTID:369161003 xref: UMLS:C0228322 {source="BIRNLEX:1621"} is_a: UBERON:0014533 ! medullary lamina of thalamus [Term] id: UBERON:0002763 name: accessory medullary lamina of globus pallidus namespace: uberon def: "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303)." [BIRNLEX:1626] synonym: "accessory medullar lamina of pallidum" EXACT [BIRNLEX:1626] synonym: "accessory medullary lamina" EXACT [FMA:62471] synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471] synonym: "accessory medullary lamina of globus pallidus" EXACT [FMA:62471] synonym: "accessory medullary lamina of pallidum" RELATED [NeuroNames:236] synonym: "accessory medullary lamina pallidus" EXACT [FMA:62471] synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471] synonym: "incomplete medullary lamina of the globus pallidus" RELATED [BAMS:icml] synonym: "lamella pallidi incompleta" RELATED OMO:0003011 [NeuroNames:236] synonym: "lamina medullaris accessoria" RELATED OMO:0003011 [NeuroNames:236] synonym: "lamina medullaris accessoria corporis striati" EXACT OMO:0003011 [FMA:62471, FMA:TA] synonym: "lamina medullaris incompleta pallidi" RELATED OMO:0003011 [NeuroNames:236] synonym: "lamina pallidi incompleta" RELATED OMO:0003011 [NeuroNames:236] xref: BAMS:aml xref: BAMS:icml xref: BIRNLEX:1626 xref: FMA:62471 xref: neuronames:236 {source="BIRNLEX:1626"} xref: UMLS:C0175213 {source="BIRNLEX:1626"} is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere relationship: part_of UBERON:0001875 {source="FMA"} ! globus pallidus relationship: part_of UBERON:0002477 {source="NIFSTD"} ! medial globus pallidus [Term] id: UBERON:0002764 name: inferior precentral sulcus namespace: uberon synonym: "inferior part of precentral fissure" EXACT [FMA:83764] synonym: "sulcus praecentralis inferior" EXACT [BIRNLEX:1627] synonym: "sulcus precentralis inferior" EXACT [BIRNLEX:1627] xref: BAMS:iprs xref: BIRNLEX:1627 xref: FMA:83764 xref: neuronames:72 {source="BIRNLEX:1627"} xref: UMLS:C0262257 {source="BIRNLEX:1627"} is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0022252 ! precentral sulcus [Term] id: UBERON:0002765 name: lateral medullary lamina of globus pallidus namespace: uberon def: "The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 )." [NeuroNames:234] synonym: "external medulary lamina of globus pallidus" EXACT [BIRNLEX:1634] synonym: "external medulary lamina of lentiform nucleus" EXACT [BIRNLEX:1634] synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469] synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469] synonym: "globus pallidus, lamina medullaris externa" RELATED OMO:0003011 [NeuroNames:234] synonym: "lamella pallidi externa" RELATED OMO:0003011 [NeuroNames:234] synonym: "lamina medullaris externa corporis striati" EXACT OMO:0003011 [FMA:62469, FMA:TA] synonym: "lamina medullaris externa pallidi" RELATED OMO:0003011 [NeuroNames:234] synonym: "lamina medullaris lateralis" RELATED OMO:0003011 [NeuroNames:234] synonym: "lamina medullaris lateralis corporis striati" EXACT OMO:0003011 [FMA:62469, FMA:TA] synonym: "lamina pallidi externa" RELATED OMO:0003011 [NeuroNames:234] synonym: "lateral medulary lamina of globus pallidus" EXACT [BIRNLEX:1634] synonym: "lateral medulary stria" EXACT [BIRNLEX:1634] synonym: "lateral medullary lamina" EXACT [FMA:62469] synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "lateral medullary lamina of globus pallidus" EXACT [FMA:62469] synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469] synonym: "lateral medullary lamina of the globus pallidus" RELATED [BAMS:lml] synonym: "lateral medullary stria" EXACT [FMA:62469] synonym: "medulary lamina of pallidum" EXACT [BIRNLEX:1634] synonym: "outer medulary lamina" EXACT [BIRNLEX:1634] synonym: "outer medullary lamina" EXACT [FMA:62469] xref: BAMS:lml xref: BIRNLEX:1634 xref: DHBA:12037 xref: FMA:62469 xref: HBA:265505086 xref: neuronames:234 {source="BIRNLEX:1634"} xref: SCTID:369204004 xref: UMLS:C0152339 {source="BIRNLEX:1634"} is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere relationship: part_of UBERON:0001875 {source="FMA", source="NIFSTD"} ! globus pallidus [Term] id: UBERON:0002766 name: fusiform gyrus namespace: uberon def: "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]." [Wikipedia:Fusiform_gyrus] subset: uberon_slim synonym: "gyrus fusiformis" RELATED OMO:0003011 [Wikipedia:Fusiform_gyrus] synonym: "gyrus occipito-temporalis lateralis" RELATED OMO:0003011 [NeuroNames:139] synonym: "gyrus occipitotemporalis lateralis" EXACT OMO:0003011 [FMA:61908, FMA:TA] synonym: "lateral occipito-temporal gyrus" RELATED [NeuroNames:139] synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908] synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT [] synonym: "occipito-temporal gyrus" RELATED [BAMS:OTG] synonym: "occipitotemporal gyrus" EXACT [FMA:61908] synonym: "t4" RELATED [NeuroNames:139] xref: BAMS:FuG xref: BAMS:LOTG xref: BAMS:OTG xref: BIRNLEX:1641 xref: FMA:61908 xref: HBA:4156 xref: NCIT:C33197 xref: neuronames:139 {source="BIRNLEX:1641"} xref: SCTID:110678003 xref: UMLS:C0152313 {source="BIRNLEX:1641"} xref: Wikipedia:Fusiform_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg" xsd:anyURI [Term] id: UBERON:0002767 name: inferior rostral sulcus namespace: uberon synonym: "IROS" BROAD OMO:0003000 [BIRNLEX:1642, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rostralis inferior" EXACT [BIRNLEX:1642] xref: BAMS:iros xref: BIRNLEX:1642 xref: DHBA:146034844 xref: FMA:83767 xref: HBA:9367 xref: neuronames:75 {source="BIRNLEX:1642"} xref: UMLS:C0694584 {source="BIRNLEX:1642"} is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002768 name: vestibulospinal tract namespace: uberon def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [GO:0021962] subset: uberon_slim subset: vertebrate_core synonym: "tractus vestibulospinalis" RELATED OMO:0003011 [Wikipedia:Vestibulospinal_tract] synonym: "vestibulo-spinal tract" EXACT [ZFA:0000709] synonym: "vestibulo-spinal tracts" RELATED OMO:0003004 [ZFA:0000709] synonym: "vestibulospinal pathway" RELATED [NeuroNames:812] synonym: "vestibulospinal tracts" RELATED [NeuroNames:812] xref: BAMS:vs xref: BIRNLEX:1643 xref: FMA:72646 xref: MBA:941 xref: neuronames:812 {source="BIRNLEX:1643"} xref: SCTID:369289007 xref: TAO:0000709 xref: UMLS:C0152404 {source="BIRNLEX:1643"} xref: Wikipedia:Vestibulospinal_tract xref: ZFA:0000709 is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0002316 ! white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg" xsd:anyURI [Term] id: UBERON:0002769 name: superior temporal gyrus namespace: uberon def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the ssuperior temporal sulcus. The caudal boundary is the cauday portion of the superior temporal gyrus (posterior to becoming continuous with the supramarginal gyrus). The medial boundary is the lateral fissure (and when present the supramarginal gyrus), and the lateral boundary is the superior temporal suclus (Christine Fennema-Notestine)." [BIRNLEX:1648] subset: efo_slim subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "gyrus temporalis superior" EXACT [BIRNLEX:1648] synonym: "gyrus temporalis superior" RELATED OMO:0003011 [Wikipedia:Superior_temporal_gyrus] xref: BAMS:STG xref: BIRNLEX:1648 xref: BM:Tel-STG xref: BTO:0006177 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12140 xref: EFO:0001944 xref: FMA:61905 xref: HBA:4133 xref: NCIT:C33698 xref: ncithesaurus:Superior_Temporal_Gyrus xref: neuronames:136 {source="BIRNLEX:1648"} xref: SCTID:362345008 xref: UMLS:C0152309 {source="BIRNLEX:1648"} xref: Wikipedia:Superior_temporal_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002770 name: posterior hypothalamic region namespace: uberon def: "The part of the hypothalamus posterior to the middle region consisting of several nuclei including the medial mamillary nucleus, lateral mamillary nucleus, and posterior hypothalamic nucleus (posterior hypothalamic area). The posterior hypothalamic area is concerned with control of sympathetic responses and is sensitive to conditions of decreasing temperature and controls the mechanisms for the conservation and increased production of heat." [MESH:A08.186.211.730.385.357.362] synonym: "hypothalamus posterior" RELATED OMO:0003011 [NeuroNames:411] synonym: "mammillary level of hypothalamus" EXACT [FMA:62029] synonym: "mammillary region" EXACT [FMA:62029] synonym: "PHR" BROAD OMO:0003000 [BIRNLEX:1651, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior hypothalamus" EXACT [FMA:62029] synonym: "regio hypothalamica posterior" RELATED OMO:0003011 [NeuroNames:411] xref: BAMS:PH xref: BAMS:PHR xref: BIRNLEX:1651 xref: FMA:62029 xref: GAID:651 xref: HBA:4665 xref: MESH:D007034 xref: neuronames:411 {source="BIRNLEX:1651"} xref: UMLS:C0020670 {source="BIRNLEX:1651"} xref: Wikipedia:Mammillary_process is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002771 name: middle temporal gyrus namespace: uberon def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine)." [BIRNLEX:1653] subset: efo_slim subset: human_reference_atlas subset: uberon_slim synonym: "gyrus temporalis medius" EXACT [BIRNLEX:1653] synonym: "inferior temporal gyrus (Seltzer)" RELATED [NeuroNames:137] synonym: "intermediate temporal gyrus" EXACT [FMA:61906] synonym: "medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus] synonym: "middle (medial) temporal gyrus" RELATED [BAMS:MTG] xref: BAMS:MTG xref: BIRNLEX:1653 xref: BTO:0006176 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12141 xref: EFO:0002466 xref: FMA:61906 xref: HBA:4140 xref: NCIT:C33125 xref: ncithesaurus:Middle_Temporal_Gyrus xref: neuronames:137 {source="BIRNLEX:1653"} xref: SCTID:279190006 xref: UMLS:C0152310 {source="BIRNLEX:1653"} xref: Wikipedia:Middle_temporal_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002772 name: olfactory sulcus namespace: uberon def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_sulcus] subset: uberon_slim synonym: "olfactory groove" EXACT [BIRNLEX:1655] synonym: "OLFS" BROAD OMO:0003000 [BIRNLEX:1655, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus olfactorius" EXACT [BIRNLEX:1655] synonym: "sulcus olfactorius lobi frontalis" RELATED OMO:0003011 [Wikipedia:Olfactory_sulcus] xref: BAMS:olfs xref: BIRNLEX:1655 xref: BM:Tel-Cx-OFS xref: DHBA:10624 xref: FMA:83769 xref: HBA:9361 xref: NCIT:C33206 xref: neuronames:78 {source="BIRNLEX:1655"} xref: SCTID:279358007 xref: UMLS:C0228205 {source="BIRNLEX:1655", source="ncithesaurus:Olfactory_Sulcus"} xref: UMLS:C1281082 {source="BIRNLEX:1655"} xref: Wikipedia:Olfactory_sulcus is_a: UBERON:0013118 ! sulcus of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray729_olfactory_sulcus.png" xsd:anyURI [Term] id: UBERON:0002773 name: anterior transverse temporal gyrus namespace: uberon def: "The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [Wikipedia:Transverse_temporal_gyrus] subset: human_reference_atlas synonym: "anterior transverse convolution of heschl" EXACT [BIRNLEX:1657] synonym: "anterior transverse temporal convolution of heschl" EXACT [] synonym: "first transverse gyrus of Heschl" EXACT [] synonym: "great transverse gyrus of Heschl" EXACT [] synonym: "gyrus temporalis transversus anterior" RELATED OMO:0003011 [NeuroNames:134] synonym: "gyrus temporalis transversus primus" RELATED OMO:0003011 [NeuroNames:134] xref: BAMS:ATTG xref: BIRNLEX:1657 xref: FMA:61909 xref: FMA:71029 xref: HBA:4165 xref: neuronames:134 {source="BIRNLEX:1657"} xref: SCTID:279192003 xref: UMLS:C0262198 {source="BIRNLEX:1657"} xref: Wikipedia:Transverse_temporal_gyrus is_a: UBERON:0003939 ! transverse gyrus of Heschl property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002774 name: posterior transverse temporal gyrus namespace: uberon subset: human_reference_atlas synonym: "gyrus temporalis transversus posterior" RELATED OMO:0003011 [NeuroNames:135] synonym: "posterior transverse convolution of heschl" EXACT [BIRNLEX:1661] synonym: "posterior transverse temporal convolution of heschl" EXACT [] xref: BAMS:PTTG xref: BIRNLEX:1661 xref: FMA:61910 xref: neuronames:135 {source="BIRNLEX:1661"} xref: SCTID:279193008 xref: UMLS:C0262320 {source="BIRNLEX:1661"} is_a: UBERON:0003939 ! transverse gyrus of Heschl property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002775 name: olivocochlear bundle namespace: uberon def: "A pathway that terminates on the hair cells of the cochlea or equivalent organ in the inner ear." [ISBN:0471888893] synonym: "bundle of Rasmussen" EXACT [] synonym: "efferent cochlear bundle" EXACT [FMA:72485] synonym: "efferent cochlear pathway" EXACT [FMA:72485] synonym: "olivocochlear bundle of rasmussen" EXACT [ISBN:0471888893] synonym: "olivocochlear tract" EXACT [FMA:72485] synonym: "tractus olivocochlearis" EXACT OMO:0003011 [FMA:72485, FMA:TA] xref: BAMS:ocb xref: BIRNLEX:1666 xref: DHBA:12771 xref: FMA:72485 xref: neuronames:577 {source="BIRNLEX:1666"} xref: SCTID:369030009 xref: UMLS:C0228447 {source="BIRNLEX:1666"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002776 name: ventral nuclear group namespace: uberon def: "Nuclei in the ventral part of the thalamus, involved in modulating activity of dorsal thalamic nuclei." [ISBN:0471888893] subset: uberon_slim synonym: "dorsal thalamus, ventral group" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nuclei ventrales thalami" EXACT [BIRNLEX:1669] synonym: "ventral dorsal thalamic nuclear group" RELATED [BAMS:VENT] synonym: "ventral group of dorsal thalamus" EXACT [BIRNLEX:1669] synonym: "ventral group of the dorsal thalamus" RELATED [BAMS:VENT] synonym: "ventral nuclear group" EXACT [FMA:62022] synonym: "ventral nuclear group of thalamus" EXACT [FMA:62022] synonym: "ventral nuclear mass" EXACT [FMA:62022] synonym: "ventral nuclei of thalamus" EXACT [FMA:62022] synonym: "ventral thalamus nucleus" RELATED [ZFA:0005576] synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022] synonym: "VNG" BROAD OMO:0003000 [BIRNLEX:1669, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VENT xref: BAMS:VNG xref: BIRNLEX:1669 xref: BTO:0002467 xref: DMBA:16423 xref: EV:0100206 xref: FMA:62022 xref: MBA:637 xref: MESH:D020651 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:333 {source="BIRNLEX:1669"} xref: SCTID:279125005 xref: UMLS:C0228333 {source="BIRNLEX:1669"} xref: Wikipedia:Ventral_nuclear_group xref: ZFA:0005576 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 {source="FMA"} ! dorsal thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002171 UBERON:0002144 {source="ABA"} property_value: RO:0002171 UBERON:0002704 {source="ABA"} property_value: UBPROP:0000001 "The ventral nuclear group is a collection of nuclei on the ventral side of the thalamus. According to MeSH, it consists of the following: ventral anterior nucleus ventral lateral nucleus ventral posterior nucleus [WP,unvetted][Wikipedia:Ventral_nuclear_group]." xsd:string {source="Wikipedia:Ventral_nuclear_group"} property_value: UBPROP:0000012 "consider splitting nucleus from nuclear group (FMA has 'nucleus of subthalamus') - but note this is also treated as a nucleus (singular) in FMA. ZFA:0005576 represents an individual nucleus within the group" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002778 name: ventral pallidum namespace: uberon def: "Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM)." [BIRNLEX:1674] synonym: "fibrae nervi vagi" RELATED OMO:0003011 [NeuroNames:794] synonym: "globus pallidus ventral part" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pallidum ventral region" RELATED [BAMS:PALv] synonym: "ventral globus pallidus" RELATED [BTO:0004375] synonym: "ventral pallidum" EXACT [BIRNLEX:1674] xref: BAMS:PALv xref: BIRNLEX:1674 xref: BM:Tel-VPa xref: BTO:0004375 xref: DHBA:10345 xref: DMBA:15844 xref: FMA:77613 xref: MBA:835 xref: neuronames:794 {source="BIRNLEX:1674"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0006514 {source="FMA"} ! pallidum relationship: part_of UBERON:0001875 {source="BTO", source="NIF-def"} ! globus pallidus relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain [Term] id: UBERON:0002779 name: lateral superior olivary nucleus namespace: uberon def: "One of two recognized nuclei comprising the superior olive. The lateral superior olivary nucleus is much less prominent in humans than in many rodents and carnivores. In the latter species, it is frequently described as S- or V-shaped." [BIRNLEX:1675] subset: uberon_slim synonym: "accessory olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olive" EXACT [FMA:72472] synonym: "inferior olivary complex dorsalaccessory nucleus" RELATED [BAMS:IOda] synonym: "lateral superior olive" EXACT [FMA:72472] synonym: "LSON" EXACT OMO:0003000 [] synonym: "nucleus olivaris superior lateralis" RELATED OMO:0003011 [NeuroNames:571] synonym: "superior olivary complex, lateral part" RELATED [NeuroNames:571] synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472] synonym: "superior olive lateral part" EXACT [] xref: BAMS:IOda xref: BAMS:LSO xref: BIRNLEX:1675 xref: BM:Pons-SOL xref: DHBA:12469 xref: DMBA:17261 xref: FMA:72472 xref: HBA:9183 xref: MBA:114 xref: neuronames:571 {source="BIRNLEX:1675"} xref: SCTID:360477003 xref: UMLS:C0175429 {source="BIRNLEX:1675"} xref: Wikipedia:Olivary_body is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png" xsd:anyURI [Term] id: UBERON:0002781 name: caudal part of ventral posterolateral nucleus of thalamus namespace: uberon synonym: "caudal part of the ventral posterolateral nucleus" RELATED [NeuroNames:346] synonym: "caudal part of ventral posterolateral nucleus" EXACT [FMA:62206] synonym: "nucleus ventralis caudalis lateralis" RELATED OMO:0003011 [NeuroNames:346] synonym: "nucleus ventralis posterior lateralis, pars caudalis" RELATED OMO:0003011 [NeuroNames:346] synonym: "nucleus ventralis posterior pars lateralis (Dewulf)" RELATED OMO:0003011 [NeuroNames:346] synonym: "nucleus ventralis posterolateralis (Walker)" RELATED OMO:0003011 [NeuroNames:346] synonym: "nucleus ventrocaudalis externus (Van Buren)" RELATED OMO:0003011 [NeuroNames:346] synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT [] synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206] synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206] synonym: "ventral posterolateral thalamic nucleus, posterior part" RELATED [BAMS:VPLp] synonym: "VPLC" BROAD OMO:0003000 [BIRNLEX:1681, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VPLC xref: BAMS:VPLp xref: BIRNLEX:1681 xref: DHBA:266441515 xref: FMA:62206 xref: neuronames:346 {source="BIRNLEX:1681"} xref: UMLS:C0175287 {source="BIRNLEX:1681"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002942 {source="NIFSTD"} ! ventral posterolateral nucleus [Term] id: UBERON:0002782 name: medial superior olivary nucleus namespace: uberon def: "One of two subnuclei of the superior olive located within the caudal pontine tegmentum. Appears as a parasagittal row of transversely oriented bipolar neurons in transverse sections of human, with elongated somata in humans and other primates and large caliber dendrites." [BIRNLEX:1682] subset: defined_by_cytoarchitecture subset: uberon_slim synonym: "chief nucleus of superior olive" EXACT [FMA:72473] synonym: "chief superior olivary nucleus" EXACT [FMA:72473] synonym: "main superior olivary nucleus" EXACT [FMA:72473] synonym: "medial superior olive" EXACT [FMA:72473] synonym: "MSO" RELATED OMO:0003000 [BIRNLEX:1682] synonym: "nucleus laminaris" RELATED [BIRNLEX:1682] synonym: "nucleus olivaris superior medialis" RELATED OMO:0003011 [NeuroNames:572] synonym: "principal superior olivary nucleus" EXACT [FMA:72473] synonym: "superior olivary complex, medial part" RELATED [NeuroNames:572] synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473] synonym: "superior olive medial part" EXACT [] synonym: "superior paraolivary nucleus" RELATED [NeuroNames:572] synonym: "superior parolivary nucleus" RELATED [NeuroNames:572] xref: BAMS:MSO xref: BIRNLEX:1682 xref: BM:Pons-SOM xref: DHBA:12470 xref: DMBA:17262 xref: FMA:226223 xref: FMA:72473 xref: HBA:9184 xref: MBA:105 xref: neuronames:572 {source="BIRNLEX:1682"} xref: UMLS:C0175430 {source="BIRNLEX:1682"} xref: Wikipedia:Superior_olivary_complex is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png" xsd:anyURI [Term] id: UBERON:0002783 name: central tegmental tract of pons namespace: uberon synonym: "central tegmental tract of the pons" RELATED [NeuroNames:601] synonym: "tractus tegmentalis centralis (pontis)" RELATED OMO:0003011 [NeuroNames:601] xref: BAMS:ctgp xref: BIRNLEX:1683 xref: FMA:72494 xref: neuronames:601 {source="BIRNLEX:1683"} xref: UMLS:C0228443 {source="BIRNLEX:1683"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum relationship: part_of UBERON:0009643 ! central tegmental tract [Term] id: UBERON:0002786 name: root of abducens nerve namespace: uberon def: "Nerve fibers arising from motor neurons in the abducens nucleus that are contained within the pontine tegmentum." [BIRNLEX:1689] synonym: "abducens nerve fibers" EXACT [FMA:72491] synonym: "abducens nerve root" RELATED [BIRNLEX:1277] synonym: "abducens nerve tract" EXACT [FMA:72491] synonym: "abducens nerve/root" RELATED [BAMS:6n] synonym: "central part of abducens nerve" EXACT [FMA:72491] synonym: "fibrae nervi abducentis" RELATED OMO:0003011 [NeuroNames:598] synonym: "root of abducens nerve" EXACT [FMA:72491] xref: BAMS:6n xref: BAMS:6nf xref: BIRNLEX:1277 xref: BIRNLEX:1689 xref: DHBA:12861 xref: DMBA:17741 xref: FMA:72491 xref: neuronames:598 {source="BIRNLEX:1689"} xref: UMLS:C0175450 {source="BIRNLEX:1689"} is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: part_of UBERON:0001896 {source="ZFA-abduced"} ! medulla oblongata [Term] id: UBERON:0002787 name: decussation of trochlear nerve namespace: uberon def: "The crossing of the two trochlear nerves at their exit through the velum medullare anterius." [http://www.medilexicon.com/medicaldictionary.php?t=23125] synonym: "decussatio fibrarum nervorum trochlearium" EXACT OMO:0003011 [http://www.medilexicon.com/medicaldictionary.php?t=23125] synonym: "decussatio nervorum trochlearium" RELATED OMO:0003011 [NeuroNames:595] synonym: "decussatio trochlearis" RELATED OMO:0003011 [NeuroNames:595] synonym: "decussation of the trochlear nerve" RELATED [NeuroNames:595] synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488] synonym: "decussation of trochlear nerve fibers" EXACT [DHBA:12338] synonym: "trochlear decussation" RELATED [BAMS:4x] synonym: "trochlear nerve decussation" RELATED [NeuroNames:595] synonym: "trochlear neural decussation" EXACT [FMA:72488] xref: BAMS:4x xref: BAMS:IVd xref: BIRNLEX:1690 xref: DHBA:12338 xref: FMA:72488 xref: MBA:384 xref: neuronames:595 {source="BIRNLEX:1690"} xref: UMLS:C0175448 {source="BIRNLEX:1690"} is_a: UBERON:0007418 ! neural decussation relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002788 name: anterior nuclear group namespace: uberon def: "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)." [BIRNLEX:1692] subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "ANG" BROAD OMO:0003000 [BIRNLEX:1692, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior group of thalamus" RELATED [BAMS:ATN] synonym: "anterior group of the dorsal thalamus" RELATED [BAMS:ATN] synonym: "anterior nuclear group" EXACT [FMA:62019] synonym: "anterior nuclear group of thalamus" EXACT [FMA:62019] synonym: "anterior nuclear group of the thalamus" RELATED [NeuroNames:302] synonym: "anterior nuclei of thalamus" EXACT [FMA:62019] synonym: "anterior nucleus of thalamus" EXACT [FMA:62019] synonym: "anterior thalamic group" EXACT [MA:0000861] synonym: "anterior thalamic nuclear group" RELATED [BAMS:ATN] synonym: "anterior thalamic nuclei" EXACT [FMA:62019] synonym: "anterior thalamic nucleus" RELATED [NeuroNames:302] synonym: "anterior thalamus" EXACT [BIRNLEX:1692] synonym: "dorsal thalamus anterior division" RELATED [BAMS:ATN] synonym: "nuclei anterior thalami" EXACT [BIRNLEX:1692] synonym: "nuclei anteriores (thalami)" EXACT [BIRNLEX:1692] synonym: "nuclei anteriores thalami" EXACT [BIRNLEX:1692] synonym: "nuclei thalamicus anterior" EXACT [BIRNLEX:1692] synonym: "nucleus anterior thalami" RELATED OMO:0003011 [NeuroNames:302] synonym: "nucleus thalamicus anterior" RELATED OMO:0003011 [NeuroNames:302] synonym: "rostral thalamic nucleus" RELATED [TAO:0000427] xref: BAMS:ANG xref: BAMS:asan xref: BAMS:ATh xref: BAMS:ATN xref: BIRNLEX:1692 xref: DHBA:10392 xref: EMAPA:35132 xref: EV:0100196 xref: FMA:62019 xref: GAID:658 xref: MA:0000861 xref: MBA:239 xref: MESH:D020643 xref: neuronames:2883 xref: neuronames:302 {source="BIRNLEX:1692"} xref: SCTID:279124009 xref: TAO:0000427 xref: UMLS:C0228316 {source="BIRNLEX:1692"} xref: Wikipedia:Anterior_nuclear_group xref: ZFA:0000427 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002790 name: dorsal acoustic stria namespace: uberon def: "White matter structure containing fibers arising from the cochlear nuclear complex." [BIRNLEX:1698] synonym: "dorsal acoustic stria (Monakow)" RELATED [NeuroNames:602] synonym: "posterior acoustic stria" EXACT [FMA:72496] synonym: "stria cochlearis posterior" EXACT OMO:0003011 [FMA:72496, FMA:TA] synonym: "striae acusticae dorsalis" RELATED OMO:0003011 [NeuroNames:602] xref: BAMS:das xref: BIRNLEX:1698 xref: DHBA:12733 xref: FMA:72496 xref: MBA:506 xref: neuronames:602 {source="BIRNLEX:1698"} xref: UMLS:C0175454 {source="BIRNLEX:1698"} is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis is_a: UBERON:0019293 ! white matter of pontine tegmentum relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002792 name: lumbar spinal cord namespace: uberon subset: human_reference_atlas subset: uberon_slim synonym: "lumbar segment of spinal cord" EXACT [FMA:71168] synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168] synonym: "lumbar spinal cord" EXACT [FMA:71168] synonym: "pars lumbalis medullae spinalis" EXACT OMO:0003011 [FMA:71168, FMA:TA] synonym: "segmenta lumbalia medullae spinalis [1-5]" EXACT OMO:0003011 [FMA:71168, FMA:TA] synonym: "spinal cord lumbar segment" EXACT [MA:0003083] xref: BIRNLEX:1704 xref: FMA:71168 xref: MA:0003083 xref: NCIT:C12895 xref: neuronames:1677 xref: SCTID:180962006 xref: UMLS:C0581620 {source="BIRNLEX:1704"} xref: UMLS:C0581621 {source="ncithesaurus:Lumbar_Spinal_Cord"} xref: UMLS:C1278838 {source="BIRNLEX:1704"} xref: Wikipedia:Lumbar_spinal_cord is_a: UBERON:0005844 ! spinal cord segment property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002793 name: dorsal longitudinal fasciculus of pons namespace: uberon def: "Part of dorsal longitudinal fasciculus located within the pons." [BIRNLEX:1707] synonym: "dorsal longitudinal fasciculus of the pons" RELATED [NeuroNames:599] synonym: "fasciculus longitudinalis dorsalis (pontis)" RELATED OMO:0003011 [NeuroNames:599] xref: BAMS:dlfp xref: BIRNLEX:1707 xref: FMA:72492 xref: neuronames:599 {source="BIRNLEX:1707"} xref: UMLS:C0262223 {source="BIRNLEX:1707"} is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus [Term] id: UBERON:0002794 name: medial longitudinal fasciculus of pons namespace: uberon def: "A medial longitudinal fasciculus that is part of a pons [Automatically generated definition]." [OBOL:automatic] synonym: "fasciculus longitudinalis medialis (pontis)" RELATED OMO:0003011 [NeuroNames:600] synonym: "medial longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] synonym: "medial longitudinal fasciculus of the pons" RELATED [NeuroNames:600] synonym: "pons medial longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons of varolius medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: BAMS:mlfp xref: BIRNLEX:1708 xref: FMA:72493 xref: neuronames:600 {source="BIRNLEX:1708"} xref: UMLS:C0228440 {source="BIRNLEX:1708"} is_a: UBERON:0002309 ! medial longitudinal fasciculus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002795 name: frontal pole namespace: uberon def: "Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine)." [BIRNLEX:1716] subset: human_reference_atlas subset: uberon_slim synonym: "frontal pole" EXACT [FMA:74885] synonym: "frontal pole, cerebral cortex" RELATED [BAMS:FRP] synonym: "polus frontalis" EXACT OMO:0003011 [NeuroNames:57] xref: BAMS:FRP xref: BAMS:FrP xref: BAMS:frp xref: BIRNLEX:1716 xref: DHBA:146034888 xref: FMA:74885 xref: HBA:4888 xref: MBA:184 xref: neuronames:57 {source="BIRNLEX:1716"} xref: SCTID:314144002 xref: UMLS:C0149546 {source="BIRNLEX:1716"} is_a: UBERON:0009899 ! pole of cerebral hemisphere relationship: part_of UBERON:0016525 ! frontal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002796 name: motor root of trigeminal nerve namespace: uberon synonym: "dorsal motor root of v" RELATED [TAO:0000650] synonym: "dorsal motor roots of V" RELATED OMO:0003004 [ZFA:0000650] synonym: "minor root of trigeminal nerve" RELATED [NeuroNames:608] synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612] synonym: "motor root of N. V" RELATED [NeuroNames:608] synonym: "motor root of nervus v" EXACT [] synonym: "motor root of the trigeminal nerve" RELATED [NeuroNames:608] synonym: "nervus trigemini radix motoria" RELATED OMO:0003011 [NeuroNames:608] synonym: "nervus trigeminus, radix motoria" RELATED OMO:0003011 [NeuroNames:608] synonym: "nervus trigeminus, radix motorius" RELATED OMO:0003011 [NeuroNames:608] synonym: "portio minor nervi trigemini" RELATED OMO:0003011 [NeuroNames:608] synonym: "portio minor of trigeminal nerve" RELATED OMO:0003011 [NeuroNames:608] synonym: "radix motoria" RELATED OMO:0003011 [NeuroNames:608] synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612] synonym: "radix motoria nervus trigemini" EXACT OMO:0003011 [FMA:52612, FMA:TA] xref: BAMS:m5 xref: BAMS:mo5 xref: BAMS:moV xref: BAMS:mV xref: BIRNLEX:1717 xref: DHBA:12866 xref: FMA:52612 xref: MBA:93 xref: neuronames:608 {source="BIRNLEX:1717"} xref: SCTID:280189001 xref: TAO:0000650 xref: UMLS:C0228707 {source="BIRNLEX:1717"} xref: ZFA:0000650 is_a: UBERON:0004673 ! trigeminal nerve root property_value: IAO:0000116 "TODO - check ZFA" xsd:string [Term] id: UBERON:0002797 name: dorsal trigeminal tract namespace: uberon def: "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Dorsal_trigeminal_tract] comment: This tract arises from Principal trigeminal nucleus and terminates in the ipsilateral VPM nucleus of the thalamus.[WP] subset: uberon_slim synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500] synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal secondary ascending tract of V" RELATED [NeuroNames:606] synonym: "dorsal secondary ascending tract of v" EXACT [] synonym: "dorsal secondary tract of v" EXACT [] synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal trigeminal pathway" EXACT [FMA:72500] synonym: "dorsal trigemino-thalamic tract" RELATED [BAMS:tth] synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500] synonym: "dorsal trigmino-thalamic tract" RELATED [NeuroNames:606] synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500] synonym: "reticulothalamic tract" EXACT [FMA:72500] synonym: "tractus trigeminalis dorsalis" RELATED OMO:0003011 [NeuroNames:606] synonym: "tractus trigemino-thalamicus dorsalis" RELATED OMO:0003011 [NeuroNames:606] synonym: "tractus trigeminothalamicus posterior" EXACT OMO:0003011 [FMA:72500, FMA:TA] synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500] xref: BAMS:d5 xref: BAMS:tth xref: BIRNLEX:1718 xref: DHBA:12736 xref: FMA:72500 xref: neuronames:606 {source="BIRNLEX:1718"} xref: UMLS:C0175459 {source="BIRNLEX:1718"} xref: Wikipedia:Dorsal_trigeminal_tract is_a: UBERON:0004171 ! trigeminothalamic tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0003023 {source="FMA", source="NIFSTD"} ! pontine tegmentum [Term] id: UBERON:0002798 name: spinothalamic tract of pons namespace: uberon def: "Part of spinothalamic tract that is in the pontine tegmentum." [BIRNLEX:1719] synonym: "pons of varolius spinothalamic tract" EXACT [OBOL:automatic] synonym: "pons of varolius spinothalamic tract of medulla" EXACT [OBOL:automatic] synonym: "pons spinothalamic tract" EXACT [OBOL:automatic] synonym: "pons spinothalamic tract of medulla" EXACT [OBOL:automatic] synonym: "spinotectal pathway" RELATED [BAMS:stp] synonym: "spinothalamic tract of medulla of pons" EXACT [OBOL:automatic] synonym: "spinothalamic tract of medulla of pons of varolius" EXACT [OBOL:automatic] synonym: "spinothalamic tract of pons of varolius" EXACT [OBOL:automatic] synonym: "spinothalamic tract of the pons" RELATED [NeuroNames:611] synonym: "tractus spinothalamicus (pontis)" RELATED OMO:0003011 [NeuroNames:611] xref: BAMS:stp xref: BIRNLEX:1719 xref: FMA:72504 xref: MBA:277 xref: neuronames:611 {source="BIRNLEX:1719"} xref: SCTID:369026006 xref: UMLS:C0152380 {source="BIRNLEX:1719"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002799 name: fronto-orbital sulcus namespace: uberon synonym: "fronto-orbital dimple" EXACT [FMA:83768] synonym: "FROS" BROAD OMO:0003000 [BIRNLEX:1724, NIFSTD:NeuroNames_abbrevSource] synonym: "orbito-frontal sulcus" EXACT [FMA:83768] synonym: "orbitofrontal sulcus" EXACT [BM:Tel-Cx-OFS] synonym: "sulcus fronto-orbitalis" RELATED OMO:0003011 [NeuroNames:77] xref: BAMS:fros xref: BIRNLEX:1724 xref: BM:Tel-Cx-OFS xref: FMA:83768 xref: HBA:9362 xref: neuronames:77 {source="BIRNLEX:1724"} xref: UMLS:C0262240 {source="BIRNLEX:1724"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0002800 name: spinal trigeminal tract of pons namespace: uberon synonym: "spinal trigeminal tract of the pons" RELATED [NeuroNames:614] synonym: "tractus spinalis nervi trigemini (pontis)" RELATED OMO:0003011 [NeuroNames:614] xref: BAMS:sp5p xref: BIRNLEX:1725 xref: FMA:72507 xref: neuronames:614 {source="BIRNLEX:1725"} xref: SCTID:369027002 xref: UMLS:C0228456 {source="BIRNLEX:1725"} is_a: UBERON:0014761 ! spinal trigeminal tract relationship: part_of UBERON:0003023 {source="NIFSTD"} ! pontine tegmentum [Term] id: UBERON:0002801 name: stratum zonale of thalamus namespace: uberon def: "The thalamus consists chiefly of gray substance, but its upper surface is covered by a layer of white substance, named the stratum zonale." [Wikipedia:Stratum_zonale_of_thalamus] synonym: "neuraxis stratum" EXACT [FMA:83905] synonym: "stratum zonale of the thalamus" RELATED [NeuroNames:374] synonym: "stratum zonale thalami" EXACT [BIRNLEX:1727] xref: BAMS:SZ xref: BIRNLEX:1727 xref: DHBA:12085 xref: FMA:83905 xref: HBA:265505326 xref: neuronames:374 {source="BIRNLEX:1727"} xref: Wikipedia:Stratum_zonale_of_thalamus is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001897 {source="NIFSTD"} ! dorsal plus ventral thalamus [Term] id: UBERON:0002802 name: left parietal lobe namespace: uberon def: "Parietal lobe of the left hemisphere of the brain." [BIRNLEX:1728] xref: BIRNLEX:1728 xref: FMA:72974 xref: SCTID:314147009 xref: UMLS:C1281960 {source="BIRNLEX:1728"} is_a: UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0002812 ! left cerebral hemisphere property_value: RO:0002171 UBERON:0002803 [Term] id: UBERON:0002803 name: right parietal lobe namespace: uberon def: "Parietal lobe of the right hemisphere of the brain." [BIRNLEX:1729] xref: BIRNLEX:1729 xref: FMA:72973 xref: SCTID:314146000 xref: UMLS:C1281959 {source="BIRNLEX:1729"} is_a: UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0002804 name: left limbic lobe namespace: uberon def: "A limbic lobe that is part of a left cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1780 xref: FMA:72981 is_a: UBERON:0002600 ! limbic lobe relationship: part_of UBERON:0002812 ! left cerebral hemisphere [Term] id: UBERON:0002805 name: right limbic lobe namespace: uberon def: "A limbic lobe that is part of a right cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1781 xref: FMA:72980 is_a: UBERON:0002600 ! limbic lobe relationship: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0002806 name: left occipital lobe namespace: uberon def: "An occipital lobe that is part of a left cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1782 xref: FMA:72976 xref: SCTID:314150007 xref: UMLS:C1281963 {source="BIRNLEX:1782"} is_a: UBERON:0002021 ! occipital lobe relationship: part_of UBERON:0002812 ! left cerebral hemisphere property_value: RO:0002171 UBERON:0002807 [Term] id: UBERON:0002807 name: right occipital lobe namespace: uberon def: "An occipital lobe that is part of a right cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1783 xref: FMA:72975 xref: SCTID:314149007 xref: UMLS:C1281962 {source="BIRNLEX:1783"} is_a: UBERON:0002021 ! occipital lobe relationship: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0002808 name: left temporal lobe namespace: uberon def: "A temporal lobe that is part of a left cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1784 xref: FMA:72972 xref: SCTID:314158000 xref: UMLS:C1281971 {source="BIRNLEX:1784"} is_a: UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0002812 ! left cerebral hemisphere [Term] id: UBERON:0002809 name: right temporal lobe namespace: uberon def: "A temporal lobe that is part of a right cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1785 xref: FMA:72971 xref: SCTID:314157005 xref: UMLS:C1281970 {source="BIRNLEX:1785"} is_a: UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0002810 name: right frontal lobe namespace: uberon def: "A frontal cortex that is part of a right cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1786 xref: FMA:72969 xref: SCTID:314141005 xref: UMLS:C1281954 {source="BIRNLEX:1786"} is_a: UBERON:0001870 ! frontal cortex relationship: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0002811 name: left frontal lobe namespace: uberon def: "A frontal cortex that is part of a left cerebral hemisphere." [OBOL:automatic] xref: BIRNLEX:1787 xref: FMA:72970 xref: SCTID:314142003 xref: UMLS:C1281955 {source="BIRNLEX:1787"} is_a: UBERON:0001870 ! frontal cortex relationship: part_of UBERON:0002812 ! left cerebral hemisphere property_value: RO:0002171 UBERON:0002810 [Term] id: UBERON:0002812 name: left cerebral hemisphere namespace: uberon def: "A cerebral hemisphere that is in the left side of a brain." [OBOL:automatic] synonym: "left hemisphere" EXACT [BIRNLEX:1795] xref: BIRNLEX:1795 xref: FMA:61819 xref: NCIT:C32955 xref: SCTID:362323007 xref: UMLS:C0228176 {source="ncithesaurus:Left_Cerebral_Hemisphere"} is_a: UBERON:0001869 ! cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002813 name: right cerebral hemisphere namespace: uberon def: "A cerebral hemisphere that is in the right side of a brain." [OBOL:automatic] synonym: "right hemisphere" EXACT [BIRNLEX:1797] xref: BIRNLEX:1797 xref: FMA:67292 xref: NCIT:C33472 xref: SCTID:362322002 xref: UMLS:C0228175 {source="ncithesaurus:Right_Cerebral_Hemisphere"} is_a: UBERON:0001869 ! cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002814 name: posterior superior fissure of cerebellum namespace: uberon synonym: "fissura post clivalis" EXACT OMO:0003011 [FMA:83733, FMA:TA] synonym: "post-clival fissure" EXACT [FMA:83733] synonym: "postclival fissure" EXACT [FMA:83733] synonym: "posterior superior fissure" RELATED [NLXANAT:20081254] synonym: "posterior superior fissure of cerebellum" EXACT [FMA:83733] synonym: "postlunate fissure" EXACT [FMA:83733] synonym: "superior posterior cerebellar fissure" EXACT [] xref: BAMS:psf xref: FMA:83733 xref: HBA:9411 xref: MBA:1112 xref: neuronames:662 xref: NIFSTD_RETIRED:birnlex_20081254 xref: NLXANAT:20081254 xref: SCTID:314170001 is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002815 name: horizontal fissure of cerebellum namespace: uberon def: "Fissure between cerebellar hemispheric lobules VIIA and VIIBi." [NLXANAT:20081255] synonym: "fissura horizontalis" RELATED OMO:0003011 [Wikipedia:Horizontal_fissure_of_cerebellum] synonym: "fissura horizontalis cerebelli" EXACT OMO:0003011 [FMA:75135, FMA:TA] synonym: "fissura intercruralis" EXACT OMO:0003011 [FMA:75135, FMA:TA] synonym: "fissura intercruralis cerebelli" EXACT OMO:0003011 [FMA:75135, FMA:TA] synonym: "great horizontal fissure" EXACT [FMA:75135] synonym: "horizontal fissure" BROAD [] synonym: "horizontal sulcus" EXACT [] synonym: "intercrural fissure of cerebellum" EXACT [FMA:75135] xref: BAMS:hzf xref: FMA:75135 xref: HBA:9412 xref: neuronames:661 xref: NIFSTD_RETIRED:birnlex_20081255 xref: NLXANAT:20081255 xref: SCTID:314173004 xref: Wikipedia:Horizontal_fissure_of_cerebellum is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray702.png" xsd:anyURI [Term] id: UBERON:0002816 name: prepyramidal fissure of cerebellum namespace: uberon def: "Fissure between cerebellar lobules VIIBii and VIII." [NLXANAT:20081257] synonym: "fissura inferior anterior" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "fissura parafloccularis" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "fissura praepyramidalis" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "fissura prebiventralis cerebelli" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "fissura prepyramidalis" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "fissura prepyramidalis cerebelli" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138] synonym: "prepyramidal fissure" RELATED [NLXANAT:20081257] synonym: "prepyramidal fissure of cerebellum" EXACT [FMA:75138] synonym: "prepyramidal sulcus" EXACT [FMA:75138] xref: BAMS:ppf xref: BAMS:ppyf xref: FMA:75138 xref: MBA:1119 xref: neuronames:663 xref: NLXANAT:20081257 xref: SCTID:314171002 is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002817 name: secondary fissure of cerebellum namespace: uberon def: "Fissure between cerebellar lobules VIII and IX." [NLXANAT:20081258] synonym: "fissura postpyramidalis cerebelli" EXACT OMO:0003011 [FMA:84043, FMA:TA] synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043] synonym: "postpyramidal fissure" EXACT [FMA:84043] synonym: "secondary fissure" BROAD [FMA:84043] synonym: "secondary fissure of cerebellum" EXACT [FMA:84043] xref: BAMS:scf xref: BAMS:sec xref: BAMS:sf xref: FMA:84043 xref: HBA:9416 xref: MBA:3 xref: neuronames:644 xref: NIFSTD_RETIRED:birnlex_20081258 xref: NLXANAT:20081258 xref: SCTID:314169002 is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002818 name: posterolateral fissure of cerebellum namespace: uberon def: "Fissure between cerebellar lobules IX and X." [NLXANAT:20081259] synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "posterolateral fissure" BROAD [] synonym: "posterolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "prenodular fissure" EXACT [FMA:83730] synonym: "prenodular sulcus" EXACT [FMA:83730] synonym: "uvulonodular fissure" EXACT [FMA:83730] xref: BAMS:plf xref: FMA:83730 xref: HBA:9417 xref: MBA:11 xref: neuronames:649 xref: NIFSTD_RETIRED:birnlex_20081259 xref: NLXANAT:20081259 xref: SCTID:314172009 is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002822 name: macula lutea proper namespace: uberon def: "The part of the macula lutea that excludes the fovea." [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2542 xref: FMA:58671 xref: UMLS:C0934637 {source="BIRNLEX:2542"} relationship: part_of UBERON:0000053 ! macula lutea property_value: IAO:0000116 "consider obsoletion" xsd:string [Term] id: UBERON:0002823 name: clivus of fovea centralis namespace: uberon comment: NIF differs from FMA synonym: "clivus of macula lutea" EXACT [BIRNLEX:2544] synonym: "fovea centralis clivus" EXACT [FMA:58674] xref: BIRNLEX:2544 xref: FMA:58674 xref: UMLS:C0929757 {source="BIRNLEX:2544"} xref: UMLS:C0929760 {source="BIRNLEX:2544"} relationship: part_of UBERON:0001786 ! fovea centralis [Term] id: UBERON:0002824 name: vestibular ganglion namespace: uberon def: "The ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. Distributed to the maculae of the utricle and saccule and to the ampullary crests of the semicircular ducts. The vestibular fibers arise in bipolar cells in the vestibular ganglion in the internal acoustic meatus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, Wikipedia:Scarpa%27s_ganglion] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "nucleus nervi oculomotorii, pars medialis" RELATED OMO:0003011 [NeuroNames:495] synonym: "Scarpa's ganglion" EXACT [FMA:53435] synonym: "vestibular part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vestibulocochlear ganglion vestibular component" RELATED [EMAPA:17573] synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086] xref: BAMS:GvVIII xref: BIRNLEX:2549 xref: EMAPA:17573 xref: FMA:53435 xref: MA:0001086 xref: NCIT:C33870 xref: neuronames:495 {source="BIRNLEX:2549"} xref: RETIRED_EHDAA2:0002199 xref: SCTID:244450009 xref: UMLS:C0036286 {source="BIRNLEX:2549", source="ncithesaurus:Vestibular_Ganglion"} xref: UMLS:C0446706 {source="BIRNLEX:2549"} xref: VHOG:0000682 xref: Wikipedia:Scarpa%27s_ganglion is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002825 name: superior part of vestibular ganglion namespace: uberon def: "The part of the vestibular ganglion that receives fibers from the maculae of the utricle and the sacculae and the ampullae of the anterior and lateral semicircular ducts." [ISBN:0-683-40008-8, MP:0000028] subset: pheno_slim synonym: "pars superior ganglionis vestibularis" EXACT OMO:0003011 [FMA:77531, FMA:TA] synonym: "pars superior vestibularis" RELATED [MA:0002778] synonym: "vestibular ganglion superior part" EXACT [MA:0002778] xref: BIRNLEX:2551 xref: FMA:77531 xref: MA:0002778 xref: UMLS:C1186166 {source="BIRNLEX:2551"} relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002826 name: inferior part of vestibular ganglion namespace: uberon synonym: "pars inferior ganglionis vestibularis" EXACT OMO:0003011 [FMA:77532, FMA:TA] synonym: "vestibular ganglion inferior part" EXACT [MA:0002779] xref: BIRNLEX:2552 xref: FMA:77532 xref: MA:0002779 xref: UMLS:C1186167 {source="BIRNLEX:2552"} relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002827 name: vestibulocochlear ganglion namespace: uberon def: "The group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia." [MGI:smb, MP:0003703] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "acoustic ganglion" RELATED [VHOG:0000696] synonym: "acoustic ganglion VIII" EXACT [EMAPA:16982] synonym: "acoustico-vestibular VIII ganglion" EXACT [EHDAA2:0002196] synonym: "auditory ganglion" EXACT [ZFA:0000588] synonym: "auditory ganglion" RELATED [BIRNLEX:2564] synonym: "ganglion VIII" EXACT [] synonym: "gVIII" EXACT [ZFA:0000588] synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED OMO:0003011 [NeuroNames:496] synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED OMO:0003011 [NeuroNames:496] synonym: "SAG" BROAD [ZFA:0000588] synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588] synonym: "statoacoustic ganglia" EXACT [ZFA:0000588] synonym: "statoacoustic ganglion" EXACT [XAO:0004142] synonym: "statoacoustic VIII ganglion" RELATED [VHOG:0000696] synonym: "vestibulocochlear ganglia" RELATED OMO:0003004 [XAO:0004142] synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084] xref: BIRNLEX:2564 xref: EFO:0003543 xref: EHDAA2:0002196 xref: EHDAA:5569 xref: EHDAA:6653 xref: EMAPA:16982 xref: EMAPA:17571 xref: MA:0001084 xref: neuronames:496 {source="BIRNLEX:2564"} xref: TAO:0000588 xref: UMLS:C0037959 {source="BIRNLEX:2564"} xref: VHOG:0000696 xref: XAO:0004142 xref: ZFA:0000588 is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion property_value: IAO:0000116 "Consider follow MA naming scheme." xsd:string property_value: UBPROP:0000001 "The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000588", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "(During the development of the inner ear in a vertebrate embryo) As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000696", ontology="VHOG", source="PMID:21452441 Park BY, Saint-Jeannet JP, Induction and Segregation of the Vertebrate Cranial Placodes. Developmental Biology (2010)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000013 "The cell bodies of the cochlear nerve lie within the central aspect of the cochlea and are collectively known as the spiral ganglion. This name reflects the fact that the cell bodies, considered as a unit, have a spiral (or perhaps more accurately, a helical) shape, reflecting the shape of the cochlea. The terms 'cochlear nerve fiber' and 'spiral ganglion cell' are used, to some degree, interchangeably, although the former may be used to more specifically refer to the central axons of the cochlear nerve. These central axons exit the cochlea at its base, where it forms a nerve trunk. In humans, this aspect of the nerve is roughly one inch in length. It projects centrally to the brainstem, where its fibers synapse with the cell bodies of the cochlear nucleus" xsd:string {source="Wikipedia:Cochlear_nerve"} [Term] id: UBERON:0002828 name: ventral cochlear nucleus namespace: uberon def: "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]." [Wikipedia:Ventral_cochlear_nucleus] subset: uberon_slim synonym: "accessory cochlear nucleus" RELATED [NeuroNames:722] synonym: "anterior cochlear nucleus" EXACT [FMA:54621] synonym: "c1281209" EXACT [BIRNLEX:2567] synonym: "nucleus acustici accessorici" RELATED OMO:0003011 [NeuroNames:722] synonym: "nucleus cochlearis anterior" RELATED OMO:0003011 [NeuroNames:722] synonym: "nucleus cochlearis ventralis" RELATED OMO:0003011 [NeuroNames:722] synonym: "VCo" BROAD OMO:0003000 [BIRNLEX:2567, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral cochlear nuclei" RELATED [NeuroNames:722] synonym: "ventral cochlear nucleus" EXACT [FMA:54621] synonym: "ventral coclear nucleus" RELATED [BAMS:VCO] synonym: "ventral division of cochlear nucleus" RELATED [NeuroNames:722] xref: BAMS:VC xref: BAMS:VCO xref: BIRNLEX:2567 xref: BM:CV xref: DHBA:12439 xref: FMA:54621 xref: HBA:9531 xref: MBA:101 xref: neuronames:722 {source="BIRNLEX:2567"} xref: SCTID:280178008 xref: UMLS:C0175500 {source="BIRNLEX:2567"} xref: Wikipedia:Ventral_cochlear_nucleus is_a: UBERON:0001720 ! cochlear nucleus relationship: part_of UBERON:0002610 {source="NIFSTD"} ! cochlear nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png" xsd:anyURI [Term] id: UBERON:0002829 name: dorsal cochlear nucleus namespace: uberon def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [Wikipedia:Dorsal_cochlear_nucleus] subset: uberon_slim synonym: "DCo" BROAD OMO:0003000 [BIRNLEX:2569, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal cochlear nucleus" EXACT [FMA:54624] synonym: "dorsal coclear nucleus" RELATED [BAMS:DCO] synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624] synonym: "nucleus cochlearis dorsalis" RELATED OMO:0003011 [NeuroNames:721] synonym: "nucleus cochlearis posterior" RELATED OMO:0003011 [Wikipedia:Dorsal_cochlear_nucleus] synonym: "posterior cochlear nucleus" EXACT [FMA:54624] synonym: "tuberculum acousticum" EXACT [] xref: BAMS:DC xref: BAMS:DCO xref: BAMS:DCo xref: BIRNLEX:2569 xref: BM:Me-CD xref: DHBA:12438 xref: EMAPA:35289 xref: FMA:54624 xref: HBA:9530 xref: MBA:96 xref: NCIT:C32471 xref: neuronames:721 {source="BIRNLEX:2569"} xref: SCTID:280179000 xref: UMLS:C0175499 {source="BIRNLEX:2569", source="ncithesaurus:Dorsal_Cochlear_Nucleus"} xref: UMLS:C1281210 {source="BIRNLEX:2569"} xref: Wikipedia:Dorsal_cochlear_nucleus is_a: UBERON:0001720 ! cochlear nucleus relationship: part_of UBERON:0002610 {source="NIFSTD"} ! cochlear nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png" xsd:anyURI [Term] id: UBERON:0002830 name: anteroventral cochlear nucleus namespace: uberon synonym: "anterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2572] synonym: "anterior part of the ventral cochlear nucleus" RELATED [NeuroNames:723] synonym: "anterior ventral cochlear nucleus" RELATED [NeuroNames:723] synonym: "anteroventral auditory nucleus" EXACT [FMA:72571] synonym: "AVCo" BROAD OMO:0003000 [BIRNLEX:2572, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus cochlearis anteroventralis" RELATED OMO:0003011 [NeuroNames:723] synonym: "nucleus magnocellularis" EXACT [BIRNLEX:2572] synonym: "ventral cochlear nucleus, anterior part" RELATED [NeuroNames:723] synonym: "ventral coclear nucleus anterior part" RELATED [NeuroNames:723] xref: BAMS:AVCo xref: BIRNLEX:2572 xref: DHBA:12440 xref: FMA:72571 xref: HBA:9532 xref: neuronames:723 {source="BIRNLEX:2572"} xref: UMLS:C0926557 {source="BIRNLEX:2572"} is_a: UBERON:0001720 ! cochlear nucleus relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleus [Term] id: UBERON:0002831 name: posteroventral cochlear nucleus namespace: uberon synonym: "nucleus cochlearis posteroventralis" RELATED OMO:0003011 [NeuroNames:724] synonym: "posterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2573] synonym: "posterior part of the ventral cochlear nucleus" RELATED [NeuroNames:724] synonym: "posterior ventral cochlear nucleus" RELATED [NeuroNames:724] synonym: "PVCo" BROAD OMO:0003000 [BIRNLEX:2573, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral cochlear nucleus, posterior part" RELATED [NeuroNames:724] synonym: "ventral coclear nucleus posterior part" RELATED [NeuroNames:724] xref: BAMS:PVCo xref: BIRNLEX:2573 xref: DHBA:12441 xref: FMA:72572 xref: HBA:9533 xref: neuronames:724 {source="BIRNLEX:2573"} xref: UMLS:C0926558 {source="BIRNLEX:2573"} is_a: UBERON:0001720 ! cochlear nucleus relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleus [Term] id: UBERON:0002832 name: ventral nucleus of trapezoid body namespace: uberon def: "A small nucleus of the periolivary complex located laterally to the MNTB, and ventral to the MSO." [Wikipedia:Superior_olivary_complex#Ventral_nucleus_of_the_trapezoid_body_.28VNTB.29] synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] synonym: "nucleus anterior corporis trapezoidei" EXACT OMO:0003011 [FMA:72477, FMA:TA] synonym: "nucleus ventralis corporis trapezoidei" EXACT OMO:0003011 [NeuroNames:1283] synonym: "ventral trapezoid nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "VNTB" EXACT OMO:0003000 [] xref: BIRNLEX:2576 xref: DHBA:12461 xref: FMA:72477 xref: neuronames:1283 xref: SCTID:369020000 xref: UMLS:C0228437 {source="BIRNLEX:2576"} xref: UMLS:C1289449 {source="BIRNLEX:2576"} is_a: UBERON:0007633 ! nucleus of trapezoid body relationship: part_of UBERON:0002128 ! superior olivary complex relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus [Term] id: UBERON:0002833 name: medial nucleus of trapezoid body namespace: uberon def: "Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. It is not clear whether a well defined nucleus is present in humans, although humans may possess scattered cells with similar input." [BIRNLEX:2595] synonym: "MNTB" EXACT OMO:0003000 [] xref: BIRNLEX:2595 xref: DHBA:12460 xref: FMA:75732 is_a: UBERON:0007633 ! nucleus of trapezoid body relationship: part_of UBERON:0022434 {source="Wikipedia"} ! primary superior olive [Term] id: UBERON:0002834 name: cervical dorsal root ganglion namespace: uberon subset: human_reference_atlas synonym: "cervical dorsal root ganglion" EXACT [FMA:6005] synonym: "cervical spinal ganglion" EXACT [FMA:6005] xref: BIRNLEX:2599 xref: FMA:6005 xref: SCTID:278325008 xref: UMLS:C0457466 {source="BIRNLEX:2599"} is_a: UBERON:0000044 ! dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002835 name: thoracic dorsal root ganglion namespace: uberon def: "A dorsal root ganglion that is part of a thorax [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "dorsal root ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion of dorsal root of thorax" EXACT [OBOL:automatic] synonym: "ganglion spinalis of thorax" EXACT [OBOL:automatic] synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006] synonym: "thoracic spinal ganglion" EXACT [FMA:6006] synonym: "thorax dorsal root ganglion" EXACT [OBOL:automatic] synonym: "thorax ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "thorax ganglion spinalis" EXACT [OBOL:automatic] xref: BIRNLEX:2600 xref: FMA:6006 xref: SCTID:278326009 xref: UMLS:C0457467 {source="BIRNLEX:2600"} is_a: UBERON:0000044 ! dorsal root ganglion is_a: UBERON:0000961 ! thoracic ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002836 name: lumbar dorsal root ganglion namespace: uberon def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404] subset: human_reference_atlas subset: pheno_slim synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007] synonym: "lumbar spinal ganglion" EXACT [FMA:6007] xref: BIRNLEX:2601 xref: FMA:6007 xref: SCTID:278327000 xref: UMLS:C0457468 {source="BIRNLEX:2601"} is_a: UBERON:0000044 ! dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002837 name: sacral dorsal root ganglion namespace: uberon subset: human_reference_atlas synonym: "sacral dorsal root ganglion" EXACT [FMA:6008] synonym: "sacral spinal ganglion" EXACT [FMA:6008] xref: BIRNLEX:2602 xref: FMA:6008 xref: SCTID:278328005 xref: UMLS:C0457469 {source="BIRNLEX:2602"} is_a: UBERON:0000044 ! dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002838 name: first cervical dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010] synonym: "first cervical spinal ganglion" EXACT [FMA:6010] xref: BIRNLEX:2603 xref: EMAPA:25144 xref: FMA:6010 xref: UMLS:C0501468 {source="BIRNLEX:2603"} is_a: UBERON:0002834 ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002839 name: second cervical dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C2 dorsal root ganglion" EXACT [EMAPA:25155] synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315] synonym: "second cervical spinal ganglion" EXACT [FMA:6315] xref: BIRNLEX:2604 xref: EMAPA:25155 xref: FMA:6315 xref: UMLS:C0501693 {source="BIRNLEX:2604"} is_a: UBERON:0002834 ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002840 name: third cervical dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C3 dorsal root ganglion" EXACT [EMAPA:25156] synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316] synonym: "third cervical spinal ganglion" EXACT [FMA:6316] xref: BIRNLEX:2605 xref: EMAPA:25156 xref: FMA:6316 xref: UMLS:C0501694 {source="BIRNLEX:2605"} is_a: UBERON:0002834 ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002841 name: fourth cervical dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C4 dorsal root ganglion" EXACT [EMAPA:25157] synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317] synonym: "fourth cervical spinal ganglion" EXACT [FMA:6317] xref: BIRNLEX:2606 xref: EMAPA:25157 xref: FMA:6317 xref: UMLS:C0501695 {source="BIRNLEX:2606"} is_a: UBERON:0002834 ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002842 name: fifth cervical dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C5 dorsal root ganglion" EXACT [EMAPA:25158] synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318] synonym: "fifth cervical spinal ganglion" EXACT [FMA:6318] xref: BIRNLEX:2607 xref: EMAPA:25158 xref: FMA:6318 xref: UMLS:C0501696 {source="BIRNLEX:2607"} is_a: UBERON:0002834 ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002843 name: seventh cervical dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C7 dorsal root ganglion" EXACT [EMAPA:25160] synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360] synonym: "seventh cervical spinal ganglion" EXACT [FMA:6360] xref: BIRNLEX:2609 xref: EMAPA:25160 xref: FMA:6360 xref: UMLS:C0501737 {source="BIRNLEX:2609"} is_a: UBERON:0002834 ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002844 name: eighth cervical dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361] synonym: "eighth cervical spinal ganglion" EXACT [FMA:6361] xref: BIRNLEX:2610 xref: FMA:6361 xref: UMLS:C0501738 {source="BIRNLEX:2610"} is_a: UBERON:0002834 ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002845 name: first thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321] synonym: "first thoracic spinal ganglion" EXACT [FMA:6321] xref: BIRNLEX:2611 xref: EMAPA:25174 xref: FMA:6321 xref: UMLS:C0501699 {source="BIRNLEX:2611"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002846 name: second thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322] synonym: "second thoracic spinal ganglion" EXACT [FMA:6322] xref: BIRNLEX:2612 xref: EMAPA:25175 xref: FMA:6322 xref: UMLS:C0501700 {source="BIRNLEX:2612"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002847 name: third thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323] synonym: "third thoracic spinal ganglion" EXACT [FMA:6323] xref: BIRNLEX:2613 xref: EMAPA:25176 xref: FMA:6323 xref: UMLS:C0501701 {source="BIRNLEX:2613"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002848 name: fifth thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325] synonym: "fifth thoracic spinal ganglion" EXACT [FMA:6325] xref: BIRNLEX:2615 xref: EMAPA:25179 xref: FMA:6325 xref: UMLS:C0501703 {source="BIRNLEX:2615"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002849 name: sixth thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326] synonym: "sixth thoracic spinal ganglion" EXACT [FMA:6326] xref: BIRNLEX:2616 xref: EMAPA:25178 xref: FMA:6326 xref: UMLS:C0501704 {source="BIRNLEX:2616"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002850 name: seventh thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327] synonym: "seventh thoracic spinal ganglion" EXACT [FMA:6327] xref: BIRNLEX:2617 xref: EMAPA:25180 xref: FMA:6327 xref: UMLS:C0501705 {source="BIRNLEX:2617"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002851 name: eighth thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328] synonym: "eighth thoracic spinal ganglion" EXACT [FMA:6328] xref: BIRNLEX:2618 xref: EMAPA:25181 xref: FMA:6328 xref: UMLS:C0501706 {source="BIRNLEX:2618"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002852 name: ninth thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329] synonym: "ninth thoracic spinal ganglion" EXACT [FMA:6329] xref: BIRNLEX:2619 xref: EMAPA:25182 xref: FMA:6329 xref: UMLS:C0501707 {source="BIRNLEX:2619"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002853 name: tenth thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330] synonym: "tenth thoracic spinal ganglion" EXACT [FMA:6330] xref: BIRNLEX:2620 xref: EMAPA:25183 xref: FMA:6330 xref: UMLS:C0501708 {source="BIRNLEX:2620"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002854 name: eleventh thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331] synonym: "eleventh thoracic spinal ganglion" EXACT [FMA:6331] xref: BIRNLEX:2621 xref: EMAPA:25184 xref: FMA:6331 xref: UMLS:C0501709 {source="BIRNLEX:2621"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002855 name: twelfth thoracic dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332] synonym: "twelfth thoracic spinal ganglion" EXACT [FMA:6332] xref: BIRNLEX:2622 xref: EMAPA:25185 xref: FMA:6332 xref: UMLS:C0501710 {source="BIRNLEX:2622"} is_a: UBERON:0002835 ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002856 name: second lumbar dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336] synonym: "second lumbar spinal ganglion" EXACT [FMA:6336] xref: BIRNLEX:2623 xref: EMAPA:25165 xref: FMA:6336 xref: UMLS:C0501714 {source="BIRNLEX:2623"} is_a: UBERON:0002836 ! lumbar dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002857 name: first lumbar dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335] synonym: "first lumbar spinal ganglion" EXACT [FMA:6335] xref: BIRNLEX:2624 xref: EMAPA:25164 xref: FMA:6335 xref: UMLS:C0501713 {source="BIRNLEX:2624"} is_a: UBERON:0002836 ! lumbar dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002858 name: third lumbar dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337] synonym: "third lumbar spinal ganglion" EXACT [FMA:6337] xref: BIRNLEX:2625 xref: EMAPA:25166 xref: FMA:6337 xref: UMLS:C0501715 {source="BIRNLEX:2625"} is_a: UBERON:0002836 ! lumbar dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002859 name: fifth lumbar dorsal root ganglion namespace: uberon alt_id: UBERON:0003944 def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra." [MP:0001022] subset: defined_by_ordinal_series subset: human_reference_atlas subset: pheno_slim synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339] synonym: "fifth lumbar spinal ganglion" EXACT [FMA:6339] synonym: "L5 dorsal root ganglion" EXACT [MP:0001022] synonym: "L5 ganglion" RELATED [] xref: BIRNLEX:2627 xref: EMAPA:25168 xref: FMA:6339 xref: UMLS:C0501717 {source="BIRNLEX:2627"} is_a: UBERON:0002836 ! lumbar dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002860 name: first sacral dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342] synonym: "first sacral spinal ganglion" EXACT [FMA:6342] xref: BIRNLEX:2628 xref: EMAPA:25170 xref: FMA:6342 xref: UMLS:C0501720 {source="BIRNLEX:2628"} is_a: UBERON:0002837 ! sacral dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002861 name: second sacral dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343] synonym: "second sacral spinal ganglion" EXACT [FMA:6343] xref: BIRNLEX:2629 xref: EMAPA:25171 xref: FMA:6343 xref: UMLS:C0501721 {source="BIRNLEX:2629"} is_a: UBERON:0002837 ! sacral dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002862 name: third sacral dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344] synonym: "third sacral spinal ganglion" EXACT [FMA:6344] xref: BIRNLEX:2630 xref: EMAPA:25172 xref: FMA:6344 xref: UMLS:C0501722 {source="BIRNLEX:2630"} is_a: UBERON:0002837 ! sacral dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002863 name: fifth sacral dorsal root ganglion namespace: uberon subset: defined_by_ordinal_series synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346] synonym: "fifth sacral spinal ganglion" EXACT [FMA:6346] xref: BIRNLEX:2632 xref: FMA:6346 xref: UMLS:C0501724 {source="BIRNLEX:2632"} is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002864 name: accessory cuneate nucleus namespace: uberon def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [Wikipedia:Accessory_cuneate_nucleus] subset: uberon_slim synonym: "ACu" BROAD OMO:0003000 [BIRNLEX:2634, NIFSTD:NeuroNames_abbrevSource] synonym: "external cuneate nucleus" EXACT [FMA:72603] synonym: "external cuneate nucleus" RELATED [BIRNLEX:2634] synonym: "external cuneate nucleus (Monakow, Blumenau 1891)" RELATED [NeuroNames:768] synonym: "lateral cuneate nucleus" EXACT [FMA:72603] synonym: "lateral cuneate nucleus" RELATED [BIRNLEX:2634] synonym: "nucleus cuneatis externus" RELATED OMO:0003011 [NeuroNames:768] synonym: "nucleus cuneatus accessorius" RELATED OMO:0003011 [Wikipedia:Accessory_cuneate_nucleus] synonym: "nucleus cuneatus lateralis" RELATED OMO:0003011 [NeuroNames:768] synonym: "nucleus funiculi cuneatus externus" RELATED OMO:0003011 [NeuroNames:768] synonym: "nucleus Monakow" RELATED OMO:0003011 [NeuroNames:768] synonym: "nucleus of corpus restiforme" EXACT [FMA:72603] synonym: "nucleus of corpus restiforme" RELATED [BIRNLEX:2634] xref: BAMS:ACu xref: BAMS:ECU xref: BAMS:ECu xref: BIRNLEX:2634 xref: BM:Me-CX xref: EV:0100285 xref: FMA:72603 xref: HBA:9513 xref: MBA:903 xref: neuronames:768 {source="BIRNLEX:2634"} xref: SCTID:15575006 xref: UMLS:C0152397 {source="BIRNLEX:2634"} xref: Wikipedia:Accessory_cuneate_nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI property_value: RO:0002171 UBERON:0002126 {source="ABA"} property_value: RO:0002171 UBERON:0002162 {source="ABA"} property_value: RO:0002171 UBERON:0002591 {source="ABA"} property_value: RO:0002171 UBERON:0002610 {source="ABA"} property_value: RO:0002171 UBERON:0002866 {source="ABA"} property_value: RO:0002171 UBERON:0002873 {source="ABA"} property_value: RO:0002171 UBERON:0007633 {source="ABA"} [Term] id: UBERON:0002865 name: arcuate nucleus of medulla namespace: uberon synonym: "ArcM" BROAD OMO:0003000 [BIRNLEX:2635, NIFSTD:NeuroNames_abbrevSource] synonym: "arcuate hypothalamic nucleus medial part" RELATED [BAMS:ArcM] synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic] synonym: "arcuate nucleus (medulla)" RELATED [NeuroNames:775] synonym: "arcuate nucleus of hypothalamus of medulla" EXACT [OBOL:automatic] synonym: "arcuate nucleus of the medulla" RELATED [NeuroNames:775] synonym: "arcuate nucleus, medial part" RELATED [BAMS:ArcM] synonym: "arcuate nucleus-1" EXACT [FMA:72609] synonym: "arcuate nucleus-2 of medulla" EXACT [OBOL:automatic] synonym: "arcuate periventricular nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular hypothalamic nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular periventricular nucleus of medulla" EXACT [OBOL:automatic] synonym: "medial arcuate nucleus" EXACT [FMA:72609] synonym: "medulla arcuate hypothalamic nucleus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus of hypothalamus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus-2" EXACT [OBOL:automatic] synonym: "medulla arcuate periventricular nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular hypothalamic nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular periventricular nucleus" EXACT [OBOL:automatic] synonym: "nuclei arcuati" RELATED OMO:0003011 [NeuroNames:775] synonym: "nucleus arciformis pyramidalis" EXACT [BIRNLEX:2635] synonym: "nucleus arcuatus myelencephali" RELATED OMO:0003011 [NeuroNames:775] synonym: "nucleus arcuatus pyramidalis" RELATED OMO:0003011 [NeuroNames:775] xref: BAMS:ArcM xref: BIRNLEX:2635 xref: DHBA:12536 xref: FMA:72609 xref: HBA:9519 xref: neuronames:775 {source="BIRNLEX:2635"} xref: UMLS:C0228544 {source="BIRNLEX:2635"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002866 name: caudal part of spinal trigeminal nucleus namespace: uberon synonym: "caudal nucleus" EXACT [BIRNLEX:2637] synonym: "caudal nucleus (kandell)" EXACT [] synonym: "caudal part of the spinal trigeminal nucleus" RELATED [NeuroNames:771] synonym: "CSp5" BROAD OMO:0003000 [BIRNLEX:2637, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus caudalis tractus spinalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:771] synonym: "nucleus spinalis nervi trigemini, pars caudalis" RELATED OMO:0003011 [NeuroNames:771] synonym: "spinal nucleus of the trigeminal caudal part" RELATED [BAMS:SPVC] synonym: "spinal nucleus of the trigeminal nerve caudal part" RELATED [BAMS:SPVC] synonym: "spinal nucleus of the trigeminal, caudal part" RELATED [NeuroNames:771] synonym: "spinal trigeminal nucleus caudal part" RELATED [BAMS:Sp5C] synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606] synonym: "subnucleus caudalis" RELATED OMO:0003011 [NeuroNames:771] xref: BAMS:CSp5 xref: BAMS:Sp5C xref: BAMS:SPVC xref: BIRNLEX:2637 xref: DHBA:12573 xref: FMA:72606 xref: MBA:429 xref: MESH:D014275 xref: neuronames:771 {source="BIRNLEX:2637"} xref: UMLS:C0040994 {source="BIRNLEX:2637"} is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve property_value: RO:0002171 UBERON:0002126 {source="ABA"} property_value: RO:0002171 UBERON:0002162 {source="ABA"} property_value: RO:0002171 UBERON:0002591 {source="ABA"} property_value: RO:0002171 UBERON:0002610 {source="ABA"} property_value: RO:0002171 UBERON:0002864 {source="ABA"} property_value: RO:0002171 UBERON:0002873 {source="ABA"} property_value: RO:0002171 UBERON:0007633 {source="ABA"} [Term] id: UBERON:0002867 name: central gray substance of medulla namespace: uberon synonym: "central gray matter" EXACT [BIRNLEX:2638] synonym: "central gray of the medulla" RELATED [NeuroNames:756] synonym: "central gray substance of the medulla" RELATED [NeuroNames:756] synonym: "CGM" BROAD OMO:0003000 [BIRNLEX:2638, NIFSTD:NeuroNames_abbrevSource] synonym: "griseum periventriculare" RELATED OMO:0003011 [NeuroNames:756] synonym: "medullary central gray substance" EXACT [FMA:72595] xref: BAMS:CGM xref: BIRNLEX:2638 xref: DHBA:146034986 xref: FMA:72595 xref: HBA:265504914 xref: neuronames:756 {source="BIRNLEX:2638"} xref: UMLS:C0262207 {source="BIRNLEX:2638"} is_a: UBERON:0019263 ! gray matter of hindbrain is_a: UBERON:0035011 ! central gray substance relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0002868 name: commissural nucleus of vagus nerve namespace: uberon synonym: "Cm10" BROAD OMO:0003000 [BIRNLEX:2639, NIFSTD:NeuroNames_abbrevSource] synonym: "commissural nucleus of the vagus nerve" RELATED [NeuroNames:754] synonym: "commissural nucleus-1" EXACT [FMA:54597] synonym: "nucleus commissuralis" RELATED OMO:0003011 [NeuroNames:754] synonym: "nucleus commissuralis nervi vagi" RELATED OMO:0003011 [NeuroNames:754] synonym: "nucleus of inferior commissure" EXACT [FMA:54597] synonym: "nucleus of inferior commisure" EXACT [BIRNLEX:2639] xref: BAMS:Cm10 xref: BIRNLEX:2639 xref: FMA:54597 xref: neuronames:754 {source="BIRNLEX:2639"} xref: UMLS:C0175528 {source="BIRNLEX:2639"} is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011775 {source="FMA"} ! vagus nerve nucleus relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002869 name: diffuse reticular nucleus namespace: uberon synonym: "DRt" BROAD OMO:0003000 [BIRNLEX:2641, NIFSTD:NeuroNames_abbrevSource] synonym: "Koelliker-Fuse nucleus" EXACT [] synonym: "Kolliker-Fuse nucleus" RELATED [BAMS:KF] synonym: "kolliker-Fuse nucleus" EXACT [FMA:77220] synonym: "Kolliker-Fuse subnucleus" RELATED [BAMS:KF] synonym: "Kolloker-Fuse nucleus" EXACT [BIRNLEX:2641] synonym: "kvlliker-Fuse subnucleus" RELATED [NeuroNames:760] synonym: "kvlliker-Fuse subnucleus of parabrachial nucleus" RELATED [NeuroNames:760] synonym: "Kölliker-Fuse nucleus" EXACT [] synonym: "nucleus of Kolliker-Fuse" EXACT [] synonym: "nucleus reticularis diffusus" RELATED OMO:0003011 [NeuroNames:760] synonym: "nucleus reticularis diffusus (Koelliker)" RELATED OMO:0003011 [NeuroNames:760] synonym: "nucleus subparabrachialis" EXACT OMO:0003011 [] synonym: "subparabrachial nucleus" EXACT [FMA:77220] xref: BAMS:DRt xref: BAMS:KF xref: BIRNLEX:2641 xref: DHBA:12491 xref: DHBA:12518 xref: DMBA:16853 xref: FMA:72598 xref: FMA:77220 xref: neuronames:760 {source="BIRNLEX:2641"} xref: UMLS:C0175530 {source="BIRNLEX:2641"} is_a: UBERON:0007634 ! parabrachial nucleus relationship: part_of UBERON:0000988 {source="NIFSTD"} ! pons [Term] id: UBERON:0002870 name: dorsal motor nucleus of vagus nerve namespace: uberon def: "A cranial nerve nucleus for the vagus nerve in the medulla that lies under the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. The cell bodies for the preganglionic parasympathetic vagal neurons that innervate the heart reside in the nucleus ambiguus.[WP,unvetted]." [Wikipedia:Dorsal_nucleus_of_vagus_nerve] subset: uberon_slim synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592] synonym: "dorsal motor nucleus" RELATED [NeuroNames:755] synonym: "dorsal motor nucleus of the vagus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of the vagus (vagal nucleus)" EXACT [DHBA:10N] synonym: "dorsal motor nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of vagus" RELATED [BAMS:10] synonym: "dorsal motor nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of vagus X nerve" EXACT [MA:0001036] synonym: "dorsal motor vagal nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal vagal nucleus" EXACT [BIRNLEX:2642] synonym: "dorsal vagal nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "nucleus alaris" EXACT [BIRNLEX:2642] synonym: "nucleus alaris (Oertel)" RELATED OMO:0003011 [NeuroNames:755] synonym: "nucleus dorsalis motorius nervi vagi" RELATED OMO:0003011 [NeuroNames:755] synonym: "nucleus dorsalis nervi vagi" RELATED OMO:0003011 [NeuroNames:755] synonym: "nucleus posterior nervi vagi" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "nucleus vagalis dorsalis" RELATED OMO:0003011 [NeuroNames:755] synonym: "posterior nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "vagus nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] xref: BAMS:10 xref: BAMS:DMX xref: BIRNLEX:2642 xref: BM:DX xref: CALOHA:TS-2381 xref: DHBA:12550 xref: EHDAA2:0004649 xref: EMAPA:35291 xref: EV:0100287 xref: FMA:54592 xref: HBA:9545 xref: MA:0001036 xref: MBA:839 xref: NCIT:C32475 xref: neuronames:755 {source="BIRNLEX:2642"} xref: SCTID:52884007 xref: UMLS:C0152401 {source="BIRNLEX:2642"} xref: UMLS:C0926535 {source="ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve"} xref: Wikipedia:Dorsal_nucleus_of_vagus_nerve is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011778 ! motor nucleus of vagal nerve relationship: part_of UBERON:0001896 {source="MA", source="NIF"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/82/Gray697.png" xsd:anyURI property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} property_value: UBPROP:0000012 "The FMA includes a separate sensoryt nucleus" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002871 name: hypoglossal nucleus namespace: uberon def: "Nucleus forming a longitudinal cell column in the medulla, close beneath the floor of the 4th ventricle, containing motor neurons that innervate the muscles of the tongue (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 453)." [BIRNLEX:2644] subset: pheno_slim subset: uberon_slim synonym: "hypoglossal nerve nucleus" EXACT [FMA:54505] synonym: "hypoglossal nucleus" EXACT [FMA:54505] synonym: "hypoglossal XII nucleus" EXACT [MA:0001039] synonym: "nucleus hypoglossalis" RELATED OMO:0003011 [NeuroNames:757] synonym: "nucleus nervi hypoglossi" EXACT OMO:0003011 [FMA:54505, FMA:TA] synonym: "nucleus nervi hypoglossi" RELATED OMO:0003011 [Wikipedia:Hypoglossal_nucleus] synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505] synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505] xref: BAMS:12 xref: BAMS:12N xref: BAMS:XII xref: BIRNLEX:2644 xref: BM:XII xref: DHBA:12545 xref: EHDAA2:0004635 xref: EMAPA:35416 xref: EV:0100286 xref: FMA:54505 xref: HBA:9557 xref: MA:0001039 xref: MBA:773 xref: NCIT:C12899 xref: ncithesaurus:Nucleus_of_the_Hypoglossal_Nerve xref: neuronames:757 {source="BIRNLEX:2644"} xref: SCTID:47361005 xref: UMLS:C0228802 {source="BIRNLEX:2644", source="ncithesaurus:Hypoglossal_Nucleus"} xref: VHOG:0001358 xref: Wikipedia:Hypoglossal_nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} [Term] id: UBERON:0002872 name: inferior salivatory nucleus namespace: uberon def: "In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_salivatory_nucleus] subset: uberon_slim synonym: "inferior salivary nucleus" EXACT [GO:0021752] synonym: "inferior salivatary nucleus" EXACT [] synonym: "nucleus salivarius inferior" RELATED OMO:0003011 [NeuroNames:764] synonym: "nucleus salivatorius caudalis" RELATED OMO:0003011 [NeuroNames:764] synonym: "nucleus salivatorius inferior" RELATED OMO:0003011 [Wikipedia:Inferior_salivatory_nucleus] synonym: "nucleus salivatorius inferior nervi glossopharyngei" RELATED OMO:0003011 [NeuroNames:764] xref: BAMS:IS xref: BAMS:ISN xref: BIRNLEX:2645 xref: DHBA:12544 xref: EHDAA2:0004641 xref: FMA:72601 xref: HBA:9569 xref: MBA:106 xref: neuronames:764 {source="BIRNLEX:2645"} xref: UMLS:C0175534 {source="BIRNLEX:2645"} xref: Wikipedia:Inferior_salivatory_nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray843.png" xsd:anyURI property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002877 {source="ABA"} [Term] id: UBERON:0002873 name: interpolar part of spinal trigeminal nucleus namespace: uberon synonym: "interpolar part of the spinal trigeminal nucleus" RELATED [NeuroNames:817] synonym: "nucleus interpolaris tractus spinalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:817] synonym: "nucleus of spinal tract of N. V (subnucleus interpolaris)" RELATED [NeuroNames:817] synonym: "nucleus spinalis nervi trigemini, pars interpolaris" RELATED OMO:0003011 [NeuroNames:817] synonym: "spinal nucleus of the trigeminal interpolar part" RELATED [BAMS:SPVI] synonym: "spinal nucleus of the trigeminal nerve interpolar part" RELATED [BAMS:SPVI] synonym: "spinal nucleus of the trigeminal, interpolar part" RELATED [NeuroNames:817] synonym: "spinal trigeminal nucleus, interpolar part" RELATED [NeuroNames:817] xref: BAMS:ISp5 xref: BAMS:Sp5I xref: BAMS:SPVI xref: BIRNLEX:2646 xref: DHBA:12578 xref: FMA:235324 xref: HBA:9678 xref: MBA:437 xref: neuronames:817 {source="BIRNLEX:2646"} xref: UMLS:C0175418 {source="BIRNLEX:2646"} is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve property_value: RO:0002171 UBERON:0002126 {source="ABA"} property_value: RO:0002171 UBERON:0002162 {source="ABA"} property_value: RO:0002171 UBERON:0002591 {source="ABA"} property_value: RO:0002171 UBERON:0002610 {source="ABA"} property_value: RO:0002171 UBERON:0002864 {source="ABA"} property_value: RO:0002171 UBERON:0002866 {source="ABA"} property_value: RO:0002171 UBERON:0007633 {source="ABA"} [Term] id: UBERON:0002874 name: lateral pericuneate nucleus namespace: uberon synonym: "LPCu" BROAD OMO:0003000 [BIRNLEX:2647, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pericuneatus lateralis" RELATED OMO:0003011 [NeuroNames:769] xref: BAMS:LPCu xref: BIRNLEX:2647 xref: DHBA:12526 xref: FMA:72604 xref: HBA:9581 xref: neuronames:769 {source="BIRNLEX:2647"} xref: UMLS:C0262271 {source="BIRNLEX:2647"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002875 name: medial pericuneate nucleus namespace: uberon synonym: "MPCu" BROAD OMO:0003000 [BIRNLEX:2648, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pericuneatus medialis" RELATED OMO:0003011 [NeuroNames:770] xref: BAMS:MPCu xref: BIRNLEX:2648 xref: DHBA:12527 xref: FMA:72605 xref: HBA:9584 xref: neuronames:770 {source="BIRNLEX:2648"} xref: UMLS:C0262288 {source="BIRNLEX:2648"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002876 name: nucleus intercalatus namespace: uberon alt_id: UBERON:0002878 comment: two NIF classes with the same name synonym: "In" BROAD OMO:0003000 [BIRNLEX:2654, NIFSTD:NeuroNames_abbrevSource] synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] synonym: "intercalated nucleus of the medulla" RELATED [NeuroNames:759] synonym: "nucleus intercalates" RELATED [BAMS:NIS] synonym: "nucleus intercalatus (Staderini)" RELATED OMO:0003011 [NeuroNames:759] synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597] synonym: "nucleus of Staderini" EXACT [] synonym: "nucleus Staderini" EXACT [BIRNLEX:2651, BIRNLEX:2654] xref: BAMS:In xref: BAMS:NIS xref: BIRNLEX:2651 xref: BIRNLEX:2654 xref: DHBA:12612 xref: DMBA:16339 xref: EV:0100291 xref: FMA:72597 xref: HBA:9572 xref: MBA:161 xref: neuronames:759 {source="BIRNLEX:2654", source="BIRNLEX:2651"} xref: SCTID:369077004 xref: UMLS:C0152398 {source="BIRNLEX:2654", source="BIRNLEX:2651"} xref: UMLS:C1289504 {source="BIRNLEX:2654", source="BIRNLEX:2651"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002877 name: parasolitary nucleus namespace: uberon synonym: "nucleus fasciculus solitarius" EXACT [BIRNLEX:2653] synonym: "nucleus juxtasolitarius" EXACT [BIRNLEX:2653] synonym: "PSol" BROAD OMO:0003000 [BIRNLEX:2653, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PAS xref: BAMS:PSol xref: BIRNLEX:2653 xref: DHBA:12571 xref: FMA:77091 xref: MBA:859 xref: neuronames:7 xref: OldNeuroNames:1639234958 {source="BIRNLEX:2653"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata property_value: RO:0002171 UBERON:0001719 {source="ABA"} property_value: RO:0002171 UBERON:0002127 {source="ABA"} property_value: RO:0002171 UBERON:0002154 {source="ABA"} property_value: RO:0002171 UBERON:0002155 {source="ABA"} property_value: RO:0002171 UBERON:0002559 {source="ABA"} property_value: RO:0002171 UBERON:0002673 {source="ABA"} property_value: RO:0002171 UBERON:0002870 {source="ABA"} property_value: RO:0002171 UBERON:0002871 {source="ABA"} property_value: RO:0002171 UBERON:0002872 {source="ABA"} [Term] id: UBERON:0002879 name: peritrigeminal nucleus namespace: uberon synonym: "nucleus peritrigeminalis" RELATED OMO:0003011 [NeuroNames:762] synonym: "Pe5" BROAD OMO:0003000 [BIRNLEX:2655, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Pe5 xref: BIRNLEX:2655 xref: DHBA:12658 xref: FMA:72600 xref: HBA:9633 xref: neuronames:762 {source="BIRNLEX:2655"} xref: UMLS:C0262307 {source="BIRNLEX:2655"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002880 name: pontobulbar nucleus namespace: uberon synonym: "corpus pontobulbare" RELATED OMO:0003011 [NeuroNames:774] synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608] synonym: "nucleus pontobulbaris" RELATED OMO:0003011 [NeuroNames:774] synonym: "PnB" BROAD OMO:0003000 [BIRNLEX:2656, NIFSTD:NeuroNames_abbrevSource] synonym: "pontobulbar body" EXACT [FMA:72608] xref: BAMS:PnB xref: BIRNLEX:2656 xref: DHBA:12614 xref: FMA:72608 xref: HBA:9636 xref: neuronames:774 {source="BIRNLEX:2656"} xref: UMLS:C0175532 {source="BIRNLEX:2656"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002881 name: sublingual nucleus namespace: uberon def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [Wikipedia:Sublingual_nucleus] subset: uberon_slim synonym: "inferior central nucleus" RELATED INCONSISTENT [Wikipedia:Sublingual_nucleus] synonym: "nucleus of roller" EXACT [FMA:68574] synonym: "nucleus of roller" RELATED [Wikipedia:Sublingual_nucleus] synonym: "nucleus parvocellularis nervi hypoglossi" RELATED OMO:0003011 [NeuroNames:763] synonym: "nucleus Roller" RELATED OMO:0003011 [NeuroNames:763] synonym: "nucleus sublingualis" RELATED OMO:0003011 [Wikipedia:Sublingual_nucleus] synonym: "Roller's nucleus" EXACT [] synonym: "SLg" BROAD OMO:0003000 [BIRNLEX:2657, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:NR xref: BAMS:Ro xref: BAMS:SLg xref: BIRNLEX:2657 xref: DHBA:12654 xref: FMA:68574 xref: HBA:9627 xref: MBA:177 xref: neuronames:763 {source="BIRNLEX:2657"} xref: SCTID:369076008 xref: UMLS:C0228552 {source="BIRNLEX:2657"} xref: Wikipedia:Sublingual_nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata property_value: RO:0002171 UBERON:0002160 {source="ABA"} [Term] id: UBERON:0002882 name: supraspinal nucleus namespace: uberon synonym: "nucleus substantiae grisea ventralis" RELATED OMO:0003011 [NeuroNames:776] synonym: "nucleus substantiae griseae ventralis" RELATED OMO:0003011 [NeuroNames:776] synonym: "nucleus supraspinalis" RELATED OMO:0003011 [NeuroNames:776] synonym: "SSp" BROAD OMO:0003000 [BIRNLEX:2658, NIFSTD:NeuroNames_abbrevSource] xref: BIRNLEX:2658 xref: BM:SSp xref: DHBA:12661 xref: EV:0100282 xref: FMA:74507 xref: HBA:9694 xref: neuronames:776 {source="BIRNLEX:2658"} xref: UMLS:C0175538 {source="BIRNLEX:2658"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002883 name: central amygdaloid nucleus namespace: uberon def: "The output region of the amygdala responsible for controlling responses (Phelps & LeDoux, 2005, http://www.ncbi.nlm.nih.gov/pubmed/ 16242399)." [BIRNLEX:2682] subset: human_reference_atlas synonym: "amygdala central nucleus" RELATED [BTO:0002686] synonym: "central amygdala" EXACT [XAO:0004542] synonym: "central amygdala" RELATED [] synonym: "central amygdalar nucleus" RELATED [NeuroNames:243] synonym: "central nuclear group" RELATED [DHBA:10363] synonym: "central nucleus amygdala" RELATED [NeuroNames:243] synonym: "central nucleus of amygda" EXACT [BIRNLEX:2682] synonym: "central nucleus of amygdala" EXACT [FMA:74047] synonym: "central nucleus of the amygdala" RELATED [BAMS:CEA] synonym: "nucleus amygdalae centralis" RELATED [BTO:0002686] synonym: "nucleus amygdaloideus centralis" RELATED OMO:0003011 [NeuroNames:243] synonym: "nucleus centralis amygdalae" RELATED OMO:0003011 [NeuroNames:243] xref: BAMS:ACE xref: BAMS:Ce xref: BAMS:CEA xref: BAMS:CeA xref: BIRNLEX:2682 xref: BM:Tel-Am-ACE xref: BTO:0002686 xref: DHBA:10363 xref: EMAPA:35204 xref: EV:0100191 xref: FMA:74047 xref: HBA:4359 xref: MA:0002923 xref: MBA:536 xref: MESH:D066274 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:243 {source="BIRNLEX:2682"} xref: PBA:10121 xref: UMLS:C0175219 {source="BIRNLEX:2682"} xref: XAO:0004542 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002884 name: intercalated amygdaloid nuclei namespace: uberon def: "Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)." [BIRNLEX:2683] synonym: "intercalated amygdalar nuclei" RELATED [NeuroNames:250] synonym: "intercalated amygdalar nucleus" RELATED [BAMS:IA] synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868] synonym: "intercalated amygdaloid nucleus" EXACT [FMA:61868] synonym: "intercalated cell islands" RELATED [BAMS:I] synonym: "intercalated masses" RELATED [NeuroNames:250] synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868] synonym: "intercalated nuclei amygdala" RELATED [NeuroNames:250] synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868] synonym: "intercalated nuclei of the amygdala" RELATED [BAMS:I, BAMS:IA] synonym: "intercalated nucleus of the amygdala" EXACT [BIRNLEX:2683] synonym: "massa intercalata" EXACT [BIRNLEX:2683] synonym: "massa intercalata of amygdala" EXACT [BIRNLEX:2683] synonym: "nucleus amygdalae intercalatus" RELATED OMO:0003011 [NeuroNames:250] synonym: "nucleus intercalatus amygdalae" RELATED OMO:0003011 [NeuroNames:250] xref: BAMS:I xref: BAMS:IA xref: BIRNLEX:2683 xref: DHBA:10378 xref: DMBA:15876 xref: EMAPA:35434 xref: FMA:61868 xref: HBA:4375 xref: MA:0002925 xref: MBA:1105 xref: neuronames:250 {source="BIRNLEX:2683"} xref: PBA:10132 xref: UMLS:C0262259 {source="BIRNLEX:2683"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002885 name: accessory basal amygdaloid nucleus namespace: uberon synonym: "accessory basal nucleus" RELATED [NeuroNames:249] synonym: "accessory basal nucleus of amygdala" EXACT [BIRNLEX:2686] synonym: "accessory basal nucleus of the amygdala" RELATED [NeuroNames:249] synonym: "basal amygdaloid nucleus, medial part" EXACT [BIRNLEX:2686] synonym: "basomedial nucleus (accessory basal nucleus)" EXACT [DHBA:10369] synonym: "basomedial nucleus (de olmos)" EXACT [BIRNLEX:2686] synonym: "basomedial nucleus of amygdala" RELATED [NeuroNames:249] synonym: "basomedial nucleus of the amygdala" RELATED [NeuroNames:249] synonym: "medial principal nucleus" RELATED [BIRNLEX:2686] synonym: "nucleus amygdalae basalis accessorius" RELATED OMO:0003011 [NeuroNames:249] synonym: "nucleus amygdaloideus basalis, pars medialis" RELATED OMO:0003011 [NeuroNames:249] synonym: "nucleus amygdaloideus basomedialis" RELATED OMO:0003011 [NeuroNames:249] synonym: "nucleus basalis accessorius amygdalae" RELATED OMO:0003011 [NeuroNames:249] xref: BAMS:ABA xref: BAMS:BAM xref: BIRNLEX:2686 xref: DHBA:10369 xref: FMA:61867 xref: HBA:4350 xref: neuronames:249 {source="BIRNLEX:2686"} xref: UMLS:C0175223 {source="BIRNLEX:2686"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex [Term] id: UBERON:0002886 name: lateral amygdaloid nucleus namespace: uberon def: "The sensory interface of the amygdala where plasticity is mediated (Phelps & LeDoux, 2005, http://www.ncbi.nlm.nih.gov/pubmed/ 16242399)." [BIRNLEX:2687] subset: human_reference_atlas synonym: "lateral amygdala" RELATED [] synonym: "lateral amygdalar nucleus" RELATED [NeuroNames:245] synonym: "lateral nucleus of amygdala" EXACT [FMA:61866] synonym: "lateral nucleus of the amygdala" RELATED [NeuroNames:245] synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866] synonym: "medial principal nucleus" RELATED [BIRNLEX:2687] synonym: "nucleus amygdalae lateralis" RELATED [BTO:0002704] synonym: "nucleus amygdaloideus lateralis" RELATED OMO:0003011 [NeuroNames:245] synonym: "nucleus lateralis amygdalae" RELATED OMO:0003011 [NeuroNames:245] xref: BAMS:ALA xref: BAMS:LA xref: BAMS:La xref: BIRNLEX:2687 xref: BM:Tel-Am-ALA xref: BTO:0002704 xref: DHBA:10367 xref: DMBA:15944 xref: EMAPA:35476 xref: FMA:61866 xref: HBA:4378 xref: MA:0002926 xref: MBA:131 xref: neuronames:245 {source="BIRNLEX:2687"} xref: PBA:10116 xref: UMLS:C0175221 {source="BIRNLEX:2687"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002887 name: basal amygdaloid nucleus namespace: uberon synonym: "basal nucleus of the amygdala" RELATED [NeuroNames:246] synonym: "basolateral amygaloid nucleus" EXACT [BIRNLEX:2692] synonym: "basolateral amygdalar nucleus" EXACT [BIRNLEX:2692] synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855] synonym: "basolateral nucleus (de olmos)" EXACT [] synonym: "basolateral nucleus of amygdala" RELATED [NeuroNames:246] synonym: "basolateral nucleus of the amygdala" RELATED [NeuroNames:246] synonym: "intermediate principal nucleus" EXACT [FMA:68855] synonym: "nucleus amygdalae basalis" RELATED OMO:0003011 [NeuroNames:246] synonym: "nucleus amygdalae basalis lateralis" EXACT OMO:0003011 [FMA:68855, FMA:TA] synonym: "nucleus amygdaloideus basalis" RELATED OMO:0003011 [NeuroNames:246] synonym: "nucleus amygdaloideus basolateralis" RELATED OMO:0003011 [NeuroNames:246] synonym: "nucleus basalis amygdalae" RELATED OMO:0003011 [NeuroNames:246] xref: BAMS:ABL xref: BAMS:BL xref: BAMS:BLA xref: BIRNLEX:2692 xref: EMAPA:35167 xref: FMA:68855 xref: HBA:4341 xref: MA:0002921 xref: MBA:295 xref: neuronames:246 {source="BIRNLEX:2692"} xref: UMLS:C0175222 {source="BIRNLEX:2692"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex property_value: RO:0002171 UBERON:0002023 {source="ABA"} [Term] id: UBERON:0002888 name: lateral part of basal amygdaloid nucleus namespace: uberon synonym: "lateral basal nucleus of amygdala" EXACT [BIRNLEX:2695] synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857] synonym: "lateral division of basal nucleus" EXACT [BIRNLEX:2695] synonym: "lateral division of the basal nucleus" EXACT [FMA:68857] synonym: "lateral part of the basal amygdalar nucleus" RELATED [NeuroNames:247] synonym: "lateral part of the basolateral nucleus" RELATED [NeuroNames:247] synonym: "nucleus amygdalae basalis, pars lateralis" RELATED OMO:0003011 [NeuroNames:247] synonym: "nucleus amygdaloideus basalis, pars lateralis magnocellularis" RELATED OMO:0003011 [NeuroNames:247] synonym: "nucleus basalis lateralis amygdalae" RELATED OMO:0003011 [NeuroNames:247] xref: BAMS:BAL xref: BIRNLEX:2695 xref: FMA:68857 xref: neuronames:247 {source="BIRNLEX:2695"} xref: UMLS:C0694601 {source="BIRNLEX:2695"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus [Term] id: UBERON:0002889 name: medial part of basal amygdaloid nucleus namespace: uberon subset: human_reference_atlas synonym: "basomedial amygdalar nucleus" EXACT [ABA:BMA] synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858, MA:0002922] synonym: "basomedial amygdaloid nucleus anterior part" RELATED [BAMS:BMA] synonym: "basomedial amygdaloid nucleus anterior subdivision" RELATED [BAMS:BMA] synonym: "basomedial amygdaloid nucleus, anterior part" RELATED [BAMS:BMA] synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858] synonym: "medial division of basal nucleus" EXACT [FMA:68858] synonym: "medial part of the basal amygdalar nucleus" RELATED [NeuroNames:248] synonym: "medial part of the basolateral nucleus" RELATED [NeuroNames:248] synonym: "nucleus amygdalae basalis medialis" EXACT OMO:0003011 [FMA:68858, FMA:TA] synonym: "nucleus amygdalae basalis, pars medialis" RELATED OMO:0003011 [NeuroNames:248] synonym: "nucleus amygdaloideus basalis pars lateralis parvocellularis" RELATED OMO:0003011 [NeuroNames:248] synonym: "nucleus basalis medialis amygdalae" RELATED OMO:0003011 [NeuroNames:248] xref: BAMS:ABM xref: BAMS:BM xref: BAMS:BMA xref: BIRNLEX:2696 xref: DMBA:15947 xref: EMAPA:35168 xref: FMA:68858 xref: MA:0002922 xref: MBA:319 xref: neuronames:248 {source="BIRNLEX:2696"} xref: UMLS:C1134422 {source="BIRNLEX:2696"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002890 name: anterior amygdaloid area namespace: uberon subset: human_reference_atlas synonym: "anterior amygaloid area" EXACT [BIRNLEX:2698] synonym: "anterior amygdalar area" EXACT [BIRNLEX:2698] synonym: "anterior cortical nucleus" RELATED [BIRNLEX:2698] synonym: "area amydaliformis anterior" RELATED OMO:0003011 [NeuroNames:239] synonym: "area amygdaloidea anterior" RELATED OMO:0003011 [NeuroNames:239] synonym: "area anterior amygdalae" RELATED OMO:0003011 [NeuroNames:239] xref: BAMS:AA xref: BAMS:AAA xref: BIRNLEX:2698 xref: BM:Tel-Am-AAA xref: DHBA:10362 xref: DMBA:15994 xref: EMAPA:35127 xref: FMA:61861 xref: HBA:265504476 xref: MA:0002919 xref: MBA:23 xref: neuronames:239 {source="BIRNLEX:2698"} xref: PBA:10103 xref: UMLS:C0175215 {source="BIRNLEX:2698"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002891 name: cortical amygdaloid nucleus namespace: uberon def: "Three layered structure that is located in the caudal aspect of the amygdala bordering the periamygdaloid cortex laterally." [BIRNLEX:2700] subset: human_reference_atlas synonym: "cortex periamygdaloideus" RELATED OMO:0003011 [NeuroNames:240] synonym: "cortical amygdala" RELATED [] synonym: "cortical amygdalar area" RELATED [NeuroNames:240] synonym: "cortical amygdalar nucleus" RELATED [NeuroNames:240] synonym: "nucleus amygdalae corticalis" RELATED [BTO:0002703] synonym: "nucleus corticalis amygdalae" RELATED OMO:0003011 [NeuroNames:240] synonym: "posterior cortical amygdalar nucleus" RELATED [NeuroNames:2640] synonym: "posterior cortical amygdaloid nucleus" EXACT [BIRNLEX:2700] synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862] synonym: "posterior cortical nucleus of the amygdala" RELATED [BAMS:ACOP, BAMS:Cop] synonym: "ventral cortical amygdaloid nucleus" RELATED [NeuroNames:240] synonym: "ventral cortical nucleus" RELATED [NeuroNames:240] xref: BAMS:ACOP xref: BAMS:PCo xref: BIRNLEX:2700 xref: BTO:0002703 xref: EMAPA:35254 xref: EV:0100193 xref: FMA:61862 xref: MA:0002924 xref: MBA:631 xref: neuronames:240 {source="BIRNLEX:2700"} xref: neuronames:2640 xref: UMLS:C0175216 {source="BIRNLEX:2700"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002892 name: medial amygdaloid nucleus namespace: uberon subset: human_reference_atlas synonym: "medial amygalar nucleus" EXACT [BIRNLEX:2701] synonym: "medial amygdala" RELATED [] synonym: "medial amygdalar nucleus" RELATED [NeuroNames:241] synonym: "medial amygdaloid nucleus principal part" RELATED [BAMS:MeA] synonym: "medial nucleus of amygdala" EXACT [FMA:74046] synonym: "medial nucleus of the amygdala" RELATED [BAMS:MEA] synonym: "nucleus amygdalae medialis" RELATED [BTO:0002702] synonym: "nucleus amygdaloideus medialis" RELATED OMO:0003011 [NeuroNames:241] synonym: "nucleus medialis amygdalae" RELATED OMO:0003011 [NeuroNames:241] xref: BAMS:Me xref: BAMS:MEA xref: BIRNLEX:2701 xref: BM:Tel-Am-AME xref: BTO:0002702 xref: EMAPA:35543 xref: EV:0100192 xref: FMA:74046 xref: MA:0002927 xref: MBA:403 xref: neuronames:241 {source="BIRNLEX:2701"} xref: UMLS:C0175217 {source="BIRNLEX:2701"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002893 name: nucleus of lateral olfactory tract namespace: uberon comment: part of amygdala in FMA but this leads to inconsistency when combined with ABA partitions synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865] synonym: "NLOT" EXACT OMO:0003000 [] synonym: "nucleus of the lateral olfactory tract" RELATED [NeuroNames:242] synonym: "nucleus of the lateral olfactory tract (ganser)" EXACT [BIRNLEX:2702] synonym: "nucleus of the olfactory tract" RELATED [BAMS:LOT] synonym: "nucleus of tractus olfactorius lateralis" RELATED OMO:0003011 [NeuroNames:242] synonym: "nucleus striae olfactoriae lateralis" RELATED OMO:0003011 [NeuroNames:242] xref: BAMS:LOT xref: BAMS:NLOT xref: BIRNLEX:2702 xref: BM:Tel-NLOT xref: DHBA:10309 xref: DMBA:15951 xref: EMAPA:35599 xref: FMA:61865 xref: HBA:4385 xref: MBA:619 xref: neuronames:242 {source="BIRNLEX:2702"} xref: UMLS:C0175218 {source="BIRNLEX:2702"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002894 ! olfactory cortex property_value: RO:0002171 UBERON:0002266 {source="ABA"} property_value: RO:0002171 UBERON:0002590 {source="ABA"} property_value: RO:0002171 UBERON:0004069 {source="ABA"} [Term] id: UBERON:0002894 name: olfactory cortex namespace: uberon def: "Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas." [BIRNLEX:2707] subset: pheno_slim subset: uberon_slim synonym: "archaeocortex" RELATED [BTO:0001446] synonym: "archeocortex" RELATED [BTO:0001446] synonym: "olfactory areas" RELATED [BAMS:OLF] synonym: "olfactory lobe" RELATED [MA:0000193] xref: BAMS:OLF xref: BIRNLEX:2707 xref: BTO:0001446 xref: EHDAA2:0001289 xref: EHDAA:5482 xref: EMAPA:17779 xref: FMA:276600 xref: HBA:265504406 xref: MA:0000193 xref: MESH:D066194 xref: neuronames:2275 xref: UMLS:C0162434 {source="BIRNLEX:2707"} xref: VHOG:0000325 xref: Wikipedia:Olfactory_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="VHOG"} ! cerebral cortex relationship: part_of UBERON:0005366 {source="MA"} ! olfactory lobe property_value: IAO:0000116 "consider relationship: receives_input_from UBERON:0002264 olfactory bulb" xsd:string property_value: UBPROP:0000001 "That portion of the cerebral cortex that, with the palaeocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archaeocortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals[BTO:0001446]." xsd:string {source="BTO:0001446"} property_value: UBPROP:0000001 "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO][GO:0021989]." xsd:string {source="GO:0021989"} property_value: UBPROP:0000003 "(In mammals) Odorant detection is mediated by millions of olfactory sensory neurons located in the olfactory epithelium lining the nasal cavity. These neurons transmit sensory signals to the olfactory bulb of the brain, which in turn sends signals to the olfactory cortex.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000325", ontology="VHOG", source="DOI:10.1111/j.1753-4887.2004.tb00097.x Buck LB, Olfactory receptors and odor coding in mammals. Nutrition Reviews (2008)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002895 name: secondary olfactory cortex namespace: uberon def: "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed)." [BIRNLEX:2709] subset: uberon_slim synonym: "entorhinal cortex" RELATED INCONSISTENT [FMA:72356] synonym: "secondary olfactory areas" EXACT [BIRNLEX:2709] synonym: "secondary olfactory cortex" EXACT [FMA:72356] synonym: "secondary olfactory cortical area (carpenter)" EXACT [] xref: BAMS:Ent xref: BIRNLEX:2709 xref: BTO:0004345 xref: EV:0100179 xref: MESH:D018728 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2056 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex relationship: part_of UBERON:0002894 {source="NIF"} ! olfactory cortex property_value: UBPROP:0000012 "FMA considers this a syn of entorhinal cortex. See also brodman definition" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002896 name: telodiencephalic fissure namespace: uberon synonym: "fissura telo-diencephalica" RELATED OMO:0003011 [NeuroNames:28] synonym: "TDF" BROAD OMO:0003000 [BIRNLEX:4001, NIFSTD:NeuroNames_abbrevSource] synonym: "telo-diencephalic fissure" EXACT [FMA:83726] xref: BAMS:tdf xref: BIRNLEX:4001 xref: FMA:83726 xref: neuronames:28 {source="BIRNLEX:4001"} xref: UMLS:C0262340 {source="BIRNLEX:4001"} is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure [Term] id: UBERON:0002897 name: cistern of lamina terminalis namespace: uberon synonym: "CISLT" BROAD OMO:0003000 [BIRNLEX:4002, NIFSTD:NeuroNames_abbrevSource] synonym: "cistern of the lamina terminalis" RELATED [NeuroNames:29] synonym: "cisterna lamina terminalis" EXACT [BIRNLEX:4002] synonym: "cisterna laminae terminalis" RELATED OMO:0003011 [NeuroNames:29] synonym: "lamina terminalis cistern" EXACT [FMA:74516] xref: BAMS:cislt xref: BIRNLEX:4002 xref: FMA:74516 xref: NCIT:C32922 xref: neuronames:29 {source="BIRNLEX:4002"} xref: SCTID:12692002 xref: UMLS:C0228153 {source="ncithesaurus:Lamina_Terminalis_Cistern", source="BIRNLEX:4002"} is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0002898 name: chiasmatic cistern namespace: uberon def: "The region of the subarachnoid space that is located below and anterior to the optic chiasm." [ISBN:0-683-40008-8, MP:0009028] subset: pheno_slim subset: uberon_slim synonym: "CCIS" BROAD OMO:0003000 [BIRNLEX:4003, NIFSTD:NeuroNames_abbrevSource] synonym: "cisterna chiasmatica" EXACT [BIRNLEX:4003] synonym: "cisterna chiasmatica" RELATED OMO:0003011 [Wikipedia:Chiasmatic_cistern] synonym: "cisterna chiasmatis" EXACT [BIRNLEX:4003] xref: BAMS:ccis xref: BIRNLEX:4003 xref: EMAPA:19057 xref: FMA:74515 xref: NCIT:C32304 xref: neuronames:30 {source="BIRNLEX:4003"} xref: SCTID:47947006 xref: UMLS:C0228152 {source="ncithesaurus:Chiasmatic_Cistern", source="BIRNLEX:4003"} xref: Wikipedia:Chiasmatic_cistern is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0002899 name: hippocampal sulcus namespace: uberon def: "The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]." [Wikipedia:Hippocampal_sulcus] subset: uberon_slim synonym: "dentate fissure" EXACT [FMA:83747] synonym: "hippocampal fissure" EXACT [FMA:83747] synonym: "hippocampal fissure (Gratiolet)" RELATED [NeuroNames:42] synonym: "HIS" BROAD OMO:0003000 [BIRNLEX:4004, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus hippocampalis" RELATED OMO:0003011 [Wikipedia:Hippocampal_sulcus] synonym: "sulcus hippocampi" EXACT [BIRNLEX:4004] synonym: "sulcus hippocampi" RELATED OMO:0003011 [Wikipedia:Hippocampal_sulcus] xref: BAMS:hf xref: BAMS:his xref: BIRNLEX:4004 xref: DHBA:10619 xref: EMAPA:36471 xref: FMA:83747 xref: HBA:9394 xref: MBA:1063 xref: NCIT:C32743 xref: neuronames:42 {source="BIRNLEX:4004"} xref: SCTID:369101000 xref: UMLS:C0228251 {source="ncithesaurus:Hippocampal_Fissure", source="BIRNLEX:4004"} xref: Wikipedia:Hippocampal_sulcus is_a: UBERON:0008334 ! subarachnoid sulcus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif" xsd:anyURI property_value: UBPROP:0000012 "two classes in ncit (in general ncit distinguishes between fissure and sulcus, whereas FMA treats these as exact synonyms)" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0002900 name: transverse occipital sulcus namespace: uberon def: "The transverse occipital sulcus is a structure in the occipital lobe. The transverse occipital sulcus is continuous with the posterior end of the occipital ramus of the intraparietal sulcus, and runs across the upper part of the lobe, a short distance behind the parietoC6ccipital fissure." [Wikipedia:Transverse_occipital_sulcus] synonym: "sulcus occipitalis transversus" EXACT [BIRNLEX:4013] synonym: "TOCS" BROAD OMO:0003000 [BIRNLEX:4013, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tocs xref: BIRNLEX:4013 xref: BTO:0003786 xref: DHBA:13228 xref: FMA:83786 xref: HBA:9388 xref: neuronames:145 {source="BIRNLEX:4013"} xref: UMLS:C0262348 {source="BIRNLEX:4013"} xref: Wikipedia:Transverse_occipital_sulcus is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0002901 name: posterior calcarine sulcus namespace: uberon synonym: "PCCS" BROAD OMO:0003000 [BIRNLEX:4015, NIFSTD:NeuroNames_abbrevSource] synonym: "postcalcarine sulcus" EXACT [FMA:83787] synonym: "posterior calcarine fissure" EXACT [FMA:83787] synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787] synonym: "sulcus calcarinus posterior" EXACT [BIRNLEX:4015] xref: BAMS:pccs xref: BIRNLEX:4015 xref: DHBA:10285 xref: FMA:83787 xref: neuronames:149 {source="BIRNLEX:4015"} xref: UMLS:C0262311 {source="BIRNLEX:4015"} is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0002902 name: occipital pole namespace: uberon def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Occipital_pole] subset: human_reference_atlas subset: uberon_slim synonym: "OCP" BROAD OMO:0003000 [BIRNLEX:4016, NIFSTD:NeuroNames_abbrevSource] synonym: "polus occipitalis" EXACT OMO:0003011 [BIRNLEX:4016] synonym: "polus occipitalis cerebri" RELATED [BTO:0001868] xref: BAMS:OCP xref: BAMS:OcP xref: BAMS:ocp xref: BIRNLEX:4016 xref: BTO:0001868 xref: DHBA:12149 xref: FMA:74892 xref: HBA:4181 xref: neuronames:141 {source="BIRNLEX:4016"} xref: SCTID:314160003 xref: UMLS:C0228217 {source="BIRNLEX:4016"} xref: Wikipedia:Occipital_pole is_a: UBERON:0009899 ! pole of cerebral hemisphere relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002903 name: lunate sulcus namespace: uberon def: "The lunate sulcus is a structure in the occipital lobe. It is not present in all individuals." [Wikipedia:Lunate_sulcus] synonym: "lunate fissure" EXACT [FMA:83788] synonym: "LUS" BROAD OMO:0003000 [BIRNLEX:4017, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus lunatus" EXACT [BIRNLEX:4017] synonym: "sulcus simialis" EXACT [BIRNLEX:4017] xref: BAMS:lus xref: BIRNLEX:4017 xref: BM:Tel-Cx-LUS xref: DHBA:146034812 xref: FMA:83788 xref: HBA:9390 xref: NCIT:C33019 xref: neuronames:150 {source="BIRNLEX:4017"} xref: UMLS:C0262278 {source="ncithesaurus:Lunate_Sulcus", source="BIRNLEX:4017"} xref: Wikipedia:Lunate_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0002904 name: lateral occipital sulcus namespace: uberon def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [Wikipedia:Lateral_occipital_sulcus] subset: uberon_slim synonym: "lateral occipital sulcus (H)" RELATED [NeuroNames:143] synonym: "LOCS" BROAD OMO:0003000 [BIRNLEX:4018, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus occipitalis lateralis" EXACT [BIRNLEX:4018] xref: BAMS:locs xref: BIRNLEX:4018 xref: FMA:83785 xref: HBA:9389 xref: NCIT:C32952 xref: neuronames:143 {source="BIRNLEX:4018"} xref: SCTID:369219003 xref: UMLS:C0228229 {source="BIRNLEX:4018", source="ncithesaurus:Lateral-occipital_Sulcus"} xref: UMLS:C1289641 {source="BIRNLEX:4018"} xref: Wikipedia:Lateral_occipital_sulcus is_a: UBERON:0013118 ! sulcus of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2c/Gray727_lateral-occipital_sulcus.svg" xsd:anyURI [Term] id: UBERON:0002905 name: intralingual sulcus namespace: uberon def: "A groove located within the boundaries of the lingual gyrus in the human. Identified by dissection, it is oriented parallel to the inferior margin of the occipital lobe ( Ono-1990; Duvernoy-1992 )." [neuronames:151] synonym: "ILS" BROAD OMO:0003000 [BIRNLEX:4019, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus intralingualis" EXACT [BIRNLEX:4019] xref: BAMS:ils xref: BIRNLEX:4019 xref: FMA:83789 xref: HBA:9397 xref: neuronames:151 {source="BIRNLEX:4019"} xref: UMLS:C0694595 {source="BIRNLEX:4019"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002943 {source="cjm"} ! lingual gyrus property_value: UBPROP:0000008 "It is not found in the macaque or in the smooth cerebral cortex of the rat or mouse ( NeuroNames )" xsd:string [Term] id: UBERON:0002906 name: anterior occipital sulcus namespace: uberon synonym: "AOCS" BROAD OMO:0003000 [BIRNLEX:4023, NIFSTD:NeuroNames_abbrevSource] synonym: "ascending limb of the inferior temporal sulcus" EXACT [BIRNLEX:4023] synonym: "posterior inferior temporal sulcus" EXACT [BIRNLEX:4023] synonym: "sulci occipitales superiores" EXACT [BIRNLEX:4023] synonym: "sulcus annectans" EXACT [BIRNLEX:4023] synonym: "sulcus occipitalis anterior" EXACT [BIRNLEX:4023] xref: BAMS:aocs xref: BIRNLEX:4023 xref: DHBA:146034784 xref: FMA:75758 xref: HBA:9385 xref: neuronames:142 {source="BIRNLEX:4023"} xref: UMLS:C0262194 {source="BIRNLEX:4023"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0002907 name: superior postcentral sulcus namespace: uberon synonym: "postcentral dimple" EXACT [FMA:83775] synonym: "postcentral sulcus (Peele)" RELATED [NeuroNames:100] synonym: "SPCS" BROAD OMO:0003000 [BIRNLEX:4025, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus postcentralis superior" EXACT [BIRNLEX:4025] xref: BAMS:spcs xref: BIRNLEX:4025 xref: DHBA:10215 xref: FMA:83775 xref: neuronames:100 {source="BIRNLEX:4025"} xref: UMLS:C0262337 {source="BIRNLEX:4025"} is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002908 name: subparietal sulcus namespace: uberon synonym: "SBPS" BROAD OMO:0003000 [BIRNLEX:4026, NIFSTD:NeuroNames_abbrevSource] synonym: "splenial sulcus" EXACT [FMA:83777] synonym: "sulcus subparietalis" EXACT [BIRNLEX:4026] synonym: "suprasplenial sulcus" EXACT [FMA:83777] xref: BAMS:sbps xref: BIRNLEX:4026 xref: BM:Tel-Cx-SPS xref: FMA:83777 xref: HBA:9376 xref: neuronames:102 {source="BIRNLEX:4026"} xref: SCTID:279352008 xref: UMLS:C0228216 {source="BIRNLEX:4026"} xref: UMLS:C1281079 {source="BIRNLEX:4026"} is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002909 name: posterior subcentral sulcus namespace: uberon synonym: "PSCS" BROAD OMO:0003000 [BIRNLEX:4027, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus subcentralis posterior" EXACT [BIRNLEX:4027] xref: BAMS:pscs xref: BIRNLEX:4027 xref: FMA:83778 xref: neuronames:103 {source="BIRNLEX:4027"} xref: UMLS:C0262318 {source="BIRNLEX:4027"} is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002910 name: posterior ascending limb of lateral sulcus namespace: uberon def: "One of two branches of the lateral fissure at its posterior terminus identified by dissection in the human. The other is the terminal descending limb of the lateral fissure ( Ono-1990 ). It is not found in the macaque ( Martin-2000 ), the rat ( Swanson-2004 ) or the mouse ( Hof-2000 )." [NeuroNames:104] synonym: "ascending terminal ramus of sylvian fissure" EXACT [] synonym: "PALS" BROAD OMO:0003000 [BIRNLEX:4028, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761] synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761] synonym: "ramus posterior ascendens fissurae lateralis" EXACT [BIRNLEX:4028] synonym: "ramus posterior sulci lateralis cerebri" EXACT OMO:0003011 [FMA:83761, FMA:TA] synonym: "sulcus lateralis, ramus posterior" RELATED OMO:0003011 [NeuroNames:104] synonym: "terminal ascending limb of sylvian fissure" RELATED [NeuroNames:104] synonym: "terminal ascending limb of the lateral fissure" RELATED [NeuroNames:104] xref: BAMS:pals xref: BIRNLEX:4028 xref: FMA:83761 xref: neuronames:104 {source="BIRNLEX:4028"} xref: UMLS:C0262310 {source="BIRNLEX:4028"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus [Term] id: UBERON:0002911 name: parietal operculum namespace: uberon def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [Wikipedia:Parietal_operculum] subset: human_reference_atlas subset: uberon_slim synonym: "operculum parietale" EXACT OMO:0003011 [BIRNLEX:4029] synonym: "PAO" BROAD OMO:0003000 [BIRNLEX:4029, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:pao xref: BAMS:PaOp xref: BIRNLEX:4029 xref: DHBA:13230 xref: FMA:74889 xref: neuronames:96 {source="BIRNLEX:4029"} xref: SCTID:362353000 xref: UMLS:C0228265 {source="BIRNLEX:4029"} xref: UMLS:C1284612 {source="BIRNLEX:4029"} xref: Wikipedia:Parietal_operculum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002912 name: marginal sulcus namespace: uberon def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]." [Wikipedia:Marginal_sulcus] subset: uberon_slim synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773] synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773] synonym: "MS" BROAD OMO:0003000 [BIRNLEX:4030, NIFSTD:NeuroNames_abbrevSource] synonym: "pars marginalis sulci cinguli" RELATED OMO:0003011 [NeuroNames:98] synonym: "ramus marginalis sulci cingulati" EXACT [BIRNLEX:4030] synonym: "ramus marginalis sulci cinguli" EXACT OMO:0003011 [FMA:83773, FMA:TA] synonym: "ramus marginalis; sulcus marginalis" RELATED OMO:0003011 [Wikipedia:Marginal_sulcus] synonym: "sulcus marginalis" EXACT OMO:0003011 [FMA:83773, FMA:TA] xref: BIRNLEX:4030 xref: FMA:83773 xref: neuronames:98 {source="BIRNLEX:4030"} xref: SCTID:279351001 xref: UMLS:C0259792 {source="BIRNLEX:4030"} xref: Wikipedia:Marginal_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0002710 {source="FMA"} ! cingulate sulcus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray727_marginal_sulcus.svg" xsd:anyURI [Term] id: UBERON:0002913 name: intraparietal sulcus namespace: uberon def: "The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]." [Wikipedia:Intraparietal_sulcus] subset: uberon_slim synonym: "interparietal fissure" EXACT [FMA:83772] synonym: "intraparietal fissure" EXACT [FMA:83772] synonym: "intraparietal sulcus of Turner" RELATED [BTO:0003787] synonym: "ITPS" BROAD OMO:0003000 [BIRNLEX:4031, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus interparietalis" EXACT [BIRNLEX:4031] synonym: "sulcus intraparietalis" RELATED OMO:0003011 [BTO:0003787, Wikipedia:Intraparietal_sulcus] synonym: "Turner sulcus" RELATED [BTO:0003787] xref: BAMS:ips xref: BAMS:itps xref: BIRNLEX:4031 xref: BM:Tel-Cx-IPS xref: BTO:0003787 xref: DHBA:10620 xref: FMA:83772 xref: HBA:9372 xref: NCIT:C32879 xref: neuronames:97 {source="BIRNLEX:4031"} xref: SCTID:279338006 xref: UMLS:C0228213 {source="BIRNLEX:4031", source="ncithesaurus:Intraparietal_Sulcus"} xref: UMLS:C1281069 {source="BIRNLEX:4031"} xref: Wikipedia:Intraparietal_sulcus is_a: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray726_intraparietal_sulcus.svg" xsd:anyURI [Term] id: UBERON:0002914 name: inferior postcentral sulcus namespace: uberon synonym: "IPCS" BROAD OMO:0003000 [BIRNLEX:4032, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus postcentralis inferior" EXACT [BIRNLEX:4032] xref: BAMS:ipcs xref: BAMS:poci xref: BIRNLEX:4032 xref: FMA:83776 xref: neuronames:101 {source="BIRNLEX:4032"} xref: UMLS:C0262256 {source="BIRNLEX:4032"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus [Term] id: UBERON:0002915 name: postcentral sulcus of parietal lobe namespace: uberon def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [Wikipedia:Postcentral_sulcus] subset: uberon_slim synonym: "POCS" BROAD OMO:0003000 [BIRNLEX:4033, NIFSTD:NeuroNames_abbrevSource] synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774] synonym: "postcentral fissure-1" EXACT [FMA:83774] synonym: "postcentral sulcus" EXACT [FMA:83774] synonym: "structure of postcentral sulcus" EXACT [BIRNLEX:4033] synonym: "sulcus postcentralis" EXACT [BIRNLEX:4033] synonym: "sulcus postcentralis" RELATED OMO:0003011 [Wikipedia:Postcentral_sulcus] xref: BAMS:pocs xref: BIRNLEX:4033 xref: BM:Tel-Cx-PoCS xref: DHBA:10627 xref: FMA:83774 xref: HBA:9371 xref: NCIT:C33347 xref: neuronames:99 {source="BIRNLEX:4033"} xref: SCTID:279339003 xref: UMLS:C0228212 {source="ncithesaurus:Postcentral_Sulcus", source="BIRNLEX:4033"} xref: UMLS:C1281070 {source="BIRNLEX:4033"} xref: Wikipedia:Postcentral_sulcus is_a: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001872 {source="cjm"} ! parietal lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/6/6c/Postcentral_sulcus.png" xsd:anyURI [Term] id: UBERON:0002916 name: central sulcus namespace: uberon def: "The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]." [Wikipedia:Central_sulcus] subset: uberon_slim synonym: "central cerebral sulcus" EXACT [FMA:83752] synonym: "central fissure" EXACT [FMA:83752] synonym: "central sulcus of Rolando" EXACT [] synonym: "CS" BROAD OMO:0003000 [BIRNLEX:4035, NIFSTD:NeuroNames_abbrevSource] synonym: "fissure of Rolando" EXACT [] synonym: "rolandic fissure" EXACT [BIRNLEX:4035] synonym: "sulcus centralis" EXACT [BIRNLEX:4035] synonym: "sulcus centralis (rolandi)" EXACT [BIRNLEX:4035] synonym: "sulcus centralis cerebri" EXACT OMO:0003011 [BIRNLEX:4035, Wikipedia:Central_sulcus] synonym: "sulcus of Rolando" EXACT [] xref: BAMS:cs xref: BIRNLEX:4035 xref: BM:Tel-Cx-CS xref: DHBA:10614 xref: FMA:83752 xref: HBA:9403 xref: NCIT:C32280 xref: neuronames:48 {source="BIRNLEX:4035"} xref: SCTID:279340001 xref: UMLS:C0228188 {source="ncithesaurus:Central_Sulcus_of_Rolando", source="BIRNLEX:4035"} xref: UMLS:C1281071 {source="BIRNLEX:4035"} xref: Wikipedia:Central_sulcus is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray726_central_sulcus.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/b/b6/Central_sulcus.png" xsd:anyURI [Term] id: UBERON:0002918 name: medial parabrachial nucleus namespace: uberon def: "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Medial_parabrachial_nucleus] subset: uberon_slim synonym: "nucleus parabrachialis medialis" RELATED OMO:0003011 [Wikipedia:Medial_parabrachial_nucleus] synonym: "parabrachial nucleus, medial division" RELATED [NeuroNames:587] synonym: "parabrachial nucleus, medial part" RELATED [NeuroNames:587] xref: BAMS:MPB xref: BIRNLEX:4038 xref: DHBA:12487 xref: DMBA:16850 xref: FMA:72480 xref: HBA:9153 xref: MBA:890 xref: neuronames:587 {source="BIRNLEX:4038"} xref: UMLS:C0175446 {source="BIRNLEX:4038"} xref: Wikipedia:Medial_parabrachial_nucleus is_a: UBERON:0007634 ! parabrachial nucleus relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002919 name: anterior parolfactory sulcus namespace: uberon synonym: "APS" BROAD OMO:0003000 [BIRNLEX:4039, NIFSTD:NeuroNames_abbrevSource] synonym: "paraolfactory sulci" EXACT OMO:0003004 [BIRNLEX:4039] synonym: "paraolfactory sulcus" EXACT [FMA:83744] synonym: "sulcus parolfactorius anterior" EXACT [BIRNLEX:4039] xref: BAMS:aps xref: BIRNLEX:4039 xref: DHBA:146034824 xref: FMA:83744 xref: neuronames:37 {source="BIRNLEX:4039"} xref: UMLS:C0262196 {source="BIRNLEX:4039"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus [Term] id: UBERON:0002920 name: callosal sulcus namespace: uberon def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [Wikipedia:Callosal_sulcus] subset: uberon_slim synonym: "CAS" BROAD OMO:0003000 [BIRNLEX:4040, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus corporis callosi" EXACT [BIRNLEX:4040] synonym: "sulcus corporis callosi" RELATED OMO:0003011 [Wikipedia:Callosal_sulcus] synonym: "sulcus of corpus callosum" EXACT [FMA:83743] xref: BAMS:cas xref: BIRNLEX:4040 xref: DHBA:10613 xref: FMA:83743 xref: HBA:9404 xref: neuronames:36 {source="BIRNLEX:4040"} xref: SCTID:279349000 xref: UMLS:C0262204 {source="BIRNLEX:4040"} xref: Wikipedia:Callosal_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray727_sulcus_of_the_corpus_callosum.svg" xsd:anyURI [Term] id: UBERON:0002921 name: longitudinal fissure namespace: uberon def: "The deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fissure] subset: pheno_slim subset: uberon_slim synonym: "fissura interhemispherica" EXACT [BIRNLEX:4041] synonym: "fissura longitudinalis cerebrales" EXACT [BIRNLEX:4041] synonym: "fissura longitudinalis cerebri" EXACT [BIRNLEX:4041] synonym: "fissura longitudinalis magna" EXACT [BIRNLEX:4041] synonym: "hemispheric sulcus" EXACT [FMA:83727] synonym: "interhemispheric fissure" EXACT [FMA:83727] synonym: "LF" BROAD OMO:0003000 [BIRNLEX:4041, NIFSTD:NeuroNames_abbrevSource] synonym: "longitudinal cerebral fissure" EXACT [FMA:83727] synonym: "longitudinal fissure of hemisphere" EXACT [BIRNLEX:4041] synonym: "longitudinal fissure of the cerebrum" EXACT [BIRNLEX:4041] synonym: "longitudinal sulcus" EXACT [FMA:83727] synonym: "medial longitudinal fissure" EXACT [FMA:83727] synonym: "sagittal fissure" EXACT [FMA:83727] xref: BAMS:lf xref: BAMS:lfh xref: BIRNLEX:4041 xref: DHBA:10622 xref: FMA:83727 xref: HBA:9401 xref: NCIT:C33005 xref: neuronames:35 {source="BIRNLEX:4041"} xref: SCTID:369225004 xref: UMLS:C0228186 {source="BIRNLEX:4041", source="ncithesaurus:Longitudinal_Fissure"} xref: Wikipedia:Medial_longitudinal_fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png" xsd:anyURI [Term] id: UBERON:0002922 name: olfactory trigone namespace: uberon def: "A small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract (adapted from Wikipedia)." [BIRNLEX:4042] subset: uberon_slim synonym: "OLT" BROAD OMO:0003000 [BIRNLEX:4042, NIFSTD:NeuroNames_abbrevSource] synonym: "trigonum olfactorium" EXACT [BIRNLEX:4042] synonym: "trigonum olfactorium" RELATED OMO:0003011 [Wikipedia:Olfactory_trigone] xref: BAMS:olt xref: BAMS:OTr xref: BIRNLEX:4042 xref: FMA:74883 xref: NCIT:C33813 xref: neuronames:34 {source="BIRNLEX:4042"} xref: SCTID:369102007 xref: UMLS:C0228279 {source="BIRNLEX:4042", source="ncithesaurus:Trigonum_Olfactorium"} xref: Wikipedia:Olfactory_trigone is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0005366 {source="BTO-def"} ! olfactory lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI [Term] id: UBERON:0002923 name: posterior parolfactory sulcus namespace: uberon synonym: "PPOS" BROAD OMO:0003000 [BIRNLEX:4043, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus parolfactorius posterior" RELATED OMO:0003011 [NeuroNames:38] xref: BAMS:ppos xref: BAMS:pps xref: BIRNLEX:4043 xref: DHBA:146034828 xref: FMA:83745 xref: HBA:9369 xref: neuronames:38 {source="BIRNLEX:4043"} xref: UMLS:C0262316 {source="BIRNLEX:4043"} is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus [Term] id: UBERON:0002924 name: terminal nerve namespace: uberon def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest." [PMID:15821344, Wikipedia:Terminal_nerve, ZFIN:ZDB-PUB-041202-1] comment: http://www.ncbi.nlm.nih.gov/pubmed/2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.' subset: efo_slim subset: uberon_slim synonym: "cranial nerve 0" EXACT [Wikipedia:Terminal_nerve] synonym: "cranial nerve zero" EXACT [Wikipedia:Terminal_nerve] synonym: "nervus terminalis" EXACT [ZFA:0001356] synonym: "terminalis" BROAD [ISBN:0471888893] synonym: "terminalis nerve" EXACT [ISBN:0471888893] synonym: "TRN" BROAD OMO:0003000 [BIRNLEX:4044, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tn xref: BAMS:trn xref: BIRNLEX:4044 xref: EFO:0003678 xref: MBA:885 xref: neuronames:33 {source="BIRNLEX:4044"} xref: TAO:0001356 xref: UMLS:C0262346 {source="BIRNLEX:4044"} xref: UMLS:C1185749 {source="BIRNLEX:4044"} xref: Wikipedia:Terminal_nerve xref: ZFA:0001356 is_a: UBERON:0001785 {source="ZFA"} ! cranial nerve property_value: UBPROP:0000001 "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. Whitlock 2004. Also see Grens, Greenwood and Fernald, Brain Behav Evol 2005; 66(1):1-9.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001356", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0002925 name: trigeminal nucleus namespace: uberon def: "A nucleus of brain that is part of a trigeminal nuclear complex." [OBOL:automatic] subset: uberon_slim synonym: "nucleus mesencephalicus nervi trigemini" RELATED [BTO:0001074] synonym: "nucleus mesencephalicus trigeminalis" RELATED [BTO:0001074] synonym: "nucleus of trigeminal nuclear complex" EXACT [FMA:71247] synonym: "nucleus tractus mesencephali nervi trigeminalis" RELATED [BTO:0001074] synonym: "trigeminal nuclear complex nucleus" EXACT [FMA:71247] synonym: "trigeminal nucleus" EXACT [FMA:71248] synonym: "trigeminal V nucleus" EXACT [MA:0001028] xref: BM:V xref: BTO:0001074 xref: CALOHA:TS-2077 xref: EMAPA:35883 xref: EV:0100271 xref: FMA:71247 xref: GAID:604 xref: http://uri.neuinfo.org/nif/nifstd/nifext_11 xref: MA:0001028 xref: MESH:D014278 xref: NCIT:C12807 xref: SCTID:280164007 xref: UMLS:C0040999 {source="ncithesaurus:Trigeminal_Nucleus"} xref: VHOG:0001353 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain relationship: part_of UBERON:0007641 ! trigeminal nuclear complex property_value: UBPROP:0000012 "massive inconsistencies between GO, MA, wikipedia. Part of pons in MA, but this leads to inconsistencies with ABA." xsd:string {external_ontology="GO", url="https://github.com/obophenotype/mouse-anatomy-ontology/issues/58"} [Term] id: UBERON:0002926 name: gustatory epithelium namespace: uberon def: "A sensory epithelium that is part of a gustatory system." [OBOL:automatic] xref: FMA:62412 xref: http://uri.neuinfo.org/nif/nifstd/nifext_12 is_a: UBERON:0006934 ! sensory epithelium relationship: part_of UBERON:0000012 {source="NIFSTD"} ! somatic nervous system [Term] id: UBERON:0002928 name: dentate gyrus polymorphic layer namespace: uberon def: "A cellular layer of the dentate gyrus enclosed by the granule cell layer. A number of cell types are located in the polymorphic layer but the most prominent is the mossy cell." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885] synonym: "CA4" RELATED OMO:0003002 [PMID:17765709] synonym: "polymorph layer of the dentate gyrus" RELATED [BAMS:PoDG] xref: BAMS:po xref: BAMS:PoDG xref: BIRNLEX:4128 xref: EMAPA:35280 xref: MA:0002864 xref: MBA:10704 xref: neuronames:2123 xref: NLX:42439 is_a: UBERON:0002304 ! layer of dentate gyrus property_value: IAO:0000116 "TODO: add mossy cell" xsd:string [Term] id: UBERON:0002929 name: dentate gyrus pyramidal layer namespace: uberon xref: EMAPA:37515 {source="MA:th"} xref: MA:0000948 is_a: UBERON:0002304 ! layer of dentate gyrus property_value: IAO:0000116 "existence of this layer is dubious, added for consistency with MA" xsd:string [Term] id: UBERON:0002930 name: tectopontine tract namespace: uberon synonym: "fibrae tectopontinae" EXACT OMO:0003011 [FMA:72505, FMA:TA] synonym: "tectopontine fibers" EXACT [FMA:72505] synonym: "tectopontine fibres" EXACT [FMA:72505] synonym: "tractus tectopontinus" RELATED OMO:0003011 [NeuroNames:612] xref: BIRNLEX:701 xref: DHBA:12364 xref: FMA:72505 xref: neuronames:612 {source="BIRNLEX:701"} xref: SCTID:3301002 xref: UMLS:C0228403 {source="BIRNLEX:701"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002931 name: dorsal septal nucleus namespace: uberon synonym: "nucleus dorsalis septi" RELATED OMO:0003011 [NeuroNames:260] synonym: "nucleus septalis dorsalis" RELATED OMO:0003011 [NeuroNames:260] xref: BAMS:DS xref: BIRNLEX:704 xref: FMA:61877 xref: neuronames:260 {source="BIRNLEX:704"} xref: UMLS:C0262226 {source="BIRNLEX:704"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex [Term] id: UBERON:0002932 name: trapezoid body namespace: uberon def: "Bundles of axons traversing the pontine tegmentum oriented in the mediolateral direction. These fibers are related to the auditory pathway. Nuclei are embedded within these fibers." [BIRNLEX:707] subset: uberon_slim synonym: "corpus trapezoides" RELATED OMO:0003011 [NeuroNames:594] synonym: "corpus trapezoideum" RELATED OMO:0003011 [Wikipedia:Trapezoid_body] synonym: "trapezoid body (Treviranus)" RELATED [NeuroNames:594] synonym: "TZ" BROAD OMO:0003000 [BIRNLEX:707, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:TB xref: BAMS:tb xref: BAMS:tz xref: BIRNLEX:707 xref: BM:TB xref: DHBA:12796 xref: FMA:72487 xref: HBA:9197 xref: MBA:841 xref: MESH:D065833 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:594 {source="BIRNLEX:707"} xref: SCTID:369019006 xref: UMLS:C0152379 {source="BIRNLEX:707"} xref: Wikipedia:Trapezoid_body is_a: UBERON:0019293 ! white matter of pontine tegmentum relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png" xsd:anyURI [Term] id: UBERON:0002933 name: nucleus of anterior commissure namespace: uberon synonym: "anterior commissural nucleus" RELATED [BAMS:AC] synonym: "anterior commissure nucleus" EXACT [FMA:61883] synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883] synonym: "bed nucleus of the anterior commissure" RELATED [NeuroNames:266] synonym: "nucleus commissurae anterior" RELATED OMO:0003011 [NeuroNames:266] synonym: "nucleus commissurae anterioris" RELATED OMO:0003011 [NeuroNames:266] synonym: "nucleus interstitialis commissurae anterior" RELATED OMO:0003011 [NeuroNames:266] synonym: "nucleus of commissura anterior" EXACT [FMA:61883] synonym: "nucleus of the anterior commissure" RELATED [NeuroNames:266] xref: BAMS:AC xref: BAMS:ACN xref: BAMS:AGN xref: BAMS:BAC xref: BIRNLEX:712 xref: BM:Tel-ACN xref: DMBA:15794 xref: FMA:61883 xref: HBA:4312 xref: MBA:287 xref: neuronames:266 {source="BIRNLEX:712"} xref: UMLS:C0262292 {source="BIRNLEX:712"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 ! septal nuclear complex [Term] id: UBERON:0002934 name: ventral oculomotor nucleus namespace: uberon synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED OMO:0003011 [NeuroNames:496] synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED OMO:0003011 [NeuroNames:496] synonym: "V3" BROAD OMO:0003000 [BIRNLEX:713, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventral oculomotor cell column" EXACT [FMA:72422] xref: BIRNLEX:713 xref: DHBA:12205 xref: FMA:72422 xref: HBA:9038 xref: neuronames:496 {source="BIRNLEX:713"} xref: UMLS:C0175380 {source="BIRNLEX:713"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex [Term] id: UBERON:0002935 name: magnocellular part of ventral anterior nucleus namespace: uberon synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192] synonym: "magnocellular part of the ventral anterior nucleus" RELATED [NeuroNames:336] synonym: "magnocellular ventral anterior nucleus" EXACT [BIRNLEX:716] synonym: "nucleus lateropolaris (magnocellularis)" EXACT [BIRNLEX:716] synonym: "nucleus lateropolaris magnocellularis (hassler)" EXACT [BIRNLEX:716] synonym: "nucleus rostralis lateralis situs perifascicularis" EXACT [BIRNLEX:716] synonym: "nucleus thalamicus ventral anterior, pars magnocellularis" EXACT [BIRNLEX:716] synonym: "nucleus thalamicus ventralis anterior, pars magnocellularis" RELATED OMO:0003011 [NeuroNames:336] synonym: "nucleus ventralis anterior, pars magnocellularis" EXACT [BIRNLEX:716] synonym: "pars magnocellularis nuclei ventralis anterior thalami" EXACT OMO:0003011 [FMA:62192, FMA:TA] synonym: "VAMC" BROAD OMO:0003000 [BIRNLEX:716, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192] synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventroanterior thalamic nucleus, magnocellular part" EXACT [BIRNLEX:716] xref: BAMS:VAMC xref: BIRNLEX:716 xref: BM:Die-Th-VA-VAmc xref: DHBA:10419 xref: FMA:62192 xref: HBA:4420 xref: neuronames:336 {source="BIRNLEX:716"} xref: UMLS:C0228335 {source="BIRNLEX:716"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus of thalamus [Term] id: UBERON:0002936 name: magnocellular part of red nucleus namespace: uberon def: "The magnocellular red nucleus (RNm) is located in the rostral midbrain and is involved in motor coordination. Together with the parvocellular red nucleus, it makes up the red nucleus." [Wikipedia:Magnocellular_red_nucleus] synonym: "magnocellular part of the red nucleus" RELATED [NeuroNames:507] synonym: "nucleus ruber magnocellularis" RELATED OMO:0003011 [NeuroNames:507] synonym: "nucleus ruber, pars magnocellularis" RELATED OMO:0003011 [NeuroNames:507] synonym: "palaeorubrum" RELATED OMO:0003011 [NeuroNames:507] synonym: "paleoruber" EXACT [FMA:72431] synonym: "pars magnocellularis (ruber)" RELATED OMO:0003011 [NeuroNames:507] synonym: "pars magnocellularis nuclei rubri" EXACT OMO:0003011 [FMA:72431, FMA:TA] synonym: "red nucleus magnocellular part" RELATED [BAMS:RMC, BAMS:RNmc] synonym: "red nucleus, magnocellular part" EXACT [FMA:72431] synonym: "RMC" BROAD OMO:0003000 [BIRNLEX:720, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:RMC xref: BAMS:RNmc xref: BIRNLEX:720 xref: DHBA:12249 xref: DMBA:16737 xref: FMA:72431 xref: HBA:9055 xref: neuronames:507 {source="BIRNLEX:720"} xref: UMLS:C0175402 {source="BIRNLEX:720"} xref: Wikipedia:Magnocellular_red_nucleus is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002937 name: parvocellular part of ventral anterior nucleus namespace: uberon synonym: "nucleus ventralis anterior (dewulf)" EXACT [BIRNLEX:722] synonym: "nucleus ventralis anterior, pars parvicellularis" EXACT [BIRNLEX:722] synonym: "nucleus ventralis anterior, pars parvocellularis" RELATED OMO:0003011 [NeuroNames:335] synonym: "parvicellular part of the ventral anterior nucleus" RELATED [NeuroNames:335] synonym: "parvicellular part of ventral anterior nucleus" EXACT [] synonym: "VAPC" BROAD OMO:0003000 [BIRNLEX:722, NIFSTD:NeuroNames_abbrevSource] synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191] synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191] synonym: "ventralis anterior (jones)" EXACT [] xref: BAMS:VAPC xref: BIRNLEX:722 xref: FMA:62191 xref: neuronames:335 {source="BIRNLEX:722"} xref: UMLS:C0228334 {source="BIRNLEX:722"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus of thalamus [Term] id: UBERON:0002938 name: parvocellular part of red nucleus namespace: uberon def: "The parvocellular red nucleus (RNp) is located in the rostral midbrain and is involved in motor coordination. Together with the magnocellular red nucleus, it makes up the red nucleus." [Wikipedia:Parvocellular_red_nucleus] synonym: "neoruber" EXACT [FMA:72430] synonym: "neorubrum" RELATED OMO:0003011 [NeuroNames:506] synonym: "nucleus ruber parvocellularis" RELATED OMO:0003011 [NeuroNames:506] synonym: "nucleus ruber, pars parvocellularis" RELATED OMO:0003011 [NeuroNames:506] synonym: "pars parvocellularis (ruber)" RELATED OMO:0003011 [NeuroNames:506] synonym: "pars parvocellularis nuclei rubri" EXACT OMO:0003011 [FMA:72430, FMA:TA] synonym: "parvocellular part of the red nucleus" RELATED [NeuroNames:506] synonym: "red nucleus parvicellular part" RELATED [BAMS:RNpc] synonym: "red nucleus, parvicellular part" RELATED [NeuroNames:506] synonym: "red nucleus, parvocellular part" EXACT [FMA:72430] synonym: "RPC" BROAD OMO:0003000 [BIRNLEX:725, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:RNpc xref: BAMS:RPC xref: BIRNLEX:725 xref: DHBA:12250 xref: DMBA:16633 xref: FMA:72430 xref: HBA:9056 xref: neuronames:506 {source="BIRNLEX:725"} xref: UMLS:C0175401 {source="BIRNLEX:725"} xref: Wikipedia:Parvocellular_red_nucleus is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002939 name: ventral posteroinferior nucleus namespace: uberon synonym: "nuclei ventrales posteriores thalami" RELATED [BTO:0002464] synonym: "nuclei ventrobasales thalami" RELATED [BTO:0002464] synonym: "nucleus ventralis posterior inferior thalami" EXACT OMO:0003011 [FMA:62199, FMA:TA] synonym: "ventral posterior" RELATED [BAMS:VP] synonym: "ventral posterior complex of the thalamus" RELATED [BAMS:VP] synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199] synonym: "ventral posterior inferior nucleus of dorsal thalamus" RELATED [BAMS:VPI] synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199] synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199] synonym: "ventral posterior nuclei of thalamus" RELATED [BTO:0002464] synonym: "ventral posterior nucleus of thalamus" RELATED [BTO:0002464] synonym: "ventral posterolateral thalamic nucleus, inferior part" RELATED [BAMS:VPI] synonym: "ventroposterior inferior nucleus" RELATED [BTO:0004374] synonym: "ventroposterior inferior thalamic" RELATED [BAMS:VPI] synonym: "ventroposterior nucleus" RELATED [BTO:0004373] synonym: "ventroposterior nucleus of thalamus" RELATED [BAMS:VP] synonym: "VPN" RELATED OMO:0003000 [BTO:0004373] xref: BAMS:VP xref: BAMS:VPI xref: BIRNLEX:728 xref: BM:Die-Th-VPI xref: BTO:0002464 xref: BTO:0004373 xref: BTO:0004374 xref: DHBA:10426 xref: FMA:62199 xref: HBA:4426 xref: neuronames:350 xref: SCTID:369173003 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002596 {source="FMA"} ! ventral posterior nucleus of thalamus [Term] id: UBERON:0002940 name: anterior column of fornix namespace: uberon synonym: "anterior crus of fornix" EXACT [FMA:61966] synonym: "anterior pillar of fornix" EXACT [FMA:61966] synonym: "columna fornicis anterior" EXACT OMO:0003011 [FMA:61966, FMA:TA] synonym: "fornix, crus anterius" EXACT OMO:0003011 [FMA:61966, FMA:TA] xref: BAMS:afx xref: BIRNLEX:731 xref: FMA:61966 xref: HBA:9251 xref: neuronames:269 xref: UMLS:C0175236 {source="BIRNLEX:731"} is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0000052 {source="NIFSTD"} ! fornix of brain [Term] id: UBERON:0002941 name: capsule of red nucleus namespace: uberon synonym: "capsula nuclei rubris tegmenti" RELATED OMO:0003011 [NeuroNames:508] synonym: "capsule of the red nucleus" RELATED [NeuroNames:508] synonym: "CR" BROAD OMO:0003000 [BIRNLEX:732, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus ruber, capsula" RELATED OMO:0003011 [NeuroNames:508] synonym: "red nuclear capsule" EXACT [FMA:72450] xref: BAMS:cr xref: BIRNLEX:732 xref: FMA:72450 xref: neuronames:508 {source="BIRNLEX:732"} xref: SCTID:369245007 xref: UMLS:C0152369 {source="BIRNLEX:732"} is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0016554 ! white matter of midbrain relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002942 name: ventral posterolateral nucleus namespace: uberon def: "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]." [Wikipedia:Ventral_posterolateral_nucleus] subset: human_reference_atlas subset: uberon_slim synonym: "nucleus ventralis posterior lateralis thalami" EXACT [BIRNLEX:737] synonym: "nucleus ventralis posterolateralis" EXACT [BIRNLEX:737] synonym: "nucleus ventralis posterolateralis thalami" EXACT [BIRNLEX:737] synonym: "nucleus ventralis posterolateralis thalami" RELATED OMO:0003011 [Wikipedia:Ventral_posterolateral_nucleus] synonym: "nucleus ventralis thalami posterior lateralis" EXACT [BIRNLEX:737] synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200] synonym: "posterolateral ventral nucleus of the thalamus" EXACT [BIRNLEX:737] synonym: "ventral posterior lateral nucleus" RELATED [NeuroNames:344] synonym: "ventral posterior lateral nucleus of dorsal thalamus" RELATED [BAMS:VPL] synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200] synonym: "ventral posterolateral nucleus of the thalamus" EXACT [BIRNLEX:737] synonym: "ventral posterolateral nucleus of the thalamus principal part" RELATED [BAMS:VPL] synonym: "ventral posterolateral nucleus of the thalamus, general" RELATED [NeuroNames:344] synonym: "ventral posterolateral nucleus of the thalamus, principal part" RELATED [BAMS:VPL] synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200] synonym: "ventroposterior lateral thalamic nucleus" RELATED [BAMS:VPL] synonym: "ventroposterolateral nucleus of the thalamus" RELATED [NeuroNames:344] synonym: "VPL" BROAD OMO:0003000 [BIRNLEX:737, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VPL xref: BIRNLEX:737 xref: DHBA:10424 xref: DMBA:16430 xref: EMAPA:35910 xref: FMA:62200 xref: HBA:4425 xref: MA:0002894 xref: MBA:718 xref: NCIT:C33863 xref: neuronames:344 {source="BIRNLEX:737"} xref: SCTID:369171001 xref: UMLS:C0228337 {source="BIRNLEX:737"} xref: Wikipedia:Ventral_posterolateral_nucleus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002596 {source="FMA", source="NIF"} ! ventral posterior nucleus of thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002171 UBERON:0002945 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002943 name: lingual gyrus namespace: uberon def: "Component of the occipital lobe. The rostral boundary of the lingual gyrus was the posterior extent of the parahippocampal gyrus whereas the caudal boundary was the most posterior coronal slice where the gyrus could be visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the medial bank of the collateral sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:740] subset: human_reference_atlas subset: uberon_slim synonym: "gyrus lingualis" RELATED OMO:0003011 [Wikipedia:Lingual_gyrus] synonym: "gyrus occipitotemporalis medialis" EXACT OMO:0003011 [FMA:61904, FMA:TA] synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904] synonym: "medial occipito-temporal gyrus" RELATED [BAMS:MOTG] synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904] synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904] xref: BAMS:LgG xref: BAMS:LiG xref: BAMS:MOTG xref: BIRNLEX:740 xref: DHBA:12151 xref: FMA:61904 xref: HBA:4191 xref: neuronames:158 {source="BIRNLEX:740"} xref: SCTID:279203007 xref: UMLS:C0152308 {source="BIRNLEX:740"} xref: Wikipedia:Lingual_gyrus is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 {source="FMA"} ! occipital lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002944 name: spinothalamic tract of medulla namespace: uberon def: "Part of spinothalamic tract that is in the medulla." [BIRNLEX:741] subset: uberon_slim synonym: "spinothalamic tract" BROAD [BIRNLEX:741, FMA:72644] synonym: "spinothalamic tract of the medulla" RELATED [NeuroNames:810] synonym: "tractus spinothalamicus (myelencephali)" RELATED OMO:0003011 [NeuroNames:810] xref: BAMS:stm xref: BIRNLEX:741 xref: FMA:72644 xref: GAID:703 xref: MESH:D013133 xref: neuronames:810 {source="BIRNLEX:741"} xref: SCTID:360570003 xref: UMLS:C0037953 {source="BIRNLEX:741"} is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0007703 ! spinothalamic tract property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg" xsd:anyURI [Term] id: UBERON:0002945 name: ventral posteromedial nucleus of thalamus namespace: uberon def: "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_posteromedial_nucleus] subset: human_reference_atlas subset: uberon_slim synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202] synonym: "arcuate nucleus of the thalamus" EXACT [BIRNLEX:743] synonym: "arcuate nucleus-3" EXACT [FMA:62202] synonym: "nucleus arcuatus thalami" EXACT [BIRNLEX:743] synonym: "nucleus semilunaris thalami" EXACT [BIRNLEX:743] synonym: "nucleus ventralis posterior medialis thalami" EXACT [BIRNLEX:743] synonym: "nucleus ventralis posteromedialis" EXACT [BIRNLEX:743] synonym: "nucleus ventralis posteromedialis thalami" EXACT [BIRNLEX:743] synonym: "nucleus ventralis posteromedialis thalami" RELATED OMO:0003011 [Wikipedia:Ventral_posteromedial_nucleus] synonym: "nucleus ventrocaudalis anterior internus (hassler)" EXACT [BIRNLEX:743] synonym: "posteromedial ventral nucleus" EXACT [FMA:62202] synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202] synonym: "posteromedial ventral nucleus of the thalamus" EXACT [BIRNLEX:743] synonym: "semilunar nucleus" EXACT [FMA:62202] synonym: "thalamic gustatory nucleus" EXACT [FMA:62202] synonym: "ventral posterior medial nucleus" EXACT [FMA:62202] synonym: "ventral posterior medial nucleus of dorsal thalamus" RELATED [BAMS:VPM] synonym: "ventral posterior medial nucleus of thalamus" EXACT [BIRNLEX:743] synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202] synonym: "ventral posteromedial nucleus of the thalamus" EXACT [BIRNLEX:743] synonym: "ventral posteromedial nucleus of the thalamus principal part" RELATED [BAMS:VPM] synonym: "ventral posteromedial nucleus of the thalamus, general" RELATED [NeuroNames:347] synonym: "ventral posteromedial nucleus of the thalamus, principal part" RELATED [BAMS:VPM] synonym: "ventral posteromedial thalamic nucleus" EXACT [BIRNLEX:743] synonym: "ventroposterior medial thalamic nucleus" RELATED [BAMS:VPM] synonym: "ventroposteromedial nucleus of the thalamus" EXACT [BIRNLEX:743] synonym: "VPM" BROAD OMO:0003000 [BIRNLEX:743, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Gus xref: BAMS:SL xref: BAMS:VPM xref: BIRNLEX:743 xref: BM:Die-Th-VPM xref: DHBA:10425 xref: DMBA:16429 xref: EMAPA:35911 xref: FMA:62202 xref: HBA:4424 xref: MBA:733 xref: NCIT:C33864 xref: neuronames:347 {source="BIRNLEX:743"} xref: SCTID:369172008 xref: UMLS:C0752056 {source="BIRNLEX:743"} xref: Wikipedia:Ventral_posteromedial_nucleus is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002596 {source="FMA"} ! ventral posterior nucleus of thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png" xsd:anyURI property_value: RO:0002171 UBERON:0002942 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002947 name: frontal operculum namespace: uberon def: "Portion of frontal lobe that overlaps the insular cortex (adapted from Wikipedia)." [BIRNLEX:751] subset: human_reference_atlas synonym: "nucleus ventralis oralis, pars medialis (Dewulf)" RELATED OMO:0003011 [NeuroNames:2205] synonym: "operculum frontale" RELATED OMO:0003011 [Wikipedia:Operculum_(brain)] xref: BAMS:FOp xref: BAMS:fro xref: BIRNLEX:751 xref: DHBA:12127 xref: FMA:74886 xref: HBA:4078 xref: neuronames:2205 {source="BIRNLEX:751"} xref: SCTID:362352005 xref: UMLS:C0149547 {source="BIRNLEX:751"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002948 name: superior occipital gyrus namespace: uberon subset: human_reference_atlas synonym: "gyrus occipitalis primus" EXACT [FMA:61901] synonym: "gyrus occipitalis superior" RELATED OMO:0003011 [NeuroNames:154] xref: BAMS:O1 xref: BAMS:SOG xref: BIRNLEX:758 xref: DHBA:12154 xref: FMA:61901 xref: HBA:4212 xref: neuronames:154 {source="BIRNLEX:758"} xref: SCTID:279182006 xref: UMLS:C0228230 {source="BIRNLEX:758"} is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002949 name: tectospinal tract namespace: uberon def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract] subset: uberon_slim synonym: "Held's bundle" EXACT [FMA:72620] synonym: "tectospinal pathway" EXACT [FMA:72620] synonym: "tectospinal pathway" RELATED [NeuroNames:2769] synonym: "tectospinal tract" RELATED [NeuroNames:2769] synonym: "tectospinal tract of the medulla" RELATED [NeuroNames:786] synonym: "tractus tectospinalis" RELATED OMO:0003011 [NeuroNames:2769, Wikipedia:Tectospinal_tract] xref: BAMS:ts xref: BAMS:tsp xref: BIRNLEX:759 xref: BM:TSp xref: DHBA:12794 xref: DMBA:17802 xref: FMA:72620 xref: HBA:265505662 xref: MBA:877 xref: neuronames:786 {source="BIRNLEX:759"} xref: UMLS:C0228553 {source="BIRNLEX:759"} xref: Wikipedia:Tectospinal_tract is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0002316 ! white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/be/Gray670.png" xsd:anyURI property_value: UBPROP:0000012 "NIF and FMA differ in placement (spinal cord vs medulla)" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0002952 name: intermediate acoustic stria namespace: uberon def: "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)." [BIRNLEX:768] synonym: "commissure of held" EXACT [] synonym: "intermediate acoustic stria (held)" EXACT [BIRNLEX:768] synonym: "intermediate acoustic stria of held" EXACT [] synonym: "striae acusticae intermedius" RELATED OMO:0003011 [NeuroNames:603] xref: BAMS:ias xref: BIRNLEX:768 xref: DHBA:12755 xref: FMA:72497 xref: MBA:641 xref: neuronames:603 {source="BIRNLEX:768"} xref: UMLS:C0175455 {source="BIRNLEX:768"} is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis is_a: UBERON:0019293 ! white matter of pontine tegmentum relationship: part_of UBERON:0003023 {source="FMA", source="NIF"} ! pontine tegmentum [Term] id: UBERON:0002953 name: lateral lemniscus namespace: uberon alt_id: UBERON:0003042 def: "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM)." [BIRNLEX:976, Wikipedia:Lateral_lemniscus] subset: uberon_slim synonym: "central acoustic tract" RELATED [NeuroNames:609] synonym: "lateral fillet" EXACT [FMA:72502] synonym: "lateral lemniscus (Reil)" RELATED [NeuroNames:609] synonym: "lemniscus acusticus" RELATED OMO:0003011 [NeuroNames:609] synonym: "lemniscus lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_lemniscus] xref: BAMS:II xref: BAMS:ll xref: BIRNLEX:976 xref: BM:Pons-LL xref: DHBA:12760 xref: DMBA:17774 xref: FMA:72502 xref: HBA:12958 xref: MBA:658 xref: neuronames:609 {source="BIRNLEX:976"} xref: SCTID:362399003 xref: UMLS:C0152375 {source="BIRNLEX:976"} xref: Wikipedia:Lateral_lemniscus is_a: UBERON:0003001 {source="NIFSTD"} ! nervous system lemniscus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/4/44/Lateral_lemniscus.PNG" xsd:anyURI [Term] id: UBERON:0002954 name: dorsal hypothalamic area namespace: uberon def: "A relatively small region of the hypothalamus located inferior to the hypothalamic sulcus." [http://medical-dictionary.thefreedictionary.com/dorsal+hypothalamic+area] comment: ). synonym: "area dorsalis hypothalami" RELATED OMO:0003011 [NeuroNames:430] synonym: "area hypothalamica dorsalis" RELATED OMO:0003011 [NeuroNames:430] synonym: "DH" BROAD OMO:0003000 [BIRNLEX:777, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal hypothalamic zone" EXACT [ZFA:0000347] synonym: "nucleus hypothalamicus dorsalis" RELATED OMO:0003011 [NeuroNames:430] xref: BAMS:DA xref: BAMS:DHA xref: BAMS:HDA xref: BIRNLEX:777 xref: BM:Die-Hy-HDA xref: DHBA:13335 xref: FMA:62339 xref: neuronames:430 {source="BIRNLEX:777"} xref: UMLS:C0175318 {source="BIRNLEX:777"} xref: ZFA:0000347 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001898 {source="NIFSTD"} ! hypothalamus property_value: UBPROP:0000001 "Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain[ZFA:0000347, ISBN:3764351209, ZFA:curator]." xsd:string {source="ZFA:0000347, ISBN:3764351209, ZFA:curator"} property_value: UBPROP:0000008 "In humans it contains the following nuclei: portions of the dorsomedial nucleus [TA] (nucleus dorsomedialis [TA]), endopeduncular nucleus [TA]) (nucleus endopeduncularis [TA]), and portions of the nucleus of the ansa lenticularis (nucleus ansae lenticularis" xsd:string {source="TA"} [Term] id: UBERON:0002955 name: rhomboidal nucleus namespace: uberon synonym: "nucleus commissuralis rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis thalami" RELATED OMO:0003011 [NeuroNames:310] synonym: "Rh" BROAD OMO:0003000 [BIRNLEX:778, NIFSTD:NeuroNames_abbrevSource] synonym: "rhomboid nucleus" EXACT [FMA:62154] synonym: "rhomboid nucleus (Cajal 1904)" RELATED [NeuroNames:310] synonym: "rhomboid nucleus of the thalamus" RELATED [NeuroNames:310] synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154] xref: BAMS:RH xref: BAMS:Rh xref: BIRNLEX:778 xref: BTO:0002458 xref: DHBA:10447 xref: DMBA:16405 xref: FMA:62154 xref: HBA:4433 xref: MBA:189 xref: neuronames:310 {source="BIRNLEX:778"} xref: UMLS:C0228326 {source="BIRNLEX:778"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group property_value: RO:0002171 UBERON:0001922 {source="ABA"} property_value: RO:0002171 UBERON:0001923 {source="ABA"} property_value: RO:0002171 UBERON:0001924 {source="ABA"} property_value: RO:0002171 UBERON:0003036 {source="ABA"} [Term] id: UBERON:0002956 name: granular layer of cerebellar cortex namespace: uberon def: "The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO:0021681] subset: pheno_slim synonym: "cerebellar granular layer" EXACT [GO:0021681] synonym: "cerebellar granule cell layer" EXACT [] synonym: "cerebellar granule layer" EXACT [] synonym: "cerebellum granule cell layer" EXACT [MA:0000993] synonym: "cerebellum granule layer" EXACT [] synonym: "granular layer of cerebellum" RELATED [BTO:0004425] synonym: "granule cell layer of cerebellar cortex" EXACT [BIRNLEX:779] synonym: "stratum granulosum cerebelli" EXACT [BTO:0004425] synonym: "stratum granulosum corticis cerebelli" EXACT OMO:0003011 [FMA:83140, FMA:TA] xref: BIRNLEX:779 xref: BTO:0004425 xref: CALOHA:TS-1247 xref: EMAPA:35217 xref: FMA:83140 xref: MA:0000993 xref: MBA:1143 xref: NCIT:C49138 xref: neuronames:363 {source="BIRNLEX:779"} xref: UMLS:C1708253 {source="ncithesaurus:Granular_Layer_of_the_Cerebellum"} is_a: UBERON:0004130 ! cerebellar layer property_value: RO:0002171 UBERON:0002979 {source="ABA"} [Term] id: UBERON:0002957 name: caudal central oculomotor nucleus namespace: uberon synonym: "caudal central nucleus" EXACT [FMA:72426] synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426] synonym: "CC3" BROAD OMO:0003000 [BIRNLEX:780, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus caudalis centralis oculomotorii" RELATED OMO:0003011 [NeuroNames:500] synonym: "nucleus centralis nervi oculomotorii" RELATED OMO:0003011 [NeuroNames:500] synonym: "oculomotor nerve central caudal nucleus" EXACT [] xref: BAMS:CC3 xref: BIRNLEX:780 xref: DHBA:12200 xref: FMA:72426 xref: HBA:9033 xref: neuronames:500 {source="BIRNLEX:780"} xref: SCTID:369239004 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex [Term] id: UBERON:0002958 name: medial lemniscus of pons namespace: uberon def: "Part of medial lemniscus located within the pons." [BIRNLEX:781] synonym: "lemniscus medial" RELATED [BIRNLEX:887] synonym: "lemniscus medialis (pontis)" RELATED OMO:0003011 [NeuroNames:610] synonym: "medial lemniscus of pons of varolius" EXACT [OBOL:automatic] synonym: "medial lemniscus of the pons" RELATED [NeuroNames:610] synonym: "pons medial lemniscus" EXACT [OBOL:automatic] synonym: "pons of varolius medial lemniscus" EXACT [OBOL:automatic] xref: BAMS:mlp xref: BIRNLEX:781 xref: FMA:72503 xref: neuronames:610 {source="BIRNLEX:781"} xref: SCTID:361572002 xref: UMLS:C0228439 {source="BIRNLEX:781"} is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus relationship: part_of UBERON:0003002 {source="FMA", source="NIFSTD"} ! medial lemniscus relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002959 name: subfascicular nucleus namespace: uberon synonym: "nucleus subfascicularis" RELATED OMO:0003011 [NeuroNames:311] synonym: "SF" BROAD OMO:0003000 [BIRNLEX:783, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:SF xref: BIRNLEX:783 xref: FMA:62155 xref: neuronames:311 {source="BIRNLEX:783"} xref: UMLS:C0175256 {source="BIRNLEX:783"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group [Term] id: UBERON:0002960 name: central oculomotor nucleus namespace: uberon synonym: "C3" BROAD OMO:0003000 [BIRNLEX:786, NIFSTD:NeuroNames_abbrevSource] synonym: "central nucleus of perlia" EXACT [] synonym: "nucleus nervi oculomotorii centralis" RELATED OMO:0003011 [NeuroNames:499] synonym: "nucleus of perlia" EXACT [] synonym: "perlia nucleus of oculomotor nerve" RELATED [NeuroNames:499] synonym: "spitzka's nucleus" EXACT [FMA:72425] xref: BIRNLEX:786 xref: DHBA:12201 xref: FMA:72425 xref: HBA:9034 xref: neuronames:499 {source="BIRNLEX:786"} xref: UMLS:C0175384 {source="BIRNLEX:786"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex [Term] id: UBERON:0002961 name: archicortex namespace: uberon def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex] subset: uberon_slim synonym: "archipallium" EXACT [FMA:62424] synonym: "hippocampal pallium" RELATED [] synonym: "hippocampus" RELATED [NeuroNames:170] synonym: "intralimbic gyrus" RELATED [NeuroNames:170] xref: BAMS:ACx xref: BIRNLEX:787 xref: DHBA:10293 xref: EHDAA2:0004496 xref: FMA:62424 xref: neuronames:170 xref: SCTID:423918008 xref: Wikipedia:Archicortex is_a: UBERON:0014734 {source="FMA"} ! allocortex relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe [Term] id: UBERON:0002963 name: caudal pontine reticular nucleus namespace: uberon def: "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep." [Wikipedia:Caudal_pontine_reticular_nucleus] subset: uberon_slim synonym: "nucleus reticularis pontis caudalis" RELATED OMO:0003011 [Wikipedia:Caudal_pontine_reticular_nucleus] synonym: "pontine reticular nucleus caudal part" RELATED [BAMS:PnC, BAMS:PRNc] synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469] xref: BAMS:PnC xref: BAMS:PRNc xref: BIRNLEX:792 xref: DHBA:12493 xref: FMA:72469 xref: HBA:9162 xref: MBA:1093 xref: neuronames:566 xref: Wikipedia:Caudal_pontine_reticular_nucleus is_a: UBERON:0007413 ! nucleus of pontine reticular formation relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formation property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} [Term] id: UBERON:0002964 name: dorsal oculomotor nucleus namespace: uberon synonym: "D3" BROAD OMO:0003000 [BIRNLEX:793, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal oculomotor cell column" EXACT [FMA:62442] synonym: "nucleus nervi oculomotorii, pars dorsalis" RELATED OMO:0003011 [NeuroNames:493] xref: BAMS:D3 xref: BIRNLEX:793 xref: DHBA:12202 xref: FMA:62442 xref: HBA:9035 xref: neuronames:493 {source="BIRNLEX:793"} xref: UMLS:C0175377 {source="BIRNLEX:793"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex [Term] id: UBERON:0002965 name: rostral intralaminar nuclear group namespace: uberon synonym: "anterior group of intralaminar nuclei" EXACT [DHBA:AILN] synonym: "nuclei intralaminares rostrales" EXACT [BIRNLEX:794] synonym: "RIL" BROAD OMO:0003000 [BIRNLEX:794, NIFSTD:NeuroNames_abbrevSource] synonym: "rostral group of intralaminar nuclei" EXACT [HBA:ILr] synonym: "rostral intralaminar nuclear group" EXACT [FMA:62164] synonym: "rostral intralaminar nuclei" EXACT [FMA:62164] xref: BAMS:RIL xref: BIRNLEX:794 xref: DHBA:10443 xref: FMA:62164 xref: HBA:12929 xref: neuronames:318 {source="BIRNLEX:794"} xref: UMLS:C0175263 {source="BIRNLEX:794"} is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group [Term] id: UBERON:0002967 name: cingulate gyrus namespace: uberon def: "One of the convolutions on the medial surface of the cerebral hemisphere. It surrounds the rostral part of the brain and interhemispheric commissure and forms part of the limbic system. (MSH) One of three essential structures comprising the limbic lobe, the other two being the hippocampus and parahippocampal gyrus. (CSP)." [BIRNLEX:798] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "cingular gyrus" RELATED [NeuroNames:159] synonym: "cingulate area" EXACT [FMA:62434] synonym: "cingulate region" EXACT [FMA:62434] synonym: "falciform lobe" EXACT [FMA:62434] synonym: "gyri cinguli" RELATED OMO:0003011 [NeuroNames:159] synonym: "upper limbic gyrus" EXACT [FMA:62434] xref: BAMS:CG xref: BAMS:CgG xref: BIRNLEX:798 xref: BM:Tel-CG xref: BTO:0003976 xref: DHBA:12156 xref: FMA:62434 xref: HBA:4220 xref: MESH:D006179 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C96217 xref: neuronames:159 {source="BIRNLEX:798"} xref: SCTID:279208003 xref: UMLS:C0018427 {source="BIRNLEX:798", source="ncithesaurus:Cingulate_Gyrus"} xref: Wikipedia:Cingulate_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0000349 ! limbic system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002968 name: central gray substance of pons namespace: uberon synonym: "central gray of pons" EXACT [FMA:72470] synonym: "central gray of the pons" RELATED [BAMS:CGPn] synonym: "griseum centrale pontis" EXACT OMO:0003011 [FMA:72470, FMA:TA] synonym: "pontine central gray" EXACT [FMA:72470] xref: BAMS:CGPn xref: BAMS:PCG xref: BIRNLEX:799 xref: DHBA:146034964 xref: FMA:72470 xref: HBA:10147 xref: MBA:898 xref: neuronames:567 is_a: UBERON:0019263 ! gray matter of hindbrain is_a: UBERON:0035011 ! central gray substance relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formation property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} [Term] id: UBERON:0002969 name: inferior temporal sulcus namespace: uberon def: "The inferior surface of the temporal lobe is concave, and is continuous posteriorly with the tentorial surface of the occipital lobe. It is traversed by the inferior temporal sulcus, which extends from near the occipital pole behind, to within a short distance of the temporal pole in front, but is frequently subdivided by bridging gyri." [Wikipedia:Inferior_temporal_sulcus] synonym: "inferior temporal sulcus-1" EXACT [FMA:83784] synonym: "middle temporal fissure (Crosby)" RELATED [NeuroNames:130] synonym: "middle temporal sulcus (szikla)" EXACT [] synonym: "second temporal sulcus" EXACT [FMA:83784] synonym: "sulcus t2" EXACT [FMA:83784] synonym: "sulcus temporalis inferior" RELATED OMO:0003011 [NeuroNames:130] synonym: "sulcus temporalis medius (Roberts)" RELATED OMO:0003011 [NeuroNames:130] synonym: "sulcus temporalis secundus" RELATED OMO:0003011 [NeuroNames:130] xref: BAMS:its xref: BIRNLEX:800 xref: BM:Tel-Cx-ITS xref: DHBA:10632 xref: FMA:83784 xref: HBA:9379 xref: NCIT:C32793 xref: neuronames:130 {source="BIRNLEX:800"} xref: SCTID:279346007 xref: UMLS:C0228242 {source="ncithesaurus:Inferior_Temporal_Sulcus", source="BIRNLEX:800"} xref: Wikipedia:Inferior_temporal_sulcus is_a: UBERON:0014687 ! temporal sulcus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002970 name: intermediate oculomotor nucleus namespace: uberon synonym: "I3" BROAD OMO:0003000 [BIRNLEX:803, NIFSTD:NeuroNames_abbrevSource] synonym: "intermediate nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "intermediate oculomotor cell column" EXACT [FMA:72420] synonym: "interoculomotor nucleus" RELATED [BAMS:I3] synonym: "nucleus nervi oculomotorii, pars intermedius" RELATED OMO:0003011 [NeuroNames:494] xref: BAMS:I3 xref: BIRNLEX:803 xref: DHBA:12203 xref: FMA:72420 xref: HBA:9036 xref: neuronames:494 {source="BIRNLEX:803"} xref: UMLS:C0175378 {source="BIRNLEX:803"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex [Term] id: UBERON:0002971 name: periolivary nucleus namespace: uberon def: "A nucleus of the superior olivary complex that surrounds the primary superior olivary nuclei." [Wikipedia:Superior_olivary_complex#Periolivary_nuclei] synonym: "nuclei periolivares" EXACT OMO:0003011 [FMA:72475, FMA:TA] synonym: "nucleus periolivaris" RELATED OMO:0003011 [NeuroNames:574] synonym: "peri-olivary nuclei" EXACT [FMA:72475] synonym: "peri-olivary nucleus" EXACT [] synonym: "periolivary nuclei" RELATED [BAMS:POR] synonym: "periolivary region" RELATED [BAMS:POR] synonym: "POI" RELATED OMO:0003000 [DHBA:12464] synonym: "superior olivary complex periolivary region" RELATED [BAMS:POR] xref: BAMS:PeO xref: BAMS:POR xref: BIRNLEX:804 xref: DHBA:12464 xref: EMAPA:35680 xref: HBA:9179 xref: MA:0002757 xref: MBA:122 xref: neuronames:574 {source="BIRNLEX:804"} xref: UMLS:C0175432 {source="BIRNLEX:804"} is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002972 name: centromedian nucleus of thalamus namespace: uberon def: "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]." [Wikipedia:Centromedian_nucleus] subset: human_reference_atlas subset: uberon_slim synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165] synonym: "central nucleus-1" EXACT [FMA:62165] synonym: "centre median nucleus" EXACT [FMA:62165] synonym: "centromedial thalamic nucleus" RELATED [BAMS:CM] synonym: "centromedian nucleus" EXACT [FMA:62165] synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165] synonym: "centromedian thalamic nucleus" EXACT [FMA:62165] synonym: "centrum medianum" EXACT [BIRNLEX:805] synonym: "centrum medianum thalami" EXACT [BIRNLEX:805] synonym: "CMn" BROAD OMO:0003000 [BIRNLEX:805, NIFSTD:NeuroNames_abbrevSource] synonym: "noyau centre median of Luys" EXACT [] synonym: "nucleus centralis centralis" EXACT [BIRNLEX:805] synonym: "nucleus centralis thalami (Hassler)" EXACT [BIRNLEX:805] synonym: "nucleus centri mediani thalami" EXACT [BIRNLEX:805] synonym: "nucleus centromedianus" EXACT [BIRNLEX:805] synonym: "nucleus centromedianus thalami" EXACT [BIRNLEX:805] synonym: "nucleus centromedianus thalami" RELATED OMO:0003011 [Wikipedia:Centromedian_nucleus] synonym: "nucleus centrum medianum" EXACT [BIRNLEX:805] xref: BAMS:CM xref: BAMS:CMn xref: BIRNLEX:805 xref: DHBA:10449 xref: DMBA:16402 xref: EV:0100215 xref: FMA:62165 xref: NCIT:C32284 xref: neuronames:323 {source="BIRNLEX:805"} xref: SCTID:279162007 xref: UMLS:C0228351 {source="BIRNLEX:805"} xref: UMLS:C0920328 {source="ncithesaurus:Centromedian_Nucleus_of_the_Thalamus"} xref: Wikipedia:Centromedian_nucleus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002973 name: parahippocampal gyrus namespace: uberon def: "Component of the temporal lobe on the mesial surface, posterior to the entorhinal cortex. The rostral and caudal boundaries are the posterior end of the netorhinal cortex and the caudal portion of the hippocampus, respectively. The medial boudnary is designated as the medial aspect off the temporal lobe and the lateral boundary is the collateral sulcus (Christine Fennema-Notestine)." [BIRNLEX:807] subset: human_reference_atlas subset: uberon_slim synonym: "gyrus hippocampi" RELATED OMO:0003011 [NeuroNames:164] synonym: "gyrus parahippocampalis" RELATED OMO:0003011 [Wikipedia:Parahippocampal_gyrus] synonym: "gyrus parahippocampi" RELATED OMO:0003011 [NeuroNames:164] synonym: "hippocampal convolution" RELATED [BTO:0004380] synonym: "hippocampal gyrus" EXACT [FMA:61918] xref: BAMS:PHG xref: BIRNLEX:807 xref: BTO:0004380 xref: CALOHA:TS-2038 xref: DHBA:12162 xref: EV:0100181 xref: FMA:61918 xref: GAID:634 xref: HBA:4242 xref: MESH:D020534 xref: NCIT:C33262 xref: neuronames:164 {source="BIRNLEX:807"} xref: SCTID:279205000 xref: UMLS:C0228249 {source="BIRNLEX:807", source="ncithesaurus:Parahippocampal_Gyrus"} xref: Wikipedia:Parahippocampal_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system relationship: part_of UBERON:0001871 {source="FMA"} ! temporal lobe relationship: part_of UBERON:0002600 {source="FMA", source="NIF"} ! limbic lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002974 name: molecular layer of cerebellar cortex namespace: uberon def: "The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells." [GO:0021679] subset: pheno_slim synonym: "cerebellar molecular layer" EXACT [GO:0021679] synonym: "cerebellum molecular cell layer" EXACT [] synonym: "cerebellum molecular layer" EXACT [] synonym: "fasciculi thalami" RELATED OMO:0003011 [NeuroNames:366] synonym: "stratum moleculare corticis cerebelli" EXACT OMO:0003011 [FMA:83897, FMA:TA] synonym: "thalamic fiber tracts" RELATED [NeuroNames:366] xref: BAMS:thf xref: BIRNLEX:810 xref: CALOHA:TS-1248 xref: EMAPA:35221 xref: FMA:83897 xref: MA:0000996 xref: MBA:1144 xref: NCIT:C49139 xref: neuronames:366 {source="BIRNLEX:810"} xref: SCTID:369045002 xref: UMLS:C0228469 {source="BIRNLEX:810"} xref: UMLS:C1289474 {source="BIRNLEX:810"} xref: UMLS:C1709064 {source="ncithesaurus:Molecular_Layer_of_the_Cerebellum"} is_a: UBERON:0004130 ! cerebellar layer property_value: IAO:0000116 "revisit logical definition after using brain layer patterns" xsd:string property_value: UBPROP:0000008 "Compare with ZFA:0000636 - cerebellar crest, which is also composed of parallel fibers but located in a more restricted nucleus within the cerebellum" xsd:string [Term] id: UBERON:0002975 name: medial oculomotor nucleus namespace: uberon synonym: "M3" BROAD OMO:0003000 [BIRNLEX:813, NIFSTD:NeuroNames_abbrevSource] synonym: "medial nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "medial oculomotor cell column" EXACT [FMA:72421] synonym: "nucleus nervi oculomotorii, pars medialis" RELATED OMO:0003011 [NeuroNames:495] xref: BAMS:M3 xref: BIRNLEX:813 xref: DHBA:12204 xref: FMA:72421 xref: HBA:9037 xref: neuronames:495 {source="BIRNLEX:813"} xref: UMLS:C0175379 {source="BIRNLEX:813"} is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex [Term] id: UBERON:0002976 name: preolivary nucleus namespace: uberon synonym: "nucleus preolivaris" RELATED OMO:0003011 [NeuroNames:573] synonym: "preolivary nuclei" EXACT [FMA:72474] xref: BAMS:PrO xref: BIRNLEX:814 xref: DHBA:266441709 xref: FMA:72474 xref: HBA:9180 xref: neuronames:573 {source="BIRNLEX:814"} xref: UMLS:C0175431 {source="BIRNLEX:814"} is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002977 name: triangular septal nucleus namespace: uberon synonym: "nucleus septalis triangularis" RELATED OMO:0003011 [NeuroNames:263] synonym: "nucleus triangularis septi" EXACT OMO:0003011 [FMA:61880, FMA:TA] synonym: "triangular nucleus of septum" EXACT [FMA:61880] synonym: "triangular nucleus of the septum" RELATED [NeuroNames:263] synonym: "triangular nucleus septum (cajal)" EXACT [BIRNLEX:816] xref: BAMS:STN xref: BAMS:TRS xref: BAMS:TS xref: BIRNLEX:816 xref: BM:Tel-Spt-STN xref: DHBA:266441491 xref: DMBA:15779 xref: FMA:61880 xref: MBA:581 xref: neuronames:263 {source="BIRNLEX:816"} xref: UMLS:C0262351 {source="BIRNLEX:816"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex property_value: RO:0002171 UBERON:0007629 {source="ABA"} [Term] id: UBERON:0002978 name: oral part of ventral lateral nucleus namespace: uberon synonym: "nucleus lateralis oralis situs principalis" EXACT [BIRNLEX:817] synonym: "nucleus ventralis lateralis, pars oralis" EXACT [BIRNLEX:817] synonym: "nucleus ventrooralis externus, anterior part (van buren)" EXACT [BIRNLEX:817] synonym: "oral part of the ventral lateral nucleus" RELATED [NeuroNames:338] synonym: "subnucleus rostralis" EXACT [BIRNLEX:817] synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193] synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193] synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193] synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193] synonym: "VLO" BROAD OMO:0003000 [BIRNLEX:817, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VLO xref: BIRNLEX:817 xref: FMA:62193 xref: neuronames:338 {source="BIRNLEX:817"} xref: UMLS:C0175280 {source="BIRNLEX:817"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus [Term] id: UBERON:0002979 name: Purkinje cell layer of cerebellar cortex namespace: uberon def: "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO:0021680] subset: pheno_slim synonym: "cerebellar Purkinje cell layer" EXACT [FMA:83896, GO:0021694] synonym: "cerebellum Purkinje cell layer" EXACT [] synonym: "cerebellum Purkinje layer" EXACT [] synonym: "nuclei reticulares (thalami)" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus reticularis" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus reticulatus (thalami)" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus thalamicus reticularis" RELATED OMO:0003011 [NeuroNames:365] synonym: "Purkinje cell layer" EXACT [FMA:83896] synonym: "reticular nucleus thalamus (Arnold)" RELATED [NeuroNames:365] synonym: "reticulatum thalami (Hassler)" RELATED OMO:0003011 [NeuroNames:365] xref: BIRNLEX:818 xref: BTO:0004909 xref: EMAPA:35223 xref: FMA:83896 xref: MA:0000997 xref: MBA:1145 xref: NCIT:C49140 xref: neuronames:365 {source="BIRNLEX:818"} xref: SCTID:369046001 xref: UMLS:C0228469 {source="BIRNLEX:818"} xref: UMLS:C1289475 {source="BIRNLEX:818"} xref: UMLS:C1709776 {source="ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum"} is_a: UBERON:0004130 ! cerebellar layer property_value: RO:0002171 UBERON:0002956 {source="ABA"} [Term] id: UBERON:0002980 name: opercular part of inferior frontal gyrus namespace: uberon def: "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus." [BIRNLEX:823] subset: human_reference_atlas synonym: "gyrus frontalis inferior, pars opercularis" EXACT OMO:0003011 [FMA:61981, FMA:TA] synonym: "inferior frontal gyrus, opercular part" RELATED [BAMS:IFGOp] synonym: "inferior frontal gyrus, pars opercularis" BROAD [http://orcid.org/0000-0001-6755-0259] synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981] synonym: "pars opercularis" EXACT OMO:0003011 [FMA:61981, FMA:TA] synonym: "pars opercularis gyri frontalis inferioris" EXACT [BIRNLEX:823] synonym: "pars posterior of inferior frontal gyrus" EXACT OMO:0003011 [FMA:61981, FMA:TA] synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981] xref: BAMS:IFGOp xref: BAMS:OpIFG xref: BIRNLEX:823 xref: DHBA:12119 xref: FMA:61981 xref: HBA:4041 xref: neuronames:87 {source="BIRNLEX:823"} xref: UMLS:C0262296 {source="BIRNLEX:823"} xref: Wikipedia:Opercular_part_of_inferior_frontal_gyrus relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002981 name: pulvinar nucleus namespace: uberon def: "One of a set of nuclei located in the posterior thalamus, that projects to all or nearly all extra-striate visual areas." [BIRNLEX:824] subset: human_reference_atlas subset: uberon_slim synonym: "nuclei pulvinares" EXACT OMO:0003011 [FMA:62178, FMA:TA] synonym: "nucleus pulvinaris" RELATED OMO:0003011 [NeuroNames:328] synonym: "nucleus pulvinaris thalami" RELATED OMO:0003011 [NeuroNames:328] synonym: "posterior nucleus (P)" RELATED [NeuroNames:328] synonym: "Pul" BROAD OMO:0003000 [BIRNLEX:824, NIFSTD:NeuroNames_abbrevSource] synonym: "pulvinar" EXACT [FMA:62178] synonym: "pulvinar nuclei" EXACT [FMA:62178] synonym: "pulvinar thalami" EXACT [BIRNLEX:824] synonym: "pulvinar thalamus" RELATED [NeuroNames:328] xref: BAMS:PUL xref: BAMS:Pul xref: BAMS:Pulv xref: BIRNLEX:824 xref: BM:Die-Th-Pl xref: BTO:0004352 xref: DHBA:10409 xref: EV:0100213 xref: FMA:62178 xref: GAID:662 xref: MESH:D020649 xref: neuronames:328 {source="BIRNLEX:824"} xref: SCTID:279157006 xref: UMLS:C0152347 {source="BIRNLEX:824"} xref: Wikipedia:Pulvinar_nuclei is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002736 {source="FMA"} ! lateral nuclear group of thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002982 name: inferior pulvinar nucleus namespace: uberon def: "One of four subdivisions recognized in the primate pulvinar based on initially on topography, located ventrally between the medial and lateral geniculate bodies (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 238)." [BIRNLEX:830] synonym: "IPul" BROAD OMO:0003000 [BIRNLEX:830, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris inferior" EXACT [BIRNLEX:830] synonym: "nucleus pulvinaris inferior thalami" EXACT [BIRNLEX:830] synonym: "nucleus pulvinaris thalami, pars inferior" EXACT [BIRNLEX:830] xref: BAMS:IPul xref: BAMS:Ipul xref: BIRNLEX:830 xref: BM:Die-Th-Pl-Pli xref: DHBA:10413 xref: FMA:62183 xref: HBA:4414 xref: neuronames:332 {source="BIRNLEX:830"} xref: UMLS:C0228346 {source="BIRNLEX:830"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002981 ! pulvinar nucleus [Term] id: UBERON:0002983 name: lateral posterior nucleus of thalamus namespace: uberon def: "The lateral posterior nucleus is a nucleus of the thalamus. It acts in concert with the pulvinar." [Wikipedia:Lateral_posterior_nucleus_of_thalamus] subset: human_reference_atlas synonym: "lateral posterior complex" RELATED [BAMS:LP] synonym: "lateral posterior nucleus" EXACT [FMA:62177] synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177] synonym: "lateral posterior nucleus of the thalamus" EXACT [BIRNLEX:835] synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177] synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177] synonym: "LP" BROAD OMO:0003000 [BIRNLEX:835, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus dorso-caudalis" EXACT [BIRNLEX:835] synonym: "nucleus dorsocaudalis (Hassler)" EXACT [BIRNLEX:835] synonym: "nucleus lateralis posterior" EXACT [BIRNLEX:835] synonym: "nucleus lateralis posterior thalami" EXACT [BIRNLEX:835] synonym: "nucleus lateralis thalami posterior" EXACT [BIRNLEX:835] synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177] xref: BAMS:LP xref: BIRNLEX:835 xref: BM:Die-Th-LP xref: BTO:0004351 xref: DHBA:10408 xref: DMBA:16435 xref: EV:0100212 xref: FMA:62177 xref: HBA:4410 xref: MBA:218 xref: NCIT:C32944 xref: neuronames:327 {source="BIRNLEX:835"} xref: SCTID:279155003 xref: UMLS:C0228341 {source="ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus", source="BIRNLEX:835"} xref: Wikipedia:Lateral_posterior_nucleus_of_thalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002736 {source="NIFSTD"} ! lateral nuclear group of thalamus property_value: RO:0002171 UBERON:0002709 {source="ABA"} property_value: RO:0002171 UBERON:0003033 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002984 name: lateral dorsal nucleus namespace: uberon def: "The lateral dorsal nucleus is a nucleus of the thalamus. It acts in concert with the anterior nuclei of thalamus. It receives significant input from several subdivisions of visual cortex, and has a primary output to parietal cortex on the dorsolateral cortical convexity, giving it access to limbic forebrain nuclei important for emotion and behavior functions." [Wikipedia:Lateral_dorsal_nucleus_of_thalamus] synonym: "dorsal thalamus, lateral group" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176] synonym: "lateral dorsal nucleus of the thalamus" RELATED [NeuroNames:326] synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176] synonym: "lateral group of nuclei, dorsal division" RELATED [HBA:DTLd] synonym: "laterodorsal nucleus nucleus of thalamus" EXACT [BIRNLEX:838] synonym: "laterodorsal nucleus of the thalamus" RELATED [NeuroNames:326] synonym: "laterodorsal nucleus thalamic nucleus" EXACT [BIRNLEX:838] synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176] synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176] synonym: "LD" BROAD OMO:0003000 [BIRNLEX:838, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus dorsalis lateralis thalami" EXACT OMO:0003011 [FMA:62176, FMA:TA] synonym: "nucleus dorsalis superficialis (Hassler)" EXACT [BIRNLEX:838] synonym: "nucleus dorsolateralis thalami" EXACT [BIRNLEX:838] synonym: "nucleus lateralis dorsalis" EXACT [BIRNLEX:838] synonym: "nucleus lateralis dorsalis of thalamus" EXACT [BIRNLEX:838] synonym: "nucleus lateralis dorsalis thalami" EXACT [BIRNLEX:838] synonym: "nucleus lateralis thalami dorsalis" EXACT [BIRNLEX:838] xref: BAMS:LD xref: BIRNLEX:838 xref: BM:Die-Th-LD xref: BTO:0004349 xref: BTO:0004350 xref: DHBA:10396 xref: EV:0100211 xref: FMA:62176 xref: HBA:4399 xref: MBA:155 xref: neuronames:326 {source="BIRNLEX:838"} xref: SCTID:279154004 xref: UMLS:C0228342 {source="BIRNLEX:838"} xref: Wikipedia:Lateral_dorsal_nucleus_of_thalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002736 {source="NIFSTD"} ! lateral nuclear group of thalamus property_value: RO:0002171 UBERON:0002679 {source="ABA"} property_value: RO:0002171 UBERON:0002681 {source="ABA"} property_value: RO:0002171 UBERON:0002685 {source="ABA"} [Term] id: UBERON:0002985 name: ventral nucleus of medial geniculate body namespace: uberon def: "Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16)." [BIRNLEX:845] synonym: "medial geniculate complex ventral part" RELATED [BAMS:MGv] synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] synonym: "medial geniculate nucleus ventral part" RELATED [BAMS:MGv] synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217] synonym: "medial nucleus of medial geniculate complex" EXACT [BIRNLEX:845] synonym: "MGV" BROAD OMO:0003000 [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [BIRNLEX:845] synonym: "nucleus geniculatus medialis fasciculosis (Hassler)" EXACT OMO:0003011 [FMA:62217, FMA:TA] synonym: "nucleus geniculatus medialis fasciculosus (Hassler)" EXACT [BIRNLEX:845] synonym: "nucleus geniculatus medialis pars ventralis" EXACT [BIRNLEX:845] synonym: "nucleus ventralis corporis geniculati medialis" EXACT OMO:0003011 [FMA:62217, FMA:TA] synonym: "ventral nucleus" RELATED [NeuroNames:357] synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217] synonym: "ventral nucleus of the medial geniculate body" RELATED [NeuroNames:357] synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217] synonym: "VMG" BROAD OMO:0003000 [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:MGV xref: BAMS:MGv xref: BAMS:VMG xref: BIRNLEX:845 xref: BM:Die-Th-MG-MGv xref: BTO:0002671 xref: DHBA:10438 xref: FMA:62217 xref: HBA:4445 xref: MBA:1079 xref: neuronames:357 {source="BIRNLEX:845"} xref: UMLS:C0175295 {source="BIRNLEX:845"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001927 ! medial geniculate body property_value: RO:0002171 UBERON:0002758 {source="ABA"} property_value: RO:0002171 UBERON:0002759 {source="ABA"} [Term] id: UBERON:0002987 name: anterior spinocerebellar tract namespace: uberon def: "Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II." [BIRNLEX:848] subset: uberon_slim synonym: "Gower's tract" EXACT [BIRNLEX:848] synonym: "Gowers' tract" EXACT [FMA:72642] synonym: "tractus spinocerebellaris anterior" RELATED OMO:0003011 [NeuroNames:808] synonym: "tractus spinocerebellaris ventralis" RELATED OMO:0003011 [NeuroNames:808] synonym: "ventral spinocerebellar tract" EXACT [FMA:72642] synonym: "ventral spinocerebellar tract (Gowers)" RELATED [NeuroNames:808] xref: BAMS:asc xref: BAMS:sctv xref: BAMS:vsc xref: BIRNLEX:848 xref: DHBA:12801 xref: DMBA:17805 xref: FMA:72642 xref: MBA:866 xref: neuronames:808 {source="BIRNLEX:848"} xref: SCTID:369285001 xref: UMLS:C0175561 {source="BIRNLEX:848"} xref: Wikipedia:Ventral_spinocerebellar_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0005413 ! spinocerebellar tract property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg" xsd:anyURI property_value: UBPROP:0000001 "The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted][Wikipedia:Ventral_spinocerebellar_tract]." xsd:string {source="Wikipedia:Ventral_spinocerebellar_tract"} [Term] id: UBERON:0002990 name: mammillothalamic tract of hypothalamus namespace: uberon def: "Part of mammillothalamic tract contained within the hypothalamus." [BIRNLEX:855] subset: human_reference_atlas subset: pheno_slim synonym: "fasciculus mamillothalamicus (hypothalami)" RELATED OMO:0003011 [NeuroNames:424] synonym: "mammillothalamic tract of the hypothalamus" RELATED [NeuroNames:424] synonym: "MTHH" BROAD OMO:0003000 [BIRNLEX:855, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:mthh xref: BIRNLEX:855 xref: EMAPA:37904 {source="MA:th"} xref: FMA:62059 xref: neuronames:424 {source="BIRNLEX:855"} xref: SCTID:369139008 xref: UMLS:C0228375 {source="BIRNLEX:855"} xref: UMLS:C1289566 {source="BIRNLEX:855"} is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region relationship: part_of UBERON:0006695 ! mammillary axonal complex property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002991 name: supramammillary commissure namespace: uberon synonym: "commissura supramamillaris" RELATED OMO:0003011 [NeuroNames:421] synonym: "commissura supramammillaris" RELATED OMO:0003011 [NeuroNames:421] synonym: "commissure of forel" EXACT [] synonym: "commissure supramammillary" RELATED [FMA:62056] synonym: "commissure y" EXACT [FMA:62056] synonym: "decussation supramamilaris" EXACT OMO:0003011 [FMA:62056, FMA:TA] synonym: "decussation supramamillaris" RELATED OMO:0003011 [NeuroNames:421] synonym: "postmammillary decussation" EXACT [FMA:62056] synonym: "SUMX" BROAD OMO:0003000 [BIRNLEX:859, NIFSTD:NeuroNames_abbrevSource] synonym: "supramammillary decussation" EXACT [FMA:62056] xref: BAMS:smd xref: BAMS:sumx xref: BIRNLEX:859 xref: FMA:62056 xref: MBA:341 xref: neuronames:421 {source="BIRNLEX:859"} xref: SCTID:369148003 xref: UMLS:C0228379 {source="BIRNLEX:859"} is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region [Term] id: UBERON:0002992 name: paratenial nucleus namespace: uberon def: "One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris." [BTO:0002457] synonym: "nuclei parataeniales thalami" RELATED OMO:0003011 [NeuroNames:307] synonym: "nucleus parataenialis" EXACT OMO:0003011 [BTO:0002457, FMA:62151, FMA:TA] synonym: "nucleus parataenialis (Hassler)" RELATED OMO:0003011 [NeuroNames:307] synonym: "nucleus parataenialis thalami" RELATED [BTO:0002457] synonym: "nucleus paratenialis thalami" RELATED OMO:0003011 [NeuroNames:307] synonym: "parataenial nucleus" EXACT [FMA:62151] synonym: "paratenial nucleus of thalamus" RELATED [BTO:0002457] synonym: "paratenial nucleus of the thalamus" RELATED [NeuroNames:307] synonym: "paratenial thalamic nucleus" EXACT [FMA:62151] synonym: "PT" BROAD OMO:0003000 [BIRNLEX:860, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PT xref: BIRNLEX:860 xref: BTO:0002457 xref: DHBA:10404 xref: DMBA:16410 xref: FMA:62151 xref: HBA:4405 xref: MBA:15 xref: neuronames:307 {source="BIRNLEX:860"} xref: SCTID:422800004 xref: UMLS:C0175252 {source="BIRNLEX:860"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002705 {source="ABA", source="FMA", source="NIF"} ! midline nuclear group property_value: RO:0002171 UBERON:0001920 {source="ABA"} [Term] id: UBERON:0002993 name: inferior central nucleus namespace: uberon subset: uberon_slim synonym: "inferior central nucleus (of roller)" EXACT [FMA:72466] synonym: "inferior central nucleus of raphe" EXACT [FMA:72466] synonym: "inferior central tegmental nucleus" EXACT [FMA:72466] synonym: "nucleus centralis inferior" EXACT OMO:0003011 [FMA:72466, FMA:TA] synonym: "nucleus tegmentalis centralis inferior" EXACT OMO:0003011 [FMA:72466, FMA:TA] xref: BIRNLEX:861 xref: FMA:72466 xref: neuronames:563 is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formation property_value: IAO:0000116 "TODO - compare with UBERON:0002881 ! sublingual nucleus; also to dorsal raphe nucleus. Check if the same as ZFA 'inferior raphe nucleus'. See comments on https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855" xsd:string [Term] id: UBERON:0002995 name: substantia nigra pars lateralis namespace: uberon synonym: "internal capsule (Burdach)" RELATED [NeuroNames:198] synonym: "lateral part of substantia nigra" EXACT [FMA:76844] synonym: "pars lateralis" EXACT [BIRNLEX:866] synonym: "pars lateralis substantiae nigrae" EXACT OMO:0003011 [FMA:76844, FMA:TA] synonym: "substantia nigra lateral part" RELATED [BAMS:SNL, BAMS:SNl] synonym: "substantia nigra, lateral division" RELATED [BAMS:SNL] synonym: "substantia nigra, lateral part" EXACT [ABA:SNI] synonym: "substantia nigra, pars lateralis" RELATED [BAMS:SNL] xref: ABA:SNI xref: BAMS:SNL xref: BAMS:SNl xref: BIRNLEX:866 xref: DHBA:12257 xref: EMAPA:35837 xref: FMA:76844 xref: MA:0001065 xref: MBA:615 xref: neuronames:198 {source="BIRNLEX:866"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002038 {source="MA"} ! substantia nigra property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0003040 {source="ABA"} property_value: UBPROP:0000012 "WP says 'Sometimes, a third region, the pars lateralis, is mentioned, though it is usually classified as part of the pars reticulata' -- NIFSTD makes this a part of but MBA has reticulata and lateralis as disjoit" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0002996 name: nucleus of optic tract namespace: uberon def: "Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive input from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862)." [BIRNLEX:868] synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403] synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403] synonym: "nucleus magnocellularis tractus optici" RELATED OMO:0003011 [NeuroNames:470] synonym: "nucleus of the optic tract" EXACT [BIRNLEX:868] synonym: "nucleus tractus optici" RELATED OMO:0003011 [NeuroNames:470] synonym: "optic tract nucleus" EXACT [FMA:72403] xref: BAMS:NOT xref: BAMS:OTN xref: BIRNLEX:868 xref: FMA:72403 xref: HBA:9080 xref: MBA:628 xref: neuronames:470 {source="BIRNLEX:868"} xref: UMLS:C0175356 {source="BIRNLEX:868"} is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0001944 ! pretectal region property_value: RO:0002171 UBERON:0002565 {source="ABA"} property_value: RO:0002171 UBERON:0002711 {source="ABA"} property_value: RO:0002171 UBERON:0006848 {source="ABA"} [Term] id: UBERON:0002997 name: nucleus of medial eminence namespace: uberon synonym: "medial eminence nucleus" EXACT [FMA:72467] synonym: "nucleus eminentiae teretis" EXACT OMO:0003011 [FMA:72467, FMA:TA] synonym: "nucleus of eminentia teres" EXACT [FMA:72467] xref: BAMS:MeE xref: BIRNLEX:870 xref: FMA:72467 xref: neuronames:564 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002998 name: inferior frontal gyrus namespace: uberon def: "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the inferior frontal sulcus whereas the caudal boundary is the precentral gyrus. The medial and lateral boundaries are the lateral bank of the inferior frontal sulcus and the medial bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christein Fennema-Notestine)." [BIRNLEX:873] subset: human_reference_atlas subset: uberon_slim synonym: "gyrus F3" RELATED OMO:0003011 [NeuroNames:85] synonym: "gyrus frontalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_frontal_gyrus] synonym: "gyrus frontalis tertius" RELATED OMO:0003011 [NeuroNames:85] synonym: "inferior frontal convolution" EXACT [FMA:61860] synonym: "regio subfrontalis" RELATED OMO:0003011 [NeuroNames:85] xref: BAMS:IFG xref: BIRNLEX:873 xref: BTO:0004835 xref: DHBA:12117 xref: FMA:61860 xref: HBA:4035 xref: NCIT:C32774 xref: ncithesaurus:Inferior_Frontal_Gyrus xref: neuronames:85 {source="BIRNLEX:873"} xref: SCTID:362333004 xref: UMLS:C0152298 {source="BIRNLEX:873", source="ncithesaurus:Inferior_Frontal_Convolution"} xref: Wikipedia:Inferior_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Inferior_frontal_gyrus.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "ncit has two classes, but these are exact synonyms in FMA" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0002999 name: oral pontine reticular nucleus namespace: uberon def: "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]." [Wikipedia:Oral_pontine_reticular_nucleus] subset: uberon_slim synonym: "nucleus reticularis pontis oralis" RELATED OMO:0003011 [Wikipedia:Oral_pontine_reticular_nucleus] synonym: "pontine reticular nucleus rostral part" RELATED [BAMS:PRNr] synonym: "pontine reticular nucleus, oral part" RELATED [BAMS:PnO] synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468] xref: BAMS:PnO xref: BAMS:PRNr xref: BIRNLEX:875 xref: DHBA:12494 xref: FMA:72468 xref: HBA:9166 xref: MBA:552 xref: neuronames:565 xref: Wikipedia:Oral_pontine_reticular_nucleus is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0003001 name: nervous system lemniscus namespace: uberon def: "A bundle or band of sensory nerve fibers." [BIRNLEX:881, Wikipedia:Lemniscus_(anatomy)] subset: uberon_slim synonym: "lemniscus" EXACT [BIRNLEX:881, FMA:83676] synonym: "neuraxis lemniscus" EXACT [FMA:83676] xref: BIRNLEX:881 xref: FMA:83676 xref: Wikipedia:Lemniscus_(anatomy) is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0003002 name: medial lemniscus namespace: uberon def: "Fiber tract arising predominantly from neurons in the nucleus gracilis and nucleus cuneatus in the medulla, projecting to thalamus. Fibers cross in the decussation of the medial lemniscus." [BIRNLEX:887] subset: uberon_slim synonym: "lemniscus medialis" RELATED OMO:0003011 [Wikipedia:Medial_lemniscus] synonym: "Reil's band" RELATED [Wikipedia:Medial_lemniscus] synonym: "Reil's ribbon" RELATED [Wikipedia:Medial_lemniscus] xref: BAMS:MEL xref: BAMS:ml xref: BIRNLEX:887 xref: BM:LM xref: DHBA:12763 xref: DMBA:17776 xref: FMA:83675 xref: HBA:12961 xref: MBA:697 xref: neuronames:1583 xref: SCTID:362398006 xref: Wikipedia:Medial_lemniscus is_a: UBERON:0003001 ! nervous system lemniscus relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray759.png" xsd:anyURI [Term] id: UBERON:0003004 name: median raphe nucleus namespace: uberon def: "The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, Wikipedia:Median_raphe_nucleus] subset: uberon_slim synonym: "cell group b8" EXACT [] synonym: "medial raphe nucleus" EXACT [] synonym: "median nucleus of the raphe" EXACT [FMA:72465] synonym: "MRN" EXACT [] synonym: "nucleus centralis superior" RELATED OMO:0003011 [Wikipedia:Median_raphe_nucleus] synonym: "nucleus raphes medianus" EXACT OMO:0003011 [FMA:72465, FMA:TA] synonym: "superior central nucleus" EXACT [FMA:72465] synonym: "superior central nucleus raphe" EXACT [FMA:72465] synonym: "superior central tegmental nucleus" EXACT [FMA:72465] xref: BAMS:MnR xref: BIRNLEX:889 xref: BM:MR xref: DHBA:12235 xref: EMAPA:35551 xref: FMA:72465 xref: MBA:679 xref: neuronames:1391 xref: Wikipedia:Median_raphe_nucleus is_a: UBERON:0007415 ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei property_value: IAO:0000116 "TODO - The term medial raphe nucleus refers to a composite structure that consists of the superior central nucleus and the inferior central nucleus of the pontine reticular formation ( Carpenter-1983 )" xsd:string {source="http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=h&ID=1391"} property_value: RO:0002171 UBERON:0002047 {source="ABA"} property_value: RO:0002171 UBERON:0002148 {source="ABA"} property_value: RO:0002171 UBERON:0002267 {source="ABA"} property_value: RO:0002171 UBERON:0002587 {source="ABA"} [Term] id: UBERON:0003005 name: dorsal longitudinal fasciculus of midbrain namespace: uberon def: "Part of dorsal longitudinal fasciculus located in the midbrain tegmentum." [BIRNLEX:893] synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic] synonym: "DLFMB" BROAD OMO:0003000 [BIRNLEX:893, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal longitudinal fasciculus of the midbrain" RELATED [NeuroNames:525] synonym: "fasciculus longitudinalis dorsalis (mesencephali)" RELATED OMO:0003011 [NeuroNames:525] synonym: "fasciculus of Schutz of midbrain" EXACT [OBOL:automatic] synonym: "midbrain bundle of Schutz" EXACT [OBOL:automatic] synonym: "midbrain dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "midbrain fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "midbrain posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of midbrain" EXACT [OBOL:automatic] xref: BAMS:dlfmb xref: BIRNLEX:893 xref: FMA:72453 xref: neuronames:525 {source="BIRNLEX:893"} xref: UMLS:C0262222 {source="BIRNLEX:893"} is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus [Term] id: UBERON:0003006 name: dorsal nucleus of lateral lemniscus namespace: uberon synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483] synonym: "nucleus lemnisci lateralis dorsalis" RELATED OMO:0003011 [NeuroNames:591] synonym: "nucleus lemnisci lateralis pars dorsalis" RELATED OMO:0003011 [NeuroNames:591] synonym: "nucleus of the lateral lemniscus dorsal part" RELATED [BAMS:NLLd] synonym: "nucleus of the lateral lemniscus, dorsal part" EXACT [ABA:NLLd] synonym: "nucleus posterior lemnisci lateralis" EXACT OMO:0003011 [FMA:72483, FMA:TA] synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483] xref: BAMS:DLL xref: BAMS:NLLd xref: BIRNLEX:894 xref: BM:LLD xref: DHBA:12455 xref: DMBA:16860 xref: FMA:72483 xref: HBA:9139 xref: MBA:82 xref: neuronames:591 {source="BIRNLEX:894"} xref: UMLS:C0175443 {source="BIRNLEX:894"} is_a: UBERON:0006840 ! nucleus of lateral lemniscus [Term] id: UBERON:0003007 name: lateral parabrachial nucleus namespace: uberon def: "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Lateral_parabrachial_nucleus] subset: uberon_slim synonym: "nucleus parabrachialis lateralis" RELATED OMO:0003011 [NeuroNames:588] synonym: "parabrachial nucleus, lateral division" RELATED [NeuroNames:588] xref: BAMS:LPB xref: BIRNLEX:897 xref: DHBA:12482 xref: DMBA:16852 xref: FMA:72481 xref: HBA:9145 xref: MBA:881 xref: neuronames:588 {source="BIRNLEX:897"} xref: UMLS:C0175445 {source="BIRNLEX:897"} xref: Wikipedia:Lateral_parabrachial_nucleus is_a: UBERON:0007634 ! parabrachial nucleus relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0003008 name: dorsal longitudinal fasciculus of hypothalamus namespace: uberon def: "Part of dorsal longitudinal fasciculus located within the hypothalamus." [BIRNLEX:898] synonym: "DLFH" BROAD OMO:0003000 [BIRNLEX:898, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal longitudinal fasciculus of the hypothalamus" RELATED [NeuroNames:432] synonym: "fasciculus longitudinalis dorsalis (hypothalami)" RELATED OMO:0003011 [NeuroNames:432] xref: BAMS:dlfh xref: BIRNLEX:898 xref: FMA:62063 xref: neuronames:432 {source="BIRNLEX:898"} xref: UMLS:C0262221 {source="BIRNLEX:898"} is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus property_value: UBPROP:0000012 "classified as tract in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0003009 name: dorsal tegmental decussation namespace: uberon synonym: "chiasma fibrorum proprium tecti" RELATED OMO:0003011 [NeuroNames:523] synonym: "decussatio dorsalis tegmenti" RELATED OMO:0003011 [NeuroNames:523] synonym: "decussatio fibrorum medialium tecti" RELATED OMO:0003011 [NeuroNames:523] synonym: "decussatio tegmentalis dorsalis (Meynert)" RELATED OMO:0003011 [NeuroNames:523] synonym: "decussatio tegmentalis posterior" EXACT OMO:0003011 [FMA:72451, FMA:TA] synonym: "decussationes tegmentales" RELATED OMO:0003011 [NeuroNames:523] synonym: "decussationes tegmenti" RELATED OMO:0003011 [NeuroNames:523] synonym: "dorsal fountain decussation" EXACT [FMA:72451] synonym: "dorsal tegmental decussation (Meynert)" RELATED [NeuroNames:523] synonym: "DTGX" BROAD OMO:0003000 [BIRNLEX:901, NIFSTD:NeuroNames_abbrevSource] synonym: "fountain decussation of Meynert" EXACT [] synonym: "Meynert's decussation" EXACT [FMA:72451] synonym: "posterior tegmental decussation" EXACT [FMA:72451] xref: BAMS:dtd xref: BAMS:dtgx xref: BIRNLEX:901 xref: DHBA:12340 xref: FMA:72451 xref: neuronames:523 {source="BIRNLEX:901"} xref: SCTID:369248009 xref: UMLS:C0152370 {source="BIRNLEX:901"} is_a: UBERON:0007418 {source="FMA"} ! neural decussation relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum [Term] id: UBERON:0003010 name: lateral pes lemniscus namespace: uberon synonym: "deep pes lemniscus" EXACT [FMA:72459] synonym: "fasciculi laterales pontis" RELATED OMO:0003011 [NeuroNames:531] synonym: "fussschleife" EXACT OMO:0003011 [FMA:72459, FMA:TA] synonym: "lateral pontine bundle" EXACT [FMA:72459] synonym: "laterale haubenfussschleife" EXACT [] synonym: "laterale pontine buendel" EXACT [] synonym: "LPL" BROAD OMO:0003000 [BIRNLEX:902, NIFSTD:NeuroNames_abbrevSource] synonym: "pes lemnisci profundus" RELATED OMO:0003011 [NeuroNames:531] synonym: "pes lemniscus lateralis" RELATED OMO:0003011 [NeuroNames:531] synonym: "pes lemniscus profond" EXACT OMO:0003011 [FMA:72459, FMA:TA] xref: BAMS:lpl xref: BIRNLEX:902 xref: FMA:72459 xref: neuronames:531 {source="BIRNLEX:902"} xref: UMLS:C0175409 {source="BIRNLEX:902"} is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum [Term] id: UBERON:0003011 name: facial motor nucleus namespace: uberon def: "Nucleus located in the pontine tegmentum containing motor neurons that innervate the muscles of the face. Some neurons that project to the cerebellum have also been identified in some species." [BIRNLEX:903] comment: see comments for facial nucleus. also check ZFA/pons subset: uberon_slim subset: vertebrate_core synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582] synonym: "facial motor nucleus" EXACT [FMA:54582] synonym: "facial nerve motor nucleus" EXACT [ZFA:0000206] synonym: "facial nucleus" RELATED [Wikipedia:Facial_nucleus] synonym: "motor nucleus of facial nerve" EXACT [FMA:54582] synonym: "motor nucleus of VII" EXACT [FMA:54582] synonym: "motor nucleus VII" EXACT [ZFA:0000206] synonym: "n. nervi facialis" RELATED OMO:0003011 [Wikipedia:Facial_motor_nucleus] synonym: "nucleus facialis" RELATED OMO:0003011 [NeuroNames:586] synonym: "nucleus motorius nervi facialis" EXACT [ZFA:0000206] synonym: "nucleus nervi facialis" RELATED OMO:0003011 [NeuroNames:586] synonym: "nVII" EXACT [ZFA:0000206] xref: BAMS:7 xref: BAMS:VII xref: BIRNLEX:903 xref: DMBA:17317 xref: FMA:54582 xref: HBA:9142 xref: MBA:661 xref: neuronames:586 {source="BIRNLEX:903"} xref: TAO:0000206 xref: UMLS:C0175442 {source="BIRNLEX:903"} xref: Wikipedia:Facial_motor_nucleus xref: ZFA:0000206 is_a: UBERON:0000127 ! facial nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png" xsd:anyURI property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0007632 {source="ABA"} [Term] id: UBERON:0003012 name: flocculonodular lobe namespace: uberon def: "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]." [Wikipedia:Flocculonodular_lobe] subset: pheno_slim subset: uberon_slim synonym: "cerebellum flocculonodular lobe" EXACT [MA:0002965] synonym: "flocculonodular lobe" EXACT [FMA:72253] synonym: "flocculonodular lobe of cerebellum" EXACT [FMA:72253] synonym: "lobus flocculonodularis" EXACT OMO:0003011 [FMA:72253, FMA:TA] synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253] xref: BAMS:FNL xref: BIRNLEX:904 xref: DHBA:12852 xref: EV:0100297 xref: FMA:72253 xref: HBA:12944 xref: MA:0002965 xref: neuronames:679 xref: SCTID:279361008 xref: Wikipedia:Flocculonodular_lobe is_a: UBERON:0005293 ! cerebellum lobe relationship: part_of UBERON:0014642 {source="Wikipedia"} ! vestibulocerebellum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png" xsd:anyURI property_value: RO:0002171 UBERON:0002131 property_value: RO:0002171 UBERON:0004002 property_value: UBPROP:0000009 "receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance [MP:0009961]" xsd:string [Term] id: UBERON:0003013 name: alar central lobule namespace: uberon def: "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]." [Wikipedia:Alar_central_lobule] subset: uberon_slim synonym: "ala centralis" EXACT OMO:0003011 [FMA:72517, FMA:TA] synonym: "ala lobuli centralis" RELATED OMO:0003011 [Wikipedia:Alar_central_lobule] synonym: "alae of central lobule" EXACT [FMA:72517] synonym: "lobule II and III of hemisphere of cerebellum" RELATED [FMA:72517] synonym: "lobules II, III of vermis" EXACT [FMA:72517] xref: BAMS:ACL xref: BIRNLEX:907 xref: FMA:72517 xref: neuronames:655 xref: Wikipedia:Alar_central_lobule is_a: UBERON:0004003 {source="FMA"} ! cerebellum hemisphere lobule property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray702.png" xsd:anyURI [Term] id: UBERON:0003015 name: anterior quadrangular lobule namespace: uberon synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516] synonym: "anterior semilunar lobule" EXACT [FMA:72516] synonym: "lobulus quadrangularis (pars rostralis)" EXACT OMO:0003011 [FMA:72516, FMA:TA] synonym: "lobulus quadrangularis anterior cerebelli [h iv et v]" EXACT OMO:0003011 [FMA:72516, FMA:TA] synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516] xref: BAMS:AQL xref: BIRNLEX:913 xref: FMA:72516 xref: neuronames:654 xref: SCTID:369041006 is_a: UBERON:0004003 ! cerebellum hemisphere lobule [Term] id: UBERON:0003016 name: postcommissural fornix of brain namespace: uberon def: "The posterior fibers of the fornix, which continue through the hypothalamus to the mammillary bodies; then to the anterior nuclei of thalamus, which project to the cingulate cortex." [https://github.com/obophenotype/uberon/issues/1277, Wikipedia:Fornix_(neuroanatomy)#Structure] synonym: "columna posterior fornicis" RELATED OMO:0003011 [NeuroNames:431] synonym: "fornix (entering Corpus mamillare)" EXACT OMO:0003011 [FMA:62062, FMA:TA] synonym: "fornix postcommissuralis" RELATED OMO:0003011 [NeuroNames:431] synonym: "POFX" BROAD OMO:0003000 [BIRNLEX:914, NIFSTD:NeuroNames_abbrevSource] synonym: "postcommissural fornix" EXACT [FMA:62062] xref: BAMS:fxpo xref: BAMS:pofx xref: BIRNLEX:914 xref: FMA:62062 xref: MBA:737 xref: neuronames:431 {source="BIRNLEX:914"} xref: UMLS:C0175340 {source="BIRNLEX:914"} is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0000052 ! fornix of brain relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0003017 name: substantia innominata namespace: uberon def: "A predominantly gray matter structure of the basal telencephalon defined on the basis of Nissl stain. Caudal to the anterior commissure it lies deep to the globus pallidus and dorsal to the amygdala. Rostral to the anterior commissure it lies deep to the striatum. The more rostral portion contains the basal forebrain nucleus ( Anthoney-1994 ). In the late twentieth century the region containing the substantia innominata was resegmented on the basis of neurochemistry and connectivity to constitute the striatopallidal system ( Heimer-1995 ). In this scheme the caudal portion of substantia innominata is located largely in the ventral pallidum and the rostral portion in the ventral striatum. (from Brain Info)." [BIRNLEX:915] subset: human_reference_atlas subset: uberon_slim synonym: "innominate substance" EXACT [FMA:61885] synonym: "nucleus of substantia innominata" EXACT [FMA:61885] synonym: "substantia innominata (Reil, Reichert)" RELATED [NeuroNames:274] synonym: "substantia innominata of Meynert" RELATED OMO:0003011 [NeuroNames:274] synonym: "substantia innominata of Reichert" RELATED [BTO:0002447] synonym: "substantia innominata of Reil" RELATED [BTO:0002447] synonym: "substriatal gray" RELATED [NeuroNames:274] xref: BAMS:SI xref: BIRNLEX:915 xref: BM:Tel-SI xref: BTO:0002447 xref: DHBA:13034 xref: FMA:61885 xref: GAID:638 xref: HBA:13003 xref: MBA:342 xref: MESH:D013377 xref: neuronames:274 {source="BIRNLEX:915"} xref: UMLS:C0038589 {source="BIRNLEX:915"} xref: Wikipedia:Substantia_innominata is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002743 {source="WP"} ! basal forebrain relationship: part_of UBERON:0002778 {source="ABA"} ! ventral pallidum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG" xsd:anyURI property_value: RO:0002171 UBERON:0007627 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003018 name: parvocellular part of ventral posteromedial nucleus namespace: uberon synonym: "gustatory nucleus (thalamus)" EXACT [BIRNLEX:917] synonym: "gustatory thalamic nucleus" EXACT [FMA:62207] synonym: "nucleus ventralis posterior medialis thalami, pars parvicellularis" EXACT [BIRNLEX:917] synonym: "nucleus ventralis posterior medialis, pars parvocellularis" RELATED OMO:0003011 [NeuroNames:349] synonym: "pars parvicellularis nuclei ventralis posteromedialis thalami" EXACT OMO:0003011 [FMA:62207, FMA:TA] synonym: "parvicellular part of the ventral posteromedial nucleus" RELATED [NeuroNames:349] synonym: "parvicellular part of ventral posteromedial nucleus" EXACT [] synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207] synonym: "thalamic gustatory area" RELATED [NeuroNames:349] synonym: "thalamic gustatory relay" RELATED [NeuroNames:349] synonym: "thalamic taste relay" RELATED [NeuroNames:349] synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207] synonym: "ventral posteromedial nucleus of the thalamus parvicellular part" RELATED [NeuroNames:349] synonym: "ventral posteromedial nucleus of the thalamus, parvicellular part" RELATED [BAMS:VPMpc] synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207] synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207] synonym: "ventroposterior medial thalamic nucleus, parvocellular part" RELATED [BAMS:VPMPC] synonym: "ventroposteromedial nucleus of the thalamus parvicellular part" RELATED [BAMS:VPMpc] synonym: "ventroposteromedial nucleus of the thalamus, parvicellular part" EXACT [BIRNLEX:917] synonym: "VPMPC" BROAD OMO:0003000 [BIRNLEX:917, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Gus xref: BAMS:VPMPC xref: BAMS:VPMpc xref: BIRNLEX:917 xref: DHBA:146034766 xref: FMA:62207 xref: MBA:741 xref: neuronames:349 {source="BIRNLEX:917"} xref: UMLS:C0175290 {source="BIRNLEX:917"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial nucleus of thalamus [Term] id: UBERON:0003019 name: oral part of ventral posterolateral nucleus namespace: uberon synonym: "nucleus lateralis intermedius lateralis" EXACT [BIRNLEX:918] synonym: "nucleus posteroventralis oralis" EXACT [BIRNLEX:918] synonym: "nucleus ventralis intermedius (dewulf)" EXACT [BIRNLEX:918] synonym: "nucleus ventralis intermedius (walker)" EXACT [BIRNLEX:918] synonym: "nucleus ventralis intermedius thalami" EXACT [BIRNLEX:918] synonym: "nucleus ventralis posterior lateralis, pars oralis" EXACT [BIRNLEX:918] synonym: "nucleus ventrointermedius" EXACT [BIRNLEX:918] synonym: "oral part of the ventral posterolateral nucleus" RELATED [NeuroNames:345] synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205] synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205] synonym: "ventrointermedius nucleus" RELATED [BAMS:VIM] synonym: "VPLO" BROAD OMO:0003000 [BIRNLEX:918, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VIM xref: BAMS:VPLO xref: BIRNLEX:918 xref: FMA:62205 xref: neuronames:345 {source="BIRNLEX:918"} xref: UMLS:C0175286 {source="BIRNLEX:918"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002942 {source="NIFSTD"} ! ventral posterolateral nucleus [Term] id: UBERON:0003020 name: subcallosal area namespace: uberon def: "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]." [Wikipedia:Subcallosal_area] subset: human_reference_atlas subset: uberon_slim synonym: "adolfactory area" EXACT [FMA:61890] synonym: "area paraolfactoria" EXACT OMO:0003011 [FMA:61890, FMA:TA] synonym: "area parolfactoria" RELATED OMO:0003011 [Wikipedia:Subcallosal_area] synonym: "area subcallosa" RELATED OMO:0003011 [Wikipedia:Subcallosal_area] synonym: "paraolfactory area" EXACT [FMA:61890] synonym: "parolfactory area" EXACT [FMA:61890] synonym: "Zuckerkandl's gyrus" RELATED [NeuroNames:278] xref: BAMS:SCA xref: BIRNLEX:919 xref: FMA:61890 xref: neuronames:278 {source="BIRNLEX:919"} xref: SCTID:362357004 xref: UMLS:C0228282 {source="BIRNLEX:919"} xref: Wikipedia:Subcallosal_area is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0001893 {source="NIFSTD"} ! telencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003021 name: central lobule namespace: uberon def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]." [Wikipedia:Central_lobule] subset: uberon_slim synonym: "central lobe of the cerebellum" RELATED [BAMS:CENT] synonym: "central lobule of cerebellum" EXACT [FMA:72519] synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519] synonym: "lobule II and III of vermis" RELATED [FMA:72519] synonym: "lobulus centralis" RELATED OMO:0003011 [Wikipedia:Central_lobule] synonym: "lobulus centralis cerebelli [ii et iii]" EXACT OMO:0003011 [FMA:72519, FMA:TA] xref: BAMS:CENT xref: BAMS:CLb xref: BIRNLEX:920 xref: FMA:72519 xref: MBA:920 xref: neuronames:658 xref: SCTID:279383007 xref: Wikipedia:Central_lobule is_a: UBERON:0004070 ! cerebellum vermis lobule relationship: part_of UBERON:0003941 {source="FMA"} ! cerebellum anterior vermis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray703.png" xsd:anyURI property_value: RO:0002171 UBERON:0004077 {source="ABA"} property_value: UBPROP:0000012 "Note in FMA this is classified as a hemispheric lobule, which leads to inconsistencies. In ABA it is vermic, and FMA actually places it in the anterior vermis." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0003023 name: pontine tegmentum namespace: uberon def: "Dorsal portion of the pons, containing cranial nervee nuclei, ascending and descending tracts and reticular nuclei. It is continuous with the reticular formation of the medulla (Carpenter, A Core Text of Neuroanatomy, 3rd ed, 1985, pg 133)." [BIRNLEX:923] subset: human_reference_atlas subset: uberon_slim synonym: "dorsal pons" EXACT [] synonym: "dorsal portion of pons" EXACT [FMA:71108] synonym: "pars dorsalis pontis" RELATED OMO:0003011 [NeuroNames:557] synonym: "pars posterior pontis" RELATED OMO:0003011 [NeuroNames:557] synonym: "tegmental portion of pons" EXACT [FMA:71108] synonym: "tegmentum of pons" EXACT [FMA:71108] synonym: "tegmentum pontis" EXACT OMO:0003011 [FMA:71108, FMA:TA] synonym: "tegmentum pontis" RELATED OMO:0003011 [Wikipedia:Pontine_tegmentum] xref: BAMS:PTg xref: BIRNLEX:923 xref: DHBA:12416 xref: FMA:71108 xref: HBA:9135 xref: MESH:D065821 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:557 {source="BIRNLEX:923"} xref: SCTID:362401009 xref: UMLS:C0228426 {source="BIRNLEX:923"} xref: Wikipedia:Pontine_tegmentum relationship: part_of UBERON:0000988 ! pons property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000009 "involved in the initiation of REM sleep [Wikipedia:Pontine_tegmentum]" xsd:string [Term] id: UBERON:0003024 name: principal part of ventral posteromedial nucleus namespace: uberon synonym: "nucleus ventralis posteromedialis, pars principalis" RELATED OMO:0003011 [NeuroNames:348] synonym: "nucleus ventralis posteromedialis, pars prinicipalis" EXACT [BIRNLEX:927] synonym: "principal part of the ventral posteromedial nucleus" RELATED [NeuroNames:348] synonym: "ventral posteromedial nucleus, principal part" RELATED [NeuroNames:348] synonym: "VPMPr" BROAD OMO:0003000 [BIRNLEX:927, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:VPMPr xref: BIRNLEX:927 xref: FMA:62208 xref: neuronames:348 {source="BIRNLEX:927"} xref: UMLS:C0175289 {source="BIRNLEX:927"} is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial nucleus of thalamus [Term] id: UBERON:0003025 name: brachium of inferior colliculus namespace: uberon def: "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]." [Wikipedia:Brachium_of_inferior_colliculus] subset: uberon_slim synonym: "brachium colliculi caudalis" RELATED OMO:0003011 [NeuroNames:480] synonym: "brachium colliculi inferioris" RELATED OMO:0003011 [Wikipedia:Brachium_of_inferior_colliculus] synonym: "brachium of medial geniculate" EXACT [FMA:71114] synonym: "brachium of the inferior colliculus" RELATED [NeuroNames:480] synonym: "brachium quadrigeminum inferius" RELATED OMO:0003011 [NeuroNames:480] synonym: "inferior brachium" EXACT [FMA:71114] synonym: "inferior collicular brachium" EXACT [FMA:71114] synonym: "inferior colliculus brachium" EXACT [FMA:71114] synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114] synonym: "nucleus of the brachium of the inferior colliculus" RELATED [BAMS:BIC] synonym: "peduncle of inferior colliculus" EXACT [FMA:71114] xref: BAMS:BIC xref: BAMS:bic xref: BIRNLEX:929 xref: BM:MB-BSC xref: DHBA:12327 xref: DMBA:17753 xref: FMA:71114 xref: HBA:265505386 xref: MBA:482 xref: neuronames:480 {source="BIRNLEX:929"} xref: UMLS:C0175372 {source="BIRNLEX:929"} xref: Wikipedia:Brachium_of_inferior_colliculus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001946 ! inferior colliculus relationship: part_of UBERON:0002316 ! white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG" xsd:anyURI [Term] id: UBERON:0003026 name: limitans nucleus namespace: uberon synonym: "Lim" BROAD OMO:0003000 [BIRNLEX:931, NIFSTD:NeuroNames_abbrevSource] synonym: "limitans thalamic nucleus" EXACT [BIRNLEX:931] synonym: "nucleus limitans" EXACT [BIRNLEX:931] synonym: "nucleus limitans opticus (Hassler)" EXACT [BIRNLEX:931] synonym: "nucleus limitans thalami" EXACT [BIRNLEX:931] xref: BAMS:Lim xref: BIRNLEX:931 xref: BM:Die-Th-L xref: DHBA:13043 xref: FMA:62220 xref: HBA:4429 xref: neuronames:361 {source="BIRNLEX:931"} xref: SCTID:369181002 xref: UMLS:C0175299 {source="BIRNLEX:931"} is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003027 name: cingulate cortex namespace: uberon def: "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]." [Wikipedia:Cingulate_cortex] subset: efo_slim subset: uberon_slim synonym: "cingulate neocortex" EXACT [DHBA:10277] synonym: "gyrus cingulatus" RELATED OMO:0003011 [Wikipedia:Cingulate_cortex] synonym: "gyrus cinguli" RELATED OMO:0003004 [] xref: BIRNLEX:934 xref: BM:Tel-Cx-Cg xref: BTO:0003975 xref: DHBA:10277 xref: DMBA:16072 xref: EFO:0000343 xref: EMAPA:35242 xref: MA:0000904 xref: NCIT:C52713 xref: UMLS:C0598179 {source="ncithesaurus:Cingulate_Cortex", source="BIRNLEX:934"} xref: Wikipedia:Cingulate_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016542 {source="NIFSTD", source="cjm"} ! limbic cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png" xsd:anyURI [Term] id: UBERON:0003028 name: commissure of inferior colliculus namespace: uberon def: "A commissure that is part of a inferior colliculus [Automatically generated definition]." [OBOL:automatic] synonym: "caudal colliculus commissure" EXACT [OBOL:automatic] synonym: "commissura colliculi inferioris" RELATED OMO:0003011 [NeuroNames:481] synonym: "commissura colliculorum caudalium" RELATED OMO:0003011 [NeuroNames:481] synonym: "commissura colliculorum inferiorum" RELATED OMO:0003011 [NeuroNames:481] synonym: "commissure of caudal colliculus" EXACT [OBOL:automatic] synonym: "commissure of inferior colliculi" EXACT [FMA:71115] synonym: "commissure of posterior colliculus" EXACT [OBOL:automatic] synonym: "commissure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "commissure of the inferior colliculi" RELATED [BAMS:cic, BAMS:ICG, BAMS:IGO] synonym: "commissure of the inferior colliculus" RELATED [NeuroNames:481] synonym: "inferior collicular commissure" EXACT [FMA:71115] synonym: "inferior colliculus commissure" EXACT [FMA:71115] synonym: "posterior colliculus commissure" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] xref: BAMS:cic xref: BAMS:ICG xref: BAMS:IGO xref: BIRNLEX:935 xref: DHBA:12333 xref: FMA:71115 xref: HBA:265505434 xref: MBA:633 xref: neuronames:481 {source="BIRNLEX:935"} xref: SCTID:369260005 xref: UMLS:C0152367 {source="BIRNLEX:935"} is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0003029 name: stria terminalis namespace: uberon def: "White matter structure in the brain consisting of fibers running along the lateral margin of the ventricular surface of the thalamus. The stria terminalis covers the thalamostriate vein, marking a line of separation between the thalamus and the caudate nucleus as seen upon gross dissection of the ventricles of the brain, viewed from the superior aspect. The stria terminalis extends from the region of the interventricular foramen to the temporal horn of the lateral ventricle, carrying fibers from the amygdala to the septal, hypothalamic, and thalamic areas of the brain. It also carries fibers projecting from these areas back to the amygdala. (Wikipedia:Stria_terminalis)." [BIRNLEX:937] subset: uberon_slim synonym: "fibrae striae terminalis" RELATED OMO:0003011 [NeuroNames:286] synonym: "fovilles fasciculus" RELATED [BTO:0004616] synonym: "semicircular stria" EXACT [FMA:61974] synonym: "stria semicircularis" RELATED OMO:0003011 [NeuroNames:286] synonym: "stria terminalis" RELATED OMO:0003011 [Wikipedia:Stria_terminalis] synonym: "stria terminalis (Wenzel-Wenzel)" RELATED [NeuroNames:286] synonym: "Tarins tenia" RELATED [BTO:0004616] synonym: "tenia semicircularis" RELATED [BTO:0004616] synonym: "terminal stria" EXACT [Wikipedia:Terminal_stria] xref: BAMS:st xref: BAMS:STR xref: BIRNLEX:937 xref: BM:ST xref: BM:STr xref: BTO:0004616 xref: DHBA:10591 xref: FMA:61974 xref: HBA:9278 xref: MBA:301 xref: neuronames:286 {source="BIRNLEX:937"} xref: UMLS:C0175243 {source="BIRNLEX:937"} xref: Wikipedia:Stria_terminalis is_a: UBERON:0002437 ! cerebral hemisphere white matter is_a: UBERON:0016555 ! stria of telencephalon relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray683.png" xsd:anyURI [Term] id: UBERON:0003030 name: posterior nucleus of thalamus namespace: uberon subset: vertebrate_core synonym: "caudal thalamic nucleus" RELATED [TAO:0000325] synonym: "nucleus posterior thalami" EXACT [BIRNLEX:939] synonym: "nucleus thalami posterior" EXACT OMO:0003011 [FMA:62221, FMA:TA] synonym: "posterior nucleus of the thalamus" RELATED [NeuroNames:362] synonym: "PTh" BROAD OMO:0003000 [BIRNLEX:939, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PTh xref: BIRNLEX:939 xref: BM:Die-Th-Po xref: DHBA:10440 xref: FMA:62221 xref: HBA:4431 xref: NCIT:C33370 xref: neuronames:362 {source="BIRNLEX:939"} xref: SCTID:424901000 xref: TAO:0000325 xref: UMLS:C0262315 {source="BIRNLEX:939", source="ncithesaurus:Posterior_Nucleus_of_the_Thalamus"} xref: ZFA:0000325 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002709 {source="FMA", source="NIFSTD"} ! posterior nuclear complex of thalamus [Term] id: UBERON:0003031 name: submedial nucleus of thalamus namespace: uberon def: "Thalamic nucleus separated from the ventromedial part of the mediodorsal nucleus of the thalamus by the internal medullary lamina (Paxinos The rat nervous system 2nd ed, Academic Press, 1995)." [BIRNLEX:946] synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223] synonym: "nucleus submedialis thalami" EXACT OMO:0003011 [FMA:62223, FMA:TA] synonym: "nucleus submedius thalami" EXACT [BIRNLEX:946] synonym: "SM" BROAD OMO:0003000 [BIRNLEX:946, NIFSTD:NeuroNames_abbrevSource] synonym: "submedial nucleus" EXACT [FMA:62223] synonym: "submedial nucleus of thalamus" EXACT [FMA:62223] synonym: "submedial nucleus of the thalamus" RELATED [NeuroNames:364] synonym: "submedial nucleus thalamus" EXACT [BIRNLEX:946] synonym: "submedial thalamic nucleus" EXACT [BIRNLEX:946] synonym: "submedius thalamic nucleus" RELATED [NeuroNames:364] xref: BAMS:SMT xref: BIRNLEX:946 xref: DMBA:16426 xref: EV:0100203 xref: FMA:62223 xref: HBA:4406 xref: MBA:366 xref: neuronames:364 {source="BIRNLEX:946"} xref: SCTID:279151007 xref: UMLS:C0175301 {source="BIRNLEX:946"} is_a: UBERON:0003030 ! posterior nucleus of thalamus relationship: part_of UBERON:0002709 {source="FMA"} ! posterior nuclear complex of thalamus property_value: RO:0002171 UBERON:0002739 {source="ABA"} [Term] id: UBERON:0003033 name: suprageniculate nucleus of thalamus namespace: uberon synonym: "nucleus suprageniculatus" EXACT [BIRNLEX:953] synonym: "SG" BROAD OMO:0003000 [BIRNLEX:953, NIFSTD:NeuroNames_abbrevSource] synonym: "suprageniculate nucleus" EXACT [FMA:62222] synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222] xref: BAMS:SGN xref: BAMS:SPGN xref: BIRNLEX:953 xref: BM:Die-Th-SG xref: DHBA:13044 xref: DMBA:16452 xref: FMA:62222 xref: HBA:4430 xref: MBA:325 xref: neuronames:363 {source="BIRNLEX:953"} xref: SCTID:369180001 xref: UMLS:C0152346 {source="BIRNLEX:953"} is_a: UBERON:0002308 ! nucleus of brain property_value: RO:0002171 UBERON:0002709 {source="ABA"} property_value: RO:0002171 UBERON:0002983 {source="ABA"} [Term] id: UBERON:0003034 name: central dorsal nucleus of thalamus namespace: uberon synonym: "CD" BROAD OMO:0003000 [BIRNLEX:956, NIFSTD:NeuroNames_abbrevSource] synonym: "central dorsal nucleus" EXACT [FMA:62169, http://uri.neuinfo.org/nif/nifstd/birnlex] synonym: "central dorsal nucleus of thalamus" EXACT [DHBA:13331] synonym: "circular nucleus" BROAD [NeuroNames:1853] synonym: "nucleus centralis dorsalis thalami" EXACT [BIRNLEX:956] synonym: "nucleus centralis superior lateralis" EXACT [BIRNLEX:956] synonym: "nucleus centralis superior lateralis thalami" EXACT [BIRNLEX:956] synonym: "nucleus circularis" RELATED INCONSISTENT [BIRNLEX:956] xref: BAMS:CD xref: BIRNLEX:956 xref: DHBA:13331 xref: EMAPA:35210 xref: FMA:62169 xref: neuronames:319 {source="BIRNLEX:956"} xref: UMLS:C0752053 {source="BIRNLEX:956"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002965 {source="FMA", source="NIFSTD"} ! rostral intralaminar nuclear group [Term] id: UBERON:0003036 name: central lateral nucleus namespace: uberon synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170] synonym: "central lateral nucleus of the thalamus" RELATED [NeuroNames:320] synonym: "central lateral thalamic nucleus" EXACT [FMA:62170] synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170] synonym: "CL" BROAD OMO:0003000 [BIRNLEX:961, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus centralis lateralis of thalamus" EXACT [BIRNLEX:961] synonym: "nucleus centralis lateralis thalami" EXACT [BIRNLEX:961] xref: BAMS:CL xref: BAMS:CLN xref: BIRNLEX:961 xref: BM:Die-CL xref: DHBA:10444 xref: DMBA:16418 xref: EMAPA:35205 xref: EV:0100205 xref: FMA:62170 xref: HBA:4434 xref: MBA:575 xref: neuronames:320 {source="BIRNLEX:961"} xref: SCTID:279153005 xref: UMLS:C0228355 {source="BIRNLEX:961"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group property_value: RO:0002171 UBERON:0001922 {source="ABA"} property_value: RO:0002171 UBERON:0001923 {source="ABA"} property_value: RO:0002171 UBERON:0001924 {source="ABA"} property_value: RO:0002171 UBERON:0002955 {source="ABA"} [Term] id: UBERON:0003038 name: thoracic spinal cord namespace: uberon def: "The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]." [Wikipedia:Thoracic_spinal_cord] subset: human_reference_atlas subset: uberon_slim synonym: "pars thoracica medullae spinalis" EXACT OMO:0003011 [FMA:71167, FMA:TA] synonym: "segmenta thoracica medullae spinalis [1-12]" EXACT OMO:0003011 [FMA:71167, FMA:TA] synonym: "thoracic region of spinal cord" EXACT [FMA:71167] synonym: "thoracic segment of spinal cord" EXACT [FMA:71167] synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167] synonym: "thoracic spinal cord" EXACT [FMA:71167] xref: BIRNLEX:966 xref: FMA:71167 xref: MA:0003082 xref: NCIT:C12894 xref: neuronames:1718 xref: SCTID:278750009 xref: UMLS:C0581620 {source="ncithesaurus:Thoracic_Spinal_Cord", source="BIRNLEX:966"} xref: Wikipedia:Thoracic_spinal_cord is_a: UBERON:0005844 ! spinal cord segment property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray820.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003039 name: anterior commissure anterior part namespace: uberon def: "The horseshoe-shaped tract that connects the two olfactory bulbs." [MP:0010859] subset: pheno_slim synonym: "anterior commissure olfactory limb" RELATED [BAMS:aco] synonym: "anterior commissure pars anterior" EXACT [MP:0010859] synonym: "anterior commissure, anterior part" EXACT [FMA:61963] synonym: "anterior commissure, olfactory limb" RELATED [BAMS:aco] synonym: "anterior part of anterior commissure" EXACT [FMA:61963, MP:0008230] synonym: "commissura anterior, crus anterius" EXACT OMO:0003011 [FMA:61963, FMA:TA] synonym: "commissura anterior, pars anterior" EXACT OMO:0003011 [FMA:61963, FMA:TA] synonym: "commissura anterior, pars olfactoria" EXACT OMO:0003011 [FMA:61963, FMA:TA] synonym: "commissura rostralis, pars anterior" EXACT OMO:0003011 [FMA:61963, FMA:TA] synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963] synonym: "olfactory part of anterior commissure" EXACT [FMA:61963] synonym: "pars anterior" BROAD [MP:0008230] synonym: "pars anterior commissurae anterioris" EXACT [MP:0008230] synonym: "pars olfactoria commissurae anterioris" EXACT OMO:0003011 [FMA:61963, FMA:TA] xref: BAMS:aca xref: BAMS:aco xref: BIRNLEX:969 xref: EMAPA:37404 {source="MA:th"} xref: FMA:61963 xref: MBA:900 xref: neuronames:206 is_a: UBERON:0019294 ! commissure of telencephalon relationship: part_of UBERON:0000935 ! anterior commissure [Term] id: UBERON:0003040 name: central gray substance of midbrain namespace: uberon def: "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]." [http://sourceforge.net/p/obo/mouse-anatomy-requests/40/, Wikipedia:Periaqueductal_gray] subset: efo_slim subset: human_reference_atlas subset: uberon_slim subset: vertebrate_core synonym: "anulus aquaeductus" RELATED OMO:0003011 [NeuroNames:510] synonym: "anulus aqueductus cerebri" RELATED OMO:0003011 [NeuroNames:510] synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510] synonym: "central (periaqueductal) gray" EXACT [FMA:74510] synonym: "central gray" RELATED [BAMS:PAG] synonym: "central gray of the midbrain" RELATED [NeuroNames:510] synonym: "central gray substance of the midbrain" RELATED [NeuroNames:510] synonym: "central grey" RELATED [MA:0000209] synonym: "central grey substance of midbrain" RELATED [NeuroNames:510] synonym: "CGMB" BROAD OMO:0003000 [BIRNLEX:973, NIFSTD:NeuroNames_abbrevSource] synonym: "griseum centrale" BROAD [BIRNLEX:973] synonym: "griseum centrale mesencephali" RELATED OMO:0003011 [NeuroNames:510] synonym: "griseum periventriculare mesencephali" RELATED OMO:0003011 [NeuroNames:510] synonym: "midbrain periaqueductal grey" EXACT [MA:0000209] synonym: "pAG" RELATED [NeuroNames:510] synonym: "periaquectuctal grey" RELATED OMO:0003002 [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895] synonym: "periaqueductal gray" EXACT [FMA:74510] synonym: "periaqueductal gray matter" EXACT [FMA:74510] synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510] synonym: "periaqueductal gray, proper" RELATED [BAMS:PAG] synonym: "periaqueductal grey" EXACT [MA:0002895] synonym: "periaqueductal grey matter" EXACT [EV:0100249] synonym: "periaqueductal grey substance" EXACT [FMA:74510] synonym: "s. grisea centralis" RELATED OMO:0003011 [Wikipedia:Periaqueductal_gray] synonym: "substantia grisea centralis" BROAD [BIRNLEX:973] synonym: "substantia grisea centralis mesencephali" RELATED OMO:0003011 [NeuroNames:510] xref: BAMS:CGMB xref: BAMS:PAG xref: BIRNLEX:973 xref: BM:MB-PAG xref: BTO:0002701 xref: DHBA:12209 xref: EFO:0002470 xref: EMAPA:32781 xref: EV:0100249 xref: FMA:74510 xref: GAID:585 xref: HBA:9003 xref: MA:0000209 xref: MA:0002895 xref: MBA:795 xref: MESH:D010487 xref: neuronames:510 {source="BIRNLEX:973"} xref: SCTID:369233003 xref: TAO:0000518 xref: UMLS:C0228398 {source="BIRNLEX:973"} xref: Wikipedia:Periaqueductal_gray xref: ZFA:0000518 is_a: UBERON:0019267 ! gray matter of midbrain is_a: UBERON:0035011 ! central gray substance relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI property_value: RO:0002171 UBERON:0001715 {source="ABA"} property_value: RO:0002171 UBERON:0001944 {source="ABA"} property_value: RO:0002171 UBERON:0001947 {source="ABA"} property_value: RO:0002171 UBERON:0001966 {source="ABA"} property_value: RO:0002171 UBERON:0002141 {source="ABA"} property_value: RO:0002171 UBERON:0002438 {source="ABA"} property_value: RO:0002171 UBERON:0002691 {source="ABA"} property_value: RO:0002171 UBERON:0002696 {source="ABA"} property_value: RO:0002171 UBERON:0002722 {source="ABA"} property_value: RO:0002171 UBERON:0002995 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003041 name: trigeminal nerve fibers namespace: uberon def: "A nerve fiber that is part of a trigeminal nerve." [OBOL:automatic] synonym: "central part of trigeminal nerve" EXACT [FMA:72501] synonym: "fibrae nervi trigemini" RELATED OMO:0003011 [NeuroNames:607] synonym: "trigeminal nerve fibers" EXACT [FMA:72501] synonym: "trigeminal nerve tract" EXACT [FMA:72501] xref: BAMS:5nf xref: BIRNLEX:974 xref: FMA:72501 xref: neuronames:607 {source="BIRNLEX:974"} xref: UMLS:C0175452 {source="BIRNLEX:974"} is_a: UBERON:0006134 ! nerve fiber relationship: part_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0003043 name: posterior part of anterior commissure namespace: uberon def: "The major forebrain commissure that connects the two temporal lobes of the cortex." [MP:0010860] subset: pheno_slim synonym: "anterior commissure pars posterior" EXACT [MP:0010860] synonym: "anterior commissure temporal limb" EXACT [MP:0008230] synonym: "anterior commissure, posterior part" EXACT [FMA:61964] synonym: "anterior commissure, temporal limb" RELATED [BAMS:act] synonym: "commissura anterior, crus posterius" EXACT OMO:0003011 [FMA:61964, FMA:TA] synonym: "commissura anterior, pars posterior" EXACT OMO:0003011 [FMA:61964, FMA:TA] synonym: "commissura rostralis, pars posterior" EXACT OMO:0003011 [FMA:61964, FMA:TA] synonym: "pars posterior" BROAD [MP:0008229] synonym: "pars posterior commissurae anterioris" EXACT OMO:0003011 [FMA:61964, FMA:TA] synonym: "temporal limb of anterior commissure" EXACT [FMA:61964] xref: BAMS:acp xref: BAMS:act xref: BIRNLEX:977 xref: EMAPA:37410 {source="MA:th"} xref: FMA:61964 xref: MBA:908 xref: neuronames:207 xref: UMLS:C0175210 {source="BIRNLEX:977"} is_a: UBERON:0019294 ! commissure of telencephalon relationship: part_of UBERON:0000935 ! anterior commissure [Term] id: UBERON:0003044 name: uncinate fasciculus namespace: uberon def: "Pathway arising from the fastigial nucleus to the vestibular nuclei, reticular formation, motor neurons of brainstem and cervical spinal cord (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 261)." [BIRNLEX:983] subset: uberon_slim synonym: "cerebellospinal tract" RELATED [NeuroNames:597] synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636] synonym: "fasciculus fastigio-vestibularis" RELATED OMO:0003011 [NeuroNames:597] synonym: "fastigiobulbar tract" RELATED [NeuroNames:597] synonym: "hook bundle of Russell" RELATED [NeuroNames:597] synonym: "russell's fasciculus" RELATED OMO:0003011 [NeuroNames:597] synonym: "tractus cerebello-bulbaris" RELATED OMO:0003011 [NeuroNames:597] synonym: "tractus uncinatus" RELATED OMO:0003011 [NeuroNames:597] synonym: "tractus uncinatus (Lewandowsky)" RELATED OMO:0003011 [NeuroNames:597] synonym: "uncinate bundle of Russell" RELATED [NeuroNames:597] synonym: "uncinate fascicle (Russell)" RELATED [NeuroNames:597] synonym: "uncinate fasciculus of cerebellum" RELATED [NeuroNames:597] synonym: "uncinate fasciculus of pons" RELATED [BAMS:unc] synonym: "uncinate fasciculus of Russell" RELATED [NeuroNames:597] synonym: "uncinate fasciculus of the pons" RELATED [NeuroNames:597] synonym: "uncinate fasciculus-2" RELATED [NeuroNames:597] xref: BAMS:unc xref: BIRNLEX:983 xref: DHBA:10594 xref: FMA:77636 xref: MESH:D000083382 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:597 {source="BIRNLEX:983"} xref: SCTID:369083001 xref: UMLS:C0228271 {source="BIRNLEX:983"} xref: Wikipedia:Uncinate_fasciculus is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray751.png" xsd:anyURI [Term] id: UBERON:0003045 name: dorsal longitudinal fasciculus namespace: uberon def: "A fiber bundle containing fibers from nuclei of the hypothalamus that project to the dorsal tegmental nucleus and other regions of the midbrain and the pons, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to the thalamus and other regions of the forebrain (Carpenter-83). In NeuroNames it is a composite structure consisting of the dorsal longitudinal fasciculus of hypothalamus, the dorsal longitudinal fasciculus of midbrain, the dorsal longitudinal fasciculus of pons and the dorsal longitudinal fasciculus of medulla. (NeuroNames)." [BIRNLEX:986] subset: uberon_slim subset: vertebrate_core synonym: "accessory cochlear nucleus" RELATED [NeuroNames:722] synonym: "bundle of Schutz" EXACT [FMA:83845] synonym: "DLF" RELATED [ZFA:0005266] synonym: "dorsal longitudinal fascicle" RELATED [BAMS:dlf] synonym: "fasciculus longitudinalis dorsalis" RELATED OMO:0003011 [Wikipedia:Dorsal_longitudinal_fasciculus] synonym: "fasciculus longitudinalis posterior" EXACT OMO:0003011 [FMA:83845, FMA:TA] synonym: "fasciculus longitudinalis posterior" RELATED OMO:0003011 [Wikipedia:Dorsal_longitudinal_fasciculus] synonym: "fasciculus of Schutz" EXACT [FMA:83845] synonym: "nucleus acustici accessorici" RELATED OMO:0003011 [NeuroNames:722] synonym: "nucleus cochlearis anterior" RELATED OMO:0003011 [NeuroNames:722] synonym: "nucleus cochlearis ventralis" RELATED OMO:0003011 [NeuroNames:722] synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845] synonym: "ventral cochlear nuclei" RELATED [NeuroNames:722] synonym: "ventral division of cochlear nucleus" RELATED [NeuroNames:722] xref: BAMS:dlf xref: BAMS:VCo xref: BIRNLEX:986 xref: DHBA:12035 xref: FMA:83845 xref: HBA:9348 xref: MBA:547 xref: neuronames:722 {source="BIRNLEX:986"} xref: Wikipedia:Dorsal_longitudinal_fasciculus xref: ZFA:0005266 is_a: UBERON:0005838 ! fasciculus of brain [Term] id: UBERON:0003046 name: ventral acoustic stria namespace: uberon def: "White matter structure containing fibers arising from neurons in the cochlear nuclear complex." [BIRNLEX:991] synonym: "anterior acoustic stria" EXACT [FMA:72498] synonym: "stria cochlearis anterior" EXACT OMO:0003011 [FMA:72498, FMA:TA] synonym: "striae acusticae ventralis" RELATED OMO:0003011 [NeuroNames:604] xref: BAMS:vas xref: BIRNLEX:991 xref: FMA:72498 xref: neuronames:604 {source="BIRNLEX:991"} xref: UMLS:C0175456 {source="BIRNLEX:991"} is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis is_a: UBERON:0019293 ! white matter of pontine tegmentum relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0003052 name: midbrain-hindbrain boundary namespace: uberon def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "isthmic organizer territory" RELATED [XAO:0000016] synonym: "isthmo-cerebellar region" RELATED [VHOG:0000649] synonym: "isthmus" RELATED [] synonym: "isthmus/MHB" RELATED [Geisha:syn, NCBITaxon:8782] synonym: "MHB" EXACT [] synonym: "mid-hindbrain boundary" EXACT [] synonym: "mid-hindbrain junction" EXACT [] synonym: "midbrain hindbrain boundary" EXACT [] xref: AAO:0011064 xref: DMBA:16810 xref: EHDAA2:0004395 xref: EHDAA:5789 xref: EMAPA:32857 xref: NCIT:C93172 xref: neuronames:2076 xref: TAO:0000042 xref: VHOG:0000649 xref: XAO:0000016 xref: ZFA:0000042 relationship: part_of UBERON:0000955 {source="ZFA"} ! brain property_value: IAO:0000116 "consider adding class for organizer. Consider adding separate class for isthmus as a structure" xsd:string property_value: UBPROP:0000003 "Lampreys also have an MHB [midbrain hindbrain boundary], expressing a similar repertoire of regulatory gene cognates as in gnathostomes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000649", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.008 Murakami Y, Uchida K, Rijli FM and Kuratani S, Evolution of the brain developmental plan: Insights from agnathans. Developmental Biology (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003053 name: ventricular zone namespace: uberon def: "Proliferative region that is part of the ventricular system." [ZFA:0001083] subset: efo_slim subset: vertebrate_core synonym: "brain ventricular zone" EXACT [MA:0000819] synonym: "ventricular zone of brain" EXACT [] synonym: "ventricular zones" RELATED OMO:0003004 [ZFA:0001083] synonym: "VZ" EXACT [] xref: AAO:0011112 xref: BTO:0003654 xref: DHBA:10542 xref: EFO:0003624 xref: EMAPA:32679 xref: MA:0000819 xref: PBA:294022030 xref: TAO:0001083 xref: VHOG:0001224 xref: XAO:0000021 xref: ZFA:0001083 relationship: part_of UBERON:0000955 {source="MA"} ! brain relationship: part_of UBERON:0005281 {source="ZFA"} ! ventricular system of central nervous system property_value: UBPROP:0000001 "Proliferative zone in the region of the neural tube adjacent to the lumen." xsd:string {source="http://www.dartmouth.edu/~rswenson/NeuroSci/chapter_4.html"} property_value: UBPROP:0000001 "There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons[BTO:0003654]." xsd:string {source="BTO:0003654"} property_value: UBPROP:0000012 "in BTO this is restricted to the 4th ventricle - however this class also represents the early ventricular zone as well as its post-natal remnants. The MA class is named 'ventricular zone of brain' and is presumably restricted to the post-natal zone; DHBA class is forebrain; PBA class is neocortex; TAO/ZFA is neocortex" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0003065 name: ciliary marginal zone namespace: uberon def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005]." [ZFIN:curator] subset: efo_slim subset: uberon_slim synonym: "circumferential germinal zone" RELATED [] synonym: "CMZ" RELATED [] synonym: "peripheral growth zone" EXACT [ZFA:0001289] synonym: "retinal ciliary marginal zone" EXACT [ZFA:0001289] synonym: "retinal proliferative zone" RELATED [ZFA:0001289] xref: AAO:0010342 xref: EFO:0003668 xref: TAO:0001289 xref: VHOG:0000088 xref: XAO:0000086 xref: ZFA:0001289 relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000001 "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001289", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The retina of all vertebrates develops via similar mechanisms. Toward the end of retinal histogenesis, proliferating progenitors and newly generated cells are confined to peripheral regions of the retina. In fish and amphibians, this region is maintained after embryonic development and becomes the CMZ (ciliary margin zone). A CMZ exists in birds but compared to that of fish and amphibians this region produces much less new retina as the globe of the eye expands postnatally. At least some of the molecular mechanisms that regulate the addition of new cells in this zone appear to have been conserved from fish to birds.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000088", ontology="VHOG", source="DOI:10.1159/000057571 Reh TA, Fischer AJ, Stem cells in the vertebrate retina. Brain Behav Evol (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003078 name: epibranchial placode namespace: uberon def: "Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia." [VHOG:0000117] subset: efo_slim synonym: "epibranchial placodes" EXACT OMO:0003004 [ZFA:0001294] synonym: "ventrolateral placode" RELATED [ISBN:0471888893] xref: AAO:0011036 xref: EFO:0003455 xref: FMA:293968 xref: TAO:0001294 xref: VHOG:0000117 xref: XAO:0000284 xref: ZFA:0001294 relationship: part_of UBERON:0000010 {source="ZFA"} ! peripheral nervous system property_value: UBPROP:0000001 "Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia. [Graham_A, The_development_and_evolution_of_the_pharyngeal_arches._J_Anat_(2001)_199:_133-141][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000117", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000117", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A, The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000011 "Epibranchial placodes-derived neurons innervate internal organs to transmit information such as heart rate, blood pressure, and visceral distension from the periphery to the central nervous system (Baker and Bronner-Fraser, 2001). From rostral to caudal the epibranchial placodes comprise the geniculate, petrosal, and nodose placodes, each associated in sequence with the first, second and third branchial clefts. Each placode contributes sensory neurons to cranial nerves VII (facial nerve), IX (glossopharyngeal nerve), and X (vagal nerve), respectively" xsd:string {source="NCBIBook:NBK53175"} property_value: UBPROP:0000012 "in XAO this develops_from dorsolateral placode, but in NBK53175, this is a separate group" xsd:string {external_ontology="XAO"} [Term] id: UBERON:0003098 name: optic stalk namespace: uberon def: "The narrow, proximal portion of the optic vesicle which connects the embryonic eye and forebrain." [ISBN:0-914294-08-3, MP:0004268] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "optic stalks" RELATED OMO:0003004 [ZFA:0000137] synonym: "pedunculus opticus" RELATED OMO:0003011 [Wikipedia:Optic_stalk] xref: AAO:0011077 xref: EHDAA2:0001318 xref: EHDAA:3816 xref: EMAPA:16678 xref: NCIT:C34235 xref: SCTID:308788004 xref: TAO:0000137 xref: UMLS:C0231107 {source="ncithesaurus:Optic_Stalk"} xref: VHOG:0000223 xref: Wikipedia:Optic_stalk xref: XAO:0000475 xref: ZFA:0000137 is_a: UBERON:0034705 {source="EHDAA2"} ! developing neuroepithelium relationship: part_of UBERON:0001894 ! diencephalon property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png" xsd:anyURI property_value: UBPROP:0000001 "The evagination from the neural tube of the developing embryo which develops the optic cup at its extremity; the stalk persists as the optic nerve. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000223", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/optic+stalk"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000223", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003161 name: dorsal ocellus namespace: uberon def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli] synonym: "dorsal ocelli" RELATED OMO:0003004 [] synonym: "ocelli" RELATED OMO:0003004 [] synonym: "ocellus" EXACT [] xref: BTO:0001758 xref: FBbt:00004505 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000661 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0000963 ! head sensillum [Term] id: UBERON:0003162 name: lateral ocellus namespace: uberon def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli] xref: FBbt:00004506 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000481 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003209 name: blood nerve barrier namespace: uberon def: "Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] xref: MESH:D049428 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Blood-nerve_barrier relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003210 name: blood-cerebrospinal fluid barrier namespace: uberon def: "Barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088] subset: pheno_slim synonym: "blood-CSF barrier" EXACT [MP:0006088] relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0003212 name: gustatory organ namespace: uberon def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] synonym: "gustatory organ system organ" EXACT [OBOL:automatic] synonym: "gustatory system organ" EXACT [OBOL:automatic] synonym: "organ of gustatory organ system" EXACT [OBOL:automatic] synonym: "organ of gustatory system" EXACT [OBOL:automatic] synonym: "organ of taste system" EXACT [OBOL:automatic] synonym: "taste organ" EXACT [] synonym: "taste system organ" EXACT [OBOL:automatic] xref: FBbt:00005159 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:77853 is_a: UBERON:0000005 ! chemosensory organ [Term] id: UBERON:0003217 name: neural lobe of neurohypophysis namespace: uberon def: "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]." [Wikipedia:Neurohypophysis#cite_note-1] subset: pheno_slim subset: uberon_slim synonym: "caudal lobe" RELATED [BTO:0000561] synonym: "eminentia medialis (Shantha)" RELATED OMO:0003011 [NeuroNames:402] synonym: "eminentia mediana" RELATED OMO:0003011 [NeuroNames:402] synonym: "eminentia postinfundibularis" RELATED OMO:0003011 [NeuroNames:402] synonym: "lobe caudalis cerebelli" RELATED [BTO:0000561] synonym: "lobus nervosus (Neurohypophysis)" EXACT OMO:0003011 [FMA:74636, FMA:TA] synonym: "medial eminence" RELATED [NeuroNames:402] synonym: "middle lobe" RELATED [BTO:0000561] synonym: "neural component of pituitary" RELATED [] synonym: "pars nervosa" RELATED [MA:0000860] synonym: "pars nervosa (hypophysis)" EXACT OMO:0003011 [FMA:74636, FMA:TA] synonym: "pars nervosa (neurohypophysis)" EXACT OMO:0003011 [FMA:74636, FMA:TA] synonym: "pars nervosa neurohypophysis" EXACT OMO:0003011 [FMA:74636, FMA:TA] synonym: "pars nervosa of hypophysis" EXACT [] synonym: "pars nervosa of neurohypophysis" EXACT [] synonym: "pars nervosa of pituitary" EXACT [] synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT [] synonym: "pars nervosa pituitary gland" EXACT [BIRNLEX:941] synonym: "pars posterior" EXACT [MA:0000860] synonym: "pars posterior of hypophysis" EXACT OMO:0003011 [FMA:74636, FMA:TA] synonym: "PNHP" BROAD OMO:0003000 [BIRNLEX:941, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior lobe" BROAD [BTO:0000561] synonym: "posterior lobe of neurohypophysis" EXACT [FMA:74636] synonym: "posterior lobe-3" EXACT [] xref: BAMS:PNHP xref: BIRNLEX:941 xref: BTO:0000561 xref: EHDAA2:0001418 xref: EHDAA:7542 xref: EMAPA:35595 xref: FMA:74636 xref: MA:0000860 xref: neuronames:402 {source="BIRNLEX:941"} xref: SCTID:424523008 xref: UMLS:C0447640 {source="BIRNLEX:941"} xref: VHOG:0001180 xref: Wikipedia:Neurohypophysis#cite_note-1 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002198 ! neurohypophysis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG" xsd:anyURI property_value: IAO:0000116 "TODO - compare with UBERON:0002198" xsd:string property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001180", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003241 name: epithelium of utricle namespace: uberon def: "An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of utricle of membranous labyrinth" NARROW [FMA:75604] synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4730 xref: EMAPA:17295 xref: FMA:75604 xref: MA:0001204 xref: RETIRED_EHDAA2:0002155 xref: VHOG:0000634 is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth relationship: part_of UBERON:0002214 {source="FMA"} ! macula of utricle of membranous labyrinth property_value: IAO:0000116 "TODO - check relationships w.r.t macula" xsd:string [Term] id: UBERON:0003242 name: epithelium of saccule namespace: uberon def: "An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of saccule of membranous labyrinth" RELATED [FMA:75605] synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4724 xref: EMAPA:17292 xref: FMA:75605 xref: MA:0001202 xref: RETIRED_EHDAA2:0001771 xref: VHOG:0000633 is_a: UBERON:0006932 ! vestibular epithelium relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: IAO:0000116 "TODO - check relationships w.r.t macula" xsd:string [Term] id: UBERON:0003288 name: meninx of midbrain namespace: uberon def: "A meninx that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] synonym: "meninges of midbrain" EXACT OMO:0003004 [OBOL:automatic] synonym: "mesencephalon meninges" RELATED OMO:0003004 [VHOG:0000012] synonym: "midbrain meninges" EXACT OMO:0003004 [OBOL:automatic] synonym: "midbrain meninx" EXACT [OBOL:automatic] xref: EHDAA2:0001174 xref: EHDAA:3708 xref: EMAPA:17791 xref: MA:0001058 xref: RETIRED_EHDAA2:0001109 xref: VHOG:0000012 is_a: UBERON:0003547 ! brain meninx relationship: part_of UBERON:0001891 ! midbrain property_value: IAO:0000116 "consider changing genus to subdivision of meninx" xsd:string property_value: UBPROP:0000001 "Meninges that are part of the midbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000012", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000012", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003289 name: meninx of telencephalon namespace: uberon def: "A meninx that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "meninges of telencephalon" EXACT OMO:0003004 [OBOL:automatic] synonym: "telencephalon meninges" EXACT OMO:0003004 [OBOL:automatic] synonym: "telencephalon meninx" EXACT [OBOL:automatic] xref: EHDAA2:0001990 xref: EHDAA:5476 xref: EMAPA:17774 xref: MA:0000979 xref: VHOG:0000010 is_a: UBERON:0003548 ! forebrain meninges relationship: part_of UBERON:0001893 ! telencephalon property_value: IAO:0000116 "consider changing genus to subdivision of meninx" xsd:string property_value: UBPROP:0000001 "Meninges that are part of the telencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000010", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000010", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003290 name: meninx of diencephalon namespace: uberon def: "A meninx that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "between brain meninges" EXACT [OBOL:automatic] synonym: "between brain meninx" EXACT [OBOL:automatic] synonym: "diencephalon meninges" EXACT [OBOL:automatic] synonym: "diencephalon meninx" EXACT [OBOL:automatic] synonym: "interbrain meninges" EXACT [OBOL:automatic] synonym: "interbrain meninx" EXACT [OBOL:automatic] synonym: "mature diencephalon meninges" EXACT [OBOL:automatic] synonym: "mature diencephalon meninx" EXACT [OBOL:automatic] synonym: "meninges of between brain" EXACT [OBOL:automatic] synonym: "meninges of diencephalon" EXACT [OBOL:automatic] synonym: "meninges of interbrain" EXACT [OBOL:automatic] synonym: "meninges of mature diencephalon" EXACT [OBOL:automatic] synonym: "meninx of between brain" EXACT [OBOL:automatic] synonym: "meninx of interbrain" EXACT [OBOL:automatic] synonym: "meninx of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0000399 xref: EHDAA:5458 xref: EMAPA:17764 xref: MA:0000826 xref: VHOG:0000009 is_a: UBERON:0003548 ! forebrain meninges relationship: part_of UBERON:0001894 ! diencephalon property_value: IAO:0000116 "consider changing genus to subdivision of meninx" xsd:string property_value: UBPROP:0000001 "Meninges that are part of the diencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000009", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000009", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003291 name: meninx of hindbrain namespace: uberon def: "A meninx that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] synonym: "hindbrain meninges" EXACT [OBOL:automatic] synonym: "hindbrain meninx" EXACT [OBOL:automatic] synonym: "meninges of hindbrain" EXACT [OBOL:automatic] synonym: "rhomencephalon meninges" RELATED OMO:0003004 [VHOG:0000011] xref: EHDAA2:0000770 xref: EHDAA:3688 xref: EMAPA:17783 xref: MA:0000987 xref: VHOG:0000011 is_a: UBERON:0003547 ! brain meninx relationship: part_of UBERON:0002028 ! hindbrain property_value: IAO:0000116 "consider changing genus to subdivision of meninx" xsd:string property_value: UBPROP:0000001 "Meninges that are part of the hindbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000011", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000011", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003292 name: meninx of spinal cord namespace: uberon def: "A meninx that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "menines of spinal cord" EXACT OMO:0003004 [] synonym: "meninges of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord meninges" EXACT [OBOL:automatic] synonym: "spinal cord meninx" EXACT [OBOL:automatic] synonym: "spinal meninges" EXACT OMO:0003004 [] synonym: "spinal meninx" EXACT [] xref: CALOHA:TS-2148 xref: EHDAA2:0001895 xref: EHDAA:2865 xref: EMAPA:17804 xref: MA:0001130 xref: NCIT:C12350 xref: SCTID:181097002 xref: UMLS:C0037938 {source="ncithesaurus:Spinal_Meninges"} xref: VHOG:0000443 is_a: UBERON:0002360 ! meninx relationship: part_of UBERON:0002240 ! spinal cord property_value: UBPROP:0000001 "Meninges that are part of the spinal cord. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000443", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000443", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003296 name: gland of diencephalon namespace: uberon def: "Any gland that is part of the diencephalon. Examples: pineal gland, neurohypophysis." [http://orcid.org/0000-0002-6601-2165] synonym: "diencephalon gland" EXACT [OBOL:automatic] synonym: "interbrain gland" EXACT [OBOL:automatic] xref: EHDAA2:0000395 xref: EMAPA:16897 xref: VHOG:0000653 relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003299 name: roof plate of midbrain namespace: uberon def: "The mesencephalic roof plate, including the caudal and rostral part of the midbrain roof." [MGI:anna, MGI:smb, MP:0006103] subset: pheno_slim subset: vertebrate_core synonym: "midbrain roof" RELATED [EMAPA:16981] synonym: "midbrain roof plate" EXACT [OBOL:automatic] synonym: "midbrain roofplate" EXACT [OBOL:automatic] synonym: "roof plate mesencephalon" RELATED [VHOG:0000772] synonym: "roof plate midbrain" EXACT [VHOG:0000772] synonym: "roof plate midbrain region" EXACT [ZFA:0000355] synonym: "roofplate midbrain" RELATED [VHOG:0000772] synonym: "roofplate of midbrain" EXACT [OBOL:automatic] xref: DHBA:12320 xref: EHDAA2:0001177 xref: EHDAA:3712 xref: EMAPA:16981 xref: RETIRED_EHDAA2:0001111 xref: TAO:0000355 xref: VHOG:0000772 xref: ZFA:0000355 relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000001 "Roof plate that is part of the midbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000772", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003300 name: roof plate of telencephalon namespace: uberon def: "A roof plate that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "roof plate telencephalon" EXACT [VHOG:0000774] synonym: "roofplate medulla telencephalon" RELATED [VHOG:0000774] synonym: "roofplate of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon roof plate" EXACT [OBOL:automatic] synonym: "telencephalon roofplate" EXACT [OBOL:automatic] xref: EHDAA2:0001994 xref: EHDAA:3512 xref: EMAPA:16657 xref: VHOG:0000774 relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000001 "Roof plate that is part of the telencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000774", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003301 name: roof plate of diencephalon namespace: uberon def: "A roof plate that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "between brain roof plate" EXACT [OBOL:automatic] synonym: "between brain roofplate" EXACT [OBOL:automatic] synonym: "diencephalon roof plate" EXACT [OBOL:automatic] synonym: "diencephalon roofplate" EXACT [OBOL:automatic] synonym: "interbrain roof plate" EXACT [OBOL:automatic] synonym: "interbrain roofplate" EXACT [OBOL:automatic] synonym: "mature diencephalon roof plate" EXACT [OBOL:automatic] synonym: "mature diencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate diencephalic region" EXACT [ZFA:0001358] synonym: "roof plate diencephalon" EXACT [VHOG:0000771] synonym: "roof plate of between brain" EXACT [OBOL:automatic] synonym: "roof plate of interbrain" EXACT [OBOL:automatic] synonym: "roof plate of mature diencephalon" EXACT [OBOL:automatic] synonym: "roofplate medulla diencephalon" RELATED [VHOG:0000771] synonym: "roofplate of between brain" EXACT [OBOL:automatic] synonym: "roofplate of diencephalon" EXACT [OBOL:automatic] synonym: "roofplate of interbrain" EXACT [OBOL:automatic] synonym: "roofplate of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0000402 xref: EHDAA:1979 xref: EHDAA:2657 xref: EHDAA:3494 xref: EMAPA:16909 xref: TAO:0001358 xref: VHOG:0000771 xref: ZFA:0001358 relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000001 "Roof plate that is part of the diencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000771", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003302 name: roof plate of metencephalon namespace: uberon def: "A roof plate that is part of a metencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "epencephalon-2 roof plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 roofplate" EXACT [OBOL:automatic] synonym: "metencephalon roof plate" EXACT [OBOL:automatic] synonym: "metencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate metencephalon" EXACT [VHOG:0000770] synonym: "roof plate of epencephalon-2" EXACT [OBOL:automatic] synonym: "roofplate medulla metencephalon" RELATED [VHOG:0000770] synonym: "roofplate of epencephalon-2" EXACT [OBOL:automatic] synonym: "roofplate of metencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0001160 xref: EHDAA:5524 xref: VHOG:0000770 relationship: part_of UBERON:0001895 ! metencephalon property_value: UBPROP:0000001 "Roof plate that is part of the metencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000770", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003303 name: roof plate of medulla oblongata namespace: uberon def: "A roof plate that is part of a medulla oblongata [Automatically generated definition]." [OBOL:automatic] synonym: "bulb roof plate" EXACT [OBOL:automatic] synonym: "bulb roofplate" EXACT [OBOL:automatic] synonym: "medulla oblongata roof plate" EXACT [OBOL:automatic] synonym: "medulla oblongata roofplate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata roof plate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata roofplate" EXACT [OBOL:automatic] synonym: "metepencephalon roof plate" EXACT [OBOL:automatic] synonym: "metepencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate medulla oblongata" EXACT [VHOG:0000776] synonym: "roof plate of bulb" EXACT [OBOL:automatic] synonym: "roof plate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "roof plate of metepencephalon" EXACT [OBOL:automatic] synonym: "roofplate medulla oblongata" RELATED [VHOG:0000776] synonym: "roofplate of bulb" EXACT [OBOL:automatic] synonym: "roofplate of medulla oblongata" EXACT [OBOL:automatic] synonym: "roofplate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0001099 xref: EHDAA:7614 xref: VHOG:0000776 relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000001 "Roof plate that is part of the medulla oblongata. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000776", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003307 name: floor plate of midbrain namespace: uberon def: "A floor plate that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate mesencephalon" RELATED [VHOG:0000780] synonym: "floor plate midbrain" EXACT [VHOG:0000780] synonym: "floor plate midbrain region" EXACT [ZFA:0001677] synonym: "floorplate midbrain" RELATED [VHOG:0000780] synonym: "floorplate of midbrain" EXACT [OBOL:automatic] synonym: "midbrain floor plate" EXACT [OBOL:automatic] synonym: "midbrain floorplate" EXACT [OBOL:automatic] xref: DHBA:12325 xref: EHDAA2:0001164 xref: EHDAA:3698 xref: EMAPA:16975 xref: RETIRED_EHDAA2:0001106 xref: TAO:0002196 xref: VHOG:0000780 xref: ZFA:0001677 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000001 "Floor plate that is part of the midbrain.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002196", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship type change: subclass multi-tissue structure (CARO:0000055) CHANGED TO: develops_from multi-tissue structure (UBERON:0000481)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002196", ontology="TAO"} property_value: UBPROP:0000002 "relationship type change: subclass multi-tissue structure (CARO:0000055) CHANGED TO: part_of multi-tissue structure (UBERON:0000481)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002196", ontology="TAO"} property_value: UBPROP:0000003 "In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000780", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003308 name: floor plate of telencephalon namespace: uberon def: "A floor plate that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "floor plate telencephalic region" EXACT [ZFA:0000914] synonym: "floor plate telencephalon" EXACT [VHOG:0000783] synonym: "floorplate of telencephalon" EXACT [OBOL:automatic] synonym: "floorplate telencephalon" EXACT [ZFA:0000914] synonym: "telencephalon floor plate" EXACT [OBOL:automatic] synonym: "telencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0001983 xref: EHDAA:3498 xref: EMAPA:16655 xref: TAO:0000914 xref: VHOG:0000783 xref: ZFA:0000914 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000003 "In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000783", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003309 name: floor plate of diencephalon namespace: uberon def: "A floor plate that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "between brain floor plate" EXACT [OBOL:automatic] synonym: "between brain floorplate" EXACT [OBOL:automatic] synonym: "diencephalon floor plate" EXACT [OBOL:automatic] synonym: "diencephalon floorplate" EXACT [OBOL:automatic] synonym: "floor plate diencephalic region" EXACT [ZFA:0000871] synonym: "floor plate diencephalon" EXACT [VHOG:0000782] synonym: "floor plate of between brain" EXACT [OBOL:automatic] synonym: "floor plate of interbrain" EXACT [OBOL:automatic] synonym: "floor plate of mature diencephalon" EXACT [OBOL:automatic] synonym: "floorplate diencephalon" EXACT [ZFA:0000871] synonym: "floorplate of between brain" EXACT [OBOL:automatic] synonym: "floorplate of diencephalon" EXACT [OBOL:automatic] synonym: "floorplate of interbrain" EXACT [OBOL:automatic] synonym: "floorplate of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain floor plate" EXACT [OBOL:automatic] synonym: "interbrain floorplate" EXACT [OBOL:automatic] synonym: "mature diencephalon floor plate" EXACT [OBOL:automatic] synonym: "mature diencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0000388 xref: EHDAA:1975 xref: EHDAA:2651 xref: EHDAA:3480 xref: EMAPA:16903 xref: TAO:0000871 xref: VHOG:0000782 xref: ZFA:0000871 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000003 "In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000782", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003310 name: floor plate of metencephalon namespace: uberon def: "A floor plate that is part of a metencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "epencephalon-2 floor plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 floorplate" EXACT [OBOL:automatic] synonym: "floor plate metencephalon" EXACT [VHOG:0000784] synonym: "floor plate of epencephalon-2" EXACT [OBOL:automatic] synonym: "floorplate metencephalon" RELATED [VHOG:0000784] synonym: "floorplate of epencephalon-2" EXACT [OBOL:automatic] synonym: "floorplate of metencephalon" EXACT [OBOL:automatic] synonym: "metencephalon floor plate" EXACT [OBOL:automatic] synonym: "metencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0001158 xref: EHDAA:5500 xref: EMAPA:17258 xref: VHOG:0000784 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001895 ! metencephalon property_value: UBPROP:0000003 "In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000784", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003311 name: floor plate of medulla oblongata namespace: uberon def: "A floor plate that is part of a medulla oblongata [Automatically generated definition]." [OBOL:automatic] synonym: "bulb floor plate" EXACT [OBOL:automatic] synonym: "bulb floorplate" EXACT [OBOL:automatic] synonym: "floor plate medulla oblongata" EXACT [VHOG:0000786] synonym: "floor plate of bulb" EXACT [OBOL:automatic] synonym: "floor plate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "floor plate of metepencephalon" EXACT [OBOL:automatic] synonym: "floorplate medulla oblongata" RELATED [VHOG:0000786] synonym: "floorplate of bulb" EXACT [OBOL:automatic] synonym: "floorplate of medulla oblongata" EXACT [OBOL:automatic] synonym: "floorplate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "floorplate of metepencephalon" EXACT [OBOL:automatic] synonym: "medulla oblongata floor plate" EXACT [OBOL:automatic] synonym: "medulla oblongata floorplate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata floor plate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata floorplate" EXACT [OBOL:automatic] synonym: "metepencephalon floor plate" EXACT [OBOL:automatic] synonym: "metepencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0001097 xref: EHDAA:7590 xref: EMAPA:17551 xref: VHOG:0000786 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000003 "In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000786", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003338 name: ganglion of peripheral nervous system namespace: uberon def: "A spatially aggregated collection of nerve cell bodies in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO)." [BIRNLEX:2548] subset: cumbo synonym: "peripheral nervous system ganglion" EXACT [OBOL:automatic] xref: BIRNLEX:2548 xref: BTO:0001123 xref: EMAPA:32814 xref: MA:0001161 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: UBPROP:0000012 "we follow MA in including separate classes for ganglion and peripheral nervous system, even though for vertebrates gangia are always in the PNS" xsd:string {external_ontology="MA"} [Term] id: UBERON:0003339 name: ganglion of central nervous system namespace: uberon def: "A ganglion that is part of a central nervous system [Automatically generated definition]." [OBOL:automatic] synonym: "central nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion of neuraxis" EXACT [OBOL:automatic] synonym: "neuraxis ganglion" EXACT [OBOL:automatic] xref: EHDAA2:0000227 xref: EMAPA:16658 xref: FMA:83843 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0001017 ! central nervous system property_value: UBPROP:0000012 "this has no subclasses in FMA. In EHDAA2 and EMAPA it has only the cranial ganglia" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0003363 name: epithelium of ductus reuniens namespace: uberon def: "An epithelium that is part of a ductus reuniens [Automatically generated definition]." [OBOL:automatic] synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic] xref: EMAPA:17289 is_a: UBERON:0006932 ! vestibular epithelium [Term] id: UBERON:0003429 name: abdomen nerve namespace: uberon def: "A nerve that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of abdomen" EXACT [OBOL:automatic] xref: MA:0000521 is_a: UBERON:0003825 ! nerve of abdominal segment [Term] id: UBERON:0003430 name: neck nerve namespace: uberon def: "A nerve that is part of a neck [Automatically generated definition]." [OBOL:automatic] synonym: "neck (volume) nerve" EXACT [OBOL:automatic] synonym: "nerve of neck" EXACT [OBOL:automatic] synonym: "nerve of neck (volume)" EXACT [OBOL:automatic] xref: EMAPA:37263 {source="MA:th"} xref: MA:0000588 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003431 name: leg nerve namespace: uberon def: "A nerve that is part of a leg [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of leg" EXACT [OBOL:automatic] xref: EMAPA:37343 {source="MA:th"} xref: MA:0000673 is_a: UBERON:0003442 ! hindlimb nerve [Term] id: UBERON:0003432 name: chest nerve namespace: uberon def: "A nerve that is part of a chest [Automatically generated definition]." [OBOL:automatic] synonym: "anterior thoracic region nerve" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax nerve" EXACT [OBOL:automatic] synonym: "front of thorax nerve" EXACT [OBOL:automatic] synonym: "nerve of anterior thoracic region" EXACT [OBOL:automatic] synonym: "nerve of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "nerve of chest" EXACT [OBOL:automatic] synonym: "nerve of front of thorax" EXACT [OBOL:automatic] xref: EMAPA:37266 {source="MA:th"} xref: MA:0000551 is_a: UBERON:0003824 ! nerve of thoracic segment [Term] id: UBERON:0003433 name: arm nerve namespace: uberon def: "A nerve that is part of an arm [Automatically generated definition]." [OBOL:automatic] synonym: "brachial region nerve" EXACT [OBOL:automatic] synonym: "nerve of arm" EXACT [OBOL:automatic] synonym: "nerve of brachial region" EXACT [OBOL:automatic] xref: EMAPA:37336 {source="MA:th"} xref: MA:0000595 is_a: UBERON:0003441 ! forelimb nerve [Term] id: UBERON:0003434 name: wrist nerve namespace: uberon def: "A nerve that is part of a wrist [Automatically generated definition]." [OBOL:automatic] synonym: "carpal region nerve" EXACT [OBOL:automatic] synonym: "nerve of carpal region" EXACT [OBOL:automatic] synonym: "nerve of wrist" EXACT [OBOL:automatic] xref: EMAPA:37339 {source="MA:th"} xref: MA:0000637 is_a: UBERON:0003448 ! manus nerve [Term] id: UBERON:0003435 name: pedal digit nerve namespace: uberon def: "A nerve that is part of a toe [Automatically generated definition]." [OBOL:automatic] synonym: "digit of foot nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb nerve" EXACT [OBOL:automatic] synonym: "digitus pedis nerve" EXACT [OBOL:automatic] synonym: "foot digit nerve" EXACT [MA:0000649] synonym: "foot digit nerve" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit nerve" EXACT [OBOL:accepted] synonym: "nerve of digit of foot" EXACT [OBOL:automatic] synonym: "nerve of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "nerve of digitus pedis" EXACT [OBOL:automatic] synonym: "nerve of foot digit" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "nerve of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit nerve" EXACT [OBOL:automatic] synonym: "toe nerve" EXACT [OBOL:automatic] xref: EMAPA:37348 {source="MA:th"} xref: MA:0000649 xref: SCTID:300056004 is_a: UBERON:0003445 ! pes nerve [Term] id: UBERON:0003436 name: shoulder nerve namespace: uberon def: "A nerve that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of shoulder" EXACT [OBOL:automatic] xref: EMAPA:37335 {source="MA:th"} xref: MA:0000634 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003437 name: eyelid nerve namespace: uberon def: "A nerve that innervates an eyelid." [http://orcid.org/0000-0002-6601-2165] synonym: "blepharon nerve" EXACT [OBOL:automatic] synonym: "nerve of blepharon" EXACT [OBOL:automatic] synonym: "nerve of eyelid" EXACT [OBOL:automatic] synonym: "palpebral nerve" EXACT [OBOL:automatic] xref: EMAPA:37535 {source="MA:th"} xref: MA:0001255 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003438 name: iris nerve namespace: uberon def: "Any nerve that innervates the iris." [UBERON:cjm] synonym: "ciliary nerve" NARROW [] synonym: "nerve of iris" EXACT [OBOL:automatic] xref: EMAPA:35449 xref: MA:0001291 is_a: UBERON:0001021 ! nerve property_value: IAO:0000116 "added for consistency with mouse ontologies. The term 'ciliary nerve' is usually used to denote either of the two nerves (with different origins) that innervate the iris, as well as ciliary muscles and cornea" xsd:string [Term] id: UBERON:0003439 name: nerve of trunk region namespace: uberon def: "A nerve that is part of the trunk region of the body (not to be confused with a nerve trunk)." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class subset: non_informative synonym: "nerve of torso" EXACT [OBOL:automatic] synonym: "nerve of trunk" EXACT [OBOL:automatic] synonym: "torso nerve" EXACT [OBOL:automatic] synonym: "trunk nerve" RELATED [MA:0000515] xref: EMAPA:37264 {source="MA:th"} xref: MA:0000515 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003440 name: limb nerve namespace: uberon def: "A nerve that is part of a limb [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of limb" EXACT [OBOL:automatic] xref: EMAPA:37291 {source="MA:th"} xref: MA:0000693 xref: SCTID:359923002 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003441 name: forelimb nerve namespace: uberon def: "A nerve that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] synonym: "fore limb nerve" EXACT [OBOL:automatic] synonym: "nerve of fore limb" EXACT [OBOL:automatic] synonym: "nerve of forelimb" EXACT [OBOL:automatic] synonym: "nerve of superior member" EXACT [OBOL:automatic] synonym: "nerve of upper extremity" EXACT [OBOL:automatic] synonym: "wing nerve" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:37334 {source="MA:th"} xref: MA:0000616 is_a: UBERON:0003440 ! limb nerve [Term] id: UBERON:0003442 name: hindlimb nerve namespace: uberon def: "A nerve that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb nerve" EXACT [OBOL:automatic] synonym: "nerve of hind limb" EXACT [OBOL:automatic] synonym: "nerve of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of inferior member" EXACT [OBOL:automatic] synonym: "nerve of lower extremity" EXACT [OBOL:automatic] xref: EMAPA:37342 {source="MA:th"} xref: MA:0000664 is_a: UBERON:0003440 ! limb nerve [Term] id: UBERON:0003443 name: thoracic cavity nerve namespace: uberon def: "A nerve that is located in a thoracic cavity [Automatically generated definition]." [OBOL:automatic] synonym: "cavity of chest nerve" EXACT [OBOL:automatic] synonym: "cavity of thorax nerve" EXACT [OBOL:automatic] synonym: "chest cavity nerve" EXACT [OBOL:automatic] synonym: "nerve of cavity of chest" EXACT [OBOL:automatic] synonym: "nerve of cavity of thorax" EXACT [OBOL:automatic] synonym: "nerve of chest cavity" EXACT [OBOL:automatic] synonym: "nerve of pectoral cavity" EXACT [OBOL:automatic] synonym: "nerve of thoracic cavity" EXACT [OBOL:automatic] synonym: "pectoral cavity nerve" EXACT [OBOL:automatic] xref: EMAPA:37267 {source="MA:th"} xref: MA:0000556 is_a: UBERON:0001021 ! nerve property_value: IAO:0000116 "consider merging with thoracic nerve. In MA the only subclass is the phrenic nerve, which arises from a cervical nerve" xsd:string [Term] id: UBERON:0003444 name: pelvis nerve namespace: uberon def: "A nerve that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of pelvis" EXACT [OBOL:automatic] xref: EMAPA:37269 {source="MA:th"} xref: MA:0000542 is_a: UBERON:0003825 ! nerve of abdominal segment [Term] id: UBERON:0003445 name: pes nerve namespace: uberon def: "A nerve that is part of a foot [Automatically generated definition]." [OBOL:automatic] synonym: "foot nerve" EXACT [MA:0000653] synonym: "nerve of foot" EXACT [OBOL:automatic] xref: EMAPA:37347 {source="MA:th"} xref: MA:0000653 is_a: UBERON:0003442 ! hindlimb nerve [Term] id: UBERON:0003446 name: ankle nerve namespace: uberon def: "A nerve that is part of an ankle [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of ankle" EXACT [OBOL:automatic] synonym: "neural network of ankle" RELATED [FMA:86901] synonym: "tarsal region nerve" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37346 {source="MA:th"} xref: MA:0000640 is_a: UBERON:0003445 ! pes nerve property_value: seeAlso FMA:86901 property_value: UBPROP:0000012 "FMA placement dubious" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0003447 name: digit nerve of manus namespace: uberon def: "A nerve that is part of a finger [Automatically generated definition]." [OBOL:automatic] synonym: "digit of hand nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "digitus manus nerve" EXACT [OBOL:automatic] synonym: "finger nerve" EXACT [OBOL:automatic] synonym: "hand digit nerve" EXACT [MA:0000625] synonym: "nerve of digit of hand" EXACT [OBOL:automatic] synonym: "nerve of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of digitus manus" EXACT [OBOL:automatic] synonym: "nerve of finger" EXACT [OBOL:automatic] synonym: "nerve of hand digit" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit nerve" EXACT [OBOL:automatic] xref: EMAPA:37341 {source="MA:th"} xref: MA:0000625 xref: SCTID:181015006 is_a: UBERON:0003448 ! manus nerve [Term] id: UBERON:0003448 name: manus nerve namespace: uberon def: "A nerve that is part of a manus [Automatically generated definition]." [OBOL:automatic] synonym: "hand nerve" EXACT [MA:0000629] synonym: "nerve of hand" EXACT [UBERON:cjm] synonym: "nerve of manus" EXACT [OBOL:automatic] xref: EMAPA:37340 {source="MA:th"} xref: MA:0000629 is_a: UBERON:0003441 ! forelimb nerve [Term] id: UBERON:0003499 name: brain blood vessel namespace: uberon def: "A blood vessel that is part of a brain [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of brain" EXACT [OBOL:automatic] xref: EMAPA:35182 xref: MA:0002769 relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0008998 ! vasculature of brain [Term] id: UBERON:0003501 name: retina blood vessel namespace: uberon def: "A blood vessel that is part of a retina [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic] synonym: "blood vessel of retina" EXACT [OBOL:automatic] synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic] synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic] synonym: "retinal blood vessel" EXACT [OBOL:automatic] synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36520 xref: GAID:509 xref: MA:0001317 xref: MESH:D012171 xref: SCTID:280692003 xref: XAO:0004153 relationship: part_of UBERON:0000966 ! retina relationship: part_of UBERON:0004864 ! vasculature of retina [Term] id: UBERON:0003528 name: brain gray matter namespace: uberon def: "A gray matter that is part of a brain [Automatically generated definition]." [OBOL:automatic] synonym: "brain grey matter" EXACT [MA:0000810] synonym: "brain grey substance" EXACT [OBOL:automatic] synonym: "gray matter of brain" EXACT [OBOL:automatic] synonym: "grey matter of brain" EXACT [OBOL:automatic] synonym: "grey substance of brain" EXACT [OBOL:automatic] xref: EMAPA:35184 xref: MA:0000810 xref: NCIT:C49333 xref: UMLS:C1707348 {source="ncithesaurus:Cerebral_Gray_Matter"} is_a: UBERON:0002020 ! gray matter relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003535 name: vagus X nerve trunk namespace: uberon alt_id: UBERON:0006308 def: "A nerve trunk that is part of a vagus nerve." [OBOL:automatic] synonym: "trunk of vagal nerve" EXACT [] synonym: "trunk of vagus nerve" EXACT [FMA:6221] synonym: "vagal nerve trunk" EXACT [EMAPA:17272] synonym: "vagal X nerve trunk" EXACT [EMAPA:17272] synonym: "vagus nerve trunk" EXACT [] synonym: "vagus neural trunk" EXACT [FMA:6221] xref: EHDAA2:0002160 xref: EHDAA:4659 xref: EMAPA:17272 xref: FMA:6221 xref: MA:0001150 xref: SCTID:280308004 xref: VHOG:0000736 is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0003544 name: brain white matter namespace: uberon def: "The regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] subset: pheno_slim synonym: "brain white matter of neuraxis" EXACT [OBOL:automatic] synonym: "brain white substance" EXACT [OBOL:automatic] synonym: "white matter of brain" EXACT [OBOL:automatic] synonym: "white matter of neuraxis of brain" EXACT [OBOL:automatic] synonym: "white substance of brain" EXACT [OBOL:automatic] xref: EMAPA:35187 xref: MA:0000820 xref: NCIT:C49334 xref: UMLS:C1706995 {source="ncithesaurus:Brain_White_Matter"} is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003547 name: brain meninx namespace: uberon def: "A meninx that is part of a brain [Automatically generated definition]." [OBOL:automatic] subset: organ_slim subset: pheno_slim synonym: "brain meninges" EXACT [OBOL:automatic] synonym: "meninges of brain" EXACT [OBOL:automatic] synonym: "meninx of brain" EXACT [OBOL:automatic] xref: CALOHA:TS-2147 xref: EMAPA:32662 xref: MA:0000813 xref: SCTID:180949007 xref: VHOG:0000013 is_a: UBERON:0002360 ! meninx relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000001 "Meninges that are part of the brain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000013", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000013", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003548 name: forebrain meninges namespace: uberon def: "A meninx that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] synonym: "forebrain meninx" EXACT [OBOL:automatic] synonym: "meninges of forebrain" EXACT [OBOL:automatic] synonym: "meninx of forebrain" EXACT [OBOL:automatic] xref: EMAPA:37543 {source="MA:th"} xref: MA:0000883 is_a: UBERON:0003547 ! brain meninx relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003549 name: brain pia mater namespace: uberon def: "The fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule." [MP:0009026] subset: pheno_slim synonym: "brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of brain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of brain" EXACT [OBOL:automatic] xref: EMAPA:32667 xref: MA:0000816 xref: NCIT:C49335 xref: UMLS:C1706994 {source="ncithesaurus:Brain_Pia_Mater"} xref: VHOG:0000470 is_a: UBERON:0002361 ! pia mater is_a: UBERON:0003547 ! brain meninx relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000001 "The innermost of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000470", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pia+mater"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000470", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003550 name: forebrain pia mater namespace: uberon def: "A pia mater that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] synonym: "forebrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of forebrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of forebrain" EXACT [OBOL:automatic] xref: EMAPA:37546 {source="MA:th"} xref: MA:0000886 is_a: UBERON:0003548 ! forebrain meninges is_a: UBERON:0003549 ! brain pia mater relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003551 name: midbrain pia mater namespace: uberon def: "A pia mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] synonym: "mesencephalon pia mater" RELATED [VHOG:0000467] synonym: "midbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of midbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of midbrain" EXACT [OBOL:automatic] xref: EHDAA2:0001175 xref: EMAPA:17794 xref: MA:0001061 xref: RETIRED_EHDAA2:0001110 xref: VHOG:0000467 is_a: UBERON:0003288 ! meninx of midbrain is_a: UBERON:0003549 ! brain pia mater relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000001 "Pia mater that is part of the midbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000467", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000467", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003552 name: telencephalon pia mater namespace: uberon def: "A pia mater that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "pia mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "pia mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon pia mater of neuraxis" EXACT [OBOL:automatic] xref: EHDAA2:0001992 xref: EMAPA:17777 xref: MA:0000982 xref: VHOG:0000476 is_a: UBERON:0003289 ! meninx of telencephalon is_a: UBERON:0003550 ! forebrain pia mater relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000001 "Pia mater that is part of the telencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000476", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000476", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003553 name: diencephalon pia mater namespace: uberon def: "A pia mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "between brain pia mater" EXACT [OBOL:automatic] synonym: "between brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "interbrain pia mater" EXACT [OBOL:automatic] synonym: "interbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon pia mater" EXACT [OBOL:automatic] synonym: "mature diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of between brain" EXACT [OBOL:automatic] synonym: "pia mater of diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of interbrain" EXACT [OBOL:automatic] synonym: "pia mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0000400 xref: EMAPA:17767 xref: MA:0000829 xref: VHOG:0000475 is_a: UBERON:0003290 ! meninx of diencephalon is_a: UBERON:0003550 ! forebrain pia mater relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000001 "Pia mater that is part of the diencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000475", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000475", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003554 name: hindbrain pia mater namespace: uberon def: "A pia mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] synonym: "hindbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of hindbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "rhombencephalon pia mater" RELATED [VHOG:0000466] xref: EHDAA2:0000772 xref: EMAPA:17786 xref: MA:0000990 xref: VHOG:0000466 is_a: UBERON:0003291 ! meninx of hindbrain is_a: UBERON:0003549 ! brain pia mater relationship: part_of UBERON:0002028 ! hindbrain property_value: UBPROP:0000001 "Pia mater that is part of the hindbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000466", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000466", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003555 name: spinal cord pia mater namespace: uberon def: "A pia mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] subset: organ_slim synonym: "pia mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "pia mater of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord pia mater of neuraxis" EXACT [OBOL:automatic] xref: EHDAA2:0001896 xref: EMAPA:17807 xref: MA:0001133 xref: NCIT:C49800 xref: UMLS:C1710148 {source="ncithesaurus:Spinal_Cord_Pia_Mater"} xref: VHOG:0000468 is_a: UBERON:0002361 ! pia mater is_a: UBERON:0003292 ! meninx of spinal cord relationship: part_of UBERON:0002240 ! spinal cord property_value: UBPROP:0000001 "The innermost of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000468", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pia+mater"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000468", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003556 name: forebrain arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] synonym: "arachnoid mater of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid of forebrain" EXACT [OBOL:automatic] synonym: "forebrain arachnoid" EXACT [OBOL:automatic] synonym: "forebrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:37544 {source="MA:th"} xref: MA:0000884 is_a: UBERON:0002362 ! arachnoid mater is_a: UBERON:0003548 ! forebrain meninges relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003557 name: midbrain arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] synonym: "arachnoid mater of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid of midbrain" EXACT [OBOL:automatic] synonym: "mesencephalon arachnoid mater" RELATED [VHOG:0000233] synonym: "midbrain arachnoid" EXACT [OBOL:automatic] synonym: "midbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17792 xref: MA:0001059 xref: VHOG:0000233 is_a: UBERON:0002362 ! arachnoid mater is_a: UBERON:0003288 ! meninx of midbrain relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000001 "Arachnoid mater that is part of the midbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000233", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000233", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003558 name: diencephalon arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "arachnoid mater of between brain" EXACT [OBOL:automatic] synonym: "arachnoid mater of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid of between brain" EXACT [OBOL:automatic] synonym: "arachnoid of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid of mature diencephalon" EXACT [OBOL:automatic] synonym: "between brain arachnoid" EXACT [OBOL:automatic] synonym: "between brain arachnoid mater" EXACT [OBOL:automatic] synonym: "between brain arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon arachnoid" EXACT [OBOL:automatic] synonym: "diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "interbrain arachnoid" EXACT [OBOL:automatic] synonym: "interbrain arachnoid mater" EXACT [OBOL:automatic] synonym: "interbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid mater" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17765 xref: MA:0000827 xref: VHOG:0000231 is_a: UBERON:0003290 ! meninx of diencephalon is_a: UBERON:0003556 ! forebrain arachnoid mater relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000001 "Arachnoid mater that is part of the diencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000231", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000231", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003559 name: hindbrain arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] synonym: "arachnoid mater of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid of hindbrain" EXACT [OBOL:automatic] synonym: "hindbrain arachnoid" EXACT [OBOL:automatic] synonym: "hindbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "rhombencephalon arachnoid mater" RELATED [VHOG:0000236] xref: EMAPA:17784 xref: MA:0000988 xref: VHOG:0000236 is_a: UBERON:0002362 ! arachnoid mater is_a: UBERON:0003291 ! meninx of hindbrain relationship: part_of UBERON:0002028 ! hindbrain property_value: UBPROP:0000001 "Arachnoid mater that is part of the hindbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000236", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000236", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003560 name: spinal cord arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] subset: organ_slim synonym: "arachnoid mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "arachnoid mater of spinal cord" EXACT [OBOL:automatic] synonym: "arachnoid of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord arachnoid" EXACT [OBOL:automatic] synonym: "spinal cord arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17805 xref: MA:0001131 xref: VHOG:0000234 is_a: UBERON:0002362 ! arachnoid mater is_a: UBERON:0003292 ! meninx of spinal cord relationship: part_of UBERON:0002240 ! spinal cord property_value: UBPROP:0000001 "The middle membrane of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000234", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/arachnoid+mater"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000234", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003561 name: forebrain dura mater namespace: uberon def: "A dura mater that is part of a forebrain." [OBOL:automatic] synonym: "dura mater of forebrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "forebrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:37545 {source="MA:th"} xref: MA:0000885 is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003548 ! forebrain meninges relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003562 name: midbrain dura mater namespace: uberon def: "A dura mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] synonym: "dura mater of midbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "mesencephalon dura mater" RELATED [VHOG:0000410] synonym: "midbrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17793 xref: MA:0001060 xref: VHOG:0000410 is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003288 ! meninx of midbrain relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000001 "Dura mater that is part of the midbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000410", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000410", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003563 name: telencephalon dura mater namespace: uberon def: "A dura mater that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "dura mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "dura mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17776 xref: MA:0000981 is_a: UBERON:0003289 ! meninx of telencephalon is_a: UBERON:0003561 ! forebrain dura mater relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003564 name: diencephalon dura mater namespace: uberon def: "A dura mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "between brain dura mater" EXACT [OBOL:automatic] synonym: "between brain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "dura mater of between brain" EXACT [OBOL:automatic] synonym: "dura mater of diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of interbrain" EXACT [OBOL:automatic] synonym: "dura mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain dura mater" EXACT [OBOL:automatic] synonym: "interbrain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon dura mater" EXACT [OBOL:automatic] synonym: "mature diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17766 xref: MA:0000828 xref: VHOG:0000258 is_a: UBERON:0003290 ! meninx of diencephalon is_a: UBERON:0003561 ! forebrain dura mater relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000001 "Dura mater that is part of the diencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000258", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000258", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003565 name: hindbrain dura mater namespace: uberon def: "A dura mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] synonym: "dura mater of hindbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "hindbrain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "rhombencephalon dura mater" RELATED [VHOG:0000409] xref: EMAPA:17785 xref: MA:0000989 xref: VHOG:0000409 is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003291 ! meninx of hindbrain relationship: part_of UBERON:0002028 ! hindbrain property_value: UBPROP:0000001 "Dura mater that is part of the hindbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000409", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000409", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003712 name: cavernous sinus namespace: uberon def: "The cavernous sinus (or lateral sellar compartment), within the human head, is a large collection of thin-walled veins creating a cavity bordered by the temporal bone of the skull and the sphenoid bone, lateral to the sella turcica." [Wikipedia:Cavernous_sinus] subset: human_reference_atlas synonym: "cavernous" RELATED [Wikipedia:Cavernous_sinus] synonym: "cavernous sinus syndrome" RELATED [Wikipedia:Cavernous_sinus] synonym: "cavernous sinuses" RELATED [Wikipedia:Cavernous_sinus] synonym: "cavernus sinus vein" RELATED [Wikipedia:Cavernous_sinus] synonym: "parasellar syndrome" RELATED [Wikipedia:Cavernous_sinus] synonym: "sinus cavernosus" RELATED [Wikipedia:Cavernous_sinus] xref: EMAPA:19059 xref: FMA:50772 xref: GAID:532 xref: MESH:D002426 xref: NCIT:C12690 xref: SCTID:244402005 xref: UMLS:C0007473 {source="ncithesaurus:Cavernous_Sinus"} xref: Wikipedia:Cavernous_sinus is_a: UBERON:0005486 ! venous dural sinus property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "An irregularly shaped venous space in the dura mater at either side of the sphenoid bone[MESH:A07.231.908.224.334]." xsd:string {source="MESH:A07.231.908.224.334"} [Term] id: UBERON:0003714 name: neural tissue namespace: uberon def: "Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature." [FMA:9642] synonym: "nerve tissue" EXACT [FMA:9642] synonym: "nervous tissue" EXACT [FMA:9642] synonym: "portion of neural tissue" EXACT [FMA:9642] xref: AAO:0000325 xref: AEO:0000123 xref: EHDAA2:0003123 xref: FMA:9642 xref: GAID:609 xref: MESH:D009417 xref: NCIT:C13052 xref: SCTID:91728009 xref: UMLS:C0027757 {source="ncithesaurus:Nervous_Tissue"} relationship: part_of UBERON:0001016 ! nervous system property_value: UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000325", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000012 "FMA definition includes vasculature" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0003715 name: splanchnic nerve namespace: uberon def: "The major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318] subset: human_reference_atlas subset: pheno_slim synonym: "splanchnic nerves" RELATED [BAMS:spn] synonym: "visceral nerve" RELATED [Wikipedia:Splanchnic_nerves] xref: BAMS:spn xref: EMAPA:37959 {source="MA:th"} xref: FMA:5883 xref: GAID:800 xref: MESH:D013153 xref: SCTID:264198001 xref: Wikipedia:Splanchnic_nerves is_a: UBERON:0034729 ! sympathetic nerve relationship: part_of UBERON:0000013 ! sympathetic nervous system property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000010 "All carry sympathetic fibers except for the pelvic splanchnic nerves, which carry parasympathetic fibers" xsd:string [Term] id: UBERON:0003716 name: recurrent laryngeal nerve namespace: uberon def: "A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch." [Wikipedia:Recurrent_laryngeal_nerve] subset: human_reference_atlas synonym: "inferior laryngeal nerve" RELATED [GAID:804] synonym: "nervus laryngeus recurrens" EXACT OMO:0003011 [Wikipedia:Recurrent_laryngeal_nerve] synonym: "ramus recurrens" RELATED [AAO:0010754] synonym: "recurrent laryngeal nerve from vagus nerve" EXACT [] synonym: "recurrent nerve" BROAD [Wikipedia:Recurrent_laryngeal_nerve] synonym: "vagus X nerve recurrent laryngeal branch" EXACT [VHOG:0001347] xref: AAO:0010754 xref: FMA:6246 xref: GAID:804 xref: MESH:D012009 xref: SCTID:24227007 xref: VHOG:0001347 xref: Wikipedia:Recurrent_laryngeal_nerve is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: part_of UBERON:0001759 ! vagus nerve property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx[AAO:0010754]." xsd:string {source="AAO:0010754"} [Term] id: UBERON:0003718 name: muscle spindle namespace: uberon def: "The sensory organs in muscle that are involved in the stretch reflex." [MP:0004069] subset: pheno_slim synonym: "muscle stretch receptor" RELATED [GAID:819] synonym: "neuromuscular spindle" EXACT [FMA:83607] synonym: "neuromuscular spindle" RELATED [GAID:819] xref: FMA:83607 xref: GAID:819 xref: MESH:D009470 xref: NCIT:C13824 xref: SCTID:12945004 xref: UMLS:C0027871 {source="ncithesaurus:Muscle_Spindle"} is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003719 name: Pacinian corpuscle namespace: uberon alt_id: UBERON:0003717 def: "Any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [MP:0000988, Wikipedia:Lamellar_corpuscle] subset: pheno_slim synonym: "corpuscle of golgi-mazzoni" EXACT [FMA:83609] synonym: "corpusculum lamellosum" EXACT OMO:0003011 [Wikipedia:Lamellar_corpuscle] synonym: "golgi mazzoni corpuscle" RELATED [GAID:817] synonym: "golgi-mazzoni" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609] synonym: "golgi-mazzoni corpuscles" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "lamellar corpuscle" EXACT [Wikipedia:Lamellar_corpuscle] synonym: "lamellated corpuscle" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "pacinian body" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "Pacinian corpuscle" EXACT [Wikipedia:Lamellar_corpuscle] synonym: "pacinian corpuscle" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "pacinian corpuscle end-organs" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "pacinian corpuscles" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "vater-pacini corpuscle" RELATED [Wikipedia:Pacinian_corpuscle] synonym: "vater-pacini corpuscles" RELATED [Wikipedia:Pacinian_corpuscle] xref: FMA:83604 xref: FMA:83609 xref: GAID:817 xref: GAID:820 xref: MESH:D010141 xref: NCIT:C13172 xref: NIF_Subcellular:FMA_83604 xref: SCTID:37419002 xref: Wikipedia:File\:Gray935.png xref: Wikipedia:Lamellar_corpuscle is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray935.png" xsd:anyURI property_value: UBPROP:0000008 "may also be present in the mesentery of cats, in pancreas, in lymph nodes [ISBN:9780849388118]" xsd:string property_value: UBPROP:0000010 "consists of a nerve fiber, an inner core of modified Schwann cells, a subcapsular space and a capsule [ISBN:9780849388118]" xsd:string property_value: UBPROP:0000012 "FMA treats pacinia and G-M as distinct" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0003721 name: lingual nerve namespace: uberon def: "The lingual nerve is a branch of the mandibular nerve (CN V3), itself a branch of the trigeminal nerve, which supplies sensory innervation to the tongue. It also carries fibers from the facial nerve, which return taste information from the anterior two thirds of the tongue." [Wikipedia:Lingual_nerve] subset: human_reference_atlas synonym: "lingual branch of trigeminal nerve" EXACT [] synonym: "trigeminal nerve lingual branch" EXACT [] synonym: "trigeminal V nerve lingual branch" EXACT [MA:0001102] xref: BAMS:5lg xref: EMAPA:19168 xref: FMA:53218 xref: GAID:835 xref: MA:0001102 xref: MESH:D008036 xref: SCTID:280260006 xref: Wikipedia:Lingual_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000375 ! mandibular nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003723 name: vestibular nerve namespace: uberon def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [Wikipedia:Vestibular_nerve] subset: pheno_slim synonym: "nervus vestibularis" RELATED OMO:0003011 [Wikipedia:Vestibular_nerve] synonym: "scarpa ganglion" RELATED [GAID:840] synonym: "scarpa's ganglion" RELATED [GAID:840] synonym: "scarpas ganglion" RELATED [GAID:840] synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401] synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401] synonym: "vestibulocochlear nerve vestibular root" RELATED [BAMS:vVIIIn] synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111] xref: BAMS:vVIIIn xref: DHBA:12869 xref: EHDAA2:0002200 xref: EHDAA:3749 xref: EMAPA:17803 xref: FMA:53401 xref: GAID:840 xref: MA:0001111 xref: MBA:413 xref: MESH:D014725 xref: NCIT:C12820 xref: neuronames:1389 xref: SCTID:362464003 xref: UMLS:C0042598 {source="ncithesaurus:Vestibular_Nerve"} xref: VHOG:0001181 xref: Wikipedia:Vestibular_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg" xsd:anyURI [Term] id: UBERON:0003724 name: musculocutaneous nerve namespace: uberon def: "A large branch of the brachial plexus supplying various parts of the upper arm (as flexor muscles) and forearm (as the skin)." [http://www.merriam-webster.com/medical/musculocutaneous%20nerve] subset: human_reference_atlas synonym: "casserio's nerve" EXACT [FMA:37064] synonym: "nervus musculocutaneus" RELATED OMO:0003011 [Wikipedia:Musculocutaneous_nerve] xref: FMA:37064 xref: GAID:844 xref: MESH:D009138 xref: SCTID:181019000 xref: Wikipedia:Musculocutaneous_nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001814 ! brachial nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003725 name: cervical nerve plexus namespace: uberon def: "An arrangement of nerve fibers, running from the spine that travels to the head and neck where it innervates skin and muscle." [UBERON:cjm] subset: human_reference_atlas synonym: "cervical nerve plexus" EXACT [FMA:5904] synonym: "cervical plexus" EXACT [FMA:5904] synonym: "plexus cervicalis" EXACT OMO:0003011 [FMA:5904, FMA:TA] synonym: "plexus cervicalis" RELATED OMO:0003011 [Wikipedia:Cervical_plexus] xref: BAMS:cep xref: FMA:5904 xref: GAID:847 xref: MESH:D002572 xref: SCTID:181107005 xref: Wikipedia:Cervical_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001813 ! spinal nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Gray784.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003726 name: thoracic nerve namespace: uberon def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A08.800.800.720.800] subset: human_reference_atlas synonym: "nervi thoracici" RELATED OMO:0003011 [Wikipedia:Thoracic_nerves] synonym: "nervus thoracis" EXACT OMO:0003011 [FMA:5860, FMA:TA] synonym: "pectoral nerve" RELATED [GAID:857] synonym: "thoracic spinal nerve" EXACT [FMA:5860] xref: FMA:5860 xref: GAID:857 xref: MESH:D013900 xref: neuronames:1725 xref: SCTID:360498003 xref: Wikipedia:Thoracic_nerves is_a: UBERON:0001780 ! spinal nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003727 name: intercostal nerve namespace: uberon def: "The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]." [Wikipedia:Intercostal_nerves] synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028] synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028] synonym: "nervi intercostales" RELATED OMO:0003011 [Wikipedia:Intercostal_nerves] synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028] synonym: "thoracic anterior ramus" EXACT [FMA:6028] synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028] xref: EMAPA:18227 xref: FMA:6028 xref: GAID:858 xref: MESH:D007367 xref: NCIT:C32825 xref: SCTID:279568001 xref: UMLS:C1285089 {source="ncithesaurus:Intercostal_Nerve"} xref: Wikipedia:Intercostal_nerves is_a: UBERON:0001780 ! spinal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png" xsd:anyURI [Term] id: UBERON:0003824 name: nerve of thoracic segment namespace: uberon def: "A nerve that is part of a thorax [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of thorax" EXACT [OBOL:automatic] synonym: "thoracic segment nerve" EXACT [MA:0000562] synonym: "thorax nerve" EXACT [OBOL:automatic] synonym: "upper body nerve" RELATED [MA:0000562] xref: EMAPA:37265 {source="MA:th"} xref: MA:0000562 xref: MESH:D013900 xref: SCTID:359876006 is_a: UBERON:0003439 ! nerve of trunk region [Term] id: UBERON:0003825 name: nerve of abdominal segment namespace: uberon def: "A nerve that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] synonym: "abdominal segment nerve" EXACT [MA:0000528] xref: EMAPA:37061 {source="MA:th"} xref: MA:0000528 is_a: UBERON:0003439 ! nerve of trunk region [Term] id: UBERON:0003876 name: hippocampal field namespace: uberon def: "A part or parts of the hippocampus that have a particular function." [MGI:csmith, MP:0008262] subset: non_informative subset: pheno_slim synonym: "hippocampal region" RELATED [BAMS:HIP] synonym: "hippocampus region" RELATED [MA:0002428] synonym: "hippocampus subdivision" EXACT [FMA:74041] synonym: "subdivision of hippocampus" EXACT [FMA:74041] xref: BAMS:Hi/CA xref: BAMS:HIP xref: EMAPA:32772 xref: FMA:74041 xref: MA:0002428 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 ! hippocampal formation property_value: UBPROP:0000012 "do not include ABA:HIP" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0003881 name: CA1 field of hippocampus namespace: uberon def: "Part of hippocampus proper bounded by CA2 and the subiculum, characterized by pyramidal neurons that receive projections from pyramidal neurons of CA3 via the Schaffer collaterals." [BIRNLEX:1197] subset: efo_slim subset: pheno_slim synonym: "CA1" EXACT [] synonym: "CA1 field" EXACT [] synonym: "CA1 field of Ammon's horn" EXACT [] synonym: "CA1 field of cornu ammonis" EXACT [] synonym: "CA1 field of hippocampus" EXACT [] synonym: "CA1 field of the Ammon horn" RELATED [BAMS:CA1] synonym: "CA1 field of the hippocampus" RELATED OMO:0003011 [NeuroNames:183] synonym: "cornu ammonis 1" EXACT [BIRNLEX:1197] synonym: "field CA1" RELATED [NeuroNames:183] synonym: "field CA1 of hippocampus" RELATED [NeuroNames:183] synonym: "field CA1, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:183] synonym: "hippocampus CA1" EXACT [] synonym: "prosubiculum = distal ca1" EXACT [BIRNLEX:1197] synonym: "regio I cornus ammonis" EXACT OMO:0003011 [FMA:74042, FMA:TA] synonym: "regio I hippocampi proprii" EXACT OMO:0003011 [FMA:74042, FMA:TA] synonym: "regio superior" EXACT [BIRNLEX:1197] synonym: "regio superior of the hippocampus" EXACT [FMA:74042] synonym: "region 1 of Ammon's horn" EXACT [] synonym: "region CA1" RELATED [NeuroNames:183] synonym: "region i of ammon's horn" EXACT [FMA:74042] synonym: "region i of hippocampus proper" EXACT [FMA:74042] xref: BAMS:CA1 xref: BIRNLEX:1197 xref: DHBA:10297 xref: DMBA:16131 xref: EFO:0002454 xref: EMAPA:32768 xref: FMA:74042 xref: HBA:12892 xref: MA:0000950 xref: MBA:382 xref: MESH:D056547 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32246 xref: neuronames:183 {source="BIRNLEX:1197"} xref: PBA:10058 xref: UMLS:C0694598 {source="ncithesaurus:CA1_Field_of_the_Cornu_Ammonis", source="BIRNLEX:1197"} xref: Wikipedia:Region_I_of_hippocampus_proper is_a: UBERON:0003876 ! hippocampal field property_value: RO:0002171 UBERON:0003882 {source="ABA"} property_value: RO:0002171 UBERON:0003883 {source="ABA"} [Term] id: UBERON:0003882 name: CA2 field of hippocampus namespace: uberon def: "Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)." [BIRNLEX:1362] subset: efo_slim subset: pheno_slim synonym: "CA2" EXACT [] synonym: "CA2 field" EXACT [] synonym: "CA2 field of Ammon's horn" EXACT [] synonym: "CA2 field of cornu ammonis" EXACT [] synonym: "CA2 field of hippocampus" EXACT [] synonym: "CA2 field of the Ammon horn" RELATED [BAMS:CA2] synonym: "CA2 field of the hippocampus" RELATED [NeuroNames:184] synonym: "cornu Ammonis 2" RELATED OMO:0003011 [NeuroNames:184] synonym: "field CA2" RELATED [NeuroNames:184] synonym: "field CA2 of hippocampus" RELATED [NeuroNames:184] synonym: "field CA2, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:184] synonym: "hippocampus CA2" EXACT [] synonym: "regio ii cornus ammonis" EXACT OMO:0003011 [FMA:74044, FMA:TA] synonym: "regio ii hippocampi proprii" EXACT OMO:0003011 [FMA:74044, FMA:TA] synonym: "region 2 of Ammon's horn" EXACT [] synonym: "region CA2" RELATED [NeuroNames:184] synonym: "region II of ammon's horn" EXACT [FMA:74044] synonym: "region II of hippocampus proper" EXACT [FMA:74044] xref: BAMS:CA2 xref: BIRNLEX:1362 xref: DHBA:10298 xref: DMBA:16136 xref: EFO:0002455 xref: EMAPA:32769 xref: FMA:74044 xref: HBA:12893 xref: MA:0000951 xref: MBA:423 xref: MESH:D056651 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32247 xref: neuronames:184 {source="BIRNLEX:1362"} xref: PBA:10063 xref: UMLS:C0694599 {source="ncithesaurus:CA2_Field_of_the_Cornu_Ammonis", source="BIRNLEX:1362"} xref: Wikipedia:Region_II_of_hippocampus_proper is_a: UBERON:0003876 ! hippocampal field property_value: RO:0002171 UBERON:0003881 {source="ABA"} property_value: RO:0002171 UBERON:0003883 {source="ABA"} [Term] id: UBERON:0003883 name: CA3 field of hippocampus namespace: uberon def: "Part of hippocampus proper bounded by the hilus of the dentate gyrus and area CA2, characterized by large pyramidal cells and a dense projection from dentate gyrus granule cell mossy fibers." [http://neurolex.org/wiki/Category\:CA3] subset: efo_slim subset: pheno_slim synonym: "CA3" EXACT [] synonym: "CA3" RELATED [Wikipedia:Region_III_of_hippocampus_proper] synonym: "CA3 field" EXACT [] synonym: "CA3 field of Ammon's horn" EXACT [] synonym: "CA3 field of cornu ammonis" EXACT [] synonym: "CA3 field of hippocampus" EXACT [] synonym: "CA3 field of the Ammon horn" RELATED [BAMS:CA3] synonym: "CA3 field of the hippocampus" RELATED [NeuroNames:185] synonym: "cornu Ammonis 3" RELATED OMO:0003011 [NeuroNames:185] synonym: "field CA3" RELATED [NeuroNames:185] synonym: "field CA3 of hippocampus" RELATED [NeuroNames:185] synonym: "field CA3, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:185] synonym: "hippocampus CA3" EXACT [] synonym: "regio hippocampi proprii III" RELATED OMO:0003011 [Wikipedia:Region_III_of_hippocampus_proper] synonym: "regio III cornus ammonis" EXACT OMO:0003011 [FMA:74045, FMA:TA] synonym: "regio III cornus ammonis" RELATED OMO:0003011 [Wikipedia:Region_III_of_hippocampus_proper] synonym: "regio III hippocampi proprii" EXACT OMO:0003011 [FMA:74045, FMA:TA] synonym: "regio inferior" EXACT [BIRNLEX:1204] synonym: "region 3 of Ammon's horn" EXACT [] synonym: "region CA3" RELATED [NeuroNames:185] synonym: "region III of ammon's horn" EXACT [FMA:74045] synonym: "region III of hippocampus proper" EXACT [FMA:74045] xref: BAMS:CA3 xref: BIRNLEX:1204 xref: DHBA:10299 xref: DMBA:16141 xref: EFO:0002456 xref: EMAPA:32770 xref: FMA:74045 xref: HBA:12894 xref: MA:0000952 xref: MBA:463 xref: MESH:D056654 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32248 xref: neuronames:185 {source="BIRNLEX:1204"} xref: PBA:10068 xref: UMLS:C0694600 {source="BIRNLEX:1204", source="ncithesaurus:CA3_Field_of_the_Cornu_Ammonis"} xref: Wikipedia:Region_III_of_hippocampus_proper is_a: UBERON:0003876 ! hippocampal field property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg" xsd:anyURI property_value: RO:0002171 UBERON:0003881 {source="ABA"} property_value: RO:0002171 UBERON:0003882 {source="ABA"} [Term] id: UBERON:0003884 name: CA4 field of hippocampus namespace: uberon def: "The last of four regions in the cornu ammonis of the hippocampus and is also part of the hilus of the dentate gyrus. This area contains mostly mossy cells that receive inputs from the dentate gyrus and pyramidal cells in the CA3 region and also projects back to the dentate gyrus." [ncithesaurus:CA4_Field_of_the_Cornu_Ammonis] subset: efo_slim subset: pheno_slim synonym: "CA4" EXACT [] synonym: "CA4 field" EXACT [] synonym: "CA4 field of Ammon's horn" EXACT [] synonym: "CA4 field of cornu ammonis" EXACT [] synonym: "hippocampus CA4" EXACT [] synonym: "regio IV cornus ammonis" EXACT OMO:0003011 [FMA:75741, FMA:TA] synonym: "regio IV hippocampi proprii" EXACT OMO:0003011 [FMA:75741, FMA:TA] synonym: "region 4 of Ammon's horn" EXACT [] synonym: "region IV of ammon's horn" EXACT [FMA:75741] synonym: "region IV of hippocampus proper" EXACT [FMA:75741] xref: DHBA:10300 xref: EFO:0002457 xref: EMAPA:32771 xref: FMA:75741 xref: HBA:12895 xref: MA:0000953 xref: NCIT:C32249 xref: neuronames:181 xref: PBA:10074 xref: UMLS:C2328406 {source="ncithesaurus:CA4_Field_of_the_Cornu_Ammonis"} xref: Wikipedia:Region_IV_of_hippocampus_proper is_a: UBERON:0003876 ! hippocampal field property_value: IAO:0000116 "consider obsoleting. consider - CA3c, hilus" xsd:string [Term] id: UBERON:0003902 name: retinal neural layer namespace: uberon def: "The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407] subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "neural layer of retina" EXACT [FMA:58628] synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046] synonym: "neural retinal epithelium" RELATED [MA:000027] synonym: "neuroretina" EXACT [ZFA:0000046] synonym: "stratum nervosum (retina)" EXACT [FMA:58628] synonym: "stratum nervosum retinae" EXACT OMO:0003011 [FMA:58628, FMA:TA] xref: AAO:0011095 xref: BTO:0000929 xref: CALOHA:TS-0685 xref: EHDAA2:0001253 xref: EHDAA:4763 xref: EMAPA:17171 xref: EMAPA:18590 xref: FMA:58628 xref: MA:0000277 xref: NCIT:C33166 xref: TAO:0000046 xref: UMLS:C1518263 {source="ncithesaurus:Neural_Retina"} xref: VHOG:0000535 xref: XAO:0003216 xref: ZFA:0000046 is_a: UBERON:0001781 ! layer of retina property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000535", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003911 name: choroid plexus epithelium namespace: uberon def: "The epithelial component of the choroid plexus. Consists of cuboidal epithelial cells surrounding a core of capillaries and loose connective tissue." [UBERON:cjm, Wikipedia:Choroid_plexus] synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus" EXACT [FMA:242811] xref: BTO:0006008 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:36608 xref: FMA:242811 xref: MA:0000824 xref: NCIT:C42079 xref: UMLS:C1516506 {source="ncithesaurus:Choroid_Plexus_Epithelium"} relationship: part_of UBERON:0001886 ! choroid plexus property_value: UBPROP:0000010 "The CP epithelial layer is continuous with the ependymal cell layer that lines the ventricles, but unlike the ependyma, the epithelial layer has tight gap junctions between the cells on the side facing the ventricle (apical surface). These gap junctions prevent the majority of substances from crossing the cell layer into the CSF; thus the CP acts as a blood-CSF barrier" xsd:string [Term] id: UBERON:0003925 name: photoreceptor inner segment layer namespace: uberon def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [ZFIN:curator] subset: vertebrate_core synonym: "photoreceptor inner segment layers" RELATED OMO:0003004 [ZFA:0001465] synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471] xref: EMAPA:35687 xref: MA:0002471 xref: TAO:0001465 xref: VHOG:0001172 xref: ZFA:0001465 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001172", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003926 name: photoreceptor outer segment layer namespace: uberon subset: vertebrate_core synonym: "photoreceptor outer segment layers" RELATED OMO:0003004 [ZFA:0001466] synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472] xref: EMAPA:35688 xref: MA:0002472 xref: TAO:0001466 xref: VHOG:0001173 xref: ZFA:0001466 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001173", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0003931 name: diencephalic white matter namespace: uberon alt_id: UBERON:0023148 def: "White matter that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "diencephalic tract/commissure" EXACT [ZFA:0000338] synonym: "diencephalic tracts and commissures" EXACT OMO:0003004 [TAO:0000338] synonym: "predominantly white regional part of diencephalon" EXACT [BIRNLEX:1678] synonym: "white matter of diencephalon" EXACT [FMA:83931] xref: BIRNLEX:1678 xref: FMA:83931 xref: TAO:0000338 xref: ZFA:0000338 is_a: UBERON:0019261 ! white matter of forebrain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003936 name: postoptic commissure namespace: uberon subset: efo_slim synonym: "POC" EXACT [ZFA:0000059] synonym: "post optic commissure" EXACT [ZFA:0000059] synonym: "post-optic commissure" EXACT [ZFA:0000059] xref: EFO:0003478 xref: MBA:174 xref: TAO:0000059 xref: ZFA:0000059 is_a: UBERON:0011590 ! commissure of diencephalon relationship: part_of UBERON:0003931 ! diencephalic white matter [Term] id: UBERON:0003938 name: sensory dissociation area namespace: uberon def: "The area of the parietal lobe that integrates tactile and visual stimuli." [MP:0000796] subset: pheno_slim relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0003939 name: transverse gyrus of Heschl namespace: uberon alt_id: UBERON:0022860 def: "The area of the temporal lobe concerned with hearing[MP]. The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [MP:0000803, Wikipedia:Transverse_temporal_gyrus] subset: human_reference_atlas subset: pheno_slim synonym: "gyri temporales transversi" RELATED OMO:0003011 [Wikipedia:Transverse_temporal_gyrus] synonym: "Heshl's gyrus" EXACT [https://github.com/obophenotype/uberon/issues/609] synonym: "transverse temporal cortex" RELATED [BIRNLEX:1389] synonym: "transverse temporal gyri" RELATED OMO:0003004 [Wikipedia:Transverse_temporal_gyrus] synonym: "transverse temporal gyrus" EXACT [Wikipedia:Transverse_temporal_gyrus] xref: BIRNLEX:1389 xref: FMA:273671 xref: neuronames:1520 xref: SCTID:314159008 xref: Wikipedia:Transverse_temporal_gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001393 ! auditory cortex relationship: part_of UBERON:0001871 ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003941 name: cerebellum anterior vermis namespace: uberon def: "The anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure." [MP:0000867] subset: pheno_slim synonym: "anterior cerebellum vermis" EXACT [MA:0002969] synonym: "anterior lobe vermis" RELATED [FMA:72255] synonym: "anterior vermis of cerebellum" EXACT [FMA:72255] synonym: "part of vermal region" EXACT [FMA:72255] synonym: "vermis lobus anterior" EXACT OMO:0003011 [FMA:72255, FMA:TA] synonym: "vermis of anterior lobe" EXACT [FMA:72255] synonym: "vermis of anterior lobe of cerebellum" EXACT [FMA:72255] synonym: "vermis of the anterior lobe of the cerebellum" EXACT [BIRNLEX:1185] xref: BIRNLEX:1185 xref: FMA:72255 xref: HBA:4699 xref: MA:0002969 xref: neuronames:656 is_a: UBERON:0004720 ! cerebellar vermis relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum [Term] id: UBERON:0003943 name: fourth lumbar dorsal root ganglion namespace: uberon def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra." [MP:0001019] subset: defined_by_ordinal_series subset: human_reference_atlas subset: pheno_slim synonym: "forth lumbar dorsal root ganglion" EXACT [BIRNLEX:2626] synonym: "fourth lumbar dorsal root ganglion" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "fourth lumbar spinal ganglion" EXACT [FMA:6338] synonym: "L4 dorsal root ganglion" EXACT [MP:0001019] synonym: "L4 ganglion" RELATED [] xref: BIRNLEX:2626 xref: EMAPA:25167 xref: FMA:6338 xref: UMLS:C0501716 {source="BIRNLEX:2626"} is_a: UBERON:0002836 {source="FMA"} ! lumbar dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003945 name: somatic motor system namespace: uberon def: "The neural tissue involved in the transmission of motor signals." [MP:0001051] subset: pheno_slim xref: EMAPA:37953 {source="MA:th"} relationship: part_of UBERON:0000012 ! somatic nervous system [Term] id: UBERON:0003947 name: brain ventricle/choroid plexus namespace: uberon def: "The brain ventricles or their associated choroid plexuses." [MP:0002200] subset: pheno_slim relationship: part_of UBERON:0000955 ! brain property_value: IAO:0000116 "TODO - check relationship between CP and BV. If this is part of then this class should be obsoleted" xsd:string property_value: IAO:0000116 "TODO merge into BV" xsd:string [Term] id: UBERON:0003961 name: cingulum of brain namespace: uberon def: "The white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain." [MP:0008232] subset: pheno_slim synonym: "cingulum" BROAD [] synonym: "cingulum bundle" EXACT [BAMS:cg] synonym: "cingulum of telencephalon" RELATED [FMA:260761] synonym: "neuraxis cingulum" RELATED [FMA:260761] xref: BAMS:cg xref: DHBA:10572 xref: EMAPA:37828 {source="MA:th"} xref: FMA:260761 xref: FMA:83869 xref: HBA:9240 xref: MBA:940 xref: neuronames:1445 xref: SCTID:369084007 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0003544 ! brain white matter [Term] id: UBERON:0003962 name: pterygopalatine ganglion namespace: uberon def: "The small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands." [MP:0008314, Wikipedia:Pterygopalatine_ganglion] subset: human_reference_atlas subset: pheno_slim synonym: "g. pterygopalatinum" RELATED OMO:0003011 [Wikipedia:Pterygopalatine_ganglion] synonym: "Meckel ganglion" EXACT [MP:0008314] synonym: "Meckel's ganglion" EXACT [FMA:6965] synonym: "nasal ganglion" EXACT [MP:0008314] synonym: "palatine ganglion" EXACT [MP:0008314] synonym: "pterygopalatine ganglia" EXACT [MP:0008314] synonym: "sphenopalatine ganglion" EXACT [MP:0008314] synonym: "sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0001889] xref: BAMS:GptVII xref: EHDAA2:0001889 xref: EMAPA:36275 xref: FMA:6965 xref: SCTID:280364004 xref: Wikipedia:Pterygopalatine_ganglion is_a: UBERON:0001808 ! parasympathetic ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003963 name: otic ganglion namespace: uberon def: "The ganglion that supplies nerve fibers to the parotid gland." [MP:0008315, Wikipedia:Otic_ganglion] subset: human_reference_atlas subset: pheno_slim synonym: "Arnold's ganglion" EXACT [FMA:6967] synonym: "ganglion oticum" RELATED OMO:0003011 [Wikipedia:Otic_ganglion] synonym: "otic parasympathetic ganglion" EXACT [EHDAA2:0001335] xref: BAMS:GoIX xref: EHDAA2:0001335 xref: EHDAA:6706 xref: EMAPA:36274 xref: FMA:6967 xref: SCTID:279283005 xref: Wikipedia:Otic_ganglion is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001808 ! parasympathetic ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray783.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003964 name: prevertebral ganglion namespace: uberon def: "The sympathetic ganglia located in front of the vertebral column and are associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia." [ISBN:0-683-40008-8, MP:0008316] subset: human_reference_atlas subset: pheno_slim synonym: "collateral ganglia" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "collateral ganglion" EXACT [FMA:5892] synonym: "pre-aortic ganglia" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "preaortic ganglia" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "prevertebral ganglion" RELATED [Wikipedia:Prevertebral_ganglia] synonym: "prevertebral plexuses" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "previsceral ganglion" EXACT [FMA:5892] synonym: "three great gangliated plexuses" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] xref: FMA:5892 xref: MA:0003101 xref: Wikipedia:Prevertebral_ganglia is_a: UBERON:0001806 ! sympathetic ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003965 name: sympathetic afferent fiber namespace: uberon def: "The fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord." [MP:0008319] subset: pheno_slim xref: Wikipedia:General_visceral_afferent_fibers is_a: UBERON:0006134 ! nerve fiber relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0003979 name: utricle valve namespace: uberon def: "The utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals." [MP:0009261] subset: pheno_slim relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0003980 name: cerebellum fissure namespace: uberon def: "One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows." [MP:0009267] subset: pheno_slim synonym: "cerebellar fissure" EXACT [] synonym: "cerebellar fissures" RELATED OMO:0003004 [BAMS:CBf] synonym: "cerebellar fissures set" RELATED OMO:0003004 [FMA:77789] synonym: "cerebellar sulci" RELATED OMO:0003004 [HBA:9406] synonym: "cerebellar sulcus" RELATED [] synonym: "fissurae cerebelli" EXACT OMO:0003011 [FMA:77789, FMA:TA] synonym: "set of cerebellar fissures" RELATED OMO:0003004 [FMA:77789] synonym: "sulcus of cerebellum" RELATED [] xref: BAMS:CBf xref: DHBA:12828 xref: EMAPA:37818 {source="MA:th"} xref: FMA:321547 xref: HBA:9406 xref: neuronames:1213 xref: SCTID:314163001 is_a: UBERON:0014466 ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum property_value: UBPROP:0000202 FMA:77789 [Term] id: UBERON:0003989 name: medulla oblongata anterior median fissure namespace: uberon def: "The longitudinal groove in the midline of the anterior aspect of the medulla oblongata." [MP:0009680] subset: pheno_slim synonym: "anterior median fissure" EXACT [FMA:83734] synonym: "anterior median fissure of medulla" EXACT [FMA:83734] synonym: "anterior median fissure of medulla oblongata" EXACT [FMA:83734] synonym: "fissura mediana anterior medullae oblongatae" EXACT OMO:0003011 [FMA:83734, FMA:TA] synonym: "ventral median fissure of medulla" EXACT [FMA:83734] synonym: "ventral median sulcus" EXACT [FMA:83734] xref: BAMS:amf xref: FMA:83734 xref: neuronames:700 xref: SCTID:279288001 xref: Wikipedia:Anterior_median_fissure_of_the_medulla_oblongata is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0003990 name: spinal cord motor column namespace: uberon def: "The subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target." [MP:0009685] subset: pheno_slim is_a: UBERON:0016550 ! spinal cord column [Term] id: UBERON:0003991 name: fourth ventricle median aperture namespace: uberon def: "The large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord." [MP:0009802, Wikipedia:Median_aperture] subset: pheno_slim synonym: "apertura mediana" EXACT OMO:0003011 [FMA:75015, FMA:TA] synonym: "apertura mediana ventriculi quarti" RELATED OMO:0003011 [Wikipedia:Median_aperture] synonym: "arachnoid forament" RELATED [MA:0002947] synonym: "foramen of Magendie" EXACT [FMA:75015] synonym: "foramen of Majendie" EXACT [FMA:75015] synonym: "fourth ventricle median aperture" EXACT [MA:0002947] synonym: "median aperture" BROAD [MP:0009802] synonym: "median aperture of fourth ventricle" EXACT [FMA:75015] xref: BAMS:MA4V xref: BAMS:MAP xref: FMA:75015 xref: MA:0002947 xref: NCIT:C32626 xref: neuronames:641 xref: SCTID:279449001 xref: UMLS:C0152288 {source="ncithesaurus:Foramen_of_Magendie"} xref: Wikipedia:Median_aperture is_a: UBERON:0004668 ! fourth ventricle aperture property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg" xsd:anyURI [Term] id: UBERON:0003992 name: fourth ventricle lateral aperture namespace: uberon def: "One of the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle[MP]." [MP:0009803, Wikipedia:Lateral_aperture] subset: pheno_slim synonym: "apertura lateralis" EXACT OMO:0003011 [FMA:78473, FMA:TA] synonym: "apertura lateralis ventriculi quarti" RELATED OMO:0003011 [Wikipedia:Lateral_aperture] synonym: "foramen of key and retzius" EXACT [FMA:78473] synonym: "foramen of Key-Retzius" EXACT [FMA:78473] synonym: "foramen of Luschka" EXACT [FMA:78473] synonym: "foramen of Retzius" EXACT [FMA:78473] synonym: "forament of Luschka" RELATED [MA:0002946] synonym: "lateral aperture" BROAD [MP:0009803] synonym: "lateral aperture of fourth ventricle" EXACT [FMA:78473] xref: BAMS:LA4V xref: BAMS:LAP xref: FMA:78473 xref: MA:0002946 xref: NCIT:C32625 xref: neuronames:640 xref: SCTID:63426007 xref: UMLS:C0152287 {source="ncithesaurus:Foramen_of_Luschka"} xref: Wikipedia:Lateral_aperture is_a: UBERON:0004668 ! fourth ventricle aperture property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/5/54/Lateral_ventricle.gif" xsd:anyURI [Term] id: UBERON:0003993 name: interventricular foramen of CNS namespace: uberon def: "The paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles." [MP:0009804, Wikipedia:Interventricular_foramina_(neural_anatomy)] subset: pheno_slim synonym: "foramen interventriculare" EXACT OMO:0003011 [Wikipedia:Interventricular_foramina_(neural_anatomy)] synonym: "foramen Monroi" EXACT [Wikipedia:Interventricular_foramina_(neural_anatomy)] synonym: "interventricular foramen" EXACT [FMA:75351] synonym: "interventricular foramina" EXACT [Wikipedia:Interventricular_foramina_(neural_anatomy)] xref: BAMS:IVF xref: BAMS:ivf xref: DHBA:10608 xref: EMAPA:36067 xref: FMA:75351 xref: MBA:124 xref: NCIT:C32627 xref: neuronames:447 xref: SCTID:279248006 xref: UMLS:C0016520 {source="ncithesaurus:Foramen_of_Monroe"} xref: Wikipedia:Interventricular_foramina_(neural_anatomy) relationship: part_of UBERON:0005281 ! ventricular system of central nervous system property_value: UBPROP:0000012 "it is not clear if the FMA class refers to CNS or heart ventricles" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0004001 name: olfactory bulb layer namespace: uberon def: "Missing definition for term UBERON:0004001. Please replace it using linked reference." [MP:0009946] subset: pheno_slim synonym: "cytoarchitectural part of olfactory bulb" EXACT [NLXANAT:20090402] xref: EMAPA:37917 {source="MA:th"} xref: NLXANAT:20090402 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002264 ! olfactory bulb property_value: IAO:0000116 "TODO - check isa parentage" xsd:string [Term] id: UBERON:0004002 name: posterior lobe of cerebellum namespace: uberon def: "The region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure." [MP:0009962] subset: pheno_slim synonym: "cerebellar posterior lobe" EXACT [] synonym: "cerebellum posterior lobe" EXACT [] synonym: "cerebrocerebellum" RELATED [FMA:72252] synonym: "middle lobe-1 of cerebellum" EXACT [FMA:72252] synonym: "posterior cerebellar lobe" EXACT [FMA:72252] synonym: "posterior lobe of cerebellum" EXACT [] synonym: "posterior lobe of the cerebellum" EXACT [BIRNLEX:911] synonym: "posterior lobe-1 of cerebellum" EXACT [FMA:72252] xref: BAMS:PLCb xref: BIRNLEX:911 xref: DHBA:12844 xref: EMAPA:35222 xref: FMA:72252 xref: MA:0002964 xref: neuronames:660 xref: SCTID:279360009 xref: Wikipedia:Posterior_lobe_of_cerebellum is_a: UBERON:0005293 ! cerebellum lobe [Term] id: UBERON:0004003 name: cerebellum hemisphere lobule namespace: uberon def: "The region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres." [MP:0009963] subset: pheno_slim synonym: "cerebellar hemisphere lobule" EXACT [] synonym: "lobule of cerebellar hemisphere" EXACT [FMA:83880] synonym: "lobule of hemisphere of cerebellum" EXACT [FMA:83880] xref: FMA:83880 xref: MA:0002967 xref: NLXANAT:20081201 is_a: UBERON:0004004 ! cerebellum lobule relationship: part_of UBERON:0002245 ! cerebellar hemisphere property_value: IAO:0000116 "TODO - define as a region overlapping the lobule" xsd:string [Term] id: UBERON:0004004 name: cerebellum lobule namespace: uberon def: "One of the the ten gyri of the cerebellar cortex." [MP:0009964] subset: pheno_slim synonym: "lobular parts of the cerebellar cortex" EXACT [BIRNLEX:1084] xref: BIRNLEX:1084 xref: MA:0002966 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0004006 name: cerebellum intermediate zone namespace: uberon alt_id: UBERON:0014342 def: "The paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs." [MP:0009966] subset: pheno_slim synonym: "cerebellar paravermis" EXACT [MP:0009966, NLXANAT:20081236] synonym: "cerebellum intermediate hemisphere" EXACT [MP:0009966] synonym: "intermediate part of spinocerebellum" EXACT [MP:0009966] synonym: "intermediate zone" EXACT [NLXANAT:20081236] synonym: "paleocerebellum" RELATED [Wikipedia:Anatomy_of_the_cerebellum] synonym: "paravermal zone of the cerebellum" RELATED [NeuroNames:2129] synonym: "paravermis" EXACT [MP:0009966] synonym: "spinocerebellum" RELATED [Wikipedia:Cerebellar_hemisphere] xref: EMAPA:37822 {source="MA:th"} xref: HBA:9611 xref: neuronames:2066 xref: neuronames:2129 xref: NLXANAT:20081236 xref: PBA:294021942 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere relationship: part_of UBERON:0014643 ! spinocerebellum [Term] id: UBERON:0004008 name: cerebellar plate namespace: uberon def: "The embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium." [MP:0000856] subset: pheno_slim synonym: "cerebellum plate" EXACT [] synonym: "cerebellum roof plate" RELATED [EHDAA2:0004401] xref: DHBA:12698 xref: EHDAA2:0004401 xref: neuronames:1373 relationship: part_of UBERON:0002037 {source="EHDAA2"} ! cerebellum [Term] id: UBERON:0004009 name: cerebellum posterior vermis namespace: uberon def: "The posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure." [MP:0000869] subset: pheno_slim synonym: "posterior cerebellum vermis" EXACT [] synonym: "posterior lobe vermis" RELATED [FMA:72259] synonym: "vermis lobus posterior" EXACT OMO:0003011 [FMA:72259, FMA:TA] synonym: "vermis of posterior lobe" EXACT [FMA:72259] synonym: "vermis of posterior lobe of cerebellum" EXACT [] synonym: "vermis of the posterior lobe of the cerebellum" EXACT [NLXANAT:20081240] xref: BAMS:VPLb xref: FMA:72259 xref: HBA:4704 xref: MA:0002970 xref: neuronames:673 xref: NLXANAT:20081240 is_a: UBERON:0004720 ! cerebellar vermis relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum [Term] id: UBERON:0004010 name: primary muscle spindle namespace: uberon def: "The sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity." [MP:0000991] subset: pheno_slim is_a: UBERON:0003718 ! muscle spindle [Term] id: UBERON:0004011 name: secondary muscle spindle namespace: uberon def: "The sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity." [MP:0000994] subset: pheno_slim is_a: UBERON:0003718 ! muscle spindle [Term] id: UBERON:0004019 name: baroreceptor namespace: uberon def: "The sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure." [MP:0004118] comment: WP classifies as mechanoreceptor subset: pheno_slim synonym: "baroceptor" RELATED [Wikipedia:Baroreceptor] synonym: "pressoreceptor" RELATED [Wikipedia:Baroreceptor] synonym: "stretch receptor" RELATED [] synonym: "vascular stretch receptor" RELATED [MESH:A08.800.050.800.900.700] xref: EMAPA:36597 xref: FMA:85601 xref: MA:0003009 xref: MESH:D011311 xref: Wikipedia:Baroreceptor is_a: UBERON:0018389 {source="FMA"} ! interoceptor property_value: seeAlso "https://github.com/obophenotype/uberon/issues/510" xsd:anyURI [Term] id: UBERON:0004022 name: germinal neuroepithelium namespace: uberon def: "The single layer of epithelial cells that lines the early neural tube and develops into the nervous system and into the neural crest cells." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0004261] subset: pheno_slim synonym: "germinal neuroepithelial layer" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "germinal neuroepithelium" EXACT [NCBIBook:NBK10047] synonym: "original neural tube" EXACT [NCBIBook:NBK10047] is_a: UBERON:0034706 {source="NCBIBook:NBK10047"} ! proliferating neuroepithelium property_value: UBPROP:0000011 "As the cells adjacent to the lumen continue to divide, the migrating cells form a second layer around the original neural tube. This layer becomes progressively thicker as more cells are added to it from the germinal neuroepithelium. This new layer is called the mantle (or intermediate) zone, and the germinal epithelium is now called the ventricular zone (and, later, the ependyma)[NCBIBook:NBK10047]" xsd:string [Term] id: UBERON:0004023 name: ganglionic eminence namespace: uberon def: "The transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]." [MP:0004274] subset: pheno_slim synonym: "embryonic GE" BROAD OMO:0003000 [] synonym: "embryonic subventricular zone" EXACT [MP:0004274] synonym: "embryonic SVZ" BROAD OMO:0003000 [] synonym: "embryonic/fetal subventricular zone" EXACT [] synonym: "fetal subventricular zone" EXACT [] synonym: "GE" BROAD OMO:0003000 [] synonym: "subependymal layer" EXACT [MP:0004274] synonym: "subventricular zone" BROAD [DHBA:SZ] synonym: "SVZ" BROAD OMO:0003000 [MP:0004274] xref: DHBA:10549 xref: EMAPA:32665 xref: PBA:128012818 xref: Wikipedia:Ganglionic_eminence relationship: part_of UBERON:0001016 ! nervous system property_value: UBPROP:0000011 "contributes significantly in building up the GABAergic cortical cell population[WP]" xsd:string [Term] id: UBERON:0004024 name: medial ganglionic eminence namespace: uberon def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276] subset: pheno_slim synonym: "MGE" BROAD OMO:0003000 [PMID:23375746] xref: DHBA:10550 xref: EMAPA:37471 {source="MA:th"} xref: PBA:128012834 relationship: part_of UBERON:0004023 ! ganglionic eminence [Term] id: UBERON:0004025 name: lateral ganglionic eminence namespace: uberon def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE." [MP:0004277] subset: pheno_slim synonym: "LGE" BROAD OMO:0003000 [PMID:23375746] xref: DHBA:10551 xref: EMAPA:37470 {source="MA:th"} xref: PBA:128012822 relationship: part_of UBERON:0004023 ! ganglionic eminence [Term] id: UBERON:0004026 name: caudal ganglionic eminence namespace: uberon def: "The caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle." [MP:0004278] subset: efo_slim subset: pheno_slim synonym: "CGE" BROAD [] xref: DHBA:10552 xref: EFO:0001911 xref: EMAPA:37469 {source="MA:th"} xref: PBA:128012846 relationship: part_of UBERON:0004023 ! ganglionic eminence [Term] id: UBERON:0004035 name: cortical subplate namespace: uberon def: "The transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate." [https://github.com/obophenotype/mouse-anatomy-ontology/issues/1, MP:0008440, Wikipedia:Subplate] subset: pheno_slim synonym: "cerebral cortex subplate" EXACT [EMAPA:32833] synonym: "SP" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] synonym: "subplate" EXACT [] synonym: "subplate zone" EXACT [DHBA:10522] xref: DHBA:10522 xref: EMAPA:32703 xref: https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png xref: neuronames:3233 xref: PBA:294021932 xref: VO:0011276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Subplate is_a: UBERON:0014950 ! layer of developing cerebral cortex property_value: UBPROP:0000011 "The transient fetal subplate zone, together with the marginal zone and the cortical plate, represents the developmental anlage of the mammalian cerebral cortex. It serves as a waiting compartment for growing cortical afferents; its cells are involved in the establishment of pioneering cortical efferent projections and transient fetal circuitry, and apparently have a number of other developmental roles. The subplate zone is a phylogenetically recent structure and it is most developed in the human brain. Subplate neurons are among the first generated neurons in the mammalian cerebral cortex [1]. These neurons disappear during postnatal development and are important in establishing the correct wiring [2][3] and functional maturation [4] of the cerebral cortex. Subplate neurons appear to be selectively sensitive to injury (such as hypoxia) which in humans are associated with motor and cognitive defects" xsd:string {source="WP"} [Term] id: UBERON:0004040 name: cortical intermediate zone namespace: uberon def: "The region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone." [MP:0008457] subset: pheno_slim synonym: "cerebral cortex mantle layer" RELATED [EMAPA:17545] synonym: "cerebral cortex mantle zone" RELATED [] synonym: "cortical mantle layer" RELATED [] synonym: "IZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] xref: EMAPA:17545 xref: EMAPA:32712 is_a: UBERON:0014950 ! layer of developing cerebral cortex [Term] id: UBERON:0004047 name: basal cistern namespace: uberon def: "The enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa." [MP:0009029] subset: pheno_slim synonym: "cisterna interpeduncularis" RELATED [EMAPA:19056, EMAPA:19149] synonym: "interpeduncular cistern" RELATED [EMAPA:19056, EMAPA:19149, FMA:83718] xref: BAMS:icis xref: BAMS:IPCi xref: EMAPA:19056 xref: FMA:83718 xref: NCIT:C32866 xref: neuronames:2353 xref: Wikipedia:Interpeduncular_cistern is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0004048 name: pontine cistern namespace: uberon def: "The space located on lateral aspects of the pons at the junction with the celebellum." [MP:0009030] subset: pheno_slim synonym: "cisterna pontis" EXACT OMO:0003011 [FMA:83719, FMA:TA] xref: BAMS:pcis xref: BAMS:PoCi xref: EMAPA:18212 xref: FMA:83719 xref: neuronames:556 xref: Wikipedia:Pontine_cistern is_a: UBERON:0004050 ! subarachnoid cistern is_a: UBERON:0005219 ! hindbrain subarachnoid space relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0004049 name: cerebellomedullary cistern namespace: uberon def: "The largest of the subarachnoid cisterns between the cerebellum and the medulla oblongata; it is divided into a posterior cerebellomedullary cistern located between the cerebellum and the posterior surface of the medulla (also called cisterna magna), and a lateral cerebellomedullary cistern located between the cerebellum and the lateral aspect of the medulla." [http://www.drugs.com/dict/cerebellomedullary-cistern.html] subset: pheno_slim synonym: "great cistern" EXACT [FMA:74517] xref: BAMS:cmcis xref: BAMS:GrCi xref: EMAPA:37814 {source="MA:th"} xref: FMA:74517 xref: neuronames:542 is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0004050 name: subarachnoid cistern namespace: uberon def: "The widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain." [MP:0009032, Wikipedia:Cistern_(neuroanatomy)] subset: pheno_slim synonym: "cistern" BROAD [Wikipedia:Cistern_(neuroanatomy)] synonym: "cisterna" BROAD OMO:0003011 [Wikipedia:Cistern_(neuroanatomy)] xref: BAMS:Ci xref: EMAPA:37813 {source="MA:th"} xref: FMA:83717 xref: NCIT:C33640 xref: SCTID:314223007 xref: UMLS:C0228144 {source="ncithesaurus:Subarachnoid_Cistern"} xref: Wikipedia:Cistern_(neuroanatomy) is_a: UBERON:0000315 ! subarachnoid space relationship: part_of UBERON:0001016 ! nervous system property_value: UBPROP:0000012 "in FMA is a subdivision of arachnoid space" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0004051 name: lateral cerebellomedullary cistern namespace: uberon def: "The space between the cerebellum and the lateral aspect of the medulla." [MP:0009034] subset: pheno_slim synonym: "cisterna cerebellomedullaris lateralis" EXACT [MP:0009034] xref: EMAPA:37815 {source="MA:th"} xref: FMA:83722 is_a: UBERON:0004049 ! cerebellomedullary cistern [Term] id: UBERON:0004052 name: quadrigeminal cistern namespace: uberon def: "The enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins." [MP:0009035] subset: pheno_slim synonym: "ambient cistern" EXACT [FMA:74511] synonym: "cistern of great cerebral vein" EXACT [FMA:74511] synonym: "cisterna ambiens" EXACT OMO:0003011 [FMA:74511, FMA:TA] synonym: "cisterna quadrigeminalis" EXACT OMO:0003011 [FMA:74511, FMA:TA] synonym: "cisterna venae magnae cerebri" EXACT OMO:0003011 [FMA:74511, FMA:TA] synonym: "superior cistern" EXACT [FMA:74511] xref: BAMS:scis xref: EMAPA:37817 {source="MA:th"} xref: FMA:74511 xref: NCIT:C33444 xref: neuronames:26 xref: SCTID:56154003 xref: UMLS:C0228150 {source="ncithesaurus:Quadrigeminal_Cistern"} xref: Wikipedia:Cistern_of_great_cerebral_vein is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0004059 name: spinal cord medial motor column namespace: uberon def: "The subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles." [MP:0009686] subset: pheno_slim is_a: UBERON:0003990 ! spinal cord motor column [Term] id: UBERON:0004060 name: neural tube ventricular layer namespace: uberon def: "The layer of undifferentiated, proliferating cells that line the neural tube lumen that is the immediate transformation of the germinal neuroepithelium." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009689] subset: pheno_slim synonym: "ependymal layer" BROAD [NCBIBook:NBK10047] synonym: "neural tube ependymal layer" EXACT [NCBIBook:NBK10047] synonym: "neural tube ependymal zone" NARROW [MP:0009689] synonym: "neural tube ventricular germinal zone" EXACT [NCBIBook:NBK10047] synonym: "neural tube ventricular zone" EXACT [MP:0009689] xref: EMAPA:17152 xref: EMAPA:35362 xref: EMAPA_RETIRED:16783 xref: MA:0003193 is_a: UBERON:0034706 {source="NCBIBook:NBK10047"} ! proliferating neuroepithelium property_value: IAO:0000116 "consider merging with 'ventricular zone'; note that the MA class probably does not belong here, as this is an embryonic structure" xsd:string property_value: UBPROP:0000001 "The layer of undifferentiated, proliferating cells that line the neural tube lumen" xsd:string {source="MP:0009689"} [Term] id: UBERON:0004061 name: neural tube mantle layer namespace: uberon def: "The layer of glia and differentiating neurons that forms as a second layer around the germinal neuroepithium; as this develops it comes to lie between the ventricular and marginal layers and includes the basal and alar plates. Develops into neurons and glia forming a gray matter layer." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009690] subset: pheno_slim synonym: "future brain marginal layer" RELATED [EMAPA:35360] synonym: "neural tube intermediate zone" EXACT [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009690] xref: EMAPA:17148 xref: EMAPA:35360 xref: neuronames:1367 is_a: UBERON:0034707 {source="NCBIBook:NBK10047"} ! differentiating neuroepithelium [Term] id: UBERON:0004063 name: spinal cord alar plate namespace: uberon def: "The region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord." [MP:0009692] subset: pheno_slim synonym: "alar column spinal cord" EXACT [VHOG:0000899] synonym: "spinal cord alar column" EXACT [MP:0009692] synonym: "spinal cord alar lamina" EXACT [MP:0009692] xref: EMAPA:17149 xref: EMAPA:17581 xref: VHOG:0000899 is_a: UBERON:0005882 ! neural tube alar plate relationship: part_of UBERON:0006241 ! future spinal cord property_value: IAO:0000116 "TODO - merge with UBERON:0003054 roof plate?" xsd:string [Term] id: UBERON:0004064 name: neural tube basal plate namespace: uberon def: "The region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009693, Wikipedia:Basal_plate_(neural_tube)] subset: efo_slim subset: pheno_slim synonym: "basal plate" EXACT [] synonym: "basal plate of neural tube" EXACT [Wikipedia:Basal_plate_(neural_tube)] synonym: "motor part of neural tube" RELATED [] synonym: "spinal cord basal plate" NARROW [MP:0009693] synonym: "ventral part of neural tube" RELATED [] xref: AAO:0010561 xref: EFO:0001904 xref: NCIT:C34111 xref: neuronames:1372 xref: UMLS:C1511061 {source="ncithesaurus:Basal_Plate"} xref: Wikipedia:Basal_plate_(neural_tube) relationship: part_of UBERON:0004061 ! neural tube mantle layer [Term] id: UBERON:0004069 name: accessory olfactory bulb namespace: uberon def: "The forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus." [MP:0009945, Wikipedia:Olfactory_bulb#Accessory_olfactory_bulb] comment: Projection notes: Site of termination of vomeronasal nerve; projects to: other parts of pallial amygdala, medial amygdala, subpallial nucleus (Butler and Hodos) subset: pheno_slim synonym: "accessory (vomeronasal) bulb" EXACT [] synonym: "accessory olfactory formation" RELATED [MA:0000966] synonym: "olfactory bulb accessory nucleus" EXACT [NLXANAT:20090453] xref: BAMS:AOB xref: BAMS:AOLB xref: BTO:0004797 xref: DMBA:15957 xref: EMAPA:35106 xref: MA:0000966 xref: MBA:151 xref: neuronames:1565 xref: NLX:53 xref: NLXANAT:20090453 xref: Wikipedia:Olfactory_bulb#Accessory_olfactory_bulb is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb property_value: RO:0002171 UBERON:0002266 {source="ABA"} property_value: RO:0002171 UBERON:0002590 {source="ABA"} property_value: RO:0002171 UBERON:0002893 {source="ABA"} property_value: UBPROP:0000012 "NLXANAT:20090453 appears to be retired" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0004070 name: cerebellum vermis lobule namespace: uberon def: "The region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres." [MP:0009957] subset: pheno_slim synonym: "lobule of vermis" EXACT [FMA:278629] xref: EMAPA:35224 xref: FMA:278629 xref: MA:0002968 xref: NLXANAT:20081223 is_a: UBERON:0004004 ! cerebellum lobule relationship: part_of UBERON:0004720 ! cerebellar vermis property_value: IAO:0000116 "TODO - define as a region overlapping" xsd:string property_value: UBPROP:0000008 "in humans, vermis lobule regions may be nearly continuous with the cerebellar hemisphere lobules dorsally but are separated by deeper longitudinal fissues in the ventral regions; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" xsd:string [Term] id: UBERON:0004073 name: cerebellum interpositus nucleus namespace: uberon alt_id: UBERON:0019281 def: "The nucleus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable." [MP:0009984] subset: pheno_slim synonym: "interposed nucleus" RELATED [Wikipedia:Interposed_nucleus] synonym: "interposed nucleus of cerebellum" EXACT [] synonym: "interposed nucleus of the cerebellum" EXACT [NeuroNames:1243] synonym: "interposed nucleus of the cerebellum" RELATED [NLXANAT:20081242] synonym: "interpositus" RELATED [Wikipedia:Interposed_nucleus] synonym: "interpositus nucleus" RELATED [Wikipedia:Interposed_nucleus] xref: DHBA:12399 xref: DHBA:12613 xref: DMBA:16929 xref: EMAPA:37819 {source="MA:th"} xref: HBA:9578 xref: neuronames:1243 xref: NLXANAT:20081242 xref: Wikipedia:Interposed_nucleus is_a: UBERON:0008995 ! nucleus of cerebellar nuclear complex relationship: part_of UBERON:0002130 {source="NIFSTD"} ! cerebellar nuclear complex property_value: RO:0002161 NCBITaxon:8570 {source="ISBN:0471888893"} property_value: UBPROP:0000001 "The interposed nucleus is a deep nucleus of the cerebellum and is composed of the globose nuclei and the emboliform nuclei. It is located in in the roof (dorsal aspect) of the fourth ventricle, lateral to the fastigial nucleus. It receives its afferent supply from the anterior lobe of the cerebellum and sends output via the superior cerebellar peduncle to the red nucleus." xsd:string {source="Wikipedia:Interposed_nucleus"} property_value: UBPROP:0000009 "modulates muscle stretch reflexes of proximal limb muscles[WP]" xsd:string [Term] id: UBERON:0004074 name: cerebellum vermis lobule I namespace: uberon def: "Missing definition for term UBERON:0004074. Please replace it using linked reference." [MP:0009988] subset: pheno_slim synonym: "lingula" RELATED [MA:0000998] synonym: "lingula (I)" EXACT [ABA:LING] synonym: "lingula (I)" RELATED [BAMS:LING] synonym: "lingula (l)" RELATED [BAMS:LING] synonym: "lingula of anterior cerebellum vermis" EXACT [] synonym: "lingula of cerebellum" EXACT [] synonym: "lingula of vermis" RELATED [FMA:83884] synonym: "lobule I of cerebellum vermis" EXACT [] synonym: "lobule I of vermis" RELATED [FMA:83884] synonym: "neuraxis lingula" EXACT [] synonym: "vermic lobule I" EXACT [NLXANAT:20081224] xref: BAMS:Lg xref: BAMS:LING xref: BIRNLEX:932 xref: EMAPA:35225 xref: FMA:83884 xref: MA:0000998 xref: MBA:912 xref: neuronames:657 xref: NLXANAT:20081224 xref: SCTID:279380005 xref: SCTID:77232000 xref: Wikipedia:Lingula_of_cerebellum is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003941 ! cerebellum anterior vermis property_value: IAO:0000116 "TODO FMA:61904 lingual gyrus FMA:71032 lingula gyrus (lg)" xsd:string [Term] id: UBERON:0004075 name: cerebellum vermis lobule II namespace: uberon def: "Missing definition for term UBERON:0004075. Please replace it using linked reference." [MP:0009989] subset: pheno_slim synonym: "central lobule" BROAD [MA:0000999] synonym: "central lobule of cerebellum" BROAD [] synonym: "lobule II" EXACT [ABA:CENT2] synonym: "lobule II of cerebellum vermis" EXACT [] synonym: "vermic lobule II" EXACT [NLXANAT:20081225] xref: EMAPA:35226 xref: FMA:278635 xref: MA:0000999 xref: MBA:976 xref: neuronames:1054 xref: NLXANAT:20081225 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule relationship: part_of UBERON:0003941 {source="MA"} ! cerebellum anterior vermis property_value: UBPROP:0000012 "central vs alar central? II and III? part_of CENT in ABA" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0004076 name: cerebellum vermis lobule III namespace: uberon def: "Missing definition for term UBERON:0004076. Please replace it using linked reference." [MP:0009990] subset: pheno_slim synonym: "central lobule" BROAD [MA:0001000] synonym: "central lobule of cerebellum" BROAD [] synonym: "lobule III" EXACT [ABA:CENT3] synonym: "lobule III of cerebellum vermis" EXACT [] synonym: "vermic lobule III" EXACT [NLXANAT:20081226] xref: DHBA:12841 xref: EMAPA:35227 xref: FMA:278639 xref: HBA:12933 xref: MA:0001000 xref: MBA:984 xref: neuronames:1844 xref: NLXANAT:20081226 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule relationship: part_of UBERON:0003941 ! cerebellum anterior vermis property_value: IAO:0000116 "II or III?" xsd:string [Term] id: UBERON:0004077 name: cerebellum vermis lobule IV namespace: uberon subset: pheno_slim synonym: "culmen of cerebellum" BROAD [] synonym: "lobule IV of cerebellum vermis" EXACT [] synonym: "neuraxis culmen" BROAD [FMA:83886] synonym: "vermic lobule IV" EXACT [NLXANAT:20081227] xref: DHBA:12842 xref: EMAPA:35228 xref: HBA:12934 xref: MA:0001001 xref: MBA:992 xref: NLXANAT:20081227 xref: Wikipedia:Culmen_(cerebellum) is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum vermis culmen property_value: RO:0002171 UBERON:0003021 {source="ABA"} [Term] id: UBERON:0004078 name: cerebellum vermis lobule IX namespace: uberon def: "The uvula (uvular lobe) forms a considerable portion of the inferior vermis; it is separated on either side from the tonsil by the sulcus valleculC&, at the bottom of which it is connected to the tonsil by a ridge of gray matter, indented on its surface by shallow furrows, and hence called the furrowed band." [Wikipedia:Uvula_of_cerebellum] comment: The uvula is the second largest lobule, following the culmen. It pertains to the paleocerebellum and is separated from the nodule by the posterolateral fissure. subset: pheno_slim synonym: "cerebellar posterior vermis lobule IX" EXACT [PMID:2022820] synonym: "lobule IX of cerebellar posterior vermis" EXACT [PMID:2022820] synonym: "lobule IX of cerebellum vermis" EXACT [] synonym: "lobule IX of vermis" RELATED [FMA:83883] synonym: "neuraxis uvula" EXACT [FMA:83883] synonym: "uvula (IX)" EXACT [ABA:UVU] synonym: "uvula [vermis]" EXACT [] synonym: "uvula cerebellum" RELATED [BAMS:Uvu] synonym: "uvula of cerebellum" EXACT [FMA:83883] synonym: "uvula of vermis of cerebellum" EXACT [] synonym: "vermic lobule IX" EXACT [NLXANAT:20081234] xref: BAMS:UVU xref: BAMS:Uvu xref: DHBA:12851 xref: EMAPA:35229 xref: FMA:83883 xref: HBA:12943 xref: MA:0001006 xref: MBA:957 xref: neuronames:678 xref: NLXANAT:20081234 xref: Wikipedia:Uvula_of_cerebellum is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe [Term] id: UBERON:0004079 name: cerebellum vermis lobule V namespace: uberon def: "Missing definition for term UBERON:0004079. Please replace it using linked reference." [MP:0009993] subset: pheno_slim synonym: "culmen" BROAD [MA:0001002] synonym: "culmen of cerebellum" BROAD [] synonym: "lobule V" EXACT [ABA:CUL5] synonym: "lobule V (culmen and quadrangular lobule, posterior part)" EXACT [DHBA:CbV] synonym: "lobule V of cerebellum vermis" EXACT [] synonym: "neuraxis culmen" BROAD [FMA:83886] synonym: "vermic lobule V" EXACT [NLXANAT:20081228] xref: BAMS:CUL xref: BAMS:Cul xref: DHBA:12843 xref: EMAPA:35230 xref: HBA:12935 xref: MA:0001002 xref: MBA:1001 xref: neuronames:1766 xref: NLXANAT:20081228 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum vermis culmen [Term] id: UBERON:0004080 name: cerebellum vermis lobule VI namespace: uberon alt_id: UBERON:0000909 def: "Missing definition for term UBERON:0004080. Please replace it using linked reference." [MP:0009994] subset: pheno_slim synonym: "declive" BROAD [MA:0001003] synonym: "declive (VI)" EXACT [ABA:DEC] synonym: "declive lobule" BROAD [MP:0009994] synonym: "declive of cerebellum" EXACT [] synonym: "declive of vermis" RELATED [FMA:83887] synonym: "declive of vermis of cerebellum" EXACT [] synonym: "lobule VI (declive and simplex lobule)" EXACT [DHBA:CbVI] synonym: "lobule VI of cerebellum vermis" EXACT [] synonym: "lobule VI of vermis" RELATED [FMA:83887] synonym: "neuraxis declive" EXACT [FMA:83887] synonym: "vermic lobule vi" EXACT [NLXANAT:20081229] xref: BAMS:DEC xref: DHBA:12845 xref: EMAPA:35231 xref: FMA:83887 xref: HBA:12937 xref: MA:0001003 xref: MBA:936 xref: neuronames:674 xref: NLXANAT:20081229 xref: SCTID:279385000 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0004009 {source="MP"} ! cerebellum posterior vermis [Term] id: UBERON:0004081 name: cerebellum vermis lobule VII namespace: uberon subset: pheno_slim synonym: "folium-tuber vermis (VII)" EXACT [ABA:FOTU] synonym: "lobule VII of cerebellum vermis" EXACT [] synonym: "lobule VIIA of vermis" RELATED [FMA:83889] synonym: "vermic lobule VII" EXACT [NLXANAT:20081230] xref: BAMS:FOTU xref: EMAPA:35232 xref: FMA:278651 xref: MA:0001004 xref: MBA:944 xref: neuronames:2464 xref: NLXANAT:20081230 xref: SCTID:369044003 xref: Wikipedia:Folium_(vermis) is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0004009 ! cerebellum posterior vermis property_value: UBPROP:0000008 "comment: In rodents, vermis lobule VII is a single structure. In humans, it is cleft by the horizontal fissure into distinct folium (VIIa) and tuber (VIIb) lobules.[MP]" xsd:string property_value: UBPROP:0000012 "check MA, MP, FMA, folium? may need to form a separate class" xsd:string {external_ontology="MA"} [Term] id: UBERON:0004082 name: cerebellum vermis lobule VIII namespace: uberon alt_id: UBERON:0002312 def: "Missing definition for term UBERON:0004082. Please replace it using linked reference." [MP:0009996] subset: pheno_slim synonym: "cerebellum lobule VIII" EXACT [] synonym: "lobule VIII of cerebellum vermis" EXACT [] synonym: "lobule VIII of vermis" RELATED [FMA:83888] synonym: "neuraxis pyramis" EXACT [] synonym: "neuraxis pyramus" EXACT [] synonym: "pyramis" EXACT [NLXANAT:20081233] synonym: "pyramis of vermis of cerebellum" EXACT [FMA:83888] synonym: "pyramus" BROAD [MA:0001005] synonym: "pyramus" RELATED [] synonym: "pyramus (VIII)" EXACT [ABA:PYR] synonym: "pyramus of cerebellum" EXACT [] synonym: "pyramus of vermis of cerebellum" EXACT [FMA:83888] synonym: "vermic lobule VIII" EXACT [NLXANAT:20081233] xref: BAMS:PYR xref: EMAPA:35233 xref: FMA:83888 xref: MA:0001005 xref: MBA:951 xref: neuronames:677 xref: NLXANAT:20081233 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0004009 ! cerebellum posterior vermis [Term] id: UBERON:0004083 name: cerebellum vermis lobule X namespace: uberon def: "Missing definition for term UBERON:0004083. Please replace it using linked reference." [MP:0009997] subset: pheno_slim synonym: "lobule X of cerebellum vermis" EXACT [] synonym: "lobule X of vermis of cerebellum" RELATED [FMA:83882] synonym: "neuraxis nodule" EXACT [UBERON:cjm] synonym: "neuraxis nodulus" EXACT [] synonym: "nodule" BROAD [NeuroNames:681] synonym: "nodulus" BROAD [MA:0001007, neuronames:681] synonym: "nodulus" RELATED [NLXANAT:20081235] synonym: "nodulus (X)" EXACT [ABA:NOD] synonym: "nodulus of cerebellum" EXACT [] synonym: "nodulus of vermis of cerebellum" EXACT [] synonym: "vermic lobule X" EXACT [NLXANAT:20081235] xref: BAMS:NOD xref: BIRNLEX:1165 xref: EMAPA:35234 xref: FMA:83882 xref: HBA:4713 xref: MA:0001007 xref: MBA:968 xref: neuronames:681 xref: NLXANAT:20081235 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe [Term] id: UBERON:0004086 name: brain ventricle namespace: uberon def: "One of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid." [https://github.com/obophenotype/uberon/issues/300] subset: efo_slim subset: human_reference_atlas subset: pheno_slim synonym: "brain ventricles" EXACT OMO:0003004 [] synonym: "cerebral ventricle" EXACT [HP:0002118] synonym: "region of ventricular system of brain" EXACT [FMA:78447] xref: BIRNLEX:1356 xref: BTO:0001442 xref: EFO:0001914 xref: EMAPA:32674 xref: FMA:78447 xref: HBA:9418 xref: MA:0000818 xref: MESH:D002552 xref: NCIT:C12356 xref: neuronames:2497 xref: SCTID:180929003 xref: UMLS:C0007799 {source="ncithesaurus:Ventricle_Brain"} is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0005358 ! ventricle of nervous system relationship: part_of UBERON:0005282 ! ventricular system of brain property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct[BIRNLEX:1356]." xsd:string {source="BIRNLEX:1356"} property_value: UBPROP:0000012 "FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The latter is a cavity, and part of the former, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0004116 name: nerve of tympanic cavity namespace: uberon def: "A nerve that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic] synonym: "middle ear cavity nerve" EXACT [OBOL:automatic] synonym: "nerve of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "nerve of cavity of middle ear" EXACT [OBOL:automatic] synonym: "nerve of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "nerve of middle ear cavity" EXACT [OBOL:automatic] synonym: "tympanic cavity nerve" EXACT [] synonym: "tympanic cavity nerves" EXACT [MA:0001222] xref: EMAPA:37777 {source="MA:th"} xref: MA:0001222 is_a: UBERON:0011779 ! nerve of head region [Term] id: UBERON:0004130 name: cerebellar layer namespace: uberon def: "A cortical cell layer of the cerebellum. Examples: the granular (inner+outer) layer, molecular layer, Purkinje cell layer, and the ventricular layer of the embryo." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum] subset: pheno_slim synonym: "cell layer of cerebellar cortex" EXACT [] synonym: "cytoarchitectural part of the cerebellar cortex" EXACT [BIRNLEX:880] synonym: "gray matter layer of cerebellum" EXACT [FMA:83141] synonym: "layer of cerebellar cortex" EXACT [] synonym: "layer of cerebellum" EXACT [] xref: BIRNLEX:880 xref: EMAPA:35212 xref: FMA:83141 xref: MA:0000201 xref: NCIT:C49137 xref: SCTID:360478008 xref: UMLS:C1707522 {source="ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum"} is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 ! central nervous system gray matter layer relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0004132 name: trigeminal sensory nucleus namespace: uberon def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]." [Wikipedia:Trigeminal_nuclei] subset: vertebrate_core synonym: "sensory trigeminal nuclei" EXACT OMO:0003004 [TAO:0000433] synonym: "sensory trigeminal nucleus" EXACT [ZFA:0000433] synonym: "sensory trigeminal V nucleus" EXACT [] synonym: "trigeminal sensory nucleus" EXACT [GO:0021730] synonym: "trigeminal V sensory nucleus" EXACT [MA:0001030] xref: EMAPA:35884 xref: MA:0001030 xref: SCTID:280170001 xref: TAO:0000433 xref: VHOG:0001356 xref: Wikipedia:Trigeminal_nuclei xref: ZFA:0000433 is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0002925 ! trigeminal nucleus relationship: part_of UBERON:0002925 {source="MA"} ! trigeminal nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: IAO:0000116 "TODO - check ZFA link. note this is part of medulla in ZFA, but we do not include this link here as it leads to inconsistencies" xsd:string [Term] id: UBERON:0004133 name: salivatory nucleus namespace: uberon def: "Missing definition for term UBERON:0004133. Please replace it using linked reference." [GO:0021751] synonym: "salivary nucleus" EXACT [GO:0021751] is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0004166 name: superior reticular formation namespace: uberon def: "Missing definition for term UBERON:0004166. Please replace it using linked reference." [GO:0021729, GO_REF:0000021] is_a: UBERON:0007245 {source="https://orcid.org/0000-0002-6601-2165"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="GO"} ! medullary reticular formation property_value: IAO:0000116 "check ZFA structures superior reticular formation medial column & tegmentum" xsd:string [Term] id: UBERON:0004167 name: orbitofrontal cortex namespace: uberon def: "The region of the cerebral cortex covering the basal surface of the frontal lobes; this region normally controls emotion and decision making." [GO:0021769, MGI:csmith, MP:0004170] subset: efo_slim subset: pheno_slim synonym: "fronto-orbital cortex" EXACT [] synonym: "orbital frontal cortex" EXACT [BIRNLEX:1049, DHB:OFC] synonym: "orbito-frontal cortex" EXACT [] synonym: "segment of cortex of frontal lobe" RELATED [FMA:242003] xref: BIRNLEX:1049 xref: DHBA:10194 xref: EFO:0001990 xref: FMA:242003 xref: neuronames:91 xref: UMLS:C0152301 {source="BIRNLEX:1049"} xref: Wikipedia:Orbitofrontal_cortex is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0000349 {source="FMA", source="MP"} ! limbic system relationship: part_of UBERON:0001870 {source="GO", source="MP"} ! frontal cortex property_value: UBPROP:0000012 "this is a gyrus in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0004170 name: spinal cord ventral commissure namespace: uberon def: "The band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure[MP]. The anterior (or ventral) white commissure, also known as the alba anterior medullae spinalis, is a bundle of nerve fibers which cross the midline of the spinal cord just anterior to the gray commissure. A N4 fibers and C fibers carrying pain sensation in the spinothalamic tract contribute to this commissure, as do fibers of the anterior corticospinal tract, which carry motor signals from the primary motor cortex[WP]." [GO:0021965, MP:0009695, Wikipedia:Anterior_white_commissure] subset: pheno_slim synonym: "alba anterior medullae spinalis" RELATED OMO:0003011 [Wikipedia:Anterior_white_commissure] synonym: "anterior commissure" RELATED INCONSISTENT [MP:0009695] synonym: "anterior white commissure" EXACT [MP:0009695] synonym: "anterior white commissure of spinal cord" EXACT [FMA:77035] synonym: "commissura alba anterior medullae spinalis" RELATED OMO:0003011 [Wikipedia:Anterior_white_commissure] synonym: "spinal cord anterior commissure" EXACT [MP:0009695] synonym: "ventral commissure of the spinal cord" RELATED [BAMS:vc] synonym: "ventral spinal commissure" EXACT [MP:0009695] synonym: "ventral white column" EXACT [MP:0009695] synonym: "ventral white commissure of spinal cord" EXACT [FMA:77035] synonym: "white commissure" RELATED [MP:0009695] xref: BAMS:vc xref: EMAPA:37956 {source="MA:th"} xref: FMA:77035 xref: MBA:858 xref: NCIT:C33890 xref: neuronames:1641 xref: SCTID:424149007 xref: UMLS:C1520137 {source="ncithesaurus:White_Commissure"} xref: Wikipedia:Anterior_white_commissure is_a: UBERON:0007838 {source="FMA"} ! spinal cord white commissure property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray664.png" xsd:anyURI [Term] id: UBERON:0004171 name: trigeminothalamic tract namespace: uberon def: "The trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face." [GO:0021974] synonym: "tractus trigeminothalamicus" EXACT OMO:0003011 [FMA:83852, FMA:TA] synonym: "trigeminal tract" RELATED [BIRNLEX:4097] xref: BAMS:tth xref: BIRNLEX:4097 xref: DHBA:12797 xref: FMA:83852 xref: neuronames:1572 xref: Wikipedia:Anterior_trigeminothalamic_tract is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0004172 name: pons reticulospinal tract namespace: uberon def: "Axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord." [GO:0021975] xref: SCTID:362404001 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0004173 name: medulla reticulospinal tract namespace: uberon def: "Axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord[GO]." [GO:0021976] synonym: "medullary reticulospinal tract" EXACT [FMA:73989] xref: FMA:73989 xref: neuronames:2838 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0004186 name: olfactory bulb mitral cell layer namespace: uberon def: "The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer." [GO:0061034] subset: pheno_slim synonym: "mitral cell body layer" EXACT [NLXANAT:100201] synonym: "mitral cell layer" EXACT [BTO:0001108] synonym: "mitral cell layer of the olfactory bulb" RELATED [BAMS:Mi] synonym: "OB mitral cell layer" EXACT [DMBA:OB] synonym: "olfactory bulb main mitral cell body layer" RELATED [NLXANAT:100201] xref: BAMS:Mi xref: BTO:0001108 xref: DHBA:11329 xref: DMBA:15912 xref: EMAPA:35611 xref: MA:0000973 xref: NLXANAT:100201 is_a: UBERON:0004001 ! olfactory bulb layer property_value: UBPROP:0000012 "NIF divides this into main and accessory" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0004214 name: upper leg nerve namespace: uberon def: "A nerve that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb stylopod nerve" EXACT [OBOL:automatic] synonym: "hindlimb stylopod nerve" EXACT [OBOL:automatic] synonym: "lower extremity stylopod nerve" EXACT [OBOL:automatic] synonym: "thigh RELATED" EXACT [OBOL:automatic] xref: EMAPA:37344 {source="MA:th"} xref: MA:0000685 is_a: UBERON:0003431 ! leg nerve [Term] id: UBERON:0004215 name: back nerve namespace: uberon def: "A nerve that is part of a back [Automatically generated definition]." [OBOL:automatic] synonym: "nerve of back" EXACT [OBOL:automatic] xref: EMAPA:37268 {source="MA:th"} xref: MA:0000497 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0004216 name: lower arm nerve namespace: uberon def: "A nerve that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37338 {source="MA:th"} xref: MA:0000601 is_a: UBERON:0003433 ! arm nerve [Term] id: UBERON:0004217 name: upper arm nerve namespace: uberon def: "A nerve that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37337 {source="MA:th"} xref: MA:0000607 is_a: UBERON:0003433 ! arm nerve [Term] id: UBERON:0004218 name: lower leg nerve namespace: uberon def: "A nerve that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37345 {source="MA:th"} xref: MA:0000679 is_a: UBERON:0003431 ! leg nerve [Term] id: UBERON:0004274 name: lateral ventricle choroid plexus epithelium namespace: uberon def: "A choroid plexus epithelium that is part of a lateral ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "lateral ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: EHDAA2:0004450 xref: FMA:242815 xref: MA:0000962 xref: NCIT:C49248 xref: UMLS:C1711323 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle"} is_a: UBERON:0003911 ! choroid plexus epithelium relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle [Term] id: UBERON:0004275 name: third ventricle choroid plexus epithelium namespace: uberon def: "A choroid plexus epithelium that is part of a third ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of third ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of third ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of third ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of third ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of third ventricle" EXACT [OBOL:automatic] synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "third ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "third ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: EMAPA:37055 {source="MA:th"} xref: FMA:242821 xref: MA:0000880 is_a: UBERON:0003911 ! choroid plexus epithelium relationship: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle [Term] id: UBERON:0004276 name: fourth ventricle choroid plexus epithelium namespace: uberon def: "A choroid plexus epithelium that is part of a fourth ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of fourth ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "fourth ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: FMA:242823 xref: MA:0000984 xref: NCIT:C49230 xref: UMLS:C1707392 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle"} is_a: UBERON:0003911 ! choroid plexus epithelium relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0004293 name: parasympathetic nerve namespace: uberon def: "A nerve that is part of a parasympathetic nervous system [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic] xref: EHDAA2:0001401 xref: EMAPA:17271 xref: MA:0000224 xref: SCTID:276146002 xref: VHOG:0000641 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000011 ! parasympathetic nervous system property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004295 name: sympathetic nerve trunk namespace: uberon def: "A nerve trunk that is part of a sympathetic nervous system [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "sympathetic nervous system nerve trunk" EXACT [OBOL:automatic] xref: EHDAA2:0001970 xref: EMAPA:35845 xref: MA:0000227 is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0004545 name: external capsule of telencephalon namespace: uberon def: "Any of the series of white matter fiber tracts in the brain that run between the most lateral segment of the lentiform nucleus and the claustrum; the white matter of the external capsule contains fibers known as corticocortical association fibers which are responsible for connecting the cerebral cortex to another cortical area; the capsule appears as a thin white sheet of white matter and provides a route for cholinergic fibers from the basal forebrain to the cerebral cortex; it eventually joins the internal capsule around the lentiform nucleus." [MP:0020139] synonym: "brain external capsule" BROAD [MP:0020139] synonym: "capsula externa" RELATED OMO:0003011 [Wikipedia:External_capsule] synonym: "corpus callosum external capsule" RELATED [BAMS:ec] synonym: "external capsule" BROAD [MA:0002896] xref: BAMS:EC xref: BAMS:ec xref: DHBA:10573 xref: DMBA:17765 xref: EMAPA:35331 xref: FMA:61959 xref: HBA:9243 xref: MA:0002896 xref: MBA:579 xref: NCIT:C32550 xref: neuronames:253 xref: NLXANAT:1010013 xref: SCTID:279300007 xref: UMLS:C0152345 {source="ncithesaurus:External_Capsule"} xref: Wikipedia:External_capsule is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg" xsd:anyURI [Term] id: UBERON:0004642 name: third ventricle ependyma namespace: uberon def: "An ependyma that is part of a third ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "3rd ventricle ependyma" EXACT [MA:0000882] synonym: "ependyma of third ventricle" EXACT [MA:0000882] xref: EMAPA:35100 xref: FMA:242833 xref: MA:0000882 xref: SCTID:362316006 is_a: UBERON:0005357 ! brain ependyma relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0004643 name: lateral ventricle ependyma namespace: uberon def: "An ependyma that is part of a lateral ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "ependyma of lateral ventricle" EXACT [FMA:242825] xref: EMAPA:35488 xref: FMA:242825 xref: MA:0000964 xref: NCIT:C49249 xref: SCTID:369275002 xref: UMLS:C0228162 {source="ncithesaurus:Lateral_Ventricle_Ependyma"} is_a: UBERON:0005357 ! brain ependyma relationship: part_of UBERON:0002285 ! telencephalic ventricle [Term] id: UBERON:0004644 name: fourth ventricle ependyma namespace: uberon def: "An ependyma that is part of a fourth ventricle [Automatically generated definition]." [OBOL:automatic] synonym: "4th ventricle ependyma" RELATED [MA:0000986] synonym: "ependyma of fourth ventricle" EXACT [FMA:242835] xref: EMAPA:35355 xref: FMA:242835 xref: MA:0000986 xref: NCIT:C49232 xref: SCTID:369277005 xref: UMLS:C0228171 {source="ncithesaurus:Fourth_Ventricle_Ependyma"} is_a: UBERON:0005357 ! brain ependyma relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0004668 name: fourth ventricle aperture namespace: uberon def: "One of: the 4th ventricle median or lateral apertures." [https://orcid.org/0000-0002-6601-2165] synonym: "aperture of 4th ventricle" EXACT [] synonym: "aperture of fourth ventricle" EXACT [FMA:242766] xref: FMA:242766 xref: MA:0002945 relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0004670 name: ependyma namespace: uberon def: "The thin epithelium-like membrane composed of ependymal cells that lines the ventricular system of the brain and the spinal cord." [http://orcid.org/0000-0002-6601-2165, ISBN:0387949542, Wikipedia:Ependyma] subset: pheno_slim synonym: "ependyma of neuraxis" EXACT [FMA:242791] synonym: "ependymal epithelium" EXACT [BTO:0000401] synonym: "lamina epithelialis" RELATED [FMA:242791] xref: BTO:0000401 xref: EMAPA:37865 {source="MA:th"} xref: FMA:242791 xref: GAID:608 xref: MESH:D004805 xref: NCIT:C13078 xref: neuronames:1856 xref: SCTID:12766003 xref: UMLS:C0014472 {source="ncithesaurus:Ependyma"} xref: Wikipedia:Ependyma relationship: part_of UBERON:0005358 ! ventricle of nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray667.png" xsd:anyURI property_value: RO:0002171 GO:0005604 property_value: UBPROP:0000007 "ependymal" xsd:string property_value: UBPROP:0000010 "unlike other epithelia, there is no basement membrane under the ependymal epithelium[ISBN:0387949542]" xsd:string property_value: UBPROP:0000012 "FMA breaks ependyma into ependyma proper (a subdivsion of epithelium) and epithelium of choroid plexus" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0004671 name: gyrus rectus namespace: uberon def: "The portion of the frontal lobe medial to the medial orbital gyrus is named the gyrus rectus (or straight gyrus), and is continuous with the superior frontal gyrus on the medial surface. A specific function for the gyrus rectus has not yet been elucidated." [Wikipedia:Straight_gyrus] subset: human_reference_atlas synonym: "gyrus rectus" EXACT [BIRNLEX:1103] synonym: "medial part of gyri orbitales" EXACT [FMA:61893] synonym: "rectal gyrus" EXACT [FMA:61893] synonym: "rectus gyrus" EXACT [FMA:61893] synonym: "straight gyrus" EXACT [FMA:61893] synonym: "ventromedial gyrus" RELATED [NeuroNames:94] xref: BAMS:GRe xref: BIRNLEX:1103 xref: FMA:61893 xref: HBA:4047 xref: neuronames:94 {source="BIRNLEX:1103"} xref: SCTID:279206004 xref: UMLS:C0152300 {source="BIRNLEX:1103"} xref: Wikipedia:Straight_gyrus is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0016525 {source="FMA"} ! frontal lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004672 name: posterior horn lateral ventricle namespace: uberon def: "Part of the lateral ventricle that extends posteriorly into the occipital lobe." [BIRNLEX:1297] subset: human_reference_atlas synonym: "cornu occipitale (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83700, FMA:TA] synonym: "cornu occipitale ventriculi lateralis" EXACT OMO:0003011 [FMA:83700, FMA:TA] synonym: "cornu posterius (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83700, FMA:TA] synonym: "cornu posterius ventriculi lateralis" EXACT OMO:0003011 [FMA:83700, FMA:TA] synonym: "occipital horn" EXACT [BIRNLEX:1297] synonym: "occipital horn of lateral ventricle" EXACT [FMA:83700] synonym: "posterior horn lateral ventricle" EXACT [BIRNLEX:1297] synonym: "posterior horn of lateral ventricle" EXACT [FMA:83700] synonym: "posterior horn of the lateral ventricle" EXACT [BIRNLEX:1297] synonym: "ventriculus lateralis, cornu occipitale" EXACT OMO:0003011 [FMA:83700, FMA:TA] synonym: "ventriculus lateralis, cornu posterius" EXACT OMO:0003011 [FMA:83700, FMA:TA] xref: BAMS:OLV xref: BIRNLEX:1297 xref: DHBA:10599 xref: EMAPA:17772 xref: FMA:83700 xref: NCIT:C33195 xref: neuronames:223 xref: SCTID:362314009 xref: UMLS:C0152282 {source="ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle", source="BIRNLEX:1297"} xref: Wikipedia:Posterior_horn_of_lateral_ventricle is_a: UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004673 name: trigeminal nerve root namespace: uberon def: "A nerve root that extends_fibers_into a trigeminal nerve." [OBOL:automatic] synonym: "descending trigeminal root" RELATED [TAO:0000192] synonym: "radix descendens nervi trigemini" EXACT OMO:0003011 [ZFA:0000192] synonym: "root of trigeminal nerve" EXACT [FMA:52610] synonym: "root of trigeminal V nerve" EXACT [Obol:cjm] synonym: "trigeminal nerve root" EXACT [BIRNLEX:1346] synonym: "trigeminal neural root" EXACT [FMA:52610] xref: BIRNLEX:1346 xref: DHBA:12865 xref: DMBA:17739 xref: FMA:52610 xref: SCTID:280185007 xref: TAO:0000192 xref: ZFA:0000192 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: part_of UBERON:0001895 ! metencephalon property_value: IAO:0000116 "TODO - check ZFA" xsd:string [Term] id: UBERON:0004674 name: facial nerve root namespace: uberon def: "A nerve root that extends_fibers_into a facial nerve." [OBOL:automatic] synonym: "central part of facial nerve" EXACT [FMA:53418] synonym: "facial nerve fibers" EXACT [FMA:53418] synonym: "facial nerve or its root" RELATED [BAMS:7n] synonym: "facial nerve root" EXACT [BIRNLEX:1513] synonym: "facial nerve/root" RELATED [BAMS:7n] synonym: "facial neural root" EXACT [FMA:53418] synonym: "fibrae nervi facialis" EXACT OMO:0003011 [FMA:53418, FMA:TA] synonym: "root of facial nerve" EXACT [FMA:53418] xref: BAMS:7n xref: BAMS:7nf xref: BIRNLEX:1513 xref: DHBA:12862 xref: DMBA:17742 xref: FMA:53418 xref: neuronames:579 xref: SCTID:280186008 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0004675 name: hypoglossal nerve root namespace: uberon alt_id: UBERON:0022760 def: "A nerve root that extends_fibers_into a hypoglossal nerve." [OBOL:automatic] synonym: "central part of hypoglossal nerve" EXACT [FMA:72632] synonym: "central part of hypoglossal nerve" RELATED [BIRNLEX:1288] synonym: "fibrae nervi hypoglossi" EXACT OMO:0003011 [FMA:72632, FMA:TA] synonym: "hypoglossal nerve fiber bundle" EXACT HUMAN_PREFERRED [BIRNLEX:1288] synonym: "hypoglossal nerve fibers" EXACT [FMA:72632] synonym: "hypoglossal nerve fibers" RELATED [BIRNLEX:1288] synonym: "hypoglossal nerve root" EXACT [BIRNLEX:1588] synonym: "hypoglossal nerve tract" EXACT [FMA:72632] synonym: "hypoglossal nerve/ root" RELATED [BAMS:12n] synonym: "root of hypoglossal nerve" EXACT [FMA:72632] synonym: "root of hypoglossal nerve" RELATED [BIRNLEX:1288] xref: BAMS:12n xref: BAMS:12nf xref: BIRNLEX:1288 xref: BIRNLEX:1588 xref: DHBA:12886 xref: DMBA:17750 xref: FMA:72632 xref: neuronames:798 xref: UMLS:C0175555 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0004676 name: spinal cord lateral horn namespace: uberon def: "A triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]." [Wikipedia:Lateral_horn_of_spinal_cord] synonym: "columna grisea intermedia medullare spinalis" EXACT OMO:0003011 [FMA:256536, FMA:TA] synonym: "cornu laterale medullae spinalis" RELATED OMO:0003011 [Wikipedia:Lateral_horn_of_spinal_cord] synonym: "intermediate gray column of spinal cord" EXACT [FMA:256536] synonym: "intermediate grey column of spinal cord" RELATED [FMA:256536] synonym: "lateral gray column of spinal cord" EXACT [FMA:256536] synonym: "lateral gray horn" EXACT [BIRNLEX:2666] synonym: "lateral gray matter of spinal cord" EXACT [FMA:256536] synonym: "lateral horn of spinal cord" EXACT [FMA:256536] synonym: "spinal cord intermediate horn" EXACT [BIRNLEX:2666] synonym: "spinal cord lateral horn" EXACT [BIRNLEX:2666] xref: BIRNLEX:2666 xref: FMA:256536 xref: MA:0001118 xref: MESH:D066152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32938 xref: UMLS:C0228567 {source="BIRNLEX:2666"} xref: UMLS:C0228582 {source="ncithesaurus:Lateral_Horn_of_the_Spinal_Cord"} xref: Wikipedia:Lateral_horn_of_spinal_cord is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0002315 {source="FMA"} ! gray matter of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray675.png" xsd:anyURI property_value: IAO:0000116 "TODO - check relationship to spinal cord lateral column. in FMA funiculus=white and horn=grep" xsd:string [Term] id: UBERON:0004677 name: spinal cord gray commissure namespace: uberon def: "The band of grey substance spanning the midline of the spinal cord that surrounds the central canal." [ISBN:0-683-40008-8, MP:0009696] subset: pheno_slim synonym: "area spinalis X" EXACT OMO:0003011 [FMA:68871, FMA:TA] synonym: "central gelatinous substance" RELATED [NeuroNames:1649] synonym: "central glial substance" RELATED [NeuroNames:1649] synonym: "commissura grisea anaterior medullae spinalis" RELATED OMO:0003011 [Wikipedia:Gray_commissure] synonym: "commissura grisea posterior medulla spinalis" RELATED OMO:0003011 [Wikipedia:Gray_commissure] synonym: "gray commissure of spinal cord" EXACT [FMA:77036] synonym: "grey commissure" RELATED [FMA:77036] synonym: "grey commissure of spinal cord" RELATED [FMA:77036] synonym: "lamina 10" RELATED OMO:0003011 [NeuroNames:1702] synonym: "lamina spinalis X" RELATED OMO:0003011 [NeuroNames:1649, NeuroNames:1702] synonym: "lamina X" EXACT [] synonym: "lamina X" RELATED [NeuroNames:1649, NeuroNames:1702] synonym: "lamina X of gray matter of spinal cord" EXACT [FMA:68871] synonym: "rexed lamina X" EXACT [FMA:68871] synonym: "Rexed's lamina X" RELATED [NeuroNames:1649, NeuroNames:1702] synonym: "spinal area X" EXACT [FMA:68871] synonym: "spinal cord gray commissure" EXACT [BIRNLEX:2669] synonym: "spinal cord grey commissure" EXACT [OBOL:automatic] synonym: "spinal lamina X" EXACT [FMA:68871] synonym: "substantia gelatinosa centralis" RELATED OMO:0003011 [NeuroNames:1702] synonym: "substantia gelatinosa spinalis" RELATED OMO:0003011 [NeuroNames:1649] synonym: "substantia gelationsa centralis" RELATED OMO:0003011 [NeuroNames:1649] synonym: "substantia gliosa (spinalis)" RELATED OMO:0003011 [NeuroNames:1649] xref: BIRNLEX:2669 xref: DHBA:12647 xref: EMAPA:37747 {source="MA:th"} xref: FMA:68871 xref: FMA:77036 xref: HBA:9525 xref: neuronames:1649 xref: neuronames:1702 xref: SCTID:362427009 xref: UMLS:C1512274 {source="BIRNLEX:2669"} xref: Wikipedia:Gray_commissure is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg" xsd:anyURI [Term] id: UBERON:0004678 name: apex of spinal cord dorsal horn namespace: uberon synonym: "apex columnae posterioris" EXACT OMO:0003011 [FMA:256700, FMA:TA] synonym: "apex cornu posterioris medullae spinalis" EXACT OMO:0003011 [FMA:256700, FMA:TA] synonym: "apex of dorsal gray column" EXACT [FMA:256700] synonym: "apex of dorsal gray column of spinal cord" EXACT [FMA:256700] synonym: "apex of dorsal horn of spinal cord" EXACT [FMA:256700] synonym: "apex of posterior gray column" RELATED [FMA:256700] synonym: "apex of posterior horn of spinal cord" EXACT [FMA:256700] synonym: "apex of spinal cord dorsal horn" EXACT [BIRNLEX:2670] synonym: "apex of spinal cord posterior horn" EXACT [BIRNLEX:2670] xref: BIRNLEX:2670 xref: FMA:256700 xref: neuronames:2138 is_a: UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0004679 name: dentate gyrus molecular layer namespace: uberon def: "The molecular layer of the dentate gyrus that is bounded by the pial surface superficially and the dentate gyrus granule cell layer deep. It is divided into 2 or more sublayers." [BIRNLEX:4127] synonym: "dentate gyrus molecular layer" EXACT [BIRNLEX:4127] synonym: "molecular layer of dentate gyrus" EXACT [FMA:83677] synonym: "molecular layer of the dentate gyrus" RELATED [BAMS:Mol] synonym: "stratum moleculare gyri dentati" EXACT OMO:0003011 [FMA:83677, FMA:TA] xref: BAMS:mo xref: BAMS:Mol xref: BIRNLEX:4127 xref: EMAPA:35279 xref: FMA:83677 xref: MA:0003122 xref: MBA:10703 xref: neuronames:2121 is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0004680 name: body of fornix namespace: uberon def: "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum." [BIRNLEX:739] synonym: "body of fornix" EXACT [BIRNLEX:739] synonym: "body of fornix of forebrain" EXACT [FMA:61968] synonym: "column of fornix" EXACT [FMA:61968] synonym: "columna fornicis" EXACT OMO:0003011 [FMA:61968, FMA:TA] synonym: "columna fornicis" RELATED OMO:0003011 [Wikipedia:Columns_of_fornix] synonym: "columns of fornix" EXACT [Wikipedia:Columns_of_fornix] synonym: "columns of the fornix" RELATED [BAMS:fx] synonym: "fornix body" EXACT [FMA:61968] xref: BAMS:bfx xref: BAMS:fx xref: BIRNLEX:739 xref: DHBA:10577 xref: DHBA:10578 xref: FMA:61968 xref: HBA:9252 xref: MBA:436 xref: neuronames:271 xref: SCTID:369117006 xref: UMLS:C0228289 {source="BIRNLEX:739"} xref: Wikipedia:Columns_of_fornix is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000052 {source="FMA", source="NIF"} ! fornix of brain relationship: part_of UBERON:0002316 {source="FMA"} ! white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png" xsd:anyURI property_value: UBPROP:0000001 "The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted][Wikipedia:Columns_of_fornix]." xsd:string {source="Wikipedia:Columns_of_fornix"} [Term] id: UBERON:0004682 name: corona radiata of neuraxis namespace: uberon def: "Fan shaped white matter mass comprised of afferent and efferent fibers from the cerebral cortex arranged in radially arrayed bundles, converging towards the internal capsule (Carpenter, Core Text of Neuroanatomy, 3rd ed, 1985, pg. 30; Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 84)." [NLXANAT:090903] synonym: "corona radiata" EXACT [NLXANAT:090903] xref: DHBA:12030 xref: FMA:18661 xref: HBA:265505046 xref: neuronames:1446 xref: NLXANAT:090903 xref: Wikipedia:Corona_radiata is_a: UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray745.png" xsd:anyURI [Term] id: UBERON:0004683 name: parasubiculum namespace: uberon def: "A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info)." [NLXANAT:091002] synonym: "parasubicular area" EXACT [NLXANAT:091002] synonym: "parasubicular cortex" RELATED [DHBA:10316] synonym: "parasubicular cortex (parasubiculum)" EXACT [DHBA:10316] synonym: "parasubiculum" EXACT [NLXANAT:091002] xref: BAMS:PAR xref: BAMS:PAS xref: BAMS:PaS xref: BM:Tel-Cx-PASB xref: DHBA:10316 xref: DMBA:16186 xref: FMA:77604 xref: HBA:4253 xref: MBA:843 xref: neuronames:2304 xref: NLXANAT:091002 xref: OldNeuroNames:2304 {source="NLXANAT:091002"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation property_value: RO:0002171 UBERON:0001953 {source="ABA"} property_value: RO:0002171 UBERON:0002191 {source="ABA"} property_value: RO:0002171 UBERON:0002728 {source="ABA"} [Term] id: UBERON:0004684 name: raphe nuclei namespace: uberon def: "The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane." [https://sourceforge.net/tracker/?func=detail&aid=3248146&group_id=36855&atid=440764, NLXANAT:20090205] comment: we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei' subset: vertebrate_core synonym: "nuclei raphes" EXACT OMO:0003011 [FMA:84017, FMA:TA] synonym: "nuclei raphes" RELATED OMO:0003011 [Wikipedia:Raphe_nuclei] synonym: "raphe cluster" RELATED [Wikipedia:Raphe_nuclei] synonym: "raphe nuclei" EXACT [FMA:84017, NLXANAT:20090205] synonym: "raphe nuclei set" EXACT [FMA:84017] synonym: "raphe nucleus" RELATED [ZFA:0001429] synonym: "raphe of mesenchephalon" RELATED [BAMS:RA] synonym: "set of raphe nuclei" RELATED [FMA:84017] xref: BAMS:RA xref: EMAPA:35721 xref: FMA:84017 xref: MA:0003147 xref: MESH:D011903 xref: NCIT:C97335 xref: neuronames:2495 xref: NLXANAT:20090205 xref: TAO:0001429 xref: UMLS:C0034671 {source="ncithesaurus:Raphe_Nuclei"} xref: Wikipedia:Raphe_nuclei xref: ZFA:0001429 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002275 {source="GO", source="Wikipedia"} ! reticular formation property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI [Term] id: UBERON:0004703 name: dorsal thalamus namespace: uberon subset: human_reference_atlas subset: pheno_slim subset: vertebrate_core synonym: "dorsal thalamus" EXACT [FMA:62007] synonym: "dorsal thalamus (Anthoney)" EXACT [FMA:62007] synonym: "dorsal tier of thalamus" RELATED [DMBA:DTTh] synonym: "thalamus dorsalis" EXACT OMO:0003011 [BTO:0001365, Wikipedia:Thalamus] synonym: "thalamus proper" EXACT [PMCID:PMC3345571] synonym: "thalamus, pars dorsalis" EXACT [ZFA:0000653] xref: BAMS:DOR xref: BAMS:Dorsal_thalamus xref: BM:Die-Th xref: DHBA:10391 xref: DMBA:16396 xref: EHDAA2:0000692 xref: EMAPA:35295 xref: FMA:62007 xref: HBA:4393 xref: MA:0000180 xref: ncithesaurus:Dorsal_Thalamus xref: neuronames:1455 xref: PBA:128013018 xref: TAO:0000653 xref: ZFA:0000653 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus property_value: IAO:0000116 "TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659" xsd:string property_value: RO:0002175 NCBITaxon:117569 {source="Ariens, p. 1192"} property_value: RO:0002175 NCBITaxon:7742 property_value: RO:0002175 NCBITaxon:7776 {notes="http://neurolex.org/wiki/Category_talk:Thalamus", source="PMID:8167659"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004714 name: septum pellucidum namespace: uberon def: "A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix." [BIRNLEX:1315] subset: pheno_slim synonym: "lateral septum" RELATED [MP:0012004] synonym: "pellucidum" RELATED [BTO:0003448] synonym: "septal pellucidum" EXACT [BIRNLEX:1315] synonym: "septum gliosum" RELATED OMO:0003011 [NeuroNames:256] synonym: "septum lucidum" RELATED [BTO:0003448, MP:0012004] synonym: "septum pellucidum of telencephalic ventricle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "supracommissural septum" EXACT [FMA:61844] xref: BAMS:spt xref: BAMS:SptP xref: BIRNLEX:1315 xref: BTO:0003448 xref: DHBA:12098 xref: FMA:61844 xref: MA:0002979 xref: MESH:D012688 xref: NCIT:C33536 xref: neuronames:256 {source="BIRNLEX:1315"} xref: SCTID:362313003 xref: UMLS:C0036700 {source="BIRNLEX:1315", source="ncithesaurus:Septum_Pellucidum"} xref: Wikipedia:Septum_pellucidum relationship: part_of UBERON:0000446 ! septum of telencephalon relationship: part_of UBERON:0002285 ! telencephalic ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI [Term] id: UBERON:0004717 name: Brodmann (1909) area 29 namespace: uberon def: "Brodmann area 29, also known as granular retrolimbic area 29 or granular retrosplenial cortex, is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30 (Brodmann-1909)." [Wikipedia:Brodmann_area_29] synonym: "area 29 of Brodmann" EXACT [FMA:68626] synonym: "area 29 of Brodmann-1909" EXACT [BIRNLEX:1763] synonym: "area retrolimbica granularis" EXACT [BIRNLEX:1763] synonym: "B09-29" BROAD OMO:0003000 [BIRNLEX:1763, NIFSTD:SumsDB_abbrevSource] synonym: "B09-29" EXACT [BIRNLEX:1763] synonym: "BA29" RELATED [FMA:68626] synonym: "Brodmann (1909) area 29" EXACT [BIRNLEX:1763] synonym: "Brodmann area 29" EXACT [FMA:68626] synonym: "Brodmann area 29, granular retrolimbic" EXACT [BIRNLEX:1763] synonym: "Brodmann's area 29" EXACT [FMA:68626] synonym: "granular retrolimbic area 29" RELATED [BTO:0003978, Wikipedia:Brodmann_area_29] xref: BIRNLEX:1763 xref: BTO:0003978 xref: FMA:68626 xref: neuronames:2104 xref: UMLS:C1272490 {source="BIRNLEX:1763"} xref: Wikipedia:Brodmann_area_29 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area property_value: UBPROP:0000001 "A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30[BTO:0003978]." xsd:string {source="BTO:0003978"} [Term] id: UBERON:0004718 name: Brodmann (1909) area 26 namespace: uberon synonym: "area 26 of Brodmann" EXACT [FMA:68623] synonym: "area 26 of Brodmann (guenon)" RELATED [NeuroNames:1031] synonym: "area 26 of Brodmann-1909" EXACT [BIRNLEX:1757] synonym: "area ectosplenialis" EXACT [BIRNLEX:1757] synonym: "B09-26" BROAD OMO:0003000 [BIRNLEX:1757, NIFSTD:SumsDB_abbrevSource] synonym: "B09-26" EXACT [BIRNLEX:1757] synonym: "BA26" RELATED [FMA:68623] synonym: "Brodmann (1909) area 26" EXACT [BIRNLEX:1757] synonym: "Brodmann area 26" EXACT [FMA:68623] synonym: "Brodmann area 26, ectosplenial" EXACT [BIRNLEX:1757] synonym: "brodmann's area 26" RELATED [NeuroNames:1031] synonym: "ectosplenial area" EXACT [FMA:68623] synonym: "ectosplenial area 26" RELATED [BTO:0003979, Wikipedia:Brodmann_area_26] xref: BIRNLEX:1757 xref: BTO:0003979 xref: FMA:68623 xref: neuronames:1031 {source="BIRNLEX:1757"} xref: UMLS:C1272489 {source="BIRNLEX:1757"} xref: Wikipedia:Brodmann_area_26 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area property_value: UBPROP:0000001 "In the human this area is called ectosplenial area 26. It is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. It is a narrow band located in the isthmus of cingulate gyrus adjacent to the fasciolar gyrus internally. It is bounded externally by the granular retrolimbic area 29[BTO:0003979]." xsd:string {source="BTO:0003979"} [Term] id: UBERON:0004720 name: cerebellar vermis namespace: uberon def: "A subregion of the cerebellar cortex, consisting of the most medial zone of the cerebellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissures in others (e.g., ventrally)." [BIRNLEX:1106] subset: human_reference_atlas subset: pheno_slim synonym: "cerebellum vermis" EXACT [FMA:76928] synonym: "vermal parts of the cerebellum" EXACT [BIRNLEX:1175] synonym: "vermal regions" EXACT [ABA:VERM] synonym: "vermis" RELATED [Wikipedia:Cerebellar_vermis] synonym: "vermis cerebelli" RELATED OMO:0003011 [Wikipedia:Cerebellar_vermis] synonym: "vermis cerebelli [I-X]" EXACT OMO:0003011 [FMA:76928, FMA:TA] synonym: "vermis of cerebellum" EXACT [FMA:76928] synonym: "vermis of cerebellum [I-X]" EXACT [FMA:76928] xref: BAMS:Ver xref: BAMS:VERM xref: BIRNLEX:1106 xref: BIRNLEX:1175 xref: CALOHA:TS-2059 xref: DHBA:10658 xref: DMBA:16814 xref: EMAPA:35214 xref: EV:0100298 xref: FMA:76928 xref: HBA:4698 xref: MA:0000202 xref: MBA:645 xref: MESH:D065814 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33866 xref: neuronames:2463 xref: SCTID:279105006 xref: UMLS:C0228482 {source="BIRNLEX:1106", source="ncithesaurus:Vermis"} xref: Wikipedia:Cerebellar_vermis is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002129 {source="ABA"} ! cerebellar cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002171 UBERON:0002245 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "In bony fish, or teleosts, it has been proposed that the cerebellar auricles, which receive a large amount of input from the vestibulolateral line system, constitute the vestibulocerebellum and are homologues of the flocculonodular lobe of higher vertebrates along with the corpus cerebelli, which receives spinocerebellar and tectocerebellar fibers. The labyrinth and the lateral line organs of lampreys have structural and functional similarity. An important difference between the two structures is that the arrangement of the lateral line organs are such that they are sensitive to relative motion of the fluid surrounding the animal, whereas the labyrinths, having very similar sensing mechanisms, are sensitive to endolymph, providing information concerning the animal's own equilibrium of the body and orientation in space" xsd:string {source="WP"} property_value: UBPROP:0000012 "we follow MBA and NIFSTD in making this part of the cerebellar cortex, but FMA may handle this differently" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0004725 name: piriform cortex namespace: uberon def: "The subdivision of the laminated olfactory cortex with only three main layers that receive monosynaptic input from the olfactory bulb via the lateral olfactory tract; it is located bilaterally in the ventrolateral forebrain and is commonly divided into anterior and posterior regions." [MP:0010009, PMID:17714095] subset: human_reference_atlas subset: pheno_slim synonym: "area prepiriformis" RELATED OMO:0003011 [NeuroNames:165] synonym: "cortex piriformis" EXACT OMO:0003011 [Wikipedia:Piriform_cortex] synonym: "eupalaeocortex" RELATED OMO:0003011 [NeuroNames:165] synonym: "olfactory pallium" RELATED [ISBN:0471888893] synonym: "palaeocortex II" RELATED OMO:0003011 [NeuroNames:165] synonym: "paleopallium" RELATED [Wikipedia:Piriform_cortex] synonym: "piriform area" RELATED [BTO:0002651, MA:0000978] synonym: "piriform lobe" RELATED [BTO:0002651] synonym: "primary olfactory areas" EXACT [BIRNLEX:2706] synonym: "primary olfactory cortex" RELATED INCONSISTENT [Wikipedia:Piriform_cortex] synonym: "pyriform cortex" RELATED [Wikipedia:Piriform_cortex] synonym: "pyriform lobe" RELATED [Wikipedia:Piriform_cortex] synonym: "regio praepiriformis" RELATED OMO:0003011 [NeuroNames:165] xref: BAMS:PIR xref: BAMS:Pir xref: BIRNLEX:1097 xref: BTO:0002651 xref: DHBA:10311 xref: EMAPA:32767 xref: EV:0100178 xref: HBA:10142 xref: MA:0000978 xref: MESH:D066195 xref: neuronames:165 {source="BIRNLEX:1097"} xref: SCTID:369098004 xref: UMLS:C0228280 {source="BIRNLEX:1097"} xref: Wikipedia:Piriform_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002894 ! olfactory cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "Piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion" xsd:string {source="WP"} [Term] id: UBERON:0004727 name: cochlear nerve namespace: uberon def: "A nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [Wikipedia:Cochlear_nerve] subset: pheno_slim subset: uberon_slim synonym: "auditory nerve" EXACT [FMA:53431] synonym: "cochlear component" BROAD [] synonym: "cochlear root of acoustic nerve" EXACT [FMA:53431] synonym: "cochlear root of eighth cranial nerve" EXACT [FMA:53431] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "vestibulocochlear nerve cochlear component" RELATED [EMAPA:17802] synonym: "vestibulocochlear VIII nerve cochlear component" EXACT [MA:0001110] xref: BAMS:cVIIIn xref: BM:VIIIN xref: BTO:0003490 xref: EHDAA2:0002195 xref: EMAPA:17802 xref: FMA:53431 xref: GAID:723 xref: MA:0001110 xref: MBA:948 xref: MESH:D003056 xref: NCIT:C12697 xref: neuronames:1406 xref: SCTID:280286001 xref: UMLS:C0009201 {source="ncithesaurus:Cochlear_Nerve"} xref: VHOG:0001182 xref: Wikipedia:Cochlear_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: UBERON:0004731 name: neuromere namespace: uberon def: "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres)." [DOI:10.1016/j.tins.2013.06.004, https://github.com/obophenotype/uberon/issues/318] subset: pheno_slim synonym: "neural metamere" RELATED [] synonym: "neural segment" RELATED [] synonym: "neural tube metameric segment" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "neural tube segment" EXACT [] synonym: "neuromere" EXACT [] synonym: "neuromeres" EXACT OMO:0003004 [TAO:0001328] xref: NLX:147842 xref: TAO:0001328 xref: Wikipedia:Neuromere xref: ZFA:0001328 is_a: UBERON:0004732 ! segmental subdivision of nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-9114-8737 property_value: IAO:0000116 "We take the definition of neuromere from Puelles et al, although the existence of mesomeres and prosomeres may not be widely accepted" xsd:string property_value: UBPROP:0000001 "A metameric segment of the central nervous system.[ZFA]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001328", ontology="TAO", source="ZFIN:curator"} creation_date: 2009-06-18T09:00:04Z [Term] id: UBERON:0004732 name: segmental subdivision of nervous system namespace: uberon def: "Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres." [FBbt:00005140, http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "neuromere" RELATED [FBbt:00005140] relationship: part_of UBERON:0001016 ! nervous system property_value: IAO:0000116 "revisit this after CARO is revised and/or we have defined metameric segment; note that with the additional of an A/P axis constraint this corresponds to what Richter at al call a neuromere (PMID:21062451)" xsd:string [Term] id: UBERON:0004733 name: segmental subdivision of hindbrain namespace: uberon def: "An organ subunit that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] subset: non_informative synonym: "hindbrain segment" EXACT [FMA:61998] synonym: "segment of hindbrain" EXACT [FMA:61998] xref: FMA:61998 is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0004863 name: thoracic sympathetic nerve trunk namespace: uberon def: "A sympathetic nerve trunk that is part of a thorax [Automatically generated definition]." [OBOL:automatic] synonym: "nerve trunk of sympathetic nervous system of thorax" EXACT [OBOL:automatic] synonym: "nerve trunk of sympathetic part of autonomic division of nervous system of thorax" EXACT [OBOL:automatic] synonym: "sympathetic nerve trunk of thorax" EXACT [OBOL:automatic] synonym: "sympathetic nervous system nerve trunk of thorax" EXACT [OBOL:automatic] synonym: "thoracic part of sympathetic trunk" EXACT [FMA:6262] synonym: "thoracic sympathetic chain" EXACT [FMA:6262] synonym: "thoracic sympathetic trunk" RELATED [FMA:6262] synonym: "thorax nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "thorax nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "thorax sympathetic nerve trunk" EXACT [OBOL:automatic] synonym: "thorax sympathetic nervous system nerve trunk" EXACT [OBOL:automatic] xref: EMAPA:37657 {source="MA:th"} xref: FMA:6262 xref: MA:0001165 xref: NCIT:C52827 xref: UMLS:C1710393 {source="ncithesaurus:Thoracic_Sympathetic_Nerve_Trunk"} is_a: UBERON:0004295 ! sympathetic nerve trunk [Term] id: UBERON:0004864 name: vasculature of retina namespace: uberon def: "A vasculature that is part of a retina [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas subset: pheno_slim synonym: "retina vasculature" EXACT [GO:0061298] synonym: "retina vasculature of camera-type eye" EXACT [GO:0061298] synonym: "retinal blood vessels" EXACT [FMA:76552] synonym: "retinal blood vessels set" EXACT [FMA:76552] synonym: "retinal vasculature" EXACT [OBOL:automatic] synonym: "set of blood vessels of retina" EXACT [OBOL:automatic] synonym: "set of retinal blood vessels" EXACT [FMA:76552] synonym: "vasa sanguinea retinae" EXACT OMO:0003011 [FMA:76552, FMA:TA] xref: FMA:76552 xref: MESH:D012171 relationship: part_of UBERON:0000966 ! retina property_value: RO:0002161 NCBITaxon:8782 {source="PMID:21622558", source="PMID:2772405", submitter="michaelerice"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004869 name: parietal organ namespace: uberon def: "A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]." [Wikipedia:Parietal_eye] synonym: "parietal eye" EXACT [Wikipedia:Parietal_eye] synonym: "third eye" RELATED [Wikipedia:Parietal_eye] xref: Wikipedia:Parietal_eye relationship: part_of UBERON:0015238 {source="cjm"} ! pineal complex property_value: RO:0002161 NCBITaxon:40674 property_value: RO:0002161 NCBITaxon:8782 [Term] id: UBERON:0004904 name: neuron projection bundle connecting eye with brain namespace: uberon def: "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila." [http://orcid.org/0000-0002-6601-2165] comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) subset: grouping_class subset: human_reference_atlas subset: pheno_slim synonym: "optic nerve" BROAD [BTO:0000966] synonym: "optic nerve (generic)" EXACT [] xref: BTO:0000966 xref: EV:0100351 xref: FBbt:00001956 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000232 is_a: UBERON:0000122 ! neuron projection bundle property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004922 name: postnatal subventricular zone namespace: uberon def: "A mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells[MP]." [MP:0004275] subset: pheno_slim synonym: "adult subventricular zone" EXACT [MP:0004275] synonym: "brain subventricular zone" EXACT [MA:0000817] synonym: "postnatal subependymal layer" RELATED [] synonym: "postnatal subependymal plate" RELATED [] synonym: "postnatal subependymal zone" RELATED [] synonym: "postnatal subventricular zone" EXACT [MP:0004275] synonym: "SEZ" EXACT OMO:0003000 [MP:0004275] synonym: "subependymal layer" RELATED [MP:0004275] synonym: "subependymal plate" RELATED [MP:0004275] synonym: "subependymal zone" RELATED [MP:0004275] synonym: "subventricular zone" EXACT [MA:0000817] synonym: "subventricular zone of brain" EXACT [] synonym: "SVZ" EXACT OMO:0003000 [MP:0004275] xref: BAMS:SEL xref: BAMS:SEZ xref: BTO:0003090 xref: DHBA:10536 xref: EMAPA:32804 xref: MA:0000817 xref: MBA:98 xref: neuronames:1901 xref: NLX:144262 xref: PBA:294021970 xref: Wikipedia:Subventricular_zone is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0001890 {source="GO"} ! forebrain property_value: UBPROP:0000001 "A paired brain structure situated throughout the lateral walls of the lateral ventricles. It has been associated with having four distinct layers of variable thickness and cell density, as well as cellular composition[WP][Wikipedia:Subventricular_zone]." xsd:string {source="Wikipedia:Subventricular_zone"} property_value: UBPROP:0000001 "The subventricular zone (SVZ) is a paired brain structure situated throughout the lateral walls of the lateral ventricles. Along with the subgranular zone of dentate gyrus, subventricular zone serves as a source of neural stem cells in the process of adult neurogenesis. It harbors the largest population of proliferating cells in the adult brain of rodents, monkeys and humans. Neurons generated in SVZ travel to the olfactory bulb via the rostral migratory stream[BTO:0003090]." xsd:string {source="BTO:0003090"} property_value: UBPROP:0000001 "The subventricular zone (SVZ) is one of two sources of adult-born neurons in the mammalian brain, the other being the subgranular zone (SGZ) of the hippocampus. In most adult mammals, the SVZ is a three-layered sheath that lies along the lateral wall of the lateral ventricle and consists of type A, B, and C cells. Type A rest along the ventricle wall and are neuronal precursor cells, Type B are adjacent astrocytes, and Type C are immature precursors to the Type A neuroblasts. The neuronal precursor cells travel along the rostral migratory stream ensheathed in a tube of Type B astrocytes, until they reach the olfactory bulb. There they integrate into the existing cellular network and mature into local interneurons. While the majority become adult-born granule cells, a subset become periglomerular cells. Interestingly, the human SVZ differs from other mammals' in several ways. It consists of four layers rather than three: ependymal cells (layer I), a hypo cellular gap (layer II), a ribbon of astrocytes (layer III), and a transitional zone (layer IV). The astrocytes are capable of differentiating into many kinds of tissue including new neurons. However, there is no evidence that the proliferating neurons travel along the rostral migratory stream in a chain to populate the olfactory bulb with new interneurons, as is the case for other mammals[NLX:144262]." xsd:string {source="NLX:144262"} property_value: UBPROP:0000010 "WP divides this into 4 layers." xsd:string [Term] id: UBERON:0005053 name: primary nerve cord namespace: uberon def: "A cluster of neurons that is the most prominent longitudinally extending condensed part of a nervous system." [PMID:21062451] synonym: "nerve cord" EXACT [BILA:0000136] synonym: "true nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BILA:0000136 xref: BTO:0001656 relationship: part_of UBERON:0001016 ! nervous system property_value: IAO:0000232 "some species have multiple longitudinal nerve cords; this class refers to the most prominent one, which is dorsal in chordates and ventral in others." xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/691" xsd:anyURI [Term] id: UBERON:0005054 name: primary dorsal nerve cord namespace: uberon def: "A nerve cord in the dorsal mid-line that is the most prominent nerve cord." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Dorsal_nerve_cord] synonym: "dorsal nerve cord" EXACT [BTO:0002329, http://tolweb.org/Chordata/2499, Wikipedia:Dorsal_nerve_cord] synonym: "true dorsal nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BTO:0002329 xref: Wikipedia:Dorsal_nerve_cord is_a: UBERON:0005053 ! primary nerve cord [Term] id: UBERON:0005075 name: forebrain-midbrain boundary namespace: uberon def: "An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain." [OBOL:automatic] synonym: "diencephalic-mesencephalic boundary" EXACT [ZFA:0001367] synonym: "forebrain midbrain boundary" EXACT [ZFA:0001367] synonym: "forebrain-midbrain boundary region" EXACT [EMAPA:36449] xref: EMAPA:36449 xref: TAO:0001367 xref: ZFA:0001367 relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000001 "The boundary between the diencephalon and the mesencephalon.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001367", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from forebrain midbrain boundary neural tube (TAO:0007040)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001367", ontology="TAO"} [Term] id: UBERON:0005076 name: hindbrain-spinal cord boundary namespace: uberon def: "An anatomical boundary that adjacent_to a hindbrain and adjacent_to a spinal cord." [OBOL:automatic] synonym: "hindbrain-spinal cord boundary region" EXACT [] relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0005158 name: parenchyma of central nervous system namespace: uberon def: "The functional tissue of the central nervous system consisting of neurons and glial cells." [CL:tm, https://github.com/obophenotype/uberon/issues/8] synonym: "central nervous system parenchyma" EXACT [OBOL:automatic] synonym: "CNS parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of central nervous system" EXACT [] synonym: "parenchyma of CNS" EXACT [OBOL:automatic] relationship: part_of UBERON:0001017 ! central nervous system property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0005159 name: pyramid of medulla oblongata namespace: uberon def: "The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]." [Wikipedia:Pyramid_(brainstem)] synonym: "lobule VIII of Larsell" EXACT [FMA:75254] synonym: "medullary pyramid" BROAD [FMA:75254] synonym: "pyramid of medulla" BROAD [FMA:75254] synonym: "pyramid of medulla oblongata" EXACT [Wikipedia:Pyramid_(brainstem)] synonym: "pyramis (medullae oblongatae)" EXACT OMO:0003011 [FMA:75254, FMA:TA] synonym: "pyramis bulbi" EXACT OMO:0003011 [FMA:75254, FMA:TA] synonym: "pyramis medullae oblongatae" EXACT OMO:0003011 [FMA:75254, FMA:TA] xref: BAMS:pym xref: BM:Me-Py xref: DHBA:12535 xref: FMA:75254 xref: neuronames:705 xref: SCTID:279289009 xref: SCTID:9535007 xref: Wikipedia:Pyramid_(brainstem) is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0005197 name: segmental spinal nerve namespace: uberon synonym: "cervical segmental spinal nerves C1-7" EXACT [EHDAA2:0001822] xref: EHDAA:3778 xref: EMAPA:16990 xref: EMAPA:25149 xref: MA:0000234 xref: VHOG:0000920 is_a: UBERON:0001780 {source="MA"} ! spinal nerve property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0005206 name: choroid plexus stroma namespace: uberon def: "Stromal matrix surrounding blood vessels within the choroid plexus." [PMCID:PMC3496674] synonym: "choroid plexus stromal matrix" EXACT [PMCID:PMC3496674] xref: EMAPA:36609 xref: MA:0000825 relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0005217 name: midbrain subarachnoid space namespace: uberon def: "A subarachnoid space that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] synonym: "subarachnoid space mesencephalon" RELATED [VHOG:0001304] synonym: "subarachnoid space midbrain" EXACT [VHOG:0001304] xref: EMAPA:19055 xref: VHOG:0001304 is_a: UBERON:0039175 ! subarachnoid space of brain relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000001 "Subarachnoid space that is part of the midbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001304", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005218 name: diencephalon subarachnoid space namespace: uberon def: "A subarachnoid space that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] synonym: "subarachnoid space diencephalon" EXACT [VHOG:0001302] xref: EMAPA:19053 xref: VHOG:0001302 is_a: UBERON:0039175 ! subarachnoid space of brain relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000001 "Subarachnoid space that is part of the diencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001302", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005219 name: hindbrain subarachnoid space namespace: uberon def: "A subarachnoid space that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] synonym: "subarachnoid space hindbrain" EXACT [VHOG:0001303] synonym: "subarachnoid space rhombencephalon" RELATED [VHOG:0001303] xref: EMAPA:18211 xref: VHOG:0001303 is_a: UBERON:0039175 ! subarachnoid space of brain relationship: part_of UBERON:0002028 ! hindbrain property_value: UBPROP:0000001 "Subarachnoid space that is part of the hindbrain. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001303", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005239 name: basal plate metencephalon namespace: uberon synonym: "metencephalon basal plate" EXACT [EHDAA2:0001154] xref: EHDAA2:0001154 xref: EMAPA:17078 xref: VHOG:0000320 is_a: UBERON:0004064 ! neural tube basal plate property_value: UBPROP:0000001 "The ventral half of the developing neural tube that is the metencephalon. [Chordate_evolution_and_the_origin_of_craniates:_An_old_brain_in_a_new_head._AnaT_Rec_(New_Anat)_(2000)_261(3):_111-125, See_Butler_AB][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000320", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005240 name: basal plate medulla oblongata namespace: uberon synonym: "medulla oblongata basal plate" EXACT [EHDAA2:0001093] xref: EHDAA2:0001093 xref: EMAPA:17557 xref: VHOG:0000324 is_a: UBERON:0004064 ! neural tube basal plate property_value: UBPROP:0000001 "The ventral half of the developing neural tube that is the medulla oblongata. [Chordate_evolution_and_the_origin_of_craniates:_An_old_brain_in_a_new_head._AnaT_Rec_(New_Anat)_(2000)_261(3):_111-125, See_Butler_AB][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000324", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005281 name: ventricular system of central nervous system namespace: uberon def: "A set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord[WP]." [Wikipedia:Ventricular_system] subset: efo_slim subset: vertebrate_core synonym: "CNS ventricular system" EXACT [EHDAA2:0004362] synonym: "ventricle system" RELATED [Wikipedia:Ventricular_system] synonym: "ventricular system" EXACT [ZFA:0001261] synonym: "ventricular system of neuraxis" EXACT [FMA:242675] synonym: "ventriculi cerebri" RELATED OMO:0003011 [Wikipedia:Ventricular_system] xref: EFO:0003650 xref: EHDAA2:0004362 xref: EV:0100306 xref: FMA:242675 xref: MBA:73 xref: neuronames:2497 xref: TAO:0001261 xref: Wikipedia:Ventricular_system xref: ZFA:0001261 is_a: UBERON:0000467 {source="ZFA"} ! anatomical system relationship: part_of UBERON:0001017 ! central nervous system property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png" xsd:anyURI property_value: IAO:0000116 "TODO - resolve space vs structure conflation. We follow FMA in making this and the various ventricles a structure - it follows from this that strutures such as the tela choroidea and choroid plexuses can be part of the ventricles and ventricular system. Note: see also the class 'neuraxis cavity'" xsd:string [Term] id: UBERON:0005282 name: ventricular system of brain namespace: uberon synonym: "brain ventricular system" EXACT [VHOG:0000005] xref: CALOHA:TS-1295 xref: EMAPA:37447 {source="MA:th"} xref: FMA:242787 xref: VHOG:0000005 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0005281 ! ventricular system of central nervous system property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000005", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005283 name: tela choroidea namespace: uberon def: "A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]." [http://isc.temple.edu/neuroanatomy/lab/embryo_new/choroid/, ISBN:0471888893, Wikipedia:Tela_chorioidea] subset: pheno_slim subset: vertebrate_core synonym: "tela chorioidea" RELATED [FMA:242849] xref: FMA:242849 xref: neuronames:1378 xref: TAO:0000447 xref: Wikipedia:Tela_chorioidea xref: ZFA:0000447 relationship: part_of UBERON:0005358 {source="FMA"} ! ventricle of nervous system property_value: UBPROP:0000001 "Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus[ZFA:0000447]." xsd:string {source="ZFA:0000447"} property_value: UBPROP:0000010 "Vascularized tela choroidea is choroid plexus." xsd:string property_value: UBPROP:0000012 "Note that the structure in ZFA may be different" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0005286 name: tela choroidea of midbrain cerebral aqueduct namespace: uberon def: "Tela choroidea that lines the tectal ventricle." [ZFIN:curator] synonym: "tela chorioidea tectal ventricle" EXACT [ZFA:0005157] synonym: "tela choroidea of cerebral aqueduct" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157] xref: TAO:0005157 xref: ZFA:0005157 is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002289 ! midbrain cerebral aqueduct property_value: UBPROP:0000001 "Tela chorioidea that lines the tectal ventricle.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005157", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0005287 name: tela choroidea of fourth ventricle namespace: uberon def: "Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP]." [Wikipedia:Tela_chorioidea_of_fourth_ventricle, ZFIN:curator] subset: vertebrate_core synonym: "choroid membrane" EXACT [FMA:78493] synonym: "choroid membrane of fourth ventricle" EXACT [FMA:78493] synonym: "tela chorioidea fourth ventricle" EXACT [] synonym: "tela choroidea" BROAD [FMA:78493, FMA:TA] synonym: "tela choroidea fourth ventricle" EXACT [] synonym: "tela choroidea of fourth ventricle" EXACT [] synonym: "tela choroidea ventriculi quarti" EXACT OMO:0003011 [FMA:78493, FMA:TA] synonym: "tela choroidea ventriculi quarti" RELATED OMO:0003011 [Wikipedia:Tela_chorioidea_of_fourth_ventricle] xref: BAMS:tc4v xref: FMA:78493 xref: neuronames:639 xref: SCTID:362321009 xref: TAO:0005158 xref: Wikipedia:Tela_chorioidea_of_fourth_ventricle xref: ZFA:0005158 is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002422 ! fourth ventricle property_value: UBPROP:0000001 "Tela chorioidea that lines the fourth ventricle.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005158", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0005288 name: tela choroidea of third ventricle namespace: uberon def: "Tela chorioidea that lines the third ventricle[ZFA]. The part of the choroid plexus in relation to the body of the ventricle forms the vascular fringed margin of a triangular process of pia mater, named the tela chorioidea of the third ventricle, and projects from under cover of the lateral edge of the fornix. Blood is supplied by branches from the superior cerebellar artery[WP]." [Wikipedia:Tela_chorioidea_of_third_ventricle, ZFIN:curator] subset: vertebrate_core synonym: "choroid membrane of third ventricle" EXACT [FMA:78463] synonym: "tela chorioidea of third ventricle" EXACT [] synonym: "tela chorioidea third ventricle" EXACT [ZFA:0005159] synonym: "tela choroidea third ventricle" EXACT [] synonym: "tela choroidea ventriculi tertii" EXACT OMO:0003011 [FMA:78463, FMA:TA] synonym: "tela choroidea ventriculi tertii" RELATED OMO:0003011 [Wikipedia:Tela_chorioidea_of_third_ventricle] xref: BAMS:tc3v xref: FMA:78463 xref: neuronames:453 xref: SCTID:362320005 xref: TAO:0005159 xref: Wikipedia:Tela_chorioidea_of_third_ventricle xref: ZFA:0005159 is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002286 ! third ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/60/Gray723.png" xsd:anyURI property_value: UBPROP:0000001 "Tela chorioidea that lines the third ventricle.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005159", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0005289 name: tela choroidea of telencephalic ventricle namespace: uberon def: "Tela chorioidea that lines the telencephalic ventricle." [ZFIN:curator] subset: vertebrate_core synonym: "tela chorioidea of lateral ventricle" EXACT [] synonym: "tela chorioidea of telencephalic ventricle" EXACT [] synonym: "tela chorioidea telencephalic ventricle" EXACT [ZFA:0005160] synonym: "tela choroidea (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83712, FMA:TA] synonym: "tela choroidea of lateral ventricle" EXACT [FMA:83712] synonym: "tela choroidea telencephalic ventricle" EXACT [] xref: BAMS:tclv xref: FMA:83712 xref: neuronames:219 xref: SCTID:362319004 xref: TAO:0005160 xref: ZFA:0005160 is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002285 ! telencephalic ventricle [Term] id: UBERON:0005290 name: myelencephalon namespace: uberon def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon] subset: uberon_slim synonym: "myelencephalon (medulla oblongata)" RELATED [DHBA:10662] xref: BTO:0000758 xref: CALOHA:TS-0607 xref: CALOHA:TS-2365 xref: DHBA:10662 xref: EHDAA2:0001207 xref: EHDAA:5526 xref: EMAPA:17082 xref: HBA:9512 xref: MA:0000205 xref: MESH:D054024 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: VHOG:0000456 xref: Wikipedia:Myelencephalon is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: part_of UBERON:0002028 ! hindbrain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002174 NCBITaxon:7955 property_value: UBPROP:0000001 "The posterior of the two brain vesicles formed by specialization of the rhombencephalon in the developing embryo, it comprises the medulla oblongata. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000456", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/myelencephalon"} property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000456", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} property_value: UBPROP:0000013 "the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes" xsd:string [Term] id: UBERON:0005293 name: cerebellum lobe namespace: uberon def: "A major subdivision of the cerebellum: anterior, posterior and flocculonodular." [Wikipedia:Anatomy_of_the_cerebellum#Gross_anatomical_divisions] synonym: "cerebellar lobe" EXACT [FMA:242392] synonym: "cerebellar lobes" RELATED [BAMS:CBl] synonym: "lobe of cerebellum" EXACT [FMA:242392] synonym: "lobe parts of the cerebellar cortex" EXACT [BIRNLEX:1076] xref: BAMS:CBl xref: BIRNLEX:1076 xref: EMAPA:35220 xref: FMA:242392 xref: MA:0002963 xref: SCTID:263971006 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0005303 name: hypogastric nerve namespace: uberon def: "The transition between the superior hypogastric plexus and the inferior hypogastric plexus." [Wikipedia:Hypogastric_nerve] subset: human_reference_atlas synonym: "hypogastric nerve plexus" EXACT [MA:0001140] synonym: "hypogastric plexus" EXACT [EMAPA:18225] synonym: "nervus hypogastricus" RELATED OMO:0003011 [Wikipedia:Hypogastric_nerve] xref: EMAPA:18225 xref: FMA:77596 xref: MA:0001140 xref: MESH:D007001 xref: NCIT:C52831 xref: SCTID:181061006 xref: UMLS:C1711378 {source="ncithesaurus:Hypogastric_Nerve_Plexus"} xref: Wikipedia:Hypogastric_nerve is_a: UBERON:0001816 ! autonomic nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png" xsd:anyURI property_value: IAO:0000116 "check plexus vs nerve. WP indicates it is a 'transition'" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005304 name: submucous nerve plexus namespace: uberon def: "The gangliated plexus of unmyelinated nerve fibers that ramify the stomach and intestinal submucosa." [ISBN:0-683-40008-8, MP:0010800] subset: human_reference_atlas subset: pheno_slim synonym: "Henle's plexus" RELATED [MA:0001149] synonym: "Meissner's plexus" RELATED [HP:0002251, MA:0001149] synonym: "meissner's plexus" RELATED [MA:0001149] synonym: "submucosal nerve plexus" EXACT [FMA:21542, Wikipedia:Meissner's_plexus] xref: EMAPA:35834 xref: FMA:21542 xref: GAID:801 xref: MA:0001149 xref: MESH:D013368 xref: NCIT:C52747 xref: SCTID:322349001 xref: UMLS:C0038564 {source="ncithesaurus:Submucous_Nerve_Plexus"} xref: Wikipedia:Meissner's_plexus is_a: UBERON:0000429 ! enteric plexus property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "in FMA this is part of the esophagus, duodenum and intestine; this violates part-disjointness axioms in uberon" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0005340 name: dorsal telencephalic commissure namespace: uberon def: "A fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP]." [MP:0008219] subset: pheno_slim synonym: "dorsal commissure" EXACT [MP:0008219] xref: EMAPA:37844 {source="MA:th"} xref: NLX:147892 is_a: UBERON:0019294 ! commissure of telencephalon relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0005341 name: ventral commissure namespace: uberon def: "The fiber tracts that connect the ventral region of the two cerebral hemispheres and span the longitudinal fissure, including the anterior and the habenular commissures[MP]." [MP:0008220] subset: pheno_slim xref: EMAPA:37845 {source="MA:th"} is_a: UBERON:0019294 ! commissure of telencephalon relationship: part_of UBERON:0000204 ! ventral part of telencephalon [Term] id: UBERON:0005343 name: cortical plate namespace: uberon def: "The outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP]." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0008439] subset: pheno_slim synonym: "cerebral cortex cortical plate" EXACT [] synonym: "CP" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] synonym: "CxP" BROAD OMO:0003000 [PMID:23375746] synonym: "future cortical layers II-VI" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "future neocortex" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "neocortex cortical plate" EXACT [] xref: BAMS:CTXpl xref: DHBA:10515 xref: EMAPA:32711 xref: MBA:695 xref: MESH:D002540 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2702 xref: PBA:294021914 is_a: UBERON:0014950 ! layer of developing cerebral cortex property_value: UBPROP:0000011 "A single stem cell in the ventricular layer can give rise to neurons (and glial cells) in any of the cortical layers (Walsh and Cepko 1988)[NCBIBook:NBK10047]" xsd:string property_value: UBPROP:0000011 "in humans develops into cortical layers II-VI" xsd:string [Term] id: UBERON:0005345 name: cerebellum vermis lobule VIIA namespace: uberon def: "The folium vermis is a short, narrow, concealed band at the posterior extremity of the vermis, consisting apparently of a single folium, but in reality marked on its upper and under surfaces by secondary fissures. Laterally, it expands in either hemisphere into a considerable lobule, the superior semilunar lobule (lobulus semilunaris superior; postero-superior lobules), which occupies the posterior third of the upper surface of the hemisphere, and is bounded below by the horizontal sulcus. The superior semilunar lobules and the folium vermis form the lobus semilunaris." [MP:0009998, Wikipedia:Folium_(vermis)] subset: pheno_slim synonym: "folium" BROAD [MA:0001004] synonym: "folium lobule" NARROW [MP:0009995] synonym: "folium of cerebellum" RELATED [] synonym: "folium of vermis of cerebellum" EXACT [FMA:83889] synonym: "neuraxis folium" RELATED [FMA:83889] synonym: "vermic lobule VIIA" EXACT [NLXANAT:20081231] xref: EMAPA:37823 {source="MA:th"} xref: FMA:83889 xref: neuronames:675 xref: NLXANAT:20081231 is_a: UBERON:0004081 {source="NIF"} ! cerebellum vermis lobule VII [Term] id: UBERON:0005346 name: cerebellum vermis lobule VIIB namespace: uberon def: "Missing definition for term UBERON:0005346. Please replace it using linked reference." [MP:0009999] subset: pheno_slim synonym: "lobule VII B of vermis" EXACT [FMA:83890] synonym: "lobule VIIB (gracile lobule)" RELATED [DHBA:CbVIIb] synonym: "neuraxis tuber" EXACT [FMA:83890] synonym: "tuber" RELATED [NLXANAT:20081232] synonym: "tuber of vermis of cerebellum" EXACT [FMA:83890] synonym: "tuberal region" RELATED [BAMS:tuberal_region] synonym: "Ve-VIIB" RELATED OMO:0003000 [HBA:4708] synonym: "vermic lobule VIIb" EXACT [NLXANAT:20081232] xref: BAMS:Tuberal_region xref: DHBA:12848 xref: EMAPA:37824 {source="MA:th"} xref: FMA:83890 xref: HBA:12940 xref: HBA:4708 xref: neuronames:676 xref: NLXANAT:20081232 is_a: UBERON:0004081 {source="NIF"} ! cerebellum vermis lobule VII [Term] id: UBERON:0005347 name: copula pyramidis namespace: uberon subset: pheno_slim xref: BAMS:COPY xref: EMAPA:37400 {source="MA:th"} xref: MBA:1033 xref: neuronames:1894 is_a: UBERON:0004003 ! cerebellum hemisphere lobule property_value: RO:0002161 NCBITaxon:9606 {source="MP"} property_value: RO:0002171 UBERON:0001063 {source="ABA"} property_value: RO:0002171 UBERON:0005348 {source="ABA"} property_value: RO:0002171 UBERON:0005349 {source="ABA"} property_value: RO:0002171 UBERON:0005350 {source="ABA"} property_value: RO:0002171 UBERON:0005351 {source="ABA"} property_value: UBPROP:0000008 "This is a structure present in rodents and is not present in humans. The cerebellum hemisphere structure and lobulation is dramatically different between these species." xsd:string [Term] id: UBERON:0005348 name: ansiform lobule namespace: uberon def: "A lobule comprising the greater part of the hemisphere of the cerebellum; its superior and inferior surfaces are separated by the horizontal fissure into major parts known as crus I (superior semilunar lobule) and crus II (inferior semilunar lobule)." [http://medical-dictionary.thefreedictionary.com/ansiform+lobule] subset: pheno_slim synonym: "ansiform lobule of cerebellum" EXACT [FMA:72257] synonym: "ansiform lobule of cerebellum [H VII A]" RELATED [FMA:72257] synonym: "ansiform lobule of cerebellum [hVIIa]" EXACT [FMA:72257] synonym: "lobuli semilunares cerebelli" EXACT OMO:0003011 [FMA:72257, FMA:TA] synonym: "lobulus ansiformis cerebelli" EXACT OMO:0003011 [FMA:72257, FMA:TA] synonym: "lobulus ansiformis cerebelli [h vii a]" EXACT OMO:0003011 [FMA:72257, FMA:TA] synonym: "semilunar lobules of cerebellum" EXACT [FMA:72257] xref: BAMS:AN xref: BAMS:An xref: EMAPA:37397 {source="MA:th"} xref: FMA:72257 xref: MBA:1017 xref: neuronames:666 is_a: UBERON:0004003 ! cerebellum hemisphere lobule property_value: RO:0002171 UBERON:0001063 {source="ABA"} property_value: RO:0002171 UBERON:0005347 {source="ABA"} property_value: RO:0002171 UBERON:0005349 {source="ABA"} property_value: RO:0002171 UBERON:0005350 {source="ABA"} property_value: RO:0002171 UBERON:0005351 {source="ABA"} property_value: UBPROP:0000008 "MP says the ansiform lobule not present in humans; however, FMA seems to have this, as well as two subclasses, so for now we group based on synonymy from multiple sources" xsd:string [Term] id: UBERON:0005349 name: paramedian lobule namespace: uberon def: "The anterior portion of the posteroinferior lobule of the cerebellum, the posterior portion being the semilunar lobule inferior; the two are continuous with the tuber of the vermis." [http://medical-dictionary.thefreedictionary.com/paramedian+lobule] subset: pheno_slim synonym: "gracile lobule" EXACT [FMA:72523] synonym: "hemispheric lobule VIIBii" EXACT [NLXANAT:20081210] synonym: "lobule VIIIB (pyramis and biventral lobule, posterior part)" EXACT [DHBA:CbVIIIb] synonym: "lobulus gracilis" EXACT OMO:0003011 [NLXANAT:20081210] synonym: "lobulus paramedianus" EXACT [NLXANAT:20081210] synonym: "lobulus paramedianus [hVIIb]" EXACT OMO:0003011 [FMA:72523, FMA:TA] synonym: "paramedian 1 (hVII)" EXACT [NLXANAT:20081210] synonym: "paramedian lobule [h vii b]" EXACT [FMA:72523] synonym: "paramedian lobule [HVIIB]" EXACT [FMA:72523] synonym: "paramedian lobule [hVIIIb]" EXACT [FMA:72523] synonym: "paramedian lobule of the cerebellum" RELATED [BAMS:PRM] xref: BAMS:GrL xref: BAMS:PM xref: BAMS:PRM xref: DHBA:12850 xref: DMBA:16943 xref: EMAPA:37403 {source="MA:th"} xref: FMA:72523 xref: HBA:12942 xref: MBA:1025 xref: neuronames:669 xref: NLXANAT:20081210 is_a: UBERON:0004070 ! cerebellum vermis lobule relationship: part_of UBERON:0004009 ! cerebellum posterior vermis property_value: RO:0002171 UBERON:0001063 {source="ABA"} property_value: RO:0002171 UBERON:0005347 {source="ABA"} property_value: RO:0002171 UBERON:0005348 {source="ABA"} property_value: RO:0002171 UBERON:0005350 {source="ABA"} property_value: RO:0002171 UBERON:0005351 {source="ABA"} property_value: UBPROP:0000008 "MP says not present in humans; however, we group based on synonymy from multiple sources" xsd:string [Term] id: UBERON:0005350 name: lobule simplex namespace: uberon subset: pheno_slim synonym: "hemispheric lobule VI" EXACT [NLXANAT:20081206] synonym: "lobule h VI of larsell" EXACT [FMA:72522] synonym: "lobule VI of hemisphere of cerebellum" RELATED [FMA:72522] synonym: "lobulus quadrangularis pars caudalis/posterior" EXACT OMO:0003011 [FMA:72522, FMA:TA] synonym: "lobulus quadrangularis pars inferoposterior" EXACT OMO:0003011 [FMA:72522, FMA:TA] synonym: "lobulus quadrangularis posterior" EXACT [NLXANAT:20081206] synonym: "lobulus quadrangularis posterior cerebelli [H VI]" EXACT OMO:0003011 [FMA:72522, FMA:TA] synonym: "lobulus simplex" EXACT [NLXANAT:20081206] synonym: "lobulus simplex cerebelli [h vi et vi]" EXACT OMO:0003011 [FMA:72522, FMA:TA] synonym: "posterior crescentic lobule of cerebellum" EXACT [FMA:72522] synonym: "semilunar lobule-1 (posterior)" EXACT [FMA:72522] synonym: "simple lobule" EXACT [MP:0010005] synonym: "simple lobule of cerebellum" EXACT [FMA:72522] synonym: "simple lobule of cerebellum [h VI and VI]" EXACT [FMA:72522] synonym: "simple lobule of the cerebellum" RELATED [BAMS:SIM] synonym: "simplex" EXACT OMO:0003011 [FMA:72522, FMA:TA] synonym: "simplex (hVI)" EXACT [NLXANAT:20081206] synonym: "simplex lobule" EXACT [NLXANAT:20081206] xref: BAMS:SIM xref: BAMS:Sim xref: BAMS:SL xref: DMBA:16940 xref: EMAPA:37401 {source="MA:th"} xref: FMA:72522 xref: MBA:1007 xref: neuronames:665 xref: NLXANAT:20081206 is_a: UBERON:0004003 ! cerebellum hemisphere lobule is_a: UBERON:0014648 ! hemisphere part of cerebellar posterior lobe relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum property_value: RO:0002171 UBERON:0001063 {source="ABA"} property_value: RO:0002171 UBERON:0005347 {source="ABA"} property_value: RO:0002171 UBERON:0005348 {source="ABA"} property_value: RO:0002171 UBERON:0005349 {source="ABA"} property_value: RO:0002171 UBERON:0005351 {source="ABA"} property_value: UBPROP:0000008 "MP says not present in humans; however, we group based on synonymy from multiple sources" xsd:string {source="MP:0010005"} [Term] id: UBERON:0005351 name: paraflocculus namespace: uberon subset: pheno_slim synonym: "cerebellar tonsil" EXACT [NLXANAT:20081212] synonym: "hemispheric lobule IX" RELATED INCONSISTENT [NLXANAT:20081212] synonym: "neuraxis paraflocculus" EXACT [FMA:83885] synonym: "parafloccular lobule of cerebellum" EXACT [ISBN:0123813611] synonym: "paraflocculus of cerebellum" EXACT [FMA:83885] synonym: "tonsil (HXI)" EXACT [NLXANAT:20081212] synonym: "tonsilla" EXACT [NLXANAT:20081212] xref: BAMS:CbT xref: BAMS:PFL xref: BAMS:PFl xref: DMBA:16945 xref: EMAPA:37402 {source="MA:th"} xref: FMA:278790 xref: FMA:83885 xref: MBA:1041 xref: neuronames:672 xref: NLXANAT:20081212 xref: SCTID:314174005 xref: SCTID:51969002 xref: Wikipedia:Cerebellar_tonsil is_a: UBERON:0004003 ! cerebellum hemisphere lobule is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe property_value: IAO:0000116 "consider separate class for IX." xsd:string property_value: RO:0002171 UBERON:0001063 {source="ABA"} property_value: RO:0002171 UBERON:0005347 {source="ABA"} property_value: RO:0002171 UBERON:0005348 {source="ABA"} property_value: RO:0002171 UBERON:0005349 {source="ABA"} property_value: RO:0002171 UBERON:0005350 {source="ABA"} property_value: UBPROP:0000008 "large in mouse, insignificant in humans" xsd:string [Term] id: UBERON:0005357 name: brain ependyma namespace: uberon def: "The ependymal cell layer that lines the brain ventricles." [http://orcid.org/0000-0002-6601-2165, ISBN:0387949542] subset: pheno_slim synonym: "ependyma of ventricular system of brain" EXACT [FMA:242837] xref: EMAPA:35183 xref: FMA:242837 xref: MA:0000809 xref: MESH:D004805 is_a: UBERON:0004670 ! ependyma relationship: part_of UBERON:0004086 ! brain ventricle property_value: UBPROP:0000012 "in FMA this is treated as part of the ependyma, but here we treat ependyma as a portion" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0005358 name: ventricle of nervous system namespace: uberon def: "A layer in the central nervous system that lines system of communicating cavities in the brain and spinal cord." [https://github.com/obophenotype/uberon/issues/300] synonym: "region of wall of ventricular system of neuraxis" RELATED [FMA:242770] synonym: "ventricular layer" EXACT [EMAPA:35209] xref: EMAPA:35209 xref: FMA:242770 relationship: part_of UBERON:0001016 ! nervous system property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0005359 name: spinal cord ependyma namespace: uberon def: "The ependymal cell layer that lines the spinal cord." [http://orcid.org/0000-0002-6601-2165, ISBN:0387949542] subset: pheno_slim synonym: "ependyma of central canal of spinal cord" EXACT [FMA:242839] synonym: "spinal cord ependymal layer" EXACT [MA:0001125] synonym: "spinal cord ventricular layer" RELATED [] xref: EMAPA:35791 xref: FMA:242839 xref: MA:0001125 xref: SCTID:369278000 is_a: UBERON:0004670 ! ependyma relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002291 ! central canal of spinal cord property_value: UBPROP:0000012 "in FMA this is treated as part of the ependyma, but here we treat ependyma as a portion" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0005360 name: inferior glossopharyngeal IX ganglion namespace: uberon def: "The lower group of sensory neuron cell bodies associated with the glossopharyngeal nerve[MP]. It is situated in a depression in the lower border of the petrous portion of the temporal bone[WP]." [MP:0001084, Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve] subset: human_reference_atlas subset: pheno_slim synonym: "extracraniale ganglion" EXACT [MP:0001084] synonym: "ganglion inferius (nervus glossopharygeus)" EXACT [FMA:53475] synonym: "ganglion inferius nervi glossopharyngei" RELATED OMO:0003011 [Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve] synonym: "ganglion inferius nervus glossopharyngei" EXACT OMO:0003011 [FMA:53475, FMA:TA] synonym: "ganglion of andersch" EXACT [FMA:53475] synonym: "ganglion petrosum" RELATED OMO:0003011 [Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve] synonym: "glossopharyngeal inferior ganglion" RELATED [EMAPA:17153] synonym: "glossopharyngeal IX inferior ganglion" RELATED [VHOG:0000743] synonym: "glossopharyngeal nerve inferior ganglion" EXACT [FMA:53475] synonym: "glossopharyngeal nerve petrous ganglion" EXACT [FMA:53475] synonym: "inferior ganglion of glossopharyngeal nerve" EXACT [FMA:53475] synonym: "inferior glossopharyngeal ganglion" EXACT [FMA:53475] synonym: "inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve" EXACT [MP:0001084] synonym: "ninth cranial nerve inferior ganglion" EXACT [FMA:53475] synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084] synonym: "petrous ganglion" RELATED [http://www.merriam-webster.com/medical/petrous%20ganglion, Wikipedia:File\:Gray791.png, Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve] xref: EHDAA2:0000711 xref: EMAPA:17153 xref: FMA:53475 xref: MA:0001078 xref: SCTID:66031007 xref: VHOG:0000743 xref: Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve is_a: UBERON:0001701 {source="FMA"} ! glossopharyngeal ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "We follow FMA and VHOG in making the relation subclass" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0005361 name: superior glossopharyngeal IX ganglion namespace: uberon def: "The upper ganglion of the glossopharyngeal nerve[MP]. is situated in the upper part of the groove in which the glossopharyngeal nerve is lodged during its passage through the jugular foramen. It is very small, and is usually regarded as a detached portion of the inferior ganglion." [MP:0001097, Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve] comment: Synonym modified from WP original subset: pheno_slim synonym: "Ehrenritter's ganglion" EXACT [FMA:53474] synonym: "ganglion superius (nervus glossopharyngeus)" EXACT [FMA:53474] synonym: "ganglion superius nervi glossopharyngei" RELATED OMO:0003011 [Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve] synonym: "ganglion superius nervus glossopharyngei" EXACT OMO:0003011 [FMA:53474, FMA:TA] synonym: "glossopharyngeal IX superior ganglion" RELATED [VHOG:0000744] synonym: "glossopharyngeal nerve jugular ganglion" EXACT [FMA:53474] synonym: "glossopharyngeal nerve superior ganglion" EXACT [FMA:53474] synonym: "glossopharyngeal superior ganglion" RELATED [EMAPA:17154] synonym: "intracranial ganglion" EXACT [MP:0001097] synonym: "jugular ganglion" RELATED [MP:0001097] synonym: "ninth cranial nerve superior ganglion" EXACT [FMA:53474] synonym: "superior ganglion of glossopharyngeal nerve" EXACT [FMA:53474] synonym: "superior glossopharyngeal ganglia" EXACT [MP:0001097] synonym: "superior glossopharyngeal ganglion" EXACT [FMA:53474] synonym: "superior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve" EXACT [MP:0001097] synonym: "superior petrosal ganglion" RELATED [Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve] xref: EHDAA2:0000712 xref: EHDAA:2842 xref: EMAPA:17154 xref: FMA:53474 xref: MA:0001079 xref: SCTID:280362000 xref: VHOG:0000744 xref: Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve is_a: UBERON:0001701 {source="FMA"} ! glossopharyngeal ganglion property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI [Term] id: UBERON:0005362 name: vagus X ganglion namespace: uberon def: "The group of sensory neuron cell bodies associated with the vagus nerve." [ISBN:0-683-40008-8, MP:0001100] subset: human_reference_atlas subset: pheno_slim synonym: "ganglion of vagus nerve" EXACT [FMA:53472] synonym: "gX" BROAD [ZFA:0007067] synonym: "right glossopharyngeal ganglion" EXACT [FMA:53472] synonym: "vagal ganglion" EXACT [ZFA:0007067] synonym: "vagus ganglion" EXACT [] synonym: "vagus neural ganglion" EXACT [FMA:53472] synonym: "vagus X" RELATED [EMAPA:16798] xref: EMAPA:16798 xref: FMA:53472 xref: MA:0001081 xref: SCTID:244452001 xref: TAO:0007067 xref: VHOG:0000684 xref: Wikipedia:Vagus_ganglion xref: ZFA:0007067 is_a: UBERON:0009127 {source="ZFA"} ! epibranchial ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005363 name: inferior vagus X ganglion namespace: uberon def: "The large group of sensory neuron cell bodies, anterior to the jugular vein, associated with the vagus nerve (tenth cranial nerve)." [ISBN:0-683-40008-8, MP:0001087, PMID:9362461] subset: efo_slim subset: human_reference_atlas subset: pheno_slim synonym: "ganglion inferius (nervus vagus)" EXACT [FMA:6230] synonym: "ganglion inferius nervi vagi" EXACT OMO:0003011 [Wikipedia:Inferior_ganglion_of_vagus_nerve] synonym: "ganglion inferius nervus vagi" EXACT OMO:0003011 [FMA:6230, FMA:TA] synonym: "ganglion nodosum" EXACT OMO:0003011 [Wikipedia:Inferior_ganglion_of_vagus_nerve] synonym: "inferior ganglion of vagus" EXACT [FMA:6230] synonym: "inferior ganglion of vagus nerve" EXACT [FMA:6230] synonym: "inferior vagus ganglion" RELATED [EMAPA:17155] synonym: "inferior vagus X" BROAD [EMAPA:17155] synonym: "nodose ganglia" RELATED OMO:0003004 [] synonym: "nodose ganglion" EXACT [FMA:6230] synonym: "tenth cranial nerve nodose ganglion" EXACT [FMA:6230] synonym: "vagus nerve inferior ganglion" EXACT [FMA:6230] synonym: "vagus nerve nodose ganglion" EXACT [FMA:6230] synonym: "vagus X inferior ganglion" RELATED [VHOG:0000685] xref: EFO:0002516 xref: EHDAA2:0004622 xref: EMAPA:17155 xref: FMA:6230 xref: MA:0001082 xref: MESH:D009620 xref: SCTID:14420006 xref: VHOG:0000685 xref: Wikipedia:Inferior_ganglion_of_vagus_nerve is_a: UBERON:0005362 ! vagus X ganglion property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000685", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005364 name: superior vagus X ganglion namespace: uberon def: "The upper ganglion of the vagus nerve located at the jugular foramen." [ISBN:0-683-40008-8, MP:0001101] subset: human_reference_atlas subset: pheno_slim synonym: "ganglion superius (nervus vagus)" EXACT [FMA:6229] synonym: "ganglion superius nervus vagi" EXACT OMO:0003011 [FMA:6229, FMA:TA] synonym: "gasserian ganglion" RELATED [EMAPA:17156] synonym: "jugular ganglion" RELATED [FMA:6229] synonym: "superior ganglion of vagus" EXACT [FMA:6229] synonym: "superior ganglion of vagus nerve" EXACT [FMA:6229] synonym: "superior vagus ganglion" EXACT [] synonym: "superior vagus X" BROAD [EMAPA:17156] synonym: "tenth cranial nerve jugular ganglion" EXACT [FMA:6229] synonym: "vagus nerve jugular ganglion" EXACT [FMA:6229] synonym: "vagus nerve superior ganglion" EXACT [FMA:6229] synonym: "vagus X superior ganglion" RELATED [VHOG:0000686] xref: EMAPA:17156 xref: FMA:6229 xref: MA:0001083 xref: SCTID:280197008 xref: VHOG:0000686 xref: Wikipedia:Superior_ganglion_of_vagus_nerve is_a: UBERON:0005362 ! vagus X ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005366 name: olfactory lobe namespace: uberon def: "The lobe at the anterior part of each cerebral hemisphere, responsible for olfactory functions." [UBERON:cjm] subset: efo_slim subset: pheno_slim xref: BTO:0001362 xref: EFO:0000108 xref: EHDAA2_RETIRED:0001294 xref: EHDAA:5480 xref: EMAPA:17778 xref: MA:0002413 xref: MIAA:0000116 xref: NCIT:C33204 xref: neuronames:2078 xref: UMLS:C0178780 {source="ncithesaurus:Olfactory_Lobe"} xref: VHOG:0000833 is_a: UBERON:0016526 ! lobe of cerebral hemisphere relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000001 "Part of the telencephalon, comprised of paired anterior outgrowths of either of the cerebral hemispheres in which the olfactory nerve exits. In Xenopus,the olfactory bulbs begin to fuse at NF stage 50, fusion is complete around NF stage 58. The cerebral vein loops around the olfactory bulb by NF stage 43[XAO:0004180]." xsd:string {source="XAO:0004180"} property_value: UBPROP:0000003 "(In mammals) Odorant detection is mediated by millions of olfactory sensory neurons located in the olfactory epithelium lining the nasal cavity. These neurons transmit sensory signals to the olfactory bulb of the brain, which in turn sends signals to the olfactory cortex.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000833", ontology="VHOG", source="DOI:10.1111/j.1753-4887.2004.tb00097.x Buck LB, Olfactory receptors and odor coding in mammals. Nutrition Reviews (2008)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005367 name: hippocampus granule cell layer namespace: uberon subset: pheno_slim synonym: "hippocampus granular layer" RELATED [] xref: EMAPA:35406 xref: MA:0000954 is_a: UBERON:0002305 ! layer of hippocampus property_value: IAO:0000116 "TODO - check this. The granule layer is typically in the dentate gyrus, under some definitions of hippocampus, the DG is included, thus making this layer a hippocampal layer" xsd:string [Term] id: UBERON:0005368 name: hippocampus molecular layer namespace: uberon def: "The most superficial stratum in the hippocampus. Here the perforant path fibers form synapses onto the distal, apical dendrites of pyramidal cells." [https://github.com/obophenotype/uberon/issues/1224, Wikipedia:Hippocampus_anatomy#Hippocampal_cells_and_layers] subset: pheno_slim synonym: "hippocampal molecular layer" EXACT [BIRNLEX:1211] synonym: "hippocampus stratum moleculare" EXACT [] synonym: "molecular layer of hippocampus" EXACT [BIRNLEX:1211, neuronames:1742] xref: BIRNLEX:1211 xref: EMAPA:35408 xref: MA:0000955 xref: neuronames:1742 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare [Term] id: UBERON:0005370 name: hippocampus stratum lacunosum namespace: uberon def: "A thin stratum in the hippocampus that is immediately deep to the molecular layer, and is superficial to the stratum radiatum." [https://github.com/obophenotype/uberon/issues/1224, Wikipedia:Hippocampus_anatomy#Hippocampal_cells_and_layers] comment: Due to its small size, it is often grouped together with stratum moleculare into a single stratum called stratum lacunosum-moleculare[WP] subset: pheno_slim synonym: "lacunar layer of hippocampus" EXACT [] xref: EMAPA:35410 xref: MA:0000957 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare property_value: UBPROP:0000010 "Like the SR, contains Schaffer collateral fibers, but it also contains perforant path fibers from the superficial layers of entorhinal cortex" xsd:string [Term] id: UBERON:0005371 name: hippocampus stratum oriens namespace: uberon def: "Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995)." [BIRNLEX:4113] subset: pheno_slim synonym: "gyrus cuneus" RELATED OMO:0003011 [NeuroNames:157] synonym: "oriens layer of hippocampus" EXACT [BIRNLEX:4113] synonym: "oriens layer of the hippocampus" EXACT [BIRNLEX:4113] synonym: "polymorphic layer of hippocampus" EXACT [BIRNLEX:4113] synonym: "polymorphic layer of the hippocampus" EXACT [BIRNLEX:4113] synonym: "stratum oriens" EXACT [BIRNLEX:4113] synonym: "stratum oriens hippocampi" EXACT OMO:0003011 [FMA:83893, FMA:TA] xref: BAMS:Or xref: BIRNLEX:4113 xref: EMAPA:35412 xref: FMA:83893 xref: MA:0000958 xref: neuronames:157 {source="BIRNLEX:4113"} is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0005372 name: hippocampus stratum radiatum namespace: uberon def: "The layer located immediately above the pyramidal cell layer in CA2 and CA1 and superficial to the stratum lucidum in CA3. Suprapyramidal region in which CA3 to CA3 associational connections and CA3 to CA1 Schaffer collateral connections are located." [BIRNLEX:1298] subset: pheno_slim synonym: "radiate layer of hippocampus" EXACT [FMA:83894] synonym: "stratum radiatum" EXACT [BIRNLEX:1298] synonym: "stratum radiatum hippocampi" EXACT OMO:0003011 [FMA:83894, FMA:TA] synonym: "stratum radiatum of the hippocampus" RELATED [BAMS:Rad] xref: BAMS:Rad xref: BIRNLEX:1298 xref: EMAPA:35413 xref: FMA:83894 xref: MA:0000959 xref: neuronames:158 {source="BIRNLEX:1298"} is_a: UBERON:0002305 ! layer of hippocampus property_value: UBPROP:0000010 "contains septal and commissural fibers. It also contains Schaffer collateral fibers, which are the projection forward from CA3 to CA1. Some interneurons that can be found in more superficial layers can also be found here, including basket cells, bistratified cells, and radial trilaminar cells" xsd:string [Term] id: UBERON:0005373 name: spinal cord dorsal column namespace: uberon def: "The wedge-shaped fiber bundle of white matter in the dorsomedial side of the spinal cord that is made up of the fasciculus gracilis and fasciculus cuneatus; it is part of the ascending posterior column-medial lemniscus pathway that is important for well-localized fine touch and conscious proprioception." [ISBN:0-683-40008-8, ISBN:0940780577, MP:0009677] subset: pheno_slim synonym: "dorsal column" EXACT [] synonym: "dorsal column of spinal cord" EXACT [] synonym: "dorsal column system" RELATED [BAMS:dc] synonym: "dorsal columns" RELATED [BAMS:dc] synonym: "posterior column" EXACT [Wikipedia:Posterior_column] synonym: "spinal cord posterior column" EXACT [] xref: BAMS:dc xref: EV:0100317 xref: MA:0002749 xref: MBA:514 xref: NCIT:C33355 xref: neuronames:2681 xref: UMLS:C0458459 {source="ncithesaurus:Posterior_Column"} xref: VHOG:0001623 xref: Wikipedia:Posterior_column is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0002258 ! dorsal funiculus of spinal cord property_value: IAO:0000116 "TODO - relationship with dorsal horn?" xsd:string property_value: UBPROP:0000001 "The dorsolateral ridge of gray matter in each lateral half of the spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001623", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/posterior+column+of+spinal+cord"} property_value: UBPROP:0000009 "The dorsal column is a part of the spinal cord which is responsible for transporting sensory input from the body to the cerebral cortex. This part of the spinal cord is key in perceiving fine touch, such as that used to distinguish textures, along with vibration. The dorsal column also contributes to the body's system of proprioception, used to orient the body in space and to coordinate muscle movements, given information about the body's position" xsd:string [Term] id: UBERON:0005374 name: spinal cord lateral column namespace: uberon def: "The region of white matter of the spinal cord that is located between the dorsal and ventral spinal roots." [ISBN:0-683-40008-8, MP:0009678] subset: pheno_slim synonym: "lateral column" RELATED [] synonym: "lateral columns" RELATED OMO:0003004 [ZFA:0000531] xref: EV:0100322 xref: MA:0002750 xref: neuronames:1673 xref: TAO:0000531 xref: VHOG:0001621 xref: ZFA:0000531 is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0002179 {notes="checkme"} ! lateral funiculus of spinal cord relationship: part_of UBERON:0002318 ! white matter of spinal cord property_value: IAO:0000116 "TODO - check relationship between column and funiculus. Also check white vs grey matter. See ventral column. Note also ZFA term 'lateral column' is part of reticular formation" xsd:string [Term] id: UBERON:0005375 name: spinal cord ventral column namespace: uberon def: "The area of white matter of the spinal cord located on either side of the ventral (anterior) medial fissure." [ISBN:0-683-40008-8, MP:0009679] subset: pheno_slim synonym: "anterior column" EXACT [] synonym: "spinal cord anterior column" EXACT [] synonym: "ventral column" EXACT [] xref: EV:0100326 xref: MA:0002751 xref: neuronames:269 xref: VHOG:0001622 is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0002180 ! ventral funiculus of spinal cord property_value: UBPROP:0000001 "The ventral ridge of gray matter in each half of the spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001622", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/anterior+column+of+spinal+cord"} property_value: UBPROP:0000012 "in MA, this is a subclass of white matter, but in WP/Gray's, the anterior column is a synonym of the grey matter section. is this the same as funiculus? See lateral column." xsd:string {external_ontology="MA"} [Term] id: UBERON:0005376 name: olfactory bulb external plexiform layer namespace: uberon def: "Cytoarchitectural part of the olfactory bulb, lying superior to the mitral cell layer and inferior to the glomerular layer. The EPL is mostly neuropil composed almost entirely of mitral and tulfted cell dendrites and granule cell dendrites and their synaptic inputs." [NLXANAT:20090403] subset: pheno_slim synonym: "EPL" RELATED OMO:0003000 [BTO:0001319] synonym: "external plexiform layer" BROAD [BTO:0001319] synonym: "external plexiform layer of the olfactory bulb" RELATED [BAMS:EPl] synonym: "OB outer plexiform layer" RELATED [DMBA:OB-Opl] synonym: "olfactory bulb main external plexiform layer" EXACT [NLXANAT:20090403] xref: BAMS:EPl xref: BTO:0001319 xref: DMBA:15913 xref: EMAPA:35607 xref: MA:0000969 xref: NLXANAT:20090403 is_a: UBERON:0009950 ! olfactory bulb plexiform layer [Term] id: UBERON:0005377 name: olfactory bulb glomerular layer namespace: uberon def: "The glomerular layer is the most superficial layer, consisting of mitral cell dendritic arborizations (glomeruli), olfactory nerve fibers, and periglomerular cells. Periglomerular cells contact multiple mitral cell dendrites within the glomeruli and provide lateral inhibition of neighboring glomeruli while allowing excitation of a specific mitral cell dendritic tree. Each mitral cell is contacted by at least 1000 olfactory nerve fibers[BTO]. Portion of tissue which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb[ZFA]." [BTO:0001317, https://github.com/obophenotype/uberon/issues/260] subset: pheno_slim subset: vertebrate_core synonym: "glomerular layer" BROAD [BTO:0001317, ZFA:0000357] synonym: "glomerular layer of the olfactory bulb" RELATED [BAMS:Gl] synonym: "olfactory bulb main glomerulus" EXACT [NLXANAT:1005007] synonym: "stratum glomerulosum bulbi olfactorii" EXACT [ZFA:0000357] xref: BAMS:Gl xref: BTO:0001317 xref: DHBA:11327 xref: EMAPA:35608 xref: MA:0000970 xref: MBA:212 xref: neuronames:2710 xref: NLXANAT:1005007 xref: TAO:0000357 xref: ZFA:0000357 is_a: UBERON:0004001 ! olfactory bulb layer [Term] id: UBERON:0005378 name: olfactory bulb granule cell layer namespace: uberon def: "The granule cell layer contains multiple small round neurons that lack axons. Long dendritic processes of the neurons reach the more superficial layers and inhibit mitral cells and tufted cells. Small distal processes make contacts with the exiting mitral cell axons." [BTO:0001327] subset: pheno_slim synonym: "accessory olfactory bulb granule cell layer" RELATED [BAMS:gr] synonym: "granule cell layer" BROAD [BTO:0001327] synonym: "granule layer of main olfactory bulb" RELATED [NLXANAT:20090404] synonym: "main olfactory bulb granule cell layer" RELATED [BAMS:gr, BAMS:MOBgr] synonym: "main olfactory bulb, granule layer" RELATED [BAMS:MOBgr] synonym: "olfactory bulb main granule cell layer" EXACT [NLXANAT:20090404] xref: BAMS:MOBgr xref: BTO:0001327 xref: DMBA:15909 xref: EMAPA:35609 xref: MA:0000971 xref: MBA:220 xref: neuronames:2714 xref: NLXANAT:20090404 is_a: UBERON:0004001 ! olfactory bulb layer [Term] id: UBERON:0005379 name: olfactory bulb internal plexiform layer namespace: uberon subset: pheno_slim synonym: "inner plexiform layer of the main olfactory bulb" RELATED [NeuroNames:2713] synonym: "internal plexiform layer" EXACT [BTO:0001320] synonym: "internal plexiform layer of olfactory bulb" RELATED [] synonym: "internal plexiform layer of the olfactory bulb" RELATED [BAMS:IPl] synonym: "main olfactory bulb, inner plexiform layer" RELATED [NeuroNames:2713] xref: BAMS:IPl xref: BTO:0001320 xref: DHBA:11330 xref: DMBA:15910 xref: EMAPA:35610 xref: MA:0000972 xref: MBA:228 xref: neuronames:2713 is_a: UBERON:0009950 ! olfactory bulb plexiform layer [Term] id: UBERON:0005380 name: olfactory bulb subependymal zone namespace: uberon def: "The region of mitotically active layer of cells surrounding the lateral brain ventricles that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells, that produce neurons that migrate to the olfactory bulb." [MGI:csmith, MP:0009952] subset: pheno_slim xref: EMAPA:35612 xref: MA:0000974 is_a: UBERON:0004001 ! olfactory bulb layer [Term] id: UBERON:0005381 name: dentate gyrus granule cell layer namespace: uberon def: "Granule cell layer is also called the DG principal cell layer. This one of the three layers of dentate gyrus that lies deep to the molecular layer and is made of densely packed layer that is four to eight granule cells thick." [BIRNLEX:4129] subset: pheno_slim synonym: "dentate gyrus, granule cell layer" RELATED [BAMS:DG-sg] synonym: "DG granule cell layer" EXACT [BIRNLEX:4129] synonym: "granular layer of dentate gyrus" EXACT [FMA:83146] synonym: "granular layer of the dentate gyrus" RELATED [BAMS:GrDG] synonym: "stratum granulare gyri dentati" EXACT OMO:0003011 [FMA:83146, FMA:TA] xref: BAMS:DG-sg xref: BAMS:GrDG xref: BAMS:sg xref: BIRNLEX:4129 xref: DMBA:16122 xref: EMAPA:35276 xref: FMA:83146 xref: MA:0000946 xref: MBA:632 xref: neuronames:2122 is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0005382 name: dorsal striatum namespace: uberon def: "Dorsal components of the striatum comprising the caudate nucleus and the putamen, in species that have distinct nuclei; the caudoputamen in species which don't." [NLXANAT:1010001] synonym: "caudoputamen" RELATED [NLXANAT:100312] synonym: "corpus striatum" RELATED [Wikipedia:Dorsal_striatum] synonym: "dorsal basal ganglia" RELATED [BTO:0004701] synonym: "dorsal basal ganglion" RELATED [BTO:0004701] synonym: "striated body" RELATED [Wikipedia:Dorsal_striatum] synonym: "striatum dorsal region" EXACT [ABA:STRd] synonym: "striatum dorsale" RELATED [BTO:0004701] xref: BAMS:Dorsal_striatum xref: BAMS:STRd xref: BAMS:StrD xref: BTO:0004701 xref: EMAPA:36575 xref: FMA:77620 xref: MA:0002971 xref: MBA:485 xref: neuronames:2340 xref: NLXANAT:1010001 xref: PBA:10081 xref: Wikipedia:Dorsal_striatum is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0002435 {source="NIFSTD"} ! striatum property_value: UBPROP:0000001 "According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum" xsd:string {source="Wikipedia:Dorsal_striatum"} property_value: UBPROP:0000001 "According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (putamen and the globus pallidus) and the caudate nucleus" xsd:string {source="Wikipedia:Dorsal_striatum"} property_value: UBPROP:0000001 "It may also refer to both the basal ganglia and the internal capsule collectively." xsd:string {source="Wikipedia:Dorsal_striatum"} property_value: UBPROP:0000001 "It may also refer to the putamen and caudate collectively." xsd:string {source="Wikipedia:Dorsal_striatum"} property_value: UBPROP:0000001 "The term dorsal striatum refers to a composite structure of the endbrain that is defined in the striatopallidal system by connectivity and neurochemical staining. It includes most of the striatum ( Heimer-1995 ). The boundary between this structure and the ventral striatum is indistinct in sections stained for Nissl substance." xsd:string {source="neuronames:2340"} [Term] id: UBERON:0005383 name: caudate-putamen namespace: uberon def: "Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure." [NLXANAT:100312] subset: efo_slim subset: pheno_slim synonym: "caudate putamen" EXACT [] synonym: "caudate putamen" RELATED [NLXANAT:100312] synonym: "caudate putamen (striatum)" RELATED [BAMS:CPu] synonym: "caudate-putamen" RELATED [NLXANAT:100312] synonym: "caudateputamen" EXACT [NLXANAT:100312] synonym: "caudateputamen" RELATED [NLXANAT:100312] synonym: "caudoputamen" EXACT [NLXANAT:100312] synonym: "dorsal striatum" RELATED [NLXANAT:100312] synonym: "neostriatum" RELATED [NLXANAT:100312] synonym: "striatum" RELATED [NLXANAT:100312] xref: BAMS:CP xref: BAMS:CPu xref: BM:Tel-C-Pu xref: BTO:0000212 xref: EFO:0001912 xref: EMAPA:19095 xref: MA:0000893 xref: MBA:672 xref: NLXANAT:100312 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0005382 {source="MA"} ! dorsal striatum property_value: IAO:0000116 "check - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)" xsd:string property_value: IAO:0000116 "we do not currently place rodent-specific taxon constraints here as this would cause taxon violations. There is an argument for merging this into dorsal striatum and treating the distinction as phenotypic" xsd:string property_value: UBPROP:0000011 "In the human, histologically the caudate nucleus and putamen are identically and share a common embryological origin[ISBN:0123813611]" xsd:string [Term] id: UBERON:0005387 name: olfactory glomerulus namespace: uberon alt_id: UBERON:0011916 def: "One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]." [Dorlands_Medical_Dictionary:MerckMedicus, Wikipedia:Glomerulus_(olfaction)] synonym: "glomerulus of olfactory bulb" EXACT [OBOL:automatic] synonym: "olfactory bulb glomerulus" EXACT [OBOL:automatic] synonym: "olfactory glomeruli" EXACT OMO:0003004 [] xref: BTO:0003653 xref: NIF_Subcellular:nlx_subcell_20090503 xref: Wikipedia:Glomerulus_(olfaction) xref: ZFA:0005661 is_a: UBERON:0001047 ! neural glomerulus relationship: part_of UBERON:0002264 ! olfactory bulb relationship: part_of UBERON:0005377 {source="ZFA"} ! olfactory bulb glomerular layer property_value: UBPROP:0000001 "Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve[ZFA]." xsd:string {source="ZFA:0005661", source="ZFIN:ZDB-PUB-120516-14"} [Term] id: UBERON:0005388 name: photoreceptor array namespace: uberon def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165] synonym: "light-sensitive tissue" EXACT [] xref: FBbt:00004200 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0005390 name: cortical layer I namespace: uberon def: "The most superficial layer of the neocortex characterized by a paucity of cell bodies." [NLXANAT:090807] synonym: "cerebral cortex, layer 1" EXACT [ABA:CTX1] synonym: "lamina molecularis isocorticis [lamina I]" EXACT OMO:0003011 [FMA:83900, FMA:TA] synonym: "layer 1 of neocortex" EXACT [NLXANAT:090807] synonym: "layer I of neocortex" EXACT [NLXANAT:090807] synonym: "molecular layer" RELATED [] synonym: "molecular layer of cerebral cortex" EXACT [ncithesaurus:Molecular_layer] synonym: "molecular layer of isocortex [layer i]" EXACT [FMA:83900] synonym: "molecular layer of neocortex" EXACT [FMA:83900, NLXANAT:090807] synonym: "neocortex layer 1" EXACT [NLXANAT:090807] synonym: "neocortex layer I" EXACT [NLXANAT:090807] synonym: "neocortex molecular layer" EXACT [NLXANAT:090807] synonym: "neocortex plexiform layer" EXACT [NLXANAT:090807] synonym: "plexiform layer" RELATED [] synonym: "plexiform layer of neocortex" EXACT [NLXANAT:090807] xref: ABA:CTX1 xref: BTO:0004906 xref: EMAPA:35255 xref: FMA:83900 xref: MA:0000897 xref: NCIT:C33137 xref: neuronames:2444 xref: NLXANAT:090807 xref: PBA:294021786 xref: UMLS:C1709063 {source="ncithesaurus:Molecular_Layer"} is_a: UBERON:0002301 ! layer of neocortex [Term] id: UBERON:0005391 name: cortical layer II namespace: uberon def: "Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies." [NLXANAT:090808] synonym: "cerebral cortex, layer 2" EXACT [ABA:CTX2] synonym: "EGL" RELATED OMO:0003000 [] synonym: "external granular cell layer" RELATED [] synonym: "external granular layer" RELATED [] synonym: "external granular layer of cerebral cortex" RELATED [] synonym: "external granular layer of isocortex [layer II]" EXACT [FMA:77804] synonym: "external granular layer of neocortex" EXACT [FMA:77804] synonym: "external granule cell layer" RELATED [] synonym: "external granule cell layer of neocortex" EXACT [NLXANAT:090808] synonym: "granule cell layer of cerebral cortex" RELATED [] synonym: "lamina granularis externa isocorticis [lamina ii]" EXACT OMO:0003011 [FMA:77804, FMA:TA] synonym: "layer II of neocortex" EXACT [NLXANAT:090808] synonym: "neocortex layer 2" EXACT [NLXANAT:090808] synonym: "neocortex layer II" EXACT [NLXANAT:090808] xref: ABA:CTX2 xref: EMAPA:35256 xref: FMA:77804 xref: MA:0000898 xref: NCIT:C32557 xref: neuronames:2446 xref: NLXANAT:090808 xref: PBA:294021800 xref: UMLS:C1517039 {source="ncithesaurus:External_Granular_Layer"} is_a: UBERON:0002301 ! layer of neocortex [Term] id: UBERON:0005392 name: cortical layer III namespace: uberon def: "Layer of neocortex lying deep to the external granule cell layer defined cytoarchitecturally by numerous small pyramidal neurons." [NLXANAT:090809] synonym: "cerebral cortex, layer 3" EXACT [ABA:CTX3] synonym: "external pyramidal cell layer" EXACT [FMA:77810] synonym: "external pyramidal cell layer of neocortex" EXACT [NLXANAT:090809] synonym: "external pyramidal layer of cerebral cortex" RELATED [ncithesaurus:External_Pyramidal_Cell_Layer] synonym: "external pyramidal layer of isocortex [layer iii]" EXACT [FMA:77810] synonym: "external pyramidal layer of neocortex" EXACT [FMA:77810] synonym: "isocortex, deep supragranular pyramidal layer" RELATED [NeuroNames:2448] synonym: "lamina pyramidalis externa" RELATED OMO:0003011 [NeuroNames:2448] synonym: "lamina pyramidalis externa isocorticis [lamina iii]" EXACT OMO:0003011 [FMA:77810, FMA:TA] synonym: "layer 3 of neocortex" EXACT [NLXANAT:090809] synonym: "layer III of neocortex" EXACT [NLXANAT:090809] synonym: "layer of medium-sized and large pyramidal cells" RELATED [NeuroNames:2448] synonym: "neocortex external pyramidal cell layer" EXACT [NLXANAT:090809] synonym: "neocortex layer 3" EXACT [NLXANAT:090809] synonym: "neocortex layer III" EXACT [NLXANAT:090809] synonym: "pyramidal layer" RELATED [] xref: ABA:CTX3 xref: EMAPA:35257 xref: FMA:77810 xref: MA:0000899 xref: NCIT:C32571 xref: neuronames:2448 xref: NLXANAT:090809 xref: PBA:294021824 xref: UMLS:C1517046 {source="ncithesaurus:External_Pyramidal_Cell_Layer"} is_a: UBERON:0002301 ! layer of neocortex [Term] id: UBERON:0005393 name: cortical layer IV namespace: uberon def: "Layer of neocortex lying deep to the external pyramidal cell layer defined cytoarchitecturally by the presence of numerous small cells." [NLXANAT:090810] synonym: "cerebral cortex, layer 4" EXACT [ABA:CTX4] synonym: "internal granular layer" RELATED [] synonym: "internal granular layer of isocortex [layer iv]" EXACT [FMA:77811] synonym: "internal granular layer of neocortex" EXACT [FMA:77811] synonym: "internal granule cell layer of neocortex" EXACT [NLXANAT:090810] synonym: "lamina granularis interna isocorticis [lamina iv]" EXACT OMO:0003011 [FMA:77811, FMA:TA] synonym: "layer 4 of neocortex" EXACT [NLXANAT:090810] synonym: "layer IV of neocortex" EXACT [NLXANAT:090810] synonym: "neocortex internal granule cell layer" EXACT [NLXANAT:090810] synonym: "neocortex layer 4" EXACT [NLXANAT:090810] synonym: "neocortex layer IV" EXACT [NLXANAT:090810] synonym: "neocortical internal granule cell layer" EXACT [NLXANAT:090810] synonym: "neocortical layer IV" EXACT [NLXANAT:090810] xref: ABA:CTX4 xref: EMAPA:35258 xref: FMA:77811 xref: MA:0000900 xref: NCIT:C32844 xref: neuronames:2449 xref: NLXANAT:090810 xref: PBA:294021852 xref: UMLS:C1512872 {source="ncithesaurus:Internal_Granular_Layer"} is_a: UBERON:0002301 ! layer of neocortex property_value: UBPROP:0000003 "..." xsd:string {source="PMID:23027930"} property_value: UBPROP:0000003 "Relatively undeveloped in some mammals such as the tenrec." xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0005394 name: cortical layer V namespace: uberon def: "Layer of neocortex lying deep to the internal granule cell layer (layer 4) defined cytoarchitecturally by the predominance of large pyramidal cell bodies." [NLXANAT:090811] synonym: "betz' cells" EXACT [FMA:77812] synonym: "cerebral cortex, layer 5" EXACT [ABA:CTX5] synonym: "deep layer of large pyramidal cells" RELATED [NeuroNames:2450] synonym: "ganglionic layer" RELATED [] synonym: "ganglionic layer of cerebral cortex" RELATED [] synonym: "inner layer of large pyramidal cells" RELATED [NeuroNames:2450] synonym: "internal pyramidal cell layer of neocortex" EXACT [NLXANAT:090811] synonym: "internal pyramidal layer" RELATED [NeuroNames:2450] synonym: "internal pyramidal layer of isocortex [layer v]" EXACT [FMA:77812] synonym: "internal pyramidal layer of neocortex" EXACT [FMA:77812] synonym: "isocortex, infragranular pyramidal layer" RELATED [NeuroNames:2450] synonym: "lamina ganglionaris" RELATED OMO:0003011 [NeuroNames:2450] synonym: "lamina pyramidalis interna" RELATED OMO:0003011 [NeuroNames:2450] synonym: "lamina pyramidalis interna isocorticis [lamina v]" EXACT OMO:0003011 [FMA:77812, FMA:TA] synonym: "layer 5 of neocortex" EXACT [NLXANAT:090811] synonym: "layer V of neocortex" EXACT [NLXANAT:090811] synonym: "neocortex internal pyramidal cell layer" EXACT [NLXANAT:090811] synonym: "neocortex layer 5" EXACT [NLXANAT:090811] synonym: "neocortex layer V" EXACT [NLXANAT:090811] synonym: "neocortical layer 5" EXACT [NLXANAT:090811] synonym: "neocortical layer V" EXACT [NLXANAT:090811] xref: ABA:CTX5 xref: EMAPA:35259 xref: FMA:77812 xref: MA:0000901 xref: NCIT:C32653 xref: neuronames:2450 xref: NLXANAT:090811 xref: PBA:294021878 xref: UMLS:C1517447 {source="ncithesaurus:Ganglionic_Layer"} is_a: UBERON:0002301 ! layer of neocortex [Term] id: UBERON:0005395 name: cortical layer VI namespace: uberon def: "Innermost layer of neocortex lying deep to the internal pyramidal cell layer defined cytoarchitecturally by cells of varying size." [NLXANAT:090812] synonym: "cerebral cortex, layer 6" EXACT [ABA:CTX6] synonym: "fusiform layer" RELATED [NeuroNames:2451] synonym: "isocortex, polymorph layer" RELATED [NeuroNames:2451] synonym: "lamina multiformis" RELATED OMO:0003011 [NeuroNames:2451] synonym: "lamina multiformis isocorticis [lamina vi]" EXACT OMO:0003011 [FMA:77805, FMA:TA] synonym: "layer VI of neocortex" EXACT [NLXANAT:090812] synonym: "multiform layer" RELATED [NeuroNames:2451] synonym: "multiform layer of isocortex [layer vi]" EXACT [FMA:77805] synonym: "multiform layer of neocortex" EXACT [FMA:77805, NLXANAT:090812] synonym: "neocortex layer 6" EXACT [NLXANAT:090812] synonym: "neocortex layer VI" EXACT [NLXANAT:090812] synonym: "neocortex multiform layer" EXACT [NLXANAT:090812] synonym: "neocortical layer 6" EXACT [NLXANAT:090812] synonym: "neocortical layer VI" EXACT [NLXANAT:090812] synonym: "pleiomorphic layer of neocortex" EXACT [NLXANAT:090812] synonym: "spindle cell layer" RELATED [NeuroNames:2451] xref: ABA:CTX6 xref: EMAPA:35260 xref: FMA:77805 xref: MA:0000902 xref: neuronames:2451 xref: NLXANAT:090812 xref: PBA:294021896 is_a: UBERON:0002301 ! layer of neocortex [Term] id: UBERON:0005397 name: brain arachnoid mater namespace: uberon def: "An arachnoid mater that surrounds a brain." [OBOL:automatic] synonym: "arachnoidea mater cranialis" EXACT OMO:0003011 [FMA:83981, FMA:TA] synonym: "arachnoidea mater encephali" EXACT OMO:0003011 [FMA:83981, FMA:TA] synonym: "brain arachnoid matter" EXACT [MA:0000814] synonym: "cranial arachnoid mater" EXACT [FMA:83981] xref: EMAPA:32661 xref: FMA:83981 xref: MA:0000814 xref: NCIT:C49331 xref: UMLS:C1707346 xref: VHOG:0000230 is_a: UBERON:0002362 ! arachnoid mater is_a: UBERON:0003547 ! brain meninx relationship: part_of UBERON:0003547 ! brain meninx property_value: UBPROP:0000001 "The middle membrane of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000230", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/arachnoid+mater"} property_value: UBPROP:0000003 "In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000230", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.639", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005400 name: telencephalon arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a telencephalon." [OBOL:automatic] synonym: "telencephalon arachnoid matter" EXACT [MA:0000980] xref: EMAPA:17775 xref: MA:0000980 is_a: UBERON:0003289 ! meninx of telencephalon is_a: UBERON:0003556 ! forebrain arachnoid mater relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0005401 name: cerebral hemisphere gray matter namespace: uberon def: "A gray matter that is part of a cerebral hemisphere." [OBOL:automatic] synonym: "cerebral gray matter" EXACT [BTO:0000823] synonym: "cerebral grey matter" EXACT [MA:0000944] synonym: "cerebral hemisphere grey matter" EXACT [] xref: BTO:0000823 xref: CALOHA:TS-2361 xref: EMAPA:37477 {source="MA:th"} xref: FMA:61821 xref: MA:0000944 is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: UBPROP:0000012 "BTO may actually be a more generic structure; FMA may represent a more specific structure. Consider merging with gray matter of telencephalon" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0005403 name: ventral striatum namespace: uberon def: "A composite structure of the telencephalon that is defined in the striatopallidal system by connectivity and neurochemical staining. It includes the nucleus accumbens, the most ventral portions of the caudate nucleus and the putamen, the rostrolateral portion of the anterior perforated substance, the islands of Calleja and a rostral subcommissural portion of substantia innominata. The boundary between the ventral striatum and dorsal striatum is indistinct in sections stained for Nissl substance (Heimer-1995; adapted from Brain Info)." [NLX:57107] subset: efo_slim subset: pheno_slim synonym: "striatum ventral region" EXACT [ABA:STRv] synonym: "striatum ventrale" RELATED [BTO:0004702] xref: BAMS:STRv xref: BAMS:StrV xref: BAMS:Ventral_striatum xref: BTO:0004702 xref: DMBA:15858 xref: EFO:0001936 xref: EMAPA:36576 xref: FMA:77614 xref: MA:0002972 xref: MBA:493 xref: MESH:D066328 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2341 xref: NLX:57107 xref: PBA:10091 xref: Wikipedia:Ventral_striatum is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0002435 {source="MA"} ! striatum property_value: UBPROP:0000001 "The term ventral striatum refers to a composite structure of the endbrain that is defined in the striatopallidal system by connectivity and neurochemical staining. It includes the nucleus accumbens, the most ventral portions of the caudate nucleus and the putamen, the rostrolateral portion of the olfactory tubercle, the islands of Calleja and a rostral subcommissural portion of substantia innominata. The boundary between the ventral striatum and dorsal striatum is indistinct in sections stained for Nissl substance ( Heimer-1995 )." xsd:string {source="neuronames:2341"} [Term] id: UBERON:0005407 name: sublingual ganglion namespace: uberon def: "The small parasympathetic ganglion found anterior to the submandibular gland that provides postsynaptic fibers to the sublingual gland." [ISBN:0-683-40008-8, MP:0010105] subset: pheno_slim xref: EHDAA2:0001938 xref: EHDAA:10101 xref: FMA:77591 xref: MA:0002982 is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0000011 {source="MP"} ! parasympathetic nervous system [Term] id: UBERON:0005408 name: circumventricular organ namespace: uberon def: "Any of any of the secretory or sensory organs located in the brain region around or in relation to the ventricular system that are characterized by extensive vasculature and a lack of a normal blood brain barrier (BBB) and allow for the linkage between the central nervous system and peripheral blood flow." [MP:0013562] subset: pheno_slim synonym: "circumventricular organ" EXACT [NLXANAT:20090312] synonym: "circumventricular organ of neuraxis" EXACT [FMA:84081] synonym: "CVO" EXACT OMO:0003000 [NLXANAT:20090312] xref: BTO:0006267 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35243 xref: FMA:84081 xref: MA:0002942 xref: MESH:D066280 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1242 xref: NLXANAT:20090312 xref: Wikipedia:Circumventricular_organs is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png" xsd:anyURI property_value: UBPROP:0000008 "All vertebrates possess at least 4 circumventricular organs (including the hypothalamus) which can monitor the contents of the cerebrospinal fluid and secrete additional substances into it. (Butler, 1996, p. 330)" xsd:string property_value: UBPROP:0000010 "CVOs contain neural tissue and are an integral part of neuroendocrine function; all of the CVOs, besides the subcommissural organ, contain extensive vasculature and fenestrated capillaries which leads to a leaky BBB at the site of the organs; the lack of a BBB allows CVOs to act as an alternative route for peptides and hormones in the neural tissue to the peripheral blood stream, while still protecting it from toxic substances" xsd:string [Term] id: UBERON:0005412 name: optic fissure namespace: uberon def: "Groove that is in the developing ventral optic cup and through which blood vessels pass to the enclosed mesenchyme[ZFA]. a ventral fissure in the developing optic cup through which blood vessels pass to the enclosed mesenchyme[Free online medical dictionary]." [http://medical-dictionary.thefreedictionary.com/optic+fissure, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3083162&group_id=36855, Wikipedia:Choroid_fissure, ZFA:0001284] comment: Develeopment notes: As the eye starts to develop, a gap opens on the underside of each eye bud. This gap provides a way for the developing eye to be nourished. This gap, called the optic fissure, has to close before the eye is fully developed. Coloboma is the incomplete closer of the optic fissure subset: pheno_slim subset: vertebrate_core synonym: "choroid fissure" RELATED [MA:0001305, XAO:0000474, ZFA:0001284] synonym: "choroid fissure - optic fissure" EXACT [VHOG:0000655] synonym: "optic fissures" EXACT OMO:0003004 [ZFA:0001284] synonym: "optic stalk fissure" EXACT [EHDAA2:0001319] synonym: "ventral choroidal fissure" RELATED [XAO:0000474] xref: AAO:0011026 xref: EHDAA2:0001319 xref: EHDAA:4759 xref: EMAPA:17166 xref: MA:0001305 xref: RETIRED_EHDAA2:0000249 xref: SCTID:361508004 xref: TAO:0001284 xref: VHOG:0000655 xref: Wikipedia:Choroid_fissure xref: XAO:0000474 xref: ZFA:0001284 relationship: part_of UBERON:0003098 {source="EHDAA2"} ! optic stalk property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/98/Gray865.png" xsd:anyURI property_value: UBPROP:0000001 "A break in the continuity of the optic cup where the two sides of the cup meet.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011026", ontology="AAO", source="ISBN:0815318960"} property_value: UBPROP:0000003 "The folded arrangement of the vertebrate retina and RPE [retinal pigment epithelial] provides an evolutionary explanation for the occurrence of the choroid fissure, as proposed more than a century ago. Early in evolution, before the optic cup invaginated, the axons from retinal ganglion cells would simply have run over the surface of the structure. Hence, one can view the optic nerve as having acted rather like a rope in linking the retina to higher centres: the developing eye cup has simply wrapped around this 'rope', and the developing axons have thereby not needed to penetrate the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000655", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005413 name: spinocerebellar tract namespace: uberon def: "This tract conveys interoceptive, proprioceptive, and exteroceptive information from the body's internal organs, and from the trunk, extremities, and neck region to the Cerebellum." [NLXANAT:1005036] subset: pheno_slim xref: BAMS:sc xref: DHBA:12749 xref: GAID:733 xref: MBA:85 xref: MESH:D020824 xref: neuronames:1978 xref: NLX:60355 xref: NLXANAT:1005036 xref: Wikipedia:Spinocerebellar_tract is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002316 ! white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: UBPROP:0000001 "The spinocerebellar tract is a set of axonal fibers originating in the spinal cord and terminating in the ipsilateral cerebellum. This tract conveys information to the cerebellum about limb and joint position[Wikipedia:Spinocerebellar_tract]." xsd:string {source="Wikipedia:Spinocerebellar_tract"} [Term] id: UBERON:0005430 name: ansa cervicalis namespace: uberon def: "A loop of nerves that are part of the cervical plexus that lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle." [Wikipedia:Ansa_cervicalis] synonym: "ansa cervicalis" EXACT OMO:0003011 [Wikipedia:Ansa_cervicalis] synonym: "ansa hypoglossi" RELATED OMO:0003011 [Wikipedia:Ansa_cervicalis] xref: BAMS:ancer xref: EHDAA2:0000124 xref: EHDAA:6669 xref: FMA:55142 xref: SCTID:362474000 xref: Wikipedia:Ansa_cervicalis is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0003725 ! cervical nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png" xsd:anyURI [Term] id: UBERON:0005437 name: conus medullaris namespace: uberon def: "The conus medullaris is the terminal end of the spinal cord. It occurs near lumbar vertebral levels 1 (L1) and 2 (L2). After the spinal cord tapers out, the spinal nerves continue as dangling nerve roots called cauda equina. This terminal nerve root tail is referred to as the filum terminale. The upper end of the conus medullaris is usually not well defined." [Wikipedia:Conus_medullaris] synonym: "medullary cone" EXACT [] synonym: "termination of the spinal cord" RELATED [] xref: EHDAA2:0000315 xref: EHDAA:6684 xref: EMAPA:18219 xref: FMA:74897 xref: NCIT:C12832 xref: neuronames:1627 xref: SCTID:315472009 xref: UMLS:C0149601 {source="ncithesaurus:Conus_Medullaris"} xref: VHOG:0000546 xref: Wikipedia:Conus_medullaris is_a: UBERON:0005844 ! spinal cord segment property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray662.png" xsd:anyURI property_value: UBPROP:0000001 "The conical end of the spinal cord, which continues with the filum terminale. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000546", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005443 name: filum terminale namespace: uberon def: "A strand of fibrous tissue in the spinal cord consisting of the filum terminale internum and the filum terminale externum." [Wikipedia:Filum_terminale] synonym: "coccygeal ligament" RELATED [] synonym: "filum terminale segment of pia mater" EXACT [FMA:83977] synonym: "pars pialis fili terminalis" EXACT OMO:0003011 [FMA:83977, FMA:TA] synonym: "terminal filum" EXACT [FMA:83977] xref: EHDAA2:0000510 xref: EHDAA:6686 xref: EMAPA:18220 xref: FMA:83977 xref: neuronames:1629 xref: SCTID:361344005 xref: VHOG:0000547 xref: Wikipedia:Filum_terminale relationship: part_of UBERON:0002240 ! spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray662.png" xsd:anyURI property_value: IAO:0000116 "definition to be verified, wikipedia def conflicts with VHOG?" xsd:string property_value: UBPROP:0000001 "The slender, thread-like continuation of the spinal cord below the origin of the lumbar nerves. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000547", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005453 name: inferior mesenteric ganglion namespace: uberon def: "A ganglion located near where the inferior mesenteric artery branches from the abdominal aorta[WP]." [Wikipedia:Inferior_mesenteric_ganglion] subset: human_reference_atlas synonym: "ganglion mesentericum inferius" RELATED OMO:0003011 [Wikipedia:Inferior_mesenteric_ganglion] xref: BAMS:GIM xref: EHDAA2:0000818 xref: EHDAA:8948 xref: FMA:77590 xref: MA:0003103 xref: SCTID:279277007 xref: Wikipedia:Inferior_mesenteric_ganglion is_a: UBERON:0035769 ! mesenteric ganglion relationship: part_of UBERON:0035770 ! inferior mesenteric nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005465 name: obturator nerve namespace: uberon def: "The obturator nerve arises from the ventral divisions of the second, third, and fourth lumbar nerves; the branch from the third is the largest, while that from the second is often very small." [Wikipedia:Obturator_nerve] synonym: "nervus obturatorius" RELATED OMO:0003011 [Wikipedia:Obturator_nerve] xref: EHDAA2:0001282 xref: EHDAA:5657 xref: FMA:16487 xref: MESH:D009776 xref: NCIT:C75909 xref: SCTID:181052006 xref: UMLS:C0028783 {source="ncithesaurus:Obturator_Nerve"} xref: Wikipedia:Obturator_nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray344.png" xsd:anyURI [Term] id: UBERON:0005475 name: sigmoid sinus namespace: uberon def: "A portion of the lateral venous sinus, bulging prominently into the mastoid cavity, that serves as a principal conduit by which blood leaves the cranium[EPIC]. The sigmoid is drained by the internal jugular vein." [http://palaeos.com/vertebrates/glossary/glossaryS.html, Wikipedia:Sigmoid_sinus] subset: human_reference_atlas synonym: "sulcus sigmoideus" RELATED OMO:0003011 [Wikipedia:Sigmoid_sinus] xref: EHDAA2:0001838 xref: EHDAA:9880 xref: EMAPA:19060 xref: FMA:50782 xref: ncithesaurus:Sigmoid_Sinus xref: SCTID:279264003 xref: VHOG:0001337 xref: Wikipedia:Sigmoid_sinus is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "The sigmoid sinuses, within a human head, are 2 areas beneath the brain, which allow blood veins to span the area, from the center of the head downward. They drain from the transverse sinuses (under the back of the brain) to the internal jugular vein. Each sigmoid sinus begins beneath the temporal bone and follows a tortuous course to the jugular foramen, at which point the sinus becomes continuous with the internal jugular vein[Wikipedia:Sigmoid_sinus]." xsd:string {source="Wikipedia:Sigmoid_sinus"} [Term] id: UBERON:0005476 name: spinal nerve trunk namespace: uberon def: "Trunk part of spinal nerve, where dorsal and ventral roots meet to form the spinal nerve, before branching off to dorsal and ventral rami." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "spinal nerve (trunk)" EXACT [FMA:5929] synonym: "spinal neural trunk" EXACT [FMA:5929] synonym: "trunk of spinal nerve" EXACT [FMA:5929] xref: EHDAA2:0001900 xref: FMA:5929 is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0001780 ! spinal nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005479 name: superior mesenteric ganglion namespace: uberon def: "A ganglion in the upper part of the superior mesenteric plexus that is the synapsing point for one of the pre- and post-synaptic nerves of the sympathetic division of the autonomous nervous system." [Wikipedia:Superior_mesenteric_ganglion] subset: human_reference_atlas synonym: "ganglion mesentericum superius" RELATED OMO:0003011 [Wikipedia:Superior_mesenteric_ganglion] synonym: "superior mesenteric ganglia" RELATED [Wikipedia:Superior_mesenteric_ganglion] xref: BAMS:GSM xref: EHDAA2:0001950 xref: EHDAA:8950 xref: FMA:77589 xref: MA:0003102 xref: SCTID:279276003 xref: Wikipedia:Superior_mesenteric_ganglion is_a: UBERON:0035769 ! mesenteric ganglion relationship: part_of UBERON:0005488 ! superior mesenteric plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005481 name: tentorial sinus namespace: uberon def: "An unpaired venous dural sinus that receives blood from the superior cerebellar veins and inferior sagittal sinus and drains into the confluence of sinuses." [Wikipedia:Straight_sinus] subset: human_reference_atlas synonym: "rectus sinus" RELATED [Wikipedia:Straight_sinus] synonym: "sinus rectus" RELATED OMO:0003011 [Wikipedia:Straight_sinus] synonym: "straight sinus" RELATED [Wikipedia:Straight_sinus] synonym: "straight sinus vein" RELATED [Wikipedia:Straight_sinus] xref: EHDAA2:0002003 xref: EHDAA:9882 xref: FMA:50769 xref: ncithesaurus:Straight_Sinus xref: neuronames:3188 xref: SCTID:279261006 xref: Wikipedia:Straight_sinus is_a: UBERON:0017640 {source="FMA"} ! unpaired venous dural sinus property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "retired in NCIT" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0005486 name: venous dural sinus namespace: uberon def: "A venous channel found between layers of dura mater in the brain. Receives blood from internal and external veins of the brain, receive cerebrospinal fluid (CSF) from the subarachnoid space, and ultimately empty into the internal jugular vein." [Wikipedia:Dural_venous_sinuses] synonym: "cranial dural venous sinus" EXACT [FMA:50762] synonym: "dural sinus" EXACT [FMA:50762] synonym: "dural vein" EXACT [MA:0002113] synonym: "dural venous sinus" EXACT [FMA:50762] synonym: "s. durae matris" RELATED OMO:0003011 [Wikipedia:Dural_venous_sinuses] synonym: "venous dural" EXACT [EHDAA:6491] synonym: "venous dural sinus" EXACT [EHDAA2:0002169] xref: EHDAA2:0002169 xref: EHDAA:6491 xref: EMAPA:18634 xref: FMA:50762 xref: MA:0002113 xref: NCIT:C102627 xref: SCTID:54944003 xref: VHOG:0001004 xref: Wikipedia:Dural_venous_sinuses relationship: part_of UBERON:0010743 ! meningeal cluster property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI property_value: IAO:0000116 "the MA placement should be checked" xsd:string [Term] id: UBERON:0005488 name: superior mesenteric plexus namespace: uberon def: "The superior mesenteric plexus is a continuation of the lower part of the celiac plexus, receiving a branch from the junction of the right vagus nerve with the plexus. It surrounds the superior mesenteric artery, accompanies it into the mesentery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , pancreatic branches to the pancreas; intestinal branches to the small intestine; and ileocolic, right colic, and middle colic branches, which supply the corresponding parts of the great intestine. The nerves composing this plexus are white in color and firm in texture; in the upper part of the plexus close to the origin of the superior mesenteric artery is the superior mesenteric ganglion." [Wikipedia:Superior_mesenteric_plexus] subset: human_reference_atlas synonym: "plexus mesentericus superior" EXACT OMO:0003011 [Wikipedia:Superior_mesenteric_plexus] synonym: "superior mesenteric nerve plexus" EXACT [FMA:6639] xref: FMA:6639 xref: SCTID:362493003 xref: Wikipedia:Superior_mesenteric_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0035771 ! mesenteric plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005495 name: midbrain lateral wall namespace: uberon synonym: "lateral wall mesencephalon" RELATED [VHOG:0000455] synonym: "lateral wall midbrain" EXACT [ZFA:0000906] synonym: "lateral wall midbrain region" EXACT [ZFA:0000906] xref: EHDAA2:0001171 xref: EHDAA:3700 xref: EMAPA:16976 xref: TAO:0000906 xref: VHOG:0000455 xref: ZFA:0000906 relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0005499 name: rhombomere 1 namespace: uberon def: "Hindbrain segment or neuromere 1." [ZFA:0001031] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r1" EXACT OMO:0003000 [ZFA:0001031] xref: DHBA:12667 xref: DMBA:16915 xref: EFO:0003608 xref: EHDAA2:0001637 xref: EMAPA:16290 xref: FMA:295790 xref: TAO:0001031 xref: ZFA:0001031 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001031", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "1" xsd:nonNegativeInteger [Term] id: UBERON:0005500 name: rhombomere floor plate namespace: uberon synonym: "floor plate hindbrain" EXACT [VHOG:0001019] synonym: "floor plate hindbrain region" RELATED [ZFA:0001258] synonym: "floor plate rhombencephalon" RELATED [VHOG:0001019] synonym: "floor plate rhombomere region" EXACT [ZFA:0001258] synonym: "floorplate hindbrain" RELATED [VHOG:0001019] synonym: "rhombencephalon floor plate" EXACT [EHDAA2:0004324] xref: EHDAA2:0004324 xref: EMAPA:32818 xref: TAO:0001258 xref: VHOG:0001019 xref: ZFA:0001258 relationship: part_of UBERON:0001892 ! rhombomere property_value: UBPROP:0000003 "In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001019", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005501 name: rhombomere lateral wall namespace: uberon def: "A neural tube lateral wall that is part of a rhombomere." [OBOL:automatic] synonym: "future hindbrain lateral wall" RELATED [EMAPA:35364] xref: EMAPA:32819 xref: EMAPA:35364 relationship: part_of UBERON:0001892 ! rhombomere [Term] id: UBERON:0005502 name: rhombomere roof plate namespace: uberon synonym: "future hindbrain roof plate" RELATED [EMAPA:35367] synonym: "roof plate hindbrain" RELATED [ZFA:0001311] synonym: "roof plate rhombomere" EXACT [TAO:0001311] synonym: "roof plate rhombomere region" EXACT [ZFA:0001311] synonym: "roof plate rhombomeres" EXACT [VHOG:0001018] xref: EMAPA:32824 xref: EMAPA:35367 xref: TAO:0001311 xref: VHOG:0001018 xref: ZFA:0001311 relationship: part_of UBERON:0001892 ! rhombomere [Term] id: UBERON:0005507 name: rhombomere 3 namespace: uberon def: "The third transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order." [MGI:anna, MGI:csmith, MP:0012792, UBERON:0005507] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r3" EXACT OMO:0003000 [ZFA:0000948] xref: DHBA:12669 xref: DMBA:17093 xref: EFO:0003596 xref: EHDAA2:0001657 xref: EMAPA:16297 xref: FMA:295794 xref: TAO:0000948 xref: XAO:0004081 xref: ZFA:0000948 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000948", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "3" xsd:nonNegativeInteger [Term] id: UBERON:0005511 name: rhombomere 4 namespace: uberon def: "The fourth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order." [MGI:anna, MGI:csmith, MP:0012796, UBERON:0005511] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r4" EXACT OMO:0003000 [ZFA:0001032] xref: DHBA:12671 xref: DMBA:17156 xref: EFO:0003609 xref: EHDAA2:0001667 xref: EMAPA:16301 xref: FMA:295796 xref: TAO:0001032 xref: XAO:0004082 xref: ZFA:0001032 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001032", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "4" xsd:nonNegativeInteger [Term] id: UBERON:0005515 name: rhombomere 5 namespace: uberon def: "The fifth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order." [MGI:anna, MGI:csmith, MP:0012800, UBERON:0005515] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r5" EXACT OMO:0003000 [ZFA:0000823] xref: DHBA:12673 xref: DMBA:17221 xref: EFO:0003580 xref: EHDAA2:0001677 xref: EMAPA:16305 xref: FMA:295834 xref: TAO:0000823 xref: XAO:0004083 xref: ZFA:0000823 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000823", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "5" xsd:nonNegativeInteger [Term] id: UBERON:0005519 name: rhombomere 6 namespace: uberon def: "The sixth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order." [MGI:anna, MGI:csmith, MP:0012804, UBERON:0005519] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r6" EXACT OMO:0003000 [ZFA:0000069] xref: DHBA:12674 xref: DMBA:17290 xref: EFO:0003480 xref: EHDAA2:0001687 xref: EMAPA:16500 xref: FMA:295836 xref: TAO:0000069 xref: XAO:0004084 xref: ZFA:0000069 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000069", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "6" xsd:nonNegativeInteger [Term] id: UBERON:0005523 name: rhombomere 7 namespace: uberon def: "The seventh transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order." [MGI:anna, MGI:csmith, MP:0012808, UBERON:0005523] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r7" EXACT OMO:0003000 [ZFA:0000949] xref: DHBA:12675 xref: DMBA:17353 xref: EFO:0003597 xref: EHDAA2:0001697 xref: EMAPA:16504 xref: FMA:295838 xref: TAO:0000949 xref: ZFA:0000949 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000949", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "7" xsd:nonNegativeInteger [Term] id: UBERON:0005527 name: rhombomere 8 namespace: uberon def: "The eighth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order." [MGI:anna, MGI:csmith, MP:0012812, UBERON:0005527] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r8" EXACT OMO:0003000 [ZFA:0000153] xref: DHBA:12677 xref: DMBA:17416 xref: EFO:0003500 xref: EHDAA2:0001707 xref: EMAPA:16508 xref: TAO:0000153 xref: ZFA:0000153 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000153", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "8" xsd:nonNegativeInteger [Term] id: UBERON:0005561 name: telencephalon lateral wall namespace: uberon subset: vertebrate_core synonym: "lateral wall telencephalic region" EXACT [ZFA:0000785] synonym: "lateral wall telencephalon" EXACT [ZFA:0000785] xref: EHDAA2:0001985 xref: EHDAA:3504 xref: EMAPA:16656 xref: TAO:0000785 xref: VHOG:0000023 xref: ZFA:0000785 relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000001 "Lateral wall that is part of the telencephalon. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000023", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005566 name: rhombomere 1 floor plate namespace: uberon subset: efo_slim subset: vertebrate_core synonym: "floor plate r1" EXACT [ZFA:0000882] synonym: "floor plate rhombomere 1" EXACT [ZFA:0000882] xref: DMBA:17022 xref: EFO:0003584 xref: EHDAA2:0001640 xref: EMAPA:16291 xref: TAO:0000882 xref: ZFA:0000882 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005499 ! rhombomere 1 [Term] id: UBERON:0005567 name: rhombomere 1 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 1." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 1" EXACT [ZFA:0000781] xref: EHDAA2:0001641 xref: EMAPA:16482 xref: TAO:0000781 xref: ZFA:0000781 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005499 ! rhombomere 1 [Term] id: UBERON:0005568 name: rhombomere 1 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 1." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 1" EXACT [ZFA:0001033] xref: DMBA:16916 xref: EHDAA2:0001645 xref: EMAPA:16483 xref: TAO:0001033 xref: ZFA:0001033 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005499 ! rhombomere 1 [Term] id: UBERON:0005569 name: rhombomere 2 namespace: uberon def: "The second transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order." [MGI:anna, MGI:csmith, MP:0012788, UBERON:0005569] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "r2" EXACT OMO:0003000 [ZFA:0000822] xref: DHBA:12668 xref: DMBA:17023 xref: EFO:0003579 xref: EHDAA2:0001647 xref: EMAPA:16293 xref: FMA:295792 xref: TAO:0000822 xref: XAO:0004080 xref: ZFA:0000822 is_a: UBERON:0001892 ! rhombomere property_value: UBPROP:0000001 "Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000822", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000111 "3" xsd:nonNegativeInteger [Term] id: UBERON:0005570 name: rhombomere 2 floor plate namespace: uberon def: "A rhombomere floor plate that is part of a rhombomere 2." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate r2" EXACT [ZFA:0000763] synonym: "floor plate rhombomere 2" EXACT [ZFA:0000763] synonym: "floorplate r2" EXACT [ZFA:0000763] xref: DMBA:17091 xref: EFO:0003568 xref: EHDAA2:0001650 xref: EMAPA:16294 xref: TAO:0000763 xref: ZFA:0000763 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: UBERON:0005571 name: rhombomere 2 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 2." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 2" EXACT [ZFA:0000907] xref: EHDAA2:0001651 xref: EMAPA:16486 xref: TAO:0000907 xref: ZFA:0000907 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: UBERON:0005572 name: rhombomere 2 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 2." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 2" EXACT [ZFA:0000824] xref: DMBA:17024 xref: EHDAA2:0001655 xref: EMAPA:16487 xref: TAO:0000824 xref: ZFA:0000824 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: UBERON:0005573 name: rhombomere 3 floor plate namespace: uberon def: "A rhombomere floor plate that is part of a rhombomere 3." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate r3" EXACT [ZFA:0000888] synonym: "floor plate rhombomere 3" EXACT [ZFA:0000888] synonym: "floorplate r3" EXACT [ZFA:0000888] xref: DMBA:17155 xref: EFO:0003586 xref: EHDAA2:0001660 xref: EMAPA:16298 xref: TAO:0000888 xref: ZFA:0000888 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005507 ! rhombomere 3 [Term] id: UBERON:0005574 name: rhombomere 3 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 3." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 3" EXACT [ZFA:0000994] xref: EHDAA2:0001661 xref: EMAPA:16490 xref: TAO:0000994 xref: ZFA:0000994 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005507 ! rhombomere 3 [Term] id: UBERON:0005575 name: rhombomere 3 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 3." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 3" EXACT [ZFA:0000950] xref: DMBA:17094 xref: EHDAA2:0001665 xref: EMAPA:16491 xref: TAO:0000950 xref: ZFA:0000950 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005507 ! rhombomere 3 [Term] id: UBERON:0005576 name: rhombomere 4 floor plate namespace: uberon def: "A rhombomere floor plate that is part of a rhombomere 4." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate r4" EXACT [ZFA:0000893] synonym: "floor plate rhombomere 4" EXACT [ZFA:0000893] synonym: "floorplate r4" EXACT [ZFA:0000893] xref: DMBA:17219 xref: EFO:0003588 xref: EHDAA2:0001670 xref: EMAPA:16302 xref: TAO:0000893 xref: ZFA:0000893 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005511 ! rhombomere 4 [Term] id: UBERON:0005577 name: rhombomere 4 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 4." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 4" EXACT [ZFA:0000782] xref: EHDAA2:0001671 xref: EMAPA:16494 xref: TAO:0000782 xref: ZFA:0000782 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005511 ! rhombomere 4 [Term] id: UBERON:0005578 name: rhombomere 4 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 4." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 4" EXACT [ZFA:0001034] xref: DMBA:17157 xref: EHDAA2:0001675 xref: EMAPA:16495 xref: TAO:0001034 xref: ZFA:0001034 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005511 ! rhombomere 4 [Term] id: UBERON:0005579 name: rhombomere 5 floor plate namespace: uberon def: "A rhombomere floor plate that is part of a rhombomere 5." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate r5" EXACT [ZFA:0000764] synonym: "floor plate rhombomere 5" EXACT [ZFA:0000764] synonym: "floorplate r5" EXACT [ZFA:0000764] xref: DMBA:17289 xref: EFO:0003569 xref: EHDAA2:0001680 xref: EMAPA:16306 xref: TAO:0000764 xref: ZFA:0000764 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: UBERON:0005580 name: rhombomere 5 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 5." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 5" EXACT [ZFA:0000908] xref: EHDAA2:0001681 xref: EMAPA:16498 xref: TAO:0000908 xref: ZFA:0000908 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: UBERON:0005581 name: rhombomere 5 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 5." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 5" EXACT [ZFA:0000828] xref: DMBA:17222 xref: EHDAA2:0001685 xref: EMAPA:16499 xref: TAO:0000828 xref: ZFA:0000828 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: UBERON:0005582 name: rhombomere 6 floor plate namespace: uberon def: "A rhombomere floor plate that is part of a rhombomere 6." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate r6" EXACT [ZFA:0000889] synonym: "floor plate rhombomere 6" EXACT [ZFA:0000889] synonym: "floorplate r6" EXACT [ZFA:0000889] xref: DMBA:17351 xref: EFO:0003587 xref: EHDAA2:0001690 xref: EMAPA:16501 xref: TAO:0000889 xref: ZFA:0000889 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005519 ! rhombomere 6 [Term] id: UBERON:0005583 name: rhombomere 6 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 6." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 6" EXACT [ZFA:0000995] xref: EHDAA2:0001691 xref: EMAPA:16502 xref: TAO:0000995 xref: ZFA:0000995 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005519 ! rhombomere 6 [Term] id: UBERON:0005584 name: rhombomere 6 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 6." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 6" EXACT [ZFA:0000825] xref: DMBA:17291 xref: EHDAA2:0001695 xref: EMAPA:16503 xref: TAO:0000825 xref: ZFA:0000825 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005519 ! rhombomere 6 [Term] id: UBERON:0005585 name: rhombomere 7 floor plate namespace: uberon def: "A rhombomere floor plate that is part of a rhombomere 7." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate r7" EXACT [ZFA:0000904] synonym: "floor plate rhombomere 7" EXACT [ZFA:0000904] synonym: "floorplate r7" EXACT [ZFA:0000904] xref: DMBA:17415 xref: EFO:0003589 xref: EHDAA2:0001700 xref: EMAPA:16505 xref: TAO:0000904 xref: ZFA:0000904 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005523 ! rhombomere 7 [Term] id: UBERON:0005586 name: rhombomere 7 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 7." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 7" EXACT [ZFA:0000783] xref: EHDAA2:0001701 xref: EMAPA:16506 xref: TAO:0000783 xref: ZFA:0000783 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005523 ! rhombomere 7 [Term] id: UBERON:0005587 name: rhombomere 7 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 7." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 7" EXACT [ZFA:0000951] xref: DMBA:17354 xref: EHDAA2:0001705 xref: EMAPA:16507 xref: TAO:0000951 xref: ZFA:0000951 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005523 ! rhombomere 7 [Term] id: UBERON:0005588 name: rhombomere 8 floor plate namespace: uberon def: "A rhombomere floor plate that is part of a rhombomere 8." [OBOL:automatic] subset: efo_slim subset: vertebrate_core synonym: "floor plate r8" EXACT [ZFA:0000765] synonym: "floor plate rhombomere 8" EXACT [ZFA:0000765] synonym: "floorplate r8" EXACT [ZFA:0000765] xref: DMBA:17475 xref: EFO:0003570 xref: EHDAA2:0001709 xref: EMAPA:16509 xref: TAO:0000765 xref: ZFA:0000765 is_a: UBERON:0005500 ! rhombomere floor plate relationship: part_of UBERON:0005527 ! rhombomere 8 [Term] id: UBERON:0005589 name: rhombomere 8 lateral wall namespace: uberon def: "A rhombomere lateral wall that is part of a rhombomere 8." [OBOL:automatic] subset: vertebrate_core synonym: "lateral wall rhombomere 8" EXACT [ZFA:0000909] xref: EHDAA2:0001710 xref: EMAPA:16510 xref: TAO:0000909 xref: ZFA:0000909 is_a: UBERON:0005501 ! rhombomere lateral wall relationship: part_of UBERON:0005527 ! rhombomere 8 [Term] id: UBERON:0005590 name: rhombomere 8 roof plate namespace: uberon def: "A rhombomere roof plate that is part of a rhombomere 8." [OBOL:automatic] subset: vertebrate_core synonym: "roof plate rhombomere 8" EXACT [ZFA:0001035] xref: DMBA:17417 xref: EHDAA2:0001714 xref: EMAPA:16511 xref: TAO:0001035 xref: ZFA:0001035 is_a: UBERON:0005502 ! rhombomere roof plate relationship: part_of UBERON:0005527 ! rhombomere 8 [Term] id: UBERON:0005591 name: diencephalon lateral wall namespace: uberon synonym: "lateral wall diencephalic region" EXACT [ZFA:0000780] synonym: "lateral wall diencephalon" EXACT [ZFA:0000780] xref: EHDAA2:0000396 xref: EHDAA:1977 xref: EMAPA:16905 xref: TAO:0000780 xref: VHOG:0000596 xref: ZFA:0000780 relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0005657 name: crus commune epithelium namespace: uberon def: "An epithelium that is part of a crus commune." [OBOL:automatic] xref: EMAPA:17820 xref: RETIRED_EHDAA2:0000332 xref: VHOG:0000478 is_a: UBERON:0006932 ! vestibular epithelium [Term] id: UBERON:0005720 name: hindbrain venous system namespace: uberon def: "A venous system that is part of a hindbrain." [OBOL:automatic] synonym: "rhombencephalon venous system" RELATED [VHOG:0001322] xref: EHDAA2:0000776 xref: EMAPA:18632 xref: VHOG:0001322 relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0005723 name: floor plate spinal cord region namespace: uberon alt_id: UBERON:0005247 def: "A multi-tissue structure that is part of a spinal cord and is part of a floor plate." [OBOL:automatic] subset: vertebrate_core synonym: "floor plate spinal cord" EXACT [VHOG:0000787] synonym: "floorplate spinal cord" EXACT [ZFA:0000890] synonym: "spinal cord floor" RELATED [VHOG:0000787] xref: EMAPA:17578 xref: TAO:0000890 xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002240 ! spinal cord property_value: UBPROP:0000003 "In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000787", ontology="VHOG", source="DOI:10.1016/S0959-4388(99)00003-3 Holland LZ and Holland ND, Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology (1999)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005724 name: roof plate spinal cord region namespace: uberon alt_id: UBERON:0005246 def: "A tissue that is part of a spinal cord and is part of a roof plate." [OBOL:automatic] synonym: "roof plate spinal cord" EXACT [VHOG:0000777] synonym: "roofplate spinal cord" RELATED [VHOG:0000777] synonym: "spinal cord roof" RELATED [VHOG:0000777] xref: EMAPA:17586 xref: TAO:0001177 xref: VHOG:0000777 xref: XAO:0000022 xref: ZFA:0001177 relationship: part_of UBERON:0002240 ! spinal cord property_value: UBPROP:0000001 "Roof plate that is part of the spinal cord. [Bgee_curator][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000777", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005807 name: rostral ventrolateral medulla namespace: uberon def: "Control of blood pressure is crucially dependent on the integrity of a small region of the brainstem called the ventrolateral medulla. Within this part of the brain are the cells that control the heart, blood vessels, swallowing, breathing and many other functions of the body that are not noticed at a conscious level; such unconscious activities are known as 'Autonomic'. One of these regions is the Rostral Ventrolateral Medulla (RVLM) is also known as the pressor area of the medulla (medulla pressor). It receives inhibitory GABAergic input from the caudal ventrolateral medulla (CVLM). The RVLM is the primary regulator of the sympathetic nervous system, sending excitatory fibers (catecholaminergic) to the sympathetic preganglionic neurons in the spinal cord, via reticulospinal tract[WP]." [Wikipedia:Rostral_ventrolateral_medulla] synonym: "medulla pressor" EXACT [Wikipedia:Rostral_ventrolateral_medulla] synonym: "RVLM" EXACT OMO:0003000 [] xref: BTO:0002778 xref: Wikipedia:Rostral_ventrolateral_medulla is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0005821 name: gracile fasciculus namespace: uberon alt_id: UBERON:0004168 def: "A group of axons that are from neurons involved in proprioception from the lower trunk and lower limb[GO]. The fasciculus gracilis (tract of Goll) is a bundle of axon fibres in the dorsomedial spinal cord that carries information about fine touch, vibrations, and conscious proprioception from the lower part of the body to the brain stem. It is part of the posterior column of the spinal cord, which also contains the fasciculus cuneatus, which carries the same information from the upper part of the body. This tract and its continuation in the brain stem is often referred to as the posterior column-medial lemniscus pathway. The fasciculus gracilis is wedge-shaped on transverse section and lies next the posterior median septum, its base being at the surface of the medulla spinalis, and its apex directed toward the posterior gray commissure. It increases in size from below upward, and consists of long thin fibers that are derived from the posterior nerve roots, and ascend as far as the medulla oblongata, where they end in the nucleus gracilis. The tract of Goll was named after Swiss neuroanatomist Friedrich Goll[WP]." [GO:0021958, https://github.com/obophenotype/uberon/issues/1277, Wikipedia:Gracile_fasciculus] synonym: "f. gracilis medullae spinalis" RELATED OMO:0003011 [Wikipedia:Gracile_fasciculus] synonym: "fasciculus gracilis" EXACT [FMA:258416] synonym: "gracile column" RELATED [Wikipedia:Gracile_fasciculus] synonym: "gracile fascicle" EXACT [FMA:258416] synonym: "gracile tract" RELATED [Wikipedia:Gracile_fasciculus] synonym: "gracilis tract" EXACT [GO:0021958] synonym: "tract of Goll" RELATED [GO:0021958] xref: BAMS:gr xref: BAMS:grf xref: BM:Me-GF xref: DHBA:12739 xref: FMA:258416 xref: HBA:265505586 xref: MBA:388 xref: NCIT:C33799 xref: neuronames:2440 xref: SCTID:369079001 xref: UMLS:C0228522 {source="ncithesaurus:Tract_of_Goll"} xref: Wikipedia:Gracile_fasciculus is_a: UBERON:0001019 {source="https://github.com/obophenotype/uberon/issues/1277"} ! nerve fasciculus is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002316 ! white matter relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: IAO:0000116 "distinction between axon tract and fasicle is unclear" xsd:string [Term] id: UBERON:0005826 name: gracile fasciculus of spinal cord namespace: uberon def: "A gracile fasciculus that is part of a spinal cord." [OBOL:automatic] synonym: "fasciculus gracilis (medulla spinalis)" EXACT OMO:0003011 [FMA:73938, FMA:TA] synonym: "gracile fascicle of spinal cord" EXACT [FMA:73938] synonym: "spinal cord segment of fasciculus gracilis" EXACT [FMA:73938] synonym: "spinal cord segment of gracile fasciculus" EXACT [FMA:73938] xref: FMA:73938 xref: neuronames:1664 is_a: UBERON:0005821 ! gracile fasciculus is_a: UBERON:0005837 ! fasciculus of spinal cord relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002318 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! white matter of spinal cord relationship: part_of UBERON:0005373 ! spinal cord dorsal column [Term] id: UBERON:0005832 name: cuneate fasciculus namespace: uberon alt_id: UBERON:0004169 def: "An axon tract in the spinal cord and medulla which primarily transmits information from the forelimb and trunk. It is part of the dorsal column-medial lemniscus pathway." [GO:0021959, http://orcid.org/0000-0002-6601-2165, Wikipedia:Cuneate_fasciculus] synonym: "cuneate column" RELATED [Wikipedia:Cuneate_fasciculus] synonym: "cuneate fascicle" RELATED [BAMS:cuf] synonym: "cuneate tract" RELATED [Wikipedia:Cuneate_fasciculus] synonym: "cuneatus tract" EXACT [GO:0021959] synonym: "fasciculus cuneatus" RELATED [Wikipedia:Cuneate_fasciculus] synonym: "fasciculus cuneus" RELATED [Wikipedia:Cuneate_fasciculus] xref: BAMS:cu xref: BAMS:cuf xref: BM:Me-CF xref: DHBA:12731 xref: HBA:265505550 xref: MBA:380 xref: neuronames:2439 is_a: UBERON:0001018 ! axon tract is_a: UBERON:0001019 {source="FMA-abduced"} ! nerve fasciculus relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway property_value: UBPROP:0000013 "we assign the synonym 'Burdachs tract' to the subclass. sometimes the term 'cuneate fasciculus' refers specifically to cuneate fasiculus of spinal cord. We use the term more broadly here." xsd:string [Term] id: UBERON:0005835 name: cuneate fasciculus of spinal cord namespace: uberon def: "An axon tract in the spinal cord which primarily transmits information from the forelimb and trunk. It is part of the posterior column-medial lemniscus pathway." [GO:0021959, http://orcid.org/0000-0002-6601-2165, Wikipedia:Cuneate_fasciculus] synonym: "burdach's tract" EXACT [FMA:73941] synonym: "cuneate fascicle of spinal cord" EXACT [FMA:73941] synonym: "cuneate fasciculus" BROAD [FMA:73941] synonym: "fasciculus cuneatus" EXACT OMO:0003011 [FMA:73941, FMA:TA] synonym: "fasciculus cuneatus medullae spinalis" RELATED OMO:0003011 [Wikipedia:Cuneate_fasciculus] synonym: "tract of Burdach" EXACT [GO:0021959] xref: FMA:73941 xref: NCIT:C33798 xref: neuronames:1659 xref: SCTID:314792006 xref: UMLS:C0228578 {source="ncithesaurus:Tract_of_Burdach"} xref: Wikipedia:Cuneate_fasciculus is_a: UBERON:0005832 ! cuneate fasciculus is_a: UBERON:0005837 ! fasciculus of spinal cord is_a: UBERON:0007699 ! tract of spinal cord relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0005373 ! spinal cord dorsal column property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: IAO:0000116 "check ontology structure, isa parentage to fasciculus of spinal cord should be inferred. TODO - change definition to be the *whole* of the CF in the SC" xsd:string [Term] id: UBERON:0005837 name: fasciculus of spinal cord namespace: uberon def: "A fascicle that is part of a spinal cord." [OBOL:automatic] synonym: "spinal cord fasciculus" EXACT [FMA:75799] xref: FMA:75799 is_a: UBERON:0001019 ! nerve fasciculus is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0005838 name: fasciculus of brain namespace: uberon def: "A fascicle that is part of a brain." [OBOL:automatic] synonym: "brain fasciculus" EXACT [FMA:83844] xref: FMA:83844 is_a: UBERON:0001019 ! nerve fasciculus is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0005839 name: thoracic spinal cord dorsal column namespace: uberon def: "A subdivision of spinal cord dorsal column that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "dorsal funiculus of thoracic segment of spinal cord" EXACT [FMA:258178] synonym: "dorsal white column of thoracic segment of spinal cord" EXACT [FMA:258178] synonym: "thoracic segment of dorsal funiculus of spinal cord" EXACT [FMA:258178] synonym: "thoracic spinal cord posterior column" EXACT [BIRNLEX:1442] xref: BIRNLEX:1442 xref: FMA:258178 xref: UMLS:C0228634 {source="BIRNLEX:1442"} is_a: UBERON:0006079 ! subdivision of spinal cord dorsal column relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005840 name: sacral spinal cord dorsal column namespace: uberon def: "A subdivision of spinal cord dorsal column that is part of a sacral spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "sacral spinal cord posterior column" EXACT [BIRNLEX:1514] synonym: "sacral subsegment of dorsal funiculus of spinal cord" EXACT [FMA:258198] xref: BIRNLEX:1514 xref: FMA:258198 is_a: UBERON:0006079 ! subdivision of spinal cord dorsal column relationship: part_of UBERON:0005843 ! sacral spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005841 name: cervical spinal cord dorsal column namespace: uberon def: "A subdivision of spinal cord dorsal column that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical segment of dorsal funiculus of spinal cord" EXACT [FMA:258176] synonym: "cervical spinal cord posterior column" EXACT [BIRNLEX:736] synonym: "dorsal funiculus of cervical segment of spinal cord" EXACT [FMA:258176] synonym: "dorsal white column of cervical segment of spinal cord" EXACT [FMA:258176] xref: BIRNLEX:736 xref: FMA:258176 xref: UMLS:C0228617 {source="BIRNLEX:736"} is_a: UBERON:0006079 ! subdivision of spinal cord dorsal column relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005842 name: lumbar spinal cord dorsal column namespace: uberon def: "A subdivision of spinal cord dorsal column that is part of a lumbar spinal cord." [OBOL:automatic] synonym: "dorsal funiculus of lumbar segment of spinal cord" EXACT [FMA:258180] synonym: "dorsal white column of lumbar segment of spinal cord" EXACT [FMA:258180] synonym: "lumbar segment of dorsal funiculus of spinal cord" EXACT [FMA:258180] synonym: "lumbar segment of gracile fasciculus of spinal cord" EXACT [FMA:258180] synonym: "lumbar spinal cord posterior column" EXACT [BIRNLEX:834] xref: BIRNLEX:834 xref: FMA:258180 is_a: UBERON:0006079 ! subdivision of spinal cord dorsal column relationship: part_of UBERON:0002792 ! lumbar spinal cord [Term] id: UBERON:0005843 name: sacral spinal cord namespace: uberon def: "A spinal cord segment that adjacent_to a sacral region." [OBOL:automatic] subset: human_reference_atlas synonym: "pars sacralis medullae spinalis" EXACT OMO:0003011 [FMA:256623, FMA:TA] synonym: "sacral segment of spinal cord" EXACT [FMA:256623] synonym: "sacral segments of spinal cord [1-5]" EXACT [FMA:256623] synonym: "segmenta sacralia medullae spinalis [1-5]" EXACT OMO:0003011 [FMA:256623, FMA:TA] xref: BIRNLEX:1275 xref: FMA:256623 xref: MA:0003085 xref: NCIT:C12896 xref: SCTID:244438003 xref: UMLS:C0581669 {source="BIRNLEX:1275", source="ncithesaurus:Sacral_Spinal_Cord"} xref: UMLS:C1280196 {source="BIRNLEX:1275"} is_a: UBERON:0005844 ! spinal cord segment property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005844 name: spinal cord segment namespace: uberon synonym: "axial part of spinal cord" EXACT [BIRNLEX:2665] synonym: "axial regional part of spinal cord" EXACT [BIRNLEX:2665] synonym: "segment of spinal cord" EXACT [FMA:62420] synonym: "spinal neuromeres" RELATED OMO:0003004 [TAO:0001332] xref: BIRNLEX:2665 xref: FMA:62420 xref: MA:0003080 xref: SCTID:278748001 is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002240 ! spinal cord property_value: IAO:0000116 "This is currently used loosely to refer to cervical, lumbar, etc as well as the metamerically repeated segments, which may correspond more closely with the ZFA neuromere term" xsd:string [Term] id: UBERON:0005845 name: caudal segment of spinal cord namespace: uberon def: "A spinal cord segment that adjacent_to a caudal region." [OBOL:automatic] comment: for spinal cord segments, we treat coccygeal/caudal as synonyms - we only differentiate where bone is concerned synonym: "coccygeal segment of spinal cord" EXACT [FMA:256635] synonym: "coccygeal segments of spinal cord [1-3]" EXACT [FMA:256635] synonym: "pars coccygea medullae spinalis" EXACT OMO:0003011 [FMA:256635, FMA:TA] synonym: "segmenta coccygea" RELATED OMO:0003011 [NeuroNames:1656] synonym: "segmenta coccygea medullae spinalis [1-3]" EXACT OMO:0003011 [FMA:256635, FMA:TA] xref: FMA:256635 xref: MA:0003084 xref: neuronames:1656 xref: SCTID:278753006 is_a: UBERON:0005844 ! spinal cord segment [Term] id: UBERON:0005847 name: thoracic spinal cord lateral column namespace: uberon def: "A subdivision of spinal cord lateral column that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas xref: BIRNLEX:1439 xref: UMLS:C0228635 {source="BIRNLEX:1439"} is_a: UBERON:0006078 ! subdivision of spinal cord lateral column relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005848 name: sacral spinal cord lateral column namespace: uberon def: "A subdivision of spinal cord lateral column that is part of a sacral spinal cord." [OBOL:automatic] subset: human_reference_atlas xref: BIRNLEX:1587 is_a: UBERON:0006078 ! subdivision of spinal cord lateral column relationship: part_of UBERON:0005843 ! sacral spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005849 name: cervical spinal cord lateral column namespace: uberon def: "A subdivision of spinal cord lateral column that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas xref: BIRNLEX:729 xref: UMLS:C0228618 {source="BIRNLEX:729"} is_a: UBERON:0006078 ! subdivision of spinal cord lateral column relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005850 name: lumbar spinal cord lateral column namespace: uberon def: "A subdivision of spinal cord lateral column that is part of a lumbar spinal cord." [OBOL:automatic] subset: human_reference_atlas xref: BIRNLEX:828 is_a: UBERON:0006078 ! subdivision of spinal cord lateral column relationship: part_of UBERON:0002792 ! lumbar spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005852 name: thoracic spinal cord ventral column namespace: uberon def: "A subdivision of spinal cord ventral column that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas xref: BIRNLEX:1448 xref: UMLS:C0228636 {source="BIRNLEX:1448"} xref: UMLS:C1288556 {source="BIRNLEX:1448"} is_a: UBERON:0016551 ! subdivision of spinal cord ventral column relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005853 name: sacral spinal cord ventral column namespace: uberon def: "A subdivision of spinal cord ventral column that is part of a sacral spinal cord." [OBOL:automatic] subset: human_reference_atlas xref: BIRNLEX:1520 is_a: UBERON:0016551 ! subdivision of spinal cord ventral column relationship: part_of UBERON:0005843 ! sacral spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005854 name: cervical spinal cord ventral column namespace: uberon def: "A subdivision of spinal cord ventral column that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord anterior column" EXACT [BIRNLEX:1660] xref: BIRNLEX:1660 xref: UMLS:C0228619 {source="BIRNLEX:1660"} xref: UMLS:C1278746 {source="BIRNLEX:1660"} is_a: UBERON:0016551 ! subdivision of spinal cord ventral column relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005855 name: lumbar spinal cord ventral column namespace: uberon def: "A subdivision of spinal cord ventral column that is part of a lumbar spinal cord." [OBOL:automatic] xref: BIRNLEX:840 is_a: UBERON:0016551 ! subdivision of spinal cord ventral column relationship: part_of UBERON:0002792 ! lumbar spinal cord [Term] id: UBERON:0005882 name: neural tube alar plate namespace: uberon def: "The mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009692, Wikipedia:Alar_plate] synonym: "alar lamina" RELATED [Wikipedia:Alar_lamina] synonym: "alar plate" EXACT [NeuroNames:1370] synonym: "alar plate of neural tube" EXACT [] synonym: "dorsal part of neural tube" RELATED [] synonym: "lamina alaris" RELATED OMO:0003011 [Wikipedia:Alar_plate] synonym: "lamina dorsolateralis" RELATED OMO:0003011 [Wikipedia:Alar_plate] synonym: "sensory part of neural tube" RELATED [] xref: neuronames:1370 xref: Wikipedia:Alar_plate relationship: part_of UBERON:0004061 ! neural tube mantle layer property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Gray646.png" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/336" xsd:anyURI [Term] id: UBERON:0005883 name: neural tube lateral wall mantle layer namespace: uberon xref: EHDAA2:0001261 is_a: UBERON:0004061 ! neural tube mantle layer property_value: IAO:0000116 "TODO - expand subtypes post EHDAA2-revision, check lateral wall" xsd:string [Term] id: UBERON:0005970 name: brain commissure namespace: uberon def: "Any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain." [https://github.com/obophenotype/uberon/issues/325, ISBN:0-683-40008-8, MGI:csmith, MP:0002199] subset: pheno_slim xref: EMAPA:37446 {source="MA:th"} is_a: UBERON:0001020 ! nervous system commissure is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000001 "any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain[MP]" xsd:string {date_retrieved="2012-08-08", external_class="MP:0002199", ontology="MP"} [Term] id: UBERON:0005974 name: posterior cerebellomedullary cistern namespace: uberon def: "A space between the cerebellum and the dorsal surface of the medulla[MP]. The cisterna magna (or cerebellomedullary cistern) is one of three principal openings in the subarachnoid space between the arachnoid and pia mater layers of the meninges surrounding the brain. The openings are collectively referred to as cisterns. The cisterna magna is located between the cerebellum and the dorsal surface of the medulla oblongata. Cerebrospinal fluid produced in the fourth ventricle drains into the cisterna magna via the lateral apertures and median aperture. The two other principal cisterns are the pontine cistern located between the pons and the medulla, and the interpeduncular cistern located between the cerebral peduncles. Cerebral spinal fluid can also be obtained by puncture of the cisterna magna (cistern puncture)." [MP:0009036, Wikipedia:Cisterna_magna] subset: pheno_slim synonym: "cisterna cerebellomedullaris" RELATED OMO:0003011 [Wikipedia:Cisterna_magna] synonym: "cisterna cerebellomedullaris posterior" EXACT [MP:0009033] synonym: "cisterna magna" EXACT [MP:0009033] xref: EMAPA:37816 {source="MA:th"} xref: FMA:83721 xref: GAID:690 xref: MESH:D002946 xref: NCIT:C32324 xref: neuronames:542 xref: SCTID:280391002 xref: UMLS:C0008841 {source="ncithesaurus:Cisterna_Magna"} xref: Wikipedia:Cisterna_magna is_a: UBERON:0004049 ! cerebellomedullary cistern property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png" xsd:anyURI [Term] id: UBERON:0005976 name: ansiform lobule crus I namespace: uberon def: "Missing definition for term UBERON:0005976. Please replace it using linked reference." [MP:0010002] subset: pheno_slim synonym: "ansiform lobe of the cerebellum, crus 1" RELATED [NeuroNames:667] synonym: "Cb-Crus I" RELATED OMO:0003000 [HBA:12938] synonym: "crus I" RELATED OMO:0003011 [NeuroNames:667] synonym: "crus I (cerebelli)" RELATED OMO:0003011 [NeuroNames:667] synonym: "crus I of the ansiform lobule" RELATED [NeuroNames:667] synonym: "crus I of the ansiform lobule (HVII)" EXACT [NLXANAT:20081208] synonym: "crus primum lobuli ansiformis cerebelli [h vii a]" EXACT OMO:0003011 [FMA:72524, FMA:TA] synonym: "first crus of ansiform lobule of cerebellum [hVIIa]" EXACT [FMA:72524] synonym: "hemispheric lobule VIIA" EXACT [NLXANAT:20081208] synonym: "lobulus ansiform crus I" EXACT [NLXANAT:20081208] synonym: "lobulus posterior superior" RELATED OMO:0003011 [NeuroNames:667] synonym: "lobulus semilunaris cranialis" RELATED OMO:0003011 [NeuroNames:667] synonym: "lobulus semilunaris rostralis" RELATED OMO:0003011 [NeuroNames:667] synonym: "lobulus semilunaris superior" EXACT [NLXANAT:20081208] synonym: "lobulus semilunaris superior" RELATED OMO:0003011 [NeuroNames:667] synonym: "lobulus semilunaris superior cerebelli" EXACT OMO:0003011 [FMA:72524, FMA:TA] synonym: "posterior superior lobule" EXACT [FMA:72524] synonym: "posterior superior lobule" RELATED [NeuroNames:667] synonym: "semilunar lobule-2 (superior)" EXACT [FMA:72524] synonym: "semilunar lobule-2 (superior)" RELATED [NeuroNames:667] synonym: "superior semilunar lobule" EXACT [FMA:72524] synonym: "superior semilunar lobule" RELATED [NeuroNames:667] synonym: "superior semilunar lobule of cerebellum" EXACT [FMA:72524] xref: BAMS:SSL xref: EMAPA:37398 {source="MA:th"} xref: FMA:72524 xref: HBA:12938 xref: MBA:1056 xref: neuronames:667 xref: NLXANAT:20081208 is_a: UBERON:0005348 ! ansiform lobule is_a: UBERON:0014648 ! hemisphere part of cerebellar posterior lobe relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum relationship: part_of UBERON:0014648 {source="HBA"} ! hemisphere part of cerebellar posterior lobe property_value: IAO:0000116 "synonym with hemispheric lobule VIIA based on FMA and NIFSTD" xsd:string [Term] id: UBERON:0005977 name: ansiform lobule crus II namespace: uberon def: "Missing definition for term UBERON:0005977. Please replace it using linked reference." [MP:0010003] subset: pheno_slim synonym: "ansiform lobe of the cerebellum, crus 2" RELATED [NeuroNames:668] synonym: "Cb-Crus II" RELATED OMO:0003000 [HBA:12939] synonym: "crus 2" RELATED [NeuroNames:668] synonym: "crus 2 of the ansiform lobule" RELATED [NeuroNames:668] synonym: "crus II" RELATED OMO:0003011 [NeuroNames:668] synonym: "crus II of the ansiform lobule (HVII)" EXACT [NLXANAT:20081209] synonym: "crus secundum lobuli ansiformis cerebelli [hVII A]" EXACT OMO:0003011 [FMA:72525, FMA:TA] synonym: "hemispheric lobule VIIBi" EXACT [NLXANAT:20081209] synonym: "inferior semilunar lobule" EXACT [FMA:72525] synonym: "inferior semilunar lobule" RELATED [NeuroNames:668] synonym: "inferior semilunar lobule of cerebellum" EXACT [FMA:72525] synonym: "lobulus ansiform crus II" EXACT [NLXANAT:20081209] synonym: "lobulus posterior inferior" RELATED OMO:0003011 [NeuroNames:668] synonym: "lobulus semilunaris caudalis" RELATED OMO:0003011 [NeuroNames:668] synonym: "lobulus semilunaris inferior" EXACT [NLXANAT:20081209] synonym: "lobulus semilunaris inferior" RELATED OMO:0003011 [NeuroNames:668] synonym: "lobulus semilunaris inferior cerebelli" EXACT OMO:0003011 [FMA:72525, FMA:TA] synonym: "posterior inferior lobule" EXACT [FMA:72525] synonym: "posterior inferior lobule" RELATED [NeuroNames:668] synonym: "second crus of ansiform lobule of cerebellum [hVIIa]" EXACT [FMA:72525] synonym: "semilunar lobule-2 (inferior)" EXACT [FMA:72525] synonym: "semilunar lobule-2 (inferior)" RELATED [NeuroNames:668] xref: BAMS:ISL xref: EMAPA:37399 {source="MA:th"} xref: FMA:72525 xref: HBA:12939 xref: MBA:1064 xref: neuronames:668 xref: NLXANAT:20081209 is_a: UBERON:0005348 ! ansiform lobule is_a: UBERON:0014648 ! hemisphere part of cerebellar posterior lobe relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum relationship: part_of UBERON:0014648 {source="HBA"} ! hemisphere part of cerebellar posterior lobe property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0005978 name: olfactory bulb outer nerve layer namespace: uberon alt_id: UBERON:0015830 def: "Superficial layer of the main olfactory bulb containing axons from the olfactory nerve and glial cells." [NLXANAT:1005010] subset: pheno_slim synonym: "olfactory bulb main olfactory nerve layer" EXACT [NLXANAT:1005010] synonym: "olfactory bulb olfactory nerve layer" EXACT [MA:0003191] xref: DHBA:11326 xref: EMAPA:35614 xref: MA:0003191 xref: MBA:1016 xref: NLXANAT:1005010 is_a: UBERON:0004001 ! olfactory bulb layer property_value: UBPROP:0000001 "the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia" xsd:string {source="MP:0010057"} [Term] id: UBERON:0006007 name: pre-Botzinger complex namespace: uberon def: "The group of interneurons within the medulla oblongata's ventral respiratory group that are important for the generation of ventilatory (inspiratory) rhythmogenesis[MP]." [MP:0010745] comment: the MP class implies this is part of both the medulla oblongata and the PSNS, which violates the spatial disjointness constraint. We weaken this to continuous_with here. subset: pheno_slim synonym: "pre-botzinger respiratory control center" RELATED [MA:0002577] synonym: "Pre-Bötzinger complex" EXACT [Wikipedia:Pre-botzinger_complex] synonym: "preBötC" EXACT [Wikipedia:Pre-botzinger_complex] xref: BAMS:PrBo xref: DHBA:12659 xref: EMAPA:36557 xref: MA:0002577 xref: Wikipedia:Pre-botzinger_complex relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006059 name: falx cerebri namespace: uberon def: "The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age." [Wikipedia:Falx_cerebri] subset: pheno_slim synonym: "cerebral falx" EXACT [FMA:83967] xref: EMAPA:18551 xref: FMA:83967 xref: NCIT:C12890 xref: neuronames:1237 xref: SCTID:279275004 xref: UMLS:C0228120 {source="ncithesaurus:Falx_Cerebri"} xref: Wikipedia:Falx_cerebri relationship: part_of UBERON:0002363 ! dura mater property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/ff/Falxcerebri.jpg" xsd:anyURI [Term] id: UBERON:0006078 name: subdivision of spinal cord lateral column namespace: uberon subset: non_informative is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0005374 ! spinal cord lateral column [Term] id: UBERON:0006079 name: subdivision of spinal cord dorsal column namespace: uberon subset: non_informative synonym: "segment of dorsal funiculus of spinal cord" RELATED [FMA:258190] xref: FMA:258190 is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0005373 ! spinal cord dorsal column [Term] id: UBERON:0006083 name: perirhinal cortex namespace: uberon def: "Region of cortex near to the rhinal sulcus. It is defined differently in different nomenclatures, due in part to the lack of agreement on the definition of the border of this region. In the rat, the perirhinal cortex occupies only caudal levels of the rhinal sulcus while in the monkey, it occurpies the full rostrocaudal extent of the rhinal sulcus (Burwell et al., Hippocampus, 5: 390-408, 1995)." [NLXANAT:1005006] subset: efo_slim subset: human_reference_atlas synonym: "area perirhinalis" RELATED OMO:0003011 [NeuroNames:2425] synonym: "Brodmann's area 35" RELATED [NeuroNames:2425] synonym: "perihinal area" RELATED [BAMS:PERI] synonym: "perirhinal area" EXACT [NLXANAT:1005006] synonym: "perirhinal cortex" EXACT [NLXANAT:1005006] xref: BAMS:PERI xref: BAMS:PRh xref: BM:Tel-Cx-PRh xref: BTO:0004355 xref: EFO:0001978 xref: EMAPA:35682 xref: MA:0000912 xref: MBA:922 xref: MESH:D000071039 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2425 xref: NLXANAT:1005006 xref: PBA:128012080 xref: Wikipedia:Perirhinal_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex relationship: part_of UBERON:0001893 ! telencephalon property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "in MA classified as part of insular cortex, but this is contested by MM - https://support.crbs.ucsd.edu/browse/NIF-9830" xsd:string {external_ontology="MA"} [Term] id: UBERON:0006086 name: stria medullaris namespace: uberon def: "The major afferent track to the habenula from the telencephalon (particularly in the septal side) in all vertebrates[Butler and Hodos]." [ISBN:0471888893] synonym: "SM" BROAD OMO:0003000 [BIRNLEX:1066, NIFSTD:NeuroNames_abbrevSource] synonym: "stria habenularis" EXACT [BIRNLEX:1066] synonym: "stria medularis" RELATED [BAMS:sm] synonym: "stria medullaris (Wenzel-Wenzel)" EXACT [BIRNLEX:1066] synonym: "stria medullaris (Wenzel-Wenzel)" RELATED [NeuroNames:298] synonym: "stria medullaris of thalamus" EXACT [BIRNLEX:1066, FMA:62080] synonym: "stria medullaris of the thalamus" RELATED [NeuroNames:298] synonym: "stria medullaris thalami" EXACT OMO:0003004 [BIRNLEX:1066] synonym: "stria medullaris thalamica" EXACT [BIRNLEX:1066] xref: BAMS:sm xref: BAMS:st xref: BAMS:St.m. xref: BIRNLEX:1066 xref: BM:Die-SM xref: DHBA:10590 xref: DMBA:17794 xref: EMAPA:36607 xref: FMA:62080 xref: HBA:9275 xref: MBA:802 xref: neuronames:298 {source="BIRNLEX:1066"} xref: SCTID:362368004 xref: UMLS:C0228321 {source="BIRNLEX:1066"} xref: Wikipedia:Stria_medullaris_of_thalamus is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis relationship: part_of UBERON:0001897 {source="NIFSTD"} ! dorsal plus ventral thalamus property_value: RO:0002175 NCBITaxon:7742 {source="ISBN:0471888893"} property_value: UBPROP:0000001 "Stria medullaris of thalamus is a slender fiber bundle on the dorsal surface of the diencephalon which terminates posteriorly in the habenular nuclei[FMA:62080]." xsd:string {source="FMA:62080"} property_value: UBPROP:0000012 "this is placed under 'epithalamus related' in MBA" xsd:string [Term] id: UBERON:0006087 name: internal arcuate fiber bundle namespace: uberon def: "Internal arcuate fibers are the axons of second-order neurons contained within the gracile and cuneate nuclei of the medulla oblongata. These fibers cross from one side of the medulla to the other to form the medial lemniscus. Part of the dorsal column-medial lemniscus system (second neuron), the internal arcuate fibers are important for relaying the sensation of fine touch and proprioception to the thalamus and ultimately to the cerebral cortex." [Wikipedia:Internal_arcuate_fibers] synonym: "arcuate fibers (medial lemniscus)" RELATED [NeuroNames:795] synonym: "arcuate fibers medial lemniscus" EXACT [BIRNLEX:1091] synonym: "fibrae arcuatae internae" EXACT OMO:0003011 [FMA:72629, FMA:TA] synonym: "fibre arciformes olivares" RELATED OMO:0003011 [NeuroNames:795] synonym: "fibre arciformes sensibiles" RELATED OMO:0003011 [NeuroNames:795] synonym: "internal arcuate fibers" EXACT [BIRNLEX:1091, FMA:72629] synonym: "internal arcuate fibres" EXACT [FMA:72629] synonym: "internal arcuate tract" EXACT [FMA:72629] xref: BAMS:ia xref: BAMS:iaf xref: BIRNLEX:1091 xref: DHBA:12756 xref: FMA:72629 xref: HBA:265505610 xref: MBA:396 xref: neuronames:795 {source="BIRNLEX:1091"} xref: UMLS:C0228533 {source="BIRNLEX:1091"} xref: Wikipedia:Internal_arcuate_fibers is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0014649 ! white matter of medulla oblongata [Term] id: UBERON:0006088 name: inferior parietal cortex namespace: uberon def: "Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1194] subset: efo_slim subset: human_reference_atlas synonym: "inferior parietal cortex" EXACT [BIRNLEX:1194] synonym: "inferior parietal gyrus" RELATED [NeuroNames:107] synonym: "inferior parietal lobule" EXACT [BIRNLEX:1194, FMA:77536] synonym: "inferior portion of parietal gyrus" RELATED [NeuroNames:107] synonym: "lobulus parietalis inferior" RELATED OMO:0003011 [NeuroNames:107] synonym: "subparietal district" RELATED [NeuroNames:107] synonym: "subparietal lobule" RELATED [NeuroNames:107] xref: BIRNLEX:1194 xref: DHBA:12134 xref: EFO:0001951 xref: FMA:77536 xref: HBA:4103 xref: neuronames:107 {source="BIRNLEX:1194"} xref: SCTID:362336007 xref: UMLS:C0152304 {source="BIRNLEX:1194"} relationship: part_of UBERON:0001872 ! parietal lobe property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006089 name: dorsal external arcuate fiber bundle namespace: uberon synonym: "dorsal external arcuate fiber bundle" EXACT [BIRNLEX:1250] synonym: "dorsal external arcuate fibers" EXACT [BIRNLEX:1250, FMA:72630] synonym: "dorsal external arcuate tract" EXACT [FMA:72630] synonym: "dorsal superficial arcuate fibers" EXACT [BIRNLEX:1250, FMA:72630] synonym: "external arcuate fibers" EXACT [BIRNLEX:1250] synonym: "fibrae arcuatae externae dorsales" RELATED OMO:0003011 [NeuroNames:796] synonym: "fibrae arcuatae externae posteriores" RELATED OMO:0003011 [NeuroNames:796] xref: BAMS:dea xref: BIRNLEX:1250 xref: DHBA:12737 xref: FMA:72630 xref: neuronames:796 {source="BIRNLEX:1250"} xref: UMLS:C0175552 {source="BIRNLEX:1250"} is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006090 name: glossopharyngeal nerve fiber bundle namespace: uberon synonym: "central part of glossopharyngeal nerve" EXACT [BIRNLEX:1274, FMA:72627] synonym: "fibrae nervi glossopharyngei" RELATED OMO:0003011 [NeuroNames:793] synonym: "glossopharyngeal nerve fiber bundle" EXACT [BIRNLEX:1274] synonym: "glossopharyngeal nerve fibers" EXACT [BIRNLEX:1274, FMA:72627] synonym: "glossopharyngeal nerve tract" EXACT [FMA:72627] synonym: "ninth cranial nerve fibers" EXACT [BIRNLEX:1274, FMA:72627] xref: BAMS:9nf xref: BIRNLEX:1274 xref: FMA:72627 xref: neuronames:793 {source="BIRNLEX:1274"} xref: UMLS:C0175550 {source="BIRNLEX:1274"} is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006091 name: inferior horn of the lateral ventricle namespace: uberon def: "The part of the lateral ventricle extending downward and anteriorly in the temporal lobe." [BIRNLEX:1292] subset: human_reference_atlas synonym: "cornu inferius (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83701, FMA:TA] synonym: "cornu inferius ventriculi lateralis" EXACT OMO:0003011 [FMA:83701, FMA:TA] synonym: "cornu temporale (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83701, FMA:TA] synonym: "cornu temporale ventriculi lateralis" EXACT OMO:0003011 [FMA:83701, FMA:TA] synonym: "inferior horn of lateral ventricle" EXACT [FMA:83701] synonym: "inferior horn of the lateral ventricle" EXACT [BIRNLEX:1292] synonym: "temporal horn of lateral ventricle" EXACT [BIRNLEX:1292] synonym: "ventriculus lateralis, cornu inferius" EXACT OMO:0003011 [FMA:83701, FMA:TA] synonym: "ventriculus lateralis, cornu temporale" EXACT OMO:0003011 [FMA:83701, FMA:TA] xref: BAMS:TLV xref: BIRNLEX:1292 xref: DHBA:10600 xref: EMAPA:17771 xref: FMA:83701 xref: neuronames:222 xref: SCTID:362315005 xref: UMLS:C0152283 {source="BIRNLEX:1292"} xref: Wikipedia:Inferior_horn_of_lateral_ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006092 name: cuneus cortex namespace: uberon def: "Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine)." [BIRNLEX:1396] subset: human_reference_atlas synonym: "cuneate lobule" EXACT [BIRNLEX:1396, FMA:61903] synonym: "cuneus" EXACT [BIRNLEX:1396] synonym: "cuneus cortex" EXACT [BIRNLEX:1396] synonym: "cuneus gyrus" EXACT [BIRNLEX:1396, FMA:61903] synonym: "cuneus of hemisphere" EXACT [BIRNLEX:1396, FMA:61903] synonym: "gyrus cuneus" RELATED OMO:0003011 [NeuroNames:157] xref: BAMS:Cun xref: BIRNLEX:1396 xref: DHBA:12150 xref: FMA:61903 xref: HBA:4184 xref: neuronames:157 {source="BIRNLEX:1396"} xref: SCTID:279199007 xref: UMLS:C0152307 {source="BIRNLEX:1396"} xref: Wikipedia:Cuneus is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006093 name: precuneus cortex namespace: uberon def: "Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1446] subset: human_reference_atlas synonym: "medial area of the superior parietal cortex" RELATED [NeuroNames:110] synonym: "praecuneus" RELATED OMO:0003011 [NeuroNames:110] synonym: "precuneate lobule" EXACT [BIRNLEX:1446, FMA:61900] synonym: "precuneus" EXACT [BIRNLEX:1446] synonym: "precuneus cortex" EXACT [BIRNLEX:1446] synonym: "quadrate lobule" EXACT [BIRNLEX:1446, FMA:61900] xref: BAMS:PCu xref: BAMS:PCun xref: BIRNLEX:1446 xref: DHBA:12137 xref: FMA:61900 xref: HBA:4118 xref: NCIT:C112399 xref: neuronames:110 {source="BIRNLEX:1446"} xref: SCTID:279200005 xref: UMLS:C0152306 {source="BIRNLEX:1446"} xref: Wikipedia:Precuneus is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006094 name: superior parietal cortex namespace: uberon def: "Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine)." [BIRNLEX:1450] subset: human_reference_atlas synonym: "gyrus parietalis superior" RELATED OMO:0003011 [NeuroNames:106] synonym: "lobulus parietalis superior" RELATED OMO:0003011 [NeuroNames:106] synonym: "superior parietal cortex" EXACT [BIRNLEX:1450] synonym: "superior parietal gyrus" EXACT [BIRNLEX:1450, FMA:61899] synonym: "superior parietal lobule" EXACT [BIRNLEX:1450] synonym: "superior portion of parietal gyrus" EXACT [BIRNLEX:1450, FMA:61899] xref: BAMS:SPL xref: BIRNLEX:1450 xref: FMA:61899 xref: HBA:4096 xref: neuronames:106 {source="BIRNLEX:1450"} xref: SCTID:279168006 xref: UMLS:C0152303 {source="BIRNLEX:1450"} xref: Wikipedia:Superior_parietal_lobule relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006095 name: anterior transverse temporal area 41 namespace: uberon alt_id: UBERON:0013574 def: "A subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It occupies the anterior transverse temporal gyrus (H) in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Cytoarchitecturally it is bounded medially by the parainsular area 52 (H) and laterally by the posterior transverse temporal area 42 (H) (Brodmann-1909). Adapted from Brain Info." [BIRNLEX:1582] synonym: "anterior transverse temporal area 41" EXACT [FMA:68638] synonym: "anterior transverse termporal area 41" EXACT OMO:0003002 [BIRNLEX:1582] synonym: "area 41 of Brodmann" EXACT [BIRNLEX:1582, FMA:68638] synonym: "area 41 of Brodmann-1909" EXACT [BIRNLEX:1774] synonym: "area temporalis transversa anterior" EXACT [BIRNLEX:1774] synonym: "B09-41" BROAD OMO:0003000 [BIRNLEX:1774, NIFSTD:SumsDB_abbrevSource] synonym: "B09-41" EXACT [BIRNLEX:1774] synonym: "BA41" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 41" EXACT [BIRNLEX:1774] synonym: "Brodmann area 41" EXACT [FMA:68638] synonym: "Brodmann area 41, anterior transverse temporal" EXACT [BIRNLEX:1774] synonym: "Brodmann's area 41" EXACT [BIRNLEX:1582] synonym: "principle auditory receptive areas" EXACT [BIRNLEX:1582] xref: BIRNLEX:1582 xref: BIRNLEX:1774 xref: FMA:68638 xref: neuronames:95 {source="BIRNLEX:1582"} xref: UMLS:C1272502 {source="BIRNLEX:1774"} is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0006096 name: posterior transverse temporal area 42 namespace: uberon alt_id: UBERON:0013575 def: "A subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Cytoarchitecturally it is bounded medially by the anterior transverse temporal area 41(H) and laterally by the superior temporal area 22 (Brodmann-1909). Adapted from Brain Info." [BIRNLEX:1589] synonym: "area 42 of Brodmann" EXACT [BIRNLEX:1589, FMA:68639] synonym: "area 42 of Brodmann-1909" EXACT [BIRNLEX:1775] synonym: "area temporalis transversa posterior" EXACT [BIRNLEX:1775] synonym: "auditory association area" EXACT [BIRNLEX:1589] synonym: "auditory association cortex" RELATED [FMA:236867] synonym: "B09-42" BROAD OMO:0003000 [BIRNLEX:1775, NIFSTD:SumsDB_abbrevSource] synonym: "B09-42" EXACT [BIRNLEX:1775] synonym: "BA42" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 42" EXACT [BIRNLEX:1775] synonym: "Brodmann area 42" EXACT [FMA:68639] synonym: "Brodmann area 42, posterior transverse temporal" EXACT [BIRNLEX:1775] synonym: "Brodmann's area 42" EXACT [BIRNLEX:1589] synonym: "posterior transverse temporal area 42" EXACT [FMA:68639] synonym: "posterior transverse termporal area 42" EXACT OMO:0003002 [BIRNLEX:1589] xref: BIRNLEX:1589 xref: BIRNLEX:1775 xref: FMA:236867 xref: FMA:68639 xref: neuronames:96 {source="BIRNLEX:1589"} xref: UMLS:C1272506 {source="BIRNLEX:1775"} is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0006097 name: ventral external arcuate fiber bundle namespace: uberon synonym: "fibrae arcuatae externae anteriores" RELATED OMO:0003011 [NeuroNames:797] synonym: "fibrae arcuatae externae ventrales" RELATED OMO:0003011 [NeuroNames:797] synonym: "fibrae circumpyramidales" RELATED OMO:0003011 [NeuroNames:797] synonym: "fibre arcuatae superficiales" RELATED OMO:0003011 [NeuroNames:797] synonym: "ventral external arcuate fiber bundle" EXACT [BIRNLEX:1628] synonym: "ventral external arcuate fibers" EXACT [BIRNLEX:1628, FMA:72631] synonym: "ventral external arcuate tract" EXACT [FMA:72631] xref: BAMS:vea xref: BIRNLEX:1628 xref: FMA:72631 xref: neuronames:797 {source="BIRNLEX:1628"} xref: UMLS:C0175553 {source="BIRNLEX:1628"} is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006098 name: basal nuclear complex namespace: uberon def: "The deep nuclei of telencephalic origin found in the basal region of the forebrain." [BIRNLEX:1629] synonym: "basal ganglia" RELATED INCONSISTENT [BIRNLEX:1629] synonym: "basal ganglia (anatomic)" RELATED [NeuroNames:224] synonym: "basal nuclei" EXACT [BIRNLEX:1629] synonym: "basal nuclei of the forebrain" EXACT [BIRNLEX:1629] synonym: "corpus striatum (Savel'ev)" RELATED OMO:0003011 [NeuroNames:224] synonym: "ganglia basales" RELATED OMO:0003011 [NeuroNames:224] xref: BAMS:BG xref: BAMS:BNC xref: BIRNLEX:1629 xref: EV:0100182 xref: MESH:D001479 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:224 {source="BIRNLEX:1629"} xref: UMLS:C0004781 {source="BIRNLEX:1629"} is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019264 ! gray matter of forebrain relationship: part_of UBERON:0002743 ! basal forebrain [Term] id: UBERON:0006099 name: Brodmann (1909) area 1 namespace: uberon def: "Missing definition for term UBERON:0006099. Please replace it using linked reference." [BIRNLEX:1732] synonym: "area 1 of Brodmann" EXACT [FMA:68597] synonym: "area 1 of Brodmann (guenon)" RELATED [NeuroNames:1022] synonym: "area 1 of Brodmann-1909" EXACT [BIRNLEX:1732] synonym: "area postcentralis intermedia" EXACT [BIRNLEX:1732] synonym: "B09-1" BROAD OMO:0003000 [BIRNLEX:1732, NIFSTD:SumsDB_abbrevSource] synonym: "B09-1" EXACT [BIRNLEX:1732] synonym: "BA1" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 1" EXACT [BIRNLEX:1732] synonym: "Brodmann area 1" EXACT [BIRNLEX:1732] synonym: "Brodmann's area 1" EXACT [FMA:68597] synonym: "intermediate postcentral" EXACT [BIRNLEX:1732] synonym: "intermediate postcentral area" EXACT [FMA:68597] xref: BIRNLEX:1732 xref: FMA:68597 xref: neuronames:1022 {source="BIRNLEX:1732"} xref: UMLS:C1272523 {source="BIRNLEX:1732"} xref: Wikipedia:Brodmann_area_1 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006100 name: Brodmann (1909) area 3 namespace: uberon def: "Missing definition for term UBERON:0006100. Please replace it using linked reference." [BIRNLEX:1734] synonym: "area 3 of Brodmann" EXACT [FMA:68599] synonym: "area 3 of Brodmann (guenon)" RELATED [NeuroNames:1006] synonym: "area 3 of Brodmann-1909" EXACT [BIRNLEX:1734] synonym: "area postcentralis oralis" EXACT [BIRNLEX:1734] synonym: "B09-3" BROAD OMO:0003000 [BIRNLEX:1734, NIFSTD:SumsDB_abbrevSource] synonym: "B09-3" EXACT [BIRNLEX:1734] synonym: "BA3" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 3" EXACT [BIRNLEX:1734] synonym: "Brodmann area 3" EXACT [BIRNLEX:1734] synonym: "Brodmann's area 3" EXACT [FMA:68599] synonym: "rostral postcentral" EXACT [BIRNLEX:1734] synonym: "rostral postcentral area" EXACT [FMA:68599] xref: BIRNLEX:1734 xref: FMA:68599 xref: neuronames:1006 {source="BIRNLEX:1734"} xref: UMLS:C1272525 {source="BIRNLEX:1734"} xref: Wikipedia:Brodmann_area_3 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006101 name: Brodmann (1909) area 24 namespace: uberon def: "Missing definition for term UBERON:0006101. Please replace it using linked reference." [BIRNLEX:1755] synonym: "agranular cingulate area" RELATED [NeuroNames:1007] synonym: "anterior cingulate area" RELATED [NeuroNames:1007] synonym: "area 24 of Brodmann" EXACT [FMA:68621] synonym: "area 24 of Brodmann-1905 (guenon)" RELATED [NeuroNames:1007] synonym: "area 24 of Brodmann-1909" EXACT [BIRNLEX:1755] synonym: "area cingularis anterior ventralis" EXACT [BIRNLEX:1755] synonym: "B09-24" BROAD OMO:0003000 [BIRNLEX:1755, NIFSTD:SumsDB_abbrevSource] synonym: "B09-24" EXACT [BIRNLEX:1755] synonym: "BA24" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 24" EXACT [BIRNLEX:1755] synonym: "Brodmann area 24" EXACT [BIRNLEX:1755] synonym: "brodmann's area 24" RELATED [NeuroNames:1007] synonym: "gyrus limbicus anterior" RELATED OMO:0003011 [NeuroNames:1007] synonym: "ventral anterior cingulate" EXACT [BIRNLEX:1755] xref: BAMS:ACA xref: BIRNLEX:1755 xref: FMA:68621 xref: MBA:31 xref: neuronames:1007 {source="BIRNLEX:1755"} xref: UMLS:C1272542 {source="BIRNLEX:1755"} xref: Wikipedia:Brodmann_area_24 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0009835 {source="https://orcid.org/0000-0003-3308-6245"} ! anterior cingulate cortex property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1161" xsd:anyURI [Term] id: UBERON:0006102 name: Brodmann (1909) area 35 namespace: uberon def: "Brodmann area 35, together with Brodmann area 36, is most frequently referred to as perirhinal cortex." [Wikipedia:Brodmann_area_35] synonym: "area 35 of Brodmann" EXACT [FMA:68632] synonym: "area 35 of Brodmann-1909" EXACT [BIRNLEX:1768] synonym: "area perirhinalis" EXACT [BIRNLEX:1768] synonym: "B09-35" BROAD OMO:0003000 [BIRNLEX:1768, NIFSTD:SumsDB_abbrevSource] synonym: "B09-35" EXACT [BIRNLEX:1768] synonym: "BA35" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 35" EXACT [BIRNLEX:1768] synonym: "Brodmann area 35" EXACT [BIRNLEX:1768] synonym: "Brodmann area 35, perirhinal" EXACT [BIRNLEX:1768] synonym: "Brodmann's area 35" EXACT [FMA:68632] synonym: "perirhinal area 35" EXACT [FMA:68632] xref: BIRNLEX:1768 xref: BTO:0004356 xref: FMA:68632 xref: SCTID:384790006 xref: UMLS:C1272496 {source="BIRNLEX:1768"} xref: Wikipedia:Brodmann_area_35 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0006083 {source="WP"} ! perirhinal cortex property_value: UBPROP:0000008 "Brodmann found a cytoarchitecturally homologous area in the monkey (Cercopithecus), but it was so weakly developed that he omitted it from the cortical map of that species (Brodmann-1909)." xsd:string [Term] id: UBERON:0006104 name: Brodmann (1909) area 36 namespace: uberon def: "Ectorhinal area 36 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. With its medial boundary corresponding approximately to the rhinal sulcus it is located primarily in the fusiform gyrus. Cytoarchitecturally it is bounded laterally and caudally by the inferior temporal area 20, medially by the perirhinal area 35 and rostrally by the temporopolar area 38 (H) (Brodmann-1909). Together with Brodmann area 35, it comprises the perirhinal cortex." [Wikipedia:Brodmann_area_36] synonym: "area 36 of Brodmann" EXACT [FMA:68633] synonym: "area 36 of Brodmann-1909" EXACT [BIRNLEX:1769] synonym: "area ectorhinalis" EXACT OMO:0003011 [BIRNLEX:1769] synonym: "B09-36" BROAD OMO:0003000 [BIRNLEX:1769, NIFSTD:SumsDB_abbrevSource] synonym: "B09-36" EXACT [BIRNLEX:1769] synonym: "BA36" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 36" EXACT [BIRNLEX:1769] synonym: "Brodmann area 36" EXACT [BIRNLEX:1769] synonym: "ectorhinal" EXACT [BIRNLEX:1769] synonym: "ectorhinal area 36" EXACT [FMA:68633] xref: BIRNLEX:1769 xref: BTO:0004357 xref: DMBA:16086 xref: FMA:68633 xref: UMLS:C1272497 {source="BIRNLEX:1769"} xref: Wikipedia:Brodmann_area_36 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0006083 {source="WP"} ! perirhinal cortex [Term] id: UBERON:0006107 name: basolateral amygdaloid nuclear complex namespace: uberon def: "A set of amygdalar nuclei comprising the lateral nucleus (LA), the basal nucleus (BA), and the accessory basal nuclei (ABN). These nuclei are bordered laterally by the external capsule and medially by the central amygdalar nucleus as well as the amygdalohippocampal area. This definition refers to the rat Basolateral nuclear complex." [BIRNLEX:2679] subset: human_reference_atlas synonym: "amygdalar basolateral nucleus" EXACT [BIRNLEX:2679] synonym: "amygdaloid basolateral complex" EXACT [BIRNLEX:2679, FMA:84016] synonym: "basolateral amygdala" EXACT [Wikipedia:Basolateral_amygdala] synonym: "basolateral amygdaloid nuclear complex" EXACT [BIRNLEX:2679] synonym: "basolateral complex" RELATED [Wikipedia:Basolateral_amygdala] synonym: "basolateral nuclear complex" EXACT [BIRNLEX:2679] synonym: "basolateral nuclear group" EXACT [BIRNLEX:2679, FMA:84016] synonym: "basolateral nuclei of amygdala" EXACT [FMA:84016] synonym: "basolateral subdivision of amygdala" EXACT [FMA:84609] synonym: "BL" EXACT OMO:0003000 [BIRNLEX:2679] synonym: "pars basolateralis (Corpus amygdaloideum)" EXACT [BIRNLEX:2679] synonym: "set of basolateral nuclei of amygdala" RELATED [FMA:84016] synonym: "vicarious cortex" EXACT [BIRNLEX:2679, FMA:84016] xref: BAMS:ABL xref: BAMS:BL xref: BAMS:BLA xref: BIRNLEX:2679 xref: DHBA:10366 xref: FMA:84609 xref: neuronames:244 {source="BIRNLEX:2679"} xref: PBA:128012678 xref: UMLS:C0175220 {source="BIRNLEX:2679"} xref: Wikipedia:Basolateral_amygdala is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001876 ! amygdala property_value: RO:0002171 UBERON:0002023 {source="ABA"} property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000202 FMA:84016 [Term] id: UBERON:0006108 name: corticomedial nuclear complex namespace: uberon def: "These structures are referred to as nuclei but have a layered cortical like structure. These areas include the anterior amygdaloid area, posterior amygdaloid area, the periamygdaloid cortex, and the bed nucleus of the accessory olfactory tract." [BIRNLEX:2680] synonym: "amygdalar corticomedial nucleus" EXACT [BIRNLEX:2680] synonym: "CMA" EXACT [BIRNLEX:2680] synonym: "corpus amygdaloideum pars corticomedialis" RELATED OMO:0003011 [NeuroNames:238] synonym: "corpus amygdaloideum pars olfactoria" RELATED OMO:0003011 [NeuroNames:238] synonym: "corticomedial nuclear complex" EXACT [BIRNLEX:2680] synonym: "corticomedial nuclear group" EXACT [BIRNLEX:2680, FMA:84015] synonym: "corticomedial nuclei of amygdala" EXACT [FMA:84015] synonym: "pars corticomedialis (Corpus amygdaloideum)" EXACT [BIRNLEX:2680] synonym: "set of corticomedial nuclei of amygdala" EXACT [FMA:84015] xref: BAMS:CMA xref: BIRNLEX:2680 xref: DHBA:10372 xref: FMA:84015 xref: MESH:D066276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:238 {source="BIRNLEX:2680"} xref: UMLS:C0175214 {source="BIRNLEX:2680"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0006114 name: lateral occipital cortex namespace: uberon def: "Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine)." [BIRNLEX:735] synonym: "gyrus occipitalis lateralis" EXACT OMO:0003011 [FMA:61902, FMA:TA] synonym: "gyrus occipitalis medius" RELATED OMO:0003011 [NeuroNames:155] synonym: "gyrus occipitalis medius (mai)" EXACT [FMA:61902] synonym: "gyrus occipitalis secundus" EXACT [FMA:61902] synonym: "lateral occipital cortex" EXACT [BIRNLEX:735] synonym: "lateral occipital gyrus" EXACT [BIRNLEX:735] synonym: "middle occipital gyrus" RELATED [NeuroNames:155] xref: BAMS:LOG xref: BIRNLEX:735 xref: FMA:61902 xref: neuronames:155 {source="BIRNLEX:735"} xref: SCTID:369218006 xref: UMLS:C0228228 {source="BIRNLEX:735"} is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0006115 name: posterior column of fornix namespace: uberon def: "Part of fornix adjacent to the fimbria comprising flattened bands of fibers that extend from the fimbria, running underneath the corpus callosum." [BIRNLEX:754] synonym: "crus fornicis" EXACT OMO:0003011 [FMA:61969, FMA:TA] synonym: "crus of fornix" EXACT [BIRNLEX:754, FMA:61969] synonym: "fornix, crus posterius" EXACT OMO:0003011 [FMA:61969, FMA:TA] synonym: "posterior column of fornix" EXACT [BIRNLEX:754] synonym: "posterior column of fornix of forebrain" EXACT [FMA:61969] synonym: "posterior crus of fornix" EXACT [BIRNLEX:754, FMA:61969] synonym: "posterior pillar of fornix" EXACT [BIRNLEX:754, FMA:61969] xref: BAMS:pfx xref: BIRNLEX:754 xref: DHBA:10579 xref: FMA:61969 xref: HBA:9254 xref: neuronames:272 xref: SCTID:369116002 xref: UMLS:C0228288 {source="BIRNLEX:754"} xref: Wikipedia:Crus_of_fornix is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000052 {source="NIFSTD"} ! fornix of brain [Term] id: UBERON:0006116 name: vagal nerve fiber bundle namespace: uberon synonym: "central part of vagus nerve" EXACT [BIRNLEX:765, FMA:72628] synonym: "fibrae nervi vagi" RELATED OMO:0003011 [NeuroNames:794] synonym: "tenth cranial nerve fibers" EXACT [BIRNLEX:765, FMA:72628] synonym: "vagal nerve fiber bundle" EXACT [BIRNLEX:765] synonym: "vagal nerve fibers" EXACT [BIRNLEX:765, FMA:72628] synonym: "vagal nerve tract" EXACT [FMA:72628] xref: BAMS:10nf xref: BIRNLEX:765 xref: FMA:72628 xref: neuronames:794 {source="BIRNLEX:765"} xref: UMLS:C0175551 {source="BIRNLEX:765"} is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006117 name: accessory nerve fiber bundle namespace: uberon def: "Fibers of the accessory nerve (11th cranial nerve) contained within the medulla." [BIRNLEX:916] synonym: "accessory nerve fiber bundle" EXACT [BIRNLEX:916] synonym: "accessory nerve fibers" EXACT [BIRNLEX:916, FMA:72626] synonym: "accessory nerve tract" EXACT [FMA:72626] synonym: "eleventh cranial nerve fibers" EXACT [FMA:72626] synonym: "fibrae nervi accessorius" RELATED OMO:0003011 [NeuroNames:792] xref: BAMS:11nf xref: BIRNLEX:916 xref: FMA:72626 xref: neuronames:792 {source="BIRNLEX:916"} xref: UMLS:C0175549 {source="BIRNLEX:916"} is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006118 name: lamina I of gray matter of spinal cord namespace: uberon def: "Cytoarchitectural part of spinal cord gray matter." [NLXANAT:100203] synonym: "lamina i of gray matter of spinal cord" EXACT [NLXANAT:100203] synonym: "lamina marginalis" EXACT [FMA:68862, NLXANAT:100203] synonym: "lamina spinalis i" EXACT OMO:0003011 [FMA:68862, FMA:TA] synonym: "layer of Waldeyer" EXACT [NLXANAT:100203] synonym: "layer of waldeyer" EXACT [FMA:68862] synonym: "rexed lamina I" EXACT [NLXANAT:100203] synonym: "rexed lamina i" EXACT [FMA:68862] synonym: "rexed layer 1" EXACT [NLXANAT:100203] synonym: "spinal lamina I" EXACT [NLXANAT:100203] synonym: "spinal lamina i" EXACT [FMA:68862] xref: FMA:68862 xref: neuronames:2138 xref: NLXANAT:100203 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0006119 name: subbrachial nucleus namespace: uberon def: "A group of cells ventral to the nucleus of brachium of inferior colliculus in the mouse (Paxinos-2001)." [NLXANAT:1005003] comment: Candidate definition (refers specifically to mouse): "A group of cells ventral to the nucleus of brachium of inferior colliculus in the mouse (Paxinos-2001)." [NLXANAT:1005003] synonym: "subbrachial nucleus" EXACT [NLXANAT:1005003] synonym: "tegmental area of tsai" EXACT [FMA:77494] xref: BAMS:SubB xref: DHBA:12290 xref: FMA:77494 xref: neuronames:1130 xref: NLXANAT:1005003 is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum [Term] id: UBERON:0006120 name: superior colliculus superficial gray layer namespace: uberon def: "Layer of the superior colliculus, lying just deep to the outermost stratum zonale (Carpenter, A Core Text of Neuroanatomy, 3rd ed., 1985, pg 175)." [NLXANAT:1005034] synonym: "lamina colliculi superioris ii" EXACT OMO:0003011 [FMA:72407, FMA:TA] synonym: "lamina II of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer II of superior colliculus" EXACT [FMA:72407] synonym: "outer gray layer of superior colliculus" EXACT [FMA:72407] synonym: "stratum cinereum" EXACT OMO:0003011 [FMA:72407, FMA:TA] synonym: "stratum griseum superficiale" EXACT OMO:0003011 [FMA:72407, FMA:TA] synonym: "stratum griseum superficiale colliculi superioris" EXACT OMO:0003011 [FMA:72407, FMA:TA] synonym: "stratum griseum superficiale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "superficial gray layer of superior colliculus" EXACT [FMA:72407] synonym: "superficial gray layer of the superior colliculus" RELATED [BAMS:SuG] synonym: "superficial grey layer of superior colliculus" EXACT [FMA:72407] synonym: "superficial grey layer of the superior colliculus" RELATED [BAMS:sgr] synonym: "superior colliculus superficial gray layer" EXACT [NLXANAT:1005034] xref: BAMS:SCsg xref: BAMS:sgr xref: BAMS:SuG xref: DHBA:12295 xref: FMA:72407 xref: HBA:9121 xref: MBA:842 xref: neuronames:1822 xref: NLXANAT:1005034 is_a: UBERON:0006785 {source="FMA"} ! gray matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus property_value: RO:0002171 UBERON:0006779 {source="ABA"} property_value: RO:0002171 UBERON:0006780 {source="ABA"} [Term] id: UBERON:0006121 name: hemispheric lobule VIII namespace: uberon def: "The biventer lobule (or biventral lobule) is triangular in shape; its apex points backward, and is joined by the gray band to the pyramid. The lateral border is separated from the inferior semilunar lobule by the postpyramidal fissure. The base is directed forward, and is on a line with the anterior border of the tonsil, and is separated from the flocculus by the postnodular fissure." [Wikipedia:Biventer_lobule] synonym: "biventer 1 (HVIII)" EXACT [NLXANAT:20081211] synonym: "biventer lobule" EXACT [FMA:72526] synonym: "biventral lobule" EXACT [FMA:72526, NLXANAT:20081211] synonym: "biventral lobule [h VIII]" EXACT [FMA:72526] synonym: "cuneiform lobe" EXACT [FMA:72526] synonym: "dorsal parafloccularis [h VIII b]" EXACT [FMA:72526] synonym: "dorsal paraflocculus" EXACT [FMA:72526] synonym: "hemispheric lobule VIII" EXACT [NLXANAT:20081211] synonym: "lobule H VIII of Larsell" RELATED [FMA:72526] synonym: "lobule VIII of hemisphere of cerebellum" RELATED [FMA:72526] synonym: "lobulus biventer" EXACT [NLXANAT:20081211] synonym: "lobulus biventer [h viii]" EXACT OMO:0003011 [FMA:72526, FMA:TA] synonym: "lobulus biventralis" EXACT OMO:0003011 [FMA:72526, FMA:TA] synonym: "lobulus parafloccularis dorsalis [h viii b]" EXACT OMO:0003011 [FMA:72526, FMA:TA] synonym: "paraflocculus dorsalis" EXACT [NLXANAT:20081211] xref: BAMS:BvL xref: FMA:72526 xref: neuronames:670 xref: NLXANAT:20081211 xref: Wikipedia:Biventer_lobule is_a: UBERON:0004003 ! cerebellum hemisphere lobule is_a: UBERON:0014648 ! hemisphere part of cerebellar posterior lobe relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum [Term] id: UBERON:0006123 name: horizontal limb of the diagonal band namespace: uberon synonym: "crus horizontale striae diagonalis" EXACT OMO:0003011 [FMA:77611, FMA:TA] synonym: "diagonal band horizontal limb" EXACT [NLXANAT:20090303] synonym: "hDBB" EXACT [NLXANAT:20090303] synonym: "horizontal limb of diagonal band" EXACT [FMA:77611] synonym: "horizontal limb of the diagonal band" EXACT [NLXANAT:20090303] synonym: "horizontal limb of the diagonal band of Broca" EXACT [NLXANAT:20090303] synonym: "nucleus of the horizontal limb of the diagonal band" RELATED [BAMS:HDB] xref: BAMS:HDB xref: FMA:77611 xref: neuronames:1154 xref: NLXANAT:20090303 is_a: UBERON:0006125 ! subdivision of diagonal band [Term] id: UBERON:0006124 name: vertical limb of the diagonal band namespace: uberon synonym: "crus verticale striae diagonalis" EXACT OMO:0003011 [FMA:77612, FMA:TA] synonym: "nucleus of the vertical limb of the diagonal band" RELATED [BAMS:VDB] synonym: "vertical limb of diagonal band" EXACT [FMA:77612] synonym: "vertical limb of the diagonal band" EXACT [NLXANAT:20090304] synonym: "vertical limb of the diagonal band of Broca" EXACT [NLXANAT:20090304] xref: BAMS:VDB xref: FMA:77612 xref: neuronames:1876 xref: NLXANAT:20090304 is_a: UBERON:0006125 ! subdivision of diagonal band [Term] id: UBERON:0006125 name: subdivision of diagonal band namespace: uberon subset: non_informative synonym: "diagonal band subdivision" EXACT [FMA:77610] synonym: "regional part of diagonal band" EXACT [NLXANAT:20090302] xref: FMA:77610 xref: NLXANAT:20090302 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002741 {source="NIFSTD"} ! diagonal band of Broca [Term] id: UBERON:0006127 name: funiculus of spinal cord namespace: uberon def: "A funiculus of neuraxis that is part of a spinal cord." [OBOL:automatic] synonym: "spinal cord funiculus" EXACT [FMA:77460] synonym: "white column of spinal cord" EXACT [FMA:77460] xref: FMA:77460 xref: neuronames:2760 is_a: UBERON:0006133 ! funiculus of neuraxis relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002318 ! white matter of spinal cord [Term] id: UBERON:0006133 name: funiculus of neuraxis namespace: uberon def: "The cerebrospinal nerves consist of numerous nerve fibers collected together and enclosed in membranous sheaths. A small bundle of fibers, enclosed in a tubular sheath, is called a funiculus; if the nerve is of small size, it may consist only of a single funiculus; but if large, the funiculi are collected together into larger bundles or fasciculi, which are bound together in a common membranous investment. Examples include: Anterior funiculus of the spinal cord Lateral funiculus of the spinal cord Posterior funiculus of the spinal cord Funiculus solitarius of the medulla Funiculus separans." [Wikipedia:Funiculus_(neurology)] xref: FMA:76738 xref: Wikipedia:Funiculus_(neurology) is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0006134 name: nerve fiber namespace: uberon def: "A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if it is myelinated) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system." [Wikipedia:Nervous_system_fiber] subset: human_reference_atlas synonym: "nerve fibers" RELATED OMO:0003004 [BAMS:nfi] synonym: "nerve fibre" EXACT [FMA:5914] synonym: "neurofibra" EXACT OMO:0003011 [FMA:5914, FMA:TA] synonym: "neurofibra" RELATED OMO:0003011 [Wikipedia:Nerve_fiber] synonym: "neurofibrum" EXACT [FMA:5914] xref: BAMS:nfi xref: FMA:5914 xref: MESH:D009412 xref: SCTID:88545005 xref: Wikipedia:Nervous_system_fiber relationship: part_of UBERON:0001019 ! nerve fasciculus property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "neurofibrous" xsd:string [Term] id: UBERON:0006135 name: myelinated nerve fiber namespace: uberon def: "Axons of neurons encased in a lipoproteinaceous material called myelin. (MeSH)." [ncithesaurus:Myelinated_Nerve_Fiber] subset: pheno_slim xref: FMA:5915 xref: GAID:745 xref: MESH:D009413 xref: NCIT:C12627 xref: SCTID:362296008 xref: UMLS:C0027750 {source="ncithesaurus:Myelinated_Nerve_Fiber"} is_a: UBERON:0006134 ! nerve fiber property_value: IAO:0000116 "consider adding link to UBERON:0002316 ! white matter of neuraxis" xsd:string property_value: RO:0002161 NCBITaxon:117569 property_value: RO:0002161 NCBITaxon:7762 property_value: RO:0002175 NCBITaxon:7776 property_value: UBPROP:0000008 "http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html, http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=6134604, Wikipedia:Myelin#Invertebrate_myelin" xsd:string [Term] id: UBERON:0006136 name: unmyelinated nerve fiber namespace: uberon subset: human_reference_atlas synonym: "non-myelinated nerve fiber" EXACT [FMA:5916] xref: FMA:5916 xref: GAID:767 xref: MESH:D036421 xref: NCIT:C33835 xref: SCTID:46920005 xref: UMLS:C0501409 {source="ncithesaurus:Unmyelinated_Nerve_Fiber"} is_a: UBERON:0006134 ! nerve fiber property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006215 name: rhombic lip namespace: uberon alt_id: UBERON:0013163 def: "The posterior section of the developing metencephalon recognized transiently within the vertebrate embryo; the rhombic lip extends posteriorly from the roof of the fourth ventricle to dorsal neuroepithelial cell and can be divided into eight structural units based on rhombomeres 1-8 (r1-r8), recognized at early stages of hindbrain development; producing granule cells and five brainstem nuclei, the rhombic lip plays an important role in developing a complex cerebellar neural system." [MGI:anna, MP:0012525] subset: pheno_slim subset: vertebrate_core synonym: "cerebellar anlage" RELATED [MGI:anna] synonym: "cerebellar primordium" RELATED [EMAPA:17074] synonym: "cerebellum primordium" RELATED [EHDAA2:0000231, EMAPA:17074] synonym: "dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074] synonym: "future cerebellum" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "presumptive cerebellum" RELATED [MGI:anna] synonym: "rostral rhombic lip" RELATED [MGI:anna] xref: DHBA:10664 xref: EHDAA2:0000231 xref: EMAPA:17074 xref: TAO:0001440 xref: Wikipedia:Rhombic_lips xref: XAO:0004135 xref: ZFA:0001440 relationship: part_of UBERON:0002028 {source="ZFA"} ! hindbrain relationship: part_of UBERON:0010092 {source="EHDAA2", source="Wikipedia"} ! future metencephalon property_value: UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001440", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0006220 name: diencephalic part of interventricular foramen namespace: uberon synonym: "ependymal foramen" RELATED [EMAPA:16901] xref: EHDAA2:0000384 xref: EHDAA:3476 xref: EMAPA:16901 xref: VHOG:0000808 relationship: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0003993 ! interventricular foramen of CNS [Term] id: UBERON:0006232 name: facio-acoustic VII-VIII preganglion complex namespace: uberon subset: emapa_ehdaa2 synonym: "facio-acoustic preganglion complex" RELATED [EMAPA:16660] xref: EHDAA:1477 xref: EMAPA:16660 xref: RETIRED_EHDAA2:0000496 relationship: part_of UBERON:0001714 {source="EHDAA2"} ! cranial ganglion [Term] id: UBERON:0006241 name: future spinal cord namespace: uberon subset: efo_slim subset: vertebrate_core synonym: "presumptive spinal cord" EXACT [ZFA:0000417] synonym: "presumptive spinal cord neural keel" EXACT [TAO:0000417] synonym: "presumptive spinal cord neural plate" EXACT [TAO:0000417] synonym: "presumptive spinal cord neural rod" EXACT [TAO:0000417] xref: EFO:0003438 xref: EHDAA2:0000674 xref: EHDAA:898 xref: EMAPA:16092 xref: EMAPA:16755 xref: TAO:0000417 xref: ZFA:0000417 relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0006243 name: glossopharyngeal IX preganglion namespace: uberon subset: emapa_ehdaa2 synonym: "glossopharyngeal preganglion" RELATED [EMAPA:16661] xref: EHDAA:1479 xref: EMAPA:16661 xref: RETIRED_EHDAA2:0000713 relationship: part_of UBERON:0001714 ! cranial ganglion [Term] id: UBERON:0006250 name: infundibular recess of 3rd ventricle namespace: uberon def: "A funnel-shaped diverticulum that extends downward from the anterior aspect of the floor of the third ventricle into the infundibulum of the hypophysis; the embryonic structure gives rise the neural component of the pituitary (pas nervosa)." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1930/, MGI:anna] subset: pheno_slim synonym: "infundibular reccess" RELATED [BAMS:IRe] synonym: "infundibular recess" EXACT [FMA:78456] synonym: "infundibular recess of third ventricle" EXACT [FMA:78456] synonym: "recessus infundibularis" EXACT OMO:0003011 [FMA:TA] synonym: "recessus infundibuli" EXACT OMO:0003011 [FMA:TA] synonym: "recessus infundibuli" RELATED OMO:0003011 [Wikipedia:Infundibular_recess] synonym: "third ventricle infundibular recess" RELATED [BAMS:V3ir] xref: BAMS:IRe xref: BAMS:V3ir xref: EHDAA2:0000827 xref: EHDAA:4479 xref: EMAPA:16899 xref: EMAPA_RETIRED:16648 xref: FMA:78456 xref: neuronames:458 xref: SCTID:369280006 xref: Wikipedia:Infundibular_recess relationship: part_of UBERON:0002286 {source="EMAPA"} ! third ventricle relationship: part_of UBERON:0034876 {source="EMAPA"} ! future neurohypophysis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray654.png" xsd:anyURI property_value: IAO:0000116 "in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac" xsd:string [Term] id: UBERON:0006253 name: embryonic intraretinal space namespace: uberon def: "The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina." [VHOG:0000534] subset: emapa_ehdaa2 synonym: "intraretinal space" EXACT [EHDAA2:0000889] synonym: "intraretinal space of optic cup" EXACT [EMAPA:16676] synonym: "intraretinal space of retina" EXACT [EMAPA:17170] synonym: "retina intraretinal space" EXACT [VHOG:0000534] xref: EHDAA2:0000889 xref: EHDAA:4761 xref: EMAPA:16676 xref: EMAPA:17170 xref: VHOG:0000534 relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000001 "The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000534", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/intraretinal+space"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000534", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"} [Term] id: UBERON:0006284 name: early prosencephalic vesicle namespace: uberon def: "Future brain vesicle that gives rise to telencephalic ventricle/lateral ventricles and 3rd ventricle." [https://orcid.org/0000-0002-6601-2165] synonym: "forebrain ventricle" RELATED [VHOG:0000644] synonym: "forebrain vesicle" RELATED [VHOG:0000644] synonym: "preevaginated forebrain vesicle" NARROW [] synonym: "prosencephalic ventricle" RELATED [VHOG:0000644] synonym: "prosencephalic vesicle" EXACT [EHDAA2:0001571] xref: DHBA:10595 xref: EHDAA2:0001571 xref: EHDAA:1356 xref: EMAPA:16521 xref: SCTID:361480006 xref: TAO:0001259 xref: VHOG:0000644 xref: ZFA:0001259 is_a: UBERON:0013150 ! future brain vesicle property_value: UBPROP:0000003 "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000644", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} [Term] id: UBERON:0006301 name: telencephalic part of interventricular foramen namespace: uberon xref: EHDAA2:0001980 xref: EHDAA:5474 xref: EMAPA:16915 xref: VHOG:0000809 relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0003993 ! interventricular foramen of CNS [Term] id: UBERON:0006319 name: spinal cord reticular nucleus namespace: uberon synonym: "reticular nucleus of the spinal cord" RELATED [BAMS:RS] synonym: "spinal reticular nucleus" EXACT [FMA:73909] xref: BAMS:RS xref: EMAPA:37749 {source="MA:th"} xref: FMA:73909 xref: MA:0001123 xref: neuronames:1694 is_a: UBERON:0002315 ! gray matter of spinal cord is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0006331 name: brainstem nucleus namespace: uberon def: "A nucleus of brain that is part of a brainstem." [OBOL:automatic] synonym: "brain stem nucleus" RELATED [EMAPA:32790] xref: EMAPA:32790 xref: MA:0000821 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0006338 name: lateral ventricle choroid plexus stroma namespace: uberon def: "A choroid plexus stroma that is part of a lateral ventricle." [OBOL:automatic] xref: MA:0000963 is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle property_value: IAO:0000116 "definitions should be fixed to use generic stroma class" xsd:string [Term] id: UBERON:0006339 name: third ventricle choroid plexus stroma namespace: uberon def: "A choroid plexus stroma that is part of a third ventricle." [OBOL:automatic] xref: EMAPA:37056 {source="MA:th"} xref: MA:0000881 is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle [Term] id: UBERON:0006340 name: fourth ventricle choroid plexus stroma namespace: uberon def: "A choroid plexus stroma that is part of a fourth ventricle." [OBOL:automatic] xref: MA:0000985 is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0006377 name: remnant of Rathke's pouch namespace: uberon synonym: "hypophyseal cleft" RELATED [MA:0000857] xref: EMAPA:17518 xref: MA:0000857 relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0006445 name: caudal middle frontal gyrus namespace: uberon def: "Component of the middle frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1083] synonym: "caudal middle frontal gyrus" EXACT [BIRNLEX:1083] synonym: "caudal part of middle frontal gyrus" RELATED [FMA:70688] synonym: "posterior part of middle frontal gyrus" EXACT [FMA:70688] xref: BIRNLEX:1083 xref: FMA:70688 is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0002702 ! middle frontal gyrus [Term] id: UBERON:0006446 name: rostral middle frontal gyrus namespace: uberon def: "Component of the middle frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1090] synonym: "anterior part of middle frontal gyrus" EXACT [FMA:70687] synonym: "rostral middle frontal gyrus" EXACT [BIRNLEX:1090] synonym: "rostral part of middle frontal gyrus" RELATED [FMA:70687] xref: BIRNLEX:1090 xref: FMA:70687 is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002702 ! middle frontal gyrus [Term] id: UBERON:0006447 name: L5 segment of lumbar spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fifth lumbar vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fifth lumbar spinal cord segment" EXACT [BIRNLEX:1251] synonym: "L5 segment" EXACT [FMA:71191] synonym: "L5 spinal cord segment" EXACT [BIRNLEX:1251] xref: BIRNLEX:1251 xref: FMA:71191 xref: SCTID:278775008 xref: UMLS:C0457871 {source="BIRNLEX:1251"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006448 name: L1 segment of lumbar spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the first lumbar vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "first lumbar spinal cord segment" EXACT [BIRNLEX:1336] synonym: "L1 segment" EXACT [FMA:71187] synonym: "L1 spinal cord segment" EXACT [BIRNLEX:1336] xref: BIRNLEX:1336 xref: FMA:71187 xref: SCTID:278776009 xref: UMLS:C0457872 {source="BIRNLEX:1336"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006449 name: L3 segment of lumbar spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the third lumbar vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "L3 segment" EXACT [FMA:71189] synonym: "L3 spinal cord segment" EXACT [BIRNLEX:1340] synonym: "third lumbar spinal cord segment" EXACT [BIRNLEX:1340] xref: BIRNLEX:1340 xref: FMA:71189 xref: SCTID:278778005 xref: UMLS:C0457874 {source="BIRNLEX:1340"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006450 name: L2 segment of lumbar spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the second lumbar vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "l2 segment" EXACT [FMA:71188] synonym: "L2 spinal cord segment" EXACT [BIRNLEX:1345] synonym: "second lumbar spinal cord segment" EXACT [BIRNLEX:1345] xref: BIRNLEX:1345 xref: FMA:71188 xref: SCTID:278777000 xref: UMLS:C0457873 {source="BIRNLEX:1345"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006451 name: L4 segment of lumbar spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fourth lumbar vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fourth lumbar spinal cord segment" EXACT [BIRNLEX:1352] synonym: "L4 segment" EXACT [FMA:71190] synonym: "L4 spinal cord segment" EXACT [BIRNLEX:1352] xref: BIRNLEX:1352 xref: FMA:71190 xref: SCTID:278779002 xref: UMLS:C0457875 {source="BIRNLEX:1352"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006452 name: T4 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fourth thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fourth thoracic spinal cord segment" EXACT [BIRNLEX:1378] synonym: "T4 segment" EXACT [FMA:71170] synonym: "T4 segment of spinal cord" EXACT [] synonym: "T4 spinal cord segment" EXACT [BIRNLEX:1378] xref: BIRNLEX:1378 xref: FMA:71170 xref: SCTID:278766006 xref: UMLS:C0457862 {source="BIRNLEX:1378"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006453 name: T5 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fifth thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fifth thoracic spinal cord segment" EXACT [BIRNLEX:1383] synonym: "t5 segment" EXACT [FMA:71171] synonym: "T5 spinal cord segment" EXACT [BIRNLEX:1383] xref: BIRNLEX:1383 xref: FMA:71171 xref: SCTID:278767002 xref: UMLS:C0457863 {source="BIRNLEX:1383"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006454 name: T6 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the sixth thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "sixth thoracic spinal cord segment" EXACT [BIRNLEX:1387] synonym: "t6 segment" EXACT [FMA:71172] synonym: "T6 spinal cord segment" EXACT [BIRNLEX:1387] xref: BIRNLEX:1387 xref: FMA:71172 xref: SCTID:278768007 xref: UMLS:C0457864 {source="BIRNLEX:1387"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006455 name: T7 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the seventh thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "seventh thoracic spinal cord segment" EXACT [BIRNLEX:1392] synonym: "t7 segment" EXACT [FMA:71173] synonym: "T7 spinal cord segment" EXACT [BIRNLEX:1392] xref: BIRNLEX:1392 xref: FMA:71173 xref: SCTID:278769004 xref: UMLS:C0457865 {source="BIRNLEX:1392"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006456 name: T8 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the eighth thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "eighth thoracic spinal cord segment" EXACT [BIRNLEX:1398] synonym: "t8 segment" EXACT [FMA:71174] synonym: "T8 spinal cord segment" EXACT [BIRNLEX:1398] xref: BIRNLEX:1398 xref: FMA:71174 xref: SCTID:278770003 xref: UMLS:C0457866 {source="BIRNLEX:1398"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006457 name: T1 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the first thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "first thoracic spinal cord segment" EXACT [BIRNLEX:1452] synonym: "t1 segment" EXACT [FMA:62421] synonym: "T1 spinal cord segment" EXACT [BIRNLEX:1452] xref: BIRNLEX:1452 xref: FMA:62421 xref: SCTID:278762008 xref: UMLS:C0457859 {source="BIRNLEX:1452"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006458 name: T2 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the second thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "second thoracic spinal cord segment" EXACT [BIRNLEX:1454] synonym: "t2 segment" EXACT [FMA:62422] synonym: "T2 spinal cord segment" EXACT [BIRNLEX:1454] xref: BIRNLEX:1454 xref: FMA:62422 xref: SCTID:278763003 xref: UMLS:C0457860 {source="BIRNLEX:1454"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006459 name: T3 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the third thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "t3 segment" EXACT [FMA:71169] synonym: "T3 spinal cord segment" EXACT [BIRNLEX:1458] synonym: "third thoracic spinal cord segment" EXACT [BIRNLEX:1458] xref: BIRNLEX:1458 xref: FMA:71169 xref: SCTID:278764009 xref: UMLS:C0457861 {source="BIRNLEX:1458"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006460 name: S1 segment of sacral spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the first sacral vertebra in most mammals." [PMID:26724926] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "first sacral spinal cord segment" EXACT [BIRNLEX:1532] synonym: "S1 segment" EXACT [FMA:256625] synonym: "S1 spinal cord segment" EXACT [BIRNLEX:1532] xref: BIRNLEX:1532 xref: FMA:256625 xref: SCTID:278780004 xref: UMLS:C0457876 {source="BIRNLEX:1532"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006461 name: S2 segment of sacral spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the second sacral vertebra in most mammals." [PMID:26724926] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "S2 segment" EXACT [FMA:256627] synonym: "S2 spinal cord segment" EXACT [BIRNLEX:1539] synonym: "second sacral spinal cord segment" EXACT [BIRNLEX:1539] xref: BIRNLEX:1539 xref: FMA:256627 xref: SCTID:278781000 xref: UMLS:C0457877 {source="BIRNLEX:1539"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006462 name: S3 segment of sacral spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the third sacral vertebra in most mammals." [PMID:26724926] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "S3 segment" EXACT [FMA:256629] synonym: "S3 spinal cord segment" EXACT [BIRNLEX:1544] synonym: "third sacral spinal cord segment" EXACT [BIRNLEX:1544] xref: BIRNLEX:1544 xref: FMA:256629 xref: SCTID:278782007 xref: UMLS:C0457878 {source="BIRNLEX:1544"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006463 name: S4 segment of sacral spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fourth sacral vertebra in most mammals." [PMID:26724926] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fourth sacral spinal cord segment" EXACT [BIRNLEX:1548] synonym: "S4 segment" EXACT [FMA:256631] synonym: "S4 spinal cord segment" EXACT [BIRNLEX:1548] xref: BIRNLEX:1548 xref: FMA:256631 xref: SCTID:278783002 xref: UMLS:C0457879 {source="BIRNLEX:1548"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006464 name: S5 segment of sacral spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fifth sacral vertebra in most mammals." [PMID:26724926] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fifth sacral spinal cord segment" EXACT [BIRNLEX:1553] synonym: "S5 segment" EXACT [FMA:256633] synonym: "S5 spinal cord segment" EXACT [BIRNLEX:1553] xref: BIRNLEX:1553 xref: FMA:256633 xref: SCTID:278784008 xref: UMLS:C0457880 {source="BIRNLEX:1553"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006465 name: T9 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the ninth thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "ninth thoracic spinal cord segment" EXACT [BIRNLEX:1584] synonym: "t9 segment" EXACT [FMA:71175] synonym: "T9 spinal cord segment" EXACT [BIRNLEX:1584] xref: BIRNLEX:1584 xref: FMA:71175 xref: SCTID:278771004 xref: UMLS:C0457867 {source="BIRNLEX:1584"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006466 name: T10 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the tenth thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "t10 segment" EXACT [FMA:71176] synonym: "T10 spinal cord segment" EXACT [BIRNLEX:1591] synonym: "tenth thoracic spinal cord segment" EXACT [BIRNLEX:1591] xref: BIRNLEX:1591 xref: FMA:71176 xref: SCTID:278772006 xref: UMLS:C0457868 {source="BIRNLEX:1591"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006467 name: T11 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the eleventh thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "eleventh thoracic spinal cord segment" EXACT [BIRNLEX:1596] synonym: "t11 segment" EXACT [FMA:71177] synonym: "T11 spinal cord segment" EXACT [BIRNLEX:1596] xref: BIRNLEX:1596 xref: FMA:71177 xref: SCTID:278773001 xref: UMLS:C0457869 {source="BIRNLEX:1596"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006468 name: T12 segment of thoracic spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the twelfth thoracic vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "t12 segment" EXACT [FMA:71178] synonym: "T12 spinal cord segment" EXACT [BIRNLEX:1598] synonym: "twelfth thoracic spinal cord segment" EXACT [BIRNLEX:1598] xref: BIRNLEX:1598 xref: FMA:71178 xref: SCTID:278774007 xref: UMLS:C0457870 {source="BIRNLEX:1598"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006469 name: C1 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the first cervical vertebra in most mammals." [https://github.com/obophenotype/uberon/issues/725, PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C1 cervical spinal cord" EXACT [] synonym: "C1 segment" EXACT [FMA:71179] synonym: "C1 spinal cord segment" EXACT [BIRNLEX:1694] synonym: "first cervical spinal cord segment" EXACT [BIRNLEX:1694] xref: BIRNLEX:1694 xref: FMA:71179 xref: SCTID:278754000 xref: UMLS:C0457851 {source="BIRNLEX:1694"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006470 name: C8 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the eighth cervical vertebra in most mammals." [PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C8 segment" EXACT [FMA:71186] synonym: "C8 spinal cord segment" EXACT [BIRNLEX:1696] synonym: "eighth cervical spinal cord segment" EXACT [BIRNLEX:1696] xref: BIRNLEX:1696 xref: FMA:71186 xref: SCTID:278761001 xref: UMLS:C0457858 {source="BIRNLEX:1696"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006471 name: Brodmann (1909) area 5 namespace: uberon def: "Brodmann area 5 is one of Brodmann's cytologically defined regions of the brain. It is involved in somatosensory processing and association." [Wikipedia:Brodmann_area_5] synonym: "area 5 of Brodmann" RELATED [FMA:68601] synonym: "area 5 of Brodmann (guenon)" RELATED [NeuroNames:1015] synonym: "area 5 of Brodmann-1909" EXACT [BIRNLEX:1736] synonym: "area praeparietalis" EXACT [BIRNLEX:1736] synonym: "B09-5" BROAD OMO:0003000 [BIRNLEX:1736, NIFSTD:SumsDB_abbrevSource] synonym: "B09-5" EXACT [BIRNLEX:1736] synonym: "BA5" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 5" EXACT [BIRNLEX:1736] synonym: "Brodmann area 5" EXACT [FMA:68601] synonym: "Brodmann area 5, preparietal" EXACT [BIRNLEX:1736] synonym: "brodmann's area 5" RELATED [NeuroNames:1015] synonym: "preparietal area" RELATED [NeuroNames:1015] synonym: "preparietal area 5" EXACT [FMA:68601] synonym: "preparietal area 5" RELATED [Wikipedia:Brodmann_area_5] synonym: "secondary somatosensory cortex" RELATED [Wikipedia:Brodmann_area_5] xref: BIRNLEX:1736 xref: FMA:68601 xref: neuronames:1015 {source="BIRNLEX:1736"} xref: SCTID:384764008 xref: UMLS:C1272527 {source="BIRNLEX:1736"} xref: Wikipedia:Brodmann_area_5 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Brodmann_areas_5.png" xsd:anyURI [Term] id: UBERON:0006472 name: Brodmann (1909) area 6 namespace: uberon def: "Brodmann area 6, or BA6, is part of the frontal cortex in the human brain. Situated just anterior to the primary motor cortex, it is composed of the premotor cortex and, medially, the supplementary motor area, or SMA. This large area of the frontal cortex is believed to play a role in the planning of complex, coordinated movements. Brodmann area 6 is also called agranular frontal area 6 in humans because it lacks an internal granular cortical layer (layer IV). It is a subdivision of the cytoarchitecturally defined precentral region of cerebral cortex. In the human brain, it is located on the portions of the precentral gyrus that are not occupied by the gigantopyramidal area 4; furthermore, BA6 extends onto the caudal portions of the superior frontal and middle frontal gyri. It extends from the cingulate sulcus on the medial aspect of the hemisphere to the lateral sulcus on the lateral aspect. It is bounded rostrally by the granular frontal region and caudally by the gigantopyramidal area 4 (Brodmann, 1909)." [Wikipedia:Brodmann_area_6] synonym: "agranular frontal area" RELATED [NeuroNames:1020] synonym: "agranular frontal area 6" EXACT [FMA:68602] synonym: "agranular frontal area 6" RELATED [Wikipedia:Brodmann_area_6] synonym: "area 6 of Brodmann" EXACT [FMA:68602] synonym: "area 6 of Brodmann (guenon)" RELATED [NeuroNames:1020] synonym: "area 6 of Brodmann-1909" EXACT [BIRNLEX:1737] synonym: "area frontalis agranularis" EXACT [BIRNLEX:1737] synonym: "B09-6" BROAD OMO:0003000 [BIRNLEX:1737, NIFSTD:SumsDB_abbrevSource] synonym: "B09-6" EXACT [BIRNLEX:1737] synonym: "BA6" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 6" EXACT [BIRNLEX:1737] synonym: "Brodmann area 6" EXACT [FMA:68602] synonym: "Brodmann area 6, agranular frontal" EXACT [BIRNLEX:1737] synonym: "brodmann's area 6" RELATED [NeuroNames:1020] synonym: "frontal belt" EXACT [FMA:68602] xref: BIRNLEX:1737 xref: FMA:68602 xref: neuronames:1020 {source="BIRNLEX:1737"} xref: SCTID:384765009 xref: UMLS:C1272528 {source="BIRNLEX:1737"} xref: Wikipedia:Brodmann_area_6 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/1/11/Brodmann_areas_6.png" xsd:anyURI [Term] id: UBERON:0006473 name: Brodmann (1909) area 18 namespace: uberon synonym: "area 18 of Brodmann" EXACT [FMA:68615] synonym: "area 18 of Brodmann (guenon)" RELATED [NeuroNames:1027] synonym: "area 18 of Brodmann-1909" EXACT [BIRNLEX:1749] synonym: "area occipitalis" RELATED OMO:0003011 [NeuroNames:1027] synonym: "area parastriata" EXACT OMO:0003011 [BIRNLEX:1749, Wikipedia:Brodmann_area_18] synonym: "B09-18" BROAD OMO:0003000 [BIRNLEX:1749, NIFSTD:SumsDB_abbrevSource] synonym: "B09-18" EXACT [BIRNLEX:1749] synonym: "BA18" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 18" EXACT [BIRNLEX:1749] synonym: "Brodmann area 18" EXACT [FMA:68615] synonym: "Brodmann area 18, parastriate" EXACT [BIRNLEX:1749] synonym: "Brodmann's area 18" EXACT [FMA:68615] synonym: "occipital area" RELATED [NeuroNames:1027] synonym: "parastriate area 18" EXACT [FMA:68615] synonym: "secondary visual area" EXACT [FMA:68615] synonym: "V2" RELATED [Wikipedia:Brodmann_area_18] synonym: "visual area II" EXACT [FMA:68615] synonym: "visual area two" RELATED [Wikipedia:Visual_cortex] xref: BIRNLEX:1749 xref: DHBA:10271 xref: FMA:68615 xref: neuronames:1027 {source="BIRNLEX:1749"} xref: PBA:10039 xref: SCTID:384773000 xref: UMLS:C1272536 {source="BIRNLEX:1749"} xref: Wikipedia:Brodmann_area_18 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0014370 {source="WP"} ! extrastriate cortex [Term] id: UBERON:0006474 name: Brodmann (1909) area 30 namespace: uberon def: "Brodmann area 30, also known as agranular retrolimbic area 30, is a subdivision of the cytoarchitecturally defined retrosplenial region of the cerebral cortex. In the human it is located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the granular retrolimbic area 29, dorsally by the ventral posterior cingulate area 23 and ventrolaterally by the ectorhinal area 36 (Brodmann-1909)." [Wikipedia:Brodmann_area_30] synonym: "agranular retrolimbic area 30" EXACT [FMA:68627] synonym: "area 30 of Brodmann" EXACT [FMA:68627] synonym: "area 30 of Brodmann-1909" EXACT [BIRNLEX:1764] synonym: "area retrolimbica agranularis" EXACT [BIRNLEX:1764] synonym: "area retrosplenialis agranularis" EXACT OMO:0003011 [Wikipedia:Brodmann_area_30] synonym: "B09-30" BROAD OMO:0003000 [BIRNLEX:1764, NIFSTD:SumsDB_abbrevSource] synonym: "B09-30" EXACT [BIRNLEX:1764] synonym: "BA30" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 30" EXACT [BIRNLEX:1764] synonym: "Brodmann area 30" EXACT [FMA:68627] synonym: "Brodmann area 30, agranular retrolimbic" EXACT [BIRNLEX:1764] synonym: "Brodmann's area 30" EXACT [FMA:68627] xref: BIRNLEX:1764 xref: FMA:68627 xref: neuronames:2424 xref: SCTID:384784007 xref: UMLS:C1272491 {source="BIRNLEX:1764"} xref: Wikipedia:Brodmann_area_30 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006475 name: Brodmann (1909) area 31 namespace: uberon def: "Brodmann area 31, also known as dorsal posterior cingulate area 31, is a subdivision of the cytoarchitecturally defined cingulate region of the cerebral cortex. In the human it occupies portions of the posterior cingulate gyrus and medial aspect of the parietal lobe. Approximate boundaries are the cingulate sulcus dorsally and the parieto-occipital sulcus caudally. It partially surrounds the subparietal sulcus, the ventral continuation of the cingulate sulcus in the parietal lobe. Cytoarchitecturally it is bounded rostrally by the ventral anterior cingulate area 24, ventrally by the ventral posterior cingulate area 23, dorsally by the gigantopyramidal area 4 and preparietal area 5 and caudally by the superior parietal area 7 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_31] synonym: "area 31 of Brodmann" EXACT [FMA:68628] synonym: "area 31 of Brodmann-1909" EXACT [BIRNLEX:1765] synonym: "area cingularis posterior dorsalis" EXACT OMO:0003011 [BIRNLEX:1765, Wikipedia:Brodmann_area_31] synonym: "B09-31" BROAD OMO:0003000 [BIRNLEX:1765, NIFSTD:SumsDB_abbrevSource] synonym: "B09-31" EXACT [BIRNLEX:1765] synonym: "BA31" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 31" EXACT [BIRNLEX:1765] synonym: "Brodmann area 31" EXACT [FMA:68628] synonym: "Brodmann area 31, dorsal posterior cingulate" EXACT [BIRNLEX:1765] synonym: "Brodmann's area 31" EXACT [FMA:68628] synonym: "cinguloparietal transition area" EXACT [FMA:68628] synonym: "dorsal posterior cingulate area 31" EXACT [FMA:68628] xref: BIRNLEX:1765 xref: FMA:68628 xref: neuronames:2415 xref: SCTID:384785008 xref: UMLS:C1272492 {source="BIRNLEX:1765"} xref: Wikipedia:Brodmann_area_31 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Brodmann_Cytoarchitectonics_31.png" xsd:anyURI [Term] id: UBERON:0006476 name: Brodmann (1909) area 33 namespace: uberon def: "Brodmann area 33, also known as pregenual area 33, is a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. It is a narrow band located in the anterior cingulate gyrus adjacent to the supracallosal gyrus in the depth of the callosal sulcus, near the genu of the corpus callosum. Cytoarchitecturally it is bounded by the ventral anterior cingulate area 24 and the supracallosal gyrus (Brodmann-1909)." [Wikipedia:Brodmann_area_33] synonym: "area 33 of Brodmann" EXACT [FMA:68630] synonym: "area 33 of Brodmann-1909" EXACT [BIRNLEX:1766] synonym: "area praegenualis" EXACT OMO:0003011 [BIRNLEX:1766, Wikipedia:Brodmann_area_33] synonym: "B09-33" BROAD OMO:0003000 [BIRNLEX:1766, NIFSTD:SumsDB_abbrevSource] synonym: "B09-33" EXACT [BIRNLEX:1766] synonym: "BA33" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 33" EXACT [BIRNLEX:1766] synonym: "Brodmann area 33" EXACT [FMA:68630] synonym: "Brodmann area 33, pregenual" EXACT [BIRNLEX:1766] synonym: "Brodmann's area 33" EXACT [FMA:68630] synonym: "pregenual area 33" EXACT [FMA:68630] xref: BIRNLEX:1766 xref: FMA:68630 xref: neuronames:2423 xref: SCTID:384788005 xref: UMLS:C1272494 {source="BIRNLEX:1766"} xref: Wikipedia:Brodmann_area_33 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0006477 name: Brodmann (1909) area 34 namespace: uberon def: "Brodmann area 34 is a part of the brain. It has been described as part of the entorhinal area. It has been described as part of the superior temporal gyrus." [Wikipedia:Brodmann_area_34] synonym: "area 34 of Brodmann" EXACT [FMA:68631] synonym: "area 34 of Brodmann-1909" EXACT [BIRNLEX:1767] synonym: "area entorhinalis dorsalis" EXACT OMO:0003011 [BIRNLEX:1767, Wikipedia:Brodmann_area_34] synonym: "B09-34" BROAD OMO:0003000 [BIRNLEX:1767, NIFSTD:SumsDB_abbrevSource] synonym: "B09-34" EXACT [BIRNLEX:1767] synonym: "BA34" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 34" EXACT [BIRNLEX:1767] synonym: "Brodmann area 34" EXACT [FMA:68631] synonym: "Brodmann area 34, dorsal entorhinal" EXACT [BIRNLEX:1767] synonym: "dorsal entorhinal area 34" EXACT [FMA:68631] xref: BIRNLEX:1767 xref: FMA:68631 xref: neuronames:2115 xref: SCTID:384789002 xref: UMLS:C1272495 {source="BIRNLEX:1767"} xref: Wikipedia:Brodmann_area_34 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006478 name: Brodmann (1909) area 37 namespace: uberon def: "Brodmann area 37, or BA37, is part of the temporal cortex in the human brain. This area is known as occipitotemporal area 37 (H). It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the caudal portions of the fusiform gyrus and inferior temporal gyrus on the mediobasal and lateral surfaces at the caudal extreme of the temporal lobe. Cytoarchitecturally it is bounded caudally by the peristriate Brodmann area 19, rostrally by the inferior temporal area 20 and middle temporal area 21 and dorsally on the lateral aspect of the hemisphere by the angular area 39 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_37] synonym: "area 37 0f brodmann" EXACT [FMA:68634] synonym: "area 37 of Brodmann-1909" EXACT [BIRNLEX:1770] synonym: "area occipitotemporalis" EXACT OMO:0003011 [BIRNLEX:1770, Wikipedia:Brodmann_area_37] synonym: "B09-37" BROAD OMO:0003000 [BIRNLEX:1770, NIFSTD:SumsDB_abbrevSource] synonym: "B09-37" EXACT [BIRNLEX:1770] synonym: "BA37" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 37" EXACT [BIRNLEX:1770] synonym: "Brodmann area 37" EXACT [FMA:68634] synonym: "Brodmann area 37, occipitotemporal" EXACT [BIRNLEX:1770] synonym: "occipitotemporal area 37" EXACT [FMA:68634] xref: BIRNLEX:1770 xref: FMA:68634 xref: neuronames:2411 xref: SCTID:384792003 xref: UMLS:C1272498 {source="BIRNLEX:1770"} xref: Wikipedia:Brodmann_area_37 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006479 name: Brodmann (1909) area 38 namespace: uberon def: "Brodmann area 38, also BA38 or temporopolar area 38 (H), is part of the temporal cortex in the human brain. BA 38 is at the anterior end of the temporal lobe, known as the temporal pole. BA38 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the most rostral portions of the superior temporal gyrus and the middle temporal gyrus. Cytoarchitecturally it is bounded caudally by the inferior temporal area 20, the middle temporal area 21, the superior temporal area 22 and the ectorhinal area 36 (Brodmann-1909). Cytoarchitectonic and chemoarchitectonic studies find that it contains at least seven subareas, one of which, TG, is unique to humans. 'The functional significance of this area TG is not known, but it may bind complex, highly processed perceptual inputs to visceral emotional responses.' This area is among the earliest affected by Alzheimer's disease and the earliest involved at the start of temporal lobe seizures." [PMID:22421014, Wikipedia:Brodmann_area_38] synonym: "anterior end of the temporal lobe" EXACT [WikipediaVersioned:Brodmann_area_38&oldid=984922149] synonym: "anterior temporal lobe" EXACT [WikipediaVersioned:Brodmann_area_38&oldid=984922149] synonym: "area 38 of Brodmann" EXACT [FMA:68635] synonym: "area 38 of Brodmann-1909" EXACT [BIRNLEX:1771] synonym: "area temporopolaris" EXACT [BIRNLEX:1771] synonym: "B09-38" BROAD OMO:0003000 [BIRNLEX:1771, NIFSTD:SumsDB_abbrevSource] synonym: "B09-38" EXACT [BIRNLEX:1771] synonym: "BA38" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 38" EXACT [BIRNLEX:1771] synonym: "Brodmann area 38" EXACT [FMA:68635] synonym: "Brodmann area 38, temporopolar" EXACT [BIRNLEX:1771] synonym: "temporal pole" RELATED [WikipediaVersioned:Brodmann_area_38&oldid=984922149] synonym: "temporopolar area 38" EXACT [FMA:68635] synonym: "temporopolar area 38 (H)" EXACT [WikipediaVersioned:Brodmann_area_38&oldid=984922149] xref: BIRNLEX:1771 xref: FMA:68635 xref: neuronames:2412 xref: SCTID:384793008 xref: UMLS:C1272499 {source="BIRNLEX:1771"} xref: Wikipedia:Brodmann_area_38 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006480 name: Brodmann (1909) area 39 namespace: uberon synonym: "angular area 39" EXACT [FMA:68636] synonym: "area 39 of Brodmann" EXACT [FMA:68636] synonym: "area 39 of Brodmann-1909" EXACT [BIRNLEX:1772] synonym: "area angularis" EXACT [BIRNLEX:1772] synonym: "B09-39" BROAD OMO:0003000 [BIRNLEX:1772, NIFSTD:SumsDB_abbrevSource] synonym: "B09-39" EXACT [BIRNLEX:1772] synonym: "BA39" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 39" EXACT [BIRNLEX:1772] synonym: "Brodmann area 39" EXACT [FMA:68636] synonym: "Brodmann area 39, angular" EXACT [BIRNLEX:1772] xref: BIRNLEX:1772 xref: FMA:68636 xref: neuronames:2409 xref: SCTID:384794002 xref: UMLS:C1272500 {source="BIRNLEX:1772"} xref: Wikipedia:Brodmann_area_39 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006481 name: Brodmann (1909) area 44 namespace: uberon def: "Broca's area is a region of the inferior frontal gyrus (in the dominant cerebral hemisphere, usually on the left side) that is composed of parts of Brodmanns' areas 44 and 45." [https://orcid.org/0000-0002-1572-1316] synonym: "area 44 of Brodmann" EXACT [FMA:68641] synonym: "area 44 of Brodmann-1909" EXACT [BIRNLEX:1776] synonym: "area opercularis" EXACT [BIRNLEX:1776] synonym: "B09-44" BROAD OMO:0003000 [BIRNLEX:1776, NIFSTD:SumsDB_abbrevSource] synonym: "B09-44" EXACT [BIRNLEX:1776] synonym: "BA44" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 44" EXACT [BIRNLEX:1776] synonym: "Brodmann area 44" EXACT [FMA:68641] synonym: "Brodmann area 44, opercular" EXACT [BIRNLEX:1776] synonym: "opercular area 44" EXACT [FMA:68641] xref: BIRNLEX:1776 xref: FMA:68641 xref: neuronames:2402 xref: SCTID:384803008 xref: UMLS:C1272509 {source="BIRNLEX:1776"} xref: Wikipedia:Brodmann_area_44 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex property_value: IAO:0000233 "https://github.com/obophenotype/uberon/issues/2917" xsd:anyURI [Term] id: UBERON:0006482 name: Brodmann (1909) area 45 namespace: uberon def: "Part of the cytoarchitecturally defined frontal region of cerebral cortex. In the human, it occupies the triangular part of the inferior frontal gyrus (human) and, surrounding the anterior horizontal limb of the lateral sulcus (human), a portion of the orbital part of the inferior frontal gyrus (human). Bounded caudally by the anterior ascending limb of the lateral sulcus (human), it borders on the insula in the depth of the lateral sulcus. Cytoarchitectonically it is bounded caudally by the opercular area 44, rostrodorsally by the area 46 of Brodmann (human) and ventrally by the area 47 of Brodmann (human) (Brodmann-1909) (Adapted from Brain Info)." [BIRNLEX:1777] synonym: "area 45 of Brodmann" EXACT [FMA:68642] synonym: "area 45 of Brodmann-1909" EXACT [BIRNLEX:1777] synonym: "area triangularis" EXACT OMO:0003011 [BIRNLEX:1777, Wikipedia:Brodmann_area_45] synonym: "B09-45" BROAD OMO:0003000 [BIRNLEX:1777, NIFSTD:SumsDB_abbrevSource] synonym: "B09-45" EXACT [BIRNLEX:1777] synonym: "BA45" BROAD OMO:0003000 [BIRNLEX:1777, NIFSTD:SumsDB_abbrevSource] synonym: "BA45" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 45" EXACT [BIRNLEX:1777] synonym: "Brodmann area 45" EXACT [FMA:68642] synonym: "Brodmann area 45, triangular" EXACT [BIRNLEX:1777] synonym: "triangular area 45" EXACT [FMA:68642] xref: BIRNLEX:1777 xref: FMA:68642 xref: neuronames:2403 xref: SCTID:384805001 xref: UMLS:C1272511 {source="BIRNLEX:1777"} xref: Wikipedia:Brodmann_area_45 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001870 {source="NIFSTD"} ! frontal cortex property_value: UBPROP:0000001 "Brodmann area 45 (BA45), is part of the frontal cortex in the human brain. Situated on the lateral surface, inferior to BA9 and adjacent to BA46. This area is also known as pars triangular (of the inferior frontal gyrus). In the human, it occupies the triangular part of inferior frontal gyrus (H) and, surrounding the anterior horizontal limb of lateral sulcus (H), a portion of the orbital part of inferior frontal gyrus (H). Bounded caudally by the anterior ascending limb of lateral sulcus (H), it borders on the insula in the depth of the lateral sulcus. In terms of cytoarchitecture, it is bounded caudally by the opercular area 44 (BA44), rostrodorsally by the middle frontal area 46 (BA46), and ventrally by the orbital area 47 (BA47) (Brodmann-1909)[Wikipedia:Brodmann_area_45]." xsd:string {source="Wikipedia:Brodmann_area_45"} [Term] id: UBERON:0006483 name: Brodmann (1909) area 46 namespace: uberon def: "Brodmann area 46, or BA46, is part of the frontal cortex in the human brain. It is between BA10 and BA45. BA46 is known as middle frontal area 46. In the human it occupies approximately the middle third of the middle frontal gyrus and the most rostral portion of the inferior frontal gyrus. Brodmann area 46 roughly corresponds with the dorsolateral prefrontal cortex (DLPFC), although the borders of area 46 are based on cytoarchitecture rather than function. The DLPFC also encompasses part of granular frontal area 9, directly adjacent on the dorsal surface of the cortex. Cytoarchitecturally, BA46 is bounded dorsally by the granular frontal area 9, rostroventrally by the frontopolar area 10 and caudally by the triangular area 45 (Brodmann-1909). There is some discrepancy between the extent of BA8 (Brodmann-1905) and the same area as described by Walker (1940)." [Wikipedia:Brodmann_area_46] synonym: "area 46" RELATED [FMA:68643] synonym: "area 46 of Brodmann" EXACT [FMA:68643] synonym: "area 46 of Brodmann-1909" EXACT [BIRNLEX:1778] synonym: "area frontalis media" EXACT [BIRNLEX:1778] synonym: "B09-46" BROAD OMO:0003000 [BIRNLEX:1778, NIFSTD:SumsDB_abbrevSource] synonym: "B09-46" EXACT [BIRNLEX:1778] synonym: "BA46" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 46" EXACT [BIRNLEX:1778] synonym: "Brodmann area 46" EXACT [FMA:68643] synonym: "Brodmann area 46, middle frontal" EXACT [BIRNLEX:1778] synonym: "middle frontal area 46" EXACT [FMA:68643] synonym: "middle frontal area 46" RELATED [Wikipedia:Brodmann_area_46] xref: BIRNLEX:1778 xref: FMA:68643 xref: neuronames:2105 xref: SCTID:384806000 xref: UMLS:C1272512 {source="BIRNLEX:1778"} xref: Wikipedia:Brodmann_area_46 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/c/cd/Brodmann_area_46.png" xsd:anyURI [Term] id: UBERON:0006484 name: Brodmann (1909) area 47 namespace: uberon def: "Brodmann area 47, or BA47, is part of the frontal cortex in the human brain. Curving from the lateral surface of the frontal lobe into the ventral (orbital) frontal cortex. It is below areas BA10 and BA45, and beside BA11. This area is also known as orbital area 47. In the human, on the orbital surface it surrounds the caudal portion of the orbital sulcus (H) from which it extends laterally into the orbital part of inferior frontal gyrus (H). Cytoarchitectonically it is bounded caudally by the triangular area 45, medially by the prefrontal area 11 of Brodmann-1909, and rostrally by the frontopolar area 10 (Brodmann-1909). It incorporates the region that Brodmann identified as 'Area 12' in the monkey, and therefore, following the suggestion of Michael Petrides, some contemporary neuroscientists refer to the region as 'BA47/12. ' BA47 has been implicated in the processing of syntax in spoken and signed languages, and more recently in musical syntax." [Wikipedia:Brodmann_area_47] synonym: "area 47 of Brodmann" EXACT [FMA:68644] synonym: "area 47 of Brodmann-1909" EXACT [BIRNLEX:1779] synonym: "area orbitalis" EXACT OMO:0003011 [BIRNLEX:1779, Wikipedia:Brodmann_area_47] synonym: "B09-47" BROAD OMO:0003000 [BIRNLEX:1779, NIFSTD:SumsDB_abbrevSource] synonym: "B09-47" EXACT [BIRNLEX:1779] synonym: "BA47" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 47" EXACT [BIRNLEX:1779] synonym: "Brodmann area 47" EXACT [FMA:68644] synonym: "Brodmann area 47, orbital" EXACT [BIRNLEX:1779] synonym: "orbital area 47" EXACT [FMA:68644] xref: BIRNLEX:1779 xref: FMA:68644 xref: neuronames:2404 xref: SCTID:384807009 xref: UMLS:C1272513 {source="BIRNLEX:1779"} xref: Wikipedia:Brodmann_area_47 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006485 name: Brodmann (1909) area 48 namespace: uberon def: "Retrosubicular area 48 is a subdivision of the cytoarchitecturally defined hippocampal region of the cerebral cortex. In the human it is located on the medial surface of the temporal lobe. Cytoarchitectually it is bounded rostrally by the perirhinal area 35 and medially by the presubiculum. While described by Brodmann (Brodmann-1909), it was not included in his areal maps of human cortex (Brodmann-1909; Brodmann-1910)." [Wikipedia:Brodmann_area_48] synonym: "area 48 of Brodmann" EXACT [FMA:81151] synonym: "area retrosubicularis" EXACT [BIRNLEX:1791] synonym: "B09-48" BROAD OMO:0003000 [BIRNLEX:1791, NIFSTD:SumsDB_abbrevSource] synonym: "B09-48" EXACT [BIRNLEX:1791] synonym: "BA48" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 48" EXACT [BIRNLEX:1791] synonym: "Brodmann area 48" EXACT [FMA:81151] synonym: "Brodmann area 48, retrosubicular" EXACT [BIRNLEX:1791] synonym: "Brodmann's area 48" EXACT [FMA:81151] synonym: "retrosubicular area 48" EXACT [FMA:81151] xref: BIRNLEX:1791 xref: FMA:81151 xref: neuronames:2116 xref: SCTID:384808004 xref: UMLS:C1272514 {source="BIRNLEX:1791"} xref: Wikipedia:Brodmann_area_48 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006486 name: Brodmann (1909) area 52 namespace: uberon def: "Parainsular area 52 (H) is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Its medial boundary corresponds approximately to the junction between the temporal lobe and the insula. Cytoarchitecturally it is bounded laterally by the anterior transverse temporal area 42 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_52] synonym: "area 52 of Brodmann" EXACT [FMA:81153] synonym: "area parainsularis" EXACT [BIRNLEX:1792] synonym: "B09-52" BROAD OMO:0003000 [BIRNLEX:1792, NIFSTD:SumsDB_abbrevSource] synonym: "B09-52" EXACT [BIRNLEX:1792] synonym: "BA52" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 52" EXACT [BIRNLEX:1792] synonym: "Brodmann area 52" EXACT [FMA:81153] synonym: "Brodmann area 52, parainsular" EXACT [BIRNLEX:1792] synonym: "parainsular area 52" EXACT [FMA:81153] xref: BIRNLEX:1792 xref: FMA:81153 xref: neuronames:2414 xref: SCTID:384809007 xref: UMLS:C1272514 {source="BIRNLEX:1792"} xref: Wikipedia:Brodmann_area_52 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006487 name: Hadjikhani et al. (1998) visuotopic area V2d namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v2d" EXACT [BIRNLEX:4055] synonym: "V2d" BROAD OMO:0003000 [BIRNLEX:4055, NIFSTD:SumsDB_abbrevSource] xref: BIRNLEX:4055 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0006488 name: C3 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the third cervical vertebra in most mammals." [https://github.com/obophenotype/uberon/issues/725, PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C3 segment" EXACT [FMA:71181] synonym: "C3 spinal cord segment" EXACT [BIRNLEX:744] synonym: "third cervical spinal cord segment" EXACT [BIRNLEX:744] xref: BIRNLEX:744 xref: FMA:71181 xref: SCTID:278756003 xref: UMLS:C0457853 {source="BIRNLEX:744"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006489 name: C2 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the second cervical vertebra in most mammals." [https://github.com/obophenotype/uberon/issues/725, PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C2 segment" EXACT [FMA:71180] synonym: "C2 spinal cord segment" EXACT [BIRNLEX:752] synonym: "second cervical spinal cord segment" EXACT [BIRNLEX:752] xref: BIRNLEX:752 xref: FMA:71180 xref: SCTID:278755004 xref: UMLS:C0457852 {source="BIRNLEX:752"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006490 name: C4 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fourth cervical vertebra in most mammals." [https://github.com/obophenotype/uberon/issues/725, PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C4 segment" EXACT [FMA:71182] synonym: "C4 spinal cord segment" EXACT [BIRNLEX:753] synonym: "forth cervical spinal cord segment" EXACT [BIRNLEX:753] xref: BIRNLEX:753 xref: FMA:71182 xref: SCTID:278757007 xref: UMLS:C0457854 {source="BIRNLEX:753"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006491 name: C5 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the fifth cervical vertebra in most mammals." [https://github.com/obophenotype/uberon/issues/725, PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C5 segment" EXACT [FMA:71183] synonym: "C5 spinal cord segment" EXACT [BIRNLEX:760] synonym: "fifth cervical spinal cord segment" EXACT [BIRNLEX:760] xref: BIRNLEX:760 xref: FMA:71183 xref: SCTID:278758002 xref: UMLS:C0457855 {source="BIRNLEX:760"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006492 name: C6 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the sixth cervical vertebra in most mammals." [https://github.com/obophenotype/uberon/issues/725, PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C6 segment" EXACT [FMA:71184] synonym: "C6 spinal cord segment" EXACT [BIRNLEX:766] synonym: "sixth cervical spinal cord segment" EXACT [BIRNLEX:766] xref: BIRNLEX:766 xref: FMA:71184 xref: SCTID:278759005 xref: UMLS:C0457856 {source="BIRNLEX:766"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006493 name: C7 segment of cervical spinal cord namespace: uberon def: "The segment of the spinal cord that corresponds to the seventh cervical vertebra in most mammals." [https://github.com/obophenotype/uberon/issues/725, PMID:19876658] subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "C7 segment" EXACT [FMA:71185] synonym: "C7 spinal cord segment" EXACT [BIRNLEX:773] synonym: "seventh cervical spinal cord segment" EXACT [BIRNLEX:773] xref: BIRNLEX:773 xref: FMA:71185 xref: SCTID:278760000 xref: UMLS:C0457857 {source="BIRNLEX:773"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006514 name: pallidum namespace: uberon def: "Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614] synonym: "neuraxis pallidum" EXACT [FMA:83684] synonym: "pallidum of neuraxis" EXACT [FMA:83684] xref: BAMS:PAL xref: EMAPA:32780 xref: FMA:83684 xref: MA:0000889 xref: MBA:803 xref: MESH:D005917 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2673 is_a: UBERON:0002020 {source="FMA"} ! gray matter is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0002420 {source="MA"} ! basal ganglion property_value: RO:0002171 UBERON:0002435 {source="ABA"} [Term] id: UBERON:0006516 name: dorsal pallidum namespace: uberon def: "The predominant portion of the globus pallidus in the striatopallidal system, which is defined by connectivity and neurochemical staining. The dorsal pallidum is distinguished from the ventral pallidum by a boundary that is partially defined by the anterior commissure. The remainder of the boundary is indistinct in sections stained for Nissl substance ( Heimer-1995 )." [NeuroNames:1604] synonym: "dorsal globus pallidus" RELATED [BTO:0004376] synonym: "globus pallidus dorsal part" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pallidum dorsal region" RELATED [BAMS:PALd] xref: BAMS:PALd xref: BTO:0004376 xref: FMA:77619 xref: MBA:818 xref: neuronames:1604 is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0006514 {source="FMA"} ! pallidum relationship: part_of UBERON:0001875 {source="BTO"} ! globus pallidus [Term] id: UBERON:0006568 name: hypothalamic nucleus namespace: uberon def: "A nucleus of brain that is part of a hypothalamus." [OBOL:automatic] synonym: "nucleus of hypothalamus" EXACT [FMA:258762] xref: BTO:0002449 xref: EMAPA:35417 xref: FMA:258762 xref: MA:0002426 xref: SCTID:279304003 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0006569 name: diencephalic nucleus namespace: uberon def: "A nucleus of brain that is part of a diencephalon." [OBOL:automatic] xref: TAO:0002191 xref: ZFA:0001659 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0006585 name: vestibular organ namespace: uberon def: "An organ that is part of a vestibular system." [OBOL:automatic] synonym: "balance organ" EXACT [https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2519 xref: UMLS:C0682674 {source="BIRNLEX:2519"} relationship: part_of UBERON:0000012 {source="NIFSTD"} ! somatic nervous system [Term] id: UBERON:0006666 name: great cerebral vein namespace: uberon def: "The great cerebral vein is one of the large blood vessels in the skull draining the cerebrum (brain)[WP,unvetted]." [Wikipedia:Great_cerebral_vein] subset: human_reference_atlas synonym: "great cerebral vein" EXACT [FMA:50993] synonym: "great cerebral vein of Galen" EXACT [FMA:50993] synonym: "vein of Galen" EXACT [FMA:50993] xref: EMAPA:19311 xref: FMA:50993 xref: NCIT:C33855 xref: SCTID:244396002 xref: UMLS:C0042448 {source="ncithesaurus:Great_Cerebral_Vein_of_Galen"} xref: Wikipedia:Great_cerebral_vein xref: Wikipedia:Internal_cerebral_veins is_a: UBERON:0001663 ! cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006681 name: interthalamic adhesion namespace: uberon def: "The medial surface of the thalamus constitutes the upper part of the lateral wall of the third ventricle, and is connected to the corresponding surface of the opposite thalamus by a flattened gray band, the Interthalamic adhesion (massa intermedia, middle commissure, gray commissure). In non-human mammals it is a large structure. In humans this mass averages about 1 cm in length in its antero-posterior diameter. It sometimes consists of two parts and occasionally is absent. The interthalamic adhesion is found in 70-80% of humans. It is present more often in females and larger than in males by an average of 53 percent. When absent in development, no noticeable deficit has been observed. It contains nerve cells and nerve fibers; a few of the latter may cross the middle line, but most of them pass toward the middle line and then curve lateralward on the same side." [Wikipedia:Interthalamic_adhesion] synonym: "interthalamic connection" EXACT [FMA:74869] synonym: "middle commissure" EXACT [FMA:74869] xref: BAMS:InTrM xref: BAMS:itha xref: EMAPA:18546 xref: FMA:74869 xref: neuronames:301 xref: Wikipedia:Interthalamic_adhesion is_a: UBERON:0001020 ! nervous system commissure [Term] id: UBERON:0006691 name: tentorium cerebelli namespace: uberon def: "The tentorium cerebelli or cerebellar tentorium is an extension of the dura mater that separates the cerebellum from the inferior portion of the occipital lobes." [Wikipedia:Tentorium_cerebelli] synonym: "cerebellar tentorium" EXACT [FMA:83966] xref: EMAPA:18210 xref: FMA:83966 xref: NCIT:C33749 xref: neuronames:1240 xref: SCTID:244428008 xref: UMLS:C0228121 {source="ncithesaurus:Tentorium_Cerebelli"} xref: VHOG:0001298 xref: Wikipedia:Tentorium_cerebelli relationship: part_of UBERON:0002363 ! dura mater property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/b/b7/Illu_tentorium.jpg" xsd:anyURI property_value: UBPROP:0000001 "The tentorium cerebelli or cerebellar tentorium (Latin: [][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001298", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0006694 name: cerebellum vasculature namespace: uberon def: "A vasculature that is part of a cerebellum." [OBOL:automatic] xref: FMA:268519 is_a: UBERON:0036303 ! vasculature of central nervous system relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0006695 name: mammillary axonal complex namespace: uberon def: "The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain[GO]." [GO:0061373] is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0006696 name: mammillothalamic axonal tract namespace: uberon alt_id: UBERON:0009642 def: "A fiber pathway that originates from neurons in the posterior hypothalamic region and projects to various nuclei of the anterior nuclear group of the thalamus. It is a composite structure that consists of the mammillothalamic tract of the hypothalamus and the mammillothalamic tract of the thalamus (Carpenter-1983). (from Brain Info.org)." [NLXANAT:1010016] comment: The mammillothalamic fasciculus arises from cells in both the medial and lateral nuclei of the mammillary body and by fibers that are directly continued from the fornix. The Mammillothalamic fasciculus then connects the mammillary body to the dorsal tegmental nuclei, the ventral tegmental nuclei, and the anterior thalamic nucleus [WP] synonym: "bundle of vicq d%27azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "bundle of vicq d%e2%80%99azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "fasciculus mammillothalamicus" EXACT OMO:0003011 [FMA:TA] synonym: "fasciculus mammillothalamicus" RELATED OMO:0003011 [Wikipedia:Mammillothalamic_fasciculus] synonym: "mamillo-thalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "mammillo-thalamic fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "mammillo-thalamic tract" RELATED [BAMS:mt] synonym: "mammillothalamic fasciculus" EXACT [FMA:83849] synonym: "mammillothalamic tract" EXACT [FMA:83849] synonym: "mammillothalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "thalamomammillary fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "vicq d'azyr's bundle" EXACT [FMA:83849] xref: BAMS:mt xref: BAMS:mtt xref: DHBA:10586 xref: DMBA:17782 xref: FMA:83849 xref: HBA:9266 xref: neuronames:2438 xref: NLXANAT:1010016 xref: Wikipedia:Mammillothalamic_fasciculus is_a: UBERON:0007702 {source="FMA"} ! tract of brain is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0006695 ! mammillary axonal complex property_value: UBPROP:0000001 "The mammillothalamic tract is the collection of axons that connects the two major subdivisions of the diencephalon (hypothalamus and thalamus) and closes the diencephalic circuit[GO][GO:0061374]." xsd:string {source="GO:0061374"} [Term] id: UBERON:0006697 name: mammillotectal axonal tract namespace: uberon def: "The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus." [GO:0061375] is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0006695 ! mammillary axonal complex [Term] id: UBERON:0006698 name: mammillotegmental axonal tract namespace: uberon alt_id: UBERON:0002725 def: "The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons." [GO:0061376] synonym: "fasciculus mamillotegmentalis" RELATED OMO:0003011 [NeuroNames:423] synonym: "Gudden tract" EXACT [FMA:62058] synonym: "mammillo-tegmental tract" RELATED [NeuroNames:423] synonym: "mammillotegmental fasciculus" EXACT [FMA:62058] synonym: "mammillotegmental tract" EXACT [FMA:62058] synonym: "mammillotegmental tract (Gudden)" RELATED [NeuroNames:423] synonym: "mammillotegmental tract of hypothalamus" EXACT [BIRNLEX:1497] synonym: "medial tegmental tract" RELATED [BAMS:mtg] synonym: "MTG" BROAD OMO:0003000 [BIRNLEX:1497, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus hypothalamicotegmentalis" RELATED OMO:0003011 [NeuroNames:423] synonym: "tractus hypothalamotegmentalis" RELATED OMO:0003011 [NeuroNames:423] synonym: "tractus mamillo-tegmentalis" RELATED OMO:0003011 [NeuroNames:423] synonym: "tractus mammillotegmentalis" RELATED OMO:0003011 [NeuroNames:423] synonym: "von Gudden's tract" EXACT [FMA:62058] xref: BAMS:mtg xref: BIRNLEX:1497 xref: DHBA:12065 xref: DMBA:17781 xref: FMA:62058 xref: HBA:265505178 xref: MBA:681 xref: neuronames:423 {source="BIRNLEX:1497"} xref: SCTID:369140005 xref: UMLS:C0228376 {source="BIRNLEX:1497"} is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region relationship: part_of UBERON:0006695 ! mammillary axonal complex [Term] id: UBERON:0006743 name: paleodentate of dentate nucleus namespace: uberon synonym: "paleodentate of dentate nucleus" EXACT [BIRNLEX:1490] synonym: "paleodentate part of dentate nucleus" EXACT [FMA:72540] synonym: "paleodentate part of the dentate nucleus" RELATED [NeuroNames:685] synonym: "paleodentate portion of dentate nucleus" EXACT [FMA:72540] synonym: "pars paleodentata" RELATED OMO:0003011 [NeuroNames:685] synonym: "PDT" EXACT [BIRNLEX:1490] xref: BAMS:PDt xref: BIRNLEX:1490 xref: FMA:72540 xref: neuronames:685 {source="BIRNLEX:1490"} xref: UMLS:C0175486 {source="BIRNLEX:1490"} is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0006779 name: superficial white layer of superior colliculus namespace: uberon def: "Superficial white matter layer of superior collilculus that consists mainly of axions from the optic nerve." [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris iii" EXACT OMO:0003011 [FMA:71112, FMA:TA] synonym: "lamina III of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer III of superior colliculus" EXACT [FMA:71112] synonym: "optic layer" EXACT [FMA:71112] synonym: "optic layer of superior colliculus" EXACT [FMA:71112] synonym: "optic layer of the superior colliculus" RELATED [BAMS:op] synonym: "stratum opticum colliculi superioris" EXACT OMO:0003011 [FMA:71112, FMA:TA] synonym: "superior colliculus optic layer" RELATED [BAMS:SCop] xref: BAMS:op xref: BAMS:SCop xref: BAMS:SuWh xref: DHBA:12296 xref: FMA:71112 xref: HBA:9122 xref: MBA:851 xref: neuronames:1810 xref: Wikipedia:Superior_colliculus#Neural_circuit is_a: UBERON:0006786 ! white matter of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus property_value: RO:0002171 UBERON:0006120 {source="ABA"} property_value: RO:0002171 UBERON:0006780 {source="ABA"} [Term] id: UBERON:0006780 name: zonal layer of superior colliculus namespace: uberon def: "A thin layer consisting of small myelinated axons together with marginal and horizontal cells." [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris I" EXACT OMO:0003011 [FMA:72406, FMA:TA] synonym: "lamina I of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer I of superior colliculus" EXACT [FMA:72406] synonym: "stratum zonale colliculi superioris" EXACT OMO:0003011 [FMA:72406, FMA:TA] synonym: "stratum zonale of midbrain" EXACT OMO:0003011 [FMA:72406, FMA:TA] synonym: "stratum zonale of superior colliculus" EXACT [FMA:72406] synonym: "superior colliculus zonal layer" RELATED [BAMS:SCzo] synonym: "zonal layer of the superior colliculus" RELATED [BAMS:Zo, BAMS:zo] xref: BAMS:SCzo xref: BAMS:Zo xref: BAMS:zo xref: DHBA:12297 xref: FMA:72406 xref: MBA:834 xref: neuronames:1828 xref: Wikipedia:Superior_colliculus#Neural_circuit is_a: UBERON:0006785 {source="FMA"} ! gray matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus property_value: IAO:0000116 "we follow FMA is making this gray matter, but this needs to be reconciled with the WP-derived definition" xsd:string property_value: RO:0002171 UBERON:0006120 {source="ABA"} property_value: RO:0002171 UBERON:0006779 {source="ABA"} [Term] id: UBERON:0006782 name: stratum lemnisci of superior colliculus namespace: uberon def: "Composite layer of the superior colliculus lying deep to the stratum opticum, that can be further subdivided into fiber and cell rich layers (Brodal, Neurological Anatomy, 2nd ed., 1981, pg 544)." [NLX:144110] synonym: "stratum lemnisci" BROAD [NLX:144110] xref: BAMS:StL xref: FMA:72408 xref: HBA:9116 xref: NLX:144110 is_a: UBERON:0006785 ! gray matter layer of superior colliculus [Term] id: UBERON:0006783 name: layer of superior colliculus namespace: uberon def: "The microstructure of the optic tectum / superior colliculus varies across species. As a general rule, there is always a clear distinction between superficial layers, which receive input primarily from the visual system and show primarily visual responses, and deeper layers, which receive many types of input and project to numerous motor-related brain areas. The distinction between these two zones is so clear and consistent that some anatomists have suggested that they should be considered separate brain structures. In mammals, neuroanatomists conventionally identify seven layers[WP]." [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "cytoarchitectural part of superior colliculus" EXACT [NLXANAT:1005033] synonym: "layer of optic tectum" EXACT SENSU [] synonym: "tectal layer" RELATED SENSU [] xref: BAMS:SC-layers xref: NLXANAT:1005033 xref: Wikipedia:Superior_colliculus#Neural_circuit is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0001945 ! superior colliculus property_value: UBPROP:0000008 "The tectum in lampreys has more layers than the tectum in hagfishes, likely related to the fact that vision is less well developed in hagfishes. tectal lamination is almost identical in reptiles and birds and is more restricted in mammals[http://icb.oxfordjournals.org/content/42/4/743.full]" xsd:string [Term] id: UBERON:0006785 name: gray matter layer of superior colliculus namespace: uberon def: "A central nervous system gray matter layer that is part of a superior colliculus." [OBOL:automatic] synonym: "gray matter of superior colliculus" EXACT [] xref: FMA:77870 is_a: UBERON:0006783 ! layer of superior colliculus is_a: UBERON:0016548 ! central nervous system gray matter layer relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0006786 name: white matter of superior colliculus namespace: uberon def: "A central nervous system white matter layer that is part of a superior colliculus." [OBOL:automatic] synonym: "predominantly white regional part of superior colliculus" EXACT [BIRNLEX:1023] synonym: "white matter layer of superior colliculus" EXACT [FMA:83899] xref: BIRNLEX:1023 xref: FMA:83899 is_a: UBERON:0006783 ! layer of superior colliculus is_a: UBERON:0016549 ! central nervous system white matter layer relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0006787 name: middle white layer of superior colliculus namespace: uberon subset: vertebrate_core synonym: "intermediate white layer" EXACT [FMA:71113] synonym: "intermediate white layer of superior colliculus" EXACT [FMA:71113] synonym: "intermediate white layer of the superior colliculus" RELATED [BAMS:InWh, BAMS:iw] synonym: "lamina colliculi superioris v" EXACT OMO:0003011 [FMA:71113, FMA:TA] synonym: "lamina V of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer V of superior colliculus" EXACT [FMA:71113] synonym: "strata album centrales" RELATED OMO:0003004 [ZFA:0001351] synonym: "stratum album centrale" RELATED [TAO:0001351] synonym: "stratum album intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum medullare intermedium colliculi superioris" EXACT OMO:0003011 [FMA:71113, FMA:TA] synonym: "superior colliculus intermediate white layer" RELATED [BAMS:SCiw] xref: BAMS:InWh xref: BAMS:iw xref: BAMS:MWh xref: BAMS:SCiw xref: DHBA:12300 xref: FMA:71113 xref: HBA:9120 xref: neuronames:2848 xref: TAO:0001351 xref: ZFA:0001351 is_a: UBERON:0006786 ! white matter of superior colliculus is_a: UBERON:0006792 ! intermediate layer of superior colliculus property_value: IAO:0000116 "grouping teleost assuming homology of superior colliculus and optic tectum; however, this is dubious as tectal layers vary so widely. See: http://icb.oxfordjournals.org/content/42/4/743/T1.expansion.html" xsd:string [Term] id: UBERON:0006788 name: middle gray layer of superior colliculus namespace: uberon subset: vertebrate_core synonym: "intermediate gray layer" EXACT [FMA:72409] synonym: "intermediate grey layer of superior colliculus" EXACT [FMA:72409] synonym: "intermediate grey layer of the superior colliculus" RELATED [BAMS:igr] synonym: "lamina colliculi superioris iv" EXACT OMO:0003011 [FMA:72409, FMA:TA] synonym: "lamina IV of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer IV of superior colliculus" EXACT [FMA:72409] synonym: "stratum griseum centrale" RELATED [TAO:0001350] synonym: "stratum griseum intermediale" EXACT OMO:0003011 [FMA:72409, FMA:TA] synonym: "stratum griseum intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum griseum intermedium colliculi superioris" EXACT OMO:0003011 [FMA:72409, FMA:TA] synonym: "stratum griseum mediale" EXACT OMO:0003011 [FMA:72409, FMA:TA] xref: BAMS:igr xref: BAMS:MGr xref: DHBA:12299 xref: FMA:72409 xref: HBA:9119 xref: neuronames:2847 xref: TAO:0001350 xref: ZFA:0001350 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006792 ! intermediate layer of superior colliculus property_value: IAO:0000116 "grouping teleost assuming homology of superior colliculus and optic tectum; however, this is dubious as tectal layers vary so widely. See: http://icb.oxfordjournals.org/content/42/4/743/T1.expansion.html" xsd:string [Term] id: UBERON:0006789 name: deep gray layer of superior colliculus namespace: uberon synonym: "deep gray layer of the superior colliculus" RELATED [BAMS:DpG] synonym: "deep grey layer of superior colliculus" EXACT [FMA:72410] synonym: "deep grey layer of the superior colliculus" RELATED [BAMS:dgr] synonym: "lamina colliculi superioris vi" EXACT OMO:0003011 [FMA:72410, FMA:TA] synonym: "lamina VI of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer VI of superior colliculus" EXACT [FMA:72410] synonym: "stratum griseum profundum" EXACT OMO:0003011 [FMA:72410, FMA:TA] synonym: "stratum griseum profundum colliculi superioris" EXACT OMO:0003011 [FMA:72410, FMA:TA] synonym: "stratum griseum profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "superior colliculus deep gray layer" RELATED [BAMS:SCdg] synonym: "superior colliculus intermediate deep gray layer" RELATED [BAMS:SCdg] xref: BAMS:dgr xref: BAMS:DpG xref: BAMS:SCdg xref: DHBA:12302 xref: FMA:72410 xref: HBA:9117 xref: neuronames:2849 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006793 ! deep layer of superior colliculus [Term] id: UBERON:0006790 name: deep white layer of superior colliculus namespace: uberon def: "Deep white matter layer of superior collilculus that consists entirely of fibers." [Wikipedia:Superior_colliculus#Neural_circuit] subset: vertebrate_core synonym: "deep white layer of the superior colliculus" RELATED [BAMS:DpWh, BAMS:dw] synonym: "deep white zone" RELATED [TAO:0000494] synonym: "deep white zones" RELATED OMO:0003004 [ZFA:0000494] synonym: "lamina colliculi superioris vii" EXACT OMO:0003011 [FMA:72416, FMA:TA] synonym: "lamina VII of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer VII of superior colliculus" EXACT [FMA:72416] synonym: "stratum album profundum" EXACT OMO:0003011 [FMA:72416, FMA:TA] synonym: "stratum album profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum medullare profundum colliculi superioris" EXACT OMO:0003011 [FMA:72416, FMA:TA] synonym: "superior colliculus deep white layer" RELATED [BAMS:SCdw] synonym: "superior colliculus intermediate deep white layer" RELATED [BAMS:SCdw] xref: BAMS:DpWh xref: BAMS:dw xref: BAMS:SCdw xref: DHBA:12303 xref: FMA:72416 xref: HBA:9118 xref: neuronames:2850 xref: TAO:0000494 xref: Wikipedia:Superior_colliculus#Neural_circuit xref: ZFA:0000494 is_a: UBERON:0006786 ! white matter of superior colliculus is_a: UBERON:0006793 ! deep layer of superior colliculus property_value: IAO:0000116 "grouping teleost assuming homology of superior colliculus and optic tectum; however, this is dubious as tectal layers vary so widely. See: http://icb.oxfordjournals.org/content/42/4/743/T1.expansion.html" xsd:string [Term] id: UBERON:0006791 name: superficial layer of superior colliculus namespace: uberon def: "The outermost layer of the superior colliculus." [http://orcid.org/0000-0002-6601-2165] synonym: "superficial gray and white zone" EXACT [ZFA:0000686] synonym: "superficial grey and white zone" RELATED [TAO:0000686] synonym: "superficial grey and white zones" RELATED OMO:0003004 [TAO:0000686] synonym: "superior colliculus, superficial layer" RELATED [BAMS:SCS] xref: BM:MB-Tec-SCS xref: DHBA:12293 xref: TAO:0000686 xref: ZFA:0000686 is_a: UBERON:0006783 ! layer of superior colliculus property_value: IAO:0000116 "grouping teleost assuming homology of superior colliculus and optic tectum; however, this is dubious as tectal layers vary so widely. See: http://icb.oxfordjournals.org/content/42/4/743/T1.expansion.html" xsd:string [Term] id: UBERON:0006792 name: intermediate layer of superior colliculus namespace: uberon def: "A layer of superior colliculus that lies between the superficial layer and the deep layer." [http://orcid.org/0000-0002-6601-2165] synonym: "central zone" RELATED [TAO:0000327] synonym: "central zone of the optic tectum" EXACT [ZFA:0000327] synonym: "superior colliculus, central layer" RELATED [] synonym: "superior colliculus, intermediate layer" RELATED [BAMS:SCI] xref: BAMS:SCI xref: BM:MB-Tec-SCI xref: DHBA:12298 xref: TAO:0000327 xref: ZFA:0000327 is_a: UBERON:0006783 ! layer of superior colliculus property_value: IAO:0000116 "grouping teleost assuming homology of superior colliculus and optic tectum; however, this is dubious as tectal layers vary so widely. See: http://icb.oxfordjournals.org/content/42/4/743/T1.expansion.html" xsd:string [Term] id: UBERON:0006793 name: deep layer of superior colliculus namespace: uberon def: "The innermost layer of the superior colliculus." [http://orcid.org/0000-0002-6601-2165] synonym: "superior colliculus, deep layer" RELATED [BAMS:SCD] xref: BAMS:SCD xref: BM:MB-Tec-SCD xref: DHBA:12301 is_a: UBERON:0006783 ! layer of superior colliculus property_value: IAO:0000116 "grouping teleost assuming homology of superior colliculus and optic tectum; however, this is dubious as tectal layers vary so widely. See: http://icb.oxfordjournals.org/content/42/4/743/T1.expansion.html" xsd:string [Term] id: UBERON:0006794 name: visual processing part of nervous system namespace: uberon comment: This grouping class is primarily to accommodate GO subset: grouping_class synonym: "optic lobe" RELATED [GAID:1233] xref: GAID:1233 relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0006795 name: arthropod optic lobe namespace: uberon def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5] synonym: "optic lobe" RELATED SENSU [FBbt:00003701] xref: FBbt:00003701 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0006796 name: cephalopod optic lobe namespace: uberon def: "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) ." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587] synonym: "optic lobe" RELATED SENSU [] is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0006798 name: efferent nerve namespace: uberon def: "A nerve that transmits nerve impulses from the central nervous system to effectors such as muscles or glands." [UBERON:cjm] synonym: "motor nerve" RELATED [] synonym: "nervus efferente" EXACT OMO:0003011 [] synonym: "nervus motorius" RELATED OMO:0003011 [FMA:5867] synonym: "neurofibrae efferentes" RELATED OMO:0003011 [] xref: AEO:0000202 xref: EHDAA2:0003231 xref: FMA:5867 xref: Wikipedia:Efferent_nerve_fiber is_a: UBERON:0001021 ! nerve property_value: UBPROP:0000202 FMA:76571 [Term] id: UBERON:0006838 name: ventral ramus of spinal nerve namespace: uberon def: "Branch of spinal nerve that innervates the hypaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] subset: human_reference_atlas synonym: "anterior branch of spinal nerve" RELATED [FMA:5982] synonym: "anterior primary ramus of spinal nerve" EXACT [FMA:5982] synonym: "anterior ramus of spinal nerve" EXACT [FMA:5982] synonym: "ramus anterior" BROAD [FMA:5982] synonym: "ramus anterior nervi spinalis" RELATED OMO:0003011 [Wikipedia:Anterior_ramus_of_spinal_nerve] synonym: "ventral ramus" BROAD [] synonym: "ventral ramus of spinal nerve" EXACT [FMA:5982] xref: FMA:5982 xref: Wikipedia:Anterior_ramus_of_spinal_nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0005476 ! spinal nerve trunk property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006839 name: dorsal ramus of spinal nerve namespace: uberon def: "Branch of spinal nerve that innervates the epaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] subset: human_reference_atlas synonym: "dorsal ramus" BROAD [FMA:5983] synonym: "posterior branch of spinal nerve" RELATED [FMA:5983] synonym: "posterior primary ramus" EXACT [FMA:5983] synonym: "posterior ramus of spinal nerve" EXACT [FMA:5983] synonym: "ramus posterior" BROAD [FMA:5983] synonym: "ramus posterior nervi spinalis" EXACT OMO:0003011 [Wikipedia:Posterior_ramus_of_spinal_nerve] xref: FMA:5983 xref: Wikipedia:Posterior_ramus_of_spinal_nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0005476 ! spinal nerve trunk property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006840 name: nucleus of lateral lemniscus namespace: uberon def: "Groups of cells situated largely within the fiber bundles of the lateral lemniscus. Two nuclei are usually distinguished: a ventral group and a dorsal group (Brodal, Neurological Anatomy, 3rd ed., 1981, pg. 619)." [NLX:69745] subset: vertebrate_core synonym: "lateral lemniscus nuclei" EXACT [ZFA:0000380] synonym: "lateral lemniscus nucleus" EXACT [TAO:0000380] synonym: "nuclei lemnisci lateralis" EXACT OMO:0003011 [FMA:84025, FMA:TA] synonym: "nuclei of lateral lemniscus" RELATED [FMA:84025] synonym: "nucleus of the lateral lemniscus" RELATED [BAMS:NLL] synonym: "set of nuclei of lateral lemniscus" RELATED [FMA:84025] xref: BAMS:NLL xref: DHBA:12454 xref: EV:0100265 xref: FMA:84025 xref: MBA:612 xref: neuronames:1158 xref: NLX:69745 xref: SCTID:369023003 xref: TAO:0000380 xref: ZFA:0000380 is_a: UBERON:0002308 ! nucleus of brain property_value: RO:0002171 UBERON:0002128 {source="ABA"} property_value: RO:0002171 UBERON:0002597 {source="ABA"} property_value: RO:0002171 UBERON:0007634 {source="ABA"} property_value: UBPROP:0000012 "not clear if the ZFA class denotes the same entity; check relationship to midbrain tegmentum - this leads to inconsistency with ABA. The FMA class should represnet the grouping, but there is no FMA class for the singular at the moment" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0006843 name: root of cranial nerve namespace: uberon def: "The initial segment of a cranial nerve, leaving the central nervous system." [http://orcid.org/0000-0002-6601-2165] subset: vertebrate_core synonym: "cranial nerve root" EXACT [FMA:52609] synonym: "cranial neural root" EXACT [FMA:52609] xref: FMA:52609 xref: SCTID:280161004 xref: TAO:0002190 xref: ZFA:0001663 is_a: UBERON:0002211 ! nerve root is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001017 ! central nervous system property_value: IAO:0000116 "recommend asserting under this class rather than relying on inference, as relations may change" xsd:string [Term] id: UBERON:0006847 name: cerebellar commissure namespace: uberon def: "A nervous system commissure that connects a left hemisphere of cerebellum and connects a right hemisphere of cerebellum." [OBOL:automatic] subset: vertebrate_core synonym: "commissura cerebelli" EXACT [ZFA:0000490] synonym: "commissure of cerebellum" EXACT [] xref: BAMS:cbc xref: DMBA:17754 xref: FMA:77522 xref: MBA:744 xref: neuronames:1752 xref: TAO:0000490 xref: ZFA:0000490 is_a: UBERON:0001020 ! nervous system commissure relationship: part_of UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0006848 name: posterior pretectal nucleus namespace: uberon xref: BAMS:PPT xref: BAMS:PTP xref: EMAPA:37922 {source="MA:th"} xref: FMA:84355 xref: MBA:1061 xref: neuronames:1865 is_a: UBERON:0006569 ! diencephalic nucleus property_value: RO:0002171 UBERON:0002565 {source="ABA"} property_value: RO:0002171 UBERON:0002711 {source="ABA"} property_value: RO:0002171 UBERON:0002996 {source="ABA"} [Term] id: UBERON:0006932 name: vestibular epithelium namespace: uberon def: "An epithelium that is part of a vestibular labyrinth." [OBOL:automatic] synonym: "epithelium of vestibular labyrinth" EXACT [OBOL:automatic] synonym: "inner ear vestibular component epithelium" EXACT [RETIRED_EHDAA2:0000834] synonym: "vestibular sensory epithelium" EXACT [FMA:75606] xref: BTO:0005581 xref: EMAPA:32884 xref: EMAPA:35921 xref: FMA:75606 xref: MA:0002892 xref: RETIRED_EHDAA2:0000834 is_a: UBERON:0006934 ! sensory epithelium [Term] id: UBERON:0006934 name: sensory epithelium namespace: uberon def: "Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue." [BTO:0000314] synonym: "neuroepithelium" RELATED INCONSISTENT [BTO:0000314] xref: CALOHA:TS-0682 xref: FMA:62410 xref: SCTID:309045006 relationship: part_of UBERON:0000010 ! peripheral nervous system property_value: UBPROP:0000012 "note that the definition sourced from Dorlands say 'simple columnar', but FMA says atypical" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0006935 name: crista ampullaris neuroepithelium namespace: uberon def: "An epithelium that is part of a crista ampullaris." [OBOL:automatic] subset: pheno_slim synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636] xref: FMA:75636 xref: MA:0002870 is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium [Term] id: UBERON:0006964 name: pars distalis of adenohypophysis namespace: uberon def: "The distal part of adenohypophysis: the part that makes up the main body of the gland." [Dorlands_Medical_Dictionary:MerckSource, Wikipedia:Pars_distalis] subset: vertebrate_core synonym: "anterior lobe" RELATED [MA:0000854] synonym: "DHP" BROAD OMO:0003000 [BIRNLEX:1022, NIFSTD:NeuroNames_abbrevSource] synonym: "distal part of hypophysis" EXACT [BIRNLEX:1022] synonym: "distal part of the hypophysis" RELATED [NeuroNames:410] synonym: "pars anterior" BROAD [EHDAA2:0001416, MA:0000854, ZFA:0001195] synonym: "pars anterior of adenohypophysis" EXACT [FMA:74630] synonym: "pars distalis" RELATED [MA:0000854] synonym: "pars distalis (glandula pituitaria)" EXACT OMO:0003011 [FMA:74630, FMA:TA] synonym: "pars distalis (hypophysis)" RELATED OMO:0003011 [NeuroNames:410] synonym: "pars distalis adenohypophyseos" RELATED [BTO:0001787] synonym: "pars distalis adenohypophysis" EXACT OMO:0003011 [FMA:74630, FMA:TA] synonym: "pars distalis lobi anterioris hypophyseos" RELATED [BTO:0001787] synonym: "pars distalis of anterior lobe of pituitary gland" EXACT [FMA:74630] synonym: "pars glandularis" RELATED [MA:0000854] synonym: "pars glandularis of adenohypophysis" EXACT [FMA:74630] xref: AAO:0010542 xref: BAMS:DHP xref: BIRNLEX:1022 xref: BTO:0001787 xref: EHDAA2:0001416 xref: EHDAA:7532 xref: EMAPA:17515 xref: FMA:74630 xref: MA:0000854 xref: neuronames:410 {source="BIRNLEX:1022"} xref: TAO:0001195 xref: UMLS:C0175322 {source="BIRNLEX:1022"} xref: VHOG:0000244 xref: Wikipedia:Pars_distalis xref: ZFA:0001195 relationship: part_of UBERON:0002196 {source="MA"} ! adenohypophysis property_value: UBPROP:0000001 "Region of the adenohypophysis which produces the follicle-stimulating hormone, luteinizing hormone, prolactin, thyrotropin, and adrenocorticotropin.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010542", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The anterior part of the adenohypophysis. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000244", ontology="VHOG", source="http://bgee.unil.ch/", source="http://www.thefreedictionary.com/pars+anterior"} property_value: UBPROP:0000003 "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000244", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/"} [Term] id: UBERON:0007134 name: trunk ganglion namespace: uberon def: "Ganglion which is located in the trunk." [ZFIN:curator] subset: efo_slim synonym: "body ganglion" EXACT [MAT:0000344] synonym: "trunk ganglia" EXACT OMO:0003004 [ZFA:0001573] xref: EFO:0000901 xref: MAT:0000344 xref: MIAA:0000344 xref: TAO:0001573 xref: ZFA:0001573 is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0007152 name: inferior sagittal sinus namespace: uberon def: "An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly." [ncithesaurus:Inferior_Sagittal_Sinus] subset: human_reference_atlas xref: EMAPA:18635 xref: FMA:50768 xref: NCIT:C12514 xref: SCTID:279260007 xref: UMLS:C0226861 {source="ncithesaurus:Inferior_Sagittal_Sinus"} xref: Wikipedia:Inferior_sagittal_sinus is_a: UBERON:0015704 ! sagittal sinus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007160 name: inferior petrosal sinus namespace: uberon def: "The inferior petrosal sinus, within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head downward. It drains from the cavernous sinus (beneath the brain) to the sigmoid sinuses above the internal jugular vein." [Wikipedia:Inferior_petrosal_sinus] subset: human_reference_atlas synonym: "sinus petrosal inferior" EXACT [FMA:50770] xref: EMAPA:19234 xref: FMA:50770 xref: SCTID:279263009 xref: Wikipedia:Inferior_petrosal_sinus is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007190 name: paracentral gyrus namespace: uberon xref: neuronames:1341 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0007191 name: anterior paracentral gyrus namespace: uberon xref: BTO:0005602 xref: FMA:77537 xref: neuronames:1342 is_a: UBERON:0007190 ! paracentral gyrus [Term] id: UBERON:0007192 name: posterior paracentral gyrus namespace: uberon xref: BTO:0005603 xref: FMA:77538 xref: neuronames:1343 is_a: UBERON:0007190 ! paracentral gyrus [Term] id: UBERON:0007193 name: orbital gyrus namespace: uberon def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus. These are named, from their position, the medial, anterior, lateral, and posterior orbital gyri. The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract; the portion medial to this is named the straight gyrus, and is continuous with the superior frontal gyrus on the medial surface." [Wikipedia:Orbital_gyri] synonym: "gyrus orbitales" RELATED OMO:0003011 [Wikipedia:Orbital_gyri] synonym: "orbital gyri" EXACT OMO:0003004 [Wikipedia:Orbital_gyri] xref: BAMS:OrG xref: FMA:256194 xref: neuronames:91 xref: SCTID:280372002 xref: Wikipedia:Orbital_gyri is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0016525 ! frontal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI [Term] id: UBERON:0007224 name: medial entorhinal cortex namespace: uberon def: "One of two subdivisions of the entorhinal cortex, located medially." [NeuroNames:1113, UBERON:cjm] comment: Connectivity notes: The medial entorhinal cortex preferentially connects with the postrhinal cortex, the presubiculum, visual association (occipital) and retrosplenial cortices[http://www.scholarpedia.org/article/Entorhinal_cortex] synonym: "entorhinal area, medial part" EXACT [] synonym: "MEC" BROAD OMO:0003000 [http://www.scholarpedia.org/article/Entorhinal_cortex] xref: BAMS:MEnt xref: BTO:0004346 xref: DHBA:10319 xref: EMAPA:35545 xref: MA:0000922 xref: neuronames:1113 xref: PBA:128011936 relationship: part_of UBERON:0002728 ! entorhinal cortex relationship: part_of UBERON:0002895 ! secondary olfactory cortex [Term] id: UBERON:0007225 name: lateral entorhinal cortex namespace: uberon def: "One of two subdivisions of the entorhinal cortex, located laterally." [NeuroNames:1113, UBERON:cjm] comment: Connectivity notes: The lateral entorhinal cortex, for example, is strongly connected to the perirhinal cortex, olfactory and insular cortex and the amygdala.[http://www.scholarpedia.org/article/Entorhinal_cortex] synonym: "entorhinal area, lateral part" EXACT [ABA:ENTl] synonym: "entorhinal cortex lateral part" RELATED [BAMS:ENTl] synonym: "LEC" BROAD OMO:0003000 [http://www.scholarpedia.org/article/Entorhinal_cortex] xref: BAMS:ENTl xref: BAMS:LEnt xref: BTO:0004347 xref: DHBA:10318 xref: EMAPA:35477 xref: MA:0000911 xref: MBA:918 xref: neuronames:1883 xref: PBA:128011876 relationship: part_of UBERON:0002022 {source="MA"} ! insula relationship: part_of UBERON:0002728 ! entorhinal cortex relationship: part_of UBERON:0002895 {source="MA"} ! secondary olfactory cortex [Term] id: UBERON:0007227 name: superior vestibular nucleus namespace: uberon def: "The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus." [Wikipedia:Superior_vestibular_nucleus] synonym: "Bechterew's nucleus" RELATED [Wikipedia:Superior_vestibular_nucleus] synonym: "Bekhterevs nucleus" RELATED [BTO:0004372] synonym: "nucleus of Bechterew" EXACT [FMA:54617] synonym: "nucleus vestibularis superior" RELATED OMO:0003011 [Wikipedia:Superior_vestibular_nucleus] xref: BAMS:SUV xref: BAMS:SuVe xref: BAMS:SVN xref: BM:Me-VS-VSS xref: BTO:0004372 xref: CALOHA:TS-2079 xref: DHBA:12452 xref: EV:0100257 xref: FMA:54617 xref: HBA:9701 xref: MBA:217 xref: NCIT:C33703 xref: neuronames:715 xref: UMLS:C0228757 {source="ncithesaurus:Superior_Vestibular_Nucleus"} xref: Wikipedia:Superior_vestibular_nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png" xsd:anyURI property_value: RO:0002171 UBERON:0001721 {source="ABA"} property_value: RO:0002171 UBERON:0001722 {source="ABA"} property_value: RO:0002171 UBERON:0007230 {source="ABA"} [Term] id: UBERON:0007228 name: vestibular nucleus namespace: uberon def: "A cranial nucleus for the vestibular nerve. [WP,unvetted]." [http://www.sciencedirect.com/science/article/pii/S0079612305510069, https://github.com/geneontology/go-ontology/issues/9028, Wikipedia:Vestibular_nuclei] comment: See comments for 'vestibular nuclear complex. subset: human_reference_atlas synonym: "vestibular nucleus of acoustic nerve" EXACT [FMA:54602] synonym: "vestibular nucleus of eighth cranial nerve" EXACT [FMA:54602] synonym: "vestibular VIII nucleus" EXACT [MA:0001032] xref: CALOHA:TS-2078 xref: EMAPA:35923 xref: FMA:54602 xref: MA:0001032 xref: NCIT:C12821 xref: SCTID:362462004 xref: UMLS:C0042600 {source="ncithesaurus:Vestibular_Nucleus"} xref: Wikipedia:Vestibular_nuclei is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002673 ! vestibular nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007230 name: lateral vestibular nucleus namespace: uberon def: "One of the nuclei comprising the vestibular nuclear complex. In some mammals, e.g., primates, it is further subdivided into subnuclei. It therefore differs in appearance and topology in different mammals." [NLX:144002] synonym: "Deiter's nucleus" EXACT [FMA:54614] synonym: "Deiters nucleus" RELATED [BTO:0004370] synonym: "Deiters' nucleus" EXACT [FMA:54614] synonym: "lateral nucleus of Deiters" EXACT [FMA:54614] synonym: "nucleus of Deiters" EXACT [FMA:54614] synonym: "nucleus vestibularis lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_vestibular_nucleus] xref: BAMS:LAV xref: BAMS:LVe xref: BAMS:LVN xref: BM:Me-VS-VSL xref: BTO:0004370 xref: DHBA:12449 xref: EMAPA:36643 xref: FMA:54614 xref: GAID:603 xref: HBA:9699 xref: MBA:209 xref: MESH:D003689 xref: NCIT:C32951 xref: neuronames:716 xref: NLX:144002 xref: SCTID:280176007 xref: UMLS:C0011193 {source="ncithesaurus:Lateral_Vestibular_Nucleus"} xref: Wikipedia:Lateral_vestibular_nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png" xsd:anyURI property_value: RO:0002171 UBERON:0001721 {source="ABA"} property_value: RO:0002171 UBERON:0001722 {source="ABA"} property_value: RO:0002171 UBERON:0007227 {source="ABA"} [Term] id: UBERON:0007244 name: inferior olivary nucleus namespace: uberon def: "The inferior olivary nucleus is the largest nucleus situated in the olivary body, part of the medulla oblongata." [Wikipedia:Inferior_olivary_nucleus] synonym: "inferior olive" RELATED [Wikipedia:Inferior_olivary_nucleus] xref: BTO:0003844 xref: CALOHA:TS-2383 xref: EMAPA:19241 xref: SCTID:369066005 xref: VHOG:0001380 xref: Wikipedia:Inferior_olivary_nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002127 ! inferior olivary complex [Term] id: UBERON:0007245 name: nuclear complex of neuraxis namespace: uberon def: "Gray matter of the central nervous system which is a collection of clustered nuclei." [http://orcid.org/0000-0002-6601-2165] synonym: "cluster of neural nuclei" RELATED [] synonym: "neural nuclei" RELATED [] synonym: "nuclear complex" RELATED [] xref: FMA:256381 xref: FMA:84059 is_a: UBERON:0002020 ! gray matter [Term] id: UBERON:0007247 name: nucleus of superior olivary complex namespace: uberon def: "Any of the nuclei that comprise the superior olivary complex (superior olive). This includes both the primary nuclei such as the lateral and medial nuclei, as well as periolivary nuclei." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class subset: pheno_slim synonym: "superior olivary complex nucleus" EXACT [FMA:72246] xref: FMA:72246 xref: SCTID:369024009 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002128 ! superior olivary complex property_value: IAO:0000232 "this class exists largely for consistency with the FMA. It is defined trivially with respect to the SOC. The class may be removed in future." xsd:string [Term] id: UBERON:0007249 name: dorsal accessory inferior olivary nucleus namespace: uberon alt_id: UBERON:0014288 def: "The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Olivary_body#Olivary_nuclei] synonym: "DAO" EXACT OMO:0003000 [NLXANAT:100310] synonym: "dorsal accessory olivary nucleus" EXACT [FMA:72593] synonym: "dorsal accessory olive" EXACT [NLXANAT:100310] synonym: "inferior olivary complex dorsalaccessory nucleus" RELATED [BAMS:IOda] synonym: "inferior olivary complex, dorsal accessory olive" EXACT [FMA:72593] synonym: "inferior olive dorsal nucleus" RELATED [BAMS:IOD] synonym: "inferior olive, dorsal nucleus" EXACT [FMA:72593] synonym: "nucleus olivaris accessorius posterior" EXACT OMO:0003011 [FMA:72593, FMA:TA] synonym: "posterior accessory olivary nucleus" EXACT [FMA:72593] xref: BAMS:DIO xref: BAMS:IOD xref: BAMS:IOda xref: DHBA:12603 xref: FMA:72593 xref: HBA:9562 xref: neuronames:750 xref: NLXANAT:100310 xref: SCTID:369068006 xref: Wikipedia:Olivary_body#Olivary_nuclei is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0007251 name: preoptic nucleus namespace: uberon def: "A nucleus of brain that is part of a preoptic area." [OBOL:automatic] xref: CALOHA:TS-0822 xref: EV:0100226 xref: MESH:D011301 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: RO:0002175 NCBITaxon:117569 {source="Hardisty, p. 320-1"} [Term] id: UBERON:0007274 name: crista of ampulla of anterior semicircular duct of membranous laybrinth namespace: uberon def: "A crista ampullaris neuroepithelium that is part of a anterior semicircular duct." [OBOL:automatic] subset: vertebrate_core synonym: "AC" RELATED [TAO:0000619] synonym: "anterior crista" RELATED [TAO:0000619] synonym: "anterior crista ampullaris" EXACT [ZFA:0000619] synonym: "anterior cristae" EXACT OMO:0003004 [ZFA:0000619] synonym: "anterior semicircular canal sensory patch" EXACT [ZFA:0000619] synonym: "anterior semicircular canal sensory patches" EXACT OMO:0003004 [ZFA:0000619] synonym: "rostral crista" EXACT [ZFA:0000619] synonym: "sensory patches" RELATED [TAO:0000619] xref: FMA:75610 xref: TAO:0000619 xref: XAO:0004137 xref: ZFA:0000619 is_a: UBERON:0006935 ! crista ampullaris neuroepithelium property_value: IAO:0000116 "TODO - unvetted" xsd:string property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000619", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0007275 name: crista of ampulla of posterior semicircular duct of membranous laybrinth namespace: uberon def: "A crista ampullaris neuroepithelium that is part of a posterior semicircular duct." [OBOL:automatic] subset: vertebrate_core synonym: "caudal crista" EXACT [ZFA:0000566] synonym: "PC" RELATED [TAO:0000566] synonym: "posterior crista" RELATED [TAO:0000566] synonym: "posterior crista ampullaris" EXACT [ZFA:0000566] synonym: "posterior cristae" EXACT OMO:0003004 [ZFA:0000566] synonym: "posterior semicircular canal sensory patch" EXACT [ZFA:0000566] synonym: "posterior semicircular canal sensory patches" EXACT OMO:0003004 [ZFA:0000566] synonym: "sensory patches" RELATED [TAO:0000566] xref: FMA:75611 xref: TAO:0000566 xref: XAO:0004133 xref: ZFA:0000566 is_a: UBERON:0006935 ! crista ampullaris neuroepithelium property_value: IAO:0000116 "TODO - unvetted" xsd:string property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000566", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0007276 name: crista of ampulla of lateral semicircular duct of membranous laybrinth namespace: uberon def: "A crista ampullaris neuroepithelium that is part of a lateral semicircular duct." [OBOL:automatic] subset: vertebrate_core synonym: "lateral crista" RELATED [TAO:0000166] synonym: "lateral crista ampullaris" EXACT [ZFA:0000166] synonym: "lateral cristae" EXACT OMO:0003004 [ZFA:0000166] synonym: "lateral semicircular canal sensory patch" EXACT [ZFA:0000166] synonym: "lateral semicircular canal sensory patches" EXACT OMO:0003004 [ZFA:0000166] synonym: "LC" RELATED [TAO:0000166] synonym: "sensory patches" RELATED [TAO:0000166] xref: FMA:75612 xref: TAO:0000166 xref: ZFA:0000166 is_a: UBERON:0006935 ! crista ampullaris neuroepithelium property_value: IAO:0000116 "TODO - unvetted" xsd:string property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000166", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0007299 name: choroid plexus of tectal ventricle namespace: uberon def: "A choroid plexus that is part of a cerebral aqueduct." [OBOL:automatic] synonym: "choroid plexus tectal ventricle" EXACT [ZFA:0001445] synonym: "choroid plexus tectal ventricles" RELATED OMO:0003004 [ZFA:0001445] xref: TAO:0001445 xref: ZFA:0001445 is_a: UBERON:0001886 ! choroid plexus relationship: part_of UBERON:0002289 ! midbrain cerebral aqueduct [Term] id: UBERON:0007334 name: nidopallium namespace: uberon def: "The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks." [Wikipedia:Avian_Brain_Nomenclature_Consortium, Wikipedia:Nidopallium] synonym: "nested pallium" RELATED [BTO:0003389] xref: BTO:0003389 xref: Wikipedia:Nidopallium is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: UBPROP:0000013 "The region was renamed from neostriatum to nidopallium in 2002 during the Avian Brain Nomenclature Consortium because the prior name suggested that the region was used for more primitive functions" xsd:string [Term] id: UBERON:0007347 name: hyperpallium namespace: uberon def: "A pallial structure unique to avians." [Wikipedia:Hyperpallium] synonym: "hyperstriatum" RELATED [BTO:0003400, Wikipedia:Hyperpallium] xref: BTO:0003400 xref: Wikipedia:Hyperpallium is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0007349 name: mesopallium namespace: uberon synonym: "middle pallium" RELATED [BTO:0003405] xref: BTO:0003405 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0007350 name: arcopallium namespace: uberon def: "A pallial region found in avias that partially overlap regions homologous to the amygdala of mammals." [Wikipedia:Arcopallium] synonym: "amygdaloid complex" RELATED [] synonym: "arched pallium" RELATED [BTO:0003408] synonym: "archistriatum" RELATED [BM:ARCO, http://www.avianbrain.org/archistriatum.html] synonym: "epistriatum" RELATED [] xref: BM:ARCO xref: BTO:0003408 xref: Wikipedia:Arcopallium is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: UBPROP:0000008 "The arcopallium refers to regions of the avian brain which partially overlap regions homologous to the amygdala of mammals. These regions have formerly been referred to as archistriatum, and before this epistriatum or amygdaloid complex, and a recent change of nomenclature has divided the region into the arcopallium and posterior pallial amygdala. The new nomenclature, adopted in 2004, reflects a modern understanding that the avian brain is broadly similar to the mammalian brain, containing large regions homologous to the mammalian neocortex, claustrum, and pallial amygdala. The outdated nomenclature it replaced perceived the avian brain as consisting almost entirely of enlarged basal ganglia, to which more complex outer layers had been added during a progress toward mammalian intelligence. [Wikipedia:Arcopallium]" xsd:string [Term] id: UBERON:0007351 name: nucleus isthmo-opticus namespace: uberon synonym: "nucleus isthmoopticus" RELATED [BTO:0003411] xref: BTO:0003411 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0007412 name: midbrain raphe nuclei namespace: uberon def: "Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe." [BIRNLEX:1676] synonym: "midbrain raphe" EXACT [BIRNLEX:1676] synonym: "midbrain raphe nuclei" EXACT [BIRNLEX:1676] synonym: "nuclei raphes tegmenti mesencephali" EXACT OMO:0003011 [FMA:77787, FMA:TA] synonym: "raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787] synonym: "raphe nucleus" BROAD [BTO:0003387] synonym: "set of raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787] xref: BIRNLEX:1676 xref: BTO:0003387 xref: DHBA:12222 xref: FMA:77787 xref: HBA:9455 xref: MBA:165 xref: MESH:D066267 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei property_value: IAO:0000116 "TODO - check. note BTO class is placed here as it is placed in hindbrain" xsd:string property_value: RO:0002171 UBERON:0001965 {source="ABA"} property_value: RO:0002171 UBERON:0002142 {source="ABA"} [Term] id: UBERON:0007413 name: nucleus of pontine reticular formation namespace: uberon def: "A nucleus of brain that is part of a pontine reticular formation." [OBOL:automatic] synonym: "pontine reticular formation nucleus" EXACT [FMA:72245] xref: EMAPA:36642 xref: FMA:72245 xref: MBA:146 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002573 ! pontine reticular formation [Term] id: UBERON:0007414 name: nucleus of midbrain tegmentum namespace: uberon alt_id: UBERON:0012277 def: "A nucleus of brain that spans a midbrain tegmentum." [OBOL:automatic] synonym: "tegmental nuclei" EXACT OMO:0003004 [] synonym: "tegmental nucleus" EXACT [ZFA:0005577] xref: FMA:258768 xref: ZFA:0005577 is_a: UBERON:0000125 ! neural nucleus property_value: IAO:0000232 "this class groups together any nuclei in the tegmentum region, possibly including disparate structures across species" xsd:string [Term] id: UBERON:0007415 name: nucleus of midbrain reticular formation namespace: uberon def: "A nucleus of midbrain tegmentum that is part of a midbrain reticular formation." [OBOL:automatic] synonym: "mesencephalic reticular nucleus" RELATED [BAMS:MRN] synonym: "midbrain reticular formation nucleus" EXACT [FMA:62443] synonym: "midbrain reticular nucleus" EXACT [ABA:MRN] xref: BAMS:MRN xref: FMA:62443 xref: MBA:128 xref: neuronames:1993 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002639 ! midbrain reticular formation [Term] id: UBERON:0007416 name: cerebellar peduncle namespace: uberon def: "Any of the three large paired bundles of nerve fibers that connect the cerebellum to the brain stem." [MGI:csmith, MP:0009976] subset: pheno_slim synonym: "cerebellum peduncle" RELATED [EMAPA:35213] xref: BAMS:cbp xref: EMAPA:35213 xref: FMA:272298 xref: MA:0002742 xref: MBA:752 xref: NCIT:C88147 xref: neuronames:1207 xref: SCTID:362417003 xref: UMLS:C0228515 {source="ncithesaurus:Cerebellar_Peduncle"} is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis is_a: UBERON:0014891 ! brainstem white matter relationship: part_of UBERON:0002474 ! cerebellar peduncular complex [Term] id: UBERON:0007417 name: peduncle of neuraxis namespace: uberon synonym: "neuraxis peduncle" EXACT [FMA:83860] xref: FMA:83860 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0007418 name: neural decussation namespace: uberon def: "Nerve fibers crossing the midline of the neuraxis relative to their point of origin, on a course to from one level of the nervous system to another. (CUMBO, Heimer, L. The Human Brain, 2nd ed., 1995, pg 6)." [NLX:144064] subset: cumbo synonym: "chiasm" BROAD [] synonym: "chiasma" BROAD [] synonym: "decussation" BROAD [] synonym: "decussation of neuraxis" EXACT [FMA:83858] synonym: "neuraxis chiasm" EXACT [] synonym: "neuraxis chiasma" EXACT [] synonym: "neuraxis decussation" EXACT [FMA:83858] xref: FMA:83858 xref: NCIT:C28351 xref: NLX:144064 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0007425 name: decussation of diencephalon namespace: uberon def: "A neural decussation that is part of a diencephalon." [OBOL:automatic] synonym: "diencephalon decussation" EXACT [FMA:62446] xref: FMA:62446 is_a: UBERON:0007418 {source="FMA"} ! neural decussation relationship: part_of UBERON:0001894 {source="Obol"} ! diencephalon [Term] id: UBERON:0007619 name: limiting membrane of retina namespace: uberon subset: grouping_class synonym: "retina lamina" EXACT [https://github.com/obophenotype/uberon/issues/52, MA:0001318] xref: MA:0001318 xref: SCTID:280667001 is_a: UBERON:0001781 {source="UBERON"} ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: UBPROP:0000012 "MA does treat internal/external limiting membranes as layers - these are classified as laminae. We do not follow this convention. However, we do following MA is grouping these terms together" xsd:string {external_ontology="MA"} [Term] id: UBERON:0007626 name: subparaventricular zone namespace: uberon xref: BAMS:SBPV xref: BAMS:SPZ xref: DHBA:266441555 xref: HBA:4574 xref: MA:0000842 xref: MBA:347 xref: neuronames:1869 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus property_value: RO:0002171 UBERON:0001934 {source="ABA"} property_value: RO:0002171 UBERON:0002034 {source="ABA"} property_value: RO:0002171 UBERON:0002219 {source="ABA"} property_value: RO:0002171 UBERON:0002625 {source="ABA"} property_value: RO:0002171 UBERON:0002689 {source="ABA"} property_value: RO:0002171 UBERON:0002690 {source="ABA"} [Term] id: UBERON:0007627 name: magnocellular nucleus of stria terminalis namespace: uberon def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model- Rat ( Swanson-2004 )." [neuronames:3220] comment: the magnocellular nucleus projects to virtually all known major parts of the brain network that controls pelvic functions, including micturition, defecation, and penile erection, as well as to brain networks controlling nutrient and body water homeostasis. This and other evidence suggests that the magnocellular nucleus is part of a corticostriatopallidal differentiation modulating and coordinating pelvic functions with the maintenance of nutrient and body water homeostasis[PMID:16304682] synonym: "magnocellular nucleus" EXACT [MA:0000928] xref: BAMS:MA xref: EMAPA:37666 {source="MA:th"} xref: MA:0000928 xref: MBA:521 xref: neuronames:3220 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis property_value: RO:0002171 UBERON:0003017 {source="ABA"} [Term] id: UBERON:0007628 name: lateral septal complex namespace: uberon def: "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour." [BTO:0003937, http://www.fact-archive.com/] synonym: "lateral septal area" EXACT [BTO:0003937] synonym: "lateral septum" RELATED [] synonym: "lateral septum complex" RELATED [BAMS:LSX] xref: BAMS:LSX xref: BTO:0003937 xref: EMAPA:35485 xref: MA:0000933 xref: MBA:275 xref: neuronames:2672 is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex relationship: part_of UBERON:0002435 {source="ABA"} ! striatum [Term] id: UBERON:0007629 name: medial septal complex namespace: uberon def: "A septal nuclear complex that consists of the nucleus of the diagonal bands and the septal medial nuclei." [https://github.com/obophenotype/uberon/issues/1356] synonym: "medial septum complex" RELATED [BAMS:MSX] xref: BAMS:MSC xref: BAMS:MSX xref: EMAPA:35552 xref: MA:0000934 xref: MBA:904 xref: neuronames:1958 is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex property_value: RO:0002171 UBERON:0002977 {source="ABA"} [Term] id: UBERON:0007630 name: septohippocampal nucleus namespace: uberon def: "Part of septal nuclear complex. In the human, it refers to the most caudal of scattered clusters of neurons in the septum pellucidum that extend, on the underside of the corpus callosum, from the level of the medial septal nucleus to the CA fields ( Crosby-1962 ). In the rat it is associated with the lateral septal nucleus throughout its rostro-caudal course toward the CA fields ( Swanson-1998. Adapted from Brain Info." [NLX:60880] xref: BAMS:SH xref: BAMS:SHi xref: DMBA:16204 xref: EMAPA:35768 xref: MA:0000939 xref: MBA:333 xref: neuronames:1499 xref: NLX:60880 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="MA-modified"} ! septal nuclear complex property_value: RO:0002171 UBERON:0001878 {source="ABA"} property_value: RO:0002171 UBERON:0002667 {source="ABA"} [Term] id: UBERON:0007631 name: accessory olfactory bulb glomerular layer namespace: uberon synonym: "accessory olfactory bulb, glomerular layer" EXACT [ABA:AOBgl] synonym: "AOB, glomerular layer" EXACT [DMBA:AGlom] synonym: "glomerular layer of the accessory olfactory bulb" RELATED [BAMS:GlA] xref: BAMS:AOBgl xref: BAMS:gl xref: BAMS:GlA xref: DMBA:15967 xref: EMAPA:35108 xref: MA:0000967 xref: MBA:188 xref: neuronames:2715 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0004069 {source="ABA"} ! accessory olfactory bulb [Term] id: UBERON:0007632 name: Barrington's nucleus namespace: uberon synonym: "Barrington nucleus" RELATED [BAMS:B] synonym: "nucleus of Barrington" EXACT [DMBA:Bar] xref: BAMS:B xref: DHBA:12506 xref: DMBA:16973 xref: EMAPA:37436 {source="MA:th"} xref: MA:0001011 xref: MBA:280 xref: MESH:D065835 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1087 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 {source="MA"} ! pons property_value: RO:0002171 UBERON:0002143 {source="ABA"} property_value: RO:0002171 UBERON:0002147 {source="ABA"} property_value: RO:0002171 UBERON:0002149 {source="ABA"} property_value: RO:0002171 UBERON:0002151 {source="ABA"} property_value: RO:0002171 UBERON:0002633 {source="ABA"} property_value: RO:0002171 UBERON:0002682 {source="ABA"} property_value: RO:0002171 UBERON:0002963 {source="ABA"} property_value: RO:0002171 UBERON:0002968 {source="ABA"} property_value: RO:0002171 UBERON:0003011 {source="ABA"} [Term] id: UBERON:0007633 name: nucleus of trapezoid body namespace: uberon def: "A nucleus embedded within the fibers of the trapezoid body." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Trapezoid_body] synonym: "nuclei of trapezoid body" RELATED [FMA:84023] synonym: "nucleus corporis trapezoidei" RELATED OMO:0003011 [NeuroNames:576] synonym: "nucleus of the trapezoid body" RELATED [BAMS:NTB, BAMS:Tz] synonym: "nucleus trapezoidalis" RELATED OMO:0003011 [NeuroNames:576] synonym: "set of nuclei of trapezoid body" RELATED [FMA:84023] synonym: "trapezoid gray" RELATED [BIRNLEX:745] synonym: "trapezoid nuclear complex" EXACT [BIRNLEX:745] synonym: "trapezoid nuclei" RELATED [BIRNLEX:745] synonym: "Tz" BROAD OMO:0003000 [BIRNLEX:745, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:NTB xref: BAMS:Tz xref: BIRNLEX:745 xref: BM:NTB xref: DHBA:12458 xref: EMAPA:35600 xref: FMA:84023 xref: HBA:9185 xref: MA:0001018 xref: MBA:642 xref: neuronames:576 {source="BIRNLEX:745"} xref: SCTID:362405000 xref: UMLS:C0228436 {source="BIRNLEX:745"} xref: UMLS:C1289449 {source="BIRNLEX:745"} is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0000988 {source="MA"} ! pons relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex property_value: RO:0002171 UBERON:0002126 {source="ABA"} property_value: RO:0002171 UBERON:0002162 {source="ABA"} property_value: RO:0002171 UBERON:0002591 {source="ABA"} property_value: RO:0002171 UBERON:0002610 {source="ABA"} property_value: RO:0002171 UBERON:0002864 {source="ABA"} property_value: RO:0002171 UBERON:0002866 {source="ABA"} property_value: RO:0002171 UBERON:0002873 {source="ABA"} [Term] id: UBERON:0007634 name: parabrachial nucleus namespace: uberon def: "A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the Kölliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus." [Wikipedia:Parabrachial_area] subset: human_reference_atlas synonym: "parabrachial area" RELATED [] synonym: "parabrachial complex" RELATED [] synonym: "parabrachial nuclei" RELATED [] xref: BAMS:PB xref: BM:PB xref: DHBA:12481 xref: DMBA:16844 xref: EMAPA:35657 xref: MA:0001019 xref: MBA:867 xref: MESH:D065823 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1927 xref: NLX:23647 xref: Wikipedia:Parabrachial_nucleus is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 {source="MA"} ! pons property_value: RO:0002171 UBERON:0002128 {source="ABA"} property_value: RO:0002171 UBERON:0002597 {source="ABA"} property_value: RO:0002171 UBERON:0006840 {source="ABA"} property_value: RO:0002175 NCBITaxon:32525 {source="Butler, 1995"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007635 name: nucleus of medulla oblongata namespace: uberon def: "A neural nucleus that is part of a medulla oblongata." [OBOL:automatic] xref: FMA:258772 xref: SCTID:304943004 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0007637 name: hippocampus stratum lucidum namespace: uberon def: "Layer of hippocampus area CA3 lying superficial to the pyramidal cell layer that contains mossy fiber axons projecting from the dentate gyrus. A slight thickening in this layer marks the border in some species between areas CA2 and CA3. dapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)." [BIRNLEX:4108] synonym: "stratum lucidum" BROAD [BIRNLEX:4108] synonym: "stratum lucidum hippocampi" RELATED OMO:0003011 [Wikipedia:Stratum_lucidum_of_hippocampus] synonym: "stratum lucidum hippocampus" RELATED [BAMS:SLu] xref: BAMS:SLu xref: BIRNLEX:4108 xref: EMAPA:35411 xref: neuronames:1777 xref: OldNeuroNames:-975815906 {source="BIRNLEX:4108"} xref: UMLS:C0221922 {source="ncithesaurus:Stratum_Lucidum"} xref: Wikipedia:Stratum_lucidum_of_hippocampus is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0007639 name: hippocampus alveus namespace: uberon def: "Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26)." [BIRNLEX:1510] synonym: "alveus" EXACT [BIRNLEX:1510] synonym: "alveus hippocampi" RELATED OMO:0003011 [NeuroNames:186] synonym: "alveus of fornix" RELATED [BAMS:alv] synonym: "alveus of hippocampus" EXACT [FMA:83867] synonym: "alveus of the hippocampus" RELATED [BAMS:alv] synonym: "CA2 alveus" RELATED [BAMS:alv] synonym: "neuraxis alveus" EXACT [FMA:83867] xref: BAMS:Alv xref: BAMS:alv xref: BIRNLEX:1510 xref: DHBA:10570 xref: FMA:83867 xref: HBA:9234 xref: MBA:466 xref: NCIT:C32058 xref: neuronames:186 {source="BIRNLEX:1510"} xref: SCTID:369094002 xref: UMLS:C0228247 {source="BIRNLEX:1510", source="ncithesaurus:Alveus"} is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016549 ! central nervous system white matter layer relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation property_value: IAO:0000116 "TODO - check xref: NCIT:C32058 ! Alveus" xsd:string [Term] id: UBERON:0007640 name: hippocampus stratum lacunosum moleculare namespace: uberon def: "Layer of the hippocampus lying just superficial to the stratum radiatum and bounded by the pial surface of the hippocampus. The fibers of the perforant pathway fibers from entorhinal cortex and several other brain areas terminate in this layer. Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)." [BIRNLEX:1359] synonym: "lacunar-molecular layer of hippocampus" EXACT [FMA:83149] synonym: "stratum hippocampi moleculare et substratum lacunosum" EXACT OMO:0003011 [FMA:83149, FMA:TA] synonym: "stratum lacunosum moleculare" EXACT [BIRNLEX:1359, neuronames:2456] synonym: "stratum lacunosum-moleculare" EXACT [ABA:ABA] xref: BIRNLEX:1359 xref: FMA:83149 xref: neuronames:2456 {source="https://github.com/obophenotype/uberon/issues/1223"} is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0001954 ! Ammon's horn property_value: UBPROP:0000010 "Here the perforant path fibers form synapses onto the distal, apical dendrites of pyramidal cells.[WP]" xsd:string [Term] id: UBERON:0007641 name: trigeminal nuclear complex namespace: uberon def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. There is also a distinct trigeminal motor nucleus that is medial to the chief sensory nucleus[WP]." [Wikipedia:Trigeminal_nerve_nuclei] synonym: "nuclei trigemini" RELATED OMO:0003011 [Wikipedia:Trigeminal_nerve_nuclei] synonym: "trigeminal nuclei" EXACT [FMA:71248] xref: BIRNLEX:4096 xref: BM:V xref: CALOHA:TS-2077 xref: DHBA:266441713 xref: FMA:71248 xref: HBA:9203 xref: MESH:D014278 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2021 xref: UMLS:C0040999 {source="BIRNLEX:4096"} xref: Wikipedia:Trigeminal_nerve_nuclei is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI property_value: UBPROP:0000012 "in MA and FMA this is part of the pons / pontime tegmentum. We weaken this to overlaps to avoid inconsistency. In NIF this is a composite structure spanning multiple regions, which is more appropriate." xsd:string {external_ontology="MA"} [Term] id: UBERON:0007645 name: future meninx namespace: uberon alt_id: UBERON:0004065 def: "A developing mesenchymal capsule that covers the developing brain and spinal cord and is the precursor of the meningeal cluster. In mammals this gives rise to the arachnoid mater, pia mater and dura mater. In cyclostomes and fishes, the future meninx gives rise to a single meningeal layer, the primitive meninx." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "meninx primitiva" RELATED [MP:0009726] synonym: "primary meninx" EXACT [EHDAA2:0004453] synonym: "primitive meninx" RELATED [] synonym: "primordial meninx" RELATED [] xref: EHDAA2:0004453 relationship: part_of UBERON:0010743 {source="EHDAA2"} ! meningeal cluster property_value: IAO:0000116 "decide whether to treat the endo and ecto meninx as subtypes or parts of the future meninx" xsd:string property_value: UBPROP:0000001 "the outermost mesenchymal covering of the developing brain and spinal cord that is composed of tough fibrous connective tissue from which the arachnoid mater, pia mater and dura mater are formed[MP:0009726]d" xsd:string {source="MP:0009726"} [Term] id: UBERON:0007646 name: endomeninx namespace: uberon def: "The innermost layer of the mesenchymal capsule that surrounds the developing brain, primarily of neural crest origin. The endomeninx forms the leptomeninx." [ISBN:9781607950325] synonym: "future leptomeninges" EXACT [] synonym: "future leptomeninx" EXACT [] is_a: UBERON:0007645 ! future meninx [Term] id: UBERON:0007647 name: ectomeninx namespace: uberon alt_id: UBERON:0010115 def: "The outermost layer of the mesenchymal capsule that surrounds the developing brain, of mixed paraxial mesoderm and neural crest origin. The ectomeninx forms the dura mater (both inner layer and outer chondrogenic layer)." [ISBN:9781607950325] synonym: "future dura mater" EXACT [EHDAA2:0004317] xref: EHDAA2:0004317 is_a: UBERON:0007645 ! future meninx [Term] id: UBERON:0007656 name: lateral recess of fourth ventricle namespace: uberon def: "The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space." [Wikipedia:Lateral_recess] synonym: "fourth ventricle lateral recess" RELATED [BAMS:V4r] synonym: "lateral recess" BROAD [EMAPA:17257, MBA:153] synonym: "lateral recess of the 4th ventricle" RELATED [BAMS:LR4V] synonym: "recessus lateralis (ventriculi quarti)" EXACT OMO:0003011 [FMA:78470, FMA:TA] synonym: "recessus lateralis ventriculi quarti" RELATED OMO:0003011 [Wikipedia:Lateral_recess] xref: BAMS:LR4V xref: BAMS:V4r xref: DHBA:12810 xref: EMAPA:17257 xref: FMA:78470 xref: MBA:153 xref: neuronames:642 xref: SCTID:369283008 xref: Wikipedia:Lateral_recess relationship: part_of UBERON:0002422 {source="EMAPA"} ! fourth ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png" xsd:anyURI [Term] id: UBERON:0007691 name: gustatory pore namespace: uberon def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project." [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "taste pore" EXACT [FMA:63589] xref: FMA:63589 xref: NCIT:C33738 xref: SCTID:368724008 xref: UMLS:C0226971 {source="ncithesaurus:Taste_Pore"} relationship: part_of UBERON:0001727 {source="FMA"} ! taste bud property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg" xsd:anyURI [Term] id: UBERON:0007692 name: nucleus of thalamus namespace: uberon def: "A nucleus of brain that is part of a thalamus." [OBOL:automatic] synonym: "nuclear complex of thalamus" RELATED [FMA:256693] synonym: "thalamic nucleus" EXACT [MA:0002992] xref: BTO:0002452 xref: EMAPA:35859 xref: FMA:256693 xref: MA:0002992 xref: SCTID:279115000 xref: Wikipedia:List_of_thalamic_nuclei is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus property_value: IAO:0000116 "TODO - consider splitting nucleus and complex" xsd:string [Term] id: UBERON:0007699 name: tract of spinal cord namespace: uberon def: "An axon tract that is part of a spinal cord." [OBOL:automatic] synonym: "spinal cord tract" EXACT [FMA:75683] xref: FMA:75683 xref: NCIT:C12995 xref: UMLS:C1519456 {source="ncithesaurus:Spinal_Cord_Tract"} is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002316 {source="cjm"} ! white matter [Term] id: UBERON:0007702 name: tract of brain namespace: uberon def: "An axon tract that is part of a brain." [OBOL:automatic] synonym: "brain tract" EXACT [FMA:83848] synonym: "landmark tracts" RELATED [DMBA:tracts] xref: FMA:83848 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002316 {source="cjm"} ! white matter property_value: IAO:0000116 "the NIFSTD class 'nerve tract' is classified under 'regional part of brain', so it may seem like it belongs here, but actually includes spinal cord tracts" xsd:string [Term] id: UBERON:0007703 name: spinothalamic tract namespace: uberon def: "A tract that originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus. It is formed in the medulla by merger of the anterior spinothalamic tract and lateral spinothalamic tract (adapted from Braininfo.org)." [NLXANAT:1010017] xref: BAMS:spth xref: BAMS:stt xref: BTO:0006128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12789 xref: MBA:871 xref: MESH:D013133 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2058 xref: NLXANAT:1010017 xref: SCTID:280417000 xref: Wikipedia:Spinothalamic_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002316 ! white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg" xsd:anyURI property_value: UBPROP:0000001 "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO][GO:0021963]." xsd:string {source="GO:0021963"} [Term] id: UBERON:0007707 name: superior cerebellar peduncle of midbrain namespace: uberon def: "Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM)." [BIRNLEX:1162] synonym: "pedunculus cerebellaris superior (mesencephalon)" RELATED OMO:0003011 [NeuroNames:820] synonym: "SCPMB" BROAD OMO:0003000 [BIRNLEX:1162, NIFSTD:NeuroNames_abbrevSource] synonym: "SCPMB" EXACT [BIRNLEX:1162] synonym: "superior cerebellar peduncle of midbrain" EXACT [BIRNLEX:1162] synonym: "superior cerebellar peduncle of the midbrain" RELATED [NeuroNames:820] xref: BAMS:scpmb xref: BIRNLEX:1162 xref: neuronames:820 {source="BIRNLEX:1162"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum relationship: part_of UBERON:0002150 ! superior cerebellar peduncle [Term] id: UBERON:0007709 name: superior cerebellar peduncle of pons namespace: uberon subset: pheno_slim synonym: "pedunculus cerebellaris superior (pontis)" RELATED OMO:0003011 [NeuroNames:833] synonym: "SCPP" BROAD OMO:0003000 [BIRNLEX:1726, NIFSTD:NeuroNames_abbrevSource] synonym: "SCPP" EXACT [BIRNLEX:1726] synonym: "superior cerebellar peduncle of pons" EXACT [BIRNLEX:1726] synonym: "superior cerebellar peduncle of the pons" RELATED [NeuroNames:833] xref: BAMS:scpp xref: BIRNLEX:1726 xref: FMA:72495 xref: neuronames:1007150190 xref: neuronames:833 {source="BIRNLEX:1726"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002150 ! superior cerebellar peduncle relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum property_value: UBPROP:0000012 "FMA:72495 most likely denotes this class rather than the more generic parent, due to the part of relationship to pontine tegmentum." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0007710 name: intermediate nucleus of lateral lemniscus namespace: uberon synonym: "intermediate nucleus of the lateral lemniscus" RELATED [BAMS:ILL] synonym: "nucleus of the lateral lemniscus horizontal part" RELATED [BAMS:NLLh, BAMS:Nllh] synonym: "nucleus of the lateral lemniscus, horizontal part" EXACT [ABA:NLLh] xref: BAMS:ILL xref: BAMS:NLLh xref: BAMS:Nllh xref: DHBA:12456 xref: FMA:77485 xref: HBA:265504888 xref: MBA:90 xref: neuronames:1841 is_a: UBERON:0006840 ! nucleus of lateral lemniscus property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0007711 name: sixth cervical dorsal root ganglion namespace: uberon subset: human_reference_atlas synonym: "C6 dorsal root ganglion" EXACT [EMAPA:25159] synonym: "sixth cervical dorsal root ganglia" EXACT [FMA:6319] synonym: "sixth cervical dorsal root ganglion" EXACT [BIRNLEX:2608] synonym: "sixth cervical spinal ganglion" EXACT [FMA:6319] xref: BIRNLEX:2608 xref: EMAPA:25159 xref: FMA:6319 is_a: UBERON:0002834 {source="NIFSTD"} ! cervical dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007712 name: fourth thoracic spinal ganglion namespace: uberon subset: defined_by_ordinal_series subset: human_reference_atlas synonym: "fourth thoracic dorsal root ganglion" EXACT [BIRNLEX:2614, FMA:6324, https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2614 xref: EMAPA:25177 xref: FMA:6324 xref: UMLS:C0501702 {source="BIRNLEX:2614"} is_a: UBERON:0002835 {source="FMA"} ! thoracic dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007713 name: fourth sacral spinal ganglion namespace: uberon subset: human_reference_atlas synonym: "forth sacral dorsal root ganglion" EXACT [BIRNLEX:2631] synonym: "fourth sacral dorsal root ganglion" EXACT [FMA:6345, https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2631 xref: EMAPA:25173 xref: FMA:6345 xref: UMLS:C0501723 {source="BIRNLEX:2631"} is_a: UBERON:0002837 {source="FMA"} ! sacral dorsal root ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007714 name: cervical subsegment of spinal cord namespace: uberon subset: human_reference_atlas synonym: "segment part of cervical spinal cord" EXACT [BIRNLEX:1688] xref: BIRNLEX:1688 xref: FMA:256653 xref: SCTID:278749009 is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007715 name: thoracic subsegment of spinal cord namespace: uberon subset: human_reference_atlas synonym: "segment part of thoracic spinal cord" EXACT [BIRNLEX:892] xref: BIRNLEX:892 xref: FMA:256655 is_a: UBERON:0003038 ! thoracic spinal cord is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007716 name: lumbar subsegment of spinal cord namespace: uberon subset: human_reference_atlas synonym: "segment part of lumbar spinal cord" EXACT [BIRNLEX:1652] xref: BIRNLEX:1652 xref: FMA:256657 xref: SCTID:278751008 is_a: UBERON:0002792 ! lumbar spinal cord is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0002792 ! lumbar spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007717 name: sacral subsegment of spinal cord namespace: uberon subset: human_reference_atlas synonym: "segment part of sacral spinal cord" EXACT [BIRNLEX:1512] xref: BIRNLEX:1512 xref: FMA:256659 xref: SCTID:278752001 is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0005843 ! sacral spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007763 name: cerebellum vermis culmen namespace: uberon def: "The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]." [Wikipedia:Culmen_(cerebellum)] synonym: "cerebellum culmen" EXACT [UBERON:cjm] synonym: "culmen" BROAD [BIRNLEX:926, MA:0001001] synonym: "culmen lobule" EXACT [UBERON:cjm] synonym: "culmen of vermis" RELATED [FMA:83886] synonym: "lobule IV and V of vermis" RELATED [FMA:83886] synonym: "neuraxis culmen" EXACT [FMA:83886] xref: BAMS:CUL xref: BAMS:Cul xref: BIRNLEX:926 xref: FMA:83886 xref: MBA:928 xref: neuronames:659 xref: SCTID:279384001 xref: SCTID:89649002 is_a: UBERON:0004070 {source="ABA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003941 {source="FMA"} ! cerebellum anterior vermis property_value: UBPROP:0000008 "The culmen lobule (lobules IV/V) is a single structure in humans, but it is divided by the intraculminate fissure in many rodents. In some mouse strains such as SLJ/J, the intraculminate fissure is absent, in some strains such as DBA/2J it is present, and other strains (C57BL/10J and BALB/cJ) exhibit considerable variablility (PMID: 1953602).[MP]" xsd:string property_value: UBPROP:0000012 "ABA splits culmen into IV and V and IV-V" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0007764 name: paramedian reticular nucleus namespace: uberon def: "A medullary nucleus that sends its connections to the spinal cord in a mostly ipsilateral manner." [Wikipedia:Paramedian_reticular_nucleus] comment: A medullary nucleus that sends its connections to the spinal cord in a mostly ipsilateral manner, although there is some decussation. It projects to the vermis in the anterior lobe, the pyramis and the uvula. The paramedian nucleus also projects to the contralateral PRN, the gigantocellular nucleus, and the nucleus ambiguous. The paramedian reticular formation is adjacent to the abducens (VI)nucleus in the pons and adjacent to the oculomotor nucleus(III) in the midbrain. The paramedian nucleus receives afferents mostly from the fastigial nucleus in the cerebellum and the cerebral cortex; however, the projections from the spinal cord are very sparse. The descending afferent connections come mostly from the frontal and parietal lobes; however the pontine reticular formation also sends projections to the paramedian reticular nucleus. There are also very sparse innervations from the superior colliculus. Lesions in the paramedian reticular nucleus have been shown to cause a stereotyped increase in the random patterns of motion in rats. The paramedian nuclei on either side of the brain stem have been shown to mediate the horizontal eye movements on their ipsilateral sides. It seems possible that that the random motion patterns of the above rats were caused by an inability to mediate their horizontal eye movements synonym: "nucleus reticularis paramedianus" RELATED [Wikipedia:Paramedian_reticular_nucleus] synonym: "paramedian nucleus reticularis" RELATED OMO:0003011 [Wikipedia:Paramedian_reticular_nucleus] synonym: "ventral paramedian reticular nucleus" EXACT [FMA:72583] xref: BAMS:PMn xref: BAMS:PMR xref: BAMS:VPRt xref: DHBA:12496 xref: FMA:72583 xref: MBA:995 xref: neuronames:737 xref: NLX:151902 xref: Wikipedia:Paramedian_reticular_nucleus is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0007767 name: dorsal premammillary nucleus namespace: uberon synonym: "premammillary nucleus dorsal part" RELATED [BAMS:PMd] xref: BAMS:PMd xref: DMBA:15719 xref: FMA:77006 xref: HBA:4677 xref: MBA:980 xref: neuronames:1508 is_a: UBERON:0002712 ! premammillary nucleus property_value: RO:0002171 UBERON:0002035 {source="ABA"} property_value: RO:0002171 UBERON:0002206 {source="ABA"} property_value: RO:0002171 UBERON:0002634 {source="ABA"} property_value: RO:0002171 UBERON:0002706 {source="ABA"} property_value: RO:0002171 UBERON:0007768 {source="ABA"} [Term] id: UBERON:0007768 name: ventral premammillary nucleus namespace: uberon synonym: "premammillary nucleus ventral part" RELATED [BAMS:PMv] xref: BAMS:PMv xref: FMA:77007 xref: HBA:4678 xref: MBA:1004 xref: neuronames:1509 is_a: UBERON:0002712 ! premammillary nucleus property_value: RO:0002171 UBERON:0002035 {source="ABA"} property_value: RO:0002171 UBERON:0002206 {source="ABA"} property_value: RO:0002171 UBERON:0002634 {source="ABA"} property_value: RO:0002171 UBERON:0002706 {source="ABA"} property_value: RO:0002171 UBERON:0007767 {source="ABA"} [Term] id: UBERON:0007769 name: medial preoptic region namespace: uberon subset: human_reference_atlas synonym: "medial preoptic area" EXACT [ABA:MPO] synonym: "medial preopticarea" RELATED [BAMS:MPO] xref: BAMS:MPA xref: BAMS:MPO xref: DHBA:266441547 xref: EMAPA:35550 xref: HBA:4543 xref: MA:0000839 xref: MBA:523 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001928 ! preoptic area relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007834 name: lumbar spinal cord ventral commissure namespace: uberon def: "A spinal cord ventral commissure that is part of a lumbar spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "lumbar spinal cord anterior commissure" EXACT [BIRNLEX:1326] xref: BIRNLEX:1326 is_a: UBERON:0004170 ! spinal cord ventral commissure relationship: part_of UBERON:0002792 ! lumbar spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007835 name: sacral spinal cord ventral commissure namespace: uberon def: "A spinal cord ventral commissure that is part of a sacral spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "sacral spinal cord anterior commissure" EXACT [BIRNLEX:1528] xref: BIRNLEX:1528 is_a: UBERON:0004170 ! spinal cord ventral commissure relationship: part_of UBERON:0005843 ! sacral spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007836 name: cervical spinal cord ventral commissure namespace: uberon def: "A spinal cord ventral commissure that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord anterior commissure" EXACT [BIRNLEX:1552] xref: BIRNLEX:1552 is_a: UBERON:0004170 ! spinal cord ventral commissure relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007837 name: thoracic spinal cord ventral commissure namespace: uberon def: "A spinal cord ventral commissure that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord anterior commissure" EXACT [BIRNLEX:1556] xref: BIRNLEX:1556 is_a: UBERON:0004170 ! spinal cord ventral commissure relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007838 name: spinal cord white commissure namespace: uberon synonym: "white commissure of spinal cord" EXACT [FMA:77033] xref: FMA:77033 xref: SCTID:423957000 is_a: UBERON:0001020 {source="FMA"} ! nervous system commissure is_a: UBERON:0008882 ! spinal cord commissure relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0007840 name: spinal cord dorsal white commissure namespace: uberon synonym: "commissura alba posterior medullae spinalis" EXACT OMO:0003011 [FMA:77034, FMA:TA] synonym: "dorsal white commissure of spinal cord" EXACT [FMA:77034] synonym: "posterior white commissure of spinal cord" EXACT [FMA:77034] xref: FMA:77034 xref: SCTID:424400007 is_a: UBERON:0007838 {source="FMA"} ! spinal cord white commissure [Term] id: UBERON:0008332 name: hilum of neuraxis namespace: uberon synonym: "neuraxis hilum" EXACT [FMA:83871] xref: FMA:83871 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0008333 name: hilum of inferior olivary complex namespace: uberon def: "The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially." [Dorlands_Medical_Dictionary:MerckSource] synonym: "hilum nuclei olivaris caudalis" RELATED [BTO:0002300] synonym: "hilum nuclei olivaris inferioris" EXACT OMO:0003011 [FMA:TA] synonym: "hilum of caudal olivary nucleus" RELATED [BTO:0002300] synonym: "hilum of inferior olivary nucleus" EXACT [FMA:72612] synonym: "hilum of inferior olivary nucleus" RELATED [BTO:0002300] synonym: "hilum of inferior olive" RELATED [BAMS:hio] synonym: "inferior olivary hilum" EXACT [FMA:72612] synonym: "inferior olive hilum" EXACT [FMA:72612] xref: BAMS:hio xref: BTO:0002300 xref: FMA:72612 xref: neuronames:753 is_a: UBERON:0008332 {source="FMA"} ! hilum of neuraxis relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0007244 {source="BTO"} ! inferior olivary nucleus [Term] id: UBERON:0008334 name: subarachnoid sulcus namespace: uberon xref: FMA:75759 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0000315 ! subarachnoid space [Term] id: UBERON:0008335 name: ventrolateral sulcus of medulla oblongata namespace: uberon def: "A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve." [BTO:0002777] synonym: "anterolateral groove of medulla oblongata" RELATED [BTO:0002777] synonym: "anterolateral sulcus of medulla" EXACT [FMA:83797] synonym: "sulcus anterolateralis" EXACT OMO:0003011 [FMA:83797, FMA:TA] synonym: "sulcus anterolateralis medullae oblongatae" EXACT OMO:0003011 [FMA:TA] synonym: "sulcus anterolateralis medullae oblongatae" RELATED [BTO:0002777] synonym: "sulcus ventrolateralis" EXACT OMO:0003011 [FMA:83797, FMA:TA] synonym: "sulcus ventrolateralis medullae spinalis" RELATED [BTO:0002777] synonym: "ventrolateral fissure of medulla" EXACT [FMA:83797] synonym: "ventrolateral sulcus" EXACT [FMA:83797] synonym: "ventrolateral sulcus of medulla" EXACT [FMA:83797] synonym: "ventrolateral sulcus of spinal cord" RELATED [BTO:0002777] xref: BAMS:vls xref: BTO:0002777 xref: DHBA:12873 xref: FMA:83797 xref: neuronames:710 xref: SCTID:279291001 is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0001896 {source="BTO"} ! medulla oblongata [Term] id: UBERON:0008810 name: nasopalatine nerve namespace: uberon def: "A branch of that maxillary nerve that innervates the mucous membrane of the hard palate." [http://medical-dictionary.thefreedictionary.com/nasopalatine+nerve, UBERON:cjm] subset: human_reference_atlas synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nervus nasopalatinus" RELATED OMO:0003011 [Wikipedia:Nasopalatine_nerve] synonym: "Scarpa's nerve" EXACT [FMA:52797] xref: BAMS:npal xref: FMA:52797 xref: Wikipedia:Nasopalatine_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000377 ! maxillary nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0008823 name: neural tube derived brain namespace: uberon def: "A brain that develops_from a neural tube." [https://github.com/obophenotype/uberon/issues/338, OBOL:automatic] synonym: "vertebrate brain" NARROW [] is_a: UBERON:0000955 ! brain property_value: IAO:0000116 "a reasoner should automatically classify all the vertebrate ontology brain classes here" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/338" xsd:anyURI [Term] id: UBERON:0008829 name: cerebellum external granule cell layer namespace: uberon def: "Transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]." [MP:0000874, Wikipedia:Anatomy_of_the_cerebellum#Development] subset: pheno_slim synonym: "external granule layer" BROAD [] synonym: "granule cell layer" BROAD [MP:0000872] synonym: "granule layer" BROAD [MP:0000872] synonym: "outer granular layer of cerebellar cortex" EXACT [BIRNLEX:797] xref: BIRNLEX:797 xref: EMAPA:35216 xref: MA:0000994 xref: UMLS:C0228473 {source="BIRNLEX:797"} xref: UMLS:C1289480 {source="BIRNLEX:797"} xref: Wikipedia:Anatomy_of_the_cerebellum#Development is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex property_value: UBPROP:0000001 "The transient layer of the cerebellar cortex present during development which is composed of the dividing and migrating granule cell[MGI:tc]" xsd:string {source="MGI:tc"} property_value: UBPROP:0000011 "The granule neurons migrate from the exterior layer to form an inner layer known as the internal granule layer. The external granular layer ceases to exist in the mature cerebellum, leaving only granule cells in the internal granule layer[WP]" xsd:string [Term] id: UBERON:0008830 name: cerebellum internal granule cell layer namespace: uberon synonym: "inner granular layer of cerebellar cortex" EXACT [BIRNLEX:790] xref: BIRNLEX:790 xref: EMAPA:35219 xref: MA:0000995 xref: NCIT:C49141 xref: UMLS:C0228471 {source="BIRNLEX:790"} xref: UMLS:C1289476 {source="BIRNLEX:790"} xref: UMLS:C1708540 {source="ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum"} is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex [Term] id: UBERON:0008833 name: great auricular nerve namespace: uberon def: "A nerve arising from the second and third cervical nerves from the cervical plexus and innervating the skin over the parotid gland, the skin of part of the ear, the adjacent portion of the scalp, cheek, and angle of the jaw." [http://medical-dictionary.thefreedictionary.com/great+auricular+nerve, Wikipedia:Great_auricular_nerve] subset: human_reference_atlas synonym: "great auricular" RELATED [Wikipedia:Great_auricular_nerve] synonym: "greater auricular nerve" RELATED [Wikipedia:Great_auricular_nerve] synonym: "nervus auricularis magnus" EXACT OMO:0003011 [Wikipedia:Great_auricular_nerve] xref: FMA:6872 xref: SCTID:181110003 xref: Wikipedia:Great_auricular_nerve is_a: UBERON:0035648 ! nerve innervating pinna relationship: part_of UBERON:0003725 ! cervical nerve plexus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray805.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0008881 name: rostral migratory stream namespace: uberon def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb." [BIRNLEX:1702, PMID:12453055] subset: pheno_slim synonym: "RMS" RELATED OMO:0003000 [BTO:0003412] synonym: "rostral migratory pathway" RELATED [Wikipedia:Rostral_migratory_stream] xref: BIRNLEX:1702 xref: BTO:0003412 xref: DHBA:10556 xref: PBA:128012584 xref: Wikipedia:Rostral_migratory_stream is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000001 "The rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP]" xsd:string {source="Wikipedia:Rostral_migratory_stream"} property_value: UBPROP:0000001 "The transient structure formed by neurons migrating from the subventricular zone into the olfactory bulb[MP:0004279]s" xsd:string {source="MP:0004279"} property_value: UBPROP:0000008 "In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)" xsd:string {source="BTO"} [Term] id: UBERON:0008882 name: spinal cord commissure namespace: uberon def: "The nerve fiber tracts that span the midline of the spinal cord." [MP:0009694] subset: pheno_slim xref: EMAPA:37955 {source="MA:th"} is_a: UBERON:0001020 ! nervous system commissure is_a: UBERON:0007699 ! tract of spinal cord relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0008884 name: left putamen namespace: uberon def: "A putamen that is part of a left cerebral hemisphere." [OBOL:automatic] xref: FMA:72829 xref: HBA:4288 is_a: UBERON:0001874 ! putamen relationship: part_of UBERON:0002812 ! left cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI [Term] id: UBERON:0008885 name: right putamen namespace: uberon def: "A putamen that is part of a right cerebral hemisphere." [OBOL:automatic] xref: FMA:72828 xref: HBA:4289 is_a: UBERON:0001874 ! putamen relationship: part_of UBERON:0002813 ! right cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI [Term] id: UBERON:0008902 name: lateral recess of third ventricle namespace: uberon def: "Lateral protrusion of the third ventricle." [ZFIN:curator] synonym: "lateral recess" BROAD OMO:0003004 [ZFA:0000231] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] synonym: "lateral recesses" RELATED OMO:0003004 [ZFA:0000231] xref: TAO:0000231 xref: ZFA:0000231 relationship: part_of UBERON:0002286 {source="ZFA"} ! third ventricle [Term] id: UBERON:0008906 name: lateral line nerve namespace: uberon def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] synonym: "lateral line nerves" EXACT OMO:0003004 [ZFA:0001479] xref: AAO:0010077 xref: TAO:0001479 xref: ZFA:0001479 is_a: UBERON:0001785 ! cranial nerve property_value: UBPROP:0000001 "Any of the sensory nerves that innervate mechano- and electroreceptors of the lateral line system. The lateral line nerves may be separated in two components, anterior and posterior, in relation to the position of its roots with respect to the otic capsule. These nerves develop from lateral line placodes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO", source="AAO:SIQ"} property_value: UBPROP:0000002 "relationship loss: innervates lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"} property_value: UBPROP:0000002 "relationship type change: part_of_proxy lateral line system (AAO:0000975) CHANGED TO: part_of lateral line system (UBERON:0002540)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"} [Term] id: UBERON:0008921 name: substratum of layer of retina namespace: uberon def: "Missing definition for term UBERON:0008921. Please replace it using linked reference." [UBERON:CL_meeting_20110725] is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0008922 name: sublaminar layer S1 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000113 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 [Term] id: UBERON:0008923 name: sublaminar layer S2 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000114 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008924 name: sublaminar layer S3 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000115 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008925 name: sublaminar layer S4 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000116 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008926 name: sublaminar layer S5 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm] xref: CP:0000117 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008927 name: sublaminar layers S1 or S2 namespace: uberon def: "One of sublaminar layers S1 or S2." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000118 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008928 name: sublaminar layers S2 or S3 namespace: uberon def: "One of sublaminar layers S2 or S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000119 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008929 name: sublaminar layers S4 or S5 namespace: uberon def: "One of sublaminar layers S4 or S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000120 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008930 name: somatosensory cortex namespace: uberon def: "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus." [MESH:A08.186.211.730.885.213.670.675] subset: efo_slim subset: pheno_slim synonym: "primary somatic sensory cortex" RELATED [FMA:242642] synonym: "somatic sensory cortex" EXACT [FMA:242642] synonym: "somatic sensory cortex" RELATED [BTO:0004353] synonym: "somatosensory area" RELATED [BTO:0004353] synonym: "somatosensory areas" RELATED [BAMS:SS] synonym: "somesthetic area" RELATED [BTO:0004353] xref: BAMS:SS xref: BTO:0004353 xref: EFO:0001391 xref: FMA:242642 xref: GAID:681 xref: MBA:453 xref: MESH:D013003 xref: neuronames:3241 xref: SCTID:279252006 is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain relationship: part_of UBERON:0002581 {source="BTO"} ! postcentral gyrus property_value: IAO:0000116 "TODO - add layers" xsd:string property_value: IAO:0000116 "TODO - add relationship to system (not part of, as sensory systems are peripheral)" xsd:string [Term] id: UBERON:0008933 name: primary somatosensory cortex namespace: uberon def: "(Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker (b71,b76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the ratbs cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the bgranular aggregateb type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the bbarrel-fieldb type (originally described by Woolsey and Van der Loos, b70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, b74)." [NLX:143551] subset: pheno_slim synonym: "postcentral gyrus" RELATED [Wikipedia:Sensory_system] synonym: "primary somatosensory area" RELATED [BAMS:SSp] synonym: "primary somatosensory cortex (area S1, areas 3,1,2)" EXACT [DHBA:10209] synonym: "S1" BROAD OMO:0003000 [] synonym: "S1C" RELATED OMO:0003000 [DHBA:10209] synonym: "somatosensory area 1" EXACT [Wikipedia:Sensory_system] xref: BAMS:S1 xref: BAMS:SSp xref: DHBA:10209 xref: EMAPA:35706 xref: MA:0000908 xref: MBA:322 xref: neuronames:1350 xref: NLX:143551 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0016530 {source="DHBA", source="MA", source="NIFSTD"} ! parietal cortex property_value: UBPROP:0000012 "ABA disjointness - Removed relationship: part_of UBERON:0001870 frontal cortex" xsd:string {external_ontology="ABA"} [Term] id: UBERON:0008934 name: secondary somatosensory cortex namespace: uberon def: "The area of the upper bank of the lateral sulcus that is involved in somatic sensation." [ISBN:0838580343, MP:0000863] subset: pheno_slim synonym: "S2" BROAD OMO:0003000 [] synonym: "somatosensory area 2" EXACT [Wikipedia:Sensory_system] synonym: "supplemental somatosensory area" RELATED [BAMS:SSs] xref: BAMS:S2 xref: BAMS:SSs xref: EMAPA:35756 xref: MA:0000918 xref: MBA:378 xref: neuronames:1909 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0001872 {source="MA"} ! parietal lobe relationship: part_of UBERON:0010262 {source="WP"} ! operculum of brain property_value: IAO:0000116 "TODO - check brodmann" xsd:string [Term] id: UBERON:0008939 name: pedal ganglion namespace: uberon def: "The pedal ganglia mainly are necessary for coordination of locomotion of a snail." [BTO:0001012] xref: BTO:0001012 is_a: UBERON:0000045 {source="BTO"} ! ganglion [Term] id: UBERON:0008940 name: parietal ganglion namespace: uberon def: "A lateral ganglion that innervates pallial cavity, gills and skin of a snail[BTO,modified]." [BTO:0001841] xref: BTO:0001841 is_a: UBERON:0000045 {source="BTO"} ! ganglion [Term] id: UBERON:0008941 name: pleural ganglion namespace: uberon def: "A knot of nerves in The pallial cavity that innervates the mantle of a snail[BTO,modified]." [BTO:0001842] xref: BTO:0001842 is_a: UBERON:0000045 {source="BTO"} ! ganglion property_value: IAO:0000116 "to be ceded to MOLO" xsd:string [Term] id: UBERON:0008942 name: gastropod cerebral ganglion namespace: uberon def: "The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail." [BTO:0001843] synonym: "cerebral ganglion" EXACT [BTO:0001843] xref: BTO:0001843 is_a: UBERON:0000045 {source="BTO"} ! ganglion property_value: IAO:0000116 "consider merging into brain" xsd:string [Term] id: UBERON:0008964 name: abdominal ganglion of visceral hump namespace: uberon def: "An unpaired knot of nerves in The visceral sacs that innervates the pallial organs as well as the inner organs." [BTO:0000022] synonym: "abdominal ganglion" RELATED [BTO:0000022] synonym: "visceral ganglion" RELATED [BTO:0000022] xref: BTO:0000022 is_a: UBERON:0000045 {source="BTO"} ! ganglion [Term] id: UBERON:0008967 name: centrum semiovale namespace: uberon def: "The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers." [Wikipedia:Semioval_center] synonym: "centrum ovale" EXACT OMO:0003011 [FMA:61939, FMA:TA] synonym: "centrum semiovale" RELATED OMO:0003011 [Wikipedia:Semioval_center] synonym: "cerebral white matter" RELATED [] synonym: "corpus medullare cerebri" EXACT OMO:0003011 [FMA:61939, FMA:TA] synonym: "medullary center" EXACT [FMA:61939] synonym: "semioval center" RELATED [BTO:0000229] synonym: "substantia centralis medullaris cerebri" EXACT OMO:0003011 [FMA:61939, FMA:TA] synonym: "white matter of cerebrum" RELATED [FMA:61939] xref: BAMS:cw xref: BAMS:sovc xref: BTO:0000229 xref: FMA:61939 xref: neuronames:190 xref: SCTID:369198002 xref: Wikipedia:Semioval_center is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/95/Gray752.png" xsd:anyURI property_value: UBPROP:0000012 "WP suggests a merge with cerebral white matter" xsd:string [Term] id: UBERON:0008993 name: habenular nucleus namespace: uberon def: "Either of the two neural nuclei within the habenula." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "ganglion habenulae" RELATED [BTO:0003685] synonym: "habenular nuclei" RELATED OMO:0003004 [DHBA:HN] synonym: "nucleus habenulae" RELATED [BTO:0003685] xref: BAMS:N.Hb xref: BTO:0003685 xref: DHBA:10452 xref: EHDAA2:0004710 xref: HBA:4521 xref: SCTID:279303009 xref: Wikipedia:Habenular_nuclei is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001904 ! habenula property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0008995 name: nucleus of cerebellar nuclear complex namespace: uberon def: "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii." [BTO:0003835] subset: pheno_slim synonym: "cerebellar nucleus" EXACT [BTO:0003835] synonym: "deep cerebellar nucleus" EXACT [] xref: BTO:0003835 xref: EMAPA:35272 xref: FMA:321695 xref: MA:0000203 xref: SCTID:279220006 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002130 ! cerebellar nuclear complex property_value: RO:0002175 NCBITaxon:119203 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:1476529 property_value: RO:0002175 NCBITaxon:32524 property_value: RO:0002175 NCBITaxon:7878 property_value: RO:0002175 NCBITaxon:7896 property_value: RO:0002175 NCBITaxon:8292 property_value: UBPROP:0000008 "One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[BgeeDb][ISBN:0471888893]" xsd:string [Term] id: UBERON:0008998 name: vasculature of brain namespace: uberon alt_id: UBERON:0005284 def: "System pertaining to blood vessels in the brain." [BTO:0003840] subset: efo_slim synonym: "brain vasculature" EXACT [] synonym: "cerebrovascular system" EXACT [BTO:0003840] synonym: "intracerebral vasculature" EXACT [FMA:61935] xref: BTO:0003840 xref: EFO:0003491 xref: EMAPA:35186 xref: FMA:242007 xref: FMA:61935 xref: SCTID:362029003 xref: TAO:0000099 xref: ZFA:0000099 is_a: UBERON:0036303 ! vasculature of central nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0009009 name: carotid sinus nerve namespace: uberon def: "A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius)." [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] subset: human_reference_atlas synonym: "carotid branch of glossopharyngeal nerve" EXACT [FMA:53488] synonym: "Hering sinus nerve" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] synonym: "ramus sinus carotici" EXACT OMO:0003011 [FMA:53488] synonym: "ramus sinus carotici nervi glossopharyngei" EXACT OMO:0003011 [] synonym: "ramus sinus carotici nervus glossopharyngei" EXACT OMO:0003011 [FMA:53488, FMA:TA] synonym: "sinus nerve of Hering" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] xref: BTO:0004978 xref: FMA:53488 xref: SCTID:50624003 xref: Wikipedia:Branch_of_glossopharyngeal_nerve_to_carotid_sinus is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001649 ! glossopharyngeal nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009050 name: nucleus of solitary tract namespace: uberon def: "A neural nucleus that is part of the solitary tract nuclear complex. The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [OBOL:automatic, Wikipedia:Solitary_nucleus] synonym: "nuclei tractus solitarii" RELATED OMO:0003011 [NeuroNames:742] synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:1429] synonym: "nucleus of the tractus solitarius" EXACT [BIRNLEX:1429] synonym: "nucleus of tractus solitarius" EXACT [Wikipedia:Solitary_nucleus] synonym: "nucleus solitarius" RELATED OMO:0003011 [NeuroNames:742] synonym: "nucleus tracti solitarii" RELATED OMO:0003011 [NeuroNames:742] synonym: "nucleus tractus solitarii" RELATED OMO:0003011 [BTO:0003963] synonym: "nucleus tractus solitarii medullae oblongatae" EXACT OMO:0003011 [Wikipedia:Solitary_nucleus] synonym: "solitary nuclear complex" RELATED [NeuroNames:742] synonym: "solitary nucleus" EXACT [] synonym: "solitary nucleus" RELATED [BTO:0003963] synonym: "solitary tract nucleus" EXACT [] xref: BAMS:NTS xref: BAMS:Sol xref: BIRNLEX:1429 xref: BM:Me-NS xref: BTO:0003963 xref: DHBA:12557 xref: EMAPA:35787 xref: EV:0100288 xref: FMA:256691 xref: GAID:593 xref: HBA:9653 xref: MA:0001052 xref: MBA:651 xref: MESH:D017552 xref: NCIT:C13067 xref: ncithesaurus:Nucleus_of_the_Solitary_Tract xref: neuronames:742 {source="BIRNLEX:1429"} xref: UMLS:C0175518 {source="ncithesaurus:Solitary_Nucleus", source="BIRNLEX:1429"} xref: Wikipedia:Solitary_nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus relationship: part_of UBERON:0002126 ! solitary tract nuclear complex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI [Term] id: UBERON:0009051 name: gelatinous nucleus of solitary tract namespace: uberon xref: FMA:77463 xref: MBA:674 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009052 name: medial nucleus of solitary tract namespace: uberon xref: FMA:229585 xref: MBA:691 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009053 name: dorsal nucleus of trapezoid body namespace: uberon synonym: "dorsal nucleus of trapezoid body" EXACT [BIRNLEX:2575] synonym: "nucleus dorsalis corporis trapezoidei" EXACT OMO:0003011 [] xref: BIRNLEX:2575 xref: neuronames:1282 xref: SCTID:369021001 xref: UMLS:C0228438 {source="BIRNLEX:2575"} xref: UMLS:C1289450 {source="BIRNLEX:2575"} is_a: UBERON:0007633 ! nucleus of trapezoid body property_value: IAO:0000116 "merge with SOC? See https://github.com/obophenotype/uberon/issues/631#issuecomment-67754754" xsd:string [Term] id: UBERON:0009121 name: vomeronasal nerve namespace: uberon def: "Nerve carrying fibers from the vomeronasal organ epithelium to the accessory olfactory bulb." [AAO:DSM, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] synonym: "accessory olfactory bulb vomeronasal nerve" RELATED [BAMS:vn] xref: AAO:0010608 xref: BAMS:vn xref: BAMS:von xref: BTO:0001351 xref: MBA:949 xref: neuronames:1567 xref: NLXANAT:1005018 is_a: UBERON:0001785 {source="NIFSTD"} ! cranial nerve property_value: UBPROP:0000001 "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010608", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000008 "In the human this disappears before birth" xsd:string [Term] id: UBERON:0009124 name: geniculate placode namespace: uberon def: "Rostralmost epibranchial placode. Associated with 1st branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to geniculate ganglion synonym: "epibranchial placode 1" EXACT [EHDAA2:0004206] synonym: "facial epibranchial placode" EXACT [XAO:0004211] synonym: "facial placode" EXACT [ZFA:0001295] synonym: "facial VII placode" RELATED [] synonym: "hyoid placode" RELATED [ISBN:0471888893] synonym: "hyoid VII placode" RELATED [ISBN:0471888893] xref: EHDAA2:0004206 xref: TAO:0001295 xref: XAO:0004211 xref: ZFA:0001295 is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode [Term] id: UBERON:0009125 name: petrosal placode namespace: uberon def: "Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to glossopharyngeal ganglion synonym: "epibranchial placode 2" EXACT [EHDAA2:0004207] synonym: "glossopharyngeal epibranchial placode" EXACT [XAO:0004212] synonym: "glossopharyngeal IX placode" EXACT [ISBN:0471888893] synonym: "glossopharyngeal placode" EXACT [ISBN:0471888893, ZFA:0001296] xref: EHDAA2:0004207 xref: TAO:0001296 xref: XAO:0004212 xref: ZFA:0001296 is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode [Term] id: UBERON:0009126 name: nodosal placode namespace: uberon def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: Gives rise to inferior vagus ganglion. Note that ZFA has 4 vagal placodes synonym: "epibranchial placode 3" EXACT [EHDAA2:0004208] synonym: "nodose placode" EXACT [XAO:0004213] synonym: "nodose placodes" EXACT OMO:0003004 [XAO:0004213] synonym: "vagal epibranchial placode" EXACT [XAO:0004213] synonym: "vagal epibranchial placodes" EXACT OMO:0003004 [XAO:0004213] synonym: "vagal placode" RELATED [ISBN:0471888893] synonym: "vagal X placode" RELATED [ISBN:0471888893] xref: EHDAA2:0004208 xref: XAO:0004213 is_a: UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibranchial placode [Term] id: UBERON:0009127 name: epibranchial ganglion namespace: uberon def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest subset: human_reference_atlas synonym: "epibranchial ganglia" EXACT OMO:0003004 [ZFA:0001555] xref: BTO:0006250 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001555 xref: ZFA:0001555 is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009570 name: spinal cord sulcus limitans namespace: uberon def: "A sulcus limitans of neural tube that is part of a future spinal cord." [OBOL:automatic] synonym: "spinal cord lateral wall sulcus limitans" EXACT [EHDAA2:0001265] xref: EHDAA2:0001265 xref: EMAPA:17584 xref: VHOG:0001548 relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0009571 name: ventral midline namespace: uberon def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] xref: FBbt:00000093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0009572 name: lumen of central canal of spinal cord namespace: uberon def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal] synonym: "cavity of central canal of spinal cord" EXACT [FMA:242845] synonym: "central canal lumen" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "neural lumen" RELATED [] synonym: "spinal cord lumen" EXACT [EMAPA:25042] xref: EMAPA:25042 xref: FMA:242845 xref: Wikipedia:Central_canal relationship: part_of UBERON:0002291 ! central canal of spinal cord relationship: part_of UBERON:0005281 {source="FMA-modified"} ! ventricular system of central nervous system [Term] id: UBERON:0009573 name: sulcus limitans of fourth ventricle namespace: uberon def: "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP]." [Wikipedia:Sulcus_limitans] synonym: "s. limitans fossae rhomboideae" RELATED OMO:0003011 [Wikipedia:Sulcus_limitans] synonym: "sulcus limitans" BROAD [FMA:78496] xref: BAMS:slim xref: BAMS:slm xref: DHBA:12823 xref: FMA:78496 xref: NCIT:C33656 xref: neuronames:629 xref: UMLS:C0262332 {source="ncithesaurus:Sulcus_Limitans"} xref: Wikipedia:Sulcus_limitans relationship: part_of UBERON:0002422 ! fourth ventricle property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png" xsd:anyURI [Term] id: UBERON:0009576 name: medulla oblongata sulcus limitans namespace: uberon def: "A sulcus limitans of neural tube that is part of a future medulla oblongata." [OBOL:automatic] xref: EHDAA2:0001100 xref: EMAPA:17561 relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0009577 name: metencephalon sulcus limitans namespace: uberon def: "A sulcus limitans of neural tube that is part of a future metencephalon." [OBOL:automatic] xref: EHDAA2:0001161 xref: EMAPA:17567 relationship: part_of UBERON:0010092 ! future metencephalon [Term] id: UBERON:0009578 name: myelencephalon sulcus limitans namespace: uberon def: "A sulcus limitans of neural tube that is part of a future myelencephalon." [OBOL:automatic] xref: EHDAA2:0001945 relationship: part_of UBERON:0010096 ! future myelencephalon [Term] id: UBERON:0009579 name: myelencephalon basal plate namespace: uberon synonym: "basal plate myelencephalon" EXACT [VHOG:0000322] synonym: "future myelencephalon basal plate" EXACT [EHDAA2:0000646] xref: EHDAA2:0000646 xref: EMAPA:17088 xref: VHOG:0000322 is_a: UBERON:0004064 ! neural tube basal plate property_value: IAO:0000116 "TODO - check EHDAA2 post-CNS-revision" xsd:string property_value: UBPROP:0000001 "The ventral half of the developing neural tube that is the myelencephalon. [Chordate_evolution_and_the_origin_of_craniates:_An_old_brain_in_a_new_head._AnaT_Rec_(New_Anat)_(2000)_261(3):_111-125, See_Butler_AB][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000322", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009580 name: diencephalon mantle layer namespace: uberon synonym: "diencephalon lateral wall mantle layer" EXACT [] synonym: "mantle layer lateral wall diencephalon" EXACT [VHOG:0000912] xref: EHDAA2:0000397 xref: EMAPA:16906 xref: VHOG:0000912 is_a: UBERON:0004061 ! neural tube mantle layer [Term] id: UBERON:0009581 name: midbrain mantle layer namespace: uberon synonym: "mantle layer lateral wall mesencephalon" RELATED [VHOG:0000910] synonym: "mantle layer lateral wall midbrain" EXACT [VHOG:0000910] synonym: "midbrain lateral wall mantle layer" EXACT [] xref: EHDAA2:0001172 xref: EMAPA:16977 xref: VHOG:0000910 is_a: UBERON:0004061 ! neural tube mantle layer [Term] id: UBERON:0009582 name: spinal cord lateral wall namespace: uberon subset: efo_slim synonym: "lateral wall spinal cord" EXACT [ZFA:0000996] xref: EFO:0003602 xref: EMAPA:17579 xref: MA:0003192 xref: TAO:0000996 xref: ZFA:0000996 relationship: part_of UBERON:0002240 {source="EMAPA"} ! spinal cord [Term] id: UBERON:0009583 name: spinal cord mantle layer namespace: uberon synonym: "mantle layer lateral wall spinal cord" EXACT [VHOG:0000911] synonym: "spinal cord lateral wall mantle layer" EXACT [] xref: EMAPA:17580 xref: VHOG:0000911 is_a: UBERON:0004061 ! neural tube mantle layer relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0009623 name: spinal nerve root namespace: uberon def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A08.800.800.720.725] subset: human_reference_atlas synonym: "root of spinal nerve" EXACT [FMA:14060] synonym: "spinal neural root" EXACT [FMA:14060] synonym: "spinal root" EXACT [BTO:0000883] xref: BTO:0000883 xref: DHBA:146035120 xref: FMA:14060 xref: GAID:717 xref: MESH:D013126 xref: NCIT:C12791 xref: UMLS:C0037940 {source="ncithesaurus:Spinal_Nerve_Root"} xref: ZFA:0005578 is_a: UBERON:0002211 {source="FMA"} ! nerve root property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd:string property_value: UBPROP:0000012 "ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS)" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0009624 name: lumbar nerve namespace: uberon def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves] subset: human_reference_atlas synonym: "lumbar spinal nerve" EXACT [FMA:5861] synonym: "nervi lumbales" RELATED OMO:0003011 [Wikipedia:Lumbar_nerves] synonym: "nervus lumbalis" EXACT OMO:0003011 [FMA:5861, FMA:TA] xref: FMA:5861 xref: NCIT:C33015 xref: neuronames:1730 xref: SCTID:361600002 xref: UMLS:C0228897 {source="ncithesaurus:Lumbar_Nerve"} xref: Wikipedia:Lumbar_nerves is_a: UBERON:0001780 ! spinal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009625 name: sacral nerve namespace: uberon def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves] subset: human_reference_atlas synonym: "nervi sacrales" RELATED OMO:0003011 [Wikipedia:Sacral_nerves] synonym: "nervus sacralis" EXACT OMO:0003011 [FMA:5862, FMA:TA] synonym: "sacral spinal nerve" EXACT [FMA:5862] xref: FMA:5862 xref: NCIT:C33505 xref: neuronames:1720 xref: SCTID:361601003 xref: UMLS:C0228922 {source="ncithesaurus:Sacral_Nerve"} xref: Wikipedia:Sacral_nerves is_a: UBERON:0001780 ! spinal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009629 name: coccygeal nerve namespace: uberon def: "The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone." [Wikipedia:Coccygeal_nerve] synonym: "coccygeal spinal nerve" EXACT [FMA:5863] synonym: "nervus coccygeus" RELATED OMO:0003011 [Wikipedia:Coccygeal_nerve] xref: FMA:5863 xref: NCIT:C32333 xref: neuronames:2369 xref: SCTID:287477006 xref: UMLS:C0228967 {source="ncithesaurus:Coccygeal_Nerve"} xref: Wikipedia:Coccygeal_nerve is_a: UBERON:0001780 ! spinal nerve property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] id: UBERON:0009630 name: root of thoracic nerve namespace: uberon def: "A spinal nerve root that is part of a thoracic nerve." [OBOL:automatic] synonym: "nerve root part of thoracic spinal cord" EXACT [NIF:NIF] synonym: "thoracic nerve root" EXACT [FMA:14064] synonym: "thoracic neural root" EXACT [FMA:14064] xref: BIRNLEX:836 xref: FMA:14064 is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009631 name: root of lumbar spinal nerve namespace: uberon def: "A spinal nerve root that is part of a lumbar nerve." [OBOL:automatic] synonym: "lumbar spinal nerve root" EXACT [FMA:16421] synonym: "lumbar spinal neural root" EXACT [FMA:16421] synonym: "nerve root part of lumbar spinal cord" EXACT [NIF:NIF] xref: BIRNLEX:1613 xref: FMA:16421 xref: NCIT:C12924 xref: SCTID:180968005 xref: UMLS:C0581666 {source="ncithesaurus:Lumbar_Spinal_Nerve_Root"} is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009632 name: root of cervical nerve namespace: uberon synonym: "cervical neural root" EXACT [FMA:16422] synonym: "cervical spinal root" EXACT [FMA:16422] synonym: "nerve root part of cervical spinal cord" EXACT [NIF:NIF] synonym: "root of cervical spinal nerve" EXACT [FMA:16422] xref: BIRNLEX:955 xref: FMA:16422 xref: NCIT:C12893 xref: SCTID:180966009 xref: UMLS:C0581631 {source="ncithesaurus:Cervical_Spinal_Nerve_Root"} is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009633 name: root of sacral nerve namespace: uberon def: "A spinal nerve root that is part of a sacral nerve." [OBOL:automatic] synonym: "nerve root part of sacral spinal cord" EXACT [NIF:NIF] synonym: "root of sacral spinal nerve" EXACT [FMA:18028] synonym: "sacral neural root" EXACT [FMA:18028] xref: BIRNLEX:1518 xref: FMA:18028 xref: NCIT:C12925 xref: SCTID:244454000 xref: UMLS:C0581672 {source="ncithesaurus:Sacral_Spinal_Nerve_Root"} is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009634 name: root of coccygeal nerve namespace: uberon def: "A spinal nerve root that is part of a coccygeal nerve." [OBOL:automatic] synonym: "coccygeal neural root" EXACT [FMA:18131] synonym: "coccygeal spinal nerve root" EXACT [FMA:18131] synonym: "root of coccygeal spinal nerve" EXACT [FMA:18131] xref: FMA:18131 is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009641 name: ansa lenticularis namespace: uberon def: "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus." [Wikipedia:Ansa_lenticularis] synonym: "ansa lenticularis in thalamo" EXACT OMO:0003011 [FMA:TA] synonym: "ansa lenticularis in thalamus" EXACT [FMA:62070] synonym: "ventral peduncle of lateral forebrain bundle" EXACT [FMA:62070] xref: BAMS:al xref: DHBA:10571 xref: FMA:62070 xref: HBA:9237 xref: neuronames:444 xref: NLXANAT:1010011 xref: SCTID:37467007 xref: Wikipedia:Ansa_lenticularis is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001900 {source="FMA"} ! ventral thalamus property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/DA-loops_in_PD.jpg" xsd:anyURI [Term] id: UBERON:0009643 name: central tegmental tract namespace: uberon def: "A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info)." [NLXANAT:1010012] xref: BAMS:ctg xref: DHBA:12730 xref: FMA:83850 xref: HBA:12952 xref: neuronames:2204 xref: NLXANAT:1010012 xref: SCTID:369034000 xref: Wikipedia:Central_tegmental_tract is_a: UBERON:0007702 {source="FMA"} ! tract of brain property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Midbrainsuperiorcolliculus.png" xsd:anyURI property_value: UBPROP:0000001 "The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum[Wikipedia:Central_tegmental_tract]." xsd:string {source="Wikipedia:Central_tegmental_tract"} [Term] id: UBERON:0009646 name: lumbar sympathetic nerve trunk namespace: uberon def: "A sympathetic nerve trunk that is part of a lower back." [OBOL:automatic] synonym: "lumbar part of sympathetic trunk" RELATED [FMA:6263] synonym: "lumbar sympathetic chain" RELATED [FMA:6263] synonym: "lumbar sympathetic trunk" EXACT [FMA:6263] xref: EMAPA:37655 {source="MA:th"} xref: FMA:6263 xref: MA:0001163 xref: NCIT:C52828 xref: SCTID:280534006 xref: UMLS:C1708762 {source="ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk"} is_a: UBERON:0004295 ! sympathetic nerve trunk [Term] id: UBERON:0009661 name: midbrain nucleus namespace: uberon def: "Nucleus located in the midbrain." [ZFIN:curator] xref: SCTID:279285003 xref: TAO:0002209 xref: ZFA:0001665 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0009662 name: hindbrain nucleus namespace: uberon def: "Nucleus located within the hindbrain." [ZFIN:curator] xref: TAO:0002177 xref: ZFA:0001658 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0009663 name: telencephalic nucleus namespace: uberon def: "A nucleus of brain that is part of a telencephalon." [OBOL:automatic] xref: TAO:0002178 xref: ZFA:0001660 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0009673 name: accessory XI nerve cranial component namespace: uberon comment: Thus in contemporary discussions of the accessory nerve, the common practice is to dismiss the cranial part altogether, referring to the accessory nerve specifically as the spinal accessory nerve. xref: EHDAA2:0000107 xref: EHDAA:5574 xref: EMAPA:17266 xref: MA:0001089 xref: VHOG:0001174 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001759 ! vagus nerve relationship: part_of UBERON:0002019 {source="MA"} ! accessory XI nerve property_value: IAO:0000116 "May be obsoleted in future. WP states: Traditional descriptions of the accessory nerve divide it into two parts: a spinal part and a cranial part.[1] But because the cranial component rapidly joins the vagus nerve and serves the same function as other vagal nerve fibers, modern descriptions often consider the cranial component part of the vagus nerve and not part of the accessory nerve proper." xsd:string property_value: UBPROP:0000003 "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001174", ontology="VHOG", source="Wikipedia:Cranial_nerves", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009674 name: accessory XI nerve spinal component namespace: uberon def: "The spinal root of accessory nerve (or part) is firm in texture, and its fibers arise from the motor cells in the lateral part of the anterior column of the gray substance of the medulla spinalis as low as the fifth cervical nerve. Passing through the lateral funiculus of the medulla spinalis, they emerge on its surface and unite to form a single trunk, which ascends between the ligamentum denticulatum and the posterior roots of the spinal nerves; enters the skull through the foramen magnum, and is then directed to the jugular foramen, through which it passes, lying in the same sheath of dura mater as the vagus, but separated from it by a fold of the arachnoid. In the jugular foramen, it receives one or two filaments from the cranial part of the nerve, or else joins it for a short distance and then separates from it again. As its exit from the jugular foramen, it runs backward in front of the internal jugular vein in 66.6 per cent. of cases, and behind in it 33.3 per cent. The nerve then descends obliquely behind the Digastricus and Stylohyoideus to the upper part of the Sternocleidomastoideus; it pierces this muscle, and courses obliquely across the posterior triangle of the neck, to end in the deep surface of the Trapezius. As it traverses the Sternocleidomastoideus it gives several filaments to the muscle, and joins with branches from the second cervical nerve. In the posterior triangle it unites with the second and third cervical nerves, while beneath the Trapezius it forms a plexus with the third and fourth cervical nerves, and from this plexus fibers are distributed to the muscle." [Wikipedia:Spinal_root_of_accessory_nerve] synonym: "spinal part of the accessory nerve" EXACT [NeuroNames:1709] xref: EHDAA2:0000108 xref: EHDAA:5576 xref: EMAPA:17267 xref: MA:0001090 xref: neuronames:1709 xref: VHOG:0001115 xref: Wikipedia:Spinal_root_of_accessory_nerve is_a: UBERON:0001780 ! spinal nerve relationship: part_of UBERON:0002019 {source="EHDAA2"} ! accessory XI nerve property_value: UBPROP:0000003 "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001115", ontology="VHOG", source="Wikipedia:Cranial_nerves", source="http://bgee.unil.ch/"} [Term] id: UBERON:0009675 name: chorda tympani branch of facial nerve namespace: uberon def: "The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves." [Wikipedia:Chorda_tympani] subset: human_reference_atlas synonym: "chorda tympani" EXACT [FMA:53228] synonym: "chorda tympani nerve" RELATED [Wikipedia:Chorda_tympani] synonym: "corda tympani nerve" RELATED [Wikipedia:Chorda_tympani] synonym: "facial VII nerve chorda tympani branch" EXACT [MA:0001092] synonym: "nervus corda tympani" RELATED [Wikipedia:Chorda_tympani] synonym: "parasympathetic root of submandibular ganglion" EXACT [FMA:53228] synonym: "radix parasympathica ganglii submandibularis" EXACT [FMA:TA] synonym: "tympanic cord" RELATED [Wikipedia:Chorda_tympani] xref: EHDAA2:0000490 xref: EHDAA:3719 xref: EMAPA:18217 xref: FMA:53228 xref: MA:0001092 xref: neuronames:1434 xref: SCTID:280274004 xref: VHOG:0001343 xref: Wikipedia:Chorda_tympani is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001647 ! facial nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009676 name: early telencephalic vesicle namespace: uberon subset: efo_slim synonym: "early telencephalic ventricle" RELATED [] synonym: "early telencephalic vesicle" EXACT [EHDAA2:0001981] xref: EFO:0003562 xref: EHDAA2:0001981 xref: EHDAA:1993 xref: EHDAA:2671 xref: EMAPA:16914 is_a: UBERON:0013150 ! future brain vesicle relationship: part_of UBERON:0001893 {source="EHDAA2"} ! telencephalon [Term] id: UBERON:0009731 name: sublaminar layers S3 or S4 namespace: uberon def: "One of sublaminar layers S3 or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009732 name: sublaminar layers S1 or S2 or S5 namespace: uberon def: "One of sublaminar layers S1, S2, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001041 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009733 name: sublaminar layers S1 or S2 or S3 namespace: uberon def: "One of sublaminar layers S1, S2, or S3." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001042 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009734 name: sublaminar layers S2 or S3 or S4 namespace: uberon def: "One of sublaminar layers S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001043 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009735 name: sublaminar layers S1 or S3 or S4 namespace: uberon def: "One of sublaminar layers S1, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001044 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009736 name: sublaminar layers S3 or S4 or S5 namespace: uberon def: "One of sublaminar layers S3, S4, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001045 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009737 name: sublaminar layers S1 or S2 or S3 or S4 namespace: uberon def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001046 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009738 name: border of sublaminar layers S1 and S2 namespace: uberon def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] xref: CP:0001038 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009739 name: border of sublaminar layers S3 and S4 namespace: uberon def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] xref: CP:0001039 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009740 name: border between sublaminar layers namespace: uberon def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0009758 name: abdominal ganglion namespace: uberon def: "A ganglion that is part of a abdominal segment of trunk." [OBOL:automatic] xref: SCTID:280508003 is_a: UBERON:0007134 ! trunk ganglion [Term] id: UBERON:0009775 name: lateral medullary reticular complex namespace: uberon def: "A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal[WP,modified]." [Wikipedia:Lateral_reticular_nucleus] comment: The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis[WP] synonym: "lateral group of medullary reticular formation" EXACT [FMA:72573] synonym: "lateral medullary reticular group" EXACT [FMA:72573] synonym: "lateral reticular formation of the medulla oblongata" EXACT [FMA:72573] synonym: "nuclei laterales myelencephali" EXACT OMO:0003011 [FMA:72573, FMA:TA] xref: BAMS:LMRt xref: FMA:72573 xref: HBA:9613 xref: neuronames:726 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation [Term] id: UBERON:0009776 name: intermediate reticular formation namespace: uberon synonym: "intermediate reticular formations" RELATED OMO:0003004 [ZFA:0000219] xref: TAO:0000219 xref: ZFA:0000219 is_a: UBERON:0007245 {source="https://orcid.org/0000-0002-6601-2165"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="GOC:pr", source="brainspan.org"} ! medullary reticular formation property_value: IAO:0000233 "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855" xsd:anyURI [Term] id: UBERON:0009777 name: intermediate reticular nucleus namespace: uberon def: "A nucleus of brain that is part of a intermediate reticular formation." [OBOL:automatic] xref: BAMS:IRN xref: BAMS:IRt xref: DHBA:12620 xref: FMA:84336 xref: MBA:136 xref: neuronames:1114 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0009776 ! intermediate reticular formation [Term] id: UBERON:0009834 name: dorsolateral prefrontal cortex namespace: uberon def: "The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 - 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas." [Wikipedia:Dorsolateral_prefrontal_cortex] xref: DHBA:10173 xref: FMA:276189 xref: Wikipedia:Dorsolateral_prefrontal_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex property_value: IAO:0000116 "check dorsolateral prefrontal neocortex" xsd:string [Term] id: UBERON:0009835 name: anterior cingulate cortex namespace: uberon def: "The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. Wikipedia:File:Gray727.svg." [BIRNLEX:936] synonym: "ACC" RELATED OMO:0003000 [BTO:0004249] xref: BIRNLEX:936 xref: BTO:0004249 xref: FMA:271599 xref: Wikipedia:Anterior_cingulate_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png" xsd:anyURI [Term] id: UBERON:0009836 name: fronto-orbital gyrus namespace: uberon synonym: "fronto-orbital gyrus" EXACT [BIRNLEX:1243] synonym: "gyrus fronto-orbitalis" RELATED OMO:0003011 [NeuroNames:90] synonym: "orbito-frontal gyrus" EXACT [] synonym: "orbitofrontal gyrus" EXACT [] xref: BAMS:FOG xref: BAMS:OFG xref: BIRNLEX:1243 xref: neuronames:90 {source="BIRNLEX:1243"} xref: UMLS:C0262239 {source="BIRNLEX:1243"} is_a: UBERON:0007193 {source="NIF"} ! orbital gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0009840 name: lower rhombic lip namespace: uberon def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] subset: pheno_slim synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lower (caudal) rhombic lip" EXACT [] xref: DHBA:10666 xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] id: UBERON:0009841 name: upper rhombic lip namespace: uberon def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator] subset: pheno_slim synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] synonym: "rostral rhombic lip" EXACT [DHB:URL] synonym: "upper (rostral) rhombic lip" EXACT [] xref: DHBA:10665 xref: EHDAA2:0000229 xref: TAO:0001442 xref: ZFA:0001442 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0005499 {source="ZFA"} ! rhombomere 1 relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] id: UBERON:0009848 name: zona limitans intrathalamica namespace: uberon def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] synonym: "MDO" RELATED OMO:0003000 [Wikipedia:Thalamus] synonym: "mid-diencephalic organizer" RELATED [Wikipedia:Thalamus] synonym: "ZLI" EXACT OMO:0003000 [GO:0022006] synonym: "ZLI organizer" RELATED [Wikipedia:Thalamus] xref: EMAPA:36604 xref: TAO:0001344 xref: Wikipedia:Zona_limitans_intrathalamica xref: XAO:0004305 xref: ZFA:0001344 relationship: part_of UBERON:0001897 {source="ZFA"} ! dorsal plus ventral thalamus property_value: IAO:0000116 "Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17" xsd:string property_value: UBPROP:0000001 "The border between the dorsal and ventral thalamus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001344", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0009851 name: border of sublaminar layers S4 and S5 namespace: uberon def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009852 name: border of sublaminar layers S2 and S3 namespace: uberon def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009857 name: cavum septum pellucidum namespace: uberon def: "A space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum." [BTO:0003447, Wikipedia:Cave_of_septum_pellucidum] synonym: "cave of septum pellucidum" EXACT [FMA:61874] synonym: "cavum of septum pellucidum" EXACT [FMA:61874] synonym: "cavum septi pellucidi" RELATED OMO:0003011 [Wikipedia:Cave_of_septum_pellucidum] synonym: "fifth ventricle" RELATED [FMA:61874, Wikipedia:Cave_of_septum_pellucidum] synonym: "septum pellucidum cave" EXACT [FMA:61874] synonym: "ventriculus septi pellucidi" EXACT [FMA:61874] xref: BAMS:CSP xref: BTO:0003447 xref: DHBA:12099 xref: FMA:61874 xref: NCIT:C32602 xref: neuronames:257 xref: SCTID:180933005 xref: UMLS:C0228158 {source="ncithesaurus:Fifth_Ventricle"} xref: Wikipedia:Cave_of_septum_pellucidum relationship: part_of UBERON:0004714 ! septum pellucidum property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/CavumSeptumPellucidumDiagram.jpg" xsd:anyURI property_value: UBPROP:0000008 "In humans, present in 100% of fetuses, but over 85% of them fuse by 3-6 months after birth" xsd:string [Term] id: UBERON:0009897 name: right auditory cortex namespace: uberon def: "An auditory cortex that is in the left side of a brain." [OBOL:automatic] xref: FMA:242654 is_a: UBERON:0001393 ! auditory cortex property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009898 name: left auditory cortex namespace: uberon def: "An auditory cortex that is in the right side of a brain." [OBOL:automatic] xref: FMA:242656 is_a: UBERON:0001393 ! auditory cortex property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0009899 name: pole of cerebral hemisphere namespace: uberon def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [Wikipedia:Poles_of_cerebral_hemispheres] xref: Wikipedia:Poles_of_cerebral_hemispheres is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI [Term] id: UBERON:0009906 name: root of optic nerve namespace: uberon def: "A nerve root that extends_fibers_into a nerve connecting eye with brain." [OBOL:automatic] synonym: "optic nerve root" EXACT [BIRNLEX:1328] synonym: "optic tract root" EXACT [FMA:84573] synonym: "root of optic tract" EXACT [FMA:84573] xref: BIRNLEX:1328 xref: FMA:84573 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve property_value: IAO:0000116 "TODO - check. See comments for optic tract. FMA also has medial root." xsd:string [Term] id: UBERON:0009907 name: sensory root of trigeminal nerve namespace: uberon synonym: "radix sensoria (nervus trigeminus [v])" EXACT [FMA:52611] synonym: "radix sensoria nervus trigemini" EXACT OMO:0003011 [FMA:52611, FMA:TA] synonym: "sensory root of the trigeminal nerve" RELATED [BAMS:s5, BAMS:sV] xref: BAMS:s5 xref: BAMS:sV xref: DHBA:12867 xref: FMA:52611 xref: MBA:229 xref: neuronames:1403 xref: SCTID:280188009 is_a: UBERON:0004673 {source="FMA"} ! trigeminal nerve root [Term] id: UBERON:0009908 name: caudal root of abducens nerve namespace: uberon synonym: "radix caudalis nervi abducentis" EXACT [ZFA:0000179] xref: TAO:0000179 xref: ZFA:0000179 is_a: UBERON:0002786 ! root of abducens nerve [Term] id: UBERON:0009909 name: rostral root of abducens nerve namespace: uberon xref: TAO:0000665 xref: ZFA:0000665 is_a: UBERON:0002786 ! root of abducens nerve [Term] id: UBERON:0009918 name: retrotrapezoid nucleus namespace: uberon def: "The loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain." [MP:0011406] subset: pheno_slim xref: DHBA:12531 xref: DMBA:17327 xref: MA:0003022 is_a: UBERON:0000125 {source="cjm"} ! neural nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="MP"} ! medulla oblongata [Term] id: UBERON:0009950 name: olfactory bulb plexiform layer namespace: uberon synonym: "plexiform layer" BROAD [NLXANAT:20090405] xref: NLXANAT:20090405 is_a: UBERON:0004001 {source="NIFSTD"} ! olfactory bulb layer property_value: IAO:0000116 "check if the NIF class is actually a grouping class" xsd:string [Term] id: UBERON:0009951 name: main olfactory bulb namespace: uberon def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb] xref: BAMS:MOB xref: MBA:507 xref: MESH:D009830 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: Wikipedia:Olfactory_bulb#Main_olfactory_bulb is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb property_value: RO:0002171 UBERON:0002266 {source="ABA"} property_value: RO:0002171 UBERON:0002590 {source="ABA"} property_value: RO:0002171 UBERON:0002893 {source="ABA"} property_value: RO:0002171 UBERON:0004069 {source="ABA"} property_value: UBPROP:0000012 "the structure in many ontologies called simply 'olfactory bulb' may in fact belong here" xsd:string [Term] id: UBERON:0009952 name: dentate gyrus subgranular zone namespace: uberon def: "A narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs." [Wikipedia:Subgranular_zone] synonym: "SGZ" BROAD OMO:0003000 [] synonym: "subgranular zone" EXACT [] synonym: "subgranular zone of dentate gyrus" EXACT [] xref: EMAPA:35831 xref: MA:0003149 xref: MBA:10702 xref: Wikipedia:Subgranular_zone relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/Doublecortin_expression-2.png" xsd:anyURI [Term] id: UBERON:0009968 name: primitive superior sagittal sinus namespace: uberon xref: EHDAA2:0001527 xref: EHDAA:9876 xref: EMAPA:18636 relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus property_value: IAO:0000116 "consider merging into developed structure" xsd:string [Term] id: UBERON:0009969 name: statoacoustic epithelium namespace: uberon synonym: "stato-acoustic epithelium" EXACT [FMA:64804] xref: FMA:64804 is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium [Term] id: UBERON:0009975 name: remnant of lumen of Rathke's pouch namespace: uberon synonym: "adenohypophysis invagination" RELATED [EHDAA2:0004139] xref: EHDAA2:0004139 relationship: part_of UBERON:0002196 ! adenohypophysis property_value: IAO:0000116 "requires review" xsd:string [Term] id: UBERON:0009992 name: cranial sensory ganglion namespace: uberon def: "The ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons." [http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion] comment: ontology notes: has no subtypes in FMA synonym: "cranial nerve sensory ganglion" EXACT [FMA:5887] synonym: "ganglion sensorium cranialium" EXACT [FMA:5887] synonym: "ganglion sensorium nervi cranialis" EXACT OMO:0003011 [FMA:5887, FMA:TA] synonym: "sensory ganglion of cranial nerve" EXACT [FMA:5887] xref: FMA:5887 is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion is_a: UBERON:0001800 {source="FMA"} ! sensory ganglion [Term] id: UBERON:0010009 name: aggregate regional part of brain namespace: uberon def: "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NLXANAT:20090509] subset: non_informative synonym: "set of nuclei of neuraxis" RELATED [FMA:256381] xref: NLXANAT:20090509 relationship: part_of UBERON:0000955 ! brain property_value: IAO:0000116 "May be obsoleted." xsd:string [Term] id: UBERON:0010010 name: basal nucleus of telencephalon namespace: uberon def: "A group of neurons in the basal forebrain that has wide projections to the neocortex and is rich in acetylcholine and choline acetyltransferase. It undergoes degeneration in paralysis agitans and Alzheimer's disease." [BTO:0001480] synonym: "basal forebrain nucleus" RELATED [NeuroNames:275] synonym: "basal magnocellular nucleus" RELATED [NeuroNames:275] synonym: "basal magnocellular nucleus (substantia innominata)" EXACT [FMA:61887] synonym: "basal nuclei of Meynert" EXACT [FMA:61887] synonym: "basal nucleus" EXACT [BIRNLEX:1107] synonym: "basal nucleus (Meynert)" RELATED [BAMS:B] synonym: "basal nucleus of Meynert" EXACT [FMA:61887] synonym: "basal substance of telencephalon" EXACT [FMA:61887] synonym: "ganglion of Meynert" EXACT [FMA:61887] synonym: "magnocellular nucleus of the pallidum" RELATED [NeuroNames:275] synonym: "magnocellular preoptic nucleus" RELATED [NeuroNames:275] synonym: "Meynert's nucleus" EXACT [FMA:61887] synonym: "nucleus basalis" EXACT [BIRNLEX:1107] synonym: "nucleus basalis (Meynert)" RELATED OMO:0003011 [NeuroNames:275] synonym: "nucleus basalis Meynert" RELATED OMO:0003011 [NeuroNames:275] synonym: "nucleus basalis of Meynert" EXACT [BIRNLEX:1107] synonym: "nucleus basalis telencephali" RELATED OMO:0003011 [Wikipedia:Nucleus_basalis_of_Meynert] synonym: "nucleus of the horizontal limb of the diagonal band (Price-Powell)" RELATED [NeuroNames:275] synonym: "substantia basalis telencephali" EXACT OMO:0003011 [FMA:TA] xref: BAMS:MA xref: BAMS:MCPO xref: BIRNLEX:1107 xref: BTO:0001480 xref: DHBA:10353 xref: FMA:61887 xref: HBA:4308 xref: MESH:D020532 xref: neuronames:275 {source="BIRNLEX:1107"} xref: PBA:10141 xref: SCTID:369109003 xref: UMLS:C0004788 {source="BIRNLEX:1107"} xref: Wikipedia:Basal_optic_nucleus_of_Meynert xref: Wikipedia:Nucleus_basalis_of_Meynert is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0003017 {source="WP"} ! substantia innominata property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG" xsd:anyURI property_value: UBPROP:0000009 "rich in acetylcholine and choline acetyltransferase" xsd:string {source="WP"} property_value: UBPROP:0000012 "MA has basal nucleus as synonym for BG." xsd:string {external_ontology="MA"} property_value: UBPROP:0000015 "The NBM is inferior to the globus pallidus and within an area known as the substantia innominata" xsd:string [Term] id: UBERON:0010011 name: collection of basal ganglia namespace: uberon def: "Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum." [BIRNLEX:826] subset: human_reference_atlas subset: pheno_slim synonym: "basal ganglia" EXACT [FMA:84013] synonym: "basal ganglia set" EXACT [FMA:84013] synonym: "basal nuclei" RELATED [] synonym: "basal nuclei (basal ganglia)" EXACT [PBA:BN] synonym: "cerebral nuclei" RELATED [NeuroNames:2677] synonym: "set of basal ganglia" EXACT [FMA:84013] synonym: "set of basal nuclei" RELATED [FMA:84013] synonym: "subcortical nuclei" RELATED [NeuroNames:2677] xref: BAMS:BG xref: BIRNLEX:826 xref: BM:Tel-BG xref: EMAPA:32673 xref: FMA:84013 xref: GAID:617 xref: HBA:4276 xref: MA:0000184 xref: MBA:623 xref: MESH:D001479 xref: NCIT:C12447 xref: neuronames:2677 xref: PBA:4001 xref: UMLS:C0004781 {source="ncithesaurus:Basal_Ganglia"} xref: VHOG:0001696 xref: Wikipedia:Basal_ganglia is_a: UBERON:0010009 {source="FMA"} ! aggregate regional part of brain relationship: part_of UBERON:0000454 {source="FMA"} ! cerebral subcortex property_value: IAO:0000116 "it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000003 "All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001696", ontology="VHOG", source="DOI:10.1016/j.cub.2011.05.001 Stephenson-Jones M, Samuelsson E, Ericsson J, Robertson B, Grillner S, Evolutionary conservation of the basal ganglia as a common vertebrate mechanism for action selection. Current Biology (2011)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0010036 name: anterior tegmental nucleus namespace: uberon def: "A group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 )." [neuronames:1115] xref: BAMS:AT xref: BAMS:ATg xref: DMBA:17008 xref: EMAPA:37416 {source="MA:th"} xref: MA:0001055 xref: MBA:231 xref: neuronames:1115 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001891 {source="ABA", source="MA"} ! midbrain [Term] id: UBERON:0010091 name: future hindbrain meninx namespace: uberon def: "A multi-tissue structure that has the potential to develop into a meninx of hindbrain." [OBOL:automatic] synonym: "future hindbrain meninges" EXACT [EHDAA2:0000610] xref: EHDAA2:0000610 is_a: UBERON:0007645 ! future meninx relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010092 name: future metencephalon namespace: uberon def: "A developing anatomical structure that has the potential to develop into a metencephalon." [OBOL:automatic] xref: EHDAA2:0000623 relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010096 name: future myelencephalon namespace: uberon def: "A developing anatomical structure that has the potential to develop into a myelencephalon." [OBOL:automatic] xref: EHDAA2:0000640 relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010123 name: future facial nucleus namespace: uberon def: "A gray matter that has the potential to develop into a facial nucleus." [OBOL:automatic] xref: EHDAA2:0004639 is_a: UBERON:0002020 ! gray matter [Term] id: UBERON:0010124 name: future inferior salivatory nucleus namespace: uberon def: "A gray matter that has the potential to develop into a inferior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004643 is_a: UBERON:0002020 ! gray matter property_value: IAO:0000116 "TODO - devfrom" xsd:string [Term] id: UBERON:0010125 name: future superior salivatory nucleus namespace: uberon def: "A gray matter that has the potential to develop into a superior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004644 is_a: UBERON:0002020 ! gray matter [Term] id: UBERON:0010126 name: future nucleus ambiguus namespace: uberon def: "A gray matter that has the potential to develop into a nucleus ambiguus." [OBOL:automatic] xref: EHDAA2:0004647 is_a: UBERON:0002020 ! gray matter [Term] id: UBERON:0010128 name: future pterygopalatine ganglion namespace: uberon def: "A ganglion that has the potential to develop into a pterygopalatine ganglion." [OBOL:automatic] synonym: "future Meckel ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future Meckel's ganglion" EXACT [FMA:6965, OBOL:automatic] synonym: "future nasal ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future palatine ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future pterygopalatine ganglia" EXACT [MP:0008314, OBOL:automatic] synonym: "future sphenopalatine ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0000673, EHDAA2:0001889, OBOL:automatic] xref: EHDAA2:0000673 is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0001808 {source="EHDAA2"} ! parasympathetic ganglion [Term] id: UBERON:0010134 name: secretory circumventricular organ namespace: uberon def: "A circumventricular organ that is capable of secreting substances into the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: EMAPA:35759 xref: MA:0002943 xref: neuronames:2857 is_a: UBERON:0005408 {source="MA"} ! circumventricular organ [Term] id: UBERON:0010135 name: sensory circumventricular organ namespace: uberon def: "A circumventricular organ that is capable of monitoring the levels of substances to the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "humerosensory circumventricular organ" RELATED [] synonym: "humerosensory system" RELATED OMO:0003004 [NeuroNames:2856] synonym: "humerosensory system organ" RELATED [] synonym: "sensitive circumventricular organs" RELATED OMO:0003004 [NeuroNames:2856] synonym: "sensitive organs" RELATED OMO:0003004 [NeuroNames:2856] synonym: "sensory circumventricular organs" RELATED [NeuroNames:2856] synonym: "sensory CVOs" RELATED OMO:0003004 [NeuroNames:2856] xref: EMAPA:37741 {source="MA:th"} xref: MA:0002944 xref: neuronames:2856 is_a: UBERON:0005408 ! circumventricular organ [Term] id: UBERON:0010225 name: thalamic complex namespace: uberon def: "A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]." [Wikipedia:Thalamus#Thalamic_nuclei] xref: EHDAA2:0004469 xref: FMA:258745 is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0001894 {source="EHDAA2"} ! diencephalon [Term] id: UBERON:0010245 name: retinal tapetum lucidum namespace: uberon def: "A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] xref: Wikipedia:Tapetum_lucidum#Classification relationship: part_of UBERON:0000966 ! retina property_value: RO:0002175 NCBITaxon:30559 {editor="cjm", source="PMID:14738502"} property_value: RO:0002175 NCBITaxon:32443 {editor="cjm", source="PMID:14738502"} property_value: RO:0002175 NCBITaxon:8493 {editor="cjm", source="PMID:14738502"} property_value: RO:0002175 NCBITaxon:9263 {editor="cjm", source="PMID:14738502"} property_value: UBPROP:0000008 "as seen in teleosts, crocodiles, marsupials and fruit bats" xsd:string {source="WP"} property_value: UBPROP:0000008 "In crocodilians, a semicircular area of the retinal epithelium in the superior fundus shows a fair sulfur yellow coloration and is specialized as a tapetum lucidum." xsd:string {source="PMID:14738502", taxon="NCBITaxon:8493"} property_value: UBPROP:0000008 "In the tapetal area, no melanosomes are formed indicating a nonocclusible tapetum in the Caiman sclerops." xsd:string {source="PMID:14738502", taxon="NCBITaxon:8499"} property_value: UBPROP:0000008 "Retinal tapeta lucida are common in fish and some reptiles, but rarely occur in mammals. In most of these species the retinal tapetum can be classified as either a lipid (in some teleosts, mammals) or guanine type (in some teleosts, reptiles). Another differentiation can be made among the retinal tapeta lucida based on whether the tapetum is occlusible (found in most of teleosts), or nonocclusible (or static) (found in mammals)" xsd:string {source="PMID:14738502"} property_value: UBPROP:0000008 "the tapetum lucidum is an integral part of the pigment epithelium in primitive teleosts (lying in the pro- cesses of the pigmented epithelial cells). It can vary in chemical nature." xsd:string {source="PMID:14738502", taxon="NCBITaxon:32443"} [Term] id: UBERON:0010262 name: operculum of brain namespace: uberon def: "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery[WP]." [Wikipedia:Operculum_(brain)] subset: pheno_slim synonym: "operculum" BROAD [HP:0100954] xref: SCTID:362351003 xref: Wikipedia:Operculum_(brain) is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 ! frontal lobe property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png" xsd:anyURI [Term] id: UBERON:0010269 name: filum terminale internum namespace: uberon synonym: "internal part of filum terminale" EXACT [FMA:256524] xref: FMA:256524 xref: SCTID:315673007 relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] id: UBERON:0010270 name: filum terminale externum namespace: uberon synonym: "external part of filum terminale" EXACT [FMA:256526] xref: FMA:256526 xref: SCTID:315573001 relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] id: UBERON:0010285 name: midbrain basal plate namespace: uberon def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ZFA:0000761] subset: efo_slim synonym: "basal plate midbrain" EXACT [TAO:0000761] synonym: "basal plate midbrain region" EXACT [ZFA:0000761] xref: DHBA:12322 xref: EFO:0003567 xref: EHDAA2:0004375 xref: TAO:0000761 xref: ZFA:0000761 is_a: UBERON:0002020 {source="EHDAA2"} ! gray matter relationship: part_of UBERON:0009581 {source="EHDAA2"} ! midbrain mantle layer [Term] id: UBERON:0010287 name: motor root of facial nerve namespace: uberon synonym: "facial nerve motor root" EXACT [FMA:53419] synonym: "motor component of the VIIth (facial) nerve" EXACT [] synonym: "seventh cranial nerve motor root" EXACT [FMA:53419] xref: DHBA:12863 xref: FMA:53419 xref: SCTID:280191009 is_a: UBERON:0004674 {source="FMA"} ! facial nerve root [Term] id: UBERON:0010380 name: enteric nerve namespace: uberon def: "The neurons that innervate the esophagus, stomach, small and large bowel." [MGI:csmith, MP:0001046] subset: pheno_slim xref: EMAPA:37479 {source="MA:th"} xref: MA:0001145 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0010403 name: brain marginal zone namespace: uberon def: "The part of the future brain that is derived from the mantle layer of the neural tube." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "brain marginal zone" BROAD [MA:0000812] xref: DHBA:10508 xref: EMAPA:32680 xref: MA:0000812 relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000012 "not clear if the MA/EMAPA classes refer specifically to the cortical subset. DHBA class incldues non-neocortex derivatives so it belongs here" xsd:string {external_ontology="MA"} [Term] id: UBERON:0010404 name: lateral ventricle subependymal layer namespace: uberon def: "A cell layer below the ependyma in the lateral ventricles of the brain. This region contains adult neural stem cells which have the potential to generate new neurons and glial cells via neurogenesis. It is an adult version of the embryonic forebrain germinal zone." [Wikipedia:Subependymal_zone] subset: pheno_slim xref: EMAPA:35489 xref: MA:0000965 xref: Wikipedia:Subependymal_zone relationship: part_of UBERON:0002285 {source="MA"} ! telencephalic ventricle relationship: part_of UBERON:0004922 {source="Wikipedia"} ! postnatal subventricular zone [Term] id: UBERON:0010405 name: spinal cord lateral motor column namespace: uberon def: "Column of motor neurons which innervate muscles in the limb; motor neurons in the lateral motor column are further organized into pools, each of which innervates a specific muscle in the limb." [MP:MP] subset: pheno_slim xref: MA:0001129 is_a: UBERON:0003990 ! spinal cord motor column is_a: UBERON:0005374 ! spinal cord lateral column [Term] id: UBERON:0010406 name: cholinergic enteric nerve namespace: uberon def: "Nerve fibers that utilize acetylcholine as a neurotransmitter to the intestinal system." [MP:0001049] subset: pheno_slim xref: EMAPA:37480 {source="MA:th"} xref: MA:0001146 is_a: UBERON:0010380 ! enteric nerve [Term] id: UBERON:0010415 name: barrel cortex namespace: uberon def: "One of the discrete functional units of the somatosensory cortex that processes tactile information derived from the vibrissae." [MP:0003989] subset: pheno_slim synonym: "barrel cortex" RELATED [NeuroNames:2703] synonym: "barrel field" RELATED [NeuroNames:2703] synonym: "barrel field of the primary somatosensory area" RELATED [NeuroNames:2703] synonym: "barrel field sensory area" RELATED [NeuroNames:2703] synonym: "primary somatosensory area barrel field" RELATED [BAMS:SS-bfd, BAMS:SSp-bfd] synonym: "primary somatosensory area, barrel field" RELATED [ABA:SSp-bfd, NeuroNames:2703] synonym: "primary somatosensory cortex, barrel field" RELATED [NeuroNames:2703] synonym: "whisker barrels" RELATED [NeuroNames:2703] synonym: "whisker sensory area" RELATED [NeuroNames:2703] xref: BAMS:SS-bfd xref: BAMS:SSp-bfd xref: EMAPA:35163 xref: MA:0002712 xref: MBA:329 xref: neuronames:2703 xref: NLX:81 is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: part_of UBERON:0008933 {source="MBA"} ! primary somatosensory cortex property_value: UBPROP:0000001 "The term primary somatosensory area, barrel field refers to one of 6 subdivisions of the primary somesthetic area of the cerebral cortex in the mouse (Dong-2004) and the rat (Swanson-2004). It is defined as dark-staining regions in Nissl and other types of stains of layer four of the somatosensory cortex of rodents where somatosensory inputs from the contralateral side of the body come in from the thalamus, in particular input from the whiskers. Each barrel ranges in size from 100-400 um in diameter. (modified from BrainInfo and Wikipedia)" xsd:string {source="NLX:81"} [Term] id: UBERON:0010505 name: periosteal dura mater namespace: uberon def: "The outermost of the two layers of the cranial dura mater which normally always adheres to the periosteum of the bones of the cranial vault." [https://orcid.org/0000-0002-6601-2165] synonym: "endosteal layer of dura mater" RELATED [FMA:231547] synonym: "outer layer of dura mater" EXACT [FMA:231547] synonym: "outer periosteal layer of dura mater" EXACT [] synonym: "periosteal dura" EXACT [FMA:231547] synonym: "periosteal layer of dura mater" EXACT [FMA:231547] xref: FMA:231547 xref: NCIT:C33306 xref: UMLS:C1518991 {source="ncithesaurus:Periosteal_Layer_of_the_Dura_Mater"} is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater relationship: part_of UBERON:0002092 ! brain dura mater property_value: RO:0002171 UBERON:0010506 [Term] id: UBERON:0010506 name: meningeal dura mater namespace: uberon def: "The inner layer of the dura mater surrounding the brain. It is mostly fused with the outer layer, the endocranium that is adherent to the inner aspect of the cranial bones. These two layers form the dura mater. The latter covers and protects the brain and the spinal cord." [ncithesaurus:Meningeal_Layer_of_the_Dura_Mater] synonym: "inner layer of dura mater" EXACT [FMA:231549] synonym: "meningeal dura" EXACT [FMA:231549] synonym: "meningeal layer of dura mater" EXACT [FMA:231549] xref: FMA:231549 xref: NCIT:C33093 xref: UMLS:C1513121 {source="ncithesaurus:Meningeal_Layer_of_the_Dura_Mater"} is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater property_value: IAO:0000116 "not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area" xsd:string [Term] id: UBERON:0010507 name: layer of dura mater namespace: uberon def: "The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space." [http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater] xref: FMA:231545 relationship: part_of UBERON:0002363 {source="FMA"} ! dura mater property_value: IAO:0000116 "not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area" xsd:string [Term] id: UBERON:0010743 name: meningeal cluster namespace: uberon def: "The collection of all meningeal layers that line a central nervous system." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "cerebral meninges" EXACT [] synonym: "cluster of meninges" EXACT [FMA:231572] synonym: "meninges" EXACT [FMA:231572] xref: EHDAA2:0004661 xref: FMA:231572 xref: NCIT:C12349 xref: neuronames:1465 xref: SCTID:362879001 xref: UMLS:C0228116 xref: Wikipedia:Meninges relationship: part_of UBERON:0001017 ! central nervous system property_value: UBPROP:0000007 "meningeal" xsd:string property_value: UBPROP:0000008 "In some primitive organisms, the meningeal cluster includes only the primitive meninx" xsd:string [Term] id: UBERON:0011096 name: lacrimal nerve namespace: uberon def: "The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve." [Wikipedia:Lacrimal_nerve] subset: human_reference_atlas synonym: "nervus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_nerve] xref: FMA:52628 xref: NCIT:C32908 xref: SCTID:280218007 xref: Wikipedia:Lacrimal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000348 ! ophthalmic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011155 name: Sylvian cistern namespace: uberon def: "The subarachnoid space associated with the lateral cerebral sulcus (Sylvian fissure); contains the M1 segment of the middle cerebral artery and the origin of lenticulostriate arteries, and proximal parts of the middle cerebral artery." [http://www.mondofacto.com/facts/dictionary?Sylvian+cistern] xref: NCIT:C33714 xref: UMLS:C1515104 {source="ncithesaurus:Sylvian_Cistern"} is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0011172 name: retrorubral area of midbrain reticular nucleus namespace: uberon def: "The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus." [NLXANAT:20090301] synonym: "A8" BROAD [NLXANAT:20090301] synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] synonym: "area orbitalis interna" RELATED OMO:0003011 [NeuroNames:1036] synonym: "brodmann's area 11" RELATED [NeuroNames:1036] synonym: "midbraiin reticular nucleus, retrorubral area" RELATED [BAMS:RR] synonym: "midbrain reticular nucleus, retrorubral area" EXACT [ABA:RR] synonym: "retrorubal field" BROAD [http://braininfo.rprc.washington.edu/] synonym: "retrorubral area" EXACT [NLXANAT:20090301] synonym: "retrorubral field" RELATED [BAMS:RR] synonym: "retrorubral nucleus" RELATED [BAMS:RR] xref: BAMS:RR xref: DHBA:12289 xref: DMBA:16884 xref: MBA:246 xref: neuronames:1036 {source="NLXANAT:20090301"} xref: NLXANAT:20090301 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0007415 {source="Obol"} ! nucleus of midbrain reticular formation [Term] id: UBERON:0011173 name: anterior division of bed nuclei of stria terminalis namespace: uberon def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis." [neuronames:2753] synonym: "anterior division" BROAD [MA:0000926] synonym: "anterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu] synonym: "anterior part of the bed nucleus of the stria terminalis" RELATED [BAMS:BSTa] synonym: "bed nuclei of the stria terminalis anterior division" RELATED [BAMS:BSTa] synonym: "bed nuclei of the stria terminalis, anterior division" EXACT [ABA:BSTa] synonym: "bed nuclei of the stria terminals anterior division" RELATED [BAMS:BSTa] synonym: "bed nucleus of the stria terminalis anterior division" RELATED [BAMS:BSTa] synonym: "bed nucleus of the stria terminalis anterior part" RELATED [BAMS:BSTa] synonym: "bed nucleus of thestria terminalis anterior division" RELATED [BAMS:BSTa] xref: BAMS:BSTa xref: EMAPA:37407 {source="MA:th"} xref: MA:0000926 xref: MBA:359 xref: neuronames:2753 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis [Term] id: UBERON:0011175 name: fusiform nucleus of stria terminalis namespace: uberon def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model -Rat ( Swanson-2004 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218] synonym: "bed nuclei of the stria terminalis anterior division fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nuclei of the stria terminalis fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nuclei of the stria terminalis, anterior division, fusiform nucleus" EXACT [ABA:BSTfu] synonym: "bed nuclei of the stria terminals anterior division fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nucleus of the stria terminalis fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nucleus of the stria terminalis fusiform part" RELATED [BAMS:BSTfu] synonym: "fusiform nucleus" BROAD [MA:0000927] xref: BAMS:BSTfu xref: EMAPA:37591 {source="MA:th"} xref: MA:0000927 xref: MBA:513 xref: neuronames:3218 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011176 name: oval nucleus of stria terminalis namespace: uberon def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004)." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214] synonym: "bed nuclei of the stria terminalis, anterior division, oval nucleus" EXACT [ABA:BSTov] synonym: "oval nucleus" EXACT [MA:0000929] xref: EMAPA:37667 {source="MA:th"} xref: MA:0000929 xref: MBA:554 xref: neuronames:3214 xref: NLX:77783 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011177 name: posterior division of bed nuclei of stria terminalis namespace: uberon def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis." [neuronames:2754] synonym: "bed nuclei of the stria terminalis posterior division" RELATED [BAMS:BSTp] synonym: "bed nuclei of the stria terminalis, posterior division" EXACT [ABA:BSTp] synonym: "bed nucleus of stria terminalis posterior part" RELATED [BAMS:BSTp] synonym: "bed nucleus of the stria terminalis posterior division" RELATED [BAMS:BSTp] synonym: "posterior division" BROAD [MA:0000930] synonym: "posterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu] synonym: "posterior part of the bed nucleus of the stria terminalis" RELATED [BAMS:BSTp] xref: BAMS:BSTp xref: EMAPA:37408 {source="MA:th"} xref: MA:0000930 xref: MBA:367 xref: neuronames:2754 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis [Term] id: UBERON:0011178 name: principal nucleus of stria terminalis namespace: uberon def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat ( Swanson-2004 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221] synonym: "bed nuclei of the stria terminalis posterior division principal nucleus" RELATED [BAMS:BSTpr] synonym: "bed nuclei of the stria terminalis principal nucleus" RELATED [BAMS:BSTpr] synonym: "bed nuclei of the stria terminalis, posterior division, principal nucleus" EXACT [ABA:BSTpr] synonym: "bed nucleus of the stria terminalis principal (encapsulated) nucleus" RELATED [BAMS:BSTpr] synonym: "principal nucleus" BROAD [MA:0000931] xref: BAMS:BSTpr xref: EMAPA:37726 {source="MA:th"} xref: MA:0000931 xref: MBA:578 xref: neuronames:3221 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011179 name: transverse nucleus of stria terminalis namespace: uberon def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004)." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223] synonym: "bed nuclei of the stria terminalis posterior division transverse nucleus" RELATED [BAMS:BSTtr] synonym: "bed nuclei of the stria terminalis transverse nucleus" RELATED [BAMS:BSTtr] synonym: "bed nuclei of the stria terminalis, posterior division, transverse nucleus" EXACT [ABA:BSTtr] synonym: "bed nucleus of the stria terminalis transverse nucleus" RELATED [BAMS:BSTtr] synonym: "transverse nucleus" BROAD [MA:0000932] xref: BAMS:BSTtr xref: EMAPA:37727 {source="MA:th"} xref: MA:0000932 xref: MBA:594 xref: neuronames:3223 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis [Term] id: UBERON:0011194 name: ophthalmic plexus namespace: uberon def: "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus." [http://www.encyclo.co.uk/define/ophthalmic%20plexus] subset: human_reference_atlas synonym: "ophthalmic nerve plexus" EXACT [] synonym: "ophthalmic plexus" EXACT [MA:0002185] synonym: "opthalmic plexus" EXACT [] synonym: "plexus ophthalmicus" EXACT OMO:0003011 [] xref: EMAPA:37704 {source="MA:th"} xref: FMA:312377 xref: MA:0002185 xref: NCIT:C53057 xref: UMLS:C1709326 {source="ncithesaurus:Ophthalmic_Plexus"} is_a: UBERON:0001810 {source="ncithesaurus"} ! nerve plexus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011213 name: root of vagus nerve namespace: uberon def: "A root of cranial nerve that is part of a vagus nerve." [OBOL:automatic] synonym: "rootlet of vagus nerve" EXACT [FMA:6213] synonym: "rX" BROAD [ZFA:0007011] synonym: "vagal root" EXACT [ZFA:0007011] synonym: "vagus nerve root" EXACT [BIRNLEX:1456] synonym: "vagus neural rootlet" RELATED [FMA:6213] synonym: "vagus root" EXACT [ZFA:0007011] xref: BIRNLEX:1456 xref: DHBA:12888 xref: DMBA:17748 xref: FMA:6213 xref: ZFA:0007011 is_a: UBERON:0002211 ! nerve root property_value: UBPROP:0000012 "FMA distinguishes between roots and rootlets - we mix the two here" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011214 name: nucleus of midbrain tectum namespace: uberon def: "A neural nucleus that is part of a midbrain tectum." [OBOL:automatic] synonym: "nucleus of tectum" EXACT [FMA:258766] synonym: "tectal nucleus" BROAD [] xref: FMA:258766 is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0011215 name: central nervous system cell part cluster namespace: uberon def: "A multi cell part structure that is part of a central nervous system." [OBOL:automatic] subset: upper_level synonym: "cell part cluster of neuraxis" EXACT [FMA:83143] synonym: "neuraxis layer" EXACT [FMA:83143] xref: FMA:83143 relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0011299 name: white matter of telencephalon namespace: uberon alt_id: UBERON:0013202 alt_id: UBERON:0022550 def: "A partion of white matter that is part of a telencephalon. This can be further subdivided in some species, for example, into hemisphere white matter and the corpus callosum." [https://orcid.org/0000-0002-6601-2165] synonym: "predominantly white regional part of telencephalon" EXACT [BIRNLEX:1075] synonym: "telencephalic tract/commissure" EXACT [ZFA:0000597] synonym: "telencephalic tracts" NARROW [TAO:0000597] synonym: "telencephalic white matter" EXACT [HBA:TELWM] xref: BIRNLEX:1075 xref: FMA:83930 xref: HBA:9219 xref: HBA:9230 xref: TAO:0000597 xref: ZFA:0000597 is_a: UBERON:0019261 ! white matter of forebrain relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000001 "CNS white matter that is part of the telencephalon[ZFA:0000597]." xsd:string {source="ZFA:0000597"} [Term] id: UBERON:0011300 name: gray matter of telencephalon namespace: uberon alt_id: UBERON:0024186 def: "A portion of gray matter that is part of a telencephalon." [OBOL:automatic] synonym: "predominantly gray regional part of telencephalon" EXACT [BIRNLEX:1067] xref: BIRNLEX:1067 xref: FMA:83911 is_a: UBERON:0019264 ! gray matter of forebrain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0011315 name: digastric branch of facial nerve namespace: uberon def: "The digastric branch of facial nerve arises close to the stylomastoid foramen, and divides into several filaments, which supply the posterior belly of the Digastricus; one of these filaments joins the glossopharyngeal nerve." [Wikipedia:Digastric_part_of_facial_nerve] synonym: "branch of facial nerve to posterior belly of digastric" RELATED [FMA:53288] synonym: "digastric branch" BROAD [Wikipedia:Digastric_part_of_facial_nerve] synonym: "digastric branch of facial nerve (CN VII)" EXACT [FEED:FEED] synonym: "facial nerve, digastric branch" EXACT [] synonym: "nerve to posterior belly of digastric" EXACT [FMA:53288] synonym: "ramus digastricus (nervus facialis)" EXACT [FMA:53288] synonym: "ramus digastricus nervus facialis" EXACT OMO:0003011 [FMA:TA] xref: FMA:53288 xref: SCTID:17743006 xref: Wikipedia:Digastric_part_of_facial_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001647 ! facial nerve [Term] id: UBERON:0011316 name: nerve to stylohyoid from facial nerve namespace: uberon def: "The stylohyoid branch of facial nerve frequently arises in conjunction with the digastric branch; it is long and slender, and enters the Stylohyoideus about its middle." [Wikipedia:Stylohyoid_part_of_facial_nerve] synonym: "facial nerve stylohyoid branch" EXACT [FMA:53298] synonym: "nerve to stylohyoid" EXACT [FMA:53298] synonym: "ramus stylohyoideus" EXACT [FMA:53298] synonym: "ramus stylohyoideus nervus facialis" EXACT OMO:0003011 [FMA:TA] synonym: "stylodigastric nerve" EXACT [FMA:53298] synonym: "stylohyoid branch" RELATED [Wikipedia:Stylohyoid_part_of_facial_nerve] synonym: "stylohyoid branch of facial nerve" EXACT [FMA:53298] xref: FMA:53298 xref: SCTID:89590005 xref: Wikipedia:Stylohyoid_part_of_facial_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001647 ! facial nerve [Term] id: UBERON:0011317 name: nerve to stylopharyngeus from glossopharyngeal nerve namespace: uberon def: "The stylopharyngeal branch of glossopharyngeal nerve is distributed to the Stylopharyngeus." [Wikipedia:Stylopharyngeal_branch_of_glossopharyngeal_nerve] synonym: "branch of glossopharyngeal nerve to stylopharyngeus" EXACT [FMA:53487] synonym: "nerve to stylopharyngeus" EXACT [FMA:53487] synonym: "ramus musculi stylopharyngei nervus glossopharyngei" EXACT OMO:0003011 [FMA:TA] synonym: "stylopharyngeal branch of glossopharyngeal nerve" EXACT [FMA:53487] xref: FMA:53487 xref: SCTID:280294008 xref: Wikipedia:Stylopharyngeal_branch_of_glossopharyngeal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001649 ! glossopharyngeal nerve [Term] id: UBERON:0011321 name: masseteric nerve namespace: uberon def: "A muscular branch of the mandibular nerve passing to the medial surface of the masseter muscle, which it innervates." [http://medical-dictionary.thefreedictionary.com/masseteric+nerve] synonym: "nervus massetericus" EXACT OMO:0003011 [Wikipedia:Masseteric_nerve] xref: FMA:53103 xref: SCTID:280254006 xref: Wikipedia:Masseteric_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000375 ! mandibular nerve [Term] id: UBERON:0011322 name: mylohyoid nerve namespace: uberon def: "A nerve that innervates the mylohyoid muscle and the anterior belly of the digastric muscle." [Wikipedia:Mylohyoid_nerve] synonym: "branch of inferior alveolar nerve to mylohyoid" EXACT [FMA:53247] synonym: "mylodigastric nerve" EXACT [FMA:53247] synonym: "mylohyoid branch of inferior alveolar nerve" EXACT [FMA:53247] synonym: "nerve to mylohyoid" EXACT [FMA:53247] synonym: "nerve to mylohyoid" RELATED [Wikipedia:Mylohyoid_nerve] synonym: "nervus mylohyoideus" EXACT OMO:0003011 [FMA:TA, Wikipedia:Mylohyoid_nerve] xref: BAMS:myhy xref: FMA:53247 xref: SCTID:280269007 xref: Wikipedia:Mylohyoid_nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0011325 name: pharyngeal nerve plexus namespace: uberon def: "The pharyngeal plexus is a network of nerve fibers innervating most of the palate, larynx, and pharynx. It is located on the surface of the middle pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] synonym: "pharyngeal nerve plexus" EXACT [FMA:82453] synonym: "pharyngeal plexus of vagus nerve" EXACT [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] synonym: "plexus pharyngeus nervi vagi" EXACT OMO:0003011 [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] synonym: "vagus nerve pharyngeal plexus" EXACT [] xref: FMA:82453 xref: SCTID:369429008 xref: Wikipedia:Pharyngeal_plexus_of_vagus_nerve is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus [Term] id: UBERON:0011326 name: superior laryngeal nerve namespace: uberon def: "The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice." [Wikipedia:Superior_laryngeal_nerve] subset: human_reference_atlas synonym: "nervus laryngealis superior" EXACT [FMA:6239] synonym: "nervus laryngeus superior" EXACT OMO:0003011 [Wikipedia:Superior_laryngeal_nerve] synonym: "superior laryngeal branch of inferior vagal ganglion" EXACT [FMA:6239] synonym: "superior laryngeal branch of vagus" EXACT [FMA:6239] xref: BAMS:sln xref: FMA:6239 xref: SCTID:279928006 xref: Wikipedia:Superior_laryngeal_nerve is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: part_of UBERON:0001759 ! vagus nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011327 name: deep temporal nerve namespace: uberon def: "The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis." [Wikipedia:Deep_temporal_nerves] synonym: "deep temporal nerve" RELATED [Wikipedia:Deep_temporal_nerves] synonym: "nervi temporales profundi" EXACT OMO:0003004 [FMA:TA] xref: FMA:53187 xref: SCTID:280255007 xref: Wikipedia:Deep_temporal_nerves is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000375 ! mandibular nerve [Term] id: UBERON:0011357 name: Reissner's fiber namespace: uberon def: "An acellular strand that runs from subcommissural organ caudally through the ventricular system and central canal to the ampulla caudalis. Develops from glycoproteins secreted into CSF." [ISBN:0471888893, Wikipedia:Reissner's_fiber] synonym: "Reissner's fibre" EXACT [] xref: NLX:151878 xref: Wikipedia:Reissner's_fiber relationship: part_of UBERON:0001017 ! central nervous system property_value: RO:0002175 NCBITaxon:7711 {source="ISBN:0471888893"} property_value: UBPROP:0000008 "Reissner's fiber is present in the central canal of species in all chordate subphyla[Olsson R. (1993) Reissner's fiber mechanisms: some common denominators. In The Subcommissural Organ: An Ependymal Brain Gland ]" xsd:string [Term] id: UBERON:0011358 name: infundibular organ namespace: uberon comment: Resembles the subcommisural organ structurally, ultrastructurally and immunochemically[Niewenhuys] Gives rise to Reissner's fiber; however secretions are not identical to those of SCO [PMID:9550137][DOI:10.1007/BF00303086] synonym: "infundibular organ of Boeke" EXACT [] synonym: "ventral infundibular organ" EXACT [] is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001017 ! central nervous system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-6601-2165 property_value: RO:0002175 NCBITaxon:7737 {source="DOI:10.1111/j.1463-6395.1976", stage="larval"} [Term] id: UBERON:0011359 name: urophysis namespace: uberon def: "This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]." [ISBN:0471888893] comment: Shares characteristics with neurohypophysis xref: BTO:0001848 relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord property_value: RO:0002161 NCBITaxon:32523 {source="ISBN:0471888893"} [Term] id: UBERON:0011360 name: ampulla caudalis namespace: uberon def: "A ventricle-like space at the end of the central canal." [ISBN:0471888893] relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal of spinal cord [Term] id: UBERON:0011390 name: pudendal nerve namespace: uberon def: "The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord." [Wikipedia:Pudendal_nerve] subset: human_reference_atlas synonym: "internal pudendal nerve" RELATED [Wikipedia:Pudendal_nerve] synonym: "nervus pudendae" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "nervus pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "pudenal nerve" RELATED [Wikipedia:Pudendal_nerve] synonym: "pudendal" BROAD [Wikipedia:Pudendal_nerve] xref: FMA:19037 xref: MESH:D060525 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:181057000 xref: Wikipedia:Pudendal_nerve is_a: UBERON:0003444 ! pelvis nerve relationship: part_of UBERON:0000012 ! somatic nervous system property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011391 name: perineal nerve namespace: uberon def: "A nerve arising from the pudendal nerve that supplies the perineum." [Wikipedia:Perineal_nerve] synonym: "perineal branch of pudendal nerve" EXACT [FMA:21866] xref: FMA:21866 xref: SCTID:303236009 xref: Wikipedia:Perineal_nerve is_a: UBERON:0003444 ! pelvis nerve relationship: part_of UBERON:0011390 ! pudendal nerve [Term] id: UBERON:0011590 name: commissure of diencephalon namespace: uberon def: "A commissure that is part of a diencephalon." [OBOL:automatic] synonym: "diencephalon commissure" EXACT [FMA:62445] xref: FMA:62445 is_a: UBERON:0005970 ! brain commissure is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0011591 name: tract of diencephalon namespace: uberon def: "An axon tract that is part of a diencephalon." [OBOL:automatic] synonym: "diencephalon tract" EXACT [FMA:62447] xref: FMA:62447 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0011766 name: left recurrent laryngeal nerve namespace: uberon synonym: "left recurrent laryngeal branch" EXACT [EMAPA:25350] synonym: "left recurrent laryngeal nerve" EXACT [FMA:14469] synonym: "vagus X nerve left recurrent laryngeal branch" EXACT [MA:0001107] xref: EMAPA:25350 xref: FMA:14469 xref: MA:0001107 xref: SCTID:280300006 is_a: UBERON:0003716 ! recurrent laryngeal nerve property_value: http://xmlns.com/foaf/0.1/depiction "https://upload.wikimedia.org/wikipedia/commons/6/64/Recurrent_laryngeal_nerve.svg" xsd:anyURI property_value: UBPROP:0000008 "The left nerve is longer than the right, because it crosses under the arch of the aorta at the ligamentum arteriosum.[WP]" xsd:string [Term] id: UBERON:0011767 name: right recurrent laryngeal nerve namespace: uberon synonym: "right recurrent laryngeal branch" EXACT [EMAPA:17275] synonym: "right recurrent laryngeal nerve" EXACT [FMA:14468] synonym: "vagus X nerve right recurrent laryngeal branch" EXACT [MA:0001108] xref: EMAPA:17275 xref: FMA:14468 xref: MA:0001108 xref: SCTID:280299003 is_a: UBERON:0003716 ! recurrent laryngeal nerve [Term] id: UBERON:0011768 name: pineal gland stalk namespace: uberon synonym: "epiphyseal stalk" EXACT [ZFA:0001292] synonym: "habenula" RELATED [] synonym: "pineal stalk" EXACT [TAO:0001292] xref: BAMS:PIS xref: EMAPA:19036 xref: MBA:730 xref: neuronames:1966 xref: TAO:0001292 xref: VHOG:0001360 xref: ZFA:0001292 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001905 {source="EMAPA", source="VHOG"} ! pineal body property_value: IAO:0000116 "compare with habenula" xsd:string property_value: UBPROP:0000001 "The stalk emanates from the diencephalic roof at a left-of-medial position.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001292", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001292", ontology="TAO"} property_value: UBPROP:0000003 "The epithalamus contains the epiphysis (pineal gland and related structures), which is located at the end of a stalk, the epiphyseal stalk.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001360", ontology="VHOG", source="ISBN:978-0471210054 Butler AB, Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.66", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011775 name: vagus nerve nucleus namespace: uberon def: "A cranial nerve nucleus that is associated with a vagus nerve." [OBOL:automatic] synonym: "nodosal nucleus" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of vagal nerve" EXACT [] synonym: "nucleus of vagal X nerve" EXACT [] synonym: "nucleus of vagus nerve" EXACT [FMA:54573] synonym: "nucleus of Xth nerve" EXACT [] synonym: "tenth cranial nerve nucleus" EXACT [FMA:54573] synonym: "vagal nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vagal X nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vagus nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] xref: FMA:54573 xref: SCTID:362467005 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0011776 name: dorsal commissural nucleus of spinal cord namespace: uberon def: "A continuous column of gray matter along the midline in the dorsal gray commissure that sends fibers to the hypogastric nerve." [PMID:758335] synonym: "spinal cord dorsal commissural nucleus" BROAD [MA:0001128] xref: EMAPA:37748 {source="MA:th"} xref: MA:0001128 xref: NLX:144463 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0014631 ! dorsal gray commissure of spinal cord property_value: UBPROP:0000008 "The DCN may be species-specific and related to the system of short adrenergic neurons present in the pelvis." xsd:string [Term] id: UBERON:0011777 name: nucleus of spinal cord namespace: uberon def: "A neural nucleus that is part of the spinal cord." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "spinal cord nucleus" EXACT [FMA:77011] xref: FMA:77011 is_a: UBERON:0000125 ! neural nucleus relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0011778 name: motor nucleus of vagal nerve namespace: uberon synonym: "motor nucleus of X" EXACT [ZFA:0000387] synonym: "motor nucleus X" EXACT [ZFA:0000387] synonym: "nucleus motorius of nervi vagi" EXACT OMO:0003011 [ZFA:0000387] synonym: "nX" BROAD [ZFA:0000387] synonym: "vagal lobe" RELATED [ZFA:0000387] xref: ZFA:0000387 is_a: UBERON:0011775 ! vagus nerve nucleus property_value: IAO:0000232 "in ZFA this is the superclass of dorsolateral and medial (which have not been generalized above ZFA). In this ontology it is a broad grouping class covering these zebrafish structures as well as the generalized dorsal motor nucleus" xsd:string [Term] id: UBERON:0011779 name: nerve of head region namespace: uberon def: "A nerve that is part of a head." [OBOL:automatic] subset: grouping_class synonym: "cephalic nerve" RELATED [] synonym: "head nerve" RELATED [] is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0011893 name: endoneurial fluid namespace: uberon def: "Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord." [MGI:llw2, MP:0003633] subset: pheno_slim xref: EMAPA:37850 {source="MA:th"} relationship: part_of UBERON:0000123 ! endoneurium [Term] id: UBERON:0011915 name: cerebellar glomerulus namespace: uberon def: "An intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons." [ISBN:0838580343, MP:0004099] subset: pheno_slim synonym: "cerebellar glomeruli" EXACT OMO:0003004 [] xref: EMAPA:37812 {source="MA:th"} xref: NIF_Subcellular:nlx_subcell_20090502 is_a: UBERON:0001047 ! neural glomerulus relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002956 ! granular layer of cerebellar cortex [Term] id: UBERON:0011917 name: thalamic glomerulus namespace: uberon def: "Synaptic structure found in thalamic relay nuclei consising of a complex of afferent terminals, relay cell dendrites, interneuron dendrites and other processes. These complexes are surrounded by astrocytic processes." [NIF_Subcellular:nlx_subcell_20090504] synonym: "thalamic glomeruli" EXACT OMO:0003004 [] xref: NIF_Subcellular:nlx_subcell_20090504 is_a: UBERON:0001047 ! neural glomerulus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0011924 name: postganglionic autonomic fiber namespace: uberon def: "Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs." [MESH:A08.663.542.100, Wikipedia:Postganglionic_nerve_fibers] subset: human_reference_atlas synonym: "postganglionic autonomic fibre" RELATED [] synonym: "postganglionic nerve fiber" EXACT [FMA:5924] xref: FMA:5924 xref: MESH:D001338 xref: NCIT:C12648 xref: UMLS:C0004384 {source="ncithesaurus:Postganglionic_Autonomic_Fiber"} xref: Wikipedia:Postganglionic_nerve_fibers is_a: UBERON:0003041 ! trigeminal nerve fibers relationship: part_of UBERON:0034728 ! autonomic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011925 name: preganglionic autonomic fiber namespace: uberon def: "Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released." [MESH:A08.663.542.122, Wikipedia:Preganglionic_nerve_fibers] subset: human_reference_atlas synonym: "preganglionic autonomic fibre" RELATED [] synonym: "preganglionic nerve fiber" EXACT [FMA:5923] xref: FMA:5923 xref: MESH:D001339 xref: NCIT:C12624 xref: Wikipedia:Preganglionic_nerve_fibers is_a: UBERON:0003041 ! trigeminal nerve fibers relationship: part_of UBERON:0034728 ! autonomic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011926 name: postganglionic sympathetic fiber namespace: uberon def: "A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ." [MP:0008312] subset: human_reference_atlas synonym: "postganglionic sympathetic fiber" RELATED [MESH:A08.663.542.075.800] synonym: "sympathetic postganglionic fiber" RELATED [MP:0008312] xref: MESH:D017779 xref: NCIT:C12650 xref: SCTID:323617002 xref: UMLS:C0206254 {source="ncithesaurus:Postganglionic_Sympathetic_Fiber"} xref: Wikipedia:Postganglionic_fibers is_a: UBERON:0011924 ! postganglionic autonomic fiber relationship: part_of UBERON:0034729 ! sympathetic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011927 name: preganglionic sympathetic fiber namespace: uberon def: "A cholinergic axonal fiber projecting from the CNS to a sympathetic ganglion." [MP:0008310] synonym: "sympathetic preganglionic fiber" RELATED [MP:0008310] xref: SCTID:323517007 is_a: UBERON:0011925 ! preganglionic autonomic fiber relationship: part_of UBERON:0034729 ! sympathetic nerve [Term] id: UBERON:0011929 name: postganglionic parasympathetic fiber namespace: uberon def: "A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ." [MP:0008313] subset: human_reference_atlas synonym: "parasympathetic postganglionic fiber" RELATED [MP:0008313] xref: MESH:D017777 xref: NCIT:C12649 xref: UMLS:C0206252 {source="ncithesaurus:Postganglionic_Parasympathetic_Fiber"} xref: Wikipedia:Postganglionic_fibers is_a: UBERON:0011924 ! postganglionic autonomic fiber relationship: part_of UBERON:0004293 ! parasympathetic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011930 name: preganglionic parasympathetic fiber namespace: uberon def: "A cholinergic axonal fibers projecting from the CNS to a parasympathetic ganglion." [MP:0008311] synonym: "parasympathetic preganglionic fiber" RELATED [MP:0008311] xref: Wikipedia:Preganglionic_fibers is_a: UBERON:0011925 ! preganglionic autonomic fiber relationship: part_of UBERON:0004293 ! parasympathetic nerve [Term] id: UBERON:0012170 name: core of nucleus accumbens namespace: uberon subset: efo_slim synonym: "accumbens nucleus core" RELATED [BAMS:AcbC] synonym: "accumbens nucleus, core" RELATED [BAMS:AcbC] synonym: "core of nucleus accumbens" EXACT [NLXANAT:20090306] synonym: "core region of nucleus accumbens" EXACT [FMA:77383] synonym: "nucleus accumbens core" EXACT [NLXANAT:20090306] synonym: "nucleusa ccumbens core" RELATED [BAMS:ACBc] xref: BAMS:ACBc xref: BAMS:AcbC xref: DHBA:10340 xref: EFO:0002458 xref: FMA:77383 xref: neuronames:1840 xref: NLXANAT:20090306 xref: PBA:10093 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] id: UBERON:0012171 name: shell of nucleus accumbens namespace: uberon def: "Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell." [NLXANAT:20090307] subset: efo_slim synonym: "accumbens nucleus shell" RELATED [BAMS:AcbSh] synonym: "accumbens nucleus, shell" RELATED [BAMS:AcbSh] synonym: "nucleus accumbens shell" EXACT [NLXANAT:20090307] synonym: "shell of nucleus accumbens" EXACT [NLXANAT:20090307] synonym: "shell region of nucleus accumbens" EXACT [FMA:77387] xref: BAMS:ACBs xref: BAMS:AcbSh xref: DHBA:10341 xref: EFO:0002459 xref: FMA:77387 xref: neuronames:1163 xref: NLXANAT:20090307 xref: PBA:10094 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] id: UBERON:0012175 name: acoustico-facial VII-VIII ganglion complex namespace: uberon synonym: "acousticofacial ganglion" EXACT [] synonym: "facio-acoustic ganglion" EXACT [] synonym: "facio-acoustic ganglion complex" RELATED [EMAPA:16794] synonym: "facio-acoustic ganglion complex VII-VIII" EXACT [EMAPA:16794] synonym: "facio-acoustic VII-VIII ganglion complex" RELATED [VHOG:0000715] xref: EHDAA2:0000494 xref: EMAPA:16794 xref: SCTID:361514006 is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion [Term] id: UBERON:0012337 name: cauda equina namespace: uberon def: "The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space." [Wikipedia:Cauda_equina] synonym: "filum terminale" RELATED [MESH:A08.800.800.720.725.150] xref: EMAPA:37468 {source="MA:th"} xref: FMA:52590 xref: MA:0003045 xref: MESH:D002420 xref: NCIT:C12689 xref: neuronames:1626 xref: SCTID:263377004 xref: UMLS:C0007458 {source="ncithesaurus:Cauda_Equina"} xref: Wikipedia:Cauda_equina relationship: part_of UBERON:0009623 {source="MESH"} ! spinal nerve root [Term] id: UBERON:0012373 name: sympathetic nerve plexus namespace: uberon def: "A nerve plexus that is part of a sympathetic nervous system." [OBOL:automatic] subset: human_reference_atlas xref: EMAPA:37617 {source="MA:th"} xref: MA:0001160 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000013 ! sympathetic nervous system property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012374 name: subserosal plexus namespace: uberon def: "The subserous part of the enteric plexus of autonomic nerves." [http://medical-dictionary.thefreedictionary.com/subserous+plexus] synonym: "subserous nerve plexus" EXACT [FMA:77598] synonym: "subserous plexus" EXACT [FMA:77598] synonym: "tela subserosa" EXACT [] xref: FMA:77598 xref: SCTID:110699000 xref: Wikipedia:Tela_subserosa is_a: UBERON:0000429 ! enteric plexus [Term] id: UBERON:0012448 name: Herbst's corpuscle namespace: uberon def: "The Corpuscles of Herbst or Herbst corpuscles are a nerve-ending similar to the Pacinian corpuscle, in the mucous membrane of the tongue, in pits on the beak and in other parts of the bodies of birds. It differs from the Pacinian corpuscle in being smaller, in its capsules being more closely approximated, and in that the axis-cylinder in the central clear space is coated with a continuous row of nuclei. In many wading birds, a large number of Herbst corpuscles are found embedded in pits on the mandibles that are believed to enable birds to sense prey under wet sand or soil." [Wikipedia:Corpuscles_of_Herbst] synonym: "corpuscles of Herbst" RELATED [Wikipedia:Corpuscles_of_Herbst] synonym: "Herbst corpuscle" RELATED [Wikipedia:Corpuscles_of_Herbst] xref: Wikipedia:Corpuscles_of_Herbst is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor [Term] id: UBERON:0012449 name: mechanoreceptor namespace: uberon def: "A sensory receptor that responds to mechanical pressure or distortion." [Wikipedia:Mechanoreceptor] comment: Normally there are four main types in glabrous skin: Pacinian corpuscles, Meissner's corpuscles, Merkel's discs, and Ruffini endings. There are also mechanoreceptors in hairy skin, and the hair cells in the cochlea are the most sensitive mechanoreceptors, transducing air pressure waves into nerve signals sent to the brain. In the periodontal ligament, there are some mechanoreceptors, which allow the jaw to relax when biting down on hard objects; the mesencephalic nucleus is responsible for this reflex xref: FMA:86587 xref: MESH:D008465 xref: NCIT:C13821 xref: Wikipedia:Mechanoreceptor is_a: UBERON:0012451 ! sensory receptor [Term] id: UBERON:0012450 name: Meissner's corpuscle namespace: uberon def: "A type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors." [Wikipedia:Meissner%27s_corpuscle] comment: located in papillary layer of dermis in glabrous skin[ISBN:9780849388118] synonym: "Dogiel's end bulb" RELATED [ISBN:9780849388118] synonym: "meisner's corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner corpuscle end-organ" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner's corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner's corpuscles" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "messier corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "messner's corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "Ruffini's end bulb" RELATED [ISBN:9780849388118] synonym: "tactile corpuscles of Wagner and Meissner" RELATED [Wikipedia:Meissner%27s_corpuscle] xref: FMA:83605 xref: NCIT:C13171 xref: SCTID:41421000 xref: UMLS:C0205831 {source="ncithesaurus:Meissner_Corpuscle"} xref: Wikipedia:Meissner%27s_corpuscle is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor [Term] id: UBERON:0012451 name: sensory receptor namespace: uberon def: "A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one." [Wikipedia:Sensory_receptor] synonym: "peripheral ending of sensory neuron" EXACT [FMA:84650] synonym: "sensory nerve ending" RELATED [MESH:A08.800.550.700] xref: FMA:84650 xref: MESH:D011984 xref: NCIT:C13819 xref: SCTID:70402007 xref: UMLS:C0682664 {source="ncithesaurus:Somatosensory_Receptor"} xref: Wikipedia:Sensory_receptor is_a: UBERON:0012453 ! nerve ending [Term] id: UBERON:0012453 name: nerve ending namespace: uberon def: "Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS." [MESH:A08.800.550] synonym: "nerve ending" RELATED [MESH:A08.800.550] xref: MESH:D009411 relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0001027 ! sensory nerve property_value: IAO:0000232 "this class and subclasses may be ceded to GO" xsd:string [Term] id: UBERON:0012456 name: Merkel nerve ending namespace: uberon def: "Mechanoreceptors found in the skin and mucosa of vertebrates that provide touch information to the brain. The information they provide are those regarding pressure and texture. Each ending consists of a Merkel cell in close apposition with an enlarged nerve terminal." [Wikipedia:Merkel_nerve_ending] synonym: "Merkel's disc" EXACT [FMA:83606] synonym: "Merkel's disk" EXACT [] synonym: "Merkel's receptor" EXACT [] synonym: "Merkel's tactile disc" EXACT [] xref: FMA:83606 xref: NIF_Subcellular:FMA_83606 xref: SCTID:9317004 xref: Wikipedia:Merkel_nerve_ending is_a: UBERON:0012449 ! mechanoreceptor relationship: part_of CL:0000242 ! Merkel cell property_value: UBPROP:0000008 "In mammals, Merkel nerve endings have a wide distribution. Merkel nerve endings are found in the basal layer of glabrous and hairy skin, in hair follicles, and in oral and anal mucosa. In humans, Merkel cells (along with Meissner's corpuscles) occur in the superficial skin layers, and are found clustered beneath the ridges of the fingertips that make up fingerprints. In hairy skin, Merkel nerve endings are clustered into specialized epithelial structures called 'touch domes' or 'hair disks'. (Some other types of mechanoreceptors, such as Pacinian corpuscles and Ruffini endings, are found primarily in subcutaneous tissue.) Merkel receptors are also located in the mammary glands. Wherever they are found, the epithelium is arranged to optimize the transfer of pressure to the ending." xsd:string {source="WP"} [Term] id: UBERON:0012457 name: Ruffini nerve ending namespace: uberon def: "An encapsulated nerve receptor present in subpapillary dermis and deep dermis of hairy and glabrous skin." [ISBN:9780849388118, Wikipedia:Bulbous_corpuscle] synonym: "bulbous corpuscle" RELATED [Wikipedia:Ruffini_ending] synonym: "corpuscle of ruffini" RELATED [Wikipedia:Ruffini_ending] synonym: "corpusculum sensorium fusiforme" EXACT OMO:0003011 [Wikipedia:Ruffini_ending] synonym: "Ruffini corpuscle" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini corpuscle end-organ" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini corpuscles" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini endings" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's corpuscle" EXACT [MP:0000989] synonym: "Ruffini's corpuscles" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's end organ" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's ending" RELATED [Wikipedia:Ruffini_ending] synonym: "Ruffini's organs" RELATED [Wikipedia:Ruffini_ending] xref: FMA:83602 xref: FMA:84004 xref: NCIT:C13175 xref: SCTID:53140000 xref: UMLS:C0035943 {source="ncithesaurus:Ruffinis_Corpuscle"} xref: Wikipedia:Bulbous_corpuscle is_a: UBERON:0012449 {source="FMA"} ! mechanoreceptor property_value: IAO:0000232 "there is some debate as to its existence[ISBN:9780849388118]" xsd:string property_value: UBPROP:0000012 "MP says subcutaneous tissue of digits; NCITA says hypodermis" xsd:string {external_ontology="MP"} [Term] id: UBERON:0013118 name: sulcus of brain namespace: uberon def: "A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals." [https://github.com/obophenotype/uberon/issues/315, Wikipedia:Sulcus_(neuroanatomy)] subset: cumbo synonym: "cerebral sulci" EXACT OMO:0003004 [DHBA:10610] synonym: "cerebral sulci" RELATED [NeuroNames:1208] synonym: "cerebral sulcus" RELATED [NeuroNames:1208] synonym: "fissure of brain" NARROW [Wikipedia:Sulcus_(neuroanatomy)] synonym: "sulci & spaces" BROAD OMO:0003004 [HBA:9352] synonym: "sulcus" BROAD [NLX:144078] xref: DHBA:10610 xref: HBA:9352 xref: NCIT:C32292 xref: neuronames:1208 xref: SCTID:279337001 xref: Wikipedia:Sulcus_(neuroanatomy) relationship: part_of UBERON:0000955 ! brain property_value: IAO:0000116 "sulci are considered absent from lissencephalic mammals such as mice, but they may possess fissures. For example, the Allen mouse brain Atlas includes hippocampal, rhinal and choroid fissure. For this reason we do not place a taxon constraint on this class" xsd:string property_value: RO:0002174 NCBITaxon:10088 property_value: UBPROP:0000001 "Indentation on the surface of the brain or spinal cord that forms a recognizable landmark, e.g., central sulcus, sulcus limitans (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} [Term] id: UBERON:0013146 name: venous system of brain namespace: uberon def: "Missing definition for term UBERON:0013146. Please replace it using linked reference." [PMID:20557782, PMID:20566102] synonym: "brain venous system" EXACT [VHOG:0001328] synonym: "cranial venous system" RELATED [] xref: EHDAA2:0000185 xref: EMAPA:18631 xref: MA:0003184 xref: VHOG:0001328 relationship: part_of UBERON:0000955 {source="EHDAA2"} ! brain [Term] id: UBERON:0013147 name: early mesencephalic vesicle namespace: uberon comment: gives rise to midbrain vesicle which gives rise to cerebral aqueduct synonym: "mesencephalic vesicle" EXACT [EHDAA2:0001102] xref: EHDAA2:0001102 is_a: UBERON:0013150 ! future brain vesicle [Term] id: UBERON:0013148 name: early midbrain vesicle namespace: uberon comment: develops into cerebral aqueduct synonym: "midbrain vesicle" EXACT [EHDAA2:0001103] xref: EHDAA2:0001103 xref: SCTID:361481005 is_a: UBERON:0013150 ! future brain vesicle relationship: part_of UBERON:0001891 {source="EHDAA2"} ! midbrain [Term] id: UBERON:0013149 name: hindbrain vesicle namespace: uberon comment: gives rise of 4th ventricle synonym: "rhombencephalic vesicle" EXACT [EHDAA2:0000101] xref: EHDAA2:0000101 xref: SCTID:361482003 is_a: UBERON:0013150 ! future brain vesicle [Term] id: UBERON:0013150 name: future brain vesicle namespace: uberon synonym: "brain vesicle" RELATED [] synonym: "early brain vesicle" EXACT [] synonym: "primary brain vesicle" NARROW [] synonym: "primitive brain vesicle" EXACT [] synonym: "secondary brain vesicle" NARROW [] xref: NCIT:C34259 xref: neuronames:2499 xref: SCTID:360409004 relationship: part_of UBERON:0005281 {source="EHDAA2"} ! ventricular system of central nervous system property_value: IAO:0000116 "consider adding all secondary vesicles (e.g. diencephalic; my/metencephalic. See http://www.dartmouth.edu/~rswenson/NeuroSci/chapter_4.html)." xsd:string property_value: UBPROP:0000012 "Note that some sources may treat the term vesicle as the progenitor of the whole brain region; for example 'The retina develops directly from the neural tube as an outpouching from the diencephalic vesicle'" xsd:string [Term] id: UBERON:0013153 name: arachnoid villus namespace: uberon def: "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves." [ISBN:0471888893, Wikipedia:Arachnoid_granulation] synonym: "arachnoid granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "arachnoid villi" RELATED OMO:0003004 [Wikipedia:Arachnoid_granulation] synonym: "arachnoid villus" RELATED [Wikipedia:Arachnoid_granulation] synonym: "arachnoidal granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "glandulae pacchioni" RELATED [Wikipedia:Arachnoid_granulation] synonym: "glandulæ pacchioni" RELATED [Wikipedia:Arachnoid_granulation] synonym: "granulationes arachnoideales" RELATED [Wikipedia:Arachnoid_granulation] synonym: "pacchioni's granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "pacchionian bodies" RELATED [Wikipedia:Arachnoid_granulation] synonym: "pacchionian glands" RELATED [Wikipedia:Arachnoid_granulation] synonym: "paccini's granulation" RELATED [Wikipedia:Arachnoid_granulation] xref: FMA:83980 xref: NCIT:C32137 xref: UMLS:C0228130 {source="ncithesaurus:Arachnoid_Villus"} xref: Wikipedia:Arachnoid_granulation relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater property_value: UBPROP:0000001 "Arachnoid granulations (or arachnoid villi) are small protrusions of the arachnoid (the thin second layer covering the brain) through the dura mater (the thick outer layer). They protrude into the venous sinuses of the brain, and allow cerebrospinal fluid (CSF) to exit the brain, and enter the blood stream. Largest granulations lie along the superior sagittal sinus, a large venous space running from front to back along the centre of the head (on the inside of the skull). They are, however, present along other dural sinuses as well. Smaller granulations are called villi, large calcified ones are referred to as pacchionian bodies[Wikipedia:Arachnoid_granulation]." xsd:string {source="Wikipedia:Arachnoid_granulation"} [Term] id: UBERON:0013159 name: epithalamus mantle layer namespace: uberon synonym: "mantle layer epithalamus" EXACT [VHOG:0000913] synonym: "mantle layer of epithalamus" EXACT [] xref: EHDAA2:0000449 xref: EHDAA:5435 xref: EMAPA:17533 xref: VHOG:0000913 is_a: UBERON:0004061 ! neural tube mantle layer relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0013160 name: epithalamus ventricular layer namespace: uberon synonym: "ventricular layer epithalamus" EXACT [VHOG:0000884] synonym: "ventricular layer of epithalamus" EXACT [] xref: EHDAA2:0000450 xref: EHDAA:5437 xref: EMAPA:17535 xref: VHOG:0000884 is_a: UBERON:0004060 ! neural tube ventricular layer relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0013161 name: left lateral ventricle namespace: uberon def: "A telencephalic ventricle that is in_the_left_side_of a telencephalon." [OBOL:automatic] synonym: "left telencephalic ventricle" EXACT [] xref: FMA:78450 xref: SCTID:368593005 is_a: UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002812 {source="FMA"} ! left cerebral hemisphere property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013162 name: right lateral ventricle namespace: uberon def: "A telencephalic ventricle that is in_the_right_side_of a telencephalon." [OBOL:automatic] synonym: "right telencephalic ventricle" EXACT [] xref: FMA:78449 xref: SCTID:368571000 is_a: UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002813 {source="FMA"} ! right cerebral hemisphere property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013166 name: vallecula of cerebellum namespace: uberon def: "On the upper surface of the cerebellum the vermis is elevated above the level of the hemispheres, but on the under surface it is sunk almost out of sight in the bottom of a deep depression between them; this depression is called the vallecula of the cerebellum, and lodges the posterior part of the medulla oblongata." [Wikipedia:Vallecula_of_cerebellum] synonym: "vallecula cerebelli" EXACT OMO:0003011 [FMA:75267] xref: BAMS:vlcb xref: FMA:75267 xref: NCIT:C12237 xref: neuronames:646 xref: Wikipedia:Vallecula_of_cerebellum relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0013199 name: stria of neuraxis namespace: uberon synonym: "neuraxis stria" EXACT [FMA:83854] synonym: "neuraxis striae" EXACT OMO:0003004 [] synonym: "stria" BROAD [] synonym: "striae" BROAD OMO:0003004 [] xref: FMA:83854 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0013201 name: olfactory pathway namespace: uberon def: "Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb." [MESH:A08.186.211.577.699] synonym: "anterior perforated substance" RELATED [MESH:A08.186.211.577.699] synonym: "rhinencephalon" RELATED [MESH:A08.186.211.577.699] xref: MESH:D009833 xref: neuronames:2078 xref: SCTID:281148007 xref: Wikipedia:Rhinencephalon is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0000349 ! limbic system [Term] id: UBERON:0013208 name: Grueneberg ganglion namespace: uberon def: "An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures." [Wikipedia:Gr%C3%BCneberg_ganglion] synonym: "GG" RELATED OMO:0003000 [NCBIBook:NBK55971] synonym: "Gruneberg ganglion" RELATED [MA:0002891] synonym: "Grüneberg ganglion" EXACT [] synonym: "septal organ of Gruneberg" RELATED [MA:0002891] xref: EMAPA:35765 xref: MA:0002891 xref: Wikipedia:Gr%C3%BCneberg_ganglion is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0013498 name: vestibulo-cochlear VIII ganglion complex namespace: uberon synonym: "vestibular VIII ganglion complex" RELATED [EHDAA2:0004313] synonym: "vestibulocochlear ganglion complex" EXACT [] synonym: "vestibulocochlear VIII ganglion complex" EXACT [] xref: EHDAA2:0004313 xref: EMAPA:17570 is_a: UBERON:0001714 ! cranial ganglion property_value: IAO:0000116 "requires verification" xsd:string [Term] id: UBERON:0013499 name: glossopharyngeal-vagus IX-X preganglion complex namespace: uberon synonym: "glossopharyngeal-vagus preganglion complex" RELATED [EMAPA:16662] xref: EMAPA:16662 relationship: part_of UBERON:0001714 {source="cjm"} ! cranial ganglion [Term] id: UBERON:0013500 name: glossopharyngeal-vagus IX-X ganglion complex namespace: uberon synonym: "glossopharyngeal-vagus ganglion complex" RELATED [EMAPA:16796] xref: EMAPA:16796 is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion [Term] id: UBERON:0013528 name: Brodmann (1909) area 11 namespace: uberon def: "Brodmann area 11 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning, reasoning, and decision making." [Wikipedia:Brodmann_area_11] synonym: "area 11 of Brodmann" EXACT [FMA:68608] synonym: "area 11 of Brodmann" RELATED [Wikipedia:Brodmann_area_11] synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] synonym: "area 11 of Brodmann-1909" EXACT [BIRNLEX:1742] synonym: "area orbitalis interna" RELATED OMO:0003011 [NeuroNames:1036] synonym: "area praefrontalis" BROAD [BIRNLEX:1742] synonym: "B09-11" BROAD OMO:0003000 [BIRNLEX:1742, NIFSTD:SumsDB_abbrevSource] synonym: "B09-11" EXACT [BIRNLEX:1742] synonym: "BA11" RELATED [FMA:68608] synonym: "Brodmann (1909) area 11" EXACT [BIRNLEX:1742] synonym: "Brodmann area 11, prefrontal" EXACT [BIRNLEX:1742] synonym: "brodmann's area 11" RELATED [NeuroNames:1036] synonym: "medial orbital area" EXACT [FMA:68608] synonym: "prefrontal area 11" RELATED [Wikipedia:Brodmann_area_11] xref: BIRNLEX:1742 xref: FMA:68608 xref: neuronames:1036 {source="BIRNLEX:1742"} xref: UMLS:C1272533 {source="BIRNLEX:1742"} xref: Wikipedia:Brodmann_area_11 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area [Term] id: UBERON:0013529 name: Brodmann area namespace: uberon def: "A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames)." [BIRNLEX:1731] synonym: "Brodmann parcellation scheme region" RELATED [BIRNLEX:1731] synonym: "Brodmann partition scheme region" RELATED [BIRNLEX:1731] synonym: "Brodmann's areas" RELATED OMO:0003004 [BIRNLEX:1731] xref: BAMS:VTM xref: BIRNLEX:1731 xref: FMA:68596 xref: NCIT:C94868 xref: neuronames:1032 {source="tgbugs"} xref: SCTID:384717008 xref: Wikipedia:Brodmann_area xref: WikipediaCategory:Brodmann_areas is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="FMA", source="Wikipedia"} ! cerebral cortex [Term] id: UBERON:0013531 name: retrosplenial region namespace: uberon def: "The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30." [Wikipedia:Retrosplenial_region] subset: pheno_slim synonym: "retrosplenial area" RELATED [BAMS:RSP] synonym: "retrosplenial cortex" RELATED [BTO:0003977, Wikipedia:Retrosplenial_region] xref: BAMS:RSP xref: BTO:0003977 xref: DHBA:10324 xref: DHBA:266441669 xref: DMBA:16093 xref: MBA:254 xref: neuronames:2436 xref: Wikipedia:Retrosplenial_region is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex [Term] id: UBERON:0013533 name: Brodmann (1909) area 2 namespace: uberon synonym: "area 2 of Brodmann" EXACT [FMA:68598] synonym: "area 2 of Brodmann (guenon)" RELATED [NeuroNames:1033] synonym: "area 2 of Brodmann-1909" EXACT [BIRNLEX:1733] synonym: "area postcentralis caudalis" EXACT [BIRNLEX:1733] synonym: "B09-2" BROAD OMO:0003000 [BIRNLEX:1733, NIFSTD:SumsDB_abbrevSource] synonym: "B09-2" EXACT [BIRNLEX:1733] synonym: "BA2" RELATED [FMA:68598] synonym: "Brodmann (1909) area 2" EXACT [BIRNLEX:1733] synonym: "Brodmann area 2" EXACT [FMA:68598] synonym: "Brodmann area 2, caudal postcentral" EXACT [BIRNLEX:1733] synonym: "Brodmann's area 2" EXACT [FMA:68598] synonym: "caudal postcentral area" EXACT [FMA:68598] synonym: "postcentral gyrus" RELATED [Wikipedia:Brodmann_area_2] xref: BIRNLEX:1733 xref: FMA:68598 xref: neuronames:1033 {source="BIRNLEX:1733"} xref: UMLS:C1272524 {source="BIRNLEX:1733"} xref: Wikipedia:Brodmann_area_2 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013535 name: Brodmann (1909) area 4 namespace: uberon def: "The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter." [BIRNLEX:1735] synonym: "area 4 of Brodmann" EXACT [FMA:68600] synonym: "area 4 of Brodmann (guenon)" RELATED [NeuroNames:1014] synonym: "area 4 of Brodmann-1909" EXACT [BIRNLEX:1735] synonym: "area gigantopyramidalis" EXACT [BIRNLEX:1735] synonym: "B09-4" BROAD OMO:0003000 [BIRNLEX:1735, NIFSTD:SumsDB_abbrevSource] synonym: "B09-4" EXACT [BIRNLEX:1735] synonym: "BA4" RELATED [FMA:68600] synonym: "Brodmann (1909) area 4" EXACT [BIRNLEX:1735] synonym: "Brodmann area 4" EXACT [FMA:68600] synonym: "Brodmann area 4, gigantopyramidal" EXACT [BIRNLEX:1735] synonym: "Brodmann's area 4" EXACT [FMA:68600] synonym: "giant pyramidal area" EXACT [FMA:68600] xref: BIRNLEX:1735 xref: FMA:68600 xref: neuronames:1014 {source="BIRNLEX:1735"} xref: UMLS:C1272526 {source="BIRNLEX:1735"} xref: Wikipedia:Brodmann_area_4 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0001384 {seeAlso="https://github.com/obophenotype/uberon/issues/515"} ! primary motor cortex property_value: seeAlso "https://github.com/obophenotype/uberon/issues/515" xsd:anyURI [Term] id: UBERON:0013538 name: Brodmann (1909) area 7 namespace: uberon def: "Brodmann area 7 is one of Brodmann's cytologically defined regions of the brain. It is involved in locating objects in space. It serves as a point of convergence between vision and proprioception to determine where objects are in relation to parts of the body." [Wikipedia:Brodmann_area_7] synonym: "area 7 of Brodmann" EXACT [FMA:68604] synonym: "area 7 of Brodmann-1909" EXACT [BIRNLEX:1738] synonym: "area parietalis superior" EXACT OMO:0003011 [BIRNLEX:1738, Wikipedia:Brodmann_area_7] synonym: "B09-7" BROAD OMO:0003000 [BIRNLEX:1738, NIFSTD:SumsDB_abbrevSource] synonym: "B09-7" EXACT [BIRNLEX:1738] synonym: "BA7" RELATED [FMA:68604] synonym: "Brodmann (1909) area 7" EXACT [BIRNLEX:1738] synonym: "Brodmann area 7" EXACT [FMA:68604] synonym: "Brodmann area 7, superior parietal" EXACT [BIRNLEX:1738] synonym: "gyrus F3" RELATED OMO:0003011 [NeuroNames:85] synonym: "gyrus frontalis tertius" RELATED OMO:0003011 [NeuroNames:85] synonym: "regio subfrontalis" RELATED OMO:0003011 [NeuroNames:85] xref: BIRNLEX:1738 xref: FMA:68604 xref: neuronames:85 {source="BIRNLEX:1738"} xref: UMLS:C1272529 {source="BIRNLEX:1738"} xref: Wikipedia:Brodmann_area_7 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013539 name: Brodmann (1909) area 8 namespace: uberon def: "Brodmann area 8 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning complex movements." [Wikipedia:Brodmann_area_8] synonym: "area 8 of Brodmann" EXACT [FMA:68605] synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8 of Brodmann-1909" EXACT [BIRNLEX:1739] synonym: "area frontalis intermedia" EXACT OMO:0003011 [BIRNLEX:1739, Wikipedia:Brodmann_area_8] synonym: "B09-8" BROAD OMO:0003000 [BIRNLEX:1739, NIFSTD:SumsDB_abbrevSource] synonym: "B09-8" EXACT [BIRNLEX:1739] synonym: "BA8" RELATED [FMA:68605] synonym: "Brodmann (1909) area 8" EXACT [BIRNLEX:1739] synonym: "Brodmann area 8" EXACT [FMA:68605] synonym: "Brodmann area 8, intermediate frontal" EXACT [BIRNLEX:1739] synonym: "brodmann's area 8" RELATED [NeuroNames:1034] synonym: "intermediate frontal area" EXACT [FMA:68605] xref: BIRNLEX:1739 xref: FMA:68605 xref: neuronames:1034 {source="BIRNLEX:1739"} xref: UMLS:C1272530 {source="BIRNLEX:1739"} xref: Wikipedia:Brodmann_area_8 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013540 name: Brodmann (1909) area 9 namespace: uberon synonym: "area 9 of Brodmann" EXACT [FMA:68606] synonym: "area 9 of Brodmann (guenon)" RELATED [NeuroNames:1024] synonym: "area 9 of Brodmann-1909" EXACT [BIRNLEX:1740] synonym: "area frontalis granularis" EXACT OMO:0003011 [BIRNLEX:1740, Wikipedia:Brodmann_area_9] synonym: "B09-9" BROAD OMO:0003000 [BIRNLEX:1740, NIFSTD:SumsDB_abbrevSource] synonym: "B09-9" EXACT [BIRNLEX:1740] synonym: "BA9" RELATED [FMA:68606] synonym: "Brodmann (1909) area 9" EXACT [BIRNLEX:1740] synonym: "Brodmann area 9" EXACT [FMA:68606] synonym: "Brodmann area 9, granular frontal" EXACT [BIRNLEX:1740] synonym: "brodmann's area 9" RELATED [NeuroNames:1024] synonym: "granular frontal area" EXACT [FMA:68606] xref: BIRNLEX:1740 xref: FMA:68606 xref: neuronames:1024 {source="BIRNLEX:1740"} xref: UMLS:C1272531 {source="BIRNLEX:1740"} xref: Wikipedia:Brodmann_area_9 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0009834 {source="https://orcid.org/0000-0003-3308-6245"} ! dorsolateral prefrontal cortex [Term] id: UBERON:0013541 name: Brodmann (1909) area 10 namespace: uberon def: "Brodmann area 10, or BA10, is part of the frontal cortex in the human brain. BA10 encompasses the most anterior part of the frontal cortex, known as the frontopolar region. This area is believed to play a part in strategic processes involved in memory retrieval and executive function. This area is also called frontopolar area 10, and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. It occupies the most rostral portions of the superior frontal gyrus and the middle frontal gyrus. In humans, on the medial aspect of the hemisphere it is bounded ventrally by the superior rostral sulcus (H). It does not extend as far as the cingulate sulcus. Cytoarchitecturally it is bounded dorsally by the granular frontal area 9, caudally by the middle frontal area 46, and ventrally by the orbital area 47 and by the rostral area 12 or, in an early version of Brodmann's cortical map (Brodmann-1909), the prefrontal Brodmann area 11-1909." [Wikipedia:Brodmann_area_10] synonym: "area 10 of Brodmann" EXACT [FMA:68607] synonym: "area 10 of Brodmann-1909" EXACT [BIRNLEX:1741] synonym: "area frontopolaris" EXACT [BIRNLEX:1741] synonym: "B09-10" BROAD OMO:0003000 [BIRNLEX:1741, NIFSTD:SumsDB_abbrevSource] synonym: "B09-10" EXACT [BIRNLEX:1741] synonym: "BA10" RELATED [FMA:68607] synonym: "Brodmann (1909) area 10" EXACT [BIRNLEX:1741] synonym: "Brodmann area 10" EXACT [FMA:68607] synonym: "Brodmann area 10, frontoplar" EXACT [BIRNLEX:1741] synonym: "lateral orbital area" EXACT [FMA:68607] synonym: "rostral sulcus" RELATED [NeuroNames:76] synonym: "sulcus rectus" RELATED OMO:0003011 [NeuroNames:76] synonym: "sulcus rectus (Krieg)" RELATED OMO:0003011 [NeuroNames:76] xref: BAMS:ros xref: BIRNLEX:1741 xref: DHBA:146034836 xref: FMA:68607 xref: neuronames:76 {source="BIRNLEX:1741"} xref: UMLS:C1272532 {source="BIRNLEX:1741"} xref: Wikipedia:Brodmann_area_10 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0000451 ! prefrontal cortex [Term] id: UBERON:0013543 name: Brodmann (1909) area 12 namespace: uberon alt_id: UBERON:0013530 def: "Brodmann area 12 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It occupies the most rostral portion of the frontal lobe. Brodmann-1909 did not regard it as homologous, either topographically or cytoarchitecturally, to rostral area 12 of the human. Distinctive features (Brodmann-1905): a quite distinct internal granular layer (IV) separates slender pyramidal cells of the external pyramidal layer (III) and the internal pyramidal layer (V); the multiform layer (VI) is expanded, contains widely dispersed spindle cells and merges gradually with the underlying cortical white matter; all cells, including the pyramidal cells of the external and internal pyramidal layers are inordinately small; the internal pyramidal layer (V) also contains spindle cells in groups of two to five located close to its border with the internal granular layer (IV)." [Wikipedia:Brodmann_area_12] synonym: "area 12 of Brodmann" EXACT [FMA:68609] synonym: "area 12 of Brodmann-1909" EXACT [BIRNLEX:1743] synonym: "area praefrontalis" BROAD [BIRNLEX:1743] synonym: "area praefrontalis" EXACT [BIRNLEX:1743] synonym: "B09-12" BROAD OMO:0003000 [BIRNLEX:1743, NIFSTD:SumsDB_abbrevSource] synonym: "B09-12" EXACT [BIRNLEX:1743] synonym: "BA12" RELATED [FMA:68609] synonym: "Brodmann (1909) area 12" EXACT [BIRNLEX:1743] synonym: "Brodmann area 12" EXACT [FMA:68609] synonym: "Brodmann area 12, prefrontal" EXACT [BIRNLEX:1743] synonym: "frontopolar area" EXACT [FMA:68609] synonym: "sulcus fronto-orbitalis" RELATED OMO:0003011 [NeuroNames:77] xref: BIRNLEX:1743 xref: FMA:68609 xref: neuronames:77 {source="BIRNLEX:1743"} xref: UMLS:C1272534 {source="BIRNLEX:1743"} xref: Wikipedia:Brodmann_area_12 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013544 name: Brodmann (1909) area 13 namespace: uberon def: "Brodmann area 13 is a subdivision of the cerebral cortex as defined on the guenon monkey and on the basis of cytoarchitecture. Brodmann area 13 is found in humans, however it seems to act as a bridge between the lateral and medial layers of the brain. Thus it is sometimes misidentified as not being a Brodmann area." [Wikipedia:Brodmann_area_13] synonym: "area 13 of Brodmann" RELATED [FMA:68610] synonym: "area 13 of Brodmann-1909" EXACT [BIRNLEX:1744] synonym: "B09-13" BROAD OMO:0003000 [BIRNLEX:1744, NIFSTD:SumsDB_abbrevSource] synonym: "B09-13" EXACT [BIRNLEX:1744] synonym: "BA13" RELATED [FMA:68610] synonym: "Brodmann (1909) area 13" EXACT [BIRNLEX:1744] synonym: "Brodmann area 13" EXACT [FMA:68610] xref: BIRNLEX:1744 xref: FMA:68610 xref: neuronames:1009 xref: OldNeuroNames:379923166 {source="BIRNLEX:1744"} xref: Wikipedia:Brodmann_area_13 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013545 name: Brodmann (1909) area 14 namespace: uberon def: "Brodmann Area 14 is one of Brodmann's subdivisions of the cerebral cortex in the brain. It was defined by Brodmann in the guenon monkey. No equivalent structure exists in humans." [Wikipedia:Brodmann_area_14] synonym: "area 14 of Brodmann" RELATED [FMA:68611] synonym: "area 14 of Brodmann-1909" EXACT [BIRNLEX:1745] synonym: "B09-14" BROAD OMO:0003000 [BIRNLEX:1745, NIFSTD:SumsDB_abbrevSource] synonym: "B09-14" EXACT [BIRNLEX:1745] synonym: "BA14" RELATED [FMA:68611] synonym: "Brodmann (1909) area 14" EXACT [BIRNLEX:1745] synonym: "Brodmann area 14" EXACT [FMA:68611] xref: BIRNLEX:1745 xref: FMA:68611 xref: neuronames:1008 xref: OldNeuroNames:2049637081 {source="BIRNLEX:1745"} xref: Wikipedia:Brodmann_area_14 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0000451 {notes="vmPFC", source="WP"} ! prefrontal cortex [Term] id: UBERON:0013546 name: Brodmann (1909) area 15 namespace: uberon def: "Brodmann Area 15 is one of Brodmann's subdivisions of the cerebral cortex in the brain. Area 15 was defined by Brodmann in the guenon monkey, but he found no equivalent structure in humans. However, functional imaging experiments have found structures that may be homologous." [Wikipedia:Brodmann_area_15] synonym: "area 15 of Brodmann" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann (guenon)" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann-1909" EXACT [BIRNLEX:1746] synonym: "B09-15" BROAD OMO:0003000 [BIRNLEX:1746, NIFSTD:SumsDB_abbrevSource] synonym: "B09-15" EXACT [BIRNLEX:1746] synonym: "BA15" RELATED [FMA:68612] synonym: "Brodmann (1909) area 15" EXACT [BIRNLEX:1746] synonym: "Brodmann area 15" EXACT [FMA:68612] synonym: "brodmann's area 15" RELATED [NeuroNames:1010] synonym: "insula ventralis" RELATED OMO:0003011 [NeuroNames:1010] xref: BIRNLEX:1746 xref: FMA:68612 xref: neuronames:1010 {source="BIRNLEX:1746"} xref: Wikipedia:Brodmann_area_15 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013547 name: Brodmann (1909) area 16 namespace: uberon def: "Brodmann area 16 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It is a relatively undifferentiated cortical area that Brodmann regarded as part of the insula because of the relation of its innermost multiform layer (VI) with the claustrum (VICl). The laminar organization of cortex is almost totally lacking. The molecular layer (I) is wide as in area 15 of Brodmann-1905. The space between layer I and layer VI is composed of a mixture of pyramidal cells and spindle cells with no significant number of granule cells. Pyramidal cells clump in the outer part to form glomeruli similar to those seen in some of the primary olfactory areas (Brodmann-1905). This term also refers to an area known as peripaleocortical claustral - a cytoarchitecturally defined (agranular) portion of the insula at its rostral extreme where it approaches most closely the claustrum and the prepyriform area (Stephan-76)." [Wikipedia:Brodmann_area_16] synonym: "area 16 of Brodmann" EXACT [FMA:68613] synonym: "area 16 of Brodmann (guenon)" RELATED [NeuroNames:1011] synonym: "area 16 of Brodmann-1909" EXACT [BIRNLEX:1747] synonym: "B09-16" BROAD OMO:0003000 [BIRNLEX:1747, NIFSTD:SumsDB_abbrevSource] synonym: "B09-16" EXACT [BIRNLEX:1747] synonym: "BA16" RELATED [FMA:68613] synonym: "Brodmann (1909) area 16" EXACT [BIRNLEX:1747] synonym: "Brodmann area 16" EXACT [FMA:68613] synonym: "brodmann's area 16" RELATED [NeuroNames:1011] synonym: "insula olfactoria" RELATED OMO:0003011 [NeuroNames:1011] xref: BIRNLEX:1747 xref: FMA:68613 xref: neuronames:1011 {source="BIRNLEX:1747"} xref: Wikipedia:Brodmann_area_16 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013550 name: Brodmann (1909) area 19 namespace: uberon def: "Brodmann area 19, or BA19, is part of the occipital lobe cortex in the human brain. Along with area 18, it comprises the extrastriate (or peristriate) cortex. In normally-sighted humans, extrastriate cortex is a visual association area, with feature-extracting, shape recognition, attentional, and multimodal integrating functions. This area is also known as peristriate area 19, and it refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the lingual gyrus, the cuneus, the lateral occipital gyrus (H) and the superior occipital gyrus (H) of the occipital lobe where it is bounded approximately by the parieto-occipital sulcus. Cytoarchitecturally it is bounded on one side by the parastriate area 18 which it surrounds. Rostrally it is bounded by the angular area 39 (H) and the occipitotemporal area 37 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_19] synonym: "area 19 of Brodmann" EXACT [FMA:68616] synonym: "area 19 of Brodmann (guenon)" RELATED [NeuroNames:1028] synonym: "area 19 of Brodmann-1909" EXACT [BIRNLEX:1750] synonym: "area peristriata" EXACT [BIRNLEX:1750] synonym: "area praeoccipitalis" RELATED OMO:0003011 [NeuroNames:1028] synonym: "B09-19" BROAD OMO:0003000 [BIRNLEX:1750, NIFSTD:SumsDB_abbrevSource] synonym: "B09-19" EXACT [BIRNLEX:1750] synonym: "BA19" RELATED [FMA:68616] synonym: "Brodmann (1909) area 19" EXACT [BIRNLEX:1750] synonym: "Brodmann area 19" EXACT [FMA:68616] synonym: "Brodmann area 19, peristriate" EXACT [BIRNLEX:1750] synonym: "Brodmann's area 19" EXACT [FMA:68616] synonym: "preoccipital area" EXACT [FMA:68616] xref: BIRNLEX:1750 xref: FMA:68616 xref: neuronames:1028 {source="BIRNLEX:1750"} xref: UMLS:C1272537 {source="BIRNLEX:1750"} xref: Wikipedia:Brodmann_area_19 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0014370 {source="WP"} ! extrastriate cortex [Term] id: UBERON:0013551 name: Brodmann (1909) area 20 namespace: uberon def: "Brodmann area 20, or BA20, is part of the temporal cortex in the human brain. The region encompasses most of the ventral temporal cortex, a region believed to play a part in high-level visual processing and recognition memory. This area is also known as inferior temporal area 20, and it refers to a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the inferior temporal gyrus. Cytoarchitecturally it is bounded medially by the ectorhinal area 36 (H), laterally by the middle temporal area 21, rostrally by the temporopolar area 38 (H) and caudally by the occipitotemporal area 37 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_20] synonym: "area 20 of Brodmann" EXACT [FMA:68617] synonym: "area 20 of Brodmann (guenon)" RELATED [NeuroNames:1025] synonym: "area 20 of Brodmann-1909" EXACT [BIRNLEX:1751] synonym: "area temporalis inferior" EXACT [BIRNLEX:1751] synonym: "B09-20" BROAD OMO:0003000 [BIRNLEX:1751, NIFSTD:SumsDB_abbrevSource] synonym: "B09-20" EXACT [BIRNLEX:1751] synonym: "BA20" RELATED [FMA:68617] synonym: "Brodmann (1909) area 20" EXACT [BIRNLEX:1751] synonym: "Brodmann area 20" EXACT [FMA:68617] synonym: "Brodmann area 20, inferior temporal" EXACT [BIRNLEX:1751] synonym: "brodmann's area 20" RELATED [NeuroNames:1025] synonym: "inferior temporal area" EXACT [FMA:68617] xref: BIRNLEX:1751 xref: FMA:68617 xref: neuronames:1025 {source="BIRNLEX:1751"} xref: UMLS:C1272538 {source="BIRNLEX:1751"} xref: Wikipedia:Brodmann_area_20 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013552 name: Brodmann (1909) area 21 namespace: uberon def: "Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]." [Wikipedia:Brodmann_area_21] synonym: "area 21 of Brodmann" EXACT [FMA:68618] synonym: "area 21 of Brodmann (guenon)" RELATED [NeuroNames:1016] synonym: "area 21 of Brodmann-1909" EXACT [BIRNLEX:1752] synonym: "area temporalis media" RELATED [BIRNLEX:1752] synonym: "B09-21" BROAD OMO:0003000 [BIRNLEX:1752, NIFSTD:SumsDB_abbrevSource] synonym: "B09-21" EXACT [BIRNLEX:1752] synonym: "BA21" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 21" EXACT [BIRNLEX:1752] synonym: "Brodmann area 21" EXACT [] synonym: "Brodmann area 21, middle temporal" EXACT [BIRNLEX:1752] synonym: "brodmann's area 21" RELATED [NeuroNames:1016] xref: BIRNLEX:1752 xref: FMA:68618 xref: neuronames:1016 {source="BIRNLEX:1752"} xref: UMLS:C1272539 {source="BIRNLEX:1752"} xref: Wikipedia:Brodmann_area_21 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0016538 ! temporal cortex [Term] id: UBERON:0013553 name: Brodmann (1909) area 22 namespace: uberon def: "Brodmann area 22 is one of Brodmann's cytologically defined regions of the brain. It is involved in auditory processing." [Wikipedia:Brodmann_area_22] synonym: "area 22 of Brodmann" EXACT [FMA:68619] synonym: "area 22 of Brodmann (guenon)" RELATED [NeuroNames:1017] synonym: "area 22 of Brodmann-1909" EXACT [BIRNLEX:1753] synonym: "area temporalis superior" EXACT OMO:0003011 [BIRNLEX:1753, Wikipedia:Brodmann_area_22] synonym: "B09-22" BROAD OMO:0003000 [BIRNLEX:1753, NIFSTD:SumsDB_abbrevSource] synonym: "B09-22" EXACT [BIRNLEX:1753] synonym: "BA22" RELATED [FMA:68619] synonym: "Brodmann (1909) area 22" EXACT [BIRNLEX:1753] synonym: "Brodmann area 22" EXACT [FMA:68619] synonym: "Brodmann area 22, superior temporal" EXACT [BIRNLEX:1753] synonym: "brodmann's area 22" RELATED [NeuroNames:1017] synonym: "Superior temporal area" EXACT [FMA:68619] xref: BIRNLEX:1753 xref: FMA:68619 xref: neuronames:1017 {source="BIRNLEX:1753"} xref: UMLS:C1272540 {source="BIRNLEX:1753"} xref: Wikipedia:Brodmann_area_22 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013554 name: Brodmann (1909) area 23 namespace: uberon def: "The term area 23 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. Brodmann regarded it as topographically and cytoarchitecturally homologous to the combined ventral posterior cingulate area 23 and dorsal posterior cingulate area 31 of the human (Brodmann-1909). Distinctive Features (Brodmann-1905): the cortex is relatively thin; smaller cells predominate; the cell density of the multiform layer (VI) is great, producing a distinct boundary with the subcortical white matter; the internal granular layer (IV) is rather well developed; the internal pyramidal layer (V) contains a dense population of round, medium-sized ganglion cells concentrated at the border with layer IV; layers V and VI are narrow with a distinct mutual boundary.nn* Definition Source NeuroNames." [BIRNLEX:1754] synonym: "area 23 of Brodmann" EXACT [FMA:68620] synonym: "area 23 of Brodmann (guenon)" RELATED [NeuroNames:1018] synonym: "area 23 of Brodmann-1909" EXACT [BIRNLEX:1754] synonym: "area cingularis posterior" RELATED OMO:0003011 [NeuroNames:1018] synonym: "area cingularis posterior ventralis" EXACT OMO:0003011 [BIRNLEX:1754, Wikipedia:Brodmann_area_23] synonym: "B09-23" BROAD OMO:0003000 [BIRNLEX:1754, NIFSTD:SumsDB_abbrevSource] synonym: "B09-23" EXACT [BIRNLEX:1754] synonym: "BA23" RELATED [FMA:68620] synonym: "Brodmann (1909) area 23" EXACT [BIRNLEX:1754] synonym: "Brodmann area 23" EXACT [FMA:68620] synonym: "Brodmann area 23, ventral posterior cingulate" EXACT [BIRNLEX:1754] synonym: "brodmann's area 23" RELATED [NeuroNames:1018] synonym: "granular cingulate area" EXACT [FMA:68620] synonym: "posterior cingulate area" EXACT [FMA:68620] synonym: "ventral posterior cingulate area" RELATED [] xref: BIRNLEX:1754 xref: FMA:68620 xref: neuronames:1018 {source="BIRNLEX:1754"} xref: UMLS:C1272541 {source="BIRNLEX:1754"} xref: Wikipedia:Brodmann_area_23 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013556 name: Brodmann (1909) area 25 namespace: uberon def: "Brodmann area 25 (BA25) is an area in the cerebral cortex of the brain and delineated based on its cytoarchitectonic characteristics. It is also called the subgenual area or area subgenualis. It is the 25th 'Brodmann area' defined by Korbinian Brodmann (thus its name). BA25 is located in the cingulate region as a narrow band in the caudal portion of the subcallosal area adjacent to the paraterminal gyrus. The posterior parolfactory sulcus separates the paraterminal gyrus from BA25. Rostrally it is bound by the prefrontal area 11 of Brodmann." [Wikipedia:Brodmann_area_25] synonym: "area 25 of Brodmann" EXACT [FMA:68622] synonym: "area 25 of Brodmann (guenon)" RELATED [NeuroNames:1029] synonym: "area 25 of Brodmann-1909" EXACT [BIRNLEX:1756] synonym: "area subgenualis" EXACT [BIRNLEX:1756] synonym: "B09-25" BROAD OMO:0003000 [BIRNLEX:1756, NIFSTD:SumsDB_abbrevSource] synonym: "B09-25" EXACT [BIRNLEX:1756] synonym: "BA25" RELATED [FMA:68622] synonym: "Brodmann (1909) area 25" EXACT [BIRNLEX:1756] synonym: "Brodmann area 25" EXACT [FMA:68622] synonym: "Brodmann area 25, subgenual" EXACT [BIRNLEX:1756] synonym: "Brodmann's area 25" EXACT [FMA:68622] xref: BIRNLEX:1756 xref: FMA:68622 xref: neuronames:1029 {source="BIRNLEX:1756"} xref: UMLS:C1272543 {source="BIRNLEX:1756"} xref: Wikipedia:Brodmann_area_25 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013558 name: Brodmann (1909) area 27 namespace: uberon def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [Wikipedia:Brodmann_area_27] synonym: "area 27" EXACT [FMA:68624] synonym: "area 27 of Brodmann" EXACT [] synonym: "area 27 of Brodmann (guenon)" RELATED [NeuroNames:1039] synonym: "area 27 of Brodmann-1909" EXACT [BIRNLEX:1758] synonym: "area praesubicularis" EXACT [BIRNLEX:1758] synonym: "B09-27" BROAD OMO:0003000 [BIRNLEX:1758, NIFSTD:SumsDB_abbrevSource] synonym: "B09-27" EXACT [BIRNLEX:1758] synonym: "BA27" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 27" EXACT [BIRNLEX:1758] synonym: "Brodmann area 26, presubicular" EXACT [BIRNLEX:1758] synonym: "Brodmann area 27" EXACT [FMA:68624] synonym: "brodmann's area 27" RELATED [NeuroNames:1039] synonym: "presubicular area" EXACT [FMA:68624] xref: BIRNLEX:1758 xref: FMA:68624 xref: neuronames:1039 {source="BIRNLEX:1758"} xref: UMLS:C0175194 {source="BIRNLEX:1758"} xref: Wikipedia:Brodmann_area_27 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0001953 {notes="consider merging many sources treat as synonymous"} ! presubiculum [Term] id: UBERON:0013559 name: Brodmann (1909) area 28 namespace: uberon synonym: "area 28 of Brodmann" EXACT [] synonym: "area 28 of Brodmann (Crosby)" EXACT [] synonym: "area 28 of Brodmann (guenon)" RELATED [NeuroNames:1030] synonym: "area 28 of Brodmann-1909" EXACT [BIRNLEX:1759] synonym: "area entorhinalis" EXACT [BIRNLEX:1759] synonym: "area entorhinalis ventralis" EXACT OMO:0003011 [Wikipedia:Brodmann_area_28] synonym: "B09-28" BROAD OMO:0003000 [BIRNLEX:1759, NIFSTD:SumsDB_abbrevSource] synonym: "B09-28" EXACT [BIRNLEX:1759] synonym: "BA28" EXACT OMO:0003000 [] synonym: "Brodmann (1909) area 28" EXACT [BIRNLEX:1759] synonym: "Brodmann area 28" EXACT [FMA:68625] synonym: "Brodmann area 28, entorhinal" EXACT [BIRNLEX:1759] xref: BIRNLEX:1759 xref: FMA:68625 xref: neuronames:1030 {source="BIRNLEX:1759"} xref: UMLS:C0598377 {source="BIRNLEX:1759"} xref: Wikipedia:Brodmann_area_28 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0002895 {notes="consider merging many sources treat as synonymous"} ! secondary olfactory cortex property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Brodmann_Cytoarchitectonics_28.png" xsd:anyURI [Term] id: UBERON:0013560 name: Brodmann (1909) area 32 namespace: uberon def: "The Brodmann area 32, also known in the human brain as the dorsal anterior cingulate area 32, refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it forms an outer arc around the anterior cingulate gyrus. The cingulate sulcus defines approximately its inner boundary and the superior rostral sulcus (H) its ventral boundary; rostrally it extends almost to the margin of the frontal lobe. Cytoarchitecturally it is bounded internally by the ventral anterior cingulate area 24, externally by medial margins of the agranular frontal area 6, intermediate frontal area 8, granular frontal area 9, frontopolar area 10, and prefrontal area 11-1909. (Brodmann19-09). Dorsal region of anterior cingulate gyrus is associated with rational thought processes, most notably active during the Stroop task." [Wikipedia:Brodmann_area_32] synonym: "area 25 of Brodmann-1905" RELATED [NeuroNames:1021] synonym: "area 32 of Brodmann" EXACT [FMA:68629] synonym: "area 32 of Brodmann (guenon)" RELATED [NeuroNames:1021] synonym: "area 32 of Brodmann-1909" EXACT [BIRNLEX:1760] synonym: "area cingularis anterior dorsalis" EXACT OMO:0003011 [BIRNLEX:1760, Wikipedia:Brodmann_area_32] synonym: "area praelimbica" RELATED OMO:0003011 [NeuroNames:1021] synonym: "B09-32" BROAD OMO:0003000 [BIRNLEX:1760, NIFSTD:SumsDB_abbrevSource] synonym: "B09-32" EXACT [BIRNLEX:1760] synonym: "BA32" RELATED [FMA:68629] synonym: "Brodmann (1909) area 32" EXACT [BIRNLEX:1760] synonym: "Brodmann area 32" EXACT [FMA:68629] synonym: "Brodmann area 32, dorsal anterior cingulate" EXACT [BIRNLEX:1760] synonym: "brodmann's area 32" RELATED [NeuroNames:1021] synonym: "Prelimbic area" RELATED [FMA:68629] xref: BIRNLEX:1760 xref: EMAPA:36447 xref: FMA:68629 xref: neuronames:1021 {source="BIRNLEX:1760"} xref: UMLS:C1272493 {source="BIRNLEX:1760"} xref: Wikipedia:Brodmann_area_32 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013561 name: Brodmann (1909) area 43 namespace: uberon def: "Brodmann area 43 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It was described (but not labeled) on the map of cortical areas in Brodmann-1909, and it was regarded as cytoarchitecturally homologous to area 30 of Mauss in 1908 in the guenon and subcentral area 43 of the human (Brodmann-1909). The Vogts found no distinctive architectonic area of the corresponding location in the guenon (Vogts-1919)." [Wikipedia:Brodmann_area_43] synonym: "area 43 of brodmann" EXACT [FMA:68640] synonym: "area 43 of Brodmann (guenon)" RELATED [NeuroNames:1013] synonym: "area 43 of Brodmann-1909" EXACT [BIRNLEX:1761] synonym: "area subcentralis" EXACT [BIRNLEX:1761] synonym: "B09-43" BROAD OMO:0003000 [BIRNLEX:1761, NIFSTD:SumsDB_abbrevSource] synonym: "B09-43" EXACT [BIRNLEX:1761] synonym: "BA43" RELATED [FMA:68640] synonym: "Brodmann (1909) area 43" EXACT [BIRNLEX:1761] synonym: "Brodmann area 43" EXACT [FMA:68640] synonym: "Brodmann area 43, subcentral" EXACT [BIRNLEX:1761] synonym: "brodmann's area 43" RELATED [NeuroNames:1013] xref: BIRNLEX:1761 xref: FMA:68640 xref: neuronames:1013 {source="BIRNLEX:1761"} xref: UMLS:C1272506 {source="BIRNLEX:1761"} xref: Wikipedia:Brodmann_area_43 is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013562 name: Brodmann (1909) area 8a namespace: uberon synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8a of Brodmann-1909" EXACT [BIRNLEX:1762] synonym: "B09-8a" BROAD OMO:0003000 [BIRNLEX:1762, NIFSTD:SumsDB_abbrevSource] synonym: "B09-8a" EXACT [BIRNLEX:1762] synonym: "Brodmann (1909) area 8a" EXACT [BIRNLEX:1762] synonym: "Brodmann area 8a" EXACT [] synonym: "brodmann's area 8" RELATED [NeuroNames:1034] xref: BIRNLEX:1762 xref: neuronames:1034 {source="BIRNLEX:1762"} is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013573 name: Brodmann (1909) area 40 namespace: uberon def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [Wikipedia:Supramarginal_gyrus] synonym: "area 40 of Brodmann" EXACT [FMA:68637] synonym: "area 40 of Brodmann-1909" EXACT [BIRNLEX:1773] synonym: "area supramarginalis" EXACT [BIRNLEX:1773] synonym: "B09-40" BROAD OMO:0003000 [BIRNLEX:1773, NIFSTD:SumsDB_abbrevSource] synonym: "B09-40" EXACT [BIRNLEX:1773] synonym: "Brodmann (1909) area 40" EXACT [BIRNLEX:1773] synonym: "Brodmann area 40" EXACT [FMA:68637] synonym: "Brodmann area 40, supramarginal" EXACT [BIRNLEX:1773] synonym: "Supramarginal area 40" EXACT [FMA:68637] xref: BIRNLEX:1773 xref: FMA:68637 xref: neuronames:2408 xref: UMLS:C1272501 {source="BIRNLEX:1773"} xref: Wikipedia:Supramarginal_gyrus is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area relationship: part_of UBERON:0002688 {notes="consider merging many sources treat as synonymous"} ! supramarginal gyrus [Term] id: UBERON:0013589 name: koniocortex namespace: uberon def: "Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 1-3 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex." [http://www.medilexicon.com/medicaldictionary.php?t=47303] xref: neuronames:2471 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0013590 name: cruciate sulcus namespace: uberon def: "A deep groove which runs transversely across the rostro-dorsal surface of the cerebrum and which is one of the landmarks on the cerebral cortex." [http://medical-dictionary.thefreedictionary.com/cruciate+sulcus] synonym: "cruciate sulci" EXACT OMO:0003004 [] is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0013591 name: postsylvian sulcus namespace: uberon is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013592 name: presylvian sulcus namespace: uberon is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013593 name: suprasylvian sulcus namespace: uberon is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013594 name: ectosylvian sulcus namespace: uberon is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013595 name: postlateral sulcus namespace: uberon is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013596 name: brain coronal sulcus namespace: uberon synonym: "coronal sulcus" BROAD INCONSISTENT [] synonym: "coronal sulcus of brain" EXACT [] is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013598 name: accessory nucleus of optic tract namespace: uberon def: "One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions." [http://www.medilexicon.com/medicaldictionary.php?t=61308] synonym: "nuclei accessorii tractus optici" EXACT OMO:0003011 [] synonym: "nucleus of accessory optic system" EXACT [] synonym: "terminal nucleus of accessory optic tract" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=61308] xref: FMA:256154 is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000008 "most vertebrates have at least one AON. Mammals have 4.[ISBN:0471888893]" xsd:string [Term] id: UBERON:0013599 name: dorsal accessory nucleus of optic tract namespace: uberon synonym: "dorsal terminal nucleus of accessory optic tract" EXACT [] synonym: "dorsal terminal nucleus of the accessory optic tract" EXACT [ABA:DT] synonym: "nucleus accessorius posterior tractus optici" EXACT OMO:0003011 [FMA:77651, FMA:TA] synonym: "posterior accessory nucleus of optic tract" EXACT [FMA:77651] synonym: "posterior terminal nucleus of accessory optic tract" EXACT [] xref: BAMS:DT xref: DMBA:16590 xref: FMA:77651 xref: MBA:75 xref: neuronames:1823 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013600 name: lateral accessory nucleus of optic tract namespace: uberon synonym: "lateral terminal nucleus of the accessory optic tract" EXACT [ABA:LT] synonym: "nucleus accessorius lateralis tractus optici" EXACT OMO:0003011 [FMA:77652, FMA:TA] xref: BAMS:LT xref: DHBA:13236 xref: FMA:77652 xref: MBA:66 xref: neuronames:1843 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013601 name: medial accessory nucleus of optic tract namespace: uberon comment: The medial terminal nucleus is usually very prominent but it is reduced in primates (except, curiously, the tarsier), megachiropterans, Cynocephalus and Bradypus. Metatherians have a large medial terminal nucleus[Pettigrew et al. (1989)] synonym: "medial terminal nucleus of the accessory optic tract" EXACT [ABA:MT] synonym: "nucleus accessorius medialis tractus optici" EXACT OMO:0003011 [FMA:77653, FMA:TA] xref: BAMS:MT xref: FMA:77653 xref: MBA:58 xref: neuronames:1069 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013605 name: layer of lateral geniculate body namespace: uberon is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0001926 ! lateral geniculate body [Term] id: UBERON:0013606 name: magnocellular layer of dorsal nucleus of lateral geniculate body namespace: uberon comment: Rods; necessary for the perception of movement, depth, and small differences in brightness[WP] synonym: "lateral geniculate nucleus magnocellular layer" EXACT [] synonym: "magnocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata magnocellularia" BROAD [] synonym: "strata magnocellularia nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76989, FMA:TA] xref: DHBA:10431 xref: FMA:76989 xref: PBA:128013078 is_a: UBERON:0013605 ! layer of lateral geniculate body relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013607 name: parvocellular layer of dorsal nucleus of lateral geniculate body namespace: uberon comment: Cones; long- and medium-wavelength ("red" and "green" cones); necessary for the perception of color and form (fine details).[WP] synonym: "parvocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata parvocellularia" BROAD [] synonym: "strata parvocellularia nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76992, FMA:TA] xref: FMA:76992 xref: PBA:128013091 is_a: UBERON:0013605 ! layer of lateral geniculate body relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013608 name: inferior olive dorsal accessory nucleus namespace: uberon synonym: "dorsal accessory nucleus of inferior olivary complex" EXACT [] xref: EMAPA:37612 {source="MA:th"} xref: MA:0001042 xref: neuronames:750 is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus [Term] id: UBERON:0013609 name: inferior olive medial accessory nucleus namespace: uberon synonym: "medial accessory nucleus of inferior olivary complex" EXACT [] xref: EMAPA:37613 {source="MA:th"} xref: MA:0001044 xref: neuronames:751 is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus [Term] id: UBERON:0013610 name: inferior olive ventral accessory nucleus namespace: uberon synonym: "ventral accessory nucleus of inferior olivary complex" EXACT [] is_a: UBERON:0007244 {source="cjm"} ! inferior olivary nucleus [Term] id: UBERON:0013614 name: fasciculus aberans namespace: uberon def: "The fasciulus aberrans is a distinct bundle of fibers at the dorsal aspect of the anterior commisure. These fibers travel in the internal capsule between the putamen and caudate nuclei, and cross the midline to connect the dorsal neocortex of the two hemispheres. When the fasciculus aberrans is absent, the fibers connecting the neocortex of the two hemispheres takes a diffderent route through the external capsule[Johnson et al., (1982a, 1982b, 1994)]." [MorphoBank:177] is_a: UBERON:0002473 ! intercerebral commissure is_a: UBERON:0005838 {source="cjm"} ! fasciculus of brain is_a: UBERON:0022248 ! cerebral nerve fasciculus [Term] id: UBERON:0013615 name: koniocellular layer of dorsal nucleus of lateral geniculate body namespace: uberon comment: Short-wavelength "blue" cones.[WP] synonym: "konioocellular layer of lateral geniculate nucleus" EXACT [] synonym: "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76988, FMA:TA] xref: FMA:76988 is_a: UBERON:0013605 ! layer of lateral geniculate body relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013646 name: buccal nerve namespace: uberon def: "The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth." [Wikipedia:Buccal_nerve] synonym: "buccinator branch" RELATED [Wikipedia:Buccal_nerve] synonym: "buccinator nerve" EXACT [FMA:53066] synonym: "long buccal nerve" EXACT [FMA:53066] synonym: "long buccal nerve" RELATED [Wikipedia:Buccal_nerve] xref: BAMS:bucn xref: FMA:53066 xref: SCTID:280253000 xref: Wikipedia:Buccal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000375 ! mandibular nerve [Term] id: UBERON:0013647 name: lateral pterygoid nerve namespace: uberon def: "A nerve that innervates the lateral pterygoid muscle." [UBERON:cjm] synonym: "branch of buccal nerve to lateral pterygoid" EXACT [FMA:53107] synonym: "external pterygoid nerve" RELATED [Wikipedia:Lateral_pterygoid_nerve] synonym: "nerve to lateral pterygoid" EXACT [FMA:53107] synonym: "nervus pterygoideus lateralis" EXACT [FMA:TA] xref: FMA:53107 xref: SCTID:48852002 xref: Wikipedia:Lateral_pterygoid_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0013646 ! buccal nerve property_value: UBPROP:0000001 "The nerve to the Pterygoideus externus frequently arises in conjunction with the buccinator nerve, but it may be given off separately from the anterior division of the mandibular nerve. It enters the deep surface of the muscle." xsd:string {source="Wikipedia:Lateral_pterygoid_nerve"} [Term] id: UBERON:0013671 name: nerve ending of of corpus cavernosum maxillaris namespace: uberon synonym: "nerve of palatal organ" BROAD [] is_a: UBERON:0012453 ! nerve ending [Term] id: UBERON:0013682 name: peripheral region of retina namespace: uberon def: "Region of retina that extends from central retina to ora serrata. Peripheral retina is dominated by rods and also has less ganglion cells and is not as thick as central retina. It is responsible for peripheral and night vision." [https://github.com/obophenotype/uberon/issues/1542, https://github.com/obophenotype/uberon/issues/216, https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/, XAO:0004458] synonym: "peripheral retina" EXACT [XAO:0004458] xref: SCTID:264141008 xref: XAO:0004458 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000001 "Anatomical region comprising the peripheral part of the retina[XAO:0004458]." xsd:string {source="XAO:0004458"} [Term] id: UBERON:0013683 name: left dorsal thalamus namespace: uberon def: "A dorsal thalamus that is in_the_left_side_of a diencephalon." [OBOL:automatic] subset: pheno_slim synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 is_a: UBERON:0004703 ! dorsal thalamus property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013684 name: right dorsal thalamus namespace: uberon def: "A dorsal thalamus that is in_the_right_side_of a diencephalon." [OBOL:automatic] subset: pheno_slim synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 is_a: UBERON:0004703 ! dorsal thalamus property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0013693 name: cerebral cortex neuropil namespace: uberon def: "A neuropil that is part of a cerebral cortex [Automatically generated definition]." [OBOL:automatic] synonym: "neuropil of cerebral cortex" EXACT [OBOL:automatic] xref: CALOHA:TS-2396 is_a: UBERON:0002606 ! neuropil relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0013694 name: brain endothelium namespace: uberon def: "Vascular endothelium found in blood vessels of the blood-brain-barrier." [CALOHA:TS-0092] synonym: "cerebromicrovascular endothelium" RELATED [CALOHA:TS-0092] xref: BTO:0001852 xref: BTO:0003248 xref: CALOHA:TS-0092 relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0013733 name: caudal linear nucleus namespace: uberon synonym: "CLi" EXACT OMO:0003000 [PMID:21653852] synonym: "posterior linear nucleus" EXACT [OBOL:automatic] xref: FMA:231003 xref: HBA:9470 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain [Term] id: UBERON:0013734 name: rostral linear nucleus namespace: uberon def: "Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat." [NLX:144319] synonym: "anterior linear nucleus" EXACT [OBOL:automatic] synonym: "RLi" EXACT OMO:0003000 [PMID:16292327] synonym: "rostral linear nucleus of the raphe" RELATED [PMID:21653852] xref: BAMS:LR xref: DHBA:12234 xref: DMBA:16748 xref: HBA:9471 xref: MBA:197 xref: neuronames:1808 xref: NLX:144319 is_a: UBERON:0002308 {source="Obol"} ! nucleus of brain is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 {source="NIFSTD"} ! ventral tegmental area property_value: IAO:0000116 "Brain Info does not list the linear nuclei as part of the ventral tegmental area but as a co-area of the midbrain tegmentum. Am assuming the rostral linear nucleus of the raphe is synonymous, but needs further review. (NIF)" xsd:string [Term] id: UBERON:0013736 name: interfascicular linear nucleus namespace: uberon synonym: "central linear nucleus" RELATED [] synonym: "IF" RELATED OMO:0003000 [PMID:21653852] synonym: "intermediate linear nucleus" RELATED [FMA:77503] xref: DHBA:12262 xref: FMA:77503 xref: HBA:9472 xref: MBA:12 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0013737 name: paranigral nucleus namespace: uberon synonym: "PN" BROAD OMO:0003000 [PMID:21653852] xref: DHBA:12265 xref: FMA:77497 xref: HBA:9474 xref: neuronames:1252 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 {source="FMA"} ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 {source="PMID:21653852"} ! ventral tegmental area [Term] id: UBERON:0013738 name: parabrachial pigmental nucleus namespace: uberon def: "Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human." [NLX:144307] synonym: "parabrachial pigmented nucleus" EXACT [NLX:144307] synonym: "PBP" BROAD OMO:0003000 [PMID:21653852] xref: BAMS:PBP xref: DHBA:12263 xref: FMA:77496 xref: HBA:9473 xref: neuronames:2264 xref: NLX:144307 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 {source="NIF", source="PMID:21653852"} ! ventral tegmental area [Term] id: UBERON:0014169 name: nigrostriatal tract namespace: uberon def: "The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83)." [BIRNLEX:4107] synonym: "comb bundle" EXACT [BIRNLEX:4107] synonym: "comb bundle" RELATED [BIRNLEX:4107] synonym: "nigrostriatal bundle" EXACT [BIRNLEX:4107] synonym: "nigrostriatal bundle" RELATED [BIRNLEX:4107] synonym: "nigrostriatal fibers" EXACT [BIRNLEX:4107] synonym: "nigrostriatal fibers" RELATED [BIRNLEX:4107] synonym: "nigrostriatal tract" EXACT [BIRNLEX:4107] synonym: "nucleus caudalis centralis oculomotorii" RELATED OMO:0003011 [NeuroNames:500] synonym: "nucleus centralis nervi oculomotorii" RELATED OMO:0003011 [NeuroNames:500] synonym: "tegmentum mesencephalicum" RELATED OMO:0003011 [NeuroNames:491] xref: BAMS:ns xref: BAMS:nst xref: BIRNLEX:4107 xref: MBA:102 xref: neuronames:491 xref: neuronames:500 {source="BIRNLEX:4107"} xref: UMLS:C0815010 {source="BIRNLEX:4107"} is_a: UBERON:0007702 {source="NIFSTD"} ! tract of brain property_value: IAO:0000116 "todo - connect this to dopamine related terms" xsd:string [Term] id: UBERON:0014277 name: piriform cortex layer 1 namespace: uberon def: "Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part." [NLXANAT:091003] synonym: "layer 1 of piriform cortex" EXACT [NLXANAT:091003] synonym: "layer 1 of piriform cortex" RELATED [NLXANAT:091003] synonym: "piriform cortex layer 1" EXACT [NLXANAT:091003] synonym: "piriform cortex plexiform layer" EXACT [NLXANAT:091003] synonym: "piriform cortex plexiform layer" RELATED [NLXANAT:091003] synonym: "plexiform layer of piriform cortex" EXACT [NLXANAT:091003] synonym: "plexiform layer of piriform cortex" RELATED [NLXANAT:091003] synonym: "pyriform cortex layer 1" EXACT [NLXANAT:091003] synonym: "pyriform cortex layer 1" RELATED [NLXANAT:091003] xref: NLXANAT:091003 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex [Term] id: UBERON:0014280 name: piriform cortex layer 2 namespace: uberon def: "Middle of three cytoarchitecturally defined layers of the piriform cortex characterized by a compact layer of cell bodies. It can be divided into a superficial part and a more densely packed deep part." [NLXANAT:091006] synonym: "layer 2 of piriform cortex" EXACT [NLXANAT:091006] synonym: "layer 2 of piriform cortex" RELATED [NLXANAT:091006] synonym: "layer II of piriform cortex" EXACT [NLXANAT:091006] synonym: "layer II of piriform cortex" RELATED [NLXANAT:091006] synonym: "piriform cortex layer 2" EXACT [NLXANAT:091006] synonym: "piriform cortex layer II" EXACT [NLXANAT:091006] synonym: "piriform cortex layer II" RELATED [NLXANAT:091006] xref: DHBA:11336 xref: NLXANAT:091006 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8406-3871 [Term] id: UBERON:0014283 name: piriform cortex layer 3 namespace: uberon def: "Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2." [NLXANAT:091009] synonym: "layer 3 of piriform cortex" EXACT [NLXANAT:091009] synonym: "layer 3 of piriform cortex" RELATED [NLXANAT:091009] synonym: "piriform cortex layer 3" EXACT [NLXANAT:091009] xref: NLXANAT:091009 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8406-3871 [Term] id: UBERON:0014284 name: endopiriform nucleus namespace: uberon def: "An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. \nAccording to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum." [NLXANAT:091033] synonym: "endopiriform nucleus" EXACT [NLXANAT:091033] synonym: "layer 4 of piriform cortex" EXACT [NLXANAT:091033] synonym: "layer 4 of piriform cortex" RELATED [NLXANAT:091033] synonym: "layer IV of piriform cortex" EXACT [NLXANAT:091033] synonym: "layer IV of piriform cortex" RELATED [NLXANAT:091033] xref: BAMS:EP xref: DHBA:10371 xref: EMAPA:35311 xref: MBA:942 xref: neuronames:2276 xref: NLXANAT:091033 xref: OldNeuroNames:2276 {source="NLXANAT:091033"} is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002023 {source="NIFSTD"} ! claustrum of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8406-3871 [Term] id: UBERON:0014286 name: dorsal cap of Kooy namespace: uberon synonym: "dorsal cap of kooy" EXACT [NLXANAT:100307] xref: NLXANAT:100307 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] id: UBERON:0014287 name: medial accessory olive namespace: uberon def: "Regional part of the inferior olivary complex." [NLXANAT:100309] synonym: "MAO" EXACT [NLXANAT:100309] synonym: "medial accessory olive" EXACT [NLXANAT:100309] xref: BAMS:IOma xref: neuronames:751 xref: NLXANAT:100309 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] id: UBERON:0014370 name: extrastriate cortex namespace: uberon def: "A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990)." [NLXANAT:200905010] synonym: "extrastriate areas" EXACT [NLXANAT:200905010] synonym: "extrastriate areas" RELATED [NLXANAT:200905010] synonym: "extrastriate cortex" EXACT [NLXANAT:200905010] synonym: "extrastriate cortical area" RELATED [BTO:0004704] synonym: "peristriate cortex" NARROW [Wikipedia:Extrastriate_cortex] xref: BTO:0004704 xref: DHBA:10270 xref: neuronames:1349 xref: NLXANAT:200905010 xref: Wikipedia:Extrastriate_cortex is_a: UBERON:0010009 {source="NIFSTD"} ! aggregate regional part of brain relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8406-3871 [Term] id: UBERON:0014450 name: pretectal nucleus namespace: uberon alt_id: UBERON:0002994 def: "A neural nucleus of the pretectal area (between dorsal thalamus and optic tectum) that receives afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] subset: pheno_slim synonym: "nucleus area pretectalis" RELATED OMO:0003011 [NeuroNames:468] synonym: "nucleus of pretectal area" EXACT [FMA:72401] synonym: "nucleus of the pretectal area" RELATED [NeuroNames:468] synonym: "pretectal area nucleus" EXACT [FMA:72401] synonym: "pretectal nucleus" EXACT [] xref: BAMS:PTA xref: BIRNLEX:864 xref: DHBA:12182 xref: EMAPA:37919 {source="MA:th"} xref: FMA:72401 xref: HBA:9083 xref: neuronames:468 {source="BIRNLEX:864"} xref: SCTID:416164009 xref: UMLS:C0175358 {source="BIRNLEX:864"} is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001944 ! pretectal region property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: RO:0002175 NCBITaxon:7761 property_value: RO:0002175 NCBITaxon:9255 property_value: UBPROP:0000001 "Any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex" xsd:string {source="MP:0009638"} property_value: UBPROP:0000008 "in hagfishes, there are two: the pretectal nucleus and the nucleus of the posterior commissure[ISBN:0471888893]" xsd:string property_value: UBPROP:0000012 "see notes for pretectal region. Note this is midbrain in FMA, midbrain (mesencephalon) in HBA, midbrain in DHBA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0014451 name: tongue taste bud namespace: uberon def: "A taste bud that is located on the tongue, situated on a gustatory papilla." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "gustatory papilla taste bud" EXACT [] synonym: "gustatory papillae taste bud" EXACT [MP:0006260] is_a: UBERON:0001727 ! taste bud [Term] id: UBERON:0014452 name: gustatory epithelium of tongue namespace: uberon def: "A gustatory epithelium that is part of a tongue." [OBOL:automatic] synonym: "lingual gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:4099 xref: UMLS:C1179150 {source="BIRNLEX:4099"} is_a: UBERON:0002926 ! gustatory epithelium [Term] id: UBERON:0014453 name: gustatory epithelium of palate namespace: uberon def: "A gustatory epithelium that is part of a roof of mouth." [OBOL:automatic] synonym: "palatal gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002926 ! gustatory epithelium [Term] id: UBERON:0014463 name: cardiac ganglion namespace: uberon def: "Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery." [ISBN:0-683-40008-8, MP:0003685] subset: human_reference_atlas synonym: "cardiac ganglia" RELATED OMO:0003004 [] synonym: "cardiac ganglia set" EXACT [FMA:77582] synonym: "cardiac ganglion of Wrisberg" EXACT [] synonym: "ganglia cardiaca" EXACT [FMA:TA] synonym: "ganglion of Wrisberg" EXACT [FMA:77582] synonym: "Wrisberg ganglion" EXACT [MP:0003685] xref: EMAPA:36644 xref: FMA:77582 xref: SCTID:57098005 is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0000011 ! parasympathetic nervous system property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery[http://medical-dictionary.thefreedictionary.com/cardiac+ganglion]." xsd:string {source="http://medical-dictionary.thefreedictionary.com/cardiac+ganglion"} [Term] id: UBERON:0014466 name: subarachnoid fissure namespace: uberon xref: FMA:75136 relationship: part_of UBERON:0000315 ! subarachnoid space [Term] id: UBERON:0014468 name: ansoparamedian fissure of cerebellum namespace: uberon def: "Fissure between cerebellar hemispheric lobules VIIBi and VIIBii." [NLXANAT:20081256] synonym: "ansoparamedian fissure" EXACT [NLXANAT:20081256] synonym: "fissura ansoparamedianis" EXACT [FMA:TA] synonym: "fissura lunogracilis" EXACT OMO:0003011 [FMA:75137, FMA:TA] synonym: "lunogracile fissure" EXACT [NLXANAT:20081256] synonym: "lunogracile fissure of cerebellum" EXACT [FMA:75137] xref: BAMS:apf xref: BAMS:apmf xref: DHBA:266441733 xref: FMA:75137 xref: HBA:9413 xref: MBA:43 xref: neuronames:2272 xref: NLXANAT:20081256 is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0014471 name: primary fissure of cerebellum namespace: uberon def: "The monticulus of the cerebellum is divided by the primary fissure (or preclival fissure) into an anterior, raised part, the culmen or summit, and a posterior sloped part, the clivus; the quadrangular lobule is similarly divided." [Wikipedia:Primary_fissure_of_cerebellum] synonym: "fissura preclivalis" EXACT [FMA:TA] synonym: "fissura prima" EXACT OMO:0003011 [FMA:83729, FMA:TA] synonym: "fissura prima cerebelli" EXACT OMO:0003011 [FMA:83729, FMA:TA] synonym: "fissura superior anterior" EXACT OMO:0003011 [FMA:83729, FMA:TA] synonym: "preclival fissure" EXACT [FMA:83729] synonym: "preclival fissure" RELATED [Wikipedia:Primary_fissure_of_cerebellum] synonym: "primary fissure" BROAD [NLXANAT:20081253] synonym: "primary sulcus of cerebellum" EXACT [FMA:83729] xref: BAMS:pfcb xref: FMA:83729 xref: HBA:9410 xref: MBA:1103 xref: neuronames:648 xref: NLXANAT:20081253 xref: SCTID:314164007 xref: Wikipedia:Primary_fissure_of_cerebellum is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0014473 name: precentral fissure of cerebellum namespace: uberon def: "Fissure between cerebellar lobules I and II." [NLXANAT:20081251] synonym: "fissura postlingualis cerebelli" EXACT [FMA:TA] synonym: "fissura praecentralis" EXACT OMO:0003011 [FMA:83731, FMA:TA] synonym: "fissura precentralis cerebelli" EXACT OMO:0003011 [FMA:83731, FMA:TA] synonym: "post-lingual fissure of cerebellum" EXACT [FMA:83731] synonym: "postlingual fissure" EXACT [FMA:83731] synonym: "precentral fissure" EXACT [NLXANAT:20081251] xref: BAMS:pce xref: BAMS:pcn xref: BAMS:prfcb xref: FMA:83731 xref: HBA:9407 xref: MBA:1087 xref: neuronames:651 xref: NLXANAT:20081251 xref: SCTID:18716004 is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebellum property_value: IAO:0000116 "compare with precentral sulcus" xsd:string [Term] id: UBERON:0014474 name: postcentral fissure of cerebellum namespace: uberon synonym: "fissura postcentralis cerebelli" EXACT [FMA:TA] synonym: "fissura praeculminata" EXACT OMO:0003011 [FMA:83732, FMA:TA] synonym: "post-central fissure of cerebellum" EXACT [FMA:83732] synonym: "postcentral fissure" BROAD [] synonym: "postcentral fissure-2" EXACT [FMA:83732] xref: BAMS:pofcb xref: FMA:83732 xref: neuronames:652 is_a: UBERON:0003980 ! cerebellum fissure is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0014521 name: anterodorsal nucleus of medial geniculate body namespace: uberon synonym: "ADMG" BROAD OMO:0003000 [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource] synonym: "anterodorsal nucleus of medial geniculate complex" EXACT [BIRNLEX:1600] synonym: "anterodorsal nucleus of the medial geniculate body" RELATED [NeuroNames:852] synonym: "nucleus corporis geniculati medialis, pars anterodorsalis" RELATED [BIRNLEX:1600] xref: BAMS:MGad xref: BIRNLEX:1600 xref: HBA:4446 xref: neuronames:852 {source="BIRNLEX:1600"} is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body [Term] id: UBERON:0014522 name: dorsolateral oculomotor nucleus namespace: uberon synonym: "dorsolateral nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus dorsalis nervi oculomotorii" EXACT OMO:0003011 [] synonym: "oculomotor nerve dorsolateral nucleus" EXACT [] xref: SCTID:369237002 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001715 ! oculomotor nuclear complex [Term] id: UBERON:0014523 name: oculomotor division of oculomotor nuclear complex namespace: uberon def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements." [ISBN:0471888893] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001715 ! oculomotor nuclear complex property_value: RO:0002175 NCBITaxon:70846 [Term] id: UBERON:0014524 name: electromotor division of oculomotor nuclear complex namespace: uberon def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which has axons terminating in the electric organs." [ISBN:0471888893] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001715 ! oculomotor nuclear complex property_value: RO:0002175 NCBITaxon:70846 [Term] id: UBERON:0014525 name: limb of internal capsule of telencephalon namespace: uberon synonym: "internal capsule subdivision" EXACT [FMA:61951] synonym: "limb of internal capsule" EXACT [] synonym: "subdivision of internal capsule" EXACT [FMA:61951] xref: FMA:61951 xref: SCTID:119245007 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0001887 ! internal capsule of telencephalon [Term] id: UBERON:0014526 name: anterior limb of internal capsule namespace: uberon def: "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus." [NLX:144257] synonym: "anterior internal capsule" RELATED [ISBN:0123813611] synonym: "anterior limb" RELATED [Wikipedia:Anterior_limb_of_internal_capsule] synonym: "capsula interna, pars anterior" EXACT OMO:0003011 [FMA:61952, FMA:TA] synonym: "crus anterius capsulae internae" EXACT OMO:0003011 [FMA:61952, FMA:TA] xref: BAMS:aic xref: DHBA:10582 xref: FMA:61952 xref: neuronames:199 xref: NLX:144257 xref: SCTID:279295005 xref: Wikipedia:Anterior_limb_of_internal_capsule is_a: UBERON:0014525 {source="FMA"} ! limb of internal capsule of telencephalon property_value: UBPROP:0000001 "The anterior limb of internal capsule (or frontal part) contains: (1) fibers running from the thalamus to the frontal lobe; (2) fibers connecting the lentiform and caudate nuclei; (3) fibers connecting the cortex with the corpus striatum; and (4) fibers passing from the frontal lobe through the medial fifth of the base of the cerebral peduncle to the nuclei pontis[Wikipedia:Anterior_limb_of_internal_capsule]." xsd:string {source="Wikipedia:Anterior_limb_of_internal_capsule"} property_value: UBPROP:0000008 "the streaming fibers of the anterior internal capsule separate the caudate nucleus and putamen in the human brain (in the mouse brain the caudoputamen is continuous)[ISBN:0123813611]" xsd:string [Term] id: UBERON:0014527 name: posterior limb of internal capsule namespace: uberon def: "Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM)." [NLX:144258] synonym: "capsula interna, pars posterior" EXACT OMO:0003011 [FMA:61954, FMA:TA] synonym: "crus posterius capsulae internae" EXACT OMO:0003011 [FMA:61954, FMA:TA] synonym: "posterior internal capsule" RELATED [] synonym: "posterior limb" RELATED [Wikipedia:Posterior_limb_of_internal_capsule] synonym: "posterior limb of the internal capsule" RELATED [BAMS:pic] xref: BAMS:pic xref: DHBA:10584 xref: FMA:61954 xref: neuronames:201 xref: NLX:144258 xref: SCTID:279296006 xref: Wikipedia:Posterior_limb_of_internal_capsule is_a: UBERON:0014525 {source="FMA"} ! limb of internal capsule of telencephalon relationship: part_of UBERON:0001887 {source="FMA"} ! internal capsule of telencephalon [Term] id: UBERON:0014528 name: extreme capsule namespace: uberon def: "Thin band of fibers separating the claustrum from the insular cortex." [NLXANAT:1010014] synonym: "band of Baillarger" RELATED [Wikipedia:Extreme_capsule] synonym: "capsula extrema" RELATED [Wikipedia:Extreme_capsule] xref: BAMS:ex xref: BAMS:exc xref: DHBA:10574 xref: FMA:61960 xref: HBA:9246 xref: neuronames:254 xref: NLXANAT:1010014 xref: SCTID:279301006 xref: Wikipedia:Extreme_capsule is_a: UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter property_value: UBPROP:0000001 "Extreme capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The extreme capsule is a sheet-like fiber bundle located lateral to the clausturm and medial to the insula which projects dorsally to the white matter underlying the cerebral cortex[FMA:61960]." xsd:string {source="FMA:61960"} property_value: UBPROP:0000001 "The extreme capsule is a long association fiber pathway of white matter in the brain that provides bidirectional communication between such areas as the claustrum and the insular cortex, and the inferior frontal gyrus and the middle-posterior portion of the superior temporal gyrus. Its fibers are near to but can be distinguished by MRI tractography from adjacent fiber bundles such as the uncinate fasciculus, the external capsule, the arcuate fascicle, and the medial, inferior and superior longitudinal fascicles. Given its bidirectional connection between the Broca's and Werniche's speech areas it could have a role in language[Wikipedia:Extreme_capsule, Wikipedia:Extreme_capsule]." xsd:string {source="Wikipedia:Extreme_capsule, Wikipedia:Extreme_capsule"} property_value: UBPROP:0000001 "Thin band of fibers separating the claustrum from the insular cortex" xsd:string {source="NLXANAT:1010014"} [Term] id: UBERON:0014529 name: lenticular fasciculus namespace: uberon def: "The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus." [Wikipedia:Lenticular_fasciculus] synonym: "dorsal division of ansa lenticularis" EXACT [FMA:61976] synonym: "fasciculus lenticularis" EXACT [FMA:TA] synonym: "fasciculus lenticularis" RELATED OMO:0003011 [Wikipedia:Lenticular_fasciculus] synonym: "fasciculus lenticularis [h2]" EXACT [FMA:TA] synonym: "field H2" RELATED [NLXANAT:1010015] synonym: "field H2 of Forel" RELATED [NLXANAT:1010015] synonym: "Forel's field H2" RELATED [NLXANAT:1010015] synonym: "forel's field h2" EXACT [FMA:62067] synonym: "lenticular fasciculus" EXACT [FMA:61976, NLXANAT:1010015] synonym: "lenticular fasciculus [h2]" EXACT [FMA:62067] synonym: "lenticular fasciculus of diencephalon" EXACT [FMA:62067] synonym: "lenticular fasciculus of telencephalon" EXACT [FMA:61976] synonym: "tegmental area h2" EXACT [FMA:62067] xref: BAMS:lenf_(H2) xref: DHBA:10585 xref: FMA:61976 xref: FMA:62067 xref: HBA:265505158 xref: neuronames:3064 xref: NLXANAT:1010015 xref: SCTID:5677006 xref: Wikipedia:Lenticular_fasciculus is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain is_a: UBERON:0022254 ! ventral thalamic fasciculus relationship: part_of UBERON:0001900 {source="NIFSTD"} ! ventral thalamus property_value: UBPROP:0000012 "FMA appears to divide this into diencephalon and telencephalon parts" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0014530 name: white matter lamina of neuraxis namespace: uberon synonym: "lamina of neuraxis" BROAD [FMA:83856] synonym: "neuraxis lamina" BROAD [FMA:83856] xref: FMA:83856 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0014531 name: white matter lamina of diencephalon namespace: uberon synonym: "diencephalon lamina" BROAD [FMA:62449] synonym: "lamina of diencephalon" BROAD [FMA:62449] xref: FMA:62449 is_a: UBERON:0014530 ! white matter lamina of neuraxis relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0014532 name: white matter lamina of cerebral hemisphere namespace: uberon synonym: "cerebral hemisphere lamina" BROAD [FMA:67951] synonym: "lamina of cerebral hemisphere" BROAD [FMA:67951] xref: FMA:67951 is_a: UBERON:0014530 ! white matter lamina of neuraxis relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0014533 name: medullary lamina of thalamus namespace: uberon def: "Medullary laminae of thalamus are layers of myelinated fibres that appear on cross sections of the thalamus. They also are commonly referred to as laminae medullares thalami or medullary layers of thalamus. The specific layers are: Lamina medullaris lateralis (external medullary lamina) - separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus; Lamina medullaris medialis (internal medullary lamina) - positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral)." [Wikipedia:Medullary_laminae_of_thalamus] synonym: "external medullary lamina" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "internal medullary lamina" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "laminae medullares thalami" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "medullary layer of thalamus" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "medullary layers of thalamus" RELATED [Wikipedia:Medullary_laminae_of_thalamus] xref: BAMS:Lam.med.thal xref: Wikipedia:Medullary_laminae_of_thalamus is_a: UBERON:0014531 ! white matter lamina of diencephalon relationship: part_of UBERON:0010225 ! thalamic complex [Term] id: UBERON:0014534 name: external medullary lamina of thalamus namespace: uberon def: "A medullary lamina that separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus." [Wikipedia:Medullary_laminae_of_thalamus] synonym: "external medullary lamina" EXACT [FMA:62078] synonym: "external medullary lamina of the thalamus" RELATED [BAMS:em, BAMS:eml] synonym: "lamella medullaris externa" EXACT OMO:0003011 [FMA:62078, FMA:TA] synonym: "lamina medullaris externa" EXACT OMO:0003011 [FMA:62078, FMA:TA] synonym: "lamina medullaris externa thalami" EXACT OMO:0003011 [FMA:62078, FMA:TA] synonym: "lamina medullaris lateralis" BROAD OMO:0003011 [] synonym: "lamina medullaris lateralis thalami" EXACT OMO:0003011 [FMA:TA] synonym: "lamina medullaris thalami externa" EXACT OMO:0003011 [FMA:62078, FMA:TA] xref: BAMS:em xref: BAMS:eml xref: DHBA:12038 xref: FMA:62078 xref: HBA:265505098 xref: MBA:1092 xref: neuronames:367 xref: SCTID:369179004 is_a: UBERON:0014533 ! medullary lamina of thalamus [Term] id: UBERON:0014537 name: periamygdaloid cortex namespace: uberon def: "Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division." [NLX:144210] synonym: "periamygdaloid area" RELATED [NLX:144210] synonym: "periamygdaloid cortex" EXACT [NLX:144210] xref: BAMS:PAC xref: MESH:D066277 xref: NLX:144210 xref: Wikipedia:Periamygdaloid_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex [Term] id: UBERON:0014538 name: subdivision of spinal cord central canal namespace: uberon def: "A subdivision of the central canal of the spinal cord along its anterior-posterior axis. This is typically subdivided into cervical, thoracic, lumbar and sacral segments." [http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "regional part of spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:717] xref: BIRNLEX:717 relationship: part_of UBERON:0002291 ! central canal of spinal cord [Term] id: UBERON:0014539 name: precommissural fornix of forebrain namespace: uberon def: "Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei." [BIRNLEX:1033, https://github.com/obophenotype/uberon/issues/1277] synonym: "fornix precommissuralis" EXACT OMO:0003011 [FMA:61967, FMA:TA] synonym: "precommissural fornix" EXACT [BIRNLEX:1033] xref: BAMS:fpr xref: BAMS:fxpr xref: BAMS:pcf xref: BAMS:pcfx xref: BIRNLEX:1033 xref: FMA:61967 xref: neuronames:270 xref: UMLS:C0175237 {source="BIRNLEX:1033"} is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0000052 ! fornix of brain [Term] id: UBERON:0014540 name: white matter lamina of cerebellum namespace: uberon def: "The white laminae of cerebellum is subdivision of the cerebellar cortex comprised of myelinated axons lying deep to the granule cell layer of the cerebellar cortex." [http://neurolex.org/wiki/Category\:White_laminae_of_cerebellum] synonym: "isthmus cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cingulatus" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus of gyrus fornicatus" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus of the cingulate gyrus" RELATED [NeuroNames:163] synonym: "isthmus-2" RELATED OMO:0003011 [NeuroNames:163] synonym: "lamina alba of cerebellar cortex" EXACT [] synonym: "laminae albae of cerebellar cortex" EXACT [] synonym: "laminae albae of cerebellar cortex" RELATED OMO:0003004 [BIRNLEX:1105] synonym: "white lamina of cerebellum" EXACT [] synonym: "white laminae of cerebellum" EXACT OMO:0003004 [BIRNLEX:1105] xref: BIRNLEX:1105 xref: neuronames:163 {source="BIRNLEX:1105"} xref: SCTID:362413004 xref: UMLS:C0228472 {source="BIRNLEX:1105"} is_a: UBERON:0014530 ! white matter lamina of neuraxis relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0014541 name: thoracic division of spinal cord central canal namespace: uberon def: "Part of spinal cord central canal contained in the thoracic spinal cord. It is continuous rostrally with the cervical spinal cord central canal and caudally with the lumbar spinal cord central canal." [BIRNLEX:1395] subset: human_reference_atlas synonym: "thoracic spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1395] xref: BIRNLEX:1395 xref: FMA:321588 xref: SCTID:71118002 xref: UMLS:C0228637 {source="BIRNLEX:1395"} is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014542 name: cervical division of cord spinal central canal namespace: uberon def: "Part of central canal contained within the cervical spinal cord. It is continuous caudally with the thoracic spinal cord central canal and rostrally with the fourth ventricle of the brain via the obex." [BIRNLEX:1511] synonym: "cervical spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1511] xref: BIRNLEX:1511 xref: FMA:321590 xref: SCTID:280403009 xref: UMLS:C0228620 {source="BIRNLEX:1511"} is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal [Term] id: UBERON:0014543 name: lumbar division of spinal cord central canal namespace: uberon def: "Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord." [BIRNLEX:1604] subset: human_reference_atlas synonym: "lumbar spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1604] xref: BIRNLEX:1604 xref: FMA:321589 xref: SCTID:280406001 xref: UMLS:C0228644 {source="BIRNLEX:1604"} is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014544 name: frontomarginal sulcus namespace: uberon def: "A superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN)." [BIRNLEX:4000] synonym: "FMS" BROAD OMO:0003000 [BIRNLEX:4000, NIFSTD:SumsDB_abbrevSource] synonym: "fronto marginal sulcus" RELATED [BAMS:frs] synonym: "frontomarginal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4000] synonym: "sulcus fronto-marginalis" RELATED OMO:0003011 [NeuroNames:1614] synonym: "sulcus frontomarginalis" RELATED [BIRNLEX:4000] xref: BAMS:frs xref: BIRNLEX:4000 xref: DHBA:146034792 xref: HBA:9363 xref: neuronames:1614 {source="BIRNLEX:4000"} xref: UMLS:C0262269 {source="BIRNLEX:4000"} is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0014547 name: sacral division of spinal cord central canal namespace: uberon def: "Part of spinal cord central canal contained in the sacral spinal cord. It is continuous rostrally with the spinal cord central canal of the lumbar cord." [NLXANAT:1010008] subset: human_reference_atlas synonym: "lumbosacral spinal cord central canal" RELATED [] synonym: "sacral spinal cord central canal" EXACT HUMAN_PREFERRED [NLXANAT:1010008] xref: FMA:321696 xref: NLXANAT:1010008 xref: SCTID:362450003 is_a: UBERON:0014538 ! subdivision of spinal cord central canal property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014548 name: pyramidal layer of CA1 namespace: uberon def: "CA1 part of stratum pyramidale hippocampi." [BIRNLEX:4110] synonym: "CA1 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4110] synonym: "CA1 pyramidal cell layer" RELATED [BIRNLEX:4110] synonym: "CA1 stratum pyramidale" RELATED [BIRNLEX:4110] synonym: "CA1 stratum pyramidale hippocampi" EXACT [BIRNLEX:4110] synonym: "CA1 stratum pyramidale hippocampi" RELATED [BIRNLEX:4110] synonym: "field CA1, pyramidal layer" EXACT [ABA:CA1sp] synonym: "stratum pyramidale of CA1" EXACT [PBA:10060] synonym: "stratum pyramidale of the CA1 field" EXACT [NeuroNames:2940] xref: BIRNLEX:4110 xref: DMBA:16133 xref: EMAPA:35196 xref: FMA:277868 xref: MA:0003186 xref: MBA:407 xref: neuronames:2940 xref: PBA:10060 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer [Term] id: UBERON:0014549 name: pyramidal layer of CA2 namespace: uberon def: "Part of pyramidal cell layer in area CA2, lying superficial to the CA2 stratum oriens, and deep to the stratum radiatum of CA2, continuous with the pyramidal cell layers of CA1 and CA3." [BIRNLEX:4111] synonym: "CA2 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4111] synonym: "CA2 stratum pyramidale hippocampi" EXACT [BIRNLEX:4111] synonym: "field CA2, pyramidal layer" EXACT [ABA:CA2sp] synonym: "stratum pyramidale of CA2" EXACT [PBA:10065] synonym: "stratum pyramidale of the CA2 field" EXACT [NeuroNames:2945] xref: BIRNLEX:4111 xref: EMAPA:36480 xref: FMA:277870 xref: MBA:446 xref: neuronames:2945 xref: PBA:10065 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer [Term] id: UBERON:0014550 name: pyramidal layer of CA3 namespace: uberon def: "A layer of hippocampal field that is part of a hippocampus pyramidal layer and is part of a CA3 field of hippocampus." [OBOL:automatic] synonym: "CA3 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4112] synonym: "CA3 stratum pyramidale hippocampi" EXACT [BIRNLEX:4112] synonym: "field CA3, pyramidal layer" EXACT [ABA:CA3sp] synonym: "stratum pyramidale of CA3" EXACT [PBA:10070] synonym: "stratum pyramidale of the CA3 field" EXACT [NeuroNames:2950] xref: BIRNLEX:4112 xref: EMAPA:36448 xref: FMA:277872 xref: MBA:495 xref: neuronames:2950 xref: PBA:10070 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer [Term] id: UBERON:0014551 name: CA2 stratum oriens namespace: uberon def: "Part of stratum oriens lying in area CA2 deep to the CA2 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus[Modified from NIFSTD by CJM]." [BIRNLEX:4115, UBERON:cjm] synonym: "CA2 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4115] synonym: "CA2 stratum oriens" EXACT [BIRNLEX:4115] synonym: "oriens layer of CA2 field" EXACT [FMA:277858] synonym: "stratum oriens of the CA2 field" EXACT [NeuroNames:2944] xref: BAMS:so xref: BIRNLEX:4115 xref: DMBA:16138 xref: FMA:277858 xref: MBA:438 xref: neuronames:2944 xref: PBA:10064 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens [Term] id: UBERON:0014552 name: CA1 stratum oriens namespace: uberon def: "Part of stratum oriens lying in area CA1, superficial to the alveus of CA1 and deep to the pyramidal cell layer of CA1. It is continuous with the stratum oriens of CA2 and bounded by the subiculum." [BIRNLEX:4116] synonym: "CA1 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4116] synonym: "CA1 stratum oriens" EXACT [BIRNLEX:4116] synonym: "oriens layer of CA1 field" EXACT [FMA:277856] synonym: "stratum oriens of the CA1 field" EXACT [NeuroNames:2939] xref: BAMS:so xref: BIRNLEX:4116 xref: DMBA:16132 xref: FMA:277856 xref: MBA:399 xref: neuronames:2939 xref: PBA:10059 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens [Term] id: UBERON:0014553 name: CA3 stratum oriens namespace: uberon def: "Part of stratum oriens lying in area CA3 deep to the CA3 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus." [BIRNLEX:4117] synonym: "CA3 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4117] synonym: "CA3 stratum oriens" EXACT [BIRNLEX:4117] synonym: "oriens layer of CA3 field" EXACT [FMA:277860] synonym: "stratum oriens of the CA3 field" EXACT [NeuroNames:2949] xref: BAMS:so xref: BIRNLEX:4117 xref: DMBA:16142 xref: FMA:277860 xref: MBA:486 xref: neuronames:2949 xref: PBA:10069 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens [Term] id: UBERON:0014554 name: CA1 stratum radiatum namespace: uberon def: "Part of stratum radiatum lying in area CA1, superficial to the CA1 pyramidal cell layer and deep to the CA1 stratum lucidum-moleculare, continuous with the stratum radiatum of CA2 and bounded by the subiculum. It contains the Schaffer collateral projection from CA3." [BIRNLEX:4119] synonym: "CA1 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4119] synonym: "CA1 stratum radiatum" EXACT [BIRNLEX:4119] synonym: "radiate layer of CA1 field" EXACT [FMA:277862] synonym: "stratum radiatum of the CA1 field" EXACT [NeuroNames:2941] xref: BAMS:sr xref: BIRNLEX:4119 xref: DMBA:16134 xref: FMA:277862 xref: MBA:415 xref: neuronames:2941 xref: PBA:10061 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum [Term] id: UBERON:0014555 name: CA2 stratum radiatum namespace: uberon def: "Part of stratum radiatum in area CA2, lying superficial to the pyramidal cell layer and deep to CA2 stratum lacunosum-moleculare, continuous with the stratum radiatum of CA1 and CA3." [BIRNLEX:4120] synonym: "CA2 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4120] synonym: "CA2 stratum radiatum" EXACT [BIRNLEX:4120] synonym: "radiate layer of CA2 field" EXACT [FMA:277864] synonym: "stratum radiatum of the CA2 field" EXACT [NeuroNames:2946] xref: BAMS:sr xref: BIRNLEX:4120 xref: DMBA:16140 xref: FMA:277864 xref: MBA:454 xref: neuronames:2946 xref: PBA:10066 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum [Term] id: UBERON:0014556 name: CA3 stratum radiatum namespace: uberon def: "Part of stratum radiatum in area CA3, lying superficial to the stratum lucidum and deep to CA3 stratum lacunosum-moleculare." [BIRNLEX:4121] synonym: "CA3 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4121] synonym: "CA3 stratum radiatum" EXACT [BIRNLEX:4121] synonym: "radiate layer of CA3 field" EXACT [FMA:277866] synonym: "stratum radiatum of the CA3 field" EXACT [NeuroNames:2952] xref: BAMS:sr xref: BIRNLEX:4121 xref: DMBA:16145 xref: FMA:277866 xref: MBA:504 xref: neuronames:2952 xref: PBA:10072 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum [Term] id: UBERON:0014557 name: CA1 stratum lacunosum moleculare namespace: uberon def: "Part of stratum lacunosum-moleculare lying in area CA1, superficial to CA1 stratum radiatum and bounded by the pial surface, continuous with stratum lacunosum-moleculare of CA2 and the subiculum stratum moleculare." [BIRNLEX:4123] synonym: "CA1 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4123] synonym: "CA1 stratum lacunosum moleculare" EXACT [BIRNLEX:4123] synonym: "lacunar-molecular layer of CA1 field" EXACT [FMA:277850] synonym: "stratum lacunosum moleculare of the CA1 field" EXACT [NeuroNames:2942] xref: BAMS:slm xref: BIRNLEX:4123 xref: DMBA:16135 xref: FMA:277850 xref: MBA:391 xref: neuronames:2942 xref: PBA:10062 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare [Term] id: UBERON:0014558 name: CA2 stratum lacunosum moleculare namespace: uberon def: "Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1." [BIRNLEX:4124] synonym: "CA2 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4124] synonym: "CA2 stratum lacunosum moleculare" EXACT [BIRNLEX:4124] synonym: "lacunar-molecular layer of CA2 field" EXACT [FMA:277852] synonym: "stratum lacunosum moleculare of the CA2 field" EXACT [NeuroNames:2947] xref: BAMS:slm xref: BIRNLEX:4124 xref: DMBA:16137 xref: FMA:277852 xref: MBA:431 xref: neuronames:2947 xref: PBA:10067 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare [Term] id: UBERON:0014559 name: CA3 stratum lacunosum moleculare namespace: uberon def: "Part of stratum lacunosum-moleculare in area CA3. It is bounded by the stratum lacunosum-moleculare of CA2 and CA1. It is bounded superficially by the pial surface and deep by the CA3 stratum radiatum. It is continuous with the stratum lacunosum-moleculare of CA2." [BIRNLEX:4125] synonym: "CA3 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4125] synonym: "CA3 stratum lacunosum moleculare" EXACT [BIRNLEX:4125] synonym: "lacunar-molecular layer of CA3 field" EXACT [FMA:277854] synonym: "stratum lacunosum moleculare of the CA3 field" EXACT [NeuroNames:2953] xref: BAMS:slm xref: BIRNLEX:4125 xref: DMBA:16146 xref: FMA:277854 xref: MBA:471 xref: neuronames:2953 xref: PBA:10073 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare [Term] id: UBERON:0014560 name: CA3 stratum lucidum namespace: uberon def: "A layer of hippocampal field that is part of a CA3 field of hippocampus and is part of a hippocampus stratum lucidum." [OBOL:automatic] synonym: "CA3 stratum lucidum" EXACT [NLXANAT:1005040] synonym: "stratum lucidum of the CA3 field" EXACT [NeuroNames:2951] xref: BAMS:slu xref: DMBA:16144 xref: MBA:479 xref: neuronames:2951 xref: NLXANAT:1005040 xref: PBA:10071 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0003883 ! CA3 field of hippocampus relationship: part_of UBERON:0007637 ! hippocampus stratum lucidum [Term] id: UBERON:0014567 name: layer of hippocampal field namespace: uberon def: "A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1)." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/297] subset: non_informative synonym: "hippocampal field layer" EXACT [] relationship: part_of UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0014568 name: dorsal tegmental nucleus pars dorsalis namespace: uberon def: "Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations." [NLXANAT:20090407] synonym: "dorsal tegmental nucleus of Gudden pars dorsalis" RELATED [NLXANAT:20090407] synonym: "dorsal tegmental nucleus pars dorsalis" EXACT [NLXANAT:20090407] xref: NLXANAT:20090407 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002143 {source="NIFSTD"} ! dorsal tegmental nucleus property_value: UBPROP:0000008 "According to Hayakawa and Zuo (1983), the TDD cannot be clearly identified in the tree shrew or in human" xsd:string [Term] id: UBERON:0014569 name: dorsal tegmental nucleus pars ventralis namespace: uberon def: "Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains." [NLXANAT:20090408] synonym: "dorsal tegmental nucleus of Gudden pars ventralis" RELATED [NLXANAT:20090408] synonym: "dorsal tegmental nucleus pars ventralis" EXACT [NLXANAT:20090408] synonym: "pars ventralis of the dorsal tegmental nucleus" RELATED [NLXANAT:20090408] synonym: "pars ventralis of the dorsal tegmental nucleus of Gudden" RELATED [NLXANAT:20090408] xref: NLXANAT:20090408 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002143 {source="NIFSTD"} ! dorsal tegmental nucleus property_value: UBPROP:0000008 "According to Hayakawa and Zuo (1983), the TDV cannot be clearly identified in the tree shrew or in human" xsd:string [Term] id: UBERON:0014570 name: CA1 alveus namespace: uberon def: "CA1 portion of the alveus." [NLXANAT:1005038] synonym: "alveus of the CA1 field" EXACT [NeuroNames:2938] xref: FMA:277874 xref: neuronames:2938 xref: NLXANAT:1005038 is_a: UBERON:0035786 ! layer of CA1 field relationship: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0014571 name: CA3 alveus namespace: uberon def: "Part of alveus lying within hippocampal sector CA3." [NLXANAT:1005039] synonym: "alveus of the CA3 field" EXACT [NeuroNames:2948] xref: FMA:277878 xref: neuronames:2948 xref: NLXANAT:1005039 is_a: UBERON:0035788 ! layer of CA3 field relationship: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0014589 name: anterior nucleus of hypothalamus anterior part namespace: uberon synonym: "AHNa" BROAD OMO:0003000 [BIRNLEX:1109, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus anterior part" RELATED [BAMS:AHNa] synonym: "anterior hypothalamic nucleus, anterior part" RELATED [BAMS:AHNa] synonym: "anterior nucleus of hypothalamus anterior part" EXACT HUMAN_PREFERRED [BIRNLEX:1109] xref: BAMS:AHNa xref: BIRNLEX:1109 xref: MBA:700 xref: neuronames:1903 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014590 name: anterior nucleus of hypothalamus central part namespace: uberon synonym: "AHNc" BROAD OMO:0003000 [BIRNLEX:1119, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic area central part" RELATED [BAMS:AHC] synonym: "anterior hypothalamic area, central part" RELATED [BAMS:AHC] synonym: "anterior hypothalamic central part" RELATED [BAMS:AHNc] synonym: "anterior hypothalamic nucleus central part" RELATED [BAMS:AHNc] synonym: "anterior hypothalamic nucleus, central part" RELATED [BAMS:AHC, BAMS:AHNc] synonym: "anterior nucleus of hypothalamus central part" EXACT HUMAN_PREFERRED [BIRNLEX:1119] xref: BAMS:AHC xref: BAMS:AHNc xref: BIRNLEX:1119 xref: MBA:708 xref: neuronames:1932 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014591 name: anterior nucleus of hypothalamus posterior part namespace: uberon synonym: "AHNp" BROAD OMO:0003000 [BIRNLEX:1125, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus posterior part" RELATED [BAMS:AHNp] synonym: "anterior hypothalamic nucleus, posterior part" RELATED [BAMS:AHNp] synonym: "anterior hypothalamic posterior part" RELATED [BAMS:AHNp] synonym: "anterior nucleus of hypothalamus posterior part" EXACT HUMAN_PREFERRED [BIRNLEX:1125] xref: BAMS:AHNp xref: BIRNLEX:1125 xref: DMBA:16240 xref: MBA:724 xref: neuronames:1930 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014592 name: anterior nucleus of hypothalamus dorsal part namespace: uberon synonym: "AHNd" BROAD OMO:0003000 [BIRNLEX:1139, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic dorsal part" RELATED [BAMS:AHNd] synonym: "anterior hypothalamic nucleus dorsal part" RELATED [BAMS:AHNd] synonym: "anterior hypothalamic nucleus, dorsal part" RELATED [BAMS:AHD, BAMS:AHNd] synonym: "anterior nucleus of hypothalamus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1139] xref: BAMS:AHD xref: BAMS:AHNd xref: BIRNLEX:1139 xref: MBA:716 xref: neuronames:1929 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014593 name: tuberomammillary nucleus dorsal part namespace: uberon synonym: "TMd" BROAD OMO:0003000 [BIRNLEX:1290, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1290] synonym: "tuberomammillary nucleus, dorsal part" RELATED [BAMS:TMd] xref: BAMS:TMd xref: BIRNLEX:1290 xref: MBA:1126 xref: neuronames:1881 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleus [Term] id: UBERON:0014594 name: tuberomammillary nucleus ventral part namespace: uberon synonym: "TMv" BROAD OMO:0003000 [BIRNLEX:1294, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus ventral part" EXACT HUMAN_PREFERRED [BIRNLEX:1294] xref: BAMS:TMv xref: BIRNLEX:1294 xref: MBA:1 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleus [Term] id: UBERON:0014595 name: paraventricular nucleus of the hypothalamus descending division - medial parvocellular part, ventral zone namespace: uberon synonym: "paraventricular hypothalamic nucleus medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1342] synonym: "paraventricular nucleus of the hypothalamus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "PVHmpv" BROAD OMO:0003000 [BIRNLEX:1342, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHmpv xref: BIRNLEX:1342 xref: HBA:4576 xref: MBA:464 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014596 name: paraventricular nucleus of the hypothalamus descending division - dorsal parvocellular part namespace: uberon synonym: "paraventricular hypothalamic nucleus dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1348] synonym: "paraventricular nucleus of the hypothalamus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "PVHdp" BROAD OMO:0003000 [BIRNLEX:1348, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHdp xref: BIRNLEX:1348 xref: HBA:4577 xref: MBA:439 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014597 name: paraventricular nucleus of the hypothalamus descending division - lateral parvocellular part namespace: uberon synonym: "paraventricular hypothalamic nucleus lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "paraventricular hypothalamic nucleus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1354] synonym: "paraventricular nucleus of the hypothalamus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "PVHlp" BROAD OMO:0003000 [BIRNLEX:1354, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHlp xref: BIRNLEX:1354 xref: HBA:4578 xref: MBA:455 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014598 name: paraventricular nucleus of the hypothalamus descending division - forniceal part namespace: uberon synonym: "paraventricular hypothalamic nucleus forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular hypothalamic nucleus, descending division, forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular nucleus of the hypothalamus descending division - forniceal part" EXACT HUMAN_PREFERRED [BIRNLEX:1374] synonym: "paraventricular nucleus of the hypothalamus, descending division, forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular nucleus of the hypothalamus, parvicellular division forniceal part" RELATED [BAMS:PVHf] synonym: "PVHf" BROAD OMO:0003000 [BIRNLEX:1374, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHf xref: BIRNLEX:1374 xref: HBA:4579 xref: MBA:447 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division [Term] id: UBERON:0014599 name: paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part namespace: uberon synonym: "paraventricular hypothalamic nucleus anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1384] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "PVHam" BROAD OMO:0003000 [BIRNLEX:1384, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHam xref: BIRNLEX:1384 xref: HBA:4581 xref: MBA:47 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division [Term] id: UBERON:0014600 name: paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part namespace: uberon synonym: "paraventricular hypothalamic nucleus medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1388] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "PVHmm" BROAD OMO:0003000 [BIRNLEX:1388, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHmm xref: BIRNLEX:1388 xref: HBA:4582 xref: MBA:79 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division [Term] id: UBERON:0014601 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part namespace: uberon synonym: "paraventricular hypothalamic nucleus posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1394] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "PVHpm" BROAD OMO:0003000 [BIRNLEX:1394, NIFSTD:Swanson-rat-1998_abbrevSource] xref: BAMS:PVHpm xref: BIRNLEX:1394 xref: HBA:4583 xref: MBA:103 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division [Term] id: UBERON:0014602 name: paraventricular nucleus of the hypothalamus descending division namespace: uberon synonym: "paraventricular hypothalamic nucleus, descending division" RELATED [BAMS:PVHd] synonym: "paraventricular nucleus of the hypothalamus descending division" EXACT HUMAN_PREFERRED [BIRNLEX:1413] synonym: "paraventricular nucleus of the hypothalamus, descending division" RELATED [BAMS:PVHd] synonym: "PVHd" BROAD OMO:0003000 [BIRNLEX:1413, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHd xref: BIRNLEX:1413 xref: DHBA:10477 xref: HBA:4575 xref: MBA:63 xref: neuronames:3229 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014603 name: paraventricular nucleus of the hypothalamus magnocellular division namespace: uberon synonym: "paraventricular hypothalamic nucleus magnocellular division" RELATED [BAMS:PVHm] synonym: "paraventricular hypothalamic nucleus, magnocellular division" RELATED [BAMS:PVHm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1419] synonym: "paraventricular nucleus of the hypothalamus, magnocellular division" RELATED [BAMS:PVHm] synonym: "PVHm" BROAD OMO:0003000 [BIRNLEX:1419, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHm xref: BIRNLEX:1419 xref: DHBA:10478 xref: HBA:4580 xref: MBA:71 xref: neuronames:3230 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014604 name: paraventricular nucleus of the hypothalamus parvocellular division namespace: uberon synonym: "paraventricular hypothalamic nucleus parvicellular division" RELATED [BAMS:PVHp] synonym: "paraventricular hypothalamic nucleus, parvicellular division" RELATED [BAMS:PVHp] synonym: "paraventricular nucleus of the hypothalamus parvicellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1426] synonym: "paraventricular nucleus of the hypothalamus, parvicellular division" RELATED [BAMS:PVHp] synonym: "PVHp" BROAD OMO:0003000 [BIRNLEX:1426, NIFSTD:Swanson-rat-1992_abbrevSource] xref: BAMS:PVHp xref: BIRNLEX:1426 xref: DHBA:10479 xref: HBA:4586 xref: MBA:94 xref: neuronames:3231 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014605 name: fundus striati namespace: uberon def: "The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia)." [NLX:144261] synonym: "fundus of striatum" RELATED [BAMS:FS] synonym: "fundus of the striatum" RELATED [NLX:144261] synonym: "fundus striati" EXACT [NLX:144261] synonym: "striatal fundus" RELATED [NLX:144261] xref: BAMS:FS xref: BAMS:FStr xref: MBA:998 xref: neuronames:1784 xref: neuronames:2158 xref: NLX:144261 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0005403 {source="ABA"} ! ventral striatum [Term] id: UBERON:0014607 name: thoracic spinal cord lateral horn namespace: uberon def: "A spinal cord lateral horn that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord intermediate horn" RELATED [BIRNLEX:1397] synonym: "thoracic spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1397] xref: BIRNLEX:1397 xref: SCTID:367875001 xref: UMLS:C0228631 {source="BIRNLEX:1397"} xref: UMLS:C1288551 {source="BIRNLEX:1397"} is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014608 name: inferior occipital gyrus namespace: uberon subset: human_reference_atlas synonym: "gyrus occipitalis inferior" RELATED OMO:0003011 [NeuroNames:156] synonym: "gyrus occipitalis tertius" RELATED OMO:0003011 [NeuroNames:156] synonym: "inferior occipital gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1399] xref: BAMS:IOG xref: BAMS:O3 xref: BIRNLEX:1399 xref: DHBA:12153 xref: FMA:273129 xref: HBA:4205 xref: neuronames:156 {source="BIRNLEX:1399"} xref: SCTID:279183001 xref: UMLS:C1110643 {source="BIRNLEX:1399"} is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014609 name: thoracic spinal cord dorsal horn namespace: uberon def: "A dorsal horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1404] synonym: "thoracic spinal cord posterior horn" RELATED [BIRNLEX:1404] xref: BIRNLEX:1404 xref: SCTID:362442007 xref: UMLS:C0228628 {source="BIRNLEX:1404"} is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014610 name: thoracic spinal cord ventral horn namespace: uberon def: "A ventral horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord anterior horn" RELATED [BIRNLEX:1410] synonym: "thoracic spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1410] xref: BIRNLEX:1410 xref: SCTID:367876000 xref: UMLS:C0228632 {source="BIRNLEX:1410"} xref: UMLS:C1288552 {source="BIRNLEX:1410"} is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014611 name: apex of thoracic spinal cord dorsal horn namespace: uberon subset: human_reference_atlas synonym: "apex of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1427] synonym: "apex of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1427] xref: BIRNLEX:1427 xref: SCTID:367877009 xref: UMLS:C0228629 {source="BIRNLEX:1427"} relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014612 name: substantia gelatinosa of thoracic spinal cord dorsal horn namespace: uberon def: "Substantia gelatinosa of thoracic spinal cord posterior horn." [BIRNLEX:1432] subset: human_reference_atlas synonym: "substantia gelatinosa of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1432] synonym: "substantia gelatinosa of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1432] xref: BIRNLEX:1432 xref: SCTID:367878004 xref: UMLS:C0228630 {source="BIRNLEX:1432"} xref: UMLS:C1288554 {source="BIRNLEX:1432"} is_a: UBERON:0002181 ! substantia gelatinosa relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014613 name: cervical spinal cord gray matter namespace: uberon def: "A gray matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1521] xref: BIRNLEX:1521 xref: SCTID:362438009 xref: UMLS:C0228610 {source="BIRNLEX:1521"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014614 name: cervical spinal cord white matter namespace: uberon def: "A white matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1531] xref: BIRNLEX:1531 xref: SCTID:174829001 xref: UMLS:C0228616 {source="BIRNLEX:1531"} is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014615 name: accessory nerve root namespace: uberon def: "A nerve root that is part of a accessory XI nerve." [OBOL:automatic] synonym: "accessory nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:1580] synonym: "accessory portion of spinal accessory nerve" RELATED [NeuroNames:703] synonym: "bulbar accessory nerve" RELATED [NeuroNames:703] synonym: "bulbar part of accessory nerve" RELATED [NeuroNames:703] synonym: "c11n" BROAD OMO:0003000 [BIRNLEX:1580, NIFSTD:NeuroNames_abbrevSource] synonym: "cranial accessory nerve" RELATED [NeuroNames:703] synonym: "cranial part of accessory nerve" RELATED [BAMS:c11n] synonym: "cranial part of the accessory nerve" RELATED [NeuroNames:703] synonym: "cranial portion of eleventh cranial nerve" RELATED [NeuroNames:703] synonym: "internal branch of accessory nerve" RELATED [NeuroNames:703] synonym: "nerve XI (cranialis)" RELATED [NeuroNames:703] synonym: "pars vagalis of nervus accessorius" RELATED OMO:0003011 [NeuroNames:703] synonym: "radices craniales nervi accessorii" RELATED OMO:0003011 [NeuroNames:703] synonym: "root of accessory nerve" EXACT [] xref: BAMS:c11n xref: BIRNLEX:1580 xref: DHBA:12883 xref: DMBA:17749 xref: neuronames:703 {source="BIRNLEX:1580"} xref: SCTID:280187004 xref: Wikipedia:Cranial_root_of_accessory_nerves is_a: UBERON:0002211 ! nerve root [Term] id: UBERON:0014616 name: dorsal nerve root of thoracic spinal cord namespace: uberon synonym: "dorsal nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1601] synonym: "posterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1601] xref: BIRNLEX:1601 xref: SCTID:367883007 xref: UMLS:C1288559 {source="BIRNLEX:1601"} is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve [Term] id: UBERON:0014617 name: ventral nerve root of thoracic spinal cord namespace: uberon synonym: "anterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1606] synonym: "ventral nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1606] xref: BIRNLEX:1606 xref: SCTID:367882002 xref: UMLS:C0228639 {source="BIRNLEX:1606"} is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve [Term] id: UBERON:0014618 name: middle frontal sulcus namespace: uberon synonym: "intermediate frontal sulcus" RELATED [NeuroNames:62] synonym: "MFS" BROAD OMO:0003000 [BIRNLEX:1650, NIFSTD:NeuroNames_abbrevSource] synonym: "middle frontal fissure" RELATED [BIRNLEX:1650] synonym: "middle frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1650] synonym: "sulcus F3" RELATED [BIRNLEX:1650] synonym: "sulcus frontalis intermedius" RELATED OMO:0003011 [NeuroNames:62] synonym: "sulcus frontalis medius" RELATED [BIRNLEX:1650] synonym: "sulcus frontalis medius (Eberstaller)" RELATED OMO:0003011 [NeuroNames:62] xref: BAMS:mfs xref: BIRNLEX:1650 xref: DHBA:146034816 xref: HBA:9359 xref: neuronames:62 {source="BIRNLEX:1650"} xref: SCTID:369227007 xref: UMLS:C0228199 {source="BIRNLEX:1650"} is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0014619 name: cervical spinal cord lateral horn namespace: uberon def: "A spinal cord lateral horn that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord intermediate horn" RELATED [BIRNLEX:1665] synonym: "cervical spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1665] xref: BIRNLEX:1665 xref: SCTID:174268004 xref: UMLS:C0228614 {source="BIRNLEX:1665"} xref: UMLS:C1278739 {source="BIRNLEX:1665"} is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014620 name: cervical spinal cord dorsal horn namespace: uberon def: "A dorsal horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1673] synonym: "cervical spinal cord posterior horn" RELATED [BIRNLEX:1673] xref: BIRNLEX:1673 xref: SCTID:362439001 xref: UMLS:C0228611 {source="BIRNLEX:1673"} is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014621 name: cervical spinal cord ventral horn namespace: uberon def: "A ventral horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "cervical spinal cord anterior horn" RELATED [BIRNLEX:1680] synonym: "cervical spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1680] xref: BIRNLEX:1680 xref: MESH:D066151 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:174363005 xref: UMLS:C0228615 {source="BIRNLEX:1680"} xref: UMLS:C1278740 {source="BIRNLEX:1680"} is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014622 name: apex of cervical spinal cord dorsal horn namespace: uberon subset: human_reference_atlas synonym: "apex of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1714] synonym: "apex of cervical spinal cord posterior horn" RELATED [BIRNLEX:1714] xref: BIRNLEX:1714 xref: SCTID:174452008 xref: UMLS:C0228612 {source="BIRNLEX:1714"} relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014623 name: substantia gelatinosa of cervical spinal cord dorsal horn namespace: uberon def: "A substantia gelatinosa that is part of a cervical spinal cord dorsal horn." [OBOL:automatic] subset: human_reference_atlas synonym: "substantia gelatinosa of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1723] synonym: "substantia gelatinosa of cervical spinal cord posterior horn" RELATED [BIRNLEX:1723] xref: BIRNLEX:1723 xref: SCTID:174544008 xref: UMLS:C0228613 {source="BIRNLEX:1723"} is_a: UBERON:0002181 ! substantia gelatinosa relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014630 name: ventral gray commissure of spinal cord namespace: uberon synonym: "anterior grey commissure of spinal cord" EXACT [FMA:77038] synonym: "commissura grisea anterior medullae spinalis" EXACT [FMA:TA] synonym: "spinal cord anterior gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2676] synonym: "ventral grey commissure of spinal cord" EXACT [FMA:77038] xref: BIRNLEX:2676 xref: FMA:77038 xref: SCTID:88806005 xref: UMLS:C0228572 {source="BIRNLEX:2676"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissure [Term] id: UBERON:0014631 name: dorsal gray commissure of spinal cord namespace: uberon def: "The part of the gray commissure in the spinal central gray posterior to the central canal of the spinal cord." [NeuroNames:2017] synonym: "commissura grisea posterior medullae spinalis" EXACT [FMA:TA] synonym: "dorsal gray commissure" EXACT [NeuroNames:2017] synonym: "dorsal grey commissure of spinal cord" EXACT [FMA:77037] synonym: "posterior grey commissure of spinal cord" EXACT [FMA:77037] synonym: "spinal cord posterior gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2677] xref: BIRNLEX:2677 xref: FMA:77037 xref: neuronames:2017 xref: SCTID:21169000 xref: UMLS:C0228573 {source="BIRNLEX:2677"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissure property_value: UBPROP:0000008 "It is identified by Nissl stain and found in the human ( Crosby-1962 ) and the rat ( Swanson-2004 )." xsd:string [Term] id: UBERON:0014632 name: apex of lumbar spinal cord dorsal horn namespace: uberon subset: human_reference_atlas synonym: "apex of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:811] synonym: "apex of lumbar spinal cord posterior horn" RELATED [BIRNLEX:811] xref: BIRNLEX:811 xref: SCTID:314425003 xref: UMLS:C0228647 {source="BIRNLEX:811"} relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014633 name: substantia gelatinosa of lumbar spinal cord dorsal horn namespace: uberon def: "A substantia gelatinosa that is part of a lumbar spinal cord dorsal horn." [OBOL:automatic] subset: human_reference_atlas synonym: "substantia gelatinosa of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:819] synonym: "substantia gelatinosa of lumbar spinal cord posterior horn" RELATED [BIRNLEX:819] xref: BIRNLEX:819 xref: SCTID:314519000 xref: UMLS:C0228648 {source="BIRNLEX:819"} xref: UMLS:C1282211 {source="BIRNLEX:819"} is_a: UBERON:0002181 ! substantia gelatinosa relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014634 name: ventral nerve root of cervical spinal cord namespace: uberon def: "A ventral root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] synonym: "anterior nerve root of cervical spinal cord" RELATED [BIRNLEX:958] synonym: "ventral nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:958] xref: BIRNLEX:958 xref: SCTID:174925008 xref: UMLS:C1278750 {source="BIRNLEX:958"} is_a: UBERON:0002260 ! ventral root of spinal cord is_a: UBERON:0009632 {source="NIFSTD"} ! root of cervical nerve [Term] id: UBERON:0014635 name: dorsal nerve root of cervical spinal cord namespace: uberon def: "A dorsal root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] synonym: "dorsal nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:964] synonym: "posterior nerve root of cervical spinal cord" RELATED [BIRNLEX:964] xref: BIRNLEX:964 xref: SCTID:175023008 xref: UMLS:C1278751 {source="BIRNLEX:964"} is_a: UBERON:0002261 ! dorsal root of spinal cord is_a: UBERON:0009632 {source="NIFSTD"} ! root of cervical nerve [Term] id: UBERON:0014636 name: thoracic spinal cord gray matter namespace: uberon def: "A gray matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:980] xref: BIRNLEX:980 xref: SCTID:362441000 xref: UMLS:C0228627 {source="BIRNLEX:980"} is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014637 name: thoracic spinal cord white matter namespace: uberon def: "A white matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "thoracic spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:999] xref: BIRNLEX:999 xref: SCTID:367881009 xref: UMLS:C0228633 {source="BIRNLEX:999"} xref: UMLS:C1288557 {source="BIRNLEX:999"} is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0003038 ! thoracic spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014638 name: lumbar spinal cord dorsal horn namespace: uberon def: "A dorsal horn of spinal cord that is part of a lumbar spinal cord." [OBOL:automatic] subset: human_reference_atlas synonym: "lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:884] synonym: "lumbar spinal cord posterior horn" RELATED [BIRNLEX:884] xref: BIRNLEX:884 xref: UMLS:C1282146 {source="BIRNLEX:884"} is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0002792 ! lumbar spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014639 name: frontal sulcus namespace: uberon def: "A sulcus of brain that is part of a frontal cortex." [OBOL:automatic] synonym: "frontal lobe sulci" EXACT OMO:0003004 [HBA:FLs] synonym: "frontal lobe sulcus" EXACT [] xref: HBA:9354 xref: NCIT:C32639 xref: UMLS:C0459388 {source="ncithesaurus:Frontal_Sulcus"} is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0014640 name: occipital gyrus namespace: uberon def: "A gyrus that is part of a occipital lobe." [OBOL:automatic] synonym: "gyrus occipitalis" RELATED OMO:0003011 [NeuroNames:152] xref: BAMS:OG xref: BIRNLEX:747 xref: neuronames:152 {source="BIRNLEX:747"} xref: UMLS:C1110642 {source="BIRNLEX:747"} is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0014641 name: terminal nerve root namespace: uberon def: "A nerve root that extends_fibers_into a terminal nerve." [OBOL:automatic] synonym: "cranial nerve 0 root" EXACT [Wikipedia:Terminal_nerve] synonym: "root of terminal nerve" EXACT [] synonym: "terminal nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:4045] xref: BIRNLEX:4045 is_a: UBERON:0002211 ! nerve root [Term] id: UBERON:0014642 name: vestibulocerebellum namespace: uberon def: "A phylogenetic subdivision of the cerebellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait." [Wikipedia:Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] synonym: "archaeocerebellum" RELATED [BIRNLEX:904] synonym: "archeocerebellum" RELATED [BIRNLEX:904] synonym: "archicerebellum" EXACT [] synonym: "archicerebellum" RELATED [BIRNLEX:904] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0014643 name: spinocerebellum namespace: uberon def: "A phylogenetic subdivision of the cerebellum, the intermediate part, which regulates body and limb movements. It receives proprioception input from the dorsal columns of the spinal cord (including the spinocerebellar tract) and the trigeminal nerve, as well as from visual and auditory systems. It sends fibres to deep cerebellar nuclei which in turn project to both the cerebral cortex and the brain stem, thus providing modulation of descending motor systems." [Wikipedia:Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] synonym: "paleocerebellum" EXACT [] xref: Wikipedia:Cerebellum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: IAO:0000116 "consider merging into UBERON:0004006 ! cerebellum intermediate zone" xsd:string [Term] id: UBERON:0014644 name: cerebrocerebellum namespace: uberon alt_id: UBERON:0004005 def: "The part of the cerebellar cortex that receives input from the cerebral cortex via axons from the pontine relay nuclei." [https://www.ncbi.nlm.nih.gov/books/NBK11100/] subset: human_reference_atlas subset: pheno_slim synonym: "cerebellum lateral hemisphere" EXACT [MP:0009965] synonym: "cerebellum lateral zone" EXACT [MP:0009965] synonym: "cerebrocerebellum" RELATED INCONSISTENT [MP:0009965] synonym: "neocerebellum" EXACT [] synonym: "pontocerebellum" EXACT [] xref: DHBA:12390 xref: neuronames:2128 xref: Wikipedia:Cerebellum is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000001 "the most lateral paired regions of the cerebellum; the lateral zone receives input from the parietal cortex via pontocerebellar mossy fibers regarding the location and position of the body and integrates input signals with indications of muscle activit[MP:0009965]y" xsd:string {source="MP:0009965"} [Term] id: UBERON:0014645 name: nucleus H of ventral tegmentum namespace: uberon def: "A nucleus present in the ventral tegmentum of squalomorph sharks." [ISBN:0471888893] synonym: "nucleus H" BROAD [] is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 ! ventral tegmental area [Term] id: UBERON:0014646 name: nucleus K of ventral tegmentum namespace: uberon def: "A nucleus present in the ventral tegmentum of skates." [ISBN:0471888893] synonym: "nucleus K" BROAD [] is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002691 ! ventral tegmental area [Term] id: UBERON:0014647 name: hemisphere part of cerebellar anterior lobe namespace: uberon def: "A multi-tissue structure that is part of a anterior lobe of cerebellum and is part of a cerebellar hemisphere." [OBOL:automatic] synonym: "hemisphere of anterior lobe" EXACT [FMA:72254] synonym: "hemisphere of anterior lobe of cerebellum" EXACT [FMA:72254] synonym: "hemispherium lobus anterior" EXACT OMO:0003011 [FMA:72254, FMA:TA] xref: BAMS:HAL xref: BIRNLEX:1339 xref: FMA:72254 xref: HBA:12931 xref: neuronames:653 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum relationship: part_of UBERON:0002245 ! cerebellar hemisphere [Term] id: UBERON:0014648 name: hemisphere part of cerebellar posterior lobe namespace: uberon def: "A multi-tissue structure that is part of a cerebellar hemisphere and is part of a posterior lobe of cerebellum." [OBOL:automatic] synonym: "hemisphere of posterior lobe" EXACT [FMA:72256] synonym: "hemisphere of posterior lobe of cerebellum" EXACT [FMA:72256] synonym: "hemispherium lobus posterior" EXACT OMO:0003011 [FMA:72256, FMA:TA] xref: BAMS:HPL xref: FMA:72256 xref: HBA:12936 xref: neuronames:664 xref: NLXANAT:20081261 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum [Term] id: UBERON:0014649 name: white matter of medulla oblongata namespace: uberon def: "A white matter that is part of a medulla oblongata." [OBOL:automatic] synonym: "medullary white matter" RELATED [BAMS:mw] synonym: "substantia alba medullae oblongatae" EXACT [FMA:TA] synonym: "white matter of medulla" EXACT [FMA:83944] synonym: "white substance of medulla" EXACT [FMA:83944] xref: BAMS:mw xref: BIRNLEX:1024 xref: BIRNLEX:1414 xref: FMA:83944 xref: neuronames:778 is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0019262 ! white matter of myelencephalon relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0014650 name: dorsal hypothalamic nucleus namespace: uberon def: "A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region." [BTO:0002451, Dorlands_Medical_Dictionary:MerckSource] synonym: "dorsal nucleus of hypothalamus" EXACT [FMA:77685] synonym: "nucleus dorsalis hypothalami" RELATED [BTO:0002451] xref: BAMS:DHy xref: BAMS:Do xref: BAMS:OH xref: BTO:0002451 xref: FMA:77685 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014663 name: nucleus recessus lateralis namespace: uberon xref: BTO:0003662 is_a: UBERON:0036177 ! nucleus recessus [Term] id: UBERON:0014664 name: nucleus recessus posterioris namespace: uberon xref: BTO:0003663 is_a: UBERON:0036177 ! nucleus recessus [Term] id: UBERON:0014665 name: nucleus preopticus namespace: uberon def: "The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals." [BTO:0003664] synonym: "nucleus praeopticus" RELATED [BTO:0003664] xref: BTO:0003664 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014666 name: nucleus recessus preopticus namespace: uberon xref: BTO:0003665 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014667 name: periventricular nucleus of hypothalamus namespace: uberon def: "A small nucleus at the base of the hypothalamus, adjacent to the arcuate nucleus." [BTO:0003795] synonym: "periventricular hypothalamic nucleus" RELATED [BTO:0003795] synonym: "periventricular nucleus of the hypothalamus" RELATED [BAMS:PE] xref: BAMS:PE xref: BAMS:Pe xref: BTO:0003795 xref: neuronames:1593 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014687 name: temporal sulcus namespace: uberon def: "Any of three grooves in the temporal lobe including the inferior, middle, and superior temporal sulci." [ncithesaurus:Temporal_Sulcus] synonym: "temporal lobe sulci" EXACT OMO:0003004 [HBA:TLs] synonym: "temporal lobe sulcus" EXACT [] xref: HBA:9377 xref: NCIT:C33744 xref: UMLS:C0459389 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0014689 name: middle temporal sulcus namespace: uberon def: "A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus." [ncithesaurus:Middle_Temporal_Sulcus] synonym: "middle (medial) temporal sulcus" RELATED [BAMS:mts] xref: BAMS:mts xref: HBA:10150 xref: NCIT:C33127 xref: neuronames:131 xref: SCTID:279345006 xref: UMLS:C0228241 is_a: UBERON:0014687 ! temporal sulcus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0014733 name: dorsal ventricular ridge of pallium namespace: uberon def: "A large expansion of the lateral wall of the telencephalon, located in the pallium. Found in reptiles and birds." [http://icb.oxfordjournals.org/content/42/4/743.full, PMID:23027930] synonym: "dorsal ventricular ridge" EXACT [] synonym: "DVR" RELATED OMO:0003000 [PMID:23027930] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: RO:0002161 NCBITaxon:40674 property_value: RO:0002175 NCBITaxon:8782 property_value: UBPROP:0000008 "Because of the phyletic continuity of the DVR in living reptiles and birds, and its numerous similarities in topography, histology, and connections in these two groups, there is little question that the DVR of reptiles and birds is homologous as a telencephalic neural center. In contrast, the telencephalon in living mammals does not appear to have a DVR. It has been suggested, however, that their predecessors did have such a ridge, and that its cells migrated to the surface of the telencephalon during development to form part of the cerebral cortices which characterize all living mammals (Karten, 1969, 1991)[http://icb.oxfordjournals.org/content/42/4/743.full]" xsd:string [Term] id: UBERON:0014734 name: allocortex namespace: uberon def: "One of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] synonym: "intercalated nucleus of the medulla" RELATED [NeuroNames:759] synonym: "nucleus intercalatus (staderini)" RELATED OMO:0003011 [NeuroNames:759] synonym: "transitional cortex" RELATED [ISBN:0471888893] xref: BAMS:All xref: DHBA:10292 xref: FMA:83687 xref: neuronames:759 xref: NLX:143557 xref: Wikipedia:Allocortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex property_value: RO:0002171 UBERON:0001950 [Term] id: UBERON:0014735 name: paleocortex namespace: uberon def: "Part of the allocortex defined on the basis of cytoarchitecture. The other two are archicortex and periallocortex. It consists of very thin, primitive cortex with few clearly defined layers. It is distinguished ontogenetically by the fact that it does not develop through a cortical plate. It includes the olfactory bulb, accessory olfactory bulb, olfactory tubercle, septum, prepyriform area and periamygdalar area ( Stephan-1975 ). (adapted from Brain Info)." [NLX:143559] synonym: "palaeocortex" EXACT OMO:0003011 [FMA:62430, FMA:TA] synonym: "paleocortex" RELATED [NeuroNames:2336] synonym: "paleocortex (semicortex)" EXACT [DHBA:10306] synonym: "paleocortex (Zilles)" RELATED [NeuroNames:2336] xref: BAMS:Paleocortex xref: DHBA:10306 xref: FMA:62430 xref: neuronames:2336 xref: NLX:143559 xref: Wikipedia:Paleocortex is_a: UBERON:0014734 {source="FMA"} ! allocortex relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex property_value: UBPROP:0000015 "Paleocortex is present in the parahippocampal gyrus,[1] olfactory bulb, accessory olfactory bulb, olfactory tubercle, piriform cortex, periamygdalar area,[2] anterior olfactory nucleus, anterior perforated substance, and prepyriform area" xsd:string {source="WP"} [Term] id: UBERON:0014736 name: periallocortex namespace: uberon def: "Agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] synonym: "periallocortex" EXACT [NeuroNames:2315] xref: DHBA:10313 xref: neuronames:2315 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014738 name: medial pallium namespace: uberon def: "Subdivision of pallium that is located is the medial position in vertebrates with an evaginated brain and in the distal position in vertebrates with an everted brain." [ISBN:0471888893] synonym: "area dorsalis telencephali, zona medialis" RELATED [] synonym: "distal pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "hippocampal pallium" RELATED [ISBN:0471888893] synonym: "lateral pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "lateral zone of dorsal telencephalon" EXACT [ZFA:0000536] synonym: "medial zone of dorsal telencephalic area" EXACT [] synonym: "medial zone of dorsal telencephalon" EXACT [] synonym: "MP" BROAD OMO:0003000 [PMID:23375746] xref: TAO:0000536 xref: ZFA:0000536 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: UBPROP:0000003 "The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved." xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0014740 name: dorsal pallium namespace: uberon def: "Subdivision of pallium that is located dorsally." [ISBN:0471888893] synonym: "area dorsalis telencephali, zona dorsalis" EXACT [] synonym: "dorsal zone of D" RELATED [] synonym: "dorsal zone of dorsal telencephalic area" EXACT [] synonym: "dorsal zone of dorsal telencephalon" EXACT [] synonym: "DP" BROAD OMO:0003000 [PMID:23375746] xref: TAO:0000506 xref: ZFA:0000506 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: UBPROP:0000003 "The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved." xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0014741 name: lateral pallium namespace: uberon def: "Subdivision of pallium that is located laterally." [ISBN:0471888893] synonym: "area dorsalis telencephali, zona lateralis" EXACT [] synonym: "lateral zone of D" EXACT [] synonym: "lateral zone of dorsal telencephalic area" EXACT [] synonym: "LP" BROAD OMO:0003000 [PMID:23375746] synonym: "medial pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "olfactory pallium" RELATED [ISBN:0471888893] synonym: "piriform pallium" RELATED [ISBN:0471888893] synonym: "proximal pallium (everted brain)" RELATED [ISBN:0471888893] xref: DMBA:15956 xref: TAO:0000391 xref: ZFA:0000391 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium property_value: UBPROP:0000003 "The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved." xsd:string {source="ISBN:0471888893"} [Term] id: UBERON:0014742 name: central nucleus of pallium namespace: uberon def: "A nucleus located in the dorsal pallium that is present in sharks, skates and rays and extends at some levels to the midline.." [ISBN:0471888893] is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0014740 ! dorsal pallium [Term] id: UBERON:0014751 name: P1 area of pallium (Myxiniformes) namespace: uberon def: "Most superficial of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014752 name: P2 area of pallium (Myxiniformes) namespace: uberon def: "Area directly deep to the P1 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014753 name: P3 area of pallium (Myxiniformes) namespace: uberon def: "Area directly deep to the P2 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014754 name: P4 area of pallium (Myxiniformes) namespace: uberon def: "Area directly deep to the P3 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014755 name: P5 area of pallium (Myxiniformes) namespace: uberon def: "Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014756 name: Wulst namespace: uberon def: "A nuclear complex in the avian telecephalon dorsal to the DVR. The Wulst has telencephalic circuitry similar to the DVR." [PMID:23027930] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014757 name: hyperpallium apicale namespace: uberon def: "Missing definition for term UBERON:0014757. Please replace it using linked reference." [PMID:23027930] synonym: "HA" RELATED OMO:0003000 [PMID:23027930] xref: BTO:0003402 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014758 name: interstitial part of hyperpallium apicale namespace: uberon def: "Missing definition for term UBERON:0014758. Please replace it using linked reference." [PMID:23027930] synonym: "IHA" RELATED OMO:0003000 [PMID:23027930] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014757 ! hyperpallium apicale [Term] id: UBERON:0014759 name: entopallium namespace: uberon def: "The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves." [PMID:16041718] synonym: "core region of ectostriatum" RELATED [PMID:14681937] synonym: "E" RELATED OMO:0003000 [PMID:16041718] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014760 name: gustatory nucleus namespace: uberon def: "The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 )." [NeuroNames:1386] synonym: "dorsal visceral gray" RELATED [NeuroNames:1386] synonym: "gustatory gray" RELATED [NeuroNames:1386] synonym: "gustatory nucleus" RELATED [NeuroNames:1386] xref: neuronames:1386 xref: Wikipedia:Gustatory_nucleus is_a: UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0014761 name: spinal trigeminal tract namespace: uberon def: "Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex." [BTO:0003701, http://www.sylvius.com/] synonym: "descending root of V" RELATED [NeuroNames:1589] synonym: "descending tract of trigeminal" RELATED [NeuroNames:1589] synonym: "spinal root of trigeminal" RELATED [NeuroNames:1589] synonym: "spinal tract of the trigeminal nerve" RELATED [NeuroNames:1589] synonym: "spinal tract of trigeminal nerve" RELATED [NeuroNames:1589] synonym: "spinal trigeminal tract" RELATED [NeuroNames:1589] synonym: "spinal V tract" RELATED [NeuroNames:1589] synonym: "tract of descending root of trigeminal" RELATED [NeuroNames:1589] synonym: "tractus spinalis nervi trigeminalis" RELATED OMO:0003011 [NeuroNames:1589] synonym: "tractus spinalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:1589] synonym: "trigeminospinal tract" RELATED [NeuroNames:1589] xref: BAMS:sp5 xref: BTO:0003701 xref: DHBA:12792 xref: DMBA:17797 xref: FMA:75700 xref: FMA:83851 xref: HBA:265505650 xref: MBA:794 xref: neuronames:1589 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002298 {source="BTO"} ! brainstem [Term] id: UBERON:0014775 name: prosomere namespace: uberon def: "A neuromere that is part of the presumptive forebrain." [http://orcid.org/0000-0002-6601-2165] synonym: "forebrain neuromere" EXACT [] synonym: "forebrain segment" BROAD [] synonym: "future prosencephalon" RELATED [] synonym: "segment of forebrain" BROAD [] xref: FMA:61996 is_a: UBERON:0004731 ! neuromere [Term] id: UBERON:0014776 name: midbrain neuromere namespace: uberon def: "A neuromere that is part of the presumptive midbrain." [http://orcid.org/0000-0002-6601-2165] synonym: "future mesencephalon" RELATED [] synonym: "mesomere" BROAD [] synonym: "mesomere group" RELATED [EHDAA2:0004352] synonym: "mesomere of nervous system" EXACT [] synonym: "midbrain segment" BROAD [] synonym: "neuromere of mesomere group" EXACT [] synonym: "segment of midbrain" BROAD [] xref: EHDAA2:0004352 xref: FMA:61997 is_a: UBERON:0004731 ! neuromere [Term] id: UBERON:0014777 name: spinal neuromere namespace: uberon def: "A neuromere that is part of the presumptive spinal cord." [http://orcid.org/0000-0002-6601-2165] synonym: "spinal cord metameric segment" EXACT [] synonym: "spinal cord segment" RELATED [TAO:0001332] synonym: "spinal neuromeres" EXACT OMO:0003004 [TAO:0001332] xref: TAO:0001332 xref: ZFA:0001332 is_a: UBERON:0004731 ! neuromere relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0014889 name: left hemisphere of cerebellum namespace: uberon def: "A cerebellar hemisphere that is in_the_left_side_of a cerebellum." [OBOL:automatic] subset: pheno_slim xref: FMA:83877 is_a: UBERON:0002245 ! cerebellar hemisphere property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014890 name: right hemisphere of cerebellum namespace: uberon def: "A cerebellar hemisphere that is in_the_right_side_of a cerebellum." [OBOL:automatic] subset: pheno_slim xref: FMA:83876 is_a: UBERON:0002245 ! cerebellar hemisphere property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0014891 name: brainstem white matter namespace: uberon def: "White matter that is part of a brainstem [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "brain stem white matter" RELATED [EMAPA:35189] synonym: "brainstem tract/commissure" RELATED [] synonym: "brainstem tracts" RELATED [] synonym: "brainstem tracts and commissures" RELATED [] xref: EMAPA:35189 xref: FMA:282112 xref: MA:0002741 xref: SCTID:360442003 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0014908 name: cerebellopontine angle namespace: uberon def: "Junction between the cerebellum and the pons." [MESH:A08.186.211.132.810.428.200.462] synonym: "angulus cerebellopontinus" RELATED OMO:0003011 [NeuroNames:544] synonym: "cerebellopontile angle" RELATED [MESH:A08.186.211.132.810.428.200.462] synonym: "cerebellopontine angle" RELATED [MESH:A08.186.211.132.810.428.200.462, NeuroNames:544] xref: FMA:84358 xref: MESH:D002530 xref: NCIT:C54057 xref: neuronames:544 xref: SCTID:369037007 xref: Wikipedia:Cerebellopontine_angle is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0014912 name: thalamic eminence namespace: uberon synonym: "eminentia thalami" EXACT OMO:0003011 [ZFA:0007010] synonym: "EMT" BROAD OMO:0003000 [PMID:23375746] xref: FMA:295507 xref: TAO:0007010 xref: XAO:0004301 xref: ZFA:0007010 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010225 ! thalamic complex property_value: UBPROP:0000001 "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development[ZFIN:curator]." xsd:string {source="ZFIN:curator"} [Term] id: UBERON:0014913 name: ventral pallium namespace: uberon def: "The pallial region located next to the pallium-subpallium boundary." [DOI:10.1371/journal.pone.0044716] synonym: "VP" BROAD OMO:0003000 [PMID:23375746] xref: DMBA:15904 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0014915 name: genu of facial nerve namespace: uberon def: "The bend in the facial nerve at the lateral end of the internal acoustic meatus." [http://medical-dictionary.thefreedictionary.com/genu+of+facial+nerve] subset: pheno_slim synonym: "first genu" BROAD [FMA:72510] synonym: "first genu" RELATED [NeuroNames:581] synonym: "genu internum n. faciales" RELATED OMO:0003011 [NeuroNames:581] synonym: "genu nervi facialis" EXACT [FMA:TA] synonym: "genu nervi facialis" RELATED OMO:0003011 [NeuroNames:581] synonym: "genu of facial nerve" RELATED [NeuroNames:581] synonym: "genu of the facial nerve" RELATED [NeuroNames:581] synonym: "internal genu" RELATED [NeuroNames:581] synonym: "internal genu of facial nerve" NARROW [FMA:72510] synonym: "internal genu of facial nerve" RELATED [NeuroNames:581] synonym: "internal genu of the facial nerve" RELATED [NeuroNames:581] synonym: "nervus facialis (genu)" RELATED OMO:0003011 [NeuroNames:581] xref: DHBA:12738 xref: EMAPA:37870 {source="MA:th"} xref: FMA:72510 xref: MBA:1116 xref: neuronames:581 is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0014918 name: retrosplenial granular cortex namespace: uberon subset: pheno_slim synonym: "retrosplenial area, ventral part" RELATED [NeuroNames:1802] synonym: "retrosplenial cortex, ventral part" RELATED [NeuroNames:1802] synonym: "retrosplenial granular area" RELATED [NeuroNames:1802] synonym: "retrosplenial granular cortex" RELATED [NeuroNames:1802] synonym: "ventral part of the retrosplenial area" RELATED [NeuroNames:1802] xref: EMAPA:37947 {source="MA:th"} xref: MBA:886 xref: neuronames:1802 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0013531 ! retrosplenial region [Term] id: UBERON:0014930 name: perivascular space namespace: uberon def: "The space between a blood vessel and the pia mater." [DOI:10.1007/s11064-015-1581-6, ncithesaurus:Perivascular_Space] comment: VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brain's arteries, as no leptomeningeal layers surround the brain's veins[WP] subset: pheno_slim synonym: "perivascular region" EXACT [] synonym: "perivascular spaces" RELATED OMO:0003004 [] synonym: "Virchow-Robin space" EXACT [Wikipedia:Virchow-Robin_space] synonym: "VRS" BROAD OMO:0003000 [Wikipedia:Virchow-Robin_space] xref: NCIT:C83196 xref: SCTID:342298001 xref: UMLS:C0225983 xref: Wikipedia:Virchow-Robin_space relationship: part_of UBERON:0010743 ! meningeal cluster property_value: http://xmlns.com/foaf/0.1/depiction "https://static-content.springer.com/image/art%3A10.1007%2Fs11064-015-1581-6/MediaObjects/11064_2015_1581_Fig3_HTML.gif" xsd:anyURI [Term] id: UBERON:0014932 name: periventricular white matter namespace: uberon xref: SCTID:37065005 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0014933 name: periventricular gray matter namespace: uberon synonym: "periventricular grey matter" EXACT [] xref: SCTID:89530008 is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0014935 name: cerebral cortex marginal layer namespace: uberon def: "Developing superficial cortical layer located just under the pia matter, develops from the marginal layer of the neural tube and becomes cortical layer I." [http://orcid.org/0000-0002-6601-2165, MP:0000792] synonym: "cerebral cortex marginal zone" RELATED [EMAPA:32713] synonym: "cortical marginal layer" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cortical marginal zone" EXACT [MP:0000792] synonym: "future cortical layer I" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "marginal zone" BROAD [PBA:294021774] synonym: "MZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN, MP:0000792] xref: EMAPA:17546 xref: EMAPA:32713 xref: PBA:294021774 is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: part_of UBERON:0010403 ! brain marginal zone property_value: UBPROP:0000011 "in humans develops into cortical layer I" xsd:string property_value: UBPROP:0000012 "EMAPA temporally divides this into zone and layer. TODO - unify this with marginal layers in EHDAA2" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0014936 name: cerebral cortex ventricular layer namespace: uberon synonym: "cerebral cortex ventricular zone" RELATED [EMAPA:32707] xref: EMAPA:17547 xref: EMAPA:32707 xref: MA:0003189 is_a: UBERON:0014950 ! layer of developing cerebral cortex [Term] id: UBERON:0014940 name: cerebral cortex subventricular zone namespace: uberon synonym: "cerebral cortex subventricular zone" RELATED [] synonym: "SZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] xref: EMAPA:32704 xref: MA:0003188 is_a: UBERON:0014950 ! layer of developing cerebral cortex [Term] id: UBERON:0014950 name: layer of developing cerebral cortex namespace: uberon relationship: part_of UBERON:0000956 {source="EMAPA"} ! cerebral cortex property_value: IAO:0000232 "these layers primarily refer to the mammalian future neocortex" xsd:string [Term] id: UBERON:0014951 name: proisocortex namespace: uberon def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] synonym: "intermediate belt" RELATED [NeuroNames:2311] synonym: "juxtallocortex" RELATED [NeuroNames:2311] synonym: "periisocortical belt" RELATED [NeuroNames:2311] synonym: "proisocortex" RELATED [NeuroNames:2311] synonym: "proisocortical belt" RELATED [NeuroNames:2311] xref: neuronames:2311 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0015117 name: lamina terminalis of cerebral hemisphere namespace: uberon def: "The remnant of the lamina terminalis in the developed brain." [http://orcid.org/0000-0002-6601-2165] comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] synonym: "lamina terminalis" BROAD [FMA:61975] xref: DHBA:12105 xref: EHDAA:3500 xref: EHDAA:4498 xref: FMA:61975 xref: SCTID:361483008 xref: Wikipedia:Lamina_terminalis is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter [Term] id: UBERON:0015161 name: inferior branch of oculomotor nerve namespace: uberon def: "The inferior branch of the oculomotor nerve or the inferior division, the larger, divides into three branches. One passes beneath the optic nerve to the medial rectus. Another, to the inferior rectus. The third and longest runs forward between the inferior recti and lateralis to the inferior oblique. From the last a short thick branch is given off to the lower part of the ciliary ganglion, and forms its short root. All these branches enter the muscles on their ocular surfaces, with the exception of the nerve to the inferior oblique, which enters the muscle at its posterior border." [Wikipedia:Inferior_branch_of_oculomotor_nerve] synonym: "inferior division of oculomotor nerve" RELATED [FMA:52573] synonym: "inferior ramus of oculomotor nerve" EXACT [FMA:52573] synonym: "oculomotor nerve inferior division" EXACT [FMA:52573] synonym: "ramus inferior (nervus oculomotorius [III])" EXACT [FMA:52573] synonym: "ramus inferior nervi oculomotorii" EXACT OMO:0003011 [Wikipedia:Inferior_branch_of_oculomotor_nerve] synonym: "ramus inferior nervus oculomotorii" EXACT OMO:0003011 [FMA:52573, FMA:TA] synonym: "ventral ramus of occulomotor nerve" RELATED [AAO:0010632] synonym: "ventral ramus of oculomotor nerve" RELATED [AAO:0010632] xref: AAO:0010632 xref: FMA:52573 xref: neuronames:2232 xref: SCTID:280206003 xref: Wikipedia:Inferior_branch_of_oculomotor_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001643 ! oculomotor nerve [Term] id: UBERON:0015162 name: superior branch of oculomotor nerve namespace: uberon def: "The superior branch of the oculomotor nerve or the superior division, the smaller, passes medialward over the optic nerve. It supplies the Superior rectus and Levator palpebrae superioris." [Wikipedia:Superior_branch_of_oculomotor_nerve] synonym: "dorsal ramus of occulomotor nerve" RELATED [AAO:0010628] synonym: "dorsal ramus of oculomotor nerve" RELATED [AAO:0010628] synonym: "oculomotor nerve superior division" EXACT [FMA:52572] synonym: "ramus superior (nervus oculomotorius [III])" EXACT [FMA:52572] synonym: "ramus superior nervi oculomotorii" EXACT OMO:0003011 [Wikipedia:Superior_branch_of_oculomotor_nerve] synonym: "ramus superior nervus oculomotorii" EXACT OMO:0003011 [FMA:52572, FMA:TA] synonym: "superior division of oculomotor nerve" RELATED [FMA:52572] synonym: "superior ramus of oculomotor nerve" EXACT [FMA:52572] xref: AAO:0010628 xref: FMA:52572 xref: SCTID:280205004 xref: Wikipedia:Superior_branch_of_oculomotor_nerve is_a: UBERON:0003437 ! eyelid nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001643 ! oculomotor nerve [Term] id: UBERON:0015189 name: perineural vascular plexus namespace: uberon def: "The capillary bed that initially surrounds the relative avascular brain and spinal cord; the perineural vascular plexus (PNVP) is the precursor to the blood brain barrier formed by angioblasts which migrate away from somites and is recruited to surround the neural tube in response to VEGF; vascularization of the brain and spinal cord occurs via angiogenesis as sprouting vessels from the PNVP invade the neuroepithelium and grow inward toward the ventricular lumen[MP]." [MP:0012732] synonym: "PNVP" EXACT OMO:0003000 [MGI:anna] xref: EMAPA:35678 relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0015233 name: nucleus of dorsal thalamus namespace: uberon def: "A nucleus of brain that is part of a dorsal thalamus." [OBOL:automatic] synonym: "dorsal thalamic nucleus" EXACT [] synonym: "nucleus of thalamus proper" EXACT [] is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0004703 ! dorsal thalamus property_value: RO:0002175 NCBITaxon:7762 {notes="Hagfish possess a habenular complex and separate nuclei in the dorsal thalamus", source="Butler, 1996, p. 303"} [Term] id: UBERON:0015234 name: nucleus of ventral thalamus namespace: uberon def: "A nucleus of brain that is part of a ventral thalamus." [OBOL:automatic] synonym: "ventral thalamic nucleus" EXACT [] is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001900 ! ventral thalamus [Term] id: UBERON:0015238 name: pineal complex namespace: uberon def: "A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals." [http://orcid.org/0000-0002-6601-2165] xref: TAO:0001359 xref: ZFA:0001359 relationship: part_of UBERON:0001899 {source="ZFA"} ! epithalamus property_value: RO:0002174 NCBITaxon:40674 [Term] id: UBERON:0015241 name: parapineal organ namespace: uberon synonym: "parapineal gland" RELATED [] xref: TAO:0001360 xref: ZFA:0001360 relationship: part_of UBERON:0015238 {source="ZFA"} ! pineal complex property_value: RO:0002161 NCBITaxon:40674 property_value: UBPROP:0000001 "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry[ZFA:0001360, ZFIN:ZDB-PUB-030206-1]." xsd:string {source="ZFA:0001360, ZFIN:ZDB-PUB-030206-1"} property_value: UBPROP:0000008 "In lampreys and apparently in some fossil fish, the parapineal body and the pineal body (epiphysis) are a bilateral pair of structures rather than being located in series, one in front of the other. A pair of visual structures may have been the ancestral condition of this pineal complex (Weichert, 1970, p.622). The parapineal organs of lampreys, tadpoles, and lizards possess cells similar to rods and cones. Frogs possess a brow spot or frontal organ where ancestral pineal eye might have been (Weichert, 1970, p.622)" xsd:string [Term] id: UBERON:0015244 name: accessory olfactory bulb granule cell layer namespace: uberon synonym: "accessory olfactory bulb, granular layer" EXACT [ABA:AOBgr] synonym: "AOB, granular layer" EXACT [DMBA:AGr] xref: DMBA:15961 xref: EMAPA:35109 xref: MA:0002933 xref: MBA:196 xref: neuronames:2717 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb relationship: part_of UBERON:0005378 ! olfactory bulb granule cell layer [Term] id: UBERON:0015246 name: septal organ of Masera namespace: uberon def: "A small island of olfactory neuroepithelium lying bilaterally at the ventral base of the nasal septum near the entrance of the nasopharynx." [NCBIBook:NBK55971] synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] xref: EMAPA:35766 xref: MA:0002890 relationship: part_of UBERON:0001997 ! olfactory epithelium property_value: UBPROP:0000008 "This olfactory apparatus has been observed in many mammals, including rat, mouse, hamster, deer mouse, rabbit, opossum, guinea pig, bandicoot, and koala (Rodolfo-Masera 1943; Adams and McFarland 1971; Bojsen-Moller 1975; Katz and Merzel 1977; Breipohl et al. 1983, 1989; Kratzing 1984a, 1984b; Taniguchi et al. 1993), but not in cat (Breipohl et al. 1983) or ferret (Weiler and Farbman 2003)" xsd:string {source="NCBIBook:NBK55971"} [Term] id: UBERON:0015250 name: inferior olivary commissure namespace: uberon synonym: "interolivary commissure" RELATED [MA:0003019] xref: EMAPA:37610 {source="MA:th"} xref: MA:0003019 is_a: UBERON:0034763 ! hindbrain commissure relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata relationship: part_of UBERON:0014891 {source="MA-modified"} ! brainstem white matter [Term] id: UBERON:0015432 name: accessory olfactory bulb mitral cell layer namespace: uberon synonym: "accessory olfactory bulb, mitral layer" EXACT [ABA:AOBmi] xref: EMAPA:35111 xref: MA:0002766 xref: MBA:204 xref: neuronames:2716 xref: NLXANAT:1005002 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb relationship: part_of UBERON:0004186 ! olfactory bulb mitral cell layer [Term] id: UBERON:0015488 name: sural nerve namespace: uberon def: "The sural nerve (short saphenous nerve), formed by the junction of the medial sural cutaneous with the peroneal anastomotic branch of the lateral sural cutaneous nerve, passes downward near the lateral margin of the tendo calcaneus, lying close to the small saphenous vein, to the interval between the lateral malleolus and the calcaneus. It runs forward below the lateral malleolus, and is continued as the lateral dorsal cutaneous nerve along the lateral side of the foot and little toe (via a dorsal digital nerve), communicating on the dorsum of the foot with the intermediate dorsal cutaneous nerve, a branch of the superficial peroneal. In the leg, its branches communicate with those of the posterior femoral cutaneous." [Wikipedia:Sural_nerve] synonym: "nerve, sural" RELATED [] synonym: "short saphenal nerve" RELATED [] xref: EMAPA:37757 {source="MA:th"} xref: FMA:44688 xref: MA:0003111 xref: MESH:D013497 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C77675 xref: SCTID:181073006 xref: Wikipedia:Sural_nerve is_a: UBERON:0003431 ! leg nerve relationship: part_of UBERON:0001323 ! tibial nerve property_value: UBPROP:0000007 "sural" xsd:string [Term] id: UBERON:0015510 name: body of corpus callosum namespace: uberon def: "An area within the corpus callosum, a white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain, between the genu (anterior region) and the splenium (posterior region)." [ncithesaurus:Body_of_the_Corpus_Callosum] synonym: "body of corpus callosum" RELATED [NeuroNames:195] synonym: "body of the corpus callosum" RELATED [NeuroNames:195] synonym: "corpus callosum body" EXACT [FMA:61947] synonym: "corpus callosum truncus" RELATED OMO:0003011 [NeuroNames:195] synonym: "corpus callosum, body" RELATED [NeuroNames:195] synonym: "corpus callosum, corpus" RELATED OMO:0003011 [NeuroNames:195] synonym: "trunculus corporis callosi" RELATED OMO:0003011 [NeuroNames:195] synonym: "truncus corporis callosi" EXACT OMO:0003011 [FMA:61947, FMA:TA] synonym: "truncus corpus callosi" RELATED OMO:0003011 [NeuroNames:195] synonym: "trunk of corpus callosum" RELATED [NeuroNames:195] xref: DHBA:10564 xref: FMA:61947 xref: HBA:9224 xref: NCIT:C32216 xref: neuronames:195 xref: NeuroNamesCNID:177 xref: SCTID:279307005 xref: UMLS:C0152320 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015593 name: frontal gyrus namespace: uberon def: "A gyrus that is part of a frontal cortex." [OBOL:automatic] xref: NCIT:C32636 xref: UMLS:C0228195 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0015599 name: genu of corpus callosum namespace: uberon def: "Part of corpus callosum comprising the 'kneelike' anterior bend (adapted from Nolte, The Human Brain, 6th ed., 2009 pg 664)." [NLX:144462] synonym: "corpus callosum genu" EXACT [FMA:61946] synonym: "corpus callosum, genu" RELATED OMO:0003011 [NeuroNames:194] synonym: "genu" RELATED [NeuroNames:194] synonym: "genu corporis callosi" RELATED OMO:0003011 [NeuroNames:194] synonym: "genu corpus callosi" RELATED OMO:0003011 [NeuroNames:194] synonym: "genu of corpus callosum" RELATED [NeuroNames:194] synonym: "genu of the corpus callosum" RELATED [NeuroNames:194] synonym: "rostrum of corpus callosum (Mai)" RELATED [NeuroNames:194] xref: DHBA:10563 xref: FMA:61946 xref: HBA:9223 xref: MBA:1108 xref: NCIT:C32675 xref: neuronames:194 xref: NeuroNamesCNID:176 xref: NLX:144462 xref: SCTID:279310003 xref: UMLS:C0152321 xref: Wikipedia:Genu_of_the_corpus_callosum is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015703 name: rostrum of corpus callosum namespace: uberon def: "The part of the corpus callosum that projects posteriorly and inferiorly from the anteriormost genu." [Wikipedia:Corpus_callosum] synonym: "corpus callosum rostrum" RELATED OMO:0003011 [NeuroNames:193] synonym: "corpus callosum, rostrum" RELATED [NeuroNames:193] synonym: "rostrum" RELATED [NeuroNames:193] synonym: "rostrum corporis callosi" RELATED OMO:0003011 [NeuroNames:193] synonym: "rostrum corpus callosi" RELATED OMO:0003011 [NeuroNames:193] synonym: "rostrum of corpus callosum" RELATED [NeuroNames:193] synonym: "rostrum of the corpus callosum" RELATED [NeuroNames:193, Wikipedia:Rostrum_of_corpus_callosum] xref: DHBA:10562 xref: FMA:61945 xref: HBA:9226 xref: MBA:979 xref: NCIT:C33496 xref: neuronames:193 xref: NeuroNamesCNID:175 xref: SCTID:279311004 xref: UMLS:C0152322 xref: Wikipedia:Rostrum_of_corpus_callosum is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015704 name: sagittal sinus namespace: uberon def: "Either the inferior or superior sagittal sinus." [Wikipedia:Sagittal_sinus] xref: NCIT:C12513 xref: SCTID:244400002 xref: UMLS:C0447120 xref: Wikipedia:Sagittal_sinus is_a: UBERON:0017640 {source="FMA-abduced"} ! unpaired venous dural sinus [Term] id: UBERON:0015708 name: splenium of the corpus callosum namespace: uberon def: "The posterior end of the corpus callosum. It overlaps the tela chorioidea of the third ventricle and the mid-brain, and ends in a thick, convex, free border." [Wikipedia:Splenium] synonym: "corpus callosum splenium" EXACT [FMA:61948] synonym: "corpus callosum splenium" RELATED OMO:0003011 [NeuroNames:196] synonym: "corpus callosum, splenium" EXACT [FMA:61948] synonym: "corpus callosum, splenium" RELATED OMO:0003011 [NeuroNames:196] synonym: "corpus callosum, splenium (Burdach)" RELATED [NeuroNames:196] synonym: "splenium" BROAD [NeuroNames:196] synonym: "splenium corporis callosi" RELATED OMO:0003011 [NeuroNames:196] synonym: "splenium corpus callosi" RELATED OMO:0003011 [NeuroNames:196] synonym: "splenium of corpus callosum" RELATED [NeuroNames:196] synonym: "splenium of the corpus callosum" RELATED [NeuroNames:196] xref: DHBA:10565 xref: FMA:61948 xref: HBA:9225 xref: MBA:986 xref: NCIT:C33610 xref: neuronames:196 xref: NeuroNamesCNID:178 xref: SCTID:362355007 xref: UMLS:C0152319 xref: Wikipedia:Splenium is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 ! corpus callosum [Term] id: UBERON:0015793 name: induseum griseum namespace: uberon def: "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)." [NLX:49940] synonym: "gray stria of Lancisi" RELATED [NeuroNames:173] synonym: "gyrus epicallosus" RELATED [Wikipedia:Indusium_griseum] synonym: "gyrus indusium griseum" RELATED [Wikipedia:Indusium_griseum] synonym: "indusium griseum" EXACT [HBA:265504424] synonym: "supracallosal gyrus" RELATED [Wikipedia:Indusium_griseum] xref: DHBA:10304 xref: DMBA:16147 xref: EMAPA:35430 xref: FMA:62488 xref: HBA:265504424 xref: MA:0003129 xref: MBA:19 xref: neuronames:173 xref: NLX:49940 xref: Wikipedia:Indusium_griseum is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 ! stria of telencephalon relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus [Term] id: UBERON:0015800 name: taenia tectum of brain namespace: uberon def: "A continuation ventrally of the supracallosal gyrus beyond the rostrum of the corpus callosum. It is demonstrated histologically by Nissl stain. In the human ( Anthoney-1994 ) and the macaque ( Paxinos-2004 ) it lies on the rostral surface of the lamina terminalis and is considered identical to or part of the paraterminal gyrus. In the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ) it is located similarly in relation to the supracallosal gyrus, however, it is a more prominent layered structure that extends rostrally on the medial surface overlying the anterior olfactory nucleus. It is considered part of the olfactory areas (rodent) of the cerebral cortex. In rodents it consists of two parts, the dorsal tenia tecta and the ventral tenia tecta. Note that some authors use the term 'tenia tecta' or 'taenia tecta' as a synonym for the lateral longitudinal stria ( Riley-1943 )." [neuronames:1870] synonym: "taenia tecta" EXACT [MA:0003150] synonym: "taenia tecta" RELATED OMO:0003011 [NeuroNames:1870] synonym: "taenia tectum" EXACT [DHBA:10305] synonym: "tenia tecta" RELATED [NeuroNames:1870] synonym: "tenia tectum" RELATED [NeuroNames:1870] xref: BTO:0003738 xref: DHBA:10305 xref: DMBA:16154 xref: EMAPA:35847 xref: MA:0003150 xref: MBA:589 xref: neuronames:1870 xref: NLX:144479 is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 ! stria of telencephalon relationship: part_of UBERON:0002264 ! olfactory bulb relationship: part_of UBERON:0002665 ! supracallosal gyrus [Term] id: UBERON:0015828 name: cerebellum ventricular layer namespace: uberon xref: EHDAA2:0001153 xref: EMAPA:17790 xref: MA:0003187 is_a: UBERON:0004130 {source="MA"} ! cerebellar layer relationship: part_of UBERON:0005281 ! ventricular system of central nervous system property_value: IAO:0000116 "TODO - disambiguate between developing and adult structure" xsd:string [Term] id: UBERON:0015829 name: forebrain ventricular layer namespace: uberon xref: EMAPA:32921 xref: MA:0003190 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0001890 ! forebrain relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: UBERON:0016430 name: palmar branch of median nerve namespace: uberon def: "The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence." [http://medical-dictionary.thefreedictionary.com/palmar+branch+of+median+nerve, Wikipedia:Palmar_branch_of_the_median_nerve] subset: pheno_slim synonym: "median nerve palmar branch" EXACT [FMA:44836] synonym: "palmar branch of anterior interosseous nerve" EXACT [FMA:44836] synonym: "palmar cutaneous branch of median nerve" EXACT [FMA:44836] synonym: "ramus palmaris (nervus medianus)" EXACT OMO:0003011 [FMA:44836] synonym: "ramus palmaris nervus interossei antebrachii anterior" EXACT OMO:0003011 [FMA:44836, FMA:TA] xref: FMA:44836 xref: Wikipedia:Palmar_branch_of_the_median_nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001148 ! median nerve property_value: UBPROP:0000010 "does not pass through the carpal tunnel" xsd:string [Term] id: UBERON:0016508 name: pelvic ganglion namespace: uberon subset: human_reference_atlas synonym: "inferior hypogastric ganglion" EXACT [FMA:80131] synonym: "pelvic ganglia" RELATED OMO:0003004 [] xref: EMAPA:31527 xref: FMA:80131 xref: SCTID:324760006 is_a: UBERON:0003964 {source="FMA"} ! prevertebral ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0016525 name: frontal lobe namespace: uberon def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [FMA:61824] subset: efo_slim subset: human_reference_atlas synonym: "frontal cortex" NARROW [FMA:61824] synonym: "frontal region" BROAD [FMA:61824] synonym: "lobi frontales" EXACT OMO:0003011 [NeuroNames:56] synonym: "lobus frontalis" EXACT OMO:0003011 [Wikipedia:Frontal_lobe] synonym: "regio frontalis" BROAD OMO:0003011 [FMA:61824, FMA:TA] xref: BAMS:Frontal_lobe xref: BIRNLEX:928 xref: BM:Tel-Cx-FR xref: CALOHA:TS-0389 xref: DHBA:12113 xref: EFO:0000913 xref: EV:0100167 xref: FMA:61824 xref: HBA:4009 xref: MAT:0000505 xref: MESH:D005625 xref: NCIT:C12352 xref: neuronames:56 {source="BIRNLEX:928"} xref: SCTID:180920004 xref: UMLS:C0016733 {source="BIRNLEX:928", source="ncithesaurus:Frontal_Lobe"} xref: UMLS:C1268977 {source="BIRNLEX:928"} is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere property_value: IAO:0000116 "Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though" xsd:string {source="MM"} property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0016526 name: lobe of cerebral hemisphere namespace: uberon alt_id: UBERON:0000322 def: "Subdivision of telencephalon which is one of a number of subdivisions of each hemisphere separated by both real landmarks (sulci and fissures) and arbitrary boundaries[FMA,modified]." [FMA:61823] comment: We use the term lobe broadly as a rough regional area, encompassing homologous regions in smooth-brained mammals. We subdivide the lobes into white matter and neocortical parts. synonym: "cerebral cortical segment" RELATED [FMA:68603] synonym: "cerebral hemisphere lobe" EXACT [FMA:61823] synonym: "cerebral lobe" EXACT [BTO:0000445] synonym: "lobe of cerebral cortex" EXACT [BIRNLEX:922] synonym: "lobe parts of cerebral cortex" EXACT [BIRNLEX:922] synonym: "lobes of the brain" RELATED [BIRNLEX:922] synonym: "lobi cerebri" EXACT OMO:0003011 [FMA:77800, FMA:TA] synonym: "regional organ part of cerebral cortex" RELATED [FMA:68603] synonym: "segment of cerebral cortex" RELATED [BIRNLEX:922] xref: BIRNLEX:922 xref: BTO:0000445 xref: FMA:61823 xref: neuronames:1210 xref: SCTID:272632001 relationship: part_of UBERON:0001869 ! cerebral hemisphere property_value: UBPROP:0000202 FMA:77800 [Term] id: UBERON:0016527 name: white matter of cerebral lobe namespace: uberon xref: FMA:256176 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere [Term] id: UBERON:0016528 name: white matter of frontal lobe namespace: uberon def: "A white matter of cerebral lobe that is part of a frontal lobe." [OBOL:automatic] synonym: "frontal lobe white matter" EXACT [] xref: FMA:256178 xref: SCTID:362331002 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0016529 name: cortex of cerebral lobe namespace: uberon def: "Grey matter neocortex region of a lobe of the cerebral hemisphere." [http://orcid.org/0000-0002-6601-2165] synonym: "cortex of cerebral hemisphere lobe" EXACT [FMA:242197] synonym: "cortex of lobe of cerebral hemisphere" EXACT [FMA:242197] synonym: "gray matter of lobe of cerebral hemisphere" RELATED [FMA:242197] synonym: "neocortical part of cerebral hemisphere" RELATED [] xref: FMA:242197 is_a: UBERON:0005401 ! cerebral hemisphere gray matter relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere [Term] id: UBERON:0016530 name: parietal cortex namespace: uberon def: "Gray matter of the parietal region of the neocortex, located in the parietal lobe of gyrencephalic animals. It is continuous anteriorly with the frontal cortex, posteriorly with the occipital cortex and medially with the insular cortex and with the temporal cortex on the posterior/inferior border." [NLX:79282] subset: pheno_slim synonym: "cortex of parietal lobe" EXACT [FMA:242203] synonym: "gray matter of parietal lobe" RELATED [FMA:242203] synonym: "parietal lobe cortex" EXACT [FMA:242203] synonym: "parietal neocortex" EXACT [DHBA:10208] xref: DHBA:10208 xref: DMBA:16016 xref: EMAPA:35667 xref: FMA:242203 xref: MA:0000916 xref: MESH:D010296 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2473 xref: NLX:79282 xref: SCTID:369217001 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0016531 name: white matter of parietal lobe namespace: uberon def: "A white matter of cerebral lobe that is part of a parietal lobe." [OBOL:automatic] xref: FMA:256184 xref: SCTID:369200008 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0016534 name: white matter of temporal lobe namespace: uberon def: "A white matter of cerebral lobe that is part of a temporal lobe." [OBOL:automatic] xref: FMA:256186 xref: SCTID:362344007 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0016535 name: white matter of occipital lobe namespace: uberon def: "A white matter of cerebral lobe that is part of a occipital lobe." [OBOL:automatic] xref: FMA:256188 xref: neuronames:832 xref: SCTID:362339000 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0016536 name: white matter of limbic lobe namespace: uberon def: "A white matter of cerebral lobe that is part of a limbic lobe." [OBOL:automatic] xref: FMA:261091 is_a: UBERON:0016527 ! white matter of cerebral lobe relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0016538 name: temporal cortex namespace: uberon def: "Gray matter of the temporal region of the neocortex, located in the temporal lobe in gyrencephalic animals." [NLX:94939] synonym: "cortex of temporal lobe" EXACT [FMA:242201] synonym: "gray matter of temporal lobe" RELATED [FMA:242201] synonym: "temporal lobe cortex" EXACT [FMA:242201] synonym: "temporal neocortex" EXACT [DHBA:10235] xref: BM:Tel-Cx-Te xref: DHBA:10235 xref: DMBA:16044 xref: FMA:242201 xref: MA:0000941 xref: MESH:D013702 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLX:94939 xref: SCTID:362343001 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0016540 name: occipital cortex namespace: uberon synonym: "cortex of occipital lobe" EXACT [FMA:242205] synonym: "gray matter of occipital lobe" RELATED [FMA:242205] synonym: "occipital lobe cortex" EXACT [FMA:242205] synonym: "occipital neocortex" EXACT [DHBA:10268] xref: DHBA:10268 xref: DMBA:16030 xref: EMAPA:35604 xref: FMA:242205 xref: MA:0000913 xref: PBA:4004 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0016542 name: limbic cortex namespace: uberon synonym: "cortex of limbic lobe" EXACT [FMA:242234] synonym: "gray matter of limbic lobe" RELATED [FMA:242234] synonym: "limbic lobe cortex" EXACT [FMA:242234] xref: FMA:242234 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0016548 name: central nervous system gray matter layer namespace: uberon def: "A layer of of the central nervous system that is part of gray matter." [http://orcid.org/0000-0002-6601-2165] synonym: "CNS gray matter layer" EXACT [] synonym: "CNS grey matter layer" EXACT [] synonym: "gray matter layer of neuraxis" EXACT [FMA:83142] synonym: "grey matter layer" BROAD [] synonym: "grey matter layer of neuraxis" EXACT [] xref: FMA:83142 is_a: UBERON:0022303 ! nervous system cell part layer [Term] id: UBERON:0016549 name: central nervous system white matter layer namespace: uberon def: "A layer of of the central nervous system that is composed of white matter." [http://orcid.org/0000-0002-6601-2165] synonym: "CNS white matter layer" EXACT [] synonym: "white matter layer" BROAD [] synonym: "white matter layer of neuraxis" EXACT [FMA:83898] xref: FMA:83898 is_a: UBERON:0022303 ! nervous system cell part layer [Term] id: UBERON:0016550 name: spinal cord column namespace: uberon is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0016551 name: subdivision of spinal cord ventral column namespace: uberon subset: non_informative is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0005375 ! spinal cord ventral column [Term] id: UBERON:0016554 name: white matter of midbrain namespace: uberon def: "A white matter that is part of the midbrain." [OBOL:automatic] subset: human_reference_atlas synonym: "mesencephalic white matter" EXACT [HBA:MESWM] xref: DHBA:10650 xref: FMA:83936 xref: HBA:265505382 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001891 ! midbrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0016555 name: stria of telencephalon namespace: uberon def: "A stria of neuraxis that is part of a telencephalon." [OBOL:automatic] synonym: "telencephalon stria" EXACT [FMA:67950] xref: FMA:67950 is_a: UBERON:0011299 ! white matter of telencephalon is_a: UBERON:0013199 ! stria of neuraxis relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0016559 name: superficial cerebral vein namespace: uberon def: "The superficial cerebral veins are a group of veins in the head. This group includes the superior cerebral veins." [Wikipedia:Superficial_cerebral_veins] synonym: "cortical cerebral vein" EXACT [FMA:50982] xref: FMA:50982 xref: Wikipedia:Superficial_cerebral_veins is_a: UBERON:0001663 {source="FMA"} ! cerebral vein [Term] id: UBERON:0016564 name: deep cerebral vein namespace: uberon def: "The deep cerebral veins are a group of veins in the head. This group includes the superior thalamostriate vein." [Wikipedia:Deep_cerebral_veins] xref: FMA:50989 xref: Wikipedia:Deep_cerebral_veins is_a: UBERON:0001663 {source="FMA"} ! cerebral vein [Term] id: UBERON:0016565 name: cerebral blood vessel namespace: uberon def: "A blood vessel that is part of a cerebellum." [OBOL:automatic] is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0008998 ! vasculature of brain [Term] id: UBERON:0016567 name: statoconial membrane namespace: uberon def: "An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork." [http://orcid.org/0000-0002-6601-2165, PMID:2482728] comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/ synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948] synonym: "otolith membrane" NARROW [] xref: FMA:75570 relationship: part_of UBERON:0002518 ! otolith organ [Term] id: UBERON:0016568 name: gelatinous layer of statoconial membrane namespace: uberon xref: FMA:75588 relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane [Term] id: UBERON:0016569 name: subcupular meshwork of statoconial membrane namespace: uberon def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948] relationship: part_of UBERON:0016567 ! statoconial membrane [Term] id: UBERON:0016570 name: lamina of gray matter of spinal cord namespace: uberon synonym: "rexed lamina" EXACT [FMA:68861] xref: FMA:68861 xref: http://neurolex.org/wiki/Category\:Rexed_spinal_cord_parcellation_scheme_region xref: Wikipedia:Rexed_laminae is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0016574 name: lamina III of gray matter of spinal cord namespace: uberon synonym: "lamina 3" RELATED [NeuroNames:1695] synonym: "lamina III" RELATED [NeuroNames:1695] synonym: "lamina spinale III" EXACT OMO:0003011 [FMA:68864, FMA:TA] synonym: "lamina spinalis III" RELATED OMO:0003011 [NeuroNames:1695] synonym: "rexed lamina III" EXACT [FMA:68864] synonym: "Rexed's lamina III" RELATED [NeuroNames:1695] synonym: "spinal lamina III" EXACT [FMA:68864] xref: FMA:68864 xref: neuronames:1695 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord [Term] id: UBERON:0016575 name: lamina IV of gray matter of spinal cord namespace: uberon synonym: "lamina 4" RELATED [NeuroNames:1696] synonym: "lamina IV" RELATED [NeuroNames:1696] synonym: "lamina spinale IV" EXACT OMO:0003011 [FMA:68865, FMA:TA] synonym: "lamina spinalis IV" RELATED OMO:0003011 [NeuroNames:1696] synonym: "rexed lamina IV" EXACT [FMA:68865] synonym: "Rexed's lamina IV" RELATED [NeuroNames:1696] synonym: "spinal lamina IV" EXACT [FMA:68865] xref: FMA:68865 xref: neuronames:1696 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord [Term] id: UBERON:0016576 name: lamina V of gray matter of spinal cord namespace: uberon def: "Spinal lamina V is a lamina of the spinal cord. It is also known as the neck of the posterior horn." [Wikipedia:Spinal_lamina_V] synonym: "lamina 5" RELATED [NeuroNames:1698] synonym: "lamina spinalis V" RELATED OMO:0003011 [NeuroNames:1698] synonym: "lamina V" RELATED [NeuroNames:1698] synonym: "neck of the dorsal horn" RELATED [NeuroNames:1698] synonym: "rexed lamina V" EXACT [FMA:68866] synonym: "Rexed's lamina V" RELATED [NeuroNames:1698] synonym: "spinal lamina V" EXACT [FMA:68866] xref: FMA:68866 xref: neuronames:1698 xref: Wikipedia:Spinal_lamina_V is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord [Term] id: UBERON:0016577 name: lamina VI of gray matter of spinal cord namespace: uberon def: "Spinal lamina VI is a lamina of the spinal cord. It is also known as the base of the posterior horn." [Wikipedia:Spinal_lamina_VI] synonym: "basal nucleus of the dorsal horn" RELATED [NeuroNames:2007] synonym: "base of dorsal horn of spinal cord" RELATED [NeuroNames:2007] synonym: "base of posterior horn of spinal cord" RELATED [NeuroNames:2007] synonym: "base of the dorsal horn" RELATED [NeuroNames:1699] synonym: "base of the posterior horn" RELATED [NeuroNames:2007] synonym: "basis cornuis dorsalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus dorsalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus dorsalis medullae spinalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus posterioris" RELATED OMO:0003011 [NeuroNames:2007] synonym: "basis cornus posterioris medullae spinalis" RELATED OMO:0003011 [NeuroNames:2007] synonym: "lamina 6" RELATED OMO:0003011 [NeuroNames:1699] synonym: "lamina spinalis VI" RELATED OMO:0003011 [NeuroNames:1699] synonym: "lamina VI" RELATED OMO:0003011 [NeuroNames:1699] synonym: "rexed lamina VI" EXACT [FMA:68867] synonym: "Rexed's lamina VI" RELATED [NeuroNames:1699] synonym: "spinal cord basal nucleus" RELATED [MA:0001120] synonym: "spinal lamina VI" EXACT [FMA:68867] xref: EMAPA:37632 {source="MA:th"} xref: FMA:68867 xref: MA:0001120 xref: neuronames:1699 xref: neuronames:2007 xref: Wikipedia:Spinal_lamina_VI is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord property_value: IAO:0000116 "consider splitting" xsd:string [Term] id: UBERON:0016578 name: lamina VII of gray matter of spinal cord namespace: uberon synonym: "lamina 7" RELATED OMO:0003011 [NeuroNames:1700] synonym: "lamina spinalis VII" RELATED OMO:0003011 [NeuroNames:1700] synonym: "lamina VII" RELATED OMO:0003011 [NeuroNames:1700] synonym: "rexed lamina VII" EXACT [FMA:68868] synonym: "Rexed's lamina VII" RELATED [NeuroNames:1700] synonym: "spinal lamina VII" EXACT [FMA:68868] xref: FMA:68868 xref: neuronames:1700 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002257 {source="https://github.com/obophenotype/uberon/issues/1277"} ! ventral horn of spinal cord [Term] id: UBERON:0016579 name: lamina VIII of gray matter of spinal cord namespace: uberon synonym: "lamina 8" RELATED OMO:0003011 [NeuroNames:1701] synonym: "lamina spinalis" RELATED OMO:0003011 [NeuroNames:1701] synonym: "lamina VIII" RELATED [NeuroNames:1701] synonym: "rexed lamina VIII" EXACT [FMA:68869] synonym: "Rexed's lamina VIII" RELATED [NeuroNames:1701] synonym: "spinal lamina VIII" EXACT [FMA:68869] xref: FMA:68869 xref: neuronames:1701 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0034771 {source="https://github.com/obophenotype/uberon/issues/1277"} ! ventral commissural nucleus of spinal cord [Term] id: UBERON:0016580 name: lamina IX of gray matter of spinal cord namespace: uberon synonym: "rexed lamina IX" EXACT [FMA:68870] synonym: "spinal lamina IX" EXACT [FMA:68870] xref: FMA:68870 is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord [Term] id: UBERON:0016610 name: nucleus proprius of spinal cord namespace: uberon def: "The Nucleus proprius is a layer of the spinal cord adjacent to the substantia gelatinosa. Nucleus proprius constitutes the bulk of the dorsal horn and receives inputs from the dorsal root ganglions that carry sensory information, such as light touch, as well as pain and temperature information. Cells in this nucleus project to deeper laminae of the spinal cord, to the posterior column nuclei, and to other supraspinal relay centers including the midbrain, thalamus, and hypothalamus. Rexed laminae III, IV, and V make up the nucleus propius Nucleus proprius (NP), along with nucleus dorsalis (ND) are involved in sensing fine touch and proprioception." [Wikipedia:Nucleus_proprius_of_spinal_cord] synonym: "nucleus proprius" RELATED [NeuroNames:1633, Wikipedia:Nucleus_proprius_of_spinal_cord] synonym: "nucleus proprius columnae posterioris" RELATED OMO:0003011 [NeuroNames:1633] synonym: "nucleus proprius cornu dorsalis" RELATED OMO:0003011 [NeuroNames:1633] synonym: "nucleus proprius dorsalis" RELATED OMO:0003011 [NeuroNames:1633] synonym: "nucleus proprius medullae spinalis" EXACT OMO:0003011 [FMA:73906, FMA:TA] synonym: "nucleus proprius of the spinal cord" RELATED [NeuroNames:1633] synonym: "proper sensory nucleus" EXACT [FMA:73906] synonym: "proper sensory nucleus" RELATED [NeuroNames:1633] xref: FMA:73906 xref: neuronames:1633 xref: Wikipedia:Nucleus_proprius_of_spinal_cord is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0016633 name: parvocellular reticular nucleus namespace: uberon def: "The parvocellular reticular nucleus is part of the brain located dorsolateral to the nucleus reticularis pontis caudalis. The dorsal portion of the reticular nucleus has been shown to innervate the mesencephalic trigeminal nucleus and its surrounding area. Also, it projects to the facial nucleus, hypoglossal nucleus and parabrachial nucleus along with parts of the caudal parvocellular reticular formation. This nucleus is also involved in expiration with a part of the gigantocellular nucleus." [Wikipedia:Parvocellular_reticular_nucleus] synonym: "nucleus parvocellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "nucleus reticularis parvicellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "nucleus reticularis parvocellaris" RELATED [Wikipedia:Parvocellular_reticular_nucleus] synonym: "nucleus reticularis parvocellularis" EXACT [FMA:TA] synonym: "nucleus reticularis parvocellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "parvicellular reticular nucleus" EXACT [FMA:72575] synonym: "parvicellular reticular nucleus" RELATED [NeuroNames:728] synonym: "parvocellular nucleus" RELATED [Wikipedia:Parvocellular_reticular_nucleus] synonym: "parvocellular reticular nucleus" EXACT [FMA:72575] synonym: "parvocellular reticular nucleus" RELATED [NeuroNames:728] xref: DHBA:12618 xref: FMA:72575 xref: HBA:9624 xref: MBA:852 xref: neuronames:728 xref: Wikipedia:Parvocellular_reticular_nucleus is_a: UBERON:0002154 ! lateral reticular nucleus is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata relationship: part_of UBERON:0009775 {source="FMA"} ! lateral medullary reticular complex [Term] id: UBERON:0016634 name: premotor cortex namespace: uberon def: "The premotor cortex is an area of motor cortex lying within the frontal lobe of the brain. It extends 3 mm anterior to the primary motor cortex, near the Sylvian fissure, before narrowing to approximately 1 mm near the medial longitudinal fissure, which serves as the posterior border for the prefrontal cortex. The premotor cortex is largely equivalent to Brodmann area 6. Activity within this region is critical to the sensory guidance of movement and control of proximal and trunk muscles of the body." [Wikipedia:Premotor_cortex] synonym: "intermediate precentral cortex" RELATED [NeuroNames:2331] synonym: "nonprimary motor cortex" RELATED [NeuroNames:2331] synonym: "premotor" RELATED [Wikipedia:Premotor_cortex] synonym: "premotor area" RELATED [NeuroNames:2331] synonym: "premotor cortex" RELATED [NeuroNames:2331] synonym: "premotor cortex (area 6)" EXACT [DHBA:10168] synonym: "premotor region" RELATED [Wikipedia:Premotor_cortex] synonym: "promotor cortex" RELATED [NeuroNames:2331] synonym: "secondary motor areas" RELATED [NeuroNames:2331] synonym: "secondary motor cortex" RELATED [NeuroNames:2331] synonym: "secondary somatomotor areas" RELATED [NeuroNames:2331] xref: DHBA:10168 xref: FMA:224852 xref: MBA:993 xref: neuronames:2331 xref: SCTID:90928005 xref: Wikipedia:Premotor_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0016635 name: paragigantocellular nucleus namespace: uberon xref: DHBA:12626 xref: MBA:938 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata [Term] id: UBERON:0016636 name: supplemental motor cortex namespace: uberon def: "The supplementary motor area (SMA) is a part of the sensorimotor cerebral cortex (perirolandic, i.e. on each side of the Rolando or central sulcus). It was included, on purely cytoarchitectonic arguments, in area 6 of Brodmann and the Vogts. It is located on the medial face of the hemisphere, just in front of primary motor cortex. This is an element that appeared late in evolution, in monkeys, linked to the appearance of a true medial pallidum." [Wikipedia:Supplementary_motor_area] subset: pheno_slim synonym: "area F3" RELATED [NeuroNames:3176] synonym: "jPL (SMC)" BROAD OMO:0003000 [FMA:224858, FMA:CMA] synonym: "juxtapositional lobule cortex" RELATED [FMA:224858] synonym: "SMA proper" RELATED [NeuroNames:3176] synonym: "supplementary motor area" RELATED [NeuroNames:3176, Wikipedia:Supplementary_motor_area] synonym: "supplementary motor area (M II)" RELATED [NeuroNames:3176] synonym: "supplementary motor cortex" RELATED [NeuroNames:3176] xref: FMA:224858 xref: neuronames:3176 xref: Wikipedia:Supplementary_motor_area is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0016637 name: lateral periolivary nucleus namespace: uberon def: "Lateral component of the periolivary nucleus." [http://medical-dictionary.thefreedictionary.com/periolivary+nuclei] xref: DHBA:12465 xref: FMA:226217 is_a: UBERON:0002971 {source="cjm"} ! periolivary nucleus [Term] id: UBERON:0016641 name: subparafascicular nucleus namespace: uberon def: "The term subparafascicular nucleus refers to a cell group located ventral to the parafascicular nucleus in the thalamus. Identified by internal structure, it is present in the human ( Mai-1997 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-1998 ), and the mouse ( Hof-2000 )." [NeuroNames:2253] synonym: "nucleus subparafascicularis thalami" RELATED OMO:0003011 [NeuroNames:2253] synonym: "subparafascicular nucleus" RELATED [NeuroNames:2253] synonym: "subparafascicular nucleus of the thalamus" RELATED [NeuroNames:2253] synonym: "subparafascicular nucleus thalamus" RELATED [NeuroNames:2253] synonym: "subparafascicular thalamic nucleus" RELATED [NeuroNames:2253] xref: DHBA:13054 xref: FMA:226239 xref: MBA:406 xref: neuronames:2253 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0010225 ! thalamic complex [Term] id: UBERON:0016824 name: lateral paragigantocellular nucleus namespace: uberon synonym: "lateral paragigantocellular nucleus" RELATED [NeuroNames:731] synonym: "lateral paragigantocellular reticular nucleus" EXACT [FMA:72577] synonym: "nucleus paragigantocellularis lateralis" RELATED OMO:0003011 [NeuroNames:731] synonym: "paragigantocellular nucleus, lateral part" EXACT [FMA:72577] synonym: "paragigantocellular nucleus, lateral part" RELATED [NeuroNames:731] synonym: "paragigantocellular reticular nucleus, lateral part" RELATED [NeuroNames:731] xref: DHBA:12629 xref: FMA:72577 xref: HBA:9601 xref: MBA:978 xref: neuronames:731 xref: NLX:143582 is_a: UBERON:0016635 ! paragigantocellular nucleus [Term] id: UBERON:0016825 name: dorsal paragigantocellular nucleus namespace: uberon synonym: "dorsal paragigantocellular nucleus" RELATED [NeuroNames:732] synonym: "dorsal paragigantocellular reticular nucleus" EXACT [FMA:72578] synonym: "nucleus paragigantocellularis dorsalis" RELATED OMO:0003011 [NeuroNames:732] synonym: "paragigantocellular nucleus, dorsal part" EXACT [FMA:72578] synonym: "paragigantocellular nucleus, dorsal part" RELATED [NeuroNames:732] synonym: "paragigantocellular reticular nucleus, dorsal part" RELATED [NeuroNames:732] synonym: "posterior paragigantocellular reticular nucleus" EXACT [FMA:72578] xref: DHBA:12628 xref: FMA:72578 xref: HBA:9600 xref: MBA:970 xref: neuronames:732 is_a: UBERON:0016635 ! paragigantocellular nucleus [Term] id: UBERON:0016826 name: paramedian medullary reticular complex namespace: uberon synonym: "nuclei paramedianes myelencephali" RELATED OMO:0003011 [NeuroNames:734] synonym: "paramedial reticular nuclei" RELATED [NeuroNames:734] synonym: "paramedian group (medullary reticular formation)" EXACT [FMA:72580] synonym: "paramedian group (medullary reticular formation)" RELATED [NeuroNames:734] synonym: "paramedian medullary reticular group" EXACT [FMA:72580] synonym: "paramedian medullary reticular group" RELATED [NeuroNames:734] xref: FMA:72580 xref: neuronames:734 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation [Term] id: UBERON:0016827 name: dorsal paramedian reticular nucleus namespace: uberon def: "Small nucleus in the brainstem of human, located adjacent and medial to the nucleus prepositus in the dorsal medulla, described in several atlases of human brain stem. In transverse sections, it is oval with its long axis aligned with the dorsal border of the brainstem. It begins at about the same A-P level as the nucleus prepositus, just rostral to the hypoglossal nucleus. It includes calretinin immunoreactive large cells with oval or polygonal cell bodies. Cells are not immunoreactive for either calbindin or parvalbumin, but a few fibers immunoreactive to each protein are found within its central region. Cells in PMD are also immunoreactive to nNOS, and immunoreactivity to a neurofilament protein shows many labeled cells and fibers. According to Baizer et al., no equivalent structure was observed in the cat, rat, mouse or monkey atlas although they did not look at the brains of the great apes." [NLX:143549] synonym: "dorsal paramedian nuclei of raphe" EXACT [FMA:72581] synonym: "dorsal paramedian nucleus" EXACT [FMA:72581] synonym: "dorsal paramedian reticular nucleus" RELATED [NeuroNames:735] synonym: "nucleus paramedianus dorsalis" RELATED OMO:0003011 [NeuroNames:735] synonym: "nucleus paramedianus posterior" RELATED OMO:0003011 [NeuroNames:735] synonym: "nucleus reticularis paramedianus myelencephali" RELATED OMO:0003011 [NeuroNames:735] synonym: "posterior paramedian nucleus" EXACT [FMA:72581] xref: DHBA:12597 xref: FMA:72581 xref: neuronames:735 xref: NLX:143549 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata relationship: part_of UBERON:0016826 ! paramedian medullary reticular complex [Term] id: UBERON:0016832 name: paratrigeminal nucleus namespace: uberon def: "The term paratrigeminal nucleus refers to a group of cells located lateral to the spinal trigeminal tract of the medulla and medial to the spinocerebellar tracts at the level of the spinal trigeminal nucleus. The cells, identified by Nissl stain, are partially embedded in the adjacent tracts; their distribution varies by species. The paratrigeminal nucleus may represent an extension of the lateral cervical nucleus into the medulla ( Swanson-2004 ). It is found in the human ( Carpenter-1983 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). In the functional model of central nervous system organization it is classified as part of the subcortical somatosensory system ( Swanson-2004 )." [NeuroNames:761] synonym: "lateral cervical nucleus, trigeminal extension" RELATED [NeuroNames:761] synonym: "nucleus paratrigeminalis" RELATED OMO:0003011 [NeuroNames:761] synonym: "paratrigeminal nucleus" RELATED [NeuroNames:761] xref: BAMS:PAT xref: DHBA:12656 xref: FMA:72599 xref: HBA:9630 xref: neuronames:761 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0016843 name: lateral nucleus of trapezoid body namespace: uberon def: "One of two potential parts of the trapezoid nucleus. Separated by an indistinct boundary, the other is the medial trapezoid nucleus ( Crosby-1962 ). The existence of the trapezoid nucleus in the human is disputed ( Bazwinsky-2003 )." [NeuroNames:2852] synonym: "lateral nucleus of the trapezoid body" RELATED [NeuroNames:2852] synonym: "lateral trapezoid nucleus" RELATED [NeuroNames:2852] synonym: "LNTB" EXACT OMO:0003000 [] xref: DHBA:12459 xref: DMBA:17274 xref: FMA:75730 xref: neuronames:2852 is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0002128 ! superior olivary complex relationship: part_of UBERON:0002932 {notes="to be verified"} ! trapezoid body [Term] id: UBERON:0016848 name: retroambiguus nucleus namespace: uberon def: "The term retroambiguus nucleus refers to a group of neurons in the medulla at the caudal end of the nucleus ambiguus, from which the cranial part of the accessory nerve originates ( Crosby-1962 )." [NeuroNames:2319] synonym: "nucleus retroambigualis" RELATED OMO:0003011 [NeuroNames:2319] synonym: "nucleus retroambiguus" EXACT OMO:0003011 [FMA:77096, FMA:TA] synonym: "retroambiguus nucleus" RELATED [NeuroNames:2319] xref: FMA:77096 xref: HBA:9650 xref: neuronames:2319 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata [Term] id: UBERON:0016850 name: nucleus of phrenic nerve namespace: uberon def: "Neuron cell bodies located in the more medial portions of the anterior horn at cervical levels C3-C7 that innervate the diaphragm via the phrenic nerve." [http://medical-dictionary.thefreedictionary.com/nucleus+of+phrenic+nerve] synonym: "nucleus nervi phrenici" RELATED OMO:0003011 [NeuroNames:2004] synonym: "nucleus of phrenic nerve" RELATED [NeuroNames:2004] synonym: "nucleus of the phrenic nerve" RELATED [NeuroNames:2004] synonym: "nucleus phrenicus columnae anterioris medullae spinalis" RELATED OMO:0003011 [NeuroNames:2004] synonym: "phrenic neural nucleus" EXACT [FMA:77458] synonym: "phrenic nucleus" EXACT [FMA:77458] synonym: "phrenic nucleus of anterior column of spinal cord" RELATED [NeuroNames:2004] xref: FMA:77458 xref: neuronames:2004 is_a: UBERON:0011777 {source="FMA"} ! nucleus of spinal cord [Term] id: UBERON:0017631 name: calcified structure of brain namespace: uberon xref: Wikipedia:Corpora_arenacea relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0017632 name: pineal corpora arenacea namespace: uberon def: "A calcified structure of brain that is part of a pineal body." [OBOL:automatic] xref: SCTID:369232008 xref: Wikipedia:Corpora_arenacea is_a: UBERON:0017631 ! calcified structure of brain relationship: part_of UBERON:0001905 ! pineal body [Term] id: UBERON:0017633 name: choroid plexus corpora arenacea namespace: uberon def: "A calcified structure of brain that is part of a choroid plexus." [OBOL:automatic] is_a: UBERON:0017631 ! calcified structure of brain relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0017635 name: paired venous dural sinus namespace: uberon synonym: "paired dural venous sinus" EXACT [FMA:52568] xref: FMA:52568 is_a: UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0017637 name: marginal venous sinus namespace: uberon def: "A paired dural venous sinus at the rim of the foramen magnum." [PMID:20682099] subset: human_reference_atlas synonym: "intracranial marginal sinus" EXACT [] synonym: "marginal sinus" RELATED [FMA:50766] xref: EHDAA2:0001064 xref: EHDAA:8693 xref: FMA:50766 is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0017638 name: primitive marginal sinus namespace: uberon def: "The primitive marginal sinuses (PMS) are embryonic sinuses forming the later superior sagittal sinus." [PMID:22744799] synonym: "marginal sinus" RELATED [] xref: EHDAA2:0001514 is_a: UBERON:0017635 ! paired venous dural sinus [Term] id: UBERON:0017640 name: unpaired venous dural sinus namespace: uberon synonym: "unpaired dural venous sinus" EXACT [FMA:52569] xref: FMA:52569 is_a: UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0017641 name: meningeal branch of spinal nerve namespace: uberon def: "Branch of spinal nerve that innervates the structures of the vertebral column." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] subset: human_reference_atlas synonym: "ramus meningeus nervorum spinales" EXACT [FMA:5988] synonym: "recurrent meningeal branch of spinal nerve" EXACT [FMA:5988] synonym: "sinuvertebral branch of spinal nerve" EXACT [FMA:5988] synonym: "sinuvertebral nerve" RELATED [FMA:5988] xref: FMA:5988 xref: SCTID:308794007 xref: Wikipedia:Meningeal_branches_of_spinal_nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0005476 ! spinal nerve trunk property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0017642 name: communicating branch of spinal nerve namespace: uberon def: "Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans." [Wikipedia:Rami_communicans] subset: human_reference_atlas synonym: "rami communicantes" BROAD [Wikipedia:Rami_communicans] synonym: "rami communicantes of spinal nerve" RELATED [Wikipedia:Rami_communicans] xref: FMA:5874 xref: SCTID:310727003 xref: Wikipedia:Rami_communicans is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0005476 ! spinal nerve trunk property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018104 name: parafoveal part of retina namespace: uberon def: "The intermediate belt surrounding the fovea centralis." [http://orcid.org/0000-0002-6601-2165] synonym: "parafoveal belt" RELATED [] synonym: "parafoveal retina" RELATED [] xref: SCTID:264120002 relationship: part_of UBERON:0000053 ! macula lutea property_value: UBPROP:0000010 "ganglion cell layer is composed of more than five rows of cells, as well as the highest density of cones" xsd:string [Term] id: UBERON:0018105 name: perifoveal part of retina namespace: uberon def: "The outermost region surrounding the fovea centralis." [http://orcid.org/0000-0002-6601-2165] synonym: "perifoveal belt" RELATED [] synonym: "perifoveal retina" RELATED [] xref: SCTID:280617008 relationship: part_of UBERON:0000053 ! macula lutea property_value: UBPROP:0000010 "the ganglion cell layer contains two to four rows of cells" xsd:string [Term] id: UBERON:0018107 name: foveola of retina namespace: uberon def: "A region of the fovea centralis that lies in the center of the fovea and contains only cone cells, and a cone-shaped zone of Müller cells." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas synonym: "foveola" RELATED [] xref: SCTID:399857002 xref: Wikipedia:Foveola relationship: part_of UBERON:0001786 ! fovea centralis property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "in humans is approximately 0.35 mm in diameter" xsd:string [Term] id: UBERON:0018141 name: anterior perforated substance namespace: uberon def: "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989)." [BIRNLEX:1096] synonym: "anterior perforated area" EXACT [FMA:61891] synonym: "anterior perforated space" EXACT [FMA:61891] synonym: "area olfactoria (Mai)" RELATED OMO:0003011 [NeuroNames:282] synonym: "eminentia parolfactoria" RELATED OMO:0003011 [NeuroNames:282] synonym: "olfactory area (Carpenter)" RELATED [NeuroNames:282] synonym: "olfactory area (mai)" EXACT [FMA:61891] synonym: "olfactory tubercle" RELATED INCONSISTENT [FMA:61891] synonym: "olfactory tubercle (Ganser)" RELATED [NeuroNames:282] synonym: "rostral perforated substance" RELATED [NeuroNames:282] synonym: "substantia perforata anterior" EXACT OMO:0003011 [Wikipedia:Anterior_perforated_substance] synonym: "tuber olfactorium" RELATED OMO:0003011 [NeuroNames:282] xref: BAMS:APS xref: BIRNLEX:1096 xref: DHBA:10642 xref: FMA:61891 xref: neuronames:282 {source="BIRNLEX:1096"} xref: SCTID:369108006 xref: UMLS:C0162436 {source="BIRNLEX:1096"} xref: Wikipedia:Anterior_perforated_substance is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000001 "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." xsd:string {source="FMA:61891"} [Term] id: UBERON:0018236 name: nucleus of Bischoff namespace: uberon def: "A midline nucleus of the dorsal motor column found in animals with a prominent tail, including alligator, some birds, kangaroo, rat, shrew, great anteater." [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of Bishoff" EXACT [] is_a: UBERON:0018238 {source="ISBN:978-1-4615-0037-7"} ! dorsal column nucleus property_value: RO:0002175 NCBITaxon:10088 {notes="possible present in mouse", source="ISBN:0123813611"} [Term] id: UBERON:0018237 name: dorsal column-medial lemniscus pathway namespace: uberon def: "A sensory tract originating in the spinal cord responsible for transmitting fine touch, vibration and conscious proprioceptive information from the body to the cerebral cortex. The components include the fasciculus gracilis and fasciculus cuneatus." [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "DCML" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "DCML pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column tract" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column-medial lemniscus pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column-medial lemniscus system" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column-medial lemniscus tract" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "medial lemniscus tracts" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column-medial leminscus pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column-medial lemniscus system" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "posterior column/medial leminscus pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] xref: DMBA:17759 xref: Wikipedia:Posterior_column-medial_lemniscus_pathway is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0018238 name: dorsal column nucleus namespace: uberon def: "A nucleus that contain secondary neurons of the dorsal column-medial lemniscus pathway, which carries fine touch and proprioceptive information from the body to the brain. Examples: gracile nucleus, cuneat nucleus, nucleus of Bishoff." [ISBN:978-1-4615-0037-7] synonym: "dorsal column nuclei" RELATED OMO:0003004 [NeuroNames:1947] xref: MBA:720 xref: neuronames:1947 xref: Wikipedia:Dorsal_column_nuclei is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway [Term] id: UBERON:0018262 name: dorsal zone of medial entorhinal cortex namespace: uberon synonym: "dorsal zone of the medial part of the entorhinal area" RELATED [NeuroNames:3141] synonym: "entorhinal area, medial part, dorsal zone" EXACT [ABA:ENTm] synonym: "entorhinal area, medial part, dorsal zone" RELATED [NeuroNames:3141] synonym: "entorhinal area, medial part, dorsal zone, layers 1-6" RELATED [NeuroNames:3141] xref: MBA:926 xref: neuronames:3141 relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] id: UBERON:0018263 name: ventral zone of medial entorhinal cortex namespace: uberon synonym: "entorhinal area, medial part, ventral zone" EXACT [ABA:ENTmv] synonym: "entorhinal area, medial part, ventral zone" RELATED [NeuroNames:3142] synonym: "entorhinal area, medial part, ventral zone [Haug]" RELATED [NeuroNames:3142] synonym: "ventral zone of the medial part of the entorhinal area" RELATED [NeuroNames:3142] xref: MBA:934 xref: neuronames:3142 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] id: UBERON:0018264 name: dorsal lateral ganglionic eminence namespace: uberon def: "The dorsal region of the lateral ganglionic eminence. The cells in this area give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb." [GO:0021851] relationship: part_of UBERON:0004025 ! lateral ganglionic eminence [Term] id: UBERON:0018389 name: interoceptor namespace: uberon def: "A sensory receptor that detects stimulus within the body. Examples of stimuli that would be detected by interoceptors include blood pressure and blood oxygen level." [Wikipedia:Interoceptor] synonym: "enteroceptor" EXACT [FMA:84656] synonym: "visceroceptor" EXACT [FMA:84656] xref: FMA:84656 xref: Wikipedia:Interoceptor is_a: UBERON:0012451 {source="FMA"} ! sensory receptor [Term] id: UBERON:0018391 name: chemoreceptor namespace: uberon def: "A sensory receptor that detects chemical stimulus within the body." [http://orcid.org/0000-0002-6601-2165] xref: FMA:85604 is_a: UBERON:0018389 {source="FMA"} ! interoceptor property_value: UBPROP:0000001 "Cells specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." xsd:string {source="MESH:A08.800.550.700.120"} [Term] id: UBERON:0018392 name: arterial baroreceptor namespace: uberon def: "Arterial baroreceptors are stretch receptors that are stimulated by distortion of the arterial wall when pressure changes." [Wikipedia:Baroreceptor#Arterial_baroreceptors] synonym: "arterial stretch receptor" RELATED [MESH:A08.800.050.800.900.700] is_a: UBERON:0004019 ! baroreceptor [Term] id: UBERON:0018393 name: low-pressure baroreceptor namespace: uberon def: "Found in large systemic veins, in pulmonary vessels, and in the walls of the right atrium and ventricles of the heart (the atrial volume receptors)." [Wikipedia:Baroreceptor#Low-pressure_baroreceptors] is_a: UBERON:0004019 ! baroreceptor [Term] id: UBERON:0018394 name: vein baroreceptor namespace: uberon def: "A baroreceptor that located_in a vein." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018395 name: cardiac baroreceptor namespace: uberon def: "A baroreceptor that located_in a heart." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018396 name: pulmonary baroreceptor namespace: uberon def: "A baroreceptor that located_in a pulmonary vascular system." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018398 name: superior alveolar nerve namespace: uberon synonym: "superior dental nerve" EXACT [FMA:52930] xref: FMA:52930 xref: SCTID:280235006 xref: SCTID:280239000 is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000377 ! maxillary nerve [Term] id: UBERON:0018401 name: posterior superior alveolar nerve namespace: uberon def: "The posterior superior alveolar branches (posterior superior dental branches) arise from the trunk of the maxillary nerve just before it enters the infraorbital groove; they are generally two in number, but sometimes arise by a single trunk. They descend on the tuberosity of the maxilla and give off several twigs to the gums and neighboring parts of the mucous membrane of the cheek. They then enter the posterior alveolar canals on the infratemporal surface of the maxilla, and, passing from behind forward in the substance of the bone, communicate with the middle superior alveolar nerve, and give off branches to the lining membrane of the maxillary sinus and gingival and dental branches to each molar tooth from a superior dental plexus; these branches enter the apical foramina at the roots of the teeth. The posterior superior alveolar nerve innervates the second and third maxillary molars, and two of the three roots of the maxillary first molar (all but the mesiobuccal root). When giving a Posterior Superior Alveolar nerve block, it will anesthetize the mesialbuccal root of the maxillary first molar approximately 72% of the time." [Wikipedia:Posterior_superior_alveolar_nerve] synonym: "posterior superior alveolar branches" RELATED [Wikipedia:Posterior_superior_alveolar_nerve] synonym: "posterior superior dental nerve" EXACT [FMA:52931] xref: FMA:52931 xref: Wikipedia:Posterior_superior_alveolar_nerve is_a: UBERON:0018398 {source="FMA"} ! superior alveolar nerve [Term] id: UBERON:0018405 name: inferior alveolar nerve namespace: uberon synonym: "inferior dental nerve" EXACT [FMA:53243] xref: FMA:53243 xref: SCTID:280261005 is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0003721 ! lingual nerve [Term] id: UBERON:0018406 name: mental nerve namespace: uberon def: "Mental nerve is a general somatic afferent (sensory) nerve which provides sensation to the anterior aspects of the chin and lower lip as well as the buccal gingivae of the mandibular anterior teeth and the premolars. It is a branch of the posterior trunk of the inferior alveolar nerve, which is itself a branch of the mandibular division of the trigeminal nerve (CN V). The nerve emerges at the mental foramen in the mandibula, and divides beneath the Depressor anguli oris muscle into three branches: one descends to the skin of the chin. two ascend to the skin and mucous membrane of the lower lip. These branches communicate freely with the facial nerve." [Wikipedia:Mental_nerve] xref: FMA:53250 xref: SCTID:280138001 xref: Wikipedia:Mental_nerve is_a: UBERON:0001027 ! sensory nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0018405 ! inferior alveolar nerve [Term] id: UBERON:0018408 name: infra-orbital nerve namespace: uberon def: "A branch of the maxillary nerve that enters the infraorbital canal and innervates the lower eyelid, upper lip, the nasal vestibule, the upper incisors, canines, premolars, upper gums, lower eyelid and conjunctiva, and part of the nose." [http://medical-dictionary.thefreedictionary.com/infra-orbital+nerve, Wikipedia:Infraorbital_nerve] synonym: "infra-orbital nerve" RELATED [Wikipedia:Infraorbital_nerve] synonym: "infraorbital nerve" EXACT [FMA:52978] synonym: "infraorbital portion" RELATED [Wikipedia:Infraorbital_nerve] xref: FMA:52978 xref: SCTID:280360008 xref: Wikipedia:Infraorbital_nerve is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0022298 ! lower eyelid nerve relationship: part_of UBERON:0000377 ! maxillary nerve [Term] id: UBERON:0018412 name: vidian nerve namespace: uberon def: "A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland." [http://medical-dictionary.thefreedictionary.com/vidian+nerve, Wikipedia:Nerve_of_pterygoid_canal] subset: human_reference_atlas synonym: "nerve of pterygoid canal" EXACT [FMA:67584] synonym: "nerve of the pterygoid canal" RELATED [Wikipedia:Nerve_of_pterygoid_canal] synonym: "pterygoid canal nerve" EXACT [FMA:67584] synonym: "vidian nerve" EXACT [FMA:67584] synonym: "vidian nerve" RELATED [Wikipedia:Nerve_of_pterygoid_canal] xref: FMA:67584 xref: SCTID:280273005 xref: Wikipedia:Nerve_of_pterygoid_canal is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001647 ! facial nerve property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "FMA classifies as an anatomical junction" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0018545 name: nucleus of the bulbocavernosus namespace: uberon def: "A cluster of motoneurons located in the anterior gray column of lumbar segments 5 and 6 of the spinal cord in the rat. Functionally it belongs to the somatic motoneuron pools of the subcortical motor system ( Swanson-2004 )." [NeuroNames:2700] synonym: "nucleus of the bulbocavernosus" RELATED [NeuroNames:2700] synonym: "nucleus of the bulbospongiosus" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "spinal nucleus of the bulbocavernosus" RELATED [https://www.msu.edu/~bjlab/snb.html] xref: neuronames:2700 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord property_value: RO:0002175 NCBITaxon:10114 property_value: UBPROP:0000011 "Before birth, male and female rats have the muscles and the SNB motoneurons innervating them, but both die in females in the first week of life[https://www.msu.edu/~bjlab/snb.html]" xsd:string [Term] id: UBERON:0018675 name: pelvic splanchnic nerve namespace: uberon def: "A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut." [Wikipedia:Pelvic_splanchnic_nerves] subset: human_reference_atlas synonym: "nervi erigentes" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi pelvici splanchnici" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi splanchnici pelvici" RELATED [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nn erigentes" RELATED [Wikipedia:Pelvic_splanchnic_nerves] synonym: "pelvic splanchnic nerve" RELATED [Wikipedia:Pelvic_splanchnic_nerves] synonym: "pelvic splanchnic parasympathetic nerve" EXACT [EHDAA2:0001432] xref: EHDAA2:0001432 xref: EHDAA:5628 xref: FMA:16901 xref: SCTID:311223006 xref: Wikipedia:Pelvic_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve is_a: UBERON:0004293 ! parasympathetic nerve relationship: part_of UBERON:0000011 {source="EHDAA2", source="WP"} ! parasympathetic nervous system property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018676 name: renal nerve plexus namespace: uberon def: "The renal plexus is formed by filaments from the celiac plexus, the aorticorenal ganglion, and the aortic plexus . It is joined also by the least splanchnic nerve. The nerves from these sources, fifteen or twenty in number, have a few ganglia developed upon them. They accompany the branches of the renal artery into the kidney; some filaments are distributed to the spermatic plexus and, on the right side, to the inferior vena cava." [Wikipedia:Renal_plexus] synonym: "plexus renalis" EXACT [FMA:TA] synonym: "renal plexus" EXACT [FMA:6636] xref: FMA:6636 xref: SCTID:280526000 xref: Wikipedia:Renal_plexus is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus [Term] id: UBERON:0018679 name: thoracic splanchnic nerve namespace: uberon def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers." [Wikipedia:Thoracic_splanchnic_nerves] subset: human_reference_atlas xref: FMA:6280 xref: Wikipedia:Thoracic_splanchnic_nerves is_a: UBERON:0003715 ! splanchnic nerve is_a: UBERON:0003824 ! nerve of thoracic segment relationship: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018680 name: greater splanchnic nerve namespace: uberon comment: The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. subset: human_reference_atlas synonym: "greater thoracic splanchnic nerve" EXACT [FMA:6281] xref: FMA:6281 xref: SCTID:280503007 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018681 name: lesser splanchnic nerve namespace: uberon comment: The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. subset: human_reference_atlas synonym: "lesser thoracic splanchnic nerve" EXACT [FMA:6282] xref: FMA:6282 xref: SCTID:280505000 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018683 name: lumbar splanchnic nerve namespace: uberon def: "The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut." [Wikipedia:Lumbar_splanchnic_nerves] subset: human_reference_atlas synonym: "lumbar splanchnic nerve" RELATED [Wikipedia:Lumbar_splanchnic_nerves] xref: FMA:6287 xref: SCTID:280507008 xref: Wikipedia:Lumbar_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018684 name: sacral splanchnic nerve namespace: uberon def: "A splanchnic nerve that connects the inferior hypogastric plexus to the sympathetic trunk in the pelvis." [Wikipedia:Sacral_splanchnic_nerves] xref: FMA:6288 xref: Wikipedia:Sacral_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve [Term] id: UBERON:0018687 name: glial limiting membrane namespace: uberon def: "The meshwork of astrocytic foot processes (glial end feet) covered by a basal lamina adjacent to the inner pial surface of the central nervous system." [http://neurolex.org/wiki/Nlx_subcell_100209] synonym: "glia limitans" EXACT OMO:0003011 [Wikipedia:Glia_limitans] xref: NIF_Subcellular:nlx_subcell_100209 xref: Wikipedia:Glia_limitans relationship: part_of UBERON:0000120 ! blood brain barrier [Term] id: UBERON:0019197 name: dorsal nerve of penis namespace: uberon def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the penis and innervates the the corpus cavernosum penis, the prepuce and the glans penis." [http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20penis, Wikipedia:Dorsal_nerve_of_the_penis] synonym: "dorsal nerve of penis" RELATED [Wikipedia:Dorsal_nerve_of_the_penis] synonym: "dorsal nerves of the penis" RELATED [Wikipedia:Dorsal_nerve_of_the_penis] synonym: "nervus dorsalis penis" EXACT OMO:0003011 [FMA:21869] synonym: "nervus dorsalis penis " EXACT OMO:0003011 [FMA:21869, FMA:TA] xref: FMA:21869 xref: SCTID:306800005 xref: Wikipedia:Dorsal_nerve_of_the_penis is_a: UBERON:0003444 ! pelvis nerve is_a: UBERON:0035649 ! nerve of penis relationship: part_of UBERON:0011390 ! pudendal nerve [Term] id: UBERON:0019198 name: dorsal nerve of clitoris namespace: uberon def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the clitoral shaft and innervates the the glans clitoris." [http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20clitoris, Wikipedia:Dorsal_nerve_of_clitoris] synonym: "dorsal nerve of the clitoris" RELATED [Wikipedia:Dorsal_nerve_of_clitoris] synonym: "nervus dorsalis clitoridis" EXACT [FMA:21870] xref: FMA:21870 xref: SCTID:367687005 xref: Wikipedia:Dorsal_nerve_of_clitoris is_a: UBERON:0003444 ! pelvis nerve is_a: UBERON:0035650 ! nerve of clitoris relationship: part_of UBERON:0011390 ! pudendal nerve [Term] id: UBERON:0019258 name: white matter of hindbrain namespace: uberon def: "A white matter that is part of the hindbrain." [OBOL:automatic] subset: human_reference_atlas xref: DHBA:10668 xref: FMA:268636 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0002028 ! hindbrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019261 name: white matter of forebrain namespace: uberon def: "A white matter that is part of the forebrain." [OBOL:automatic] subset: human_reference_atlas xref: DHBA:10557 xref: FMA:268634 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001890 ! forebrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019262 name: white matter of myelencephalon namespace: uberon def: "A white matter that is part of the myelencephalon." [OBOL:automatic] synonym: "myelencephalic white matter" EXACT [HBA:MYWM] xref: HBA:9298 is_a: UBERON:0019258 ! white matter of hindbrain relationship: part_of UBERON:0005290 ! myelencephalon [Term] id: UBERON:0019263 name: gray matter of hindbrain namespace: uberon subset: human_reference_atlas synonym: "gray matter of the hindbrain" EXACT [DHBA:HGM] xref: DHBA:10654 xref: FMA:268630 is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0002028 ! hindbrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019264 name: gray matter of forebrain namespace: uberon subset: human_reference_atlas xref: DHBA:10157 xref: FMA:268608 is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0001890 ! forebrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019267 name: gray matter of midbrain namespace: uberon subset: human_reference_atlas xref: DHBA:10649 xref: FMA:83913 is_a: UBERON:0003528 ! brain gray matter relationship: part_of UBERON:0001891 ! midbrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019269 name: gray matter of diencephalon namespace: uberon xref: FMA:83912 is_a: UBERON:0019264 ! gray matter of forebrain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0019272 name: mesomere 1 namespace: uberon synonym: "mesomere M1" EXACT [EHDAA2:0004353] xref: DHBA:12316 xref: DMBA:16650 xref: EHDAA2:0004353 is_a: UBERON:0014776 ! midbrain neuromere [Term] id: UBERON:0019274 name: mesomere 2 namespace: uberon synonym: "mesomere 2 (preisthmus or caudal midbrain)" EXACT [DMBA:m2] synonym: "mesomere M2" EXACT [EHDAA2:0004354] xref: DHBA:12317 xref: DMBA:16751 xref: EHDAA2:0004354 is_a: UBERON:0014776 ! midbrain neuromere [Term] id: UBERON:0019275 name: uncinate fasciculus of the forebrain namespace: uberon def: "A fiber pathway in the cerebral white matter that connects anterior portions of the temporal lobe with the inferior frontal gyrus and the middle frontal gyrus. It is not readily distinguished in myelin-stained cross-sections (adapted from Brain Info)." [NLX:98733] synonym: "uncinate fasciculus of cerebral hemisphere" RELATED [NeuroNames:1444] xref: HBA:9284 xref: neuronames:1444 xref: NLX:98733 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003044 ! uncinate fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0019278 name: inferior rostral gyrus namespace: uberon subset: human_reference_atlas xref: BIRNLEX:1447 xref: DHBA:12130 xref: HBA:4900 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019279 name: superior rostral gyrus namespace: uberon subset: human_reference_atlas synonym: "superior rostral gyrus" EXACT [BIRNLEX:1311] xref: BIRNLEX:1311 xref: DHBA:12129 xref: HBA:4897 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019280 name: rostral gyrus namespace: uberon subset: human_reference_atlas xref: DHBA:146034876 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019283 name: lateral longitudinal stria namespace: uberon synonym: "lateral white stria of lancisi" EXACT [FMA:62439] xref: DHBA:12064 xref: FMA:62439 xref: HBA:265505146 xref: neuronames:174 is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 {source="FMA"} ! stria of telencephalon relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus [Term] id: UBERON:0019284 name: rhombomere 9 namespace: uberon synonym: "r9" EXACT OMO:0003000 [DMBA:r9] xref: DMBA:17476 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019285 name: rhombomere 10 namespace: uberon synonym: "r10" EXACT OMO:0003000 [DMBA:r10] xref: DMBA:17538 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019286 name: rhombomere 11 namespace: uberon synonym: "r11" EXACT OMO:0003000 [DMBA:r11] xref: DMBA:17596 is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019289 name: accessory olfactory bulb external plexiform layer namespace: uberon synonym: "AOB, outer plexiform layer" EXACT [DMBA:AOPl] xref: DMBA:15965 xref: EMAPA:35107 xref: MA:0002932 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb [Term] id: UBERON:0019290 name: accessory olfactory bulb internal plexiform layer namespace: uberon synonym: "AOB, internal plexiform layer" EXACT [DMBA:AIPl] xref: DMBA:15962 xref: EMAPA:35110 xref: MA:0002934 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb [Term] id: UBERON:0019291 name: white matter of metencephalon namespace: uberon xref: FMA:83939 xref: HBA:9287 is_a: UBERON:0019258 ! white matter of hindbrain relationship: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0019292 name: white matter of pons namespace: uberon xref: FMA:83940 is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0019291 ! white matter of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0019293 name: white matter of pontine tegmentum namespace: uberon alt_id: UBERON:0025819 synonym: "pontine white matter tracts" EXACT [HBA:PoWM] synonym: "predominantly white regional part of pontine tegmentum" EXACT [BIRNLEX:1069] synonym: "substantia alba tegmenti pontis" EXACT [FMA:TA] synonym: "white matter of pontile tegmentum" EXACT [FMA:83942] synonym: "white substance of pontile tegmentum" EXACT [FMA:83942] xref: BIRNLEX:1069 xref: FMA:83942 xref: HBA:265505486 is_a: UBERON:0019292 ! white matter of pons relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0019294 name: commissure of telencephalon namespace: uberon synonym: "telencephalic commissures" EXACT [HBA:TELCom] xref: HBA:9220 is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0019295 name: caudal intralaminar nuclear group namespace: uberon synonym: "caudal group of intralaminar nuclei" EXACT [HBA:ILc] synonym: "ILc" RELATED OMO:0003000 [HBA:ILc] synonym: "posterior group of intralaminar nuclei" EXACT [DHBA:PILN] synonym: "posterior intralaminar nucleus of the thalamus" RELATED [NeuroNames:1762] synonym: "posterior intralaminar thalamic nucleus" RELATED [NeuroNames:1762] xref: DHBA:10448 xref: HBA:12921 xref: neuronames:1762 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0002733 ! intralaminar nuclear group [Term] id: UBERON:0019303 name: occipital sulcus namespace: uberon synonym: "occipital lobe sulcus" EXACT [] xref: HBA:9386 xref: NCIT:C33196 xref: SCTID:314148004 xref: UMLS:C1518530 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0019308 name: septohypothalamic nucleus namespace: uberon def: "A group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 )." [neuronames:1175] synonym: "SHy" RELATED OMO:0003000 [DHBA:SHy] xref: DHBA:13033 xref: DMBA:15761 xref: neuronames:1175 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002663 {source="DHBA"} ! septal nuclear complex [Term] id: UBERON:0019310 name: glossopharyngeal nerve root namespace: uberon synonym: "glossopharyngeal nerve root" EXACT [BIRNLEX:1533] xref: BIRNLEX:1533 xref: DHBA:12887 xref: DMBA:17747 is_a: UBERON:0006843 ! root of cranial nerve relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0019311 name: root of olfactory nerve namespace: uberon def: "The initial segment of an olfactory nerve, leaving the central nervous system." [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory nerve root" EXACT [BIRNLEX:1632] xref: BIRNLEX:1632 is_a: UBERON:0002211 ! nerve root [Term] id: UBERON:0019312 name: ventrolateral nucleus of solitary tract namespace: uberon synonym: "nucleus of the solitary tract, ventrolateral part" RELATED [BIRNLEX:2664] synonym: "ventrolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2664] synonym: "ventrolateral subnucleus of solitary tract, left" EXACT [HBA:SolVL] xref: BIRNLEX:2664 xref: DHBA:12569 xref: FMA:229583 xref: HBA:9664 xref: neuronames:747 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0019314 name: epifascicular nucleus namespace: uberon xref: DHBA:12649 xref: HBA:9551 xref: neuronames:1118 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon [Term] id: UBERON:0020358 name: accessory XI nerve nucleus namespace: uberon def: "The spinal accessory nucleus lies within the cervical spinal cord (C1-C5) in the ventral horn. The nucleus ambiguus is classically said to provide the 'cranial component' of the accessory nerve. However, the very existence of this cranial component has been recently questioned and seen as contributing exclusively to the vagus nerve. The terminology continues to be used in describing both human anatomy, and that of other animals." [Wikipedia:Spinal_accessory_nucleus] comment: See also: Wikipedia:Spinal_accessory_nucleus synonym: "accessory neural nucleus" EXACT [FMA:83965] synonym: "accessory nucleus of anterior column of spinal cord" RELATED [NeuroNames:2003] synonym: "nucleus accessorius columnae anterioris medullae spinalis" RELATED OMO:0003011 [NeuroNames:2003] synonym: "nucleus nervi accessorii" RELATED OMO:0003011 [NeuroNames:2003] synonym: "nucleus of accessory nerve" RELATED [NeuroNames:2003] synonym: "nucleus of the accessory nerve" RELATED [NeuroNames:2003] synonym: "nucleus of the spinal accessory nerve" RELATED [NeuroNames:2003] synonym: "spinal accessory nucleus" RELATED [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37067 {source="MA:th"} xref: FMA:83965 xref: MA:0001033 xref: neuronames:2003 xref: Wikipedia:Spinal_accessory_nucleus is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata [Term] id: UBERON:0022229 name: posterior amygdaloid nucleus namespace: uberon synonym: "posterior amygdalar nucleus" EXACT [ABA:PA] xref: EMAPA:35694 xref: MA:0002928 xref: MBA:780 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 {source="MA"} ! amygdala [Term] id: UBERON:0022230 name: retrohippocampal region namespace: uberon synonym: "retrohippocampal cortex" EXACT [MA:0000920] xref: EMAPA:35745 xref: MA:0000920 xref: MBA:822 xref: neuronames:2729 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation [Term] id: UBERON:0022232 name: secondary visual cortex namespace: uberon xref: EMAPA:35758 xref: MA:0000915 is_a: UBERON:0035014 {source="cjm"} ! functional part of brain is_a: UBERON:8440011 ! cortical visual area relationship: part_of UBERON:0000411 {source="cjm"} ! visual cortex relationship: part_of UBERON:0002021 {source="MA"} ! occipital lobe [Term] id: UBERON:0022234 name: medial longitudinal stria namespace: uberon synonym: "medial longitudinal stria" RELATED [NeuroNames:175] synonym: "medial longitudinal stria of Lancisi" RELATED [NeuroNames:175] synonym: "medial longitudinal stria of lancisi" EXACT [FMA:67956] synonym: "medial stripe of Lancisi" RELATED [NeuroNames:175] synonym: "medial stripe of lancisi" EXACT [FMA:67956] synonym: "medial white stria of Lancisi" RELATED [NeuroNames:175] synonym: "medial white stria of lancisi" EXACT [FMA:67956] synonym: "stria Lancisii" RELATED OMO:0003011 [NeuroNames:175] synonym: "stria longitudinalis interna" RELATED OMO:0003011 [NeuroNames:175] synonym: "stria longitudinalis medialis" RELATED OMO:0003011 [NeuroNames:175] synonym: "stria of lancisi" EXACT [FMA:67956] synonym: "taenia libera Lancisi" RELATED OMO:0003011 [NeuroNames:175] synonym: "taenia libra" RELATED OMO:0003011 [NeuroNames:175] xref: DHBA:12066 xref: FMA:67956 xref: HBA:265505202 xref: neuronames:175 is_a: UBERON:0016536 ! white matter of limbic lobe is_a: UBERON:0016555 {source="FMA"} ! stria of telencephalon relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0022235 name: peduncle of diencephalon namespace: uberon synonym: "diencephalon peduncle" EXACT [FMA:62444] xref: FMA:62444 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0007417 ! peduncle of neuraxis relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0022236 name: peduncle of thalamus namespace: uberon synonym: "thalamic peduncle" EXACT [] xref: MBA:365 xref: neuronames:1982 is_a: UBERON:0022235 ! peduncle of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022237 name: anterior thalamic peduncle namespace: uberon synonym: "anterior peduncle" EXACT [FMA:62074] synonym: "frontal peduncle" EXACT [FMA:62074] synonym: "frontal thalamic peduncle" EXACT [FMA:62074] synonym: "pedunculus rostralis thalami" EXACT OMO:0003011 [FMA:62074, FMA:TA] synonym: "rostral peduncle of thalamus" EXACT [FMA:62074] xref: DHBA:266441633 xref: FMA:62074 xref: HBA:265505274 xref: neuronames:369 is_a: UBERON:0011299 ! white matter of telencephalon is_a: UBERON:0022236 ! peduncle of thalamus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0022241 name: superior thalamic peduncle namespace: uberon synonym: "centroparietal peduncle" EXACT [FMA:62075] synonym: "centroparietal thalamic peduncle" EXACT [FMA:62075] synonym: "middle thalamic peduncle" EXACT [FMA:62075] synonym: "pedunculus thalami superior" EXACT OMO:0003011 [FMA:62075, FMA:TA] synonym: "superior peduncle" EXACT [FMA:62075] xref: FMA:62075 xref: neuronames:370 is_a: UBERON:0022236 ! peduncle of thalamus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022242 name: inferior thalamic peduncle namespace: uberon synonym: "inferior peduncle" EXACT [FMA:62076] synonym: "pedunculus inferior thalami" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "pedunculus thalami caudalis" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "pedunculus thalami inferior" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "pedunculus thalamicus inferior" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "temporal peduncle" EXACT [FMA:62076] synonym: "temporal thalamic peduncle" EXACT [FMA:62076] xref: DHBA:12059 xref: FMA:62076 xref: HBA:265505110 xref: neuronames:371 is_a: UBERON:0022236 ! peduncle of thalamus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022243 name: posterior thalamic peduncle namespace: uberon synonym: "occipital peduncle" EXACT [FMA:62077] synonym: "occipital thalamic peduncle" EXACT [FMA:62077] synonym: "pedunculus ventrocaudalis thalami" EXACT OMO:0003011 [FMA:62077, FMA:TA] synonym: "posterior peduncle" EXACT [FMA:62077] synonym: "ventrocaudal thalamic peduncle" EXACT [FMA:62077] xref: FMA:62077 xref: neuronames:372 is_a: UBERON:0022236 ! peduncle of thalamus relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022244 name: anterior orbital gyrus namespace: uberon synonym: "AOrG" RELATED OMO:0003000 [HBA:AOrG] xref: FMA:256196 xref: HBA:4053 xref: SCTID:279196000 is_a: UBERON:0007193 {source="FMA"} ! orbital gyrus [Term] id: UBERON:0022246 name: superior longitudinal fasciculus namespace: uberon def: "The superior longitudinal fasciculus (also called the superior longitudinal fascicle or SLF) is a pair of long bi-directional bundles of neurons connecting the front and the back of the cerebrum. Each association fiber bundle is lateral to the centrum ovale of a cerebral hemisphere and connects the frontal, occipital, parietal, and temporal lobes. The neurons pass from the frontal lobe through the operculum to the posterior end of the lateral sulcus where numerous neurons radiate into the occipital lobe and other neurons turn downward and forward around the putamen and radiate to anterior portions of the temporal lobe." [Wikipedia:Superior_longitudinal_fasciculus] synonym: "superior longitudinal fascicle" RELATED [Wikipedia:Superior_longitudinal_fasciculus] xref: DHBA:10592 xref: FMA:77631 xref: HBA:9281 xref: neuronames:2080 xref: SCTID:369082006 xref: Wikipedia:Superior_longitudinal_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] id: UBERON:0022247 name: forebrain ipsilateral fiber tracts namespace: uberon synonym: "FIFT" RELATED OMO:0003000 [DHBA:FIFT] xref: DHBA:10568 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0019261 {source="DHBA"} ! white matter of forebrain [Term] id: UBERON:0022248 name: cerebral nerve fasciculus namespace: uberon synonym: "cerebral fascicle" EXACT [FMA:260712] synonym: "cerebral fasciculus" EXACT [FMA:260712] synonym: "nerve fascicle of telencephalon" EXACT [] synonym: "telencephalic fascicle" EXACT [] synonym: "telencephalic nerve fascicle" EXACT [] xref: FMA:260712 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0022250 name: subcallosal fasciculus namespace: uberon synonym: "fasciculus occipitofrontalis superior" EXACT OMO:0003011 [FMA:77634, FMA:TA] synonym: "fasciculus subcallosus" EXACT OMO:0003011 [FMA:77637, FMA:TA] synonym: "subcallosal bundle" RELATED [NeuroNames:2141] synonym: "superior fronto-occipital bundle" RELATED [NeuroNames:2141] synonym: "superior fronto-occipital fasciculus" RELATED [NeuroNames:2141] synonym: "superior occipito-frontal fascicle" RELATED [NeuroNames:2141] synonym: "superior occipitofrontal fasciculus" EXACT [DHBA:12071] synonym: "superior occipitofrontal fasciculus" RELATED [NeuroNames:2141] xref: DHBA:12071 xref: FMA:77634 xref: FMA:77637 xref: HBA:265505338 xref: neuronames:2141 xref: SCTID:369086009 is_a: UBERON:0034754 ! occipitofrontal fasciculus property_value: RO:0002174 NCBITaxon:9606 {source="WP"} [Term] id: UBERON:0022252 name: precentral sulcus namespace: uberon def: "The precentral sulcus lies parallel to, and in front of, the central sulcus. (A sulcus is one of the prominent grooves on the surface of the human brain. ) The precentral sulcus divides the inferior, middle, and superior frontal gyri from the precentral gyrus. In the majority of brains, the precentral sulcus is divided into two parts: the inferior precentral sulcus and the superior precentral sulcus. However, the precentral sulcus may also be divided into three parts or form one continuous sulcus." [Wikipedia:Precentral_sulcus] xref: DHBA:10628 xref: FMA:83800 xref: HBA:9355 xref: NCIT:C33394 xref: SCTID:279341002 xref: Wikipedia:Precentral_sulcus is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0014639 ! frontal sulcus relationship: part_of UBERON:0014639 {source="HBA"} ! frontal sulcus [Term] id: UBERON:0022254 name: ventral thalamic fasciculus namespace: uberon def: "The thalamic fasciculus is a component of the subthalamus. It is sometimes considered synonymous with 'field H1 of Forel'. Nerve fibres forming a composite bundle containing cerebellothalamic (crossed) and pallidothalamic (uncrossed) fibres that is insinuated between the thalamus and zona incerta. The thalamic fasciculus consists of the joint fibers of the ansa lenticularis and the lenticular fasciculus, coming from different portions of the medial globus pallidus, before they jointly enter the ventral lateral nucleus of the thalamus." [Wikipedia:Thalamic_fasciculus] synonym: "area subthalamica tegmentalis, pars dorsomedialis" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis H1" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis, pars dorsalis" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis, pars dorsalis (Forel)" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "campus foreli (pars dorsalis)" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "fasciculus thalamicus" EXACT [FMA:TA] synonym: "fasciculus thalamicus [h1]" EXACT [FMA:TA] synonym: "fasciculus thalamicus hypothalami" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "field H1" EXACT [FMA:62065] synonym: "forel's field h1" EXACT [FMA:62065] synonym: "forelli campus I" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "h1 bundle of Forel" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "h1 field of Forel" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "tegmental area h1" EXACT [FMA:62065] synonym: "thalamic fasciculus" EXACT [FMA:62065] synonym: "thalamic fasciculus [h1]" EXACT [FMA:62065] xref: DHBA:10593 xref: FMA:62065 xref: HBA:265505374 xref: neuronames:439 xref: SCTID:369185006 xref: Wikipedia:Thalamic_fasciculus is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001900 ! ventral thalamus relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0022256 name: subthalamic fasciculus namespace: uberon def: "The subthalamic fasciculus is a tract which connects the subthalamic nucleus and the globus pallidus. It is a bidirectional connection between the GP and the subthalamic nucleus, including (1) fibers running from the GPe to the subthalamic nucleus, and (2) fibers running from the STN back to the GP." [Wikipedia:Subthalamic_fasciculus] synonym: "fasciculus subthalamicus" RELATED OMO:0003011 [NeuroNames:2280] synonym: "subthalamic fascicle" RELATED [NeuroNames:2280] synonym: "subthalamic fasciculus" RELATED [NeuroNames:2280] xref: DHBA:12089 xref: FMA:77525 xref: HBA:265505350 xref: MBA:317 xref: neuronames:2280 xref: SCTID:369187003 xref: Wikipedia:Subthalamic_fasciculus is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0022258 name: endolemniscal nucleus namespace: uberon synonym: "EL" RELATED OMO:0003000 [HBA:EL] xref: DHBA:12648 xref: FMA:77099 xref: HBA:9548 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon [Term] id: UBERON:0022259 name: white matter radiation namespace: uberon synonym: "neuraxis radiation" EXACT [FMA:83859] synonym: "radiation of neuraxis" EXACT [FMA:83859] xref: FMA:83859 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0022260 name: radiation of cerebral hemisphere namespace: uberon synonym: "cerebral hemisphere radiation" EXACT [FMA:61940] xref: FMA:61940 is_a: UBERON:0002437 ! cerebral hemisphere white matter is_a: UBERON:0022259 ! white matter radiation relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter [Term] id: UBERON:0022262 name: auditory radiation namespace: uberon def: "The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness." [Wikipedia:Acoustic_radiation] synonym: "acoustic radiation" EXACT [FMA:62413] synonym: "auditory radiation" RELATED [Wikipedia:Acoustic_radiation] synonym: "auditory radiations" RELATED [Wikipedia:Acoustic_radiation] synonym: "geniculotemporal radiation" EXACT [FMA:62413] synonym: "geniculotemporal tract" EXACT [FMA:62413] synonym: "radiatio acustica" EXACT OMO:0003011 [FMA:TA] xref: DHBA:266441583 xref: FMA:62413 xref: HBA:265504974 xref: neuronames:2084 xref: Wikipedia:Acoustic_radiation is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0022264 name: optic radiation namespace: uberon def: "The optic radiation (also known as the geniculo-calcarine tract or as the geniculostriate pathway) is a collection of axons from relay neurons in the lateral geniculate nucleus of the thalamus carrying visual information to the visual cortex (also called striate cortex) along the calcarine fissure. There is one such tract on each side of the brain." [Wikipedia:Optic_radiation] subset: human_reference_atlas synonym: "archambault%27s loop" RELATED [Wikipedia:Optic_radiation] synonym: "genicula-celcarine tract" RELATED [Wikipedia:Optic_radiation] synonym: "geniculo-calcarine tract" RELATED [Wikipedia:Optic_radiation] synonym: "geniculocalcarine tract" RELATED [Wikipedia:Optic_radiation] synonym: "geniculostriate pathway" RELATED [Wikipedia:Optic_radiation] synonym: "Gratiolet's radiation" EXACT [FMA:61941] synonym: "meyer's loop" RELATED [Wikipedia:Optic_radiation] synonym: "optic radiations" RELATED [Wikipedia:Optic_radiation] synonym: "radiatio optica" RELATED [Wikipedia:Optic_radiation] synonym: "railroad nystagmus" RELATED [Wikipedia:Optic_radiation] xref: DHBA:266441621 xref: FMA:61941 xref: HBA:9311 xref: neuronames:1440 xref: SCTID:280953008 xref: Wikipedia:Optic_radiation is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0022268 name: planum temporale namespace: uberon def: "The planum temporale is the cortical area just posterior to the auditory cortex within the Sylvian fissure. It is a triangular region which forms the heart of Wernicke's area, one of the most important functional areas for language. The planum temporale shows a significant asymmetry. In 65% of all individuals the left planum temporale appears to be more developed, while the right planum temporale is more developed in only 10%. In some peoplebs brains, the planum temporale is more than five times larger on the left than on the right, making it the most asymmetrical structure in the brain. This greater size of the left planum temporale compared with the right is already present in the foetus, where it can be observed starting from the 31st week of gestation. This observation strengthens the hypothesis of a genetic predisposition for brain asymmetry." [http://neuro.imm.dtu.dk/wiki/Planum_temporale, Wikipedia:Planum_temporale] subset: human_reference_atlas synonym: "PLT" RELATED OMO:0003000 [HBA:PLT] xref: DHBA:12145 xref: HBA:4171 xref: neuronames:2333 xref: Wikipedia:Planum_temporale is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001871 {source="HBA"} ! temporal lobe property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022271 name: corticopontine fibers namespace: uberon def: "Corticopontine fibers, commonly referred to as corticobulbar fibers, are projections from the cerebral cortex to the pontine nuclei. Depending upon the lobe of origin, they can be classified as frontopontine fibers, parietopontine fibers, temporopontine fibers and occipitopontine fibers. They are motor fibers that stretch from the precentral gyrus (motor strip) to the nuclei of cranial nerves V (trigenimal), VII (facial) and XII (hypoglossal). These fibers run alongside the corticospinal fibers." [Wikipedia:Corticopontine_fibers] synonym: "cortico-pontine fibers" EXACT [HBA:cpn] synonym: "cortico-pontine fibers, pontine part" EXACT [DHBA:cpn] synonym: "corticopontine" RELATED [Wikipedia:Corticopontine_fibers] synonym: "corticopontine fibers" EXACT [FMA:75190] synonym: "corticopontine fibers of pons" EXACT [] synonym: "corticopontine fibers set" EXACT [FMA:75190] synonym: "corticopontine fibres" EXACT [FMA:75190] synonym: "corticopontine fibres" RELATED [Wikipedia:Corticopontine_fibers] synonym: "fibrae corticopontinae" EXACT [FMA:TA] synonym: "tractus corticopontinus" EXACT OMO:0003011 [FMA:TA] xref: DHBA:266441721 xref: FMA:75190 xref: HBA:265505490 xref: neuronames:1322 xref: SCTID:91366009 xref: Wikipedia:Corticopontine_fibers is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0019293 {source="HBA"} ! white matter of pontine tegmentum [Term] id: UBERON:0022272 name: corticobulbar tract namespace: uberon def: "The corticobulbar (or corticonuclear) tract is a white matter pathway connecting the cerebral cortex to the brainstem. The term 'bulbar' refers to the brainstem, as 'bulb' was a historical term meaning the area currently called the brainstem. The 'bulb' is an archaic term for the medulla oblongata. In clinical usage, it includes the pons as well." [Wikipedia:Corticobulbar_tract] synonym: "bulbar" RELATED [Wikipedia:Corticobulbar_tract] synonym: "cbu-h" RELATED OMO:0003000 [DHBA:cbu-h] synonym: "cortico-bulbar tract" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar axons" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar fiber" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar fibre" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticobulbar pathway" RELATED [Wikipedia:Corticobulbar_tract] synonym: "corticonuclear tract" RELATED [Wikipedia:Corticobulbar_tract] xref: DHBA:12774 xref: FMA:275544 xref: HBA:265505058 xref: MBA:994 xref: neuronames:1319 xref: Wikipedia:Corticobulbar_tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0036224 ! corticobulbar and corticospinal tracts [Term] id: UBERON:0022278 name: nucleus of pudendal nerve namespace: uberon def: "A nucleus in the ventral part of the anterior horn of the sacral region of the spinal cord that is the origin of the pudendal nerve." [Wikipedia:Onuf%27s_nucleus, Wikipedia:Pudendal_nerve#Nucleus] synonym: "nucleus of Onuf" EXACT [FMA:257031] synonym: "Onuf's nucleus" EXACT [FMA:77024] synonym: "pudendal neural nucleus" EXACT [FMA:77024] xref: FMA:257031 xref: FMA:77024 xref: neuronames:2701 xref: Wikipedia:Onuf%27s_nucleus is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0005853 ! sacral spinal cord ventral column property_value: UBPROP:0000009 "involved in the maintenance of micturition and defecatory continence, as well as muscular contraction during orgasm." xsd:string property_value: UBPROP:0000010 "The neurons in Onuf's nucleus are motoneurons, and like most motoneurons they are characterized by their mulipolarity and large Nissl bodies" xsd:string [Term] id: UBERON:0022283 name: pineal recess of third ventricle namespace: uberon def: "The diverticulum of the thin roof of the dorsocaudal third ventricle that projects into the stalk of the pineal gland." [ISBN:068340007X] synonym: "pineal recess" EXACT [FMA:78458] synonym: "pineal recess of 3V" EXACT [DHBA:266441661] synonym: "recessus epiphysis" RELATED OMO:0003011 [NeuroNames:456] synonym: "recessus pinealis" EXACT OMO:0003011 [FMA:TA] xref: DHBA:266441661 xref: EMAPA:18542 xref: FMA:78458 xref: neuronames:456 xref: SCTID:280070003 xref: SCTID:369281005 xref: Wikipedia:Pineal_recess relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0022296 name: inferior palpebral branch of infra-orbital nerve namespace: uberon def: "A nerve that innervates a lower eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] synonym: "rami palpebrales inferiores nervi infraorbitalis" EXACT OMO:0003011 [Wikipedia:Inferior_palpebral_nerve] xref: FMA:52983 xref: Wikipedia:Inferior_palpebral_nerve is_a: UBERON:0022297 ! palpebral branch of infra-orbital nerve is_a: UBERON:0022298 ! lower eyelid nerve [Term] id: UBERON:0022297 name: palpebral branch of infra-orbital nerve namespace: uberon def: "A nerve that innervates an eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] synonym: "palpebral branch of maxillary nerve" EXACT [] xref: SCTID:280236007 is_a: UBERON:0003437 ! eyelid nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0018408 ! infra-orbital nerve [Term] id: UBERON:0022298 name: lower eyelid nerve namespace: uberon def: "A nerve that innervates a lower eyelid." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003437 ! eyelid nerve [Term] id: UBERON:0022299 name: upper eyelid nerve namespace: uberon def: "A nerve that innervates an upper eyelid." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003437 ! eyelid nerve [Term] id: UBERON:0022300 name: nasociliary nerve namespace: uberon def: "A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva." [http://medical-dictionary.thefreedictionary.com/nasociliary+nerve] subset: human_reference_atlas synonym: "nasal nerve" EXACT [BTO:0001452] synonym: "nasociliary" RELATED [Wikipedia:Nasociliary_nerve] synonym: "nasociliary nerve" RELATED [BTO:0001452] synonym: "nervus nasociliaris" RELATED [BTO:0001452] xref: BTO:0001452 xref: FMA:52668 xref: NCIT:C33159 xref: SCTID:280220005 xref: Wikipedia:Nasociliary_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000942 ! frontal nerve (branch of ophthalmic) property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0022301 name: long ciliary nerve namespace: uberon def: "A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] subset: human_reference_atlas synonym: "long ciliary nerve" RELATED [Wikipedia:Long_ciliary_nerves] synonym: "nervi ciliares longi" RELATED OMO:0003011 [Wikipedia:Long_ciliary_nerves] xref: FMA:52691 xref: SCTID:280228003 xref: Wikipedia:Long_ciliary_nerves is_a: UBERON:0003438 ! iris nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0022300 ! nasociliary nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0022302 name: short ciliary nerve namespace: uberon def: "A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] subset: human_reference_atlas synonym: "lower branch of ciliary ganglion" EXACT [FMA:7041] synonym: "nervi ciliares breves" RELATED OMO:0003011 [Wikipedia:Short_ciliary_nerves] synonym: "nervi ciliares brevis" RELATED OMO:0003011 [] synonym: "short ciliary nerve" RELATED [Wikipedia:Short_ciliary_nerves] xref: FMA:7041 xref: SCTID:417598000 xref: Wikipedia:Short_ciliary_nerves is_a: UBERON:0003438 ! iris nerve is_a: UBERON:0004293 ! parasympathetic nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0002058 ! main ciliary ganglion property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000010 "Contains preganglionic parasympathetic axons." xsd:string [Term] id: UBERON:0022303 name: nervous system cell part layer namespace: uberon def: "Single layer of a laminar structure, identified by different density, arrangement or size of cells and processes arranged in flattened layers or lamina[CUMBO]." [NLX:149357] subset: cumbo synonym: "lamina" BROAD [CUMBO:CUMBO] synonym: "layer" BROAD [CUMBO:CUMBO] xref: NLX:149357 relationship: part_of UBERON:0001016 ! nervous system property_value: IAO:0000116 "this is currently used to group some cellular layers that may not strictly conform to the CARO definition of cell-part layer. Consider genericisizing and introducing subtypes for cellular layer, fibrous layer and cell soma layer" xsd:string [Term] id: UBERON:0022314 name: superior colliculus stratum zonale namespace: uberon def: "Most superficial layer of the superior colliculus consisting primarily of thin fibers derived primarily from the occipital cortex (Brodal, Neurological Anatomy, 2nd 3d, 1981, pg. 544)." [NLX:144108] subset: defined_by_cytoarchitecture synonym: "stratum zonale" RELATED [NLX:144108] synonym: "zonal layer of superior colliculus" RELATED [NLX:144108] xref: NLX:144108 is_a: UBERON:0006783 ! layer of superior colliculus is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0001945 {source="nlx"} ! superior colliculus [Term] id: UBERON:0022315 name: primary motor cortex layer 5 namespace: uberon synonym: "primary motor cortex lamina V" RELATED [NLX:144263] synonym: "primary motor cortex layer V" RELATED [NLX:144263] xref: NLX:144263 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0001384 {source="nlx"} ! primary motor cortex relationship: part_of UBERON:0005394 {source="nlx"} ! cortical layer V property_value: UBPROP:0000013 "Note that in some lamination schemes, more particularly so in primates, this layer is referred to as layer IV thus resulting in some confusion when compared to the present scheme where the lamina dissecans is referred to layer IV[DOI:10.1155/2008/381243]" xsd:string [Term] id: UBERON:0022316 name: primary motor cortex layer 6 namespace: uberon synonym: "primary motor cortex lamina 6" RELATED [NLX:144264] synonym: "primary motor cortex lamina VI" RELATED [NLX:144264] synonym: "primary motor cortex layer VI" RELATED [NLX:144264] xref: NLX:144264 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0001384 {source="nlx"} ! primary motor cortex relationship: part_of UBERON:0005395 {source="nlx"} ! cortical layer VI [Term] id: UBERON:0022317 name: olfactory cortex layer 1 namespace: uberon def: "Surface layer of the olfactory cortex that contains dendrites, fiber systems and a small number of neurons. It has been divided into a superficial part and a deep part." [NLX:152609] synonym: "layer 1 of olfactory cortex" RELATED [NLX:152609] synonym: "olfactory cortex plexiform layer" RELATED [NLX:152609] xref: NLX:152609 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex [Term] id: UBERON:0022318 name: olfactory cortex layer 2 namespace: uberon def: "Middle layer of olfactory cortex lying deep to layer 1 and superficial to layer 3, characterized by a compact layer of cell bodies. It can be divided into a superficial part and a deep part." [NLX:152610] synonym: "layer 2 of olfactory cortex" RELATED [NLX:152610] xref: NLX:152610 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex [Term] id: UBERON:0022319 name: lateral geniculate nucleus parvocellular layer namespace: uberon def: "Layer of the lateral geniculate nucleus characterized by small cells (adapted from Wikipedia: https://en.wikipedia.org/wiki/Lateral_geniculate_nucleus)." [NLX:152619] synonym: "LGN P-cell layer" EXACT [NLX:152619] synonym: "parvocellular layer of lateral geniculate nucleus" RELATED [NLX:152619] xref: NLX:152619 is_a: UBERON:0013605 ! layer of lateral geniculate body is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0001926 {source="cjm"} ! lateral geniculate body [Term] id: UBERON:0022320 name: dorsal cochlear nucleus pyramidal cell layer namespace: uberon xref: NLX:153848 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002829 ! dorsal cochlear nucleus [Term] id: UBERON:0022323 name: entorhinal cortex layer 4 namespace: uberon def: "Layer of entorhinal cortex lying superficial to layer 5 and deep to layer 3, that is relatively acellular. (Paxinos, The rat nervous system, Academic Press, 1995, pg 473-474)." [NLX:39987] comment: This layer is better developed in the medial entorhinal cortex although species differences are apparent[DOI:10.1155/2008/381243] synonym: "entorhinal cortex layer IV" RELATED [NLX:39987] synonym: "lamina dessicans" RELATED [DOI:10.1155/2008/381243] synonym: "lamina dessicans of entorhinal cortex" RELATED [DOI:10.1155/2008/381243, NLX:39987] synonym: "layer 4 of entorhinal cortex" RELATED [NLX:39987] xref: NLX:39987 xref: NLXANAT:1005008 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex property_value: UBPROP:0000012 "the two NIFSTD classes appear to refer to the same structure[DOI:10.1155/2008/381243]" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0022325 name: entorhinal cortex layer 5 namespace: uberon def: "Layer of entorhinal cortex lying superficial to layer 6 and deep to layer 4 characterized by large pyramidal neurons that are darkly stained in Nissl preparations (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:58] subset: defined_by_cytoarchitecture synonym: "entorhinal cortex layer V" EXACT [DOI:10.1155/2008/381243] xref: NLX:58 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022326 name: molecular layer of dorsal cochlear nucleus namespace: uberon synonym: "dorsal cochlear nucleus molecular layer" RELATED [NLX:89] synonym: "MoC" RELATED OMO:0003000 [] xref: NLX:89 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0002829 {source="nlx"} ! dorsal cochlear nucleus [Term] id: UBERON:0022327 name: entorhinal cortex layer 3 namespace: uberon alt_id: UBERON:0032288 def: "Layer of the entorhinal cortex lying superficial to layer 4and deep to layer 2. It is characterized by cells of various sizes and shapes with a predominance of pyramidal cells (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:93650] subset: defined_by_cytoarchitecture synonym: "entorhinal cortex layer III" RELATED [NLX:93650] synonym: "entorhinal cortex, pyramidal layer" EXACT [NLXANAT:20090702] synonym: "layer 3 of entorhinal cortex" RELATED [NLX:93650] synonym: "pyramidal layer of entorhinal cortex" EXACT [NLXANAT:20090702] synonym: "pyramidal layer of entorhinal cortex" RELATED [DOI:10.1155/2008/381243] xref: NLX:93650 xref: NLXANAT:20090702 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022329 name: entorhinal cortex layer 6 namespace: uberon def: "Layer of entorhinal cortex lying superficial to the cerebral white matter and deep to layer 5 characterized by cells of various shapes and sizes (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:98] comment: This layer is delineated by the white matter, multiple layers can be distinguished, more in particular in primates[DOI:10.1155/2008/381243] subset: defined_by_cytoarchitecture synonym: "entorhinal cortex layer VI" EXACT [DOI:10.1155/2008/381243, NLX:98] synonym: "layer 6 region of entorhinal cortex" RELATED [NLX:98] xref: NLX:98 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022336 name: entorhinal cortex layer 1 namespace: uberon def: "Layer of the entorhinal cortex that is most superficial, continuous with layer 1 of adjacent neocortex and the molecular layer of the subiculum, lying deep to the pial layer and superficial to layer 2. It is relatively acellular consisting mostly of fibers running transversely relative to the cortical surface (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090820] subset: defined_by_cytoarchitecture synonym: "EC layer 1" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer I" RELATED [NLXANAT:090820] synonym: "entorhinal cortex molecular layer" RELATED [NLXANAT:090820] synonym: "layer I of entorhinal cortex" RELATED [NLXANAT:090820] synonym: "molecular layer of entorhinal cortex" EXACT [DOI:10.1155/2008/381243, NLXANAT:090820, NLXANAT:20090701] synonym: "superficial plexiform layer of entorhinal cortex" EXACT [DOI:10.1155/2008/381243] xref: NLXANAT:090820 xref: NLXANAT:20090701 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex property_value: UBPROP:0000012 "the two NIFSTD classes appear to refer to the same structure[DOI:10.1155/2008/381243]" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0022337 name: entorhinal cortex layer 2 namespace: uberon def: "Layer of the entorhinal cortex lying superficial to layer 3 and deep to layer 1. It is characterized by medium-to large sized stellate cells that are grouped into prominent clusters, particularly in the rostral entorhinal cortex (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090821] synonym: "EC layer 2" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer II" RELATED [NLXANAT:090821] synonym: "layer 2 of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "layer II of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "outermost cell layer of entorhinal cortex" RELATED [DOI:10.1155/2008/381243] xref: NLXANAT:090821 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022340 name: piriform cortex layer 2a namespace: uberon def: "Superficial region of layer 2 of the piriform cortex characterized by a less dense packing of cells and a concentration of semilunar cell bodies." [NLXANAT:091007] subset: defined_by_cytoarchitecture synonym: "layer 2a of piriform cortex" RELATED [NLXANAT:091007] synonym: "layer IIa of piriform cortex" RELATED [NLXANAT:091007] synonym: "piriform cortex layer IIa" RELATED [NLXANAT:091007] xref: NLXANAT:091007 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0014280 {source="nlx"} ! piriform cortex layer 2 [Term] id: UBERON:0022341 name: piriform cortex layer 2b namespace: uberon def: "Deeper of two subdivisions of piriform layer 2 characterized by more densely packed cell bodies dominated by pyramidal cell bodies." [NLXANAT:091008] subset: defined_by_cytoarchitecture xref: NLXANAT:091008 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0014280 {source="nlx"} ! piriform cortex layer 2 [Term] id: UBERON:0022346 name: dentate gyrus molecular layer middle namespace: uberon synonym: "DG middle stratum moleculare" RELATED [NLXANAT:1008003] synonym: "middle layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008003] xref: FMA:277810 xref: NLXANAT:1008003 is_a: UBERON:0002304 ! layer of dentate gyrus is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular layer [Term] id: UBERON:0022347 name: dentate gyrus molecular layer inner namespace: uberon def: "Inner third of the dentate gyrus." [NLXANAT:1008004] synonym: "DG inner stratum moleculare" RELATED [NLXANAT:1008004] synonym: "inner layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008004] xref: FMA:277812 xref: NLXANAT:1008004 is_a: UBERON:0002304 ! layer of dentate gyrus is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular layer [Term] id: UBERON:0022348 name: dentate gyrus granule cell layer inner blade namespace: uberon synonym: "enclosed blade of stratum granulare" RELATED [NLXANAT:1008005] synonym: "extrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008005] synonym: "extrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008005] synonym: "inner blade of dentate gyrus granule cell layer" RELATED [NLXANAT:1008005] synonym: "inner blade of stratum granulare" RELATED [NLXANAT:1008005] xref: NLXANAT:1008005 is_a: UBERON:0002304 ! layer of dentate gyrus is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell layer [Term] id: UBERON:0022349 name: dentate gyrus granule cell layer outer blade namespace: uberon synonym: "exposed blade of stratum granulare" RELATED [NLXANAT:1008006] synonym: "infrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008006] synonym: "infrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008006] synonym: "outer blade of dentate gyrus granule cell layer" RELATED [NLXANAT:1008006] synonym: "outer blade of stratum granulare" RELATED [NLXANAT:1008006] xref: NLXANAT:1008006 is_a: UBERON:0002304 ! layer of dentate gyrus is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell layer [Term] id: UBERON:0022352 name: medial orbital frontal cortex namespace: uberon def: "Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the u2018inflatedu2019 surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine)." [BIRNLEX:1249] synonym: "frontal medial cortex" BROAD [http://orcid.org/0000-0001-6755-0259] synonym: "medial orbitofrontal cortex" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:1249 xref: FMA:273320 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex [Term] id: UBERON:0022353 name: posterior cingulate cortex namespace: uberon def: "Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine)." [BIRNLEX:950] synonym: "cingulate gyrus, posterior division" RELATED [http://orcid.org/0000-0001-6755-0259] synonym: "posterior cingular cortex" RELATED [Wikipedia:Posterior_cingulate] synonym: "posterior cingulate" BROAD [Wikipedia:Posterior_cingulate] xref: BIRNLEX:950 xref: BTO:0004250 xref: EFO:0002471 xref: FMA:271593 xref: Wikipedia:Posterior_cingulate is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0003027 {source="NIFSTD"} ! cingulate cortex property_value: IAO:0000116 "check relationship to gyrus. See https://github.com/obophenotype/uberon/issues/626" xsd:string [Term] id: UBERON:0022364 name: occipital fusiform gyrus namespace: uberon subset: human_reference_atlas synonym: "FuGo" RELATED OMO:0003000 [DHBA:12152] synonym: "occipital fusiform gyrus (OF)" EXACT [FMA:71033] synonym: "occipitotemporal (fusiform) gyrus, occipital part" EXACT [DHBA:12152] xref: DHBA:12152 xref: FMA:71033 xref: http://neuro.imm.dtu.dk/wiki/Occipital_fusiform_gyrus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022367 name: inferior lateral occipital cortex namespace: uberon synonym: "lateral occipital cortex, inferior division" EXACT [https://github.com/obophenotype/uberon/issues/630] synonym: "lateral occipital cortex, inferior division (OLI)" EXACT [FMA:71034] xref: FMA:71034 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0006114 ! lateral occipital cortex property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022368 name: superior lateral occipital cortex namespace: uberon synonym: "lateral occipital cortex, superior division" EXACT [https://github.com/obophenotype/uberon/issues/630] xref: FMA:71035 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0006114 ! lateral occipital cortex property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022383 name: anterior parahippocampal gyrus namespace: uberon def: "The part of the parahippocampal gyrus that includes the perirhinal and entorhinal cortices." [Wikipedia:Parahippocampal_gyrus] subset: human_reference_atlas synonym: "APH" RELATED OMO:0003000 [DHBA:12163] synonym: "parahippocampal gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] xref: DHBA:12163 xref: FMA:71039 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002973 ! parahippocampal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022394 name: posterior parahippocampal white matter namespace: uberon synonym: "posterior parahippocampal white matter" RELATED [NeuroNames:827] synonym: "substantia medullaris parahippocampalis posterior" RELATED OMO:0003011 [NeuroNames:827] xref: neuronames:827 is_a: UBERON:0016534 ! white matter of temporal lobe is_a: UBERON:0016536 ! white matter of limbic lobe relationship: part_of UBERON:0002657 ! posterior parahippocampal gyrus [Term] id: UBERON:0022395 name: temporal fusiform gyrus namespace: uberon synonym: "FuGt" RELATED OMO:0003000 [DHBA:12143] synonym: "occipitotemporal (fusiform) gyrus, temporal part" EXACT [DHBA:12143] xref: DHBA:12143 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022396 name: anterior temporal fusiform gyrus namespace: uberon synonym: "occipitotemporal (fusiform) gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022397 name: posterior temporal fusiform gyrus namespace: uberon synonym: "occipitotemporal (fusiform) gyrus, posterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus property_value: UBPROP:0000201 Harvard-Oxford:Atlas [Term] id: UBERON:0022398 name: paracingulate gyrus namespace: uberon subset: human_reference_atlas synonym: "PaCG" RELATED OMO:0003000 [DHBA:146034872] synonym: "paracingulate gyrus (PAC)" EXACT [FMA:71037] xref: DHBA:146034872 xref: FMA:71037 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0022420 name: temporal part of superior longitudinal fasciculus namespace: uberon synonym: "superior longitudinal fasciculus, temporal division" EXACT [] is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0022246 ! superior longitudinal fasciculus [Term] id: UBERON:0022421 name: pontocerebellar tract namespace: uberon def: "The second order neuron fibers of the corticopontocerebellar tracts that cross to the other side of the pons and run within the middle cerebellar peduncles, from the pons to the contralateral cerebellum." [Wikipedia:Pontocerebellar_fibers] synonym: "fibrae pontocerebellaris" EXACT OMO:0003011 [Wikipedia:Pontocerebellar_fibers] synonym: "pncb" RELATED OMO:0003000 [DHBA:12769] synonym: "pontine crossing tract" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pontocerebellar fibers" EXACT [NeuroNames:1345] synonym: "tractus pontocerebellaris" EXACT OMO:0003011 [NeuroNames:1345] xref: DHBA:12769 xref: HBA:265505470 xref: neuronames:1345 xref: SCTID:360457005 xref: Wikipedia:Pontocerebellar_fibers is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002152 {source="DHBA"} ! middle cerebellar peduncle relationship: part_of UBERON:0002317 {source="HBA"} ! white matter of cerebellum [Term] id: UBERON:0022423 name: sagulum nucleus namespace: uberon def: "A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus." [NLX:64080] synonym: "nucleus saguli" EXACT OMO:0003011 [FMA:77492, FMA:TA] synonym: "nucleus sagulum" RELATED OMO:0003011 [NeuroNames:1308, NLX:64080] synonym: "Sag" RELATED OMO:0003000 [HBA:9486] synonym: "sagular nucleus" RELATED [] synonym: "sagulum" RELATED OMO:0003011 [NeuroNames:1308] xref: DHBA:12313 xref: FMA:77492 xref: HBA:9486 xref: neuronames:1308 xref: NLX:64080 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0011214 ! nucleus of midbrain tectum relationship: part_of UBERON:0002314 {source="HBA"} ! midbrain tectum [Term] id: UBERON:0022424 name: supragenual nucleus of pontine tegmentum namespace: uberon def: "A group of neurons embedded in the pontine central gray of the pontine tegmentum. Located dorsal to the internal genu of the facial nerve, it is found in the human ( Paxinos-2012 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ), and the mouse ( Franklin-2008 ). Functionally it is part of the dorsal pontine gray of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1981] synonym: "SGe" RELATED OMO:0003000 [DHBA:12662] synonym: "supragenual nucleus" EXACT [NeuroNames:1981] xref: DHBA:12662 xref: DMBA:17190 xref: neuronames:1981 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 {source="DHBA", source="Neuronames-def"} ! pontine tegmentum [Term] id: UBERON:0022425 name: anterior corona radiata namespace: uberon synonym: "anterior portion of corona radiata" EXACT [DHBA:15541] synonym: "cor-a" RELATED OMO:0003000 [DHBA:15541] xref: DHBA:15541 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis property_value: UBPROP:0000201 http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html [Term] id: UBERON:0022426 name: superior corona radiata namespace: uberon synonym: "cor-s" RELATED OMO:0003000 [DHBA:15542] synonym: "superior portion of corona radiata" EXACT [DHBA:15542] xref: DHBA:15542 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis property_value: UBPROP:0000201 http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html [Term] id: UBERON:0022427 name: posterior corona radiata namespace: uberon synonym: "cor-p" RELATED OMO:0003000 [DHBA:15543] synonym: "posterior portion of corona radiata" EXACT [DHBA:15543] xref: DHBA:15543 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis property_value: UBPROP:0000201 http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html [Term] id: UBERON:0022428 name: cingulate cortex cingulum namespace: uberon synonym: "cb-cx" RELATED OMO:0003000 [DHBA:15539] synonym: "cingulum (cingulate gyrus)" EXACT [] synonym: "cingulum bundle in cingulate cortex" EXACT [DHBA:15539] synonym: "cingulum bundle in cingulate gyrus" EXACT [] xref: DHBA:15539 is_a: UBERON:0003961 ! cingulum of brain relationship: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0022429 name: temporal cortex cingulum namespace: uberon synonym: "cb-tx" RELATED OMO:0003000 [DHBA:15540] synonym: "cingulum (temporal gyrus)" EXACT [] synonym: "cingulum bundle in temporal cortex" EXACT [DHBA:15540] synonym: "cingulum bundle in temporal gyrus" EXACT [] xref: DHBA:15540 is_a: UBERON:0003961 ! cingulum of brain relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0022430 name: hippocampus cortex cingulum namespace: uberon synonym: "cingulum (Ammon's horn)" EXACT [] synonym: "cingulum (hippocampus)" EXACT [] synonym: "cingulum bundle in hippocampus" EXACT [] is_a: UBERON:0003961 ! cingulum of brain relationship: part_of UBERON:0001954 ! Ammon's horn [Term] id: UBERON:0022434 name: primary superior olive namespace: uberon def: "Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus." [BIRNLEX:900] synonym: "superior olive" BROAD INCONSISTENT [BIRNLEX:900] xref: BAMS:SOl xref: BIRNLEX:900 xref: DHBA:12468 xref: HBA:9182 xref: neuronames:570 xref: UMLS:C0228444 is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex property_value: UBPROP:0000012 "Wikipedia includes Medial nucleus of the trapezoid body. Wikipedia:Superior_olivary_complex#Primary_nuclei" xsd:string property_value: UBPROP:0000013 "many sources refer to this simply as the 'superior olive' or the 'superior olivary nucleus'. However, this is confusing as superior olive is sometimes used to denote the full SOC, which includes periolvary nuclei[https://github.com/obophenotype/uberon/issues/631]" xsd:string [Term] id: UBERON:0022437 name: dorsal periolivary nucleus namespace: uberon synonym: "DPeO" RELATED OMO:0003000 [DMBA:17260] synonym: "DPO" RELATED OMO:0003000 [] synonym: "nuclei periolivares" BROAD OMO:0003011 [FMA:TA] synonym: "peri-olivary nuclei" BROAD [FMA:72475] xref: DHBA:15561 xref: DMBA:17260 xref: FMA:72475 xref: Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29 is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0002128 {source="FMA"} ! superior olivary complex relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus [Term] id: UBERON:0022438 name: rostral anterior cingulate cortex namespace: uberon def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine)." [BIRNLEX:975] synonym: "rostral anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:975] xref: BIRNLEX:975 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0009835 {source="NIFSTD"} ! anterior cingulate cortex [Term] id: UBERON:0022453 name: olfactory entorhinal cortex namespace: uberon def: "A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info." [BIRNLEX:2705] synonym: "EOl" RELATED OMO:0003000 [BIRNLEX:2705] xref: BIRNLEX:2705 xref: neuronames:2274 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002728 {source="NIFSTD"} ! entorhinal cortex relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex [Term] id: UBERON:0022469 name: primary olfactory cortex namespace: uberon def: "A group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area." [BIRNLEX:2706] synonym: "primary olfactory areas" RELATED [BIRNLEX:2706] xref: BIRNLEX:2706 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex [Term] id: UBERON:0022534 name: pericalcarine cortex namespace: uberon def: "Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1059] synonym: "pericalcarine cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1059] xref: BIRNLEX:1059 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe [Term] id: UBERON:0022649 name: habenulo-interpeduncular tract of diencephalon namespace: uberon synonym: "habenulo-interpeduncular tract of diencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:1176] xref: BIRNLEX:1176 xref: neuronames:461 xref: UMLS:C0228391 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0002138 ! habenulo-interpeduncular tract relationship: part_of UBERON:0003931 {source="ZFA"} ! diencephalic white matter [Term] id: UBERON:0022695 name: orbital gyri complex namespace: uberon synonym: "orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1223] synonym: "orgital_gyri" RELATED [BIRNLEX:1223] xref: BIRNLEX:1223 xref: UMLS:C0152301 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] id: UBERON:0022716 name: lateral orbital frontal cortex namespace: uberon def: "Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1244] synonym: "lateral orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1244] xref: BIRNLEX:1244 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex [Term] id: UBERON:0022730 name: transverse frontopolar gyri complex namespace: uberon synonym: "transverse frontopolar gyri" RELATED [BIRNLEX:1258] synonym: "transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1258] xref: BIRNLEX:1258 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] id: UBERON:0022776 name: composite part spanning multiple base regional parts of brain namespace: uberon synonym: "composite part spanning multiple base regional parts of brain" EXACT HUMAN_PREFERRED [BIRNLEX:1304] xref: BIRNLEX:1304 relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0022783 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone namespace: uberon synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone" EXACT HUMAN_PREFERRED [BIRNLEX:1312] xref: BIRNLEX:1312 xref: HBA:4584 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0022791 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone namespace: uberon synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1320] xref: BIRNLEX:1320 xref: HBA:4585 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0022941 name: dorsal nerve root of sacral spinal cord namespace: uberon synonym: "dorsal nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1469] synonym: "posterior nerve root of sacral spinal cord" RELATED [BIRNLEX:1469] xref: BIRNLEX:1469 is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve [Term] id: UBERON:0022943 name: reticulospinal tract namespace: uberon def: "The reticulospinal tract (or anterior reticulospinal tract) is an extrapyramidal motor tract which travels from the reticular formation." [Wikipedia:Reticulospinal_tract] synonym: "reticulospinal tract" EXACT HUMAN_PREFERRED [BIRNLEX:1471] xref: BIRNLEX:1471 xref: neuronames:805 xref: UMLS:C0175558 xref: Wikipedia:Reticulospinal_tract is_a: UBERON:0001018 {source="NIFSTD"} ! axon tract relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter [Term] id: UBERON:0023094 name: posterodorsal nucleus of medial geniculate body namespace: uberon synonym: "nucleus corporis geniculati medialis, pars posterodorsalis" RELATED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate complex" RELATED [BIRNLEX:1622] xref: BIRNLEX:1622 xref: HBA:4447 xref: neuronames:851 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body [Term] id: UBERON:0023255 name: sub-lobar region namespace: uberon synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788] xref: BIRNLEX:1788 is_a: UBERON:0016526 {source="NIFSTD"} ! lobe of cerebral hemisphere [Term] id: UBERON:0023378 name: medullary anterior horn namespace: uberon synonym: "cornu anterius medullaris" EXACT OMO:0003011 [FMA:72610, FMA:TA] synonym: "medullary anterior horn" EXACT HUMAN_PREFERRED [BIRNLEX:2649] xref: BIRNLEX:2649 xref: FMA:72610 xref: neuronames:777 xref: UMLS:C0175539 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0023390 name: medial subnucleus of solitary tract namespace: uberon synonym: "medial part" RELATED [BIRNLEX:2662] synonym: "medial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2662] synonym: "medial subnucleus of the solitary tract" EXACT [NeuroNames:745] synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:2662] synonym: "solitary nucleus, left, meidal subnucleus" EXACT OMO:0003002 [HBA:9661] synonym: "solitary nucleus, medial subnucleus" EXACT [HBA:9661, http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2662 xref: HBA:9661 xref: neuronames:745 xref: UMLS:C0175521 is_a: UBERON:0009050 ! nucleus of solitary tract relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0009050 {source="NIFSTD"} ! nucleus of solitary tract [Term] id: UBERON:0023415 name: lateral amygdaloid nucleus, dorsolateral part namespace: uberon synonym: "lateral amygdaloid nucleus, dorsolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2689] xref: BIRNLEX:2689 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023416 name: lateral amygdaloid nucleus, ventrolateral part namespace: uberon synonym: "lateral amygdaloid nucleus, ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2690] xref: BIRNLEX:2690 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023417 name: lateral amygdaloid nucleus, ventromedial part namespace: uberon synonym: "lateral amygdaloid nucleus, ventromedial part" EXACT HUMAN_PREFERRED [BIRNLEX:2691] xref: BIRNLEX:2691 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023443 name: superficial feature part of forebrain namespace: uberon synonym: "superficial feature part of forebrain" EXACT HUMAN_PREFERRED [BIRNLEX:4005] xref: BIRNLEX:4005 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0023462 name: superficial feature part of occipital lobe namespace: uberon synonym: "superficial feature part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4024] xref: BIRNLEX:4024 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0023564 name: cytoarchitectural part of dentate gyrus namespace: uberon synonym: "cytoarchitectural part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:4126] xref: BIRNLEX:4126 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023623 name: ventral nerve root of sacral spinal cord namespace: uberon synonym: "anterior nerve root of sacral spinal cord" RELATED [BIRNLEX:755] synonym: "ventral nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:755] xref: BIRNLEX:755 is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve [Term] id: UBERON:0023740 name: habenulo-interpeduncular tract of midbrain namespace: uberon synonym: "habenulo-interpeduncular tract of midbrain" EXACT HUMAN_PREFERRED [BIRNLEX:895] xref: BIRNLEX:895 xref: neuronames:818 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum relationship: part_of UBERON:0002138 ! habenulo-interpeduncular tract relationship: part_of UBERON:0016554 ! white matter of midbrain [Term] id: UBERON:0023752 name: intermediate part of hypophysis namespace: uberon synonym: "intermediate lobe of hypophysis" RELATED [BIRNLEX:906] synonym: "intermediate part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:906] synonym: "intermediate region of hypophysis" RELATED [BIRNLEX:906] synonym: "middle lobe of hypophysis" RELATED [BIRNLEX:906] synonym: "pituitary gland, intermediate lobe" RELATED [BIRNLEX:906] xref: BIRNLEX:906 xref: UMLS:C0175321 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002196 {source="NIFSTD"} ! adenohypophysis [Term] id: UBERON:0023787 name: subicular complex namespace: uberon def: "A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90)." [BIRNLEX:944] subset: human_reference_atlas synonym: "subicular complex" EXACT HUMAN_PREFERRED [BIRNLEX:944] xref: BIRNLEX:944 xref: FMA:275157 xref: neuronames:2027 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0023836 name: gross anatomical parts of the cerebellum namespace: uberon synonym: "gross anatomical parts of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:996] xref: BIRNLEX:996 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0023852 name: temporoparietal junction namespace: uberon def: "An area of the brain that locates at the interception of temporal and parietal cortices (at the posterior end of the Sylvian fissure)." [NLX:144255] synonym: "temporoparietal junction" EXACT [NLX:144255] xref: NLX:144255 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex [Term] id: UBERON:0023855 name: commissural nucleus of the solitary tract namespace: uberon synonym: "commissural nucleus of the solitary tract" EXACT [NLX:144259] synonym: "commissural nucleus tractus solitarius" RELATED [NLX:144259] xref: NLX:144259 is_a: UBERON:0009050 ! nucleus of solitary tract relationship: part_of UBERON:0002126 ! solitary tract nuclear complex [Term] id: UBERON:0023859 name: primary somatosensory cortex layer 6 namespace: uberon synonym: "primary somatosensory cortex lamina VI" EXACT [NLX:144265] synonym: "primary somatosensory cortex lamina VI" RELATED [NLX:144265] xref: NLX:144265 is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0008933 {source="NIFSTD"} ! primary somatosensory cortex [Term] id: UBERON:0023861 name: planum polare namespace: uberon def: "A portion of the superior temporal gyrus near the temporal pole in the human." [NLX:144291] subset: human_reference_atlas synonym: "planum polare" EXACT [NLX:144291] xref: HBA:4177 xref: neuronames:2020 xref: NLX:144291 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002769 {source="NIFSTD"} ! superior temporal gyrus property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0023862 name: hippocampal formation of GP94 namespace: uberon def: "The combined region of AmmonÕs horn, subicular complex and dentate gyrus; only fields CA1-CA3 of the hippocampus were considered to be part of the HF, field CA4 being included in the hilus of the dentate gyrus[1]." [NLX:144306] synonym: "hippocampal formation of gp94" EXACT [NLX:144306] xref: NLX:144306 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023865 name: medial ventral tegmental area namespace: uberon synonym: "medial ventral tegmental area" EXACT [NLX:22533] xref: NLX:22533 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002691 {source="NIFSTD"} ! ventral tegmental area [Term] id: UBERON:0023867 name: islands of Calleja of olfactory tubercle namespace: uberon def: "Part of olfactory tubercle defined by dense aggregations of granule cells." [NLX:50741] synonym: "islands of calleja of olfactory tubercle" EXACT [NLX:50741] synonym: "islets of calleja" RELATED [NLX:50741] xref: NLX:50741 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja relationship: part_of UBERON:0001883 {source="NIFSTD"} ! olfactory tubercle [Term] id: UBERON:0023868 name: isla magna of Calleja namespace: uberon def: "Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org)." [NLX:55138] synonym: "insula magna" RELATED [NLX:55138] synonym: "isla magna of calleja" EXACT [NLX:55138] synonym: "large island of calleja" RELATED [NLX:55138] synonym: "major island of Calleja" EXACT [DHBA:10359] xref: DHBA:10359 xref: MBA:489 xref: neuronames:2273 xref: NLX:55138 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja [Term] id: UBERON:0023879 name: neural system namespace: uberon def: "A set of neural structures that subserve a specific function, e.g., visual system." [NLXANAT:090802] synonym: "neural system" EXACT [NLXANAT:090802] xref: NLXANAT:090802 relationship: part_of UBERON:0001016 ! nervous system property_value: IAO:0000116 "this class was inherited from NIFSTD as part of the replacement of NIFSTD with Uberon. It may be obsoleted in the future" xsd:string [Term] id: UBERON:0023900 name: piriform cortex layer 1a namespace: uberon def: "Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract." [NLXANAT:091004] synonym: "piriform cortex layer 1a" EXACT [NLXANAT:091004] xref: NLXANAT:091004 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0014277 {source="NIFSTD"} ! piriform cortex layer 1 [Term] id: UBERON:0023901 name: piriform cortex layer 1b namespace: uberon def: "Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas." [NLXANAT:091005] synonym: "piriform cortex layer 1b" EXACT [NLXANAT:091005] xref: NLXANAT:091005 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0014277 {source="NIFSTD"} ! piriform cortex layer 1 [Term] id: UBERON:0023920 name: basal ganglia of rodent namespace: uberon def: "The basal ganglia of the rodent." [NLXANAT:100311] synonym: "basal ganglia of rodent" EXACT [NLXANAT:100311] synonym: "rodent basal ganglia" RELATED [NLXANAT:100311] xref: NLXANAT:100311 is_a: UBERON:0010011 {source="NIFSTD"} ! collection of basal ganglia [Term] id: UBERON:0023927 name: subbrachial nucleus of mouse of Franklin and Paxinos 2008 namespace: uberon synonym: "subbrachial nucleus of mouse of franklin and paxinos 2008" EXACT [NLXANAT:1005004] xref: NLXANAT:1005004 is_a: UBERON:0006119 {source="NIFSTD"} ! subbrachial nucleus [Term] id: UBERON:0023928 name: postrhinal cortex of rodent of Burwell et al 1995 namespace: uberon def: "Cortical region lying caudal to the perirhinal cortex in the rat. It encompasses the caudal levels of area 35 and the caudal portion of area 36 (ectorhinal cortex). It is bordered medially by agranular retrosplenial cortex and ventrally by the entorhinal cortex (with the exception of the caudomedial portion). The authors note that the ventral portion of the postrhinal cortex in rat may by homologous with the parahippocampal cortex in the monkey." [NLXANAT:1005005] synonym: "postrhinal cortex" RELATED [NLXANAT:1005005] synonym: "postrhinal cortex of rodent" RELATED [NLXANAT:1005005] synonym: "postrhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005005] synonym: "rodent postrhinal cortex" RELATED [NLXANAT:1005005] xref: NLXANAT:1005005 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0023932 name: Sommer's sector namespace: uberon def: "Part of hippocampal formation comprising area CA1 and the subiculum (pg 425, Heimer, L. The human brain and spinal cord, Springer-Verlag, 1995)." [NLXANAT:1005009] synonym: "sommer's sector" EXACT [NLXANAT:1005009] synonym: "sommers sector" RELATED [NLXANAT:1005009] xref: NLXANAT:1005009 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002421 ! hippocampal formation [Term] id: UBERON:0023934 name: olfactory bulb main glomerular layer namespace: uberon def: "The glomerular layer of the main olfactory bulb, lying deep to the olfactory nerve layer. It contains the glomeruli, neuropil rich spheroid structures surrounded by a distinctive shell of small neuros and glial cells (Paxinos, the Rat Nervous System, 2nd ed., Academic Press, 1995)." [NLXANAT:1005011] synonym: "olfactory bulb main glomerular layer" EXACT [NLXANAT:1005011] xref: NLXANAT:1005011 is_a: UBERON:0005377 ! olfactory bulb glomerular layer relationship: part_of UBERON:0009951 ! main olfactory bulb [Term] id: UBERON:0023936 name: perirhinal cortex of Burwell et al 1995 namespace: uberon def: "Rostral portion of the parahippocampal cortex." [NLXANAT:1005013] synonym: "perirhinal cortex" RELATED [NLXANAT:1005013] synonym: "perirhinal cortex of burwell et al 1995" EXACT [NLXANAT:1005013] xref: NLXANAT:1005013 is_a: UBERON:0006083 {source="NIFSTD"} ! perirhinal cortex [Term] id: UBERON:0023958 name: bed nuclei of the stria terminalis oval nucleus namespace: uberon def: "Part of bed nucleus of stria terminalis, comprising a distinct, large, egg-shaped collection of neurons that, together with the juxtacapsular (Ju) and rhomboid (Rh) nuclei, encompass the anterolateral area of the BST (Ju and Swanson, 1989)." [NLXANAT:1005035] synonym: "bed nuclei of the stria terminalis oval nucleus" EXACT [NLXANAT:1005035] xref: NLXANAT:1005035 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] id: UBERON:0023983 name: central cervical spinocerebellar tract namespace: uberon def: "Central cervical spinocerebellar tract." [NLXANAT:1010018] synonym: "central cervical spinocerebellar tract" EXACT [NLXANAT:1010018] xref: NLXANAT:1010018 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract [Term] id: UBERON:0023984 name: rostral spinocerebellar tract namespace: uberon def: "Originates from cells rostral to Clarke's column and sends uncrossed axons through the lateral funiculus to the cerebellum. It reaches the cerebellum partly through the brachium conjunctivum and partly through the restiform body, terminating bilaterally in the anterior lobe of the cerebellum." [NLXANAT:1010019] synonym: "rostral spinocerebellar tract" EXACT [NLXANAT:1010019] xref: NLXANAT:1010019 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract [Term] id: UBERON:0023998 name: cerebellum hemispheric lobule II namespace: uberon synonym: "alar central lobule" RELATED [NLXANAT:20081202] synonym: "central lobule (hII)" RELATED [NLXANAT:20081202] synonym: "hemispheric lobule ii" EXACT [NLXANAT:20081202] synonym: "lobule H II of Larsell" EXACT [FMA:278665] synonym: "lobule II of cerebellar hemisphere" EXACT [FMA:278665] synonym: "lobule II of hemisphere of cerebellum" EXACT [FMA:278665] xref: FMA:278665 xref: NLXANAT:20081202 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebellum [Term] id: UBERON:0023999 name: cerebellum hemispheric lobule III namespace: uberon synonym: "alar central lobule" RELATED [NLXANAT:20081203] synonym: "central lobule (hIII)" RELATED [NLXANAT:20081203] synonym: "hemispheric lobule III" EXACT [NLXANAT:20081203] synonym: "lobule H III of Larsell" EXACT [FMA:278672] synonym: "lobule III of cerbellar hemisphere" EXACT [FMA:278672] synonym: "lobule III of hemisphere of cerebellum" EXACT [FMA:278672] xref: FMA:278672 xref: NLXANAT:20081203 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebellum [Term] id: UBERON:0024000 name: cerebellum hemispheric lobule IV namespace: uberon synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081204] synonym: "culmen lobule (hIV)" RELATED [NLXANAT:20081204] synonym: "hemispheric lobule IV" EXACT [NLXANAT:20081204] synonym: "lobule H IV of Larsell" EXACT [FMA:278683] synonym: "lobule IV of cerebellar hemisphere" EXACT [FMA:278683] synonym: "lobulus anterior" RELATED [NLXANAT:20081204] synonym: "lobulus quadrangularis anterior" RELATED [NLXANAT:20081204] synonym: "quadrangular lobule" RELATED [NLXANAT:20081204] xref: FMA:278683 xref: NLXANAT:20081204 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebellum [Term] id: UBERON:0024001 name: cerebellum hemispheric lobule V namespace: uberon synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081205] synonym: "culmen lobule (hV)" RELATED [NLXANAT:20081205] synonym: "hemispheric lobule V" EXACT [NLXANAT:20081205] synonym: "lobule H V of Larsell" EXACT [FMA:278723] synonym: "lobule V of cerebellar hemisphere" EXACT [FMA:278723] synonym: "lobulus anterior" RELATED [NLXANAT:20081205] synonym: "lobulus quadrangularis anterior" RELATED [NLXANAT:20081205] synonym: "quadrangular lobule" RELATED [NLXANAT:20081205] xref: FMA:278723 xref: NLXANAT:20081205 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebellum [Term] id: UBERON:0024003 name: cerebellum hemispheric lobule VII namespace: uberon synonym: "hemispheric lobule VII" EXACT [NLXANAT:20081207] xref: NLXANAT:20081207 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule [Term] id: UBERON:0024009 name: cerebellum hemispheric lobule X namespace: uberon synonym: "flocculus" RELATED [NLXANAT:20081213] synonym: "hemispheric lobule X" EXACT [NLXANAT:20081213] xref: NLXANAT:20081213 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe [Term] id: UBERON:0024037 name: vermis of the flocculonodular lobe of the cerebellum namespace: uberon synonym: "flocculonodular vermis" EXACT [UBERON:cjm] synonym: "vermis of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081241] xref: NLXANAT:20081241 is_a: UBERON:0004720 {source="NIFSTD"} ! cerebellar vermis [Term] id: UBERON:0024043 name: rostral portion of the medial accessory olive namespace: uberon synonym: "rostral portion of the medial accessory olive" EXACT HUMAN_PREFERRED [NLXANAT:20081247] xref: NLXANAT:20081247 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] id: UBERON:0024045 name: white matter of the cerebellar cortex namespace: uberon def: "White matter that lies deep to the granular cell layer of the cerebellar cortex. It contains afferents to the cerebellar cortex and axons that run between the cerebellar cortex and the deep cerebellar nuclei." [NLXANAT:20081249] synonym: "white matter of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081249] xref: NLXANAT:20081249 is_a: UBERON:0019291 ! white matter of metencephalon relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0024046 name: superficial feature part of the cerebellum namespace: uberon synonym: "superficial feature part of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081250] xref: NLXANAT:20081250 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0024078 name: principal anterior division of supraoptic nucleus namespace: uberon def: "One of two divisions of the supraoptic nucleus observed in mammals, formed by the ascension of the optic chiasm to split the nucleus in two. The principal anterior division consists of a dense cluster of large cells that stain darkly in Nissl preparations adjacent to the optic chiasm, extending as far rostrally to the organum vasculosum of the lamina terminalis and caudally into the posterior hypothalamus." [NLXANAT:20090310] synonym: "principal anterior division of supraoptic nucleus" EXACT [NLXANAT:20090310] xref: NLXANAT:20090310 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0024079 name: tuberal supraoptic nucleus namespace: uberon def: "Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm." [NLXANAT:20090311] synonym: "retrochiasmatic subdivision" RELATED [NLXANAT:20090311] synonym: "tuberal supraoptic nucleus" EXACT [NLXANAT:20090311] xref: NLXANAT:20090311 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0001929 {source="NIFSTD"} ! supraoptic nucleus [Term] id: UBERON:0024090 name: chemoarchitectural part of brain namespace: uberon def: "Regional part of an anatomical region that is revealed by the use of a stain that reveals chemoarchitecture." [NLXANAT:20090501] synonym: "chemoarchitectural part" EXACT [NLXANAT:20090501] xref: NLXANAT:20090501 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0024110 name: basis pontis namespace: uberon def: "The basis pontis is the anterior portion of the pons." [Wikipedia:Basilar_part_of_pons] synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704] xref: NLXANAT:20090704 xref: Wikipedia:Basilar_part_of_pons is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000988 {source="NIFSTD"} ! pons [Term] id: UBERON:0024151 name: tegmentum namespace: uberon def: "The ventral topographic division of the midbrain; the dorsal topographic division is the tectum. Meckel (1817; see English translation, 1832, vol. 2, p. 467) apparently introduced the term and roughly its definition here for macrodissected adult humans, except he excluded the cerebral peduncle (Tarin, 1753), a white matter tract at the base of the midbrain, which is still common today but is included here. As defined here, tegmentum refers to the whole of the midbrain (Baer, 1837) excluding the tectum but including the pretectal region (Scalia, 1972); see Swanson (2000, pp. 522, 526). Usage of this term is very complex, inconsistent, and illogical; see for example Crosby et al. (1962, pp. 221, 260, 262), Carpenter (1976, p. 367 ff.)." [BIRNLEX:1031] subset: human_reference_atlas synonym: "tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1031] xref: BIRNLEX:1031 xref: Wikipedia:Tegmentum is_a: UBERON:0022776 {source="NIFSTD"} ! composite part spanning multiple base regional parts of brain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0024183 name: inferior transverse frontopolar gyrus namespace: uberon synonym: "inferior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1064] xref: BIRNLEX:1064 xref: FMA:274414 xref: neuronames:842 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex [Term] id: UBERON:0024193 name: medial transverse frontopolar gyrus namespace: uberon synonym: "medial transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1074] xref: BIRNLEX:1074 xref: neuronames:823 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex [Term] id: UBERON:0024201 name: superior transverse frontopolar gyrus namespace: uberon synonym: "superior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1082] xref: BIRNLEX:1082 xref: FMA:274408 xref: neuronames:1 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex [Term] id: UBERON:0024382 name: ventral nerve root of lumbar spinal cord namespace: uberon synonym: "anterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1266] synonym: "ventral nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1266] xref: BIRNLEX:1266 is_a: UBERON:0009631 {source="NIFSTD"} ! root of lumbar spinal nerve [Term] id: UBERON:0024900 name: left sub-lobar region namespace: uberon synonym: "left sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1789] xref: BIRNLEX:1789 is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region [Term] id: UBERON:0024901 name: right sub-lobar region namespace: uberon synonym: "right sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1790] xref: BIRNLEX:1790 is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region [Term] id: UBERON:0024914 name: circuit part of central nervous system namespace: uberon def: "A collection of neuronal components interacting in a functional circuit. A neural circuit is bounded by the nervous sytem regions in which its participating neuronal components are contained (BB)." [BIRNLEX:2513] synonym: "circuit part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2513] xref: BIRNLEX:2513 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0024940 name: ganglion part of peripheral nervous system namespace: uberon def: "A spatially aggregated collection of nerve cell body parts in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO)." [BIRNLEX:2548] synonym: "ganglion part of peripheral nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2548] xref: BIRNLEX:2548 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0025096 name: superior calcarine sulcus namespace: uberon synonym: "sulcus calcarinus superior" RELATED [BIRNLEX:4014] synonym: "superior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4014] synonym: "superior ramus of calcarine fissure" RELATED [BIRNLEX:4014] synonym: "upper calcarine sulcus" RELATED [BIRNLEX:4014] xref: BIRNLEX:4014 xref: neuronames:147 xref: UMLS:C0262333 is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0025102 name: inferior occipital sulcus namespace: uberon synonym: "inferior occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4020] synonym: "sulcus occipitalis inferior" RELATED [BIRNLEX:4020] xref: BIRNLEX:4020 xref: neuronames:144 xref: UMLS:C0262253 is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0025103 name: inferior calcarine sulcus namespace: uberon synonym: "inferior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4021] synonym: "inferior ramus of calcarine fissure" RELATED [BIRNLEX:4021] synonym: "lower calcarine sulcus" RELATED [BIRNLEX:4021] synonym: "sulcus calcarinus inferior" RELATED [BIRNLEX:4021] xref: BIRNLEX:4021 xref: neuronames:148 xref: UMLS:C0262249 is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0025104 name: ectocalcarine sulcus namespace: uberon synonym: "ectocalcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4022] synonym: "external calcarine fissure" RELATED [BIRNLEX:4022] synonym: "external calcarine sulcus" RELATED [BIRNLEX:4022] synonym: "sulcus ectocalcarinus" RELATED [BIRNLEX:4022] xref: BIRNLEX:4022 xref: neuronames:146 xref: UMLS:C0262230 is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0025261 name: thalamic fiber tract namespace: uberon synonym: "thalamic fiber tracts" EXACT HUMAN_PREFERRED [BIRNLEX:749] xref: BIRNLEX:749 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0025525 name: motor system namespace: uberon def: "The part of the central nervous system that is involved with movement." [Wikipedia:Motor_system] comment: It consists of the pyramidal and extrapyramidal system synonym: "motor system" EXACT [NLXANAT:090805] xref: NLXANAT:090805 is_a: UBERON:0023879 {source="NIFSTD"} ! neural system [Term] id: UBERON:0025533 name: proprioceptive system namespace: uberon def: "The sensory system for the sense of proprioception." [NLXANAT:090814] synonym: "proprioceptive system" EXACT [NLXANAT:090814] xref: NLXANAT:090814 is_a: UBERON:0023879 ! neural system [Term] id: UBERON:0025534 name: sensorimotor system namespace: uberon synonym: "sensorimotor" BROAD [NLXANAT:090815] xref: NLXANAT:090815 is_a: UBERON:0023879 {source="NIFSTD"} ! neural system [Term] id: UBERON:0025581 name: perirhinal cortex of primate of Burwell et al 1995 namespace: uberon def: "Cortical region near the rhinal sulcus in primate encompassing Brodmann's areas 35 and 36." [NLXANAT:1005014] synonym: "perirhinal cortex of primate" RELATED [UBERON:cjm] synonym: "perirhinal cortex of primate of burwell et al 1995" EXACT [NLXANAT:1005014] synonym: "primate perirhinal cortex" RELATED [UBERON:cjm] xref: NLXANAT:1005014 is_a: UBERON:0023936 {source="NIFSTD"} ! perirhinal cortex of Burwell et al 1995 [Term] id: UBERON:0025584 name: perirhinal cortex of rodent of Burwell et al 1995 namespace: uberon def: "Cortical region surrounding the posterior rhinal sulcus in the rat, encompassing areas 35 and 36 in the rat. Rostraly, it abuts the posterior insular cortex." [NLXANAT:1005017] synonym: "perirhinal cortex of rodent" RELATED [NLXANAT:1005017] synonym: "perirhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005017] synonym: "rodent perirhinal cortex" RELATED [NLXANAT:1005017] xref: NLXANAT:1005017 is_a: UBERON:0023936 {source="NIFSTD"} ! perirhinal cortex of Burwell et al 1995 relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex [Term] id: UBERON:0025677 name: paravermis parts of the cerebellar cortex namespace: uberon synonym: "paravermis parts of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081237] synonym: "pars intermedia" RELATED [NLXANAT:20081237] xref: NLXANAT:20081237 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0004006 {source="cjm"} ! cerebellum intermediate zone [Term] id: UBERON:0025736 name: chemoarchitectural part of striatum namespace: uberon synonym: "chemoarchitectural part of neostriatum" EXACT [NLXANAT:20090502] xref: NLXANAT:20090502 is_a: UBERON:0024090 ! chemoarchitectural part of brain relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:0025763 name: rostral sulcus namespace: uberon synonym: "rostral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1012] xref: BIRNLEX:1012 xref: UMLS:C0262327 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0025768 name: posterior middle temporal sulcus namespace: uberon synonym: "posterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1017] xref: BIRNLEX:1017 xref: neuronames:133 xref: UMLS:C0694594 is_a: UBERON:0014687 ! temporal sulcus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0025772 name: spur of arcuate sulcus namespace: uberon synonym: "spur of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1021] xref: BIRNLEX:1021 xref: neuronames:830 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0034671 ! arcuate sulcus [Term] id: UBERON:0025829 name: anterior parieto-occipital sulcus namespace: uberon synonym: "anterior parieto-occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1079] synonym: "medial parieto-occipital fissure" RELATED [BIRNLEX:1079] synonym: "sulcus parieto-occipitalis anterior" RELATED [BIRNLEX:1079] xref: BIRNLEX:1079 xref: neuronames:53 xref: UMLS:C0262195 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002695 ! parieto-occipital sulcus [Term] id: UBERON:0025883 name: superior ramus of arcuate sulcus namespace: uberon synonym: "superior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1132] xref: BIRNLEX:1132 xref: UMLS:C0262339 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0034671 ! arcuate sulcus [Term] id: UBERON:0025903 name: principal sulcus namespace: uberon def: "Sulcus in the frontal lobe of the macaque. (Brain Info)." [BIRNLEX:1154] synonym: "principal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1154] xref: BIRNLEX:1154 xref: neuronames:66 xref: UMLS:C0262323 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026006 name: dorsal nerve root of lumbar spinal cord namespace: uberon synonym: "dorsal nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1259] synonym: "posterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1259] xref: BIRNLEX:1259 is_a: UBERON:0009631 {source="NIFSTD"} ! root of lumbar spinal nerve [Term] id: UBERON:0026137 name: annectant gyrus namespace: uberon synonym: "annectant gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1391] xref: BIRNLEX:1391 xref: neuronames:153 xref: UMLS:C0694596 is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026246 name: sacral spinal cord white matter namespace: uberon subset: human_reference_atlas synonym: "sacral spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1500] xref: BIRNLEX:1500 is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0005843 ! sacral spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0026293 name: thoracic spinal cord gray commissure namespace: uberon subset: human_reference_atlas synonym: "thoracic spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1547] xref: BIRNLEX:1547 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord is_a: UBERON:0014636 ! thoracic spinal cord gray matter relationship: part_of UBERON:0003038 ! thoracic spinal cord relationship: part_of UBERON:0014636 ! thoracic spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0026382 name: inferior ramus of arcuate sulcus namespace: uberon synonym: "inferior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1635] xref: BIRNLEX:1635 xref: neuronames:65 xref: UMLS:C0262258 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0034671 ! arcuate sulcus [Term] id: UBERON:0026384 name: lateral orbital sulcus namespace: uberon synonym: "lateral orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1637] xref: BIRNLEX:1637 xref: neuronames:81 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026386 name: lumbar spinal cord white matter namespace: uberon subset: human_reference_atlas synonym: "lumbar spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1639] xref: BIRNLEX:1639 is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0002792 ! lumbar spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0026391 name: medial orbital sulcus namespace: uberon synonym: "medial orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1644] xref: BIRNLEX:1644 xref: neuronames:82 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026541 name: dorsomedial subnucleus of solitary tract namespace: uberon synonym: "dorsomedial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:1799] synonym: "nucleus of the solitary tract, dorsomedial part" RELATED [BIRNLEX:1799] xref: BIRNLEX:1799 xref: neuronames:744 xref: UMLS:C0175520 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0026546 name: principal neuronal circuit namespace: uberon def: "A neuronal circuit bearing a principal projection neuron whose axon extends beyond the region where its soma is located to synapse on the dendrites of cells in other regions of the nervous system (BB)." [BIRNLEX:2514] synonym: "principal neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2514] xref: BIRNLEX:2514 is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system [Term] id: UBERON:0026547 name: intrinsic neuronal circuit namespace: uberon def: "A neuronal circuit where all the participating neurons are bounded within a defined and limited region of the nervous system.(BB)." [BIRNLEX:2515] synonym: "intrinsic neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2515] xref: BIRNLEX:2515 is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system [Term] id: UBERON:0026663 name: dorsolateral subnucleus of solitary tract namespace: uberon synonym: "dorsolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2659] synonym: "nucleus of the solitary tract, dorsolateral part" RELATED [BIRNLEX:2659] xref: BIRNLEX:2659 xref: neuronames:743 xref: UMLS:C0175519 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0026666 name: parvocellular subnucleus of solitary tract namespace: uberon synonym: "parvicellular subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2663] xref: BIRNLEX:2663 xref: neuronames:746 xref: UMLS:C0175522 is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0026719 name: intermediate frontal sulcus namespace: uberon synonym: "intermediate frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4006] synonym: "sulcus frontalis intermedius" RELATED [BIRNLEX:4006] xref: BIRNLEX:4006 xref: UMLS:C0228199 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026721 name: medial precentral sulcus namespace: uberon def: "A superficial feature of the frontal lobe that extends from the dorsal surface onto the medial surface of the superior frontal gyrus (Ono-90). (NN)." [BIRNLEX:4008] synonym: "medial precentral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4008] xref: BIRNLEX:4008 xref: neuronames:1610 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0026722 name: transverse parietal sulcus namespace: uberon def: "A sulcus in the human parietal lobe that branches dorsally from the intraparietal sulcus (Savel'ev-96). (NN)." [BIRNLEX:4009] synonym: "transverse parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4009] xref: BIRNLEX:4009 xref: neuronames:2295 is_a: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0026723 name: inferior parietal sulcus namespace: uberon synonym: "inferior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4010] xref: BIRNLEX:4010 is_a: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0026724 name: superior parietal sulcus namespace: uberon def: "A superficial feature of the parietal lobe that extends from the dorsal surface of the superior parietal lobule across the margin of the parietal lobe into the precuneus (Ono-90). (NN)." [BIRNLEX:4011] synonym: "superior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4011] xref: BIRNLEX:4011 xref: neuronames:1611 is_a: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0026725 name: angular sulcus namespace: uberon def: "A superficial feature of the parietal lobe. It is the portion of the superior temporal sulcus that extends into the angular gyrus (Ono-90). (NN)." [BIRNLEX:4012] synonym: "angular sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4012] xref: BIRNLEX:4012 xref: HBA:9384 xref: neuronames:2386 is_a: UBERON:0014687 ! temporal sulcus is_a: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0002686 {source="NIFSTD"} ! angular gyrus relationship: part_of UBERON:0002734 {source="NIFSTD"} ! superior temporal sulcus [Term] id: UBERON:0026760 name: inferior sagittal sulcus namespace: uberon synonym: "inferior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4047] xref: BIRNLEX:4047 is_a: UBERON:0034968 ! sagittal sulcus [Term] id: UBERON:0026761 name: superior sagittal sulcus namespace: uberon synonym: "superior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4048] xref: BIRNLEX:4048 is_a: UBERON:0034968 ! sagittal sulcus [Term] id: UBERON:0026765 name: Hadjikhani et al. (1998) visuotopic partition scheme region namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic partition scheme region" EXACT HUMAN_PREFERRED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic areas" RELATED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic parcellation scheme" RELATED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic partition scheme" RELATED [BIRNLEX:4052] xref: BIRNLEX:4052 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026775 name: Tootell and Hadjikhani (2001) LOC/LOP complex namespace: uberon def: "Cortical parcel in occipital cortex of human according to Tootell and Hadjikhani 2001 that is activated preferentially by more peripheral stimuli compared to the adjacent lateral occipital central parcel." [BIRNLEX:4062] synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT HUMAN_PREFERRED [BIRNLEX:4062] xref: BIRNLEX:4062 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026776 name: Press, Brewer, Dougherty, Wade and Wandell (2001) visuotopic area V7 namespace: uberon synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" EXACT HUMAN_PREFERRED [BIRNLEX:4063] xref: BIRNLEX:4063 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026777 name: Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region namespace: uberon synonym: "ongur, price, and ferry (2003) prefrontal cortical areas" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical parcellation scheme" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme region" EXACT HUMAN_PREFERRED [BIRNLEX:4064] xref: BIRNLEX:4064 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016525 ! frontal lobe [Term] id: UBERON:0027061 name: isthmus of cingulate cortex namespace: uberon synonym: "isthmus of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:943] xref: BIRNLEX:943 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0027109 name: lateral eminence of hypophysis namespace: uberon synonym: "lateral eminence" BROAD [] synonym: "lateral eminence of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:994] xref: BIRNLEX:994 xref: neuronames:400 xref: UMLS:C0262266 relationship: part_of UBERON:0000007 {source="NIFSTD"} ! pituitary gland [Term] id: UBERON:0027113 name: anterior middle temporal sulcus namespace: uberon synonym: "anterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:998] xref: BIRNLEX:998 xref: neuronames:132 xref: UMLS:C0694593 is_a: UBERON:0014687 ! temporal sulcus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0027244 name: striosomal part of body of caudate nucleus namespace: uberon synonym: "striosomal part of body of caudate nucleus" EXACT [NLXANAT:1010004] xref: NLXANAT:1010004 is_a: UBERON:0029004 ! striosomal part of caudate nucleus relationship: part_of UBERON:0002630 ! body of caudate nucleus [Term] id: UBERON:0027245 name: matrix part of head of caudate nucleus namespace: uberon def: "Matrix compartment located in the head of the caudate nucleus." [NLXANAT:1010005] synonym: "matrix compartment of head of caudate nucleus" EXACT [] synonym: "matrix part of head of caudate nucleus" EXACT [NLXANAT:1010005] xref: NLXANAT:1010005 is_a: UBERON:0029001 ! matrix compartment of caudate nucleus relationship: part_of UBERON:0002626 ! head of caudate nucleus [Term] id: UBERON:0027246 name: matrix part of tail of caudate nucleus namespace: uberon def: "Matrix compartment located in the tail of the caudate nucleus." [NLXANAT:1010006] synonym: "matrix compartment of tail of caudate nucleus" EXACT [] synonym: "matrix part of tail of caudate nucleus" EXACT [NLXANAT:1010006] xref: NLXANAT:1010006 is_a: UBERON:0029001 ! matrix compartment of caudate nucleus relationship: part_of UBERON:0002628 ! tail of caudate nucleus [Term] id: UBERON:0027285 name: paravermis lobule area namespace: uberon subset: human_reference_atlas synonym: "paravermis of cerebellum" EXACT [DHBA:12384] synonym: "regional parts of the paravermal lobules" EXACT HUMAN_PREFERRED [NLXANAT:20081214] xref: DHBA:12384 xref: NLXANAT:20081214 is_a: UBERON:0004003 ! cerebellum hemisphere lobule is_a: UBERON:0004004 {source="NIFSTD"} ! cerebellum lobule relationship: part_of UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex property_value: IAO:0000116 "consider merging" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0027309 name: paravermis of the posterior lobe of the cerebellum namespace: uberon synonym: "paravermis of the posterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081238] synonym: "paravermis, posterior lobe portion" EXACT [DHBA:12386] xref: DHBA:12386 xref: NLXANAT:20081238 is_a: UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex [Term] id: UBERON:0027310 name: paravermis of the anterior lobe of the cerebellum namespace: uberon synonym: "paravermis of the anterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081239] synonym: "paravermis, anterior lobe portion" EXACT [DHBA:12385] xref: DHBA:12385 xref: NLXANAT:20081239 is_a: UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex [Term] id: UBERON:0027331 name: flocculonodular lobe, hemisphere portion namespace: uberon synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081260] xref: NLXANAT:20081260 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! cerebellar hemisphere relationship: part_of UBERON:0003012 ! flocculonodular lobe [Term] id: UBERON:0027333 name: arbor vitae namespace: uberon def: "The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae." [NLXANAT:20090101] synonym: "arbor vitae" EXACT HUMAN_PREFERRED [NLXANAT:20090101] xref: neuronames:692 xref: NLXANAT:20090101 is_a: UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0027368 name: matrix compartment namespace: uberon def: "The larger of two chemoarchitectural compartments identified in the neostriatum through differential staining for various biochemical markers. It usually is identified through differentially high staining for acetylcholinesterase and calbinin D28K." [NLXANAT:20090503] synonym: "matrix" RELATED [NLXANAT:20090503] synonym: "matrix compartment" EXACT [NLXANAT:20090503] xref: NLXANAT:20090503 is_a: UBERON:0025736 {source="NIFSTD"} ! chemoarchitectural part of striatum [Term] id: UBERON:0027371 name: striosome namespace: uberon def: "One of two compartments identified in the neostriatum, particularly the caudate nucleus, on the basis of differential staining for several biochemical markers such as acetylcholinesterase and calbindin. In individual sections, the striosomes appear as small patches of differentially high or low staining activity. In three dimensions, they form a 3D labyrinth extending throughout the caudate nucleus and in the putamen." [NLXANAT:20090506] synonym: "striosomal compartment" EXACT [NLXANAT:20090506] synonym: "striosomal part" RELATED [] synonym: "striosome" EXACT [NLXANAT:20090506] xref: NLXANAT:20090506 is_a: UBERON:0025736 {source="NIFSTD"} ! chemoarchitectural part of striatum [Term] id: UBERON:0027513 name: posterior superior frontal sulcus namespace: uberon synonym: "posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1130] xref: BIRNLEX:1130 relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus [Term] id: UBERON:0027716 name: anterior superior frontal sulcus namespace: uberon synonym: "anterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1338] synonym: "anterior superior frontal sulcus" RELATED [NeuroNames:838] synonym: "polar notch" RELATED [NeuroNames:838] synonym: "sulcus frontalis superior anterior" RELATED OMO:0003011 [NeuroNames:838] xref: BIRNLEX:1338 xref: neuronames:838 relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus [Term] id: UBERON:0027768 name: suprachiasmatic nucleus dorsomedial part namespace: uberon synonym: "suprachiasmatic nucleus dorsomedial part" EXACT HUMAN_PREFERRED [BIRNLEX:1390] xref: BIRNLEX:1390 xref: HBA:4591 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002034 ! suprachiasmatic nucleus [Term] id: UBERON:0027771 name: suprachiasmatic nucleus ventrolateral part namespace: uberon synonym: "suprachiasmatic nucleus ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:1393] xref: BIRNLEX:1393 xref: HBA:4592 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002034 ! suprachiasmatic nucleus [Term] id: UBERON:0028395 name: calcarine sulcus (dorsal) namespace: uberon synonym: "calcarine sulcus (dorsal)" EXACT HUMAN_PREFERRED [BIRNLEX:4050] xref: BIRNLEX:4050 relationship: part_of UBERON:0002586 ! calcarine sulcus [Term] id: UBERON:0028396 name: calcarine sulcus (ventral) namespace: uberon synonym: "calcarine sulcus (ventral)" EXACT HUMAN_PREFERRED [BIRNLEX:4051] xref: BIRNLEX:4051 relationship: part_of UBERON:0002586 ! calcarine sulcus [Term] id: UBERON:0028398 name: Hadjikhani et al. (1998) visuotopic area V1d namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v1d" EXACT HUMAN_PREFERRED [BIRNLEX:4053] xref: BIRNLEX:4053 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028399 name: Hadjikhani et al. (1998) visuotopic area V1v namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v1v" EXACT HUMAN_PREFERRED [BIRNLEX:4054] xref: BIRNLEX:4054 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028401 name: Hadjikhani et al. (1998) visuotopic area V2v namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v2v" EXACT HUMAN_PREFERRED [BIRNLEX:4056] xref: BIRNLEX:4056 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028402 name: Hadjikhani et al. (1998) visuotopic area V3 namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v3" EXACT HUMAN_PREFERRED [BIRNLEX:4057] xref: BIRNLEX:4057 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028403 name: Hadjikhani et al. (1998) visuotopic area V3A namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v3a" EXACT HUMAN_PREFERRED [BIRNLEX:4058] xref: BIRNLEX:4058 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028404 name: Hadjikhani et al. (1998) visuotopic area VP namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area vp" EXACT HUMAN_PREFERRED [BIRNLEX:4059] xref: BIRNLEX:4059 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028405 name: Hadjikhani et al. (1998) visuotopic area V4v namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v4v" EXACT HUMAN_PREFERRED [BIRNLEX:4060] xref: BIRNLEX:4060 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028406 name: Hadjikhani et al. (1998) visuotopic area V8 namespace: uberon synonym: "Hadjikhani et al. (1998) visuotopic area v8" EXACT HUMAN_PREFERRED [BIRNLEX:4061] xref: BIRNLEX:4061 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region [Term] id: UBERON:0028412 name: Ongur, Price, and Ferry (2003) area 10p namespace: uberon synonym: "ongur, price, and ferry (2003) area 10p" EXACT HUMAN_PREFERRED [BIRNLEX:4067] xref: BIRNLEX:4067 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028413 name: Ongur, Price, and Ferry (2003) area 10r namespace: uberon synonym: "ongur, price, and ferry (2003) area 10r" EXACT HUMAN_PREFERRED [BIRNLEX:4068] xref: BIRNLEX:4068 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028414 name: Ongur, Price, and Ferry (2003) area 10o namespace: uberon synonym: "ongur, price, and ferry (2003) area 10o" EXACT HUMAN_PREFERRED [BIRNLEX:4069] xref: BIRNLEX:4069 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028415 name: Ongur, Price, and Ferry (2003) area 10m namespace: uberon def: "Area 10m is a cortical area in the frontal lobe defined on multiple architectonic criteria." [BIRNLEX:4070] synonym: "ongur, price, and ferry (2003) area 10m" EXACT HUMAN_PREFERRED [BIRNLEX:4070] xref: BIRNLEX:4070 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028416 name: Ongur, Price, and Ferry (2003) area 11m namespace: uberon synonym: "ongur, price, and ferry (2003) area 11m" EXACT HUMAN_PREFERRED [BIRNLEX:4071] xref: BIRNLEX:4071 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028417 name: Ongur, Price, and Ferry (2003) area 47s namespace: uberon synonym: "ongur, price, and ferry (2003) area 47s" EXACT HUMAN_PREFERRED [BIRNLEX:4072] xref: BIRNLEX:4072 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028418 name: Ongur, Price, and Ferry (2003) area 13b namespace: uberon synonym: "ongur, price, and ferry (2003) area 13b" EXACT HUMAN_PREFERRED [BIRNLEX:4073] xref: BIRNLEX:4073 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028419 name: Ongur, Price, and Ferry (2003) area 13a namespace: uberon synonym: "ongur, price, and ferry (2003) area 13a" EXACT HUMAN_PREFERRED [BIRNLEX:4074] xref: BIRNLEX:4074 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028420 name: Ongur, Price, and Ferry (2003) area 14r namespace: uberon synonym: "ongur, price, and ferry (2003) area 14r" EXACT HUMAN_PREFERRED [BIRNLEX:4075] xref: BIRNLEX:4075 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028421 name: Ongur, Price, and Ferry (2003) area 14c namespace: uberon synonym: "ongur, price, and ferry (2003) area 14c" EXACT HUMAN_PREFERRED [BIRNLEX:4076] xref: BIRNLEX:4076 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028422 name: Ongur, Price, and Ferry (2003) area 24 namespace: uberon synonym: "ongur, price, and ferry (2003) area 24" EXACT HUMAN_PREFERRED [BIRNLEX:4077] xref: BIRNLEX:4077 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028423 name: Ongur, Price, and Ferry (2003) area 25 namespace: uberon synonym: "ongur, price, and ferry (2003) area 25" EXACT HUMAN_PREFERRED [BIRNLEX:4078] xref: BIRNLEX:4078 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028424 name: Ongur, Price, and Ferry (2003) area 32 namespace: uberon synonym: "ongur, price, and ferry (2003) area 32" EXACT HUMAN_PREFERRED [BIRNLEX:4079] xref: BIRNLEX:4079 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028425 name: Ongur, Price, and Ferry (2003) area G namespace: uberon synonym: "ongur, price, and ferry (2003) area g" EXACT HUMAN_PREFERRED [BIRNLEX:4080] xref: BIRNLEX:4080 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028426 name: Ongur, Price, and Ferry (2003) area PrCO namespace: uberon alt_id: UBERON:0028438 synonym: "ongur, price, and ferry (2003) area prco" EXACT HUMAN_PREFERRED [BIRNLEX:4081] xref: BIRNLEX:4081 xref: BIRNLEX:4093 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028427 name: Ongur, Price, and Ferry (2003) area 11l namespace: uberon synonym: "ongur, price, and ferry (2003) area 11l" EXACT HUMAN_PREFERRED [BIRNLEX:4082] xref: BIRNLEX:4082 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028428 name: Ongur, Price, and Ferry (2003) area 13m namespace: uberon synonym: "ongur, price, and ferry (2003) area 13m" EXACT HUMAN_PREFERRED [BIRNLEX:4083] xref: BIRNLEX:4083 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028429 name: Ongur, Price, and Ferry (2003) area 13l namespace: uberon synonym: "ongur, price, and ferry (2003) area 13l" EXACT HUMAN_PREFERRED [BIRNLEX:4084] xref: BIRNLEX:4084 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028430 name: Ongur, Price, and Ferry (2003) area 47l namespace: uberon synonym: "ongur, price, and ferry (2003) area 47l" EXACT HUMAN_PREFERRED [BIRNLEX:4085] xref: BIRNLEX:4085 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028431 name: Ongur, Price, and Ferry (2003) area 47m namespace: uberon synonym: "ongur, price, and ferry (2003) area 47m" EXACT HUMAN_PREFERRED [BIRNLEX:4086] xref: BIRNLEX:4086 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028432 name: Ongur, Price, and Ferry (2003) area 47r namespace: uberon synonym: "ongur, price, and ferry (2003) area 47r" EXACT HUMAN_PREFERRED [BIRNLEX:4087] xref: BIRNLEX:4087 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028433 name: Ongur, Price, and Ferry (2003) area Iam namespace: uberon synonym: "ongur, price, and ferry (2003) area iam" EXACT HUMAN_PREFERRED [BIRNLEX:4088] xref: BIRNLEX:4088 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028434 name: Ongur, Price, and Ferry (2003) area Ial namespace: uberon def: "Insula agranular lateral area." [BIRNLEX:4089] synonym: "ongur, price, and ferry (2003) area ial" EXACT HUMAN_PREFERRED [BIRNLEX:4089] xref: BIRNLEX:4089 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028435 name: Ongur, Price, and Ferry (2003) area Iai namespace: uberon synonym: "ongur, price, and ferry (2003) area iai" EXACT HUMAN_PREFERRED [BIRNLEX:4090] xref: BIRNLEX:4090 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028436 name: Ongur, Price, and Ferry (2003) area 9 namespace: uberon synonym: "ongur, price, and ferry (2003) area 9" EXACT HUMAN_PREFERRED [BIRNLEX:4091] xref: BIRNLEX:4091 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028437 name: Ongur, Price, and Ferry (2003) area 10l namespace: uberon synonym: "ongur, price, and ferry (2003) area 10l" EXACT HUMAN_PREFERRED [BIRNLEX:4092] xref: BIRNLEX:4092 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028439 name: Ongur, Price, and Ferry (2003) area Iapm namespace: uberon synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094] xref: BIRNLEX:4094 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028440 name: Ongur, Price, and Ferry (2003) area AON namespace: uberon synonym: "ongur, price, and ferry (2003) area aon" EXACT HUMAN_PREFERRED [BIRNLEX:4095] xref: BIRNLEX:4095 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region [Term] id: UBERON:0028622 name: banks of superior temporal sulcus namespace: uberon def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the superior temporal gyrus and the caudal boundary the middle temporal gyrus. Within the FreeSurfer definition, this reflects primarily the posterior aspect of the superior temporal sulcus (Christine Fennema-Notestine)." [BIRNLEX:862] synonym: "banks of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:862] xref: BIRNLEX:862 relationship: part_of UBERON:0002734 ! superior temporal sulcus [Term] id: UBERON:0028715 name: caudal anterior cingulate cortex namespace: uberon def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the genu of the corpus callosum whereas the caudal boundary was established as the first appearance of the mammillary bodies. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was the corpus callosum (Christine Fennema-Notestine)." [BIRNLEX:967] synonym: "caudal anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:967] xref: BIRNLEX:967 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0009835 ! anterior cingulate cortex [Term] id: UBERON:0028918 name: paravermic lobule II namespace: uberon synonym: "paravermic lobule ii" EXACT HUMAN_PREFERRED [NLXANAT:20081215] xref: HBA:4717 xref: NLXANAT:20081215 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028919 name: paravermic lobule III namespace: uberon synonym: "paravermic lobule iii" EXACT HUMAN_PREFERRED [NLXANAT:20081216] xref: HBA:4718 xref: NLXANAT:20081216 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028920 name: paravermic lobule IV namespace: uberon synonym: "paravermic lobule iv" EXACT HUMAN_PREFERRED [NLXANAT:20081217] xref: HBA:4719 xref: NLXANAT:20081217 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028921 name: paravermic lobule IX namespace: uberon synonym: "paravermic lobule ix" EXACT HUMAN_PREFERRED [NLXANAT:20081218] synonym: "ventralis" RELATED [NLXANAT:20081218] xref: HBA:4728 xref: NLXANAT:20081218 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028922 name: paravermic lobule V namespace: uberon synonym: "paravermic lobule v" EXACT HUMAN_PREFERRED [NLXANAT:20081219] xref: HBA:4720 xref: NLXANAT:20081219 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028923 name: paravermic lobule VI namespace: uberon synonym: "paravermic lobule vi" EXACT HUMAN_PREFERRED [NLXANAT:20081220] xref: HBA:4722 xref: NLXANAT:20081220 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028924 name: paravermic lobule VII namespace: uberon synonym: "paravermic lobule vii" EXACT HUMAN_PREFERRED [NLXANAT:20081221] xref: NLXANAT:20081221 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028925 name: paravermic lobule VIII namespace: uberon synonym: "paravermic lobule viii" EXACT HUMAN_PREFERRED [NLXANAT:20081222] xref: NLXANAT:20081222 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0029001 name: matrix compartment of caudate nucleus namespace: uberon def: "Matrix compartment located in the caudate nucleus." [NLXANAT:20090504] synonym: "matrix compartment of caudate nucleus" EXACT [NLXANAT:20090504] xref: NLXANAT:20090504 is_a: UBERON:0027368 ! matrix compartment relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0029002 name: matrix compartment of putamen namespace: uberon synonym: "matrix compartment of putamen" EXACT [NLXANAT:20090505] xref: NLXANAT:20090505 is_a: UBERON:0027368 ! matrix compartment relationship: part_of UBERON:0001874 ! putamen [Term] id: UBERON:0029004 name: striosomal part of caudate nucleus namespace: uberon synonym: "striosomal part of caudate nucleus" EXACT [NLXANAT:20090507] xref: NLXANAT:20090507 is_a: UBERON:0027371 ! striosome relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0029005 name: striosomal part of putamen namespace: uberon synonym: "striosomal part of putamen" EXACT [NLXANAT:20090508] xref: NLXANAT:20090508 is_a: UBERON:0027371 ! striosome relationship: part_of UBERON:0001874 ! putamen [Term] id: UBERON:0029009 name: granular cell layer of dorsal cochlear nucleus namespace: uberon synonym: "granular cell layer of dorsal cochlear nucleus" EXACT [NLXANAT:20090512] xref: NLXANAT:20090512 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002829 ! dorsal cochlear nucleus [Term] id: UBERON:0029503 name: sacral spinal cord gray matter namespace: uberon subset: human_reference_atlas synonym: "sacral spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1491] xref: BIRNLEX:1491 is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0005843 ! sacral spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0029538 name: sacral spinal cord lateral horn namespace: uberon subset: human_reference_atlas synonym: "sacral spinal cord intermediate horn" RELATED [BIRNLEX:1527] synonym: "sacral spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1527] xref: BIRNLEX:1527 is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0005843 ! sacral spinal cord relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0029626 name: cervical spinal cord gray commissure namespace: uberon subset: human_reference_atlas synonym: "cervical spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1614] xref: BIRNLEX:1614 is_a: UBERON:0014613 ! cervical spinal cord gray matter is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord relationship: part_of UBERON:0002726 ! cervical spinal cord relationship: part_of UBERON:0014613 ! cervical spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0029636 name: lumbar spinal cord gray matter namespace: uberon subset: human_reference_atlas synonym: "lumbar spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1624] xref: BIRNLEX:1624 is_a: UBERON:0002315 ! gray matter of spinal cord relationship: part_of UBERON:0002792 ! lumbar spinal cord property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0030276 name: lumbar spinal cord ventral horn namespace: uberon subset: human_reference_atlas synonym: "lumbar spinal cord anterior horn" RELATED [BIRNLEX:891] synonym: "lumbar spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:891] xref: BIRNLEX:891 is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0002792 ! lumbar spinal cord relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0030649 name: cytoarchitecture of entorhinal cortex namespace: uberon synonym: "cytoarchitecture of entorhinal cortex" EXACT HUMAN_PREFERRED [NLXANAT:20090703] xref: NLXANAT:20090703 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002728 ! entorhinal cortex [Term] id: UBERON:0031111 name: sacral spinal cord gray commissure namespace: uberon subset: human_reference_atlas synonym: "sacral spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1459] xref: BIRNLEX:1459 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord is_a: UBERON:0029503 ! sacral spinal cord gray matter relationship: part_of UBERON:0005843 ! sacral spinal cord relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0031906 name: lumbar spinal cord lateral horn namespace: uberon subset: human_reference_atlas synonym: "lumbar spinal cord intermediate horn" RELATED [BIRNLEX:877] synonym: "lumbar spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:877] xref: BIRNLEX:877 is_a: UBERON:0004676 ! spinal cord lateral horn relationship: part_of UBERON:0002792 ! lumbar spinal cord relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0032748 name: sacral spinal cord ventral horn namespace: uberon subset: human_reference_atlas synonym: "sacral spinal cord anterior horn" RELATED [BIRNLEX:1457] synonym: "sacral spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1457] xref: BIRNLEX:1457 is_a: UBERON:0002257 ! ventral horn of spinal cord relationship: part_of UBERON:0005843 ! sacral spinal cord relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0033483 name: lumbar spinal cord gray commissure namespace: uberon subset: human_reference_atlas synonym: "lumbar spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:802] xref: BIRNLEX:802 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord is_a: UBERON:0029636 ! lumbar spinal cord gray matter relationship: part_of UBERON:0002792 ! lumbar spinal cord relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0033939 name: sacral spinal cord dorsal horn namespace: uberon subset: human_reference_atlas synonym: "sacral spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1453] synonym: "sacral spinal cord posterior horn" RELATED [BIRNLEX:1453] xref: BIRNLEX:1453 is_a: UBERON:0002256 ! dorsal horn of spinal cord relationship: part_of UBERON:0005843 ! sacral spinal cord relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034670 name: palatal taste bud namespace: uberon def: "A taste bud that is located on the soft palate, in the roof of the mouth." [DOI:10.1523/JNEUROSCI.5142-05.2006, http://orcid.org/0000-0002-6601-2165] synonym: "taste bud of palate" EXACT [] is_a: UBERON:0034722 ! mouth roof taste bud relationship: part_of UBERON:0014453 ! gustatory epithelium of palate property_value: UBPROP:0000008 "In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006]" xsd:string [Term] id: UBERON:0034671 name: arcuate sulcus namespace: uberon def: "Composite sulcus of the frontal lobe of the macaque. Located on the dorsolateral surface, it consists of the superior ramus of the arcuate sulcus (macaque), the inferior ramus of the arcuate sulcus and the spur of the arcuate sulcus (macaque) (neuronames:2379)." [NLX:153910] synonym: "arcuate sulcus" RELATED [NeuroNames:2379] synonym: "inferior precentral sulcus (Walker)" RELATED [NeuroNames:2379] synonym: "sulcus arcuata" RELATED OMO:0003011 [NeuroNames:2379] synonym: "sulcus arcuatis" RELATED OMO:0003011 [NeuroNames:2379] synonym: "sulcus arcuatus" RELATED OMO:0003011 [NeuroNames:2379] xref: neuronames:2379 xref: NLX:153910 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe property_value: RO:0002175 NCBITaxon:9539 [Term] id: UBERON:0034672 name: lateral eminence of fourth ventricle namespace: uberon synonym: "area vestibularis" RELATED OMO:0003011 [NeuroNames:623] synonym: "lateral eminence of fourth ventricle" EXACT [FMA:78478] synonym: "vestibular area" BROAD [FMA:78478] xref: FMA:78478 xref: neuronames:623 relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0034673 name: amygdalohippocampal area namespace: uberon def: "A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala." [Wikipedia:Amygdalohippocampal_area] subset: human_reference_atlas synonym: "AHA" RELATED OMO:0003000 [DHBA:10377] synonym: "amygdalo-hippocampal area" RELATED [NeuroNames:2028] synonym: "amygdalohippocampal area" RELATED [NeuroNames:2028] synonym: "amygdalohippocampal transition area" RELATED [NeuroNames:2028] synonym: "area amygdalohippocampalis" RELATED OMO:0003011 [NeuroNames:2028] synonym: "area parahippocampalis" RELATED OMO:0003011 [Wikipedia:Amygdalohippocampal_area] synonym: "area periamygdalae caudalis ventralis" RELATED OMO:0003011 [NeuroNames:2028] synonym: "posterior amygdalar nucleus" RELATED [NeuroNames:2028] synonym: "posterior nucleus amygdala" RELATED [NeuroNames:2028] synonym: "posterior nucleus of the amygdala" RELATED [NeuroNames:2028] xref: DHBA:10377 xref: DMBA:15945 xref: EMAPA:35124 xref: FMA:77607 xref: HBA:4330 xref: MA:0002917 xref: neuronames:2028 xref: PBA:10135 xref: Wikipedia:Amygdalohippocampal_area is_a: UBERON:0005401 ! cerebral hemisphere gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001876 {source="EMAPA"} ! amygdala relationship: part_of UBERON:0006108 {source="DHBA"} ! corticomedial nuclear complex property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "All authors regard it as occupying the caudal third of the amygdala, which abuts the hippocampal formation. In the human ( Mai-1997 ) and the macaque ( Amaral-1992 ) it is located close to the medial surface of the temporal lobe; it is bounded internally by the posterior cortical amygdalar nucleus and the temporal horn of the lateral ventricle. In the rat ( Swanson-2004 ) and mouse ( Hof-2000 ) it is bounded largely by the posterior cortical amygdalar nucleus and the accessory basal nucleus (known as the basomedial nucleus of the amygdala in rodents); the stria terminalis separates it from the ventricle. According to some authors the amygdalohippocampal area extends anteriorly to occupy the caudal half of the amygdala. These authors divide the area into two or three parts, which in the human ( Olmos-2004 ), the rat ( Paxinos-2009b ), and the mouse ( Franklin-2008 ) are named on the basis of location: anterolateral, posterolateral and posteromedial parts. In the macaque ( Paxinos-2009a ) the rostral portion of the area is divided into two parts on the basis of cellular morphology: magnocellular and parvicellular parts. Some authors refer to the area in rodents as the 'posterior amygdalar nucleus' ( Swanson-2004; Hof-2000 ).[neuronames:2028]" xsd:string [Term] id: UBERON:0034674 name: sulcus of limbic lobe namespace: uberon synonym: "intralimbic sulcus" RELATED [NeuroNames:1314] synonym: "LLs" RELATED OMO:0003000 [HBA:9393] xref: HBA:9393 xref: neuronames:1314 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0034676 name: forceps major of corpus callosum namespace: uberon synonym: "ccs-ma" RELATED OMO:0003000 [DHBA:12025] synonym: "corpus callosum, forceps major" RELATED OMO:0003011 [NeuroNames:197] synonym: "corpus callosum, posterior forceps (Arnold)" RELATED [NeuroNames:197] synonym: "forceps major" EXACT [FMA:TA] synonym: "forceps major corporis callosi" RELATED OMO:0003011 [NeuroNames:197] synonym: "forceps major of corpus callosum" EXACT [FMA:61949] synonym: "forceps major of corpus callosum" RELATED [NeuroNames:197] synonym: "forceps major of the corpus callosum" RELATED [NeuroNames:197] synonym: "forceps occipitalis" EXACT [FMA:TA] synonym: "forceps occipitalis" RELATED OMO:0003011 [NeuroNames:197] synonym: "major forceps" EXACT [FMA:61949] synonym: "occipital forceps" EXACT [FMA:61949] synonym: "occipital forceps" RELATED [NeuroNames:197] synonym: "posterior forceps" EXACT [FMA:61949] synonym: "posterior forceps" RELATED [NeuroNames:197] synonym: "posterior forceps of corpus callosum" EXACT [FMA:61949] synonym: "posterior forceps of the corpus callosum" RELATED [NeuroNames:197] xref: DHBA:12025 xref: FMA:61949 xref: neuronames:197 xref: SCTID:369201007 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0015708 {source="DHBA"} ! splenium of the corpus callosum [Term] id: UBERON:0034678 name: forceps minor of corpus callosum namespace: uberon synonym: "anterior forceps" EXACT [FMA:61944] synonym: "anterior forceps" RELATED [NeuroNames:192] synonym: "anterior forceps of corpus callosum" EXACT [FMA:61944] synonym: "anterior forceps of the corpus callosum" RELATED [NeuroNames:192] synonym: "corpus callosum, anterior forceps" RELATED [NeuroNames:192] synonym: "corpus callosum, anterior forceps (Arnold)" RELATED [NeuroNames:192] synonym: "corpus callosum, forceps minor" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps frontalis" EXACT [FMA:TA] synonym: "forceps frontalis" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor" EXACT [FMA:TA] synonym: "forceps minor" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor corporis callosi" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor of corpus callosum" RELATED OMO:0003011 [NeuroNames:192] synonym: "forceps minor of the corpus callosum" RELATED [NeuroNames:192] synonym: "frontal forceps" EXACT [FMA:61944] synonym: "frontal forceps" RELATED [NeuroNames:192] synonym: "minor forceps" EXACT [FMA:61944] xref: DHBA:12024 xref: FMA:61944 xref: neuronames:192 xref: SCTID:369199005 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0002336 {source="FMA"} ! corpus callosum relationship: part_of UBERON:0015599 {source="DHBA"} ! genu of corpus callosum [Term] id: UBERON:0034705 name: developing neuroepithelium namespace: uberon def: "An embryonic or larval epithelium that is committed to form part of the nervous system." [AEO:0001008, AEO:JB] synonym: "embryonic neuroepithelium" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "neurepithelium" BROAD [BTO:0000314] synonym: "neuroepithelium" EXACT [AEO:0001008] xref: AEO:0001008 xref: BTO:0000314 xref: EHDAA2_RETIRED:0004654 xref: FMA:64807 relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0034706 name: proliferating neuroepithelium namespace: uberon def: "An epithelium that is undergoing proliferation to provide large numbers of neuronal cells." [AEO:0001009] xref: AEO:0001009 is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium [Term] id: UBERON:0034707 name: differentiating neuroepithelium namespace: uberon def: "A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells." [AEO:0001010] xref: AEO:0001010 is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium [Term] id: UBERON:0034708 name: cerebellum marginal layer namespace: uberon synonym: "marginal zone of cerebellum" EXACT [DHBA:12695] synonym: "MZCB" RELATED OMO:0003000 [DHBA:12695] xref: DHBA:12695 xref: EHDAA2:0001152 xref: EMAPA:17789 is_a: UBERON:0034709 ! hindbrain marginal layer relationship: part_of UBERON:0002037 ! cerebellum property_value: UBPROP:0000011 "In the cerebellum, some neuronal precursors enter the marginal zone to form clusters of neurons called nuclei[NBK10047]" xsd:string [Term] id: UBERON:0034709 name: hindbrain marginal layer namespace: uberon synonym: "marginal zone of hindbrain" EXACT [DHBA:12694] synonym: "MZH" RELATED OMO:0003000 [DHBA:12694] xref: DHBA:12694 xref: EMAPA:32916 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034710 name: spinal cord ventricular layer namespace: uberon synonym: "spinal cord lateral wall ventricular layer" EXACT [EHDAA2:0001267] xref: EHDAA2:0001267 xref: EMAPA:17585 is_a: UBERON:0004060 ! neural tube ventricular layer relationship: part_of UBERON:0006241 ! future spinal cord [Term] id: UBERON:0034711 name: cortical preplate namespace: uberon def: "The layer of the developing cerebral cortex that is formed from the first cohort of neurons to migrate out of the cortical ventricular zone; split by the second wave into marginal zone and subplate." [PMID:12626695] xref: EMAPA:35261 is_a: UBERON:0014950 ! layer of developing cerebral cortex [Term] id: UBERON:0034713 name: cranial neuron projection bundle namespace: uberon def: "Any of the cranial nerves, or their central nervous system analogs (the optic tract, the epiphyseal tract). These analogs are not true nerves, and are instead evaginated sensory afferents emanating from the brain." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] subset: human_reference_atlas synonym: "cranial nerve fiber bundle" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "cranial nerve fiber tract" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "cranial nerve or tract" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "neuron projection bundle from brain" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000122 ! neuron projection bundle property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034714 name: epiphyseal tract namespace: uberon def: "A cranial nerve fiber tract that innervates the parietal eye." [ISBN:0471888893] comment: This should be classified as an evaginated sensory afferents rather than cranial nerves, as they are part of the CNS[ISBN:0471888893] synonym: "epiphyseal nerve" RELATED [ISBN:0471888893] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0034715 name: pineal tract namespace: uberon def: "A cranial nerve fiber tract that innervates the pineal body." [ISBN:0471888893] comment: This should be classified as an evaginated sensory afferents rather than cranial nerves, as they are part of the CNS[ISBN:0471888893] synonym: "pineal nerve" RELATED [ISBN:0471888893] xref: FMA:77600 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0034714 ! epiphyseal tract [Term] id: UBERON:0034716 name: rostral epiphyseal tract namespace: uberon def: "The more rostral of the two branches of the epiphyseal tract." [ISBN:0471888893] synonym: "rostral epiphyseal nerve" RELATED [ISBN:0471888893] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle relationship: part_of UBERON:0034714 ! epiphyseal tract [Term] id: UBERON:0034717 name: integumental taste bud namespace: uberon def: "A taste bud that is located external to the digestive tube, on the head or body, as found in species such as goldfish." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] is_a: UBERON:0001727 ! taste bud [Term] id: UBERON:0034718 name: barbel taste bud namespace: uberon def: "A taste bud that is located on a barbel." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] is_a: UBERON:0034717 ! integumental taste bud [Term] id: UBERON:0034719 name: lip taste bud namespace: uberon def: "A taste bud that is located on a lip." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034720 name: head taste bud namespace: uberon def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0034717 ! integumental taste bud [Term] id: UBERON:0034721 name: pharyngeal taste bud namespace: uberon def: "A taste bud that is located in the pharynx." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:7778 [Term] id: UBERON:0034722 name: mouth roof taste bud namespace: uberon def: "A taste bud that is located on the roof of the mouth." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:7778 [Term] id: UBERON:0034723 name: fin taste bud namespace: uberon def: "A taste bud that is located on a fin." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034724 name: esophageal taste bud namespace: uberon def: "A taste bud that is located in the esophagus." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034725 name: pterygopalatine nerve namespace: uberon def: "The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube." [Wikipedia:Pharyngeal_nerve] synonym: "ganglionic branch of maxillary nerve to pterygopalatine ganglion" EXACT [FMA:52731] synonym: "pharyngeal nerve" RELATED [Wikipedia:Pharyngeal_nerve] synonym: "pterygopalatine nerve" EXACT [FMA:52731] synonym: "radix sensoria ganglii pterygopalatini" EXACT [FMA:TA] synonym: "sensory root of pterygopalatine ganglion" EXACT [FMA:52731] xref: FMA:52731 xref: SCTID:58267004 xref: Wikipedia:Pharyngeal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000377 ! maxillary nerve [Term] id: UBERON:0034726 name: trunk taste bud namespace: uberon def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0034717 ! integumental taste bud [Term] id: UBERON:0034728 name: autonomic nerve namespace: uberon def: "The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa." [Wikipedia:Autonomic_nerve] subset: human_reference_atlas synonym: "nervus visceralis" EXACT [FMA:5866] synonym: "visceral nerve" EXACT [FMA:5866] xref: EMAPA:37957 {source="MA:th"} xref: FMA:5866 xref: MESH:D017776 xref: SCTID:276145003 xref: Wikipedia:Autonomic_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0036264 ! zygomaticotemporal nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034729 name: sympathetic nerve namespace: uberon subset: human_reference_atlas xref: EMAPA:37958 {source="MA:th"} xref: SCTID:181098007 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000013 ! sympathetic nervous system property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034730 name: olfactory tract linking bulb to ipsilateral dorsal telencephalon namespace: uberon synonym: "lateral olfactory tract" RELATED [ZFA:0000229] synonym: "tractus olfactorius lateralis" RELATED [ZFA:0000229] xref: TAO:0000229 xref: ZFA:0000229 is_a: UBERON:0002265 ! olfactory tract property_value: UBPROP:0000001 "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain." xsd:string {source="ZFA:0000229"} [Term] id: UBERON:0034734 name: medial olfactory stria namespace: uberon def: "The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance." [Wikipedia:Medial_olfactory_stria] synonym: "medial olfactory tract" RELATED [NeuroNames:2278] synonym: "stria olfactoria medialis" EXACT OMO:0003011 [FMA:77627, FMA:TA] synonym: "tractus olfactorius medialis" RELATED OMO:0003011 [NeuroNames:2278] xref: DHBA:12076 xref: DMBA:17779 xref: FMA:77627 xref: HBA:265505518 xref: neuronames:2278 xref: SCTID:369105009 xref: Wikipedia:Medial_olfactory_stria is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis [Term] id: UBERON:0034743 name: inferior longitudinal fasciculus namespace: uberon def: "The inferior longitudinal fasciculus connects the temporal lobe and occipital lobe, running along the lateral walls of the inferior and posterior cornua of the lateral ventricle. The existence of this fasciculus independent from the occipitotemporal fasciculus has been questioned for the human being, such that it has been proposed that the term inferior longitudinal fasciculus be replaced by the term 'occipitotemporal projection'." [Wikipedia:Inferior_longitudinal_fasciculus] synonym: "external sagittal stratum" RELATED [NeuroNames:1443] synonym: "fasciculus fronto-occipitalis inferior" RELATED OMO:0003011 [NeuroNames:1443] synonym: "fasciculus longitudinalis inferior" RELATED OMO:0003011 [NeuroNames:1443] synonym: "ilf" RELATED OMO:0003000 [DHBA:10580] xref: DHBA:10580 xref: FMA:77632 xref: HBA:9260 xref: neuronames:1443 xref: NeuroNamesCNID:538 xref: SCTID:369085008 xref: Wikipedia:Inferior_longitudinal_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034745 name: radiation of thalamus namespace: uberon synonym: "thalamic radiation" RELATED [FMA:76975] synonym: "thalamus radiation" EXACT [FMA:76975] xref: FMA:76975 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0022259 ! white matter radiation relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus property_value: IAO:0000116 "todo - add all" xsd:string [Term] id: UBERON:0034746 name: anterior thalamic radiation namespace: uberon synonym: "anterior radiation of thalamus" EXACT [FMA:76976] synonym: "anterior thalamic radiation" EXACT [FMA:76976] synonym: "anterior thalamic radiation" RELATED [NeuroNames:1726] synonym: "anterior thalamic radiations" RELATED [NeuroNames:1726] synonym: "athf" RELATED OMO:0003000 [DHBA:12043] synonym: "radiatio thalami anterior" EXACT [FMA:TA] synonym: "radiationes thalamicae anteriores" RELATED OMO:0003011 [NeuroNames:1726] xref: DHBA:12043 xref: FMA:76976 xref: neuronames:1726 is_a: UBERON:0022260 ! radiation of cerebral hemisphere is_a: UBERON:0034745 ! radiation of thalamus relationship: part_of UBERON:0014526 {source="DHBA"} ! anterior limb of internal capsule [Term] id: UBERON:0034747 name: posterior thalamic radiation namespace: uberon synonym: "posterior thalamic radiation" EXACT [FMA:76982] synonym: "posterior thalamic radiation" RELATED [NeuroNames:2083] synonym: "posterior thalamic radiations" RELATED [NeuroNames:2083] synonym: "pthr" RELATED OMO:0003000 [DHBA:12053] synonym: "radiatio posterior thalami" EXACT [FMA:TA] synonym: "radiatio thalamica posterior" EXACT [FMA:TA] synonym: "radiationes thalamicae posteriores" RELATED OMO:0003011 [NeuroNames:2083] xref: DHBA:12053 xref: FMA:76982 xref: neuronames:2083 is_a: UBERON:0022260 ! radiation of cerebral hemisphere is_a: UBERON:0034745 ! radiation of thalamus relationship: part_of UBERON:0034749 ! retrolenticular part of internal capsule [Term] id: UBERON:0034749 name: retrolenticular part of internal capsule namespace: uberon synonym: "pars retrolenticularis capsulae internae" RELATED OMO:0003011 [NeuroNames:203] synonym: "pars retrolentiformis" EXACT [FMA:TA] synonym: "pars retrolentiformis (capsulae internae)" RELATED OMO:0003011 [NeuroNames:203] synonym: "postlenticular portion of internal capsule" EXACT [FMA:61957] synonym: "postlenticular portion of internal capsule" RELATED [NeuroNames:203] synonym: "retrolenticular limb" EXACT [FMA:61957] synonym: "retrolenticular part of internal capsule" RELATED [NeuroNames:203] synonym: "retrolenticular part of the internal capsule" RELATED [NeuroNames:203] synonym: "retrolentiform limb" EXACT [FMA:61957] xref: DHBA:12052 xref: FMA:61957 xref: neuronames:203 xref: SCTID:362363008 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0014527 {source="DHBA", source="FMA"} ! posterior limb of internal capsule [Term] id: UBERON:0034750 name: visual association cortex namespace: uberon def: "Part of cortex considered to function in higher level visual functions." [NLX:143553] synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: NLX:143553 is_a: UBERON:0035015 ! association cortex is_a: UBERON:8440011 ! cortical visual area relationship: part_of UBERON:0000411 ! visual cortex [Term] id: UBERON:0034751 name: primary auditory cortex namespace: uberon def: "The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] synonym: "A1C" RELATED OMO:0003000 [DHBA:10236] synonym: "auditory complex area A1" RELATED [NCBIBook:NBK10900] synonym: "auditory core region" RELATED [NeuroNames:1354] synonym: "primary auditory area" RELATED [NeuroNames:1354] synonym: "primary auditory cortex" RELATED [NeuroNames:1354] synonym: "primary auditory cortex (core)" EXACT [DHBA:10236] xref: DHBA:10236 xref: FMA:272953 xref: neuronames:1354 xref: Wikipedia:Primary_auditory_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex [Term] id: UBERON:0034752 name: secondary auditory cortex namespace: uberon def: "The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] synonym: "A42" RELATED OMO:0003000 [DHBA:10239] synonym: "belt area of auditory complex" RELATED [NCBIBook:NBK10900] synonym: "belt auditory area" EXACT [FMA:272944] synonym: "peripheral auditory cortex" EXACT [FMA:272944] synonym: "second auditory area" EXACT [NeuroNames:1557] synonym: "second auditory area" RELATED [NeuroNames:1557] synonym: "second auditory cortex" RELATED [NeuroNames:1557] synonym: "secondary auditory cortex (belt, area 42)" EXACT [DHBA:10239] xref: DHBA:10239 xref: FMA:272944 xref: neuronames:1557 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex [Term] id: UBERON:0034753 name: inferior occipitofrontal fasciculus namespace: uberon synonym: "fasciculus occipito-frontalis inferior" RELATED OMO:0003011 [NeuroNames:1442] synonym: "fasciculus occipitofrontalis inferior" RELATED OMO:0003011 [NeuroNames:1442] synonym: "inferior fronto-occipital fasciculus" RELATED [NeuroNames:1442] synonym: "inferior occipitofrontal fasciculus" EXACT [DHBA:12070] synonym: "inferior occipitofrontal fasciculus" RELATED [NeuroNames:1442] xref: DHBA:12070 xref: FMA:77633 xref: neuronames:1442 xref: SCTID:369087000 is_a: UBERON:0034754 ! occipitofrontal fasciculus [Term] id: UBERON:0034754 name: occipitofrontal fasciculus namespace: uberon def: "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua." [Wikipedia:Occipitofrontal_fasciculus] synonym: "inferior occipitofrontal fasciculus" RELATED [Wikipedia:Occipitofrontal_fasciculus] synonym: "off" RELATED OMO:0003000 [DHBA:10588] xref: DHBA:10588 xref: HBA:9269 xref: Wikipedia:Occipitofrontal_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034763 name: hindbrain commissure namespace: uberon def: "Any commissure within the hindbrain." [http://orcid.org/0000-0002-6601-2165, ZFIN:ZDB-PUB-090417-11] xref: TAO:0002199 xref: ZFA:0001692 is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034771 name: ventral commissural nucleus of spinal cord namespace: uberon def: "The term commissural nucleus of the spinal cord refers to a group of cells in the medial portion of the anterior gray column; it corresponds roughly to lamina VIII." [NeuroNames:1658] synonym: "commissural nucleus of spinal cord" BROAD [FMA:73900] synonym: "commissural nucleus of spinal cord" EXACT [FMA:73900] synonym: "commissural nucleus of spinal cord" RELATED [FMA:73900] synonym: "lamina VIII" RELATED [] xref: FMA:73900 xref: neuronames:1658 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002257 ! ventral horn of spinal cord [Term] id: UBERON:0034773 name: uncus of parahippocampal gyrus namespace: uberon def: "The anterior extremity of the Parahippocampal gyrus is recurved in the form of a hook, the uncus, which is separated from the apex of the temporal lobe by a slight fissure, the incisura temporalis. Although superficially continuous with the hippocampal gyrus, the uncus forms morphologically a part of the rhinencephalon. The term uncus was coined by Felix Vicq dbAzyr (1748b1794)." [Wikipedia:Uncus] subset: human_reference_atlas synonym: "pyriform area (Crosby)" RELATED [NeuroNames:40] synonym: "uncus" RELATED OMO:0003011 [NeuroNames:40] synonym: "uncus hippocampi" EXACT OMO:0003011 [NeuroNames:40] xref: DHBA:12165 xref: FMA:74884 xref: NCIT:C33831 xref: neuronames:40 xref: SCTID:279213004 xref: Wikipedia:Uncus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002973 {source="DHBA"} ! parahippocampal gyrus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034774 name: uncal CA1 namespace: uberon synonym: "CA1U" RELATED OMO:0003000 [DHBA:266441267] xref: DHBA:266441267 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034775 name: uncal CA2 namespace: uberon synonym: "CA2U" RELATED OMO:0003000 [DHBA:266441311] xref: DHBA:266441311 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034776 name: uncal CA3 namespace: uberon synonym: "CA3U" RELATED OMO:0003000 [DHBA:266441355] xref: DHBA:266441355 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034777 name: rostral CA1 namespace: uberon synonym: "CA1R" RELATED OMO:0003000 [DHBA:11275] xref: DHBA:11275 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034778 name: rostral CA2 namespace: uberon synonym: "CA2R" RELATED OMO:0003000 [DHBA:11285] xref: DHBA:11285 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034779 name: rostral CA3 namespace: uberon synonym: "CA3R" RELATED OMO:0003000 [DHBA:11295] xref: DHBA:11295 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034780 name: caudal CA1 namespace: uberon synonym: "CA1C" RELATED OMO:0003000 [DHBA:11280] xref: DHBA:11280 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034781 name: caudal CA2 namespace: uberon synonym: "CA2C" RELATED OMO:0003000 [DHBA:11290] xref: DHBA:11290 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034782 name: caudal CA3 namespace: uberon synonym: "CA3C" RELATED OMO:0003000 [DHBA:11301] xref: DHBA:11301 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034798 name: stratum lacunosum-moleculare of caudal CA1 namespace: uberon synonym: "CA1Cslm" RELATED OMO:0003000 [DHBA:11281] xref: DHBA:11281 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034799 name: stratum radiatum of caudal CA1 namespace: uberon synonym: "CA1Csr" RELATED OMO:0003000 [DHBA:11282] xref: DHBA:11282 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034800 name: stratum pyramidale of caudal CA1 namespace: uberon synonym: "CA1Csp" RELATED OMO:0003000 [DHBA:11283] xref: DHBA:11283 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034801 name: stratum oriens of caudal CA1 namespace: uberon synonym: "CA1Cso" RELATED OMO:0003000 [DHBA:11284] xref: DHBA:11284 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034803 name: stratum lacunosum-moleculare of caudal CA2 namespace: uberon synonym: "CA2Cslm" RELATED OMO:0003000 [DHBA:11291] xref: DHBA:11291 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034804 name: stratum radiatum of caudal CA2 namespace: uberon synonym: "CA2Csr" RELATED OMO:0003000 [DHBA:11292] xref: DHBA:11292 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034805 name: stratum pyramidale of caudal CA2 namespace: uberon synonym: "CA2Csp" RELATED OMO:0003000 [DHBA:11293] xref: DHBA:11293 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034806 name: stratum oriens of caudal CA2 namespace: uberon synonym: "CA2Cso" RELATED OMO:0003000 [DHBA:11294] xref: DHBA:11294 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034808 name: stratum lacunosum-moleculare of caudal CA3 namespace: uberon synonym: "CA3Cslm" RELATED OMO:0003000 [DHBA:11302] xref: DHBA:11302 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034809 name: stratum radiatum of caudal CA3 namespace: uberon synonym: "CA3Csr" RELATED OMO:0003000 [DHBA:11303] xref: DHBA:11303 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034810 name: stratum lucidum of caudal CA3 namespace: uberon synonym: "CA3Csl" RELATED OMO:0003000 [DHBA:11304] xref: DHBA:11304 is_a: UBERON:0014560 ! CA3 stratum lucidum relationship: part_of UBERON:0007637 ! hippocampus stratum lucidum relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034811 name: stratum pyramidale of caudal CA3 namespace: uberon synonym: "CA3Csp" RELATED OMO:0003000 [DHBA:11305] xref: DHBA:11305 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034812 name: stratum oriens of caudal CA3 namespace: uberon synonym: "CA3Cso" RELATED OMO:0003000 [DHBA:11306] xref: DHBA:11306 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034828 name: stratum lacunosum-moleculare of rostral CA1 namespace: uberon synonym: "CA1Rslm" RELATED OMO:0003000 [DHBA:11276] xref: DHBA:11276 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034829 name: stratum radiatum of rostral CA1 namespace: uberon synonym: "CA1Rsr" RELATED OMO:0003000 [DHBA:11277] xref: DHBA:11277 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034830 name: stratum pyramidale of rostral CA1 namespace: uberon synonym: "CA1Rsp" RELATED OMO:0003000 [DHBA:11278] xref: DHBA:11278 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034831 name: stratum oriens of rostral CA1 namespace: uberon synonym: "CA1Rso" RELATED OMO:0003000 [DHBA:11279] xref: DHBA:11279 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034833 name: stratum lacunosum-moleculare of rostral CA2 namespace: uberon synonym: "CA2Rslm" RELATED OMO:0003000 [DHBA:11286] xref: DHBA:11286 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034834 name: stratum radiatum of rostral CA2 namespace: uberon synonym: "CA2Rsr" RELATED OMO:0003000 [DHBA:11287] xref: DHBA:11287 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034835 name: stratum pyramidale of rostral CA2 namespace: uberon synonym: "CA2Rsp" RELATED OMO:0003000 [DHBA:11288] xref: DHBA:11288 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034836 name: stratum oriens of rostral CA2 namespace: uberon synonym: "CA2Rso" RELATED OMO:0003000 [DHBA:11289] xref: DHBA:11289 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034838 name: stratum lacunosum-moleculare of rostral CA3 namespace: uberon synonym: "CA3Rslm" RELATED OMO:0003000 [DHBA:11296] xref: DHBA:11296 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034839 name: stratum radiatum of rostral CA3 namespace: uberon synonym: "CA3Rsr" RELATED OMO:0003000 [DHBA:11297] xref: DHBA:11297 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034840 name: stratum lucidum of rostral CA3 namespace: uberon synonym: "CA3Rsl" RELATED OMO:0003000 [DHBA:11298] xref: DHBA:11298 is_a: UBERON:0014560 ! CA3 stratum lucidum relationship: part_of UBERON:0007637 ! hippocampus stratum lucidum relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034841 name: stratum pyramidale of rostral CA3 namespace: uberon synonym: "CA3Rsp" RELATED OMO:0003000 [DHBA:11299] xref: DHBA:11299 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034842 name: stratum oriens of rostral CA3 namespace: uberon synonym: "CA3Rso" RELATED OMO:0003000 [DHBA:11300] xref: DHBA:11300 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034858 name: stratum lacunosum-moleculare of uncal CA1 namespace: uberon synonym: "CA1Uslm" RELATED OMO:0003000 [DHBA:266441271] xref: DHBA:266441271 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034859 name: stratum radiatum of uncal CA1 namespace: uberon synonym: "CA1Usr" RELATED OMO:0003000 [DHBA:266441283] xref: DHBA:266441283 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034860 name: stratum pyramidale of uncal CA1 namespace: uberon synonym: "CA1Usp" RELATED OMO:0003000 [DHBA:266441287] xref: DHBA:266441287 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034861 name: stratum oriens of uncal CA1 namespace: uberon synonym: "CA1Uso" RELATED OMO:0003000 [DHBA:266441291] xref: DHBA:266441291 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034863 name: stratum lacunosum-moleculare of uncal CA2 namespace: uberon synonym: "CA2Uslm" RELATED OMO:0003000 [DHBA:266441315] xref: DHBA:266441315 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034864 name: stratum radiatum of uncal CA2 namespace: uberon synonym: "CA2Usr" RELATED OMO:0003000 [DHBA:266441327] xref: DHBA:266441327 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034865 name: stratum pyramidale of uncal CA2 namespace: uberon synonym: "CA2Usp" RELATED OMO:0003000 [DHBA:266441331] xref: DHBA:266441331 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034866 name: stratum oriens of uncal CA2 namespace: uberon synonym: "CA2Uso" RELATED OMO:0003000 [DHBA:266441335] xref: DHBA:266441335 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034868 name: stratum lacunosum-moleculare of uncal CA3 namespace: uberon synonym: "CA3Uslm" RELATED OMO:0003000 [DHBA:266441359] xref: DHBA:266441359 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034869 name: stratum radiatum of uncal CA3 namespace: uberon synonym: "CA3Usr" RELATED OMO:0003000 [DHBA:266441371] xref: DHBA:266441371 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034870 name: stratum lucidum of uncal CA3 namespace: uberon synonym: "CA3Usl" RELATED OMO:0003000 [DHBA:266441375] xref: DHBA:266441375 is_a: UBERON:0014560 ! CA3 stratum lucidum relationship: part_of UBERON:0007637 ! hippocampus stratum lucidum relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034871 name: stratum pyramidale of uncal CA3 namespace: uberon synonym: "CA3Usp" RELATED OMO:0003000 [DHBA:266441379] xref: DHBA:266441379 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034872 name: stratum oriens of uncal CA3 namespace: uberon synonym: "CA3Uso" RELATED OMO:0003000 [DHBA:266441383] xref: DHBA:266441383 is_a: UBERON:0014567 ! layer of hippocampal field relationship: part_of UBERON:0005371 ! hippocampus stratum oriens relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034876 name: future neurohypophysis namespace: uberon def: "The outgrowth of neuroectoderm located on the floor of the embryonic hypothalamus that gives rise to the neurohypophysis (posterior lobe) of the pituitary gland." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1930/, MP:0013339] synonym: "neurohypohysial region" RELATED [EHDAA2:0004434] synonym: "neurohypophyseal bud" RELATED [MP:0013339] xref: EHDAA2:0004434 xref: EMAPA:16647 relationship: part_of UBERON:0001894 {source="EMAPA"} ! diencephalon [Term] id: UBERON:0034888 name: primary motor cortex layer 1 namespace: uberon synonym: "primary motor cortex lamina 1" RELATED [NLX:152661] synonym: "primary motor cortex lamina I" RELATED [NLX:152661] xref: NLX:152661 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer relationship: part_of UBERON:0001384 {source="NIFSTD"} ! primary motor cortex relationship: part_of UBERON:0005390 {source="NIFSTD"} ! cortical layer I [Term] id: UBERON:0034889 name: posterior parietal cortex namespace: uberon def: "The posterior parietal cortex is a portion of the parietal lobe which manipulates mental images, and integrates sensory and motor portions of the brain. Some sources say that it consists of Brodmann area 5 and Brodmann area 7. Other sources say it is only area 7." [Wikipedia:Posterior_parietal_cortex] synonym: "PoPC" RELATED OMO:0003000 [DHBA:10214] xref: DHBA:10214 xref: Wikipedia:Posterior_parietal_cortex is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0016530 {source="DHBA"} ! parietal cortex [Term] id: UBERON:0034891 name: insular cortex namespace: uberon subset: human_reference_atlas synonym: "cortex of insula" EXACT [FMA:242223] synonym: "gray matter of insula" RELATED [FMA:242223] synonym: "ICx" RELATED OMO:0003000 [DHBA:10288] synonym: "iNS" BROAD OMO:0003000 [FMA:242223, FMA:CMA] synonym: "insular neocortex" EXACT [DHBA:10288] xref: BM:Tel-Cx-Ins xref: DHBA:10288 xref: DMBA:16058 xref: EMAPA:35432 xref: FMA:242223 xref: MA:0000909 xref: SCTID:369221008 is_a: UBERON:0016529 ! cortex of cerebral lobe relationship: part_of UBERON:0002022 ! insula property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034892 name: granular insular cortex namespace: uberon def: "Granular region of the insular cortex." [http://orcid.org/0000-0002-6601-2165] synonym: "area Ig of Mesulam" RELATED [NeuroNames:1192] synonym: "cortex insularis granularis" RELATED OMO:0003011 [NeuroNames:1192] synonym: "granular domain" RELATED [NeuroNames:1192] synonym: "granular insula" EXACT [NeuroNames:1192] synonym: "granular insula" RELATED [NeuroNames:1192] synonym: "granular insular area" RELATED [NeuroNames:1192] synonym: "granular insular cortex" RELATED [NeuroNames:1192] synonym: "granular-isocortical insula" RELATED [NeuroNames:1192] synonym: "insular isocortical belt" RELATED [NeuroNames:1192] synonym: "visceral area" RELATED [NeuroNames:1192] xref: BTO:0004341 xref: DHBA:10290 xref: neuronames:1192 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034891 ! insular cortex [Term] id: UBERON:0034893 name: agranular insular cortex namespace: uberon def: "Agranular region of the insular cortex." [http://orcid.org/0000-0002-6601-2165] synonym: "cortex insularis dysgranularis" RELATED OMO:0003011 [NeuroNames:1780] synonym: "dysgranular insula" RELATED [NeuroNames:1780] synonym: "dysgranular insular area" RELATED [NeuroNames:1780] synonym: "dysgranular insular cortex" EXACT [DHBA:10289] synonym: "dysgranular insular cortex" RELATED [NeuroNames:1780] synonym: "gustatory area" RELATED [NeuroNames:1780] synonym: "gustatory cortex" RELATED [NeuroNames:1780] xref: BTO:0004342 xref: DHBA:10289 xref: DHBA:10328 xref: neuronames:1780 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034891 ! insular cortex [Term] id: UBERON:0034894 name: lateral nucleus of stria terminalis namespace: uberon synonym: "BSTL" RELATED OMO:0003000 [NLX:54921] synonym: "lateral bed nucleus of stria terminalis" RELATED [NLX:54921] synonym: "lateral bed nucleus of the stria terminalis" RELATED [NLX:54921] synonym: "lateral subdivision of BNST" EXACT [DHBA:10386] xref: DHBA:10386 xref: NLX:54921 xref: NLX:60319 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] id: UBERON:0034895 name: medial nucleus of stria terminalis namespace: uberon synonym: "BSTM" RELATED OMO:0003000 [NLX:80623] synonym: "medial bed nucleus of stria terminalis" RELATED [NLX:80623] synonym: "medial bed nucleus of the stria terminalis" RELATED [NLX:80623] synonym: "medial subdivision of BNST" EXACT [DHBA:10385] xref: DHBA:10385 xref: NLX:80623 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] id: UBERON:0034896 name: ansa peduncularis namespace: uberon synonym: "ansa peduncularis in thalamo" EXACT [FMA:TA] synonym: "ansa peduncularis in thalamus" EXACT [FMA:62071] synonym: "AP" RELATED OMO:0003000 [DHBA:266441591] synonym: "peduncular loop" EXACT [FMA:62071] xref: DHBA:266441591 xref: FMA:62071 xref: MBA:892 xref: neuronames:445 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001900 {source="FMA"} ! ventral thalamus relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034901 name: cervical sympathetic nerve trunk namespace: uberon def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. These emerging postganglionic nerves synapse with preganglionic nerves from the thoracic spinal cord. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things." [Wikipedia:Cervical_ganglia] synonym: "cervical part of sympathetic trunk" EXACT [FMA:6261] synonym: "cervical sympathetic chain" EXACT [FMA:6261] synonym: "cervical sympathetic trunk" EXACT [FMA:6261] xref: FMA:6261 xref: SCTID:280533000 xref: Wikipedia:Cervical_ganglia is_a: UBERON:0004295 ! sympathetic nerve trunk [Term] id: UBERON:0034902 name: sacral sympathetic nerve trunk namespace: uberon synonym: "pelvic sympathetic nerve trunk" RELATED [MA:0001164] synonym: "pelvic sympathetic trunk" RELATED [] synonym: "sacral part of sympathetic trunk" EXACT [FMA:6264] synonym: "sacral sympathetic chain" EXACT [FMA:6264] synonym: "sacral sympathetic trunk" EXACT [FMA:6264] xref: EMAPA:37656 {source="MA:th"} xref: FMA:6264 xref: MA:0001164 is_a: UBERON:0004295 ! sympathetic nerve trunk [Term] id: UBERON:0034907 name: pineal parenchyma namespace: uberon def: "Parenchymal tissue that forms the pineal gland." [http://orcid.org/0000-0002-6601-2165] xref: NCIT:C41834 xref: UMLS:C1519088 is_a: UBERON:0005158 ! parenchyma of central nervous system relationship: part_of UBERON:0001905 ! pineal body [Term] id: UBERON:0034910 name: medial pretectal nucleus namespace: uberon synonym: "medial pretectal area" RELATED [NeuroNames:1176] synonym: "medial pretectal nucleus" RELATED [NeuroNames:1176] synonym: "MPT" RELATED OMO:0003000 [DHBA:12184, DMBA:16585] xref: DHBA:12184 xref: DMBA:16585 xref: neuronames:1176 is_a: UBERON:0011214 ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0034918 name: anterior pretectal nucleus namespace: uberon synonym: "anterior (ventral /principal) pretectal nucleus" EXACT [DHBA:12187] synonym: "anterior pretectal nucleus" RELATED [NeuroNames:1116] xref: DHBA:12187 xref: EMAPA:37920 {source="MA:th"} xref: neuronames:1116 xref: NLX:144456 is_a: UBERON:0011214 ! nucleus of midbrain tectum is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0001944 ! pretectal region property_value: IAO:0000116 "consider merging with olivary; however, Butler and Hodos treat as distinct within Eutherians" xsd:string [Term] id: UBERON:0034931 name: perforant path namespace: uberon def: "A pathway of fibers originating in the lateral part of the entorhinal area, perforating the subiculum of the hippocampus, and running into the stratum moleculare of the hippocampus, where these fibers synapse with others that go to the dentate gyrus. (Dorland, 28th ed)." [MESH:A08.612.600] synonym: "perf" RELATED OMO:0003000 [DHBA:12080] synonym: "perforant path" RELATED [MESH:A08.612.600] synonym: "perforant pathway" RELATED [MESH:A08.612.600] synonym: "perforating fasciculus" RELATED [MESH:A08.612.600] synonym: "tractus perforans" RELATED OMO:0003011 [Wikipedia:Perforant_path] xref: DHBA:12080 xref: HBA:265505250 xref: MBA:713 xref: MESH:D019580 xref: NCIT:C13084 xref: neuronames:2686 xref: UMLS:C0524810 xref: Wikipedia:Perforant_path is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0034942 name: vibrissal follicle-sinus complex namespace: uberon def: "A sensory receptor of the mammalian integument system that consist of a blood sinus plus follicle, and sometimes concentric rings of epidermal tissue." [PMID:16342212] synonym: "F-SC" RELATED OMO:0003000 [] is_a: UBERON:0012451 ! sensory receptor [Term] id: UBERON:0034943 name: saccus vasculosus namespace: uberon def: "A circumventricular organ of the hypothalamus of many jawed fishes, protruding from the caudal infundibular wall. It is a vascularized neuroepithelium that consists of coronet cells, cerebrospinal fluid-contacting neurons and supporting cells." [GOC:mr, https://github.com/obophenotype/uberon/issues/662, PMID:23820554, PMID:4115676] is_a: UBERON:0005408 {source="GOC:mr"} ! circumventricular organ relationship: part_of UBERON:0001898 ! hypothalamus property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cerivs property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/michaelerice property_value: RO:0002161 NCBITaxon:32523 property_value: RO:0002175 NCBITaxon:8022 {source="PMID:4115676"} property_value: UBPROP:0000009 "Although its function remains hypothetical, it may contain sensory receptors for depth chemical detection. Other probable functions are osmoregulation ionic transport skeletal growth and tooth regeneration, although other homeostatic functions are not excluded" xsd:string property_value: UBPROP:0000009 "response to photoperiodic signals[PMID:23820554]" xsd:string property_value: UBPROP:0000009 "seasonal receptor[PMID:23820554]" xsd:string [Term] id: UBERON:0034968 name: sagittal sulcus namespace: uberon def: "A sulcus that lies within the longitudinal fissure." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Sagittal_sulcus] xref: Wikipedia:Sagittal_sulcus is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0034984 name: nerve to quadratus femoris namespace: uberon def: "The nerve to quadratus femoris is a nerve that provides innervation to the quadratus femoris and gemellus inferior muscles." [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to quadratus femoris" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris and gemellus inferior" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris muscle" RELATED [Wikipedia:Nerve_to_quadratus_femoris] xref: FMA:78705 xref: SCTID:280351000 xref: Wikipedia:Nerve_to_quadratus_femoris is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0034986 ! sacral nerve plexus [Term] id: UBERON:0034986 name: sacral nerve plexus namespace: uberon def: "A nerve plexus which provides motor and sensory nerves for the posterior thigh, most of the lower leg, the entire foot, and part of the pelvis." [Wikipedia:Sacral_plexus] subset: human_reference_atlas synonym: "plexus sacralis" EXACT [FMA:TA] synonym: "plexus sacralis" RELATED [Wikipedia:Sacral_plexus] synonym: "sacral plexus" EXACT [FMA:5909] xref: FMA:5909 xref: NCIT:C12846 xref: SCTID:181056009 xref: Wikipedia:Sacral_plexus is_a: UBERON:0001815 ! lumbosacral nerve plexus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034987 name: lumbar nerve plexus namespace: uberon def: "A nervous plexus in the lumbar region of the body which forms part of the lumbosacral plexus." [Wikipedia:Lumbar_plexus] subset: human_reference_atlas synonym: "femoral plexus" RELATED [Wikipedia:Lumbar_plexus] synonym: "lumbar plexus" EXACT [FMA:5908] synonym: "plexus lumbalis" EXACT [FMA:TA] synonym: "plexus lumbalis" RELATED [Wikipedia:Lumbar_plexus] xref: FMA:5908 xref: NCIT:C12845 xref: SCTID:302506006 xref: Wikipedia:Lumbar_plexus is_a: UBERON:0001815 ! lumbosacral nerve plexus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034989 name: amygdalopiriform transition area namespace: uberon synonym: "amygdalopiriform TA" RELATED [NeuroNames:1971] synonym: "amygdalopiriform transition area" RELATED [NeuroNames:1971] synonym: "postpiriform transition area" EXACT [NeuroNames:1971] synonym: "postpiriform transition area" RELATED [NeuroNames:1971] xref: EMAPA:35125 xref: FMA:77608 xref: MA:0002918 xref: neuronames:1971 xref: PBA:10140 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001876 {source="MA"} ! amygdala [Term] id: UBERON:0034991 name: anterior cortical amygdaloid nucleus namespace: uberon subset: human_reference_atlas synonym: "anterior cortical amygdaloid area" RELATED [DMBA:16000] xref: DMBA:16000 xref: EMAPA:35128 xref: MA:0002920 xref: neuronames:2639 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 {source="EMAPA"} ! amygdala relationship: part_of UBERON:0014741 {source="DMBA"} ! lateral pallium property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034993 name: basal ventral medial nucleus of thalamus namespace: uberon synonym: "basal ventral medial thalamic nucleus" EXACT [EMAPA:35165] xref: EMAPA:35165 xref: FMA:84344 xref: HBA:4427 is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus is_a: UBERON:0015233 ! nucleus of dorsal thalamus is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001925 {source="HBA"} ! ventral lateral nucleus of thalamus relationship: part_of UBERON:0002739 {source="EMAPA"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0034994 name: hindbrain cortical intermediate zone namespace: uberon synonym: "hindbrain mantle layer" EXACT [EMAPA:32917] xref: DHBA:12682 xref: EMAPA:32917 is_a: UBERON:0004040 ! cortical intermediate zone relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034999 name: posterolateral cortical amygdaloid nucleus namespace: uberon synonym: "cortical amygdalar nucleus, posterior part, lateral zone" RELATED [NeuroNames:3249] synonym: "PLCo" RELATED OMO:0003000 [DMBA:15999] synonym: "posterolateral cortical amygdalar nucleus" RELATED [NeuroNames:3249] synonym: "posterolateral cortical amygdaloid area" EXACT [DMBA:15999] synonym: "posterolateral cortical amygdaloid area" RELATED [NeuroNames:3249] synonym: "posterolateral part of the cortical nucleus" RELATED [NeuroNames:3249] xref: DMBA:15999 xref: EMAPA:35699 xref: MA:0002929 xref: neuronames:3249 is_a: UBERON:0002308 {source="EMAPA"} ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucleus [Term] id: UBERON:0035001 name: posteromedial cortical amygdaloid nucleus namespace: uberon synonym: "cortical amygdalar nucleus, posterior part, medial zone" RELATED [NeuroNames:3250] synonym: "PMCo" RELATED OMO:0003000 [DMBA:15950] synonym: "posteromedial cortical amygdalar nucleus" RELATED [NeuroNames:3250] synonym: "posteromedial cortical amygdaloid nucleus" RELATED [NeuroNames:3250] synonym: "posteromedial part of the cortical nucleus" RELATED [NeuroNames:3250] xref: DMBA:15950 xref: EMAPA:35700 xref: MA:0002930 xref: neuronames:3250 is_a: UBERON:0002308 {source="EMAPA"} ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucleus [Term] id: UBERON:0035011 name: central gray substance namespace: uberon synonym: "central gray" RELATED [NeuroNames:1584] synonym: "central gray substance" RELATED [NeuroNames:1584] synonym: "central grey" RELATED [NeuroNames:1584] synonym: "central grey substance" EXACT [FMA:83134] synonym: "griseum centrale" RELATED OMO:0003011 [NeuroNames:1584] synonym: "griseum periventriculare" RELATED OMO:0003011 [NeuroNames:1584] synonym: "stratum griseum centrale" RELATED OMO:0003011 [NeuroNames:1584] synonym: "substantia grisea centralis" EXACT [FMA:TA] synonym: "substantia grisea centralis" RELATED OMO:0003011 [NeuroNames:1584] xref: FMA:83134 xref: neuronames:1584 is_a: UBERON:0002020 {source="FMA"} ! gray matter [Term] id: UBERON:0035013 name: temporal cortex association area namespace: uberon synonym: "temporal association area" RELATED [] synonym: "temporal association areas" RELATED [NeuroNames:1821] synonym: "temporal association cortex" RELATED [NeuroNames:1821] synonym: "ventral temporal association areas" RELATED [NeuroNames:1821] xref: EMAPA:35852 xref: MA:0000943 xref: MBA:541 xref: neuronames:1821 is_a: UBERON:0035015 ! association cortex relationship: part_of UBERON:0016538 ! temporal cortex [Term] id: UBERON:0035014 name: functional part of brain namespace: uberon def: "A brain region defined by functional criteria, e.g. auditory cortex, rather than by structural or histological criteria." [NLX:155513] xref: NLX:155513 is_a: UBERON:0002616 {source="NIFSTD"} ! regional part of brain [Term] id: UBERON:0035015 name: association cortex namespace: uberon def: "Region of the cerebral cortex that integrates diverse sensory or motor information for purposeful action." [NIFSTD:oen_0001107] synonym: "association area" RELATED [NIFSTD:oen_0001107] synonym: "association areas of cortex" RELATED [NeuroNames:1348] synonym: "association cortex" RELATED [NeuroNames:1348] synonym: "cortical association areas" RELATED [NeuroNames:1348] xref: http://uri.neuinfo.org/nif/nifstd/oen_0001107 xref: neuronames:1348 is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain [Term] id: UBERON:0035016 name: tactile mechanoreceptor namespace: uberon synonym: "contact receptor" EXACT [FMA:85595] xref: FMA:85595 is_a: UBERON:0012449 ! mechanoreceptor [Term] id: UBERON:0035017 name: nociceptor nerve ending namespace: uberon def: "A peripheral terminal of a peripheral, afferent sensory pain receptor cell that is sensitive to injury or pain, usually caused by extreme thermal exposures, mechanical forces, or other noxious stimuli. The nociceptor nerve ending innervates target tissue and transduces noxious stimuli to the central nervous system via some axon(s)." [MESH:D009619] synonym: "nociceptor" RELATED [https://meshb.nlm.nih.gov/record/ui?ui=D009619] synonym: "pain receptor" RELATED [https://meshb.nlm.nih.gov/record/ui?ui=D009619] xref: MESH:D009619 is_a: UBERON:0012449 ! mechanoreceptor relationship: part_of CL:0000198 ! pain receptor cell [Term] id: UBERON:0035018 name: thermoreceptor namespace: uberon def: "Cellular receptors which mediate the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and NOCICEPTORS which detect cold or heat extreme enough to cause pain." [MESH:A08.800.550.700.840] synonym: "thermoreceptor" RELATED [MESH:A08.800.550.700.840] xref: MESH:D013823 xref: NCIT:C13822 xref: UMLS:C0039821 is_a: UBERON:0012451 ! sensory receptor [Term] id: UBERON:0035019 name: inferior olive, beta nucleus namespace: uberon synonym: "beta subnucleus of the inferior olive" RELATED [NeuroNames:1755] synonym: "inferior olive beta subnucleus" EXACT [MA:0001041] synonym: "inferior olive, beta subnucleus" RELATED [NeuroNames:1755] synonym: "IOBe" RELATED OMO:0003000 [DHBA:12602] xref: DHBA:12602 xref: EMAPA:37611 {source="MA:th"} xref: MA:0001041 xref: neuronames:1755 is_a: UBERON:0007244 ! inferior olivary nucleus relationship: part_of UBERON:0002127 {source="DHBA"} ! inferior olivary complex [Term] id: UBERON:0035020 name: left vagus X nerve trunk namespace: uberon synonym: "anterior vagus X nerve trunk" RELATED [MA:0001151] synonym: "left vagus neural trunk" EXACT [FMA:18157] synonym: "trunk of left vagus" EXACT [FMA:18157] xref: EMAPA:37798 {source="MA:th"} xref: FMA:18157 xref: MA:0001151 is_a: UBERON:0003535 ! vagus X nerve trunk [Term] id: UBERON:0035021 name: right vagus X nerve trunk namespace: uberon synonym: "posterior vagus X nerve trunk" RELATED [MA:0001152] synonym: "right vagus neural trunk" EXACT [FMA:18151] synonym: "trunk of right vagus" EXACT [FMA:18151] xref: EMAPA:37799 {source="MA:th"} xref: FMA:18151 xref: MA:0001152 is_a: UBERON:0003535 ! vagus X nerve trunk [Term] id: UBERON:0035022 name: trunk of segmental spinal nerve namespace: uberon synonym: "segmental spinal nerve trunk" EXACT [MA:0001179] xref: MA:0001179 is_a: UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0005197 ! segmental spinal nerve [Term] id: UBERON:0035024 name: lateral spinal nucleus namespace: uberon xref: DMBA:17690 xref: EMAPA:37634 {source="MA:th"} xref: MA:0002756 xref: neuronames:3159 xref: NLX:144473 is_a: UBERON:0011777 ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0035026 name: amygdalohippocampal transition area namespace: uberon synonym: "AHTA" RELATED OMO:0003000 [DHBA:10380] xref: DHBA:10380 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035027 name: amygdalohippocampal area, magnocellular division namespace: uberon synonym: "AHiAm" RELATED OMO:0003000 [HBA:265504452] xref: HBA:265504452 xref: PBA:10136 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035028 name: amygdalohippocampal area, parvocellular division namespace: uberon synonym: "AHiAp" RELATED OMO:0003000 [HBA:265504456] xref: HBA:265504456 xref: PBA:10137 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035044 name: olfactory cortex layer 3 namespace: uberon def: "Deepest layer of olfactory cortex." [NLX:152611] xref: NLX:152611 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex [Term] id: UBERON:0035109 name: plantar nerve namespace: uberon def: "A nerve that innervates the sole of the foot. Planar nerves arise from the posterior branch of the tibial nerve." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Plantar_nerve] comment: Divided into medial and plantar based on the location of the foot supplied synonym: "nerve, plantar" RELATED [] xref: https://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray834.svg/180px-Gray834.svg.png xref: NCIT:C77674 xref: SCTID:181074000 xref: UMLS:C0446824 xref: Wikipedia:Plantar_nerve is_a: UBERON:0003431 ! leg nerve relationship: part_of UBERON:0001323 ! tibial nerve [Term] id: UBERON:0035110 name: lateral plantar nerve namespace: uberon def: "A plantar nerve that supplies the lateral side of the plantar part of the foot, including pedal digit 5." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lateral_plantar_nerve] synonym: "external plantar nerve" EXACT [FMA:44724] synonym: "nervus plantaris lateralis" EXACT OMO:0003011 [Wikipedia:Lateral_plantar_nerve] xref: FMA:44724 xref: SCTID:181083005 xref: Wikipedia:Lateral_plantar_nerve is_a: UBERON:0035109 ! plantar nerve [Term] id: UBERON:0035111 name: medial plantar nerve namespace: uberon def: "A plantar nerve that supplies the medial side of the plantar part of the foot, including pedal digit 1." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lateral_plantar_nerve] synonym: "internal plantar nerve" EXACT [FMA:44716] synonym: "nervus plantaris medialis" EXACT OMO:0003011 [Wikipedia:Medial_plantar_nerve] xref: FMA:44716 xref: SCTID:181082000 xref: Wikipedia:Medial_plantar_nerve is_a: UBERON:0035109 ! plantar nerve [Term] id: UBERON:0035113 name: central part of mediodorsal nucleus of the thalamus namespace: uberon synonym: "MDc" RELATED OMO:0003000 [MBA:617] synonym: "mediodorsal nucleus of the thalamus, central part" EXACT [MBA:617] xref: MBA:617 is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0035114 name: lateral part of mediodorsal nucleus of the thalamus namespace: uberon synonym: "MDl" RELATED OMO:0003000 [MBA:626] synonym: "mediodorsal nucleus of the thalamus, lateral part" EXACT [MBA:626] xref: MBA:626 is_a: UBERON:0019269 ! gray matter of diencephalon relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of thalamus [Term] id: UBERON:0035145 name: nucleus sacci vasculosi namespace: uberon is_a: UBERON:0000125 ! neural nucleus [Term] id: UBERON:0035146 name: tractus sacci vasculosi namespace: uberon is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0035150 name: superior cerebral vein namespace: uberon def: "The Superior Cerebral Veins, eight to twelve in number, drain the superior, lateral, and medial surfaces of the hemispheres, and are mainly lodged in the sulci between the gyri, but some run across the gyri. They open into the superior sagittal sinus; the anterior veins runs nearly at right angles to the sinus; the posterior and larger veins are directed obliquely forward and open into the sinus in a direction more or less opposed to the current of the blood contained within it." [Wikipedia:Superior_cerebral_veins] subset: human_reference_atlas synonym: "superior cerebral vein" RELATED [Wikipedia:Superior_cerebral_veins] xref: FMA:50978 xref: SCTID:244393005 xref: Wikipedia:Superior_cerebral_veins is_a: UBERON:0016559 {source="FMA"} ! superficial cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035151 name: dorsal cerebral vein namespace: uberon xref: EMAPA:37142 {source="MA:th"} xref: MA:0002103 is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0035152 name: internal cerebral vein namespace: uberon def: "The internal cerebral veins (veins of Galen; deep cerebral veins) drain the deep parts of the hemisphere and are two in number; each is formed near the interventricular foramen by the union of the terminal and choroid veins. They run backward parallel with one another, between the layers of the tela chorioidea of the third ventricle, and beneath the splenium of the corpus callosum, where they unite to form a short trunk, the great cerebral vein; just before their union each receives the corresponding basal vein." [Wikipedia:Internal_cerebral_veins] subset: human_reference_atlas synonym: "internal cerebral vein" RELATED [Wikipedia:Internal_cerebral_veins] xref: FMA:51003 xref: NCIT:C32838 xref: SCTID:244397006 xref: UMLS:C0149579 xref: Wikipedia:Internal_cerebral_veins is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035153 name: dorsolateral prefrontal cortex layer 1 namespace: uberon def: "Most superficial layer of the Dorsolateral Prefrontal Cortex (DLPFC)." [NLX:156731] synonym: "dlPF1" RELATED OMO:0003000 [] synonym: "dlPFC1" RELATED OMO:0003000 [] synonym: "layer I of dorsolateral prefrontal cortex" EXACT [] xref: NLX:156731 is_a: UBERON:0005390 ! cortical layer I relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035154 name: dorsolateral prefrontal cortex layer 2 namespace: uberon def: "Layer 2 of neocortex lying just deep to superficial layer 1 of dorsolateral prefrontal cortex." [NLX:156732] synonym: "dlPF2" RELATED OMO:0003000 [] synonym: "dlPFC2" RELATED OMO:0003000 [] synonym: "layer II of dorsolateral prefrontal cortex" EXACT [PBA:12986] xref: NLX:156732 xref: PBA:12986 is_a: UBERON:0005391 ! cortical layer II relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035155 name: dorsolateral prefrontal cortex layer 3 namespace: uberon def: "Layer 3 of dorsolateral prefrontal cortex lying deep to the layer 2 and cytoarchitectonically defined by numerous small pyramidal neurons." [NLX:156733] synonym: "dlPF3" RELATED OMO:0003000 [] synonym: "dlPFC3" RELATED OMO:0003000 [] synonym: "layer III of dorsolateral prefrontal cortex" EXACT [PBA:12987] xref: NLX:156733 xref: PBA:12987 is_a: UBERON:0005392 ! cortical layer III relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035156 name: dorsolateral prefrontal cortex layer 4 namespace: uberon def: "Layer 4 of dorsolateral prefrontal cortex lying deep to the external pyramidal layer and cytoarchitectonically defined by presence of small cells." [NLX:156734] synonym: "dlPF4" RELATED OMO:0003000 [] synonym: "dlPFC4" RELATED OMO:0003000 [] synonym: "granular layer IV of dorsolateral prefrontal cortex" EXACT [PBA:12988] xref: NLX:156734 xref: PBA:12988 is_a: UBERON:0005393 ! cortical layer IV relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035157 name: dorsolateral prefrontal cortex layer 5 namespace: uberon def: "Layer 5 of dorsolateral prefrontal cortex lying deep to the internal granule cell layer 4 and cytoarchitectonically divisible into layers 5a and 5b. Layer 5a is characterized by the predominance of large pyramidal cell bodies. Layer 5b is pale in comparison." [NLX:156735] synonym: "dlPF5" RELATED OMO:0003000 [] synonym: "dlPFC5" RELATED OMO:0003000 [] synonym: "layer V of dorsolateral prefrontal cortex" EXACT [PBA:12989] xref: NLX:156735 xref: PBA:12989 is_a: UBERON:0005394 ! cortical layer V relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035158 name: dorsolateral prefrontal cortex layer 6 namespace: uberon def: "Innermost layer of dorsolateral prefrontal cortex lying deep to the internal pyramidal cell layer 5. It is cytoarchitectonically defined in the DLPFC by cells of varying sizes. DLPFC layer 6a is characterized by more neurons and layer 6b has comparatively more glia." [NLX:156736] synonym: "dlPF6" RELATED OMO:0003000 [] synonym: "dlPFC6" RELATED OMO:0003000 [] synonym: "layer VI of dorsolateral prefrontal cortex" EXACT [PBA:12990] xref: NLX:156736 xref: PBA:12990 is_a: UBERON:0005395 ! cortical layer VI relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex [Term] id: UBERON:0035207 name: deep fibular nerve namespace: uberon def: "A branch of the common peroneal nerve. It innervates the ankle and toes." [ncithesaurus:Deep_Peroneal_Nerve] synonym: "deep peroneal nerve" EXACT [FMA:44771] xref: FMA:44771 xref: NCIT:C92602 xref: SCTID:181081007 xref: UMLS:C0228949 xref: Wikipedia:Deep_fibular_nerve is_a: UBERON:0003431 ! leg nerve is_a: UBERON:0035652 ! fibular nerve relationship: part_of UBERON:0001324 ! common fibular nerve [Term] id: UBERON:0035231 name: superficial middle cerebral vein namespace: uberon def: "A vein that runs along the fissure of Sylvius to the cavernous sinus on the lateral surface of the brain and connects to the superior sagittal and transverse sinuses." [ncithesaurus:Superficial_Middle_Cerebral_Vein] subset: human_reference_atlas synonym: "Sylvian vein" EXACT [FMA:50983] synonym: "vein of Labbe" EXACT [FMA:50983] xref: FMA:50983 xref: NCIT:C33664 xref: SCTID:308729005 xref: UMLS:C0039027 xref: Wikipedia:Superficial_middle_cerebral_vein is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035319 name: anterior median fissure of spinal cord namespace: uberon def: "A fissure in the midline of the anterior surface of the spinal cord." [ncithesaurus:Anterior_Median_Fissure_of_Spinal_Cord] synonym: "fissura mediana anterior medullae spinalis" EXACT OMO:0003011 [FMA:83735, FMA:TA] synonym: "ventral median fissure of spinal cord" EXACT [FMA:83735] xref: FMA:83735 xref: NCIT:C32096 xref: SCTID:314225000 xref: UMLS:C1744548 xref: Wikipedia:Anterior_median_fissure_of_spinal_cord is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure [Term] id: UBERON:0035338 name: sphenoparietal sinus namespace: uberon def: "The cavernous sinus receives the superior ophthalmic vein through the superior orbital fissure, some of the cerebral veins, and also the small sphenoparietal sinus, which courses along the under surface of the small wing of the sphenoid." [Wikipedia:Sphenoparietal_sinus] xref: FMA:50776 xref: NCIT:C33585 xref: SCTID:279266001 xref: UMLS:C0226866 xref: Wikipedia:Sphenoparietal_sinus is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus [Term] id: UBERON:0035416 name: diaphragma sellae namespace: uberon def: "The diaphragma sellae or sellar diaphragm is the circular fold of dura mater that almost completely roofs the fossa hypophyseos in the sphenoid bone of the skull. It retains the pituitary gland in the fossa hypophyseos, with only the infundibulum of the pituitary gland passing through it." [Wikipedia:Diaphragma_sellae] synonym: "sellar diaphragm" EXACT [FMA:78540] xref: FMA:78540 xref: NCIT:C32459 xref: SCTID:32967008 xref: UMLS:C0228123 xref: Wikipedia:Diaphragma_sellae relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater [Term] id: UBERON:0035425 name: falx cerebelli namespace: uberon def: "A small triangular process of dura matter beginning at the internal occipital crest just beneath the tentorium and projecting forward." [ncithesaurus:Falx_Cerebelli] synonym: "cerebellar falx" EXACT [FMA:83974] xref: FMA:83974 xref: NCIT:C32584 xref: SCTID:280380009 xref: UMLS:C0228122 xref: Wikipedia:Falx_cerebelli relationship: part_of UBERON:0002363 ! dura mater relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater [Term] id: UBERON:0035501 name: unencapsulated tactile receptor namespace: uberon def: "Free nerve endings are widely distributed throughout the body, and are found as branches of unmyelinated, or lightly myelinated fibres grouped in bundles beneath the epithelium. As they penetrate the epithelium, they lose their myelin, and branch among the epithelial cells. Branches of one nerve may cover a wide area and overlap the territories of other nerves. The free nerve endings detect pain, touch, pressure and temperature, and are associated with C fibres." [ncithesaurus:Free_Nerve_Ending] synonym: "free nerve ending" EXACT [FMA:84005] synonym: "unencapsulated nerve ending" EXACT [FMA:84005] xref: FMA:84005 xref: NCIT:C13174 xref: SCTID:38005009 xref: UMLS:C0228107 is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor [Term] id: UBERON:0035526 name: superficial fibular nerve namespace: uberon def: "A branch of the common fibular nerve that innervates the fibularis longus and brevis muscles, and via branches innervates parts of the dorsal part of the pes." [http://medical-dictionary.thefreedictionary.com/superficial%20fibular%20nerve, ncithesaurus:Superficial_Peroneal_Nerve, UBERON:cjm] synonym: "superficial peroneal nerve" EXACT [FMA:44699] xref: FMA:44699 xref: NCIT:C92603 xref: SCTID:181080008 xref: UMLS:C0228952 xref: Wikipedia:Superficial_fibular_nerve is_a: UBERON:0003431 ! leg nerve is_a: UBERON:0035652 ! fibular nerve relationship: part_of UBERON:0001324 ! common fibular nerve [Term] id: UBERON:0035530 name: basal vein namespace: uberon def: "The basal vein is formed at the anterior perforated substance by the union of (a) a small anterior cerebral vein which accompanies the anterior cerebral artery and supplies the medial surface of the frontal lobe by the fronto-basal vein. (b) the deep middle cerebral vein (deep Sylvian vein), which receives tributaries from the insula and neighboring gyri, and runs in the lower part of the lateral cerebral fissure, and (c) the inferior striate veins, which leave the corpus striatum through the anterior perforated substance. The basal vein passes backward around the cerebral peduncle, and ends in the internal cerebral vein; it receives tributaries from the interpeduncular fossa, the inferior horn of the lateral ventricle, the hippocampal gyrus, and the mid-brain." [Wikipedia:Basal_vein] subset: human_reference_atlas synonym: "basal vein of rosenthal" EXACT [FMA:50990] synonym: "basal veins" RELATED [Wikipedia:Basal_vein] synonym: "inferior striate vein" RELATED [Wikipedia:Basal_vein] synonym: "inferior striate veins" RELATED [Wikipedia:Basal_vein] synonym: "rosenthal's vein" EXACT [FMA:50990] xref: FMA:50990 xref: SCTID:244398001 xref: Wikipedia:Basal_vein is_a: UBERON:0016564 {source="FMA"} ! deep cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035532 name: deep middle cerebral vein namespace: uberon def: "The blood vessel that receives deoxygenated blood from the insula and gyri and drains into the basal vein of Rosenthal deep in the lateral sulcus." [ncithesaurus:Deep_Middle_Cerebral_Vein] subset: human_reference_atlas xref: FMA:51309 xref: NCIT:C32440 xref: SCTID:279272001 xref: UMLS:C0226586 xref: Wikipedia:Deep_middle_cerebral_vein is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035562 name: intermediate pretectal nucleus namespace: uberon synonym: "IPT" RELATED OMO:0003000 [DMBA:16598] xref: DMBA:16598 is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035563 name: magnocellular superficial pretectal nucleus namespace: uberon def: "A nucleus that is part of the superficial pretectum and is characterized by large widely scattered cells." [ISBN:0471888893] synonym: "magnocellular superficial pretectal nuclei" EXACT OMO:0003004 [ZFA:0000235] synonym: "PSm" RELATED OMO:0003000 [ISBN:0471888893] xref: TAO:0000235 xref: ZFA:0000235 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035568 ! superficial pretectal nucleus relationship: part_of UBERON:2000687 {source="ZFA"} ! superficial pretectum property_value: RO:0002161 NCBITaxon:27686 {source="ISBN:0471888893"} property_value: RO:0002161 NCBITaxon:7900 {source="ISBN:0471888893"} property_value: UBPROP:0000001 "Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." xsd:string {source="ZFA:0000235"} [Term] id: UBERON:0035564 name: parvocellular superficial pretectal nucleus namespace: uberon def: "A nucleus that is part of the superficial pretectum and is characterized by small cells." [ISBN:0471888893, ZFA:0000406] synonym: "parvocellular superficial pretectal nuclei" EXACT OMO:0003004 [ZFA:0000406] synonym: "PSp" RELATED OMO:0003000 [ISBN:0471888893] synonym: "superficial pretectal nucleus" BROAD SENSU [ISBN:0471888893, NCBITaxon:27686, NCBITaxon:7900] xref: TAO:0000406 xref: ZFA:0000406 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035568 ! superficial pretectal nucleus relationship: part_of UBERON:2000687 {source="ZFA"} ! superficial pretectum property_value: UBPROP:0000008 "in reedfishes and sturgeons this is the only nucleus in the superficial pretectal zone[ISBN:0471888893]" xsd:string [Term] id: UBERON:0035565 name: caudal pretectal nucleus namespace: uberon def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000631] synonym: "caudal pretectal nuclei" EXACT OMO:0003004 [ZFA:0000631] synonym: "nucleus glomerulosus" RELATED [] synonym: "posterior pretectal nucleus" RELATED INCONSISTENT [ZFA:0000631] xref: TAO:0000631 xref: ZFA:0000631 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035568 ! superficial pretectal nucleus relationship: part_of UBERON:2000687 {source="ZFA"} ! superficial pretectum property_value: RO:0002175 NCBITaxon:32455 [Term] id: UBERON:0035566 name: central pretectal nucleus namespace: uberon def: "Any nucleus found in the central pretectum." [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus praetectalis centralis" EXACT OMO:0003011 [ZFA:0000635] xref: TAO:0000635 xref: ZFA:0000635 is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:2000183 ! central pretectum property_value: RO:0002161 NCBITaxon:40674 property_value: RO:0002175 NCBITaxon:118040 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:7898 {source="ISBN:0471888893"} property_value: UBPROP:0000001 "Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." xsd:string {source="ZFA:0000635"} property_value: UBPROP:0000008 "Lateral to the posterior commissure in Squalimorphi due to lateral movements of neurons during pretectal development[ISBN:0471888893]" xsd:string [Term] id: UBERON:0035567 name: accessory pretectal nucleus namespace: uberon def: "Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000714] synonym: "APN" EXACT [ZFA:0000714] synonym: "nucleus praetectalis accessorius" EXACT OMO:0003011 [ZFA:0000714] xref: TAO:0000714 xref: ZFA:0000714 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035566 ! central pretectal nucleus relationship: part_of UBERON:2000183 {source="ZFA"} ! central pretectum [Term] id: UBERON:0035568 name: superficial pretectal nucleus namespace: uberon def: "Any nucleus found in the superficial pretectum." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:2000687 ! superficial pretectum property_value: RO:0002161 NCBITaxon:40674 property_value: RO:0002175 NCBITaxon:118040 {src="ISBN:0471888893"} property_value: UBPROP:0000008 "Lateral in Squalimorphi due to lateral movements of neurons during pretectal development[ISBN:0471888893]" xsd:string [Term] id: UBERON:0035569 name: periventricular pretectal nucleus namespace: uberon def: "A nucleus medial to the central pretectal nucleus in the periventricular zone." [ISBN:0471888893] comment: Can be subdivided into dorsal and ventral[ISBN:0471888893] synonym: "periventricular pretectum" EXACT [ZFA:0000601] synonym: "pretectal periventricular nuclei" EXACT OMO:0003004 [ZFA:0000601] synonym: "pretectal periventricular nucleus" EXACT [ZFA:0000601] xref: TAO:0000601 xref: ZFA:0000601 is_a: UBERON:0006569 ! diencephalic nucleus is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0001944 ! pretectal region relationship: part_of UBERON:2000293 {source="ZFA"} ! synencephalon property_value: RO:0002161 NCBITaxon:40674 property_value: RO:0002175 NCBITaxon:118040 {src="ISBN:0471888893"} [Term] id: UBERON:0035570 name: tectothalamic tract namespace: uberon synonym: "tectothalamic fibers" EXACT [NeuroNames:1424] synonym: "tectothalamic fibers" RELATED [NeuroNames:1424] synonym: "tectothalamic pathway" RELATED [NeuroNames:1424] synonym: "tectothalamic tract" RELATED [NeuroNames:1424] synonym: "ttp" RELATED OMO:0003000 [MBA:357] xref: MBA:357 xref: neuronames:1424 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0001908 ! optic tract [Term] id: UBERON:0035572 name: nucleus praetectalis profundus namespace: uberon def: "A neural nucleus of the pretectal region that lies lateral to the posterior commissure and gives rise to widespread projections." [ISBN:0471888893] synonym: "nucleus pratectalis profundus" EXACT OMO:0003011 [] synonym: "profundal pretectal nucleus" EXACT [] is_a: UBERON:0014450 ! pretectal nucleus property_value: RO:0002175 NCBITaxon:8293 [Term] id: UBERON:0035573 name: dorsal pretectal periventricular nucleus namespace: uberon synonym: "optic nucleus of posterior commissure" RELATED [ISBN:0471888893] synonym: "PPd" RELATED OMO:0003000 [ISBN:0471888893] is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035574 name: ventral pretectal periventricular nucleus namespace: uberon synonym: "PPv" RELATED OMO:0003000 [ISBN:0471888893] is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035575 name: paracommissural nucleus of solitary tract namespace: uberon xref: FMA:77466 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0035577 name: paracommissural periventricular pretectal nucleus namespace: uberon synonym: "paracommissural nucleus" EXACT [ZFA:0000404] xref: TAO:0000404 xref: ZFA:0000404 is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035580 name: nucleus geniculatus of pretectum namespace: uberon comment: Receives retinal input synonym: "nucleus geniculatus pretectalis" EXACT OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus property_value: RO:0002175 NCBITaxon:8459 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035581 name: nucleus lentiformis of pretectum namespace: uberon comment: Receives retinal input synonym: "nucleus lentiformis mesencephali" EXACT OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus property_value: RO:0002175 NCBITaxon:8459 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035582 name: nucleus posteriodorsalis of pretectum namespace: uberon comment: Receives retinal input synonym: "nucleus posteriodorsalis" EXACT OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus property_value: RO:0002175 NCBITaxon:8459 {source="ISBN:0471888893"} property_value: RO:0002175 NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035583 name: nucleus lentiformis thalamus namespace: uberon synonym: "nucleus lentiformis thalami" RELATED OMO:0003011 [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus property_value: RO:0002175 NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035584 name: ventral pretectal nucleus (sauropsida) namespace: uberon synonym: "ventral pretectal nucleus" RELATED [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus property_value: RO:0002175 NCBITaxon:8504 {source="ISBN:0471888893"} [Term] id: UBERON:0035585 name: tectal gray nucleus (Testudines) namespace: uberon synonym: "griseum tectalis" EXACT OMO:0003011 [ISBN:0471888893] synonym: "tectal gray" RELATED [ISBN:0471888893] synonym: "tectal grey" RELATED [] is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035586 name: nucleus lentiformis mesencephali (Aves) namespace: uberon def: "A pretectal nucleus in Aves that receives heavy retinal input and is hypothesized to be homologous to the nucleus of the optic tract of Mammals." [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035587 name: nucleus pretectalis diffusus namespace: uberon is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035588 name: subpretectal complex of Aves namespace: uberon def: "A nuclear complex in the ventral pretectal region." [ISBN:0471888893] is_a: UBERON:0003528 ! brain gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0035589 name: nucleus subpretectalis namespace: uberon is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0035588 ! subpretectal complex of Aves [Term] id: UBERON:0035590 name: nucleus interstitio-pretectalis-subpretectalis namespace: uberon is_a: UBERON:0014450 ! pretectal nucleus relationship: part_of UBERON:0035588 ! subpretectal complex of Aves [Term] id: UBERON:0035591 name: lateral spiriform nucleus namespace: uberon is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035592 name: medial spiriform nucleus namespace: uberon is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035593 name: nucleus circularis of pretectum namespace: uberon synonym: "nucleus circularis" BROAD [ISBN:0471888893] is_a: UBERON:0014450 ! pretectal nucleus [Term] id: UBERON:0035595 name: accessory optic tract namespace: uberon synonym: "accessory optic fibers" RELATED [] synonym: "aot" RELATED OMO:0003000 [MBA:876] xref: MBA:876 xref: neuronames:1189 is_a: UBERON:0011591 ! tract of diencephalon relationship: part_of UBERON:0001908 ! optic tract [Term] id: UBERON:0035596 name: circular nucleus of antherior hypothalamic nucleus namespace: uberon def: "A group of cells located in the central part of the anterior hypothalamic nucleus in the anterior hypothalamic region of the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). Functionally it belongs to the magnocellular neuroendocrine cell groups of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1853] comment: group of magnocellular elements arranged in a ring around a capillary bed. The cells are predominantly monopolar, tightly packed, and are flattened at the outer border of the ring. The entire nucleus is surrounded or encapsulated by myelinated fibers, hypothesized to be an osmoreceptor[PMID:974791] synonym: "circular nucleus" RELATED [NeuroNames:1853] synonym: "NC" RELATED OMO:0003000 [MBA:432] synonym: "nucleus circularis" BROAD OMO:0003011 [MBA:432] xref: MBA:432 xref: neuronames:1853 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 {source="MBA"} ! periventricular zone of hypothalamus [Term] id: UBERON:0035599 name: profundal part of trigeminal ganglion complex namespace: uberon synonym: "ophthalmic division of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "ophthalmic part of trigeminal ganglion" RELATED [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion relationship: part_of UBERON:0001675 ! trigeminal ganglion [Term] id: UBERON:0035601 name: maxillomandibular part of trigeminal ganglion complex namespace: uberon synonym: "maxillomandibular division of trigeminal ganglion" RELATED [] synonym: "maxillomandibular part of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion relationship: part_of UBERON:0001675 ! trigeminal ganglion [Term] id: UBERON:0035602 name: collar nerve cord namespace: uberon def: "A nerve tract found in marine worms that is located in the collar body region (three body regions in marine worms: proboscis, collar (extending into tentacle-fringed arms) and trunk)." [Bgee:AN, PMID:25903626] is_a: UBERON:0005053 ! primary nerve cord [Term] id: UBERON:0035607 name: accessory nerve cord of dorsal region namespace: uberon def: "Any longitudinally extending condensed cluster of neurons and processes that runs along the dorsal mid-line of the animal that is not the most prominent nerve cord." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Dorsal_nerve_cord] synonym: "dorsal cord" RELATED [WBbt:0006750] synonym: "dorsal nerve cord" NARROW [WBbt:0006750] xref: WBbt:0006750 is_a: UBERON:0011215 {source="cjm"} ! central nervous system cell part cluster property_value: RO:0002161 NCBITaxon:7711 [Term] id: UBERON:0035608 name: dura mater lymph vessel namespace: uberon def: "Any lymph vessel that is located in the dura mater of the brain." [DOI:10.1038/nature14432, DOI:10.1111/joa.12381] comment: Louveau et al (DOI:10.1038/nature14432) claim the discovery of lymphatics in the cerebral dura mater, but this is disputed by Bucchieri et al (DOI:10.1111/joa.12381) synonym: "dural lymph vasculature" RELATED [] synonym: "dural lymph vessel" EXACT [] relationship: part_of UBERON:0010743 ! meningeal cluster property_value: UBPROP:0000010 "while Louveau et al (DOI:10.1038/nature14432) state this is within the CNS (thus overturning dogma about the presence of lymphatics in the CNS), in this ontology the dura" xsd:string [Term] id: UBERON:0035642 name: laryngeal nerve namespace: uberon def: "Any nerve that innervates the larynx." [UBERON:cjm] xref: MESH:D007823 xref: SCTID:307013006 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0035646 name: anterior superior alveolar nerve namespace: uberon def: "The anterior superior alveolar branch (anterior superior dental branch), of considerable size, is given off from the maxillary nerve just before its exit from the infraorbital foramen; it descends in a canal in the anterior wall of the maxillary sinus, and divides into branches which supply the incisor and canine teeth. It communicates with the middle superior alveolar branch, and gives off a nasal branch, which passes through a minute canal in the lateral wall of the inferior meatus, and supplies the mucous membrane of the anterior part of the inferior meatus and the floor of the nasal cavity, communicating with the nasal branches from the sphenopalatine ganglion." [Wikipedia:Anterior_superior_alveolar_nerve] synonym: "anterior superior alveolar branch" RELATED [Wikipedia:Anterior_superior_alveolar_nerve] synonym: "anterior superior dental nerve" EXACT [FMA:52935] xref: FMA:52935 xref: SCTID:280241004 xref: Wikipedia:Anterior_superior_alveolar_nerve is_a: UBERON:0018398 {source="FMA"} ! superior alveolar nerve [Term] id: UBERON:0035647 name: posterior auricular nerve namespace: uberon def: "A branch of the facial nerve that innervates the posterior auricular and intrinsic muscles of the auricle and, through its occipital branch, innervates the occipital belly of the occipitofrontal muscle." [http://dictionary.reference.com/browse/posterior+auricular+nerve] synonym: "auricularis posterior branch of facial nerve" EXACT [FMA:53278] synonym: "posterior auricular branch of the facial" RELATED [Wikipedia:Posterior_auricular_nerve] xref: FMA:53278 xref: SCTID:280277006 xref: Wikipedia:Posterior_auricular_nerve is_a: UBERON:0035648 ! nerve innervating pinna relationship: part_of UBERON:0003725 ! cervical nerve plexus [Term] id: UBERON:0035648 name: nerve innervating pinna namespace: uberon def: "Any nerve that innervates the pinna." [UBERON:cjm] synonym: "auricular nerve" EXACT [MA:0001232] xref: EMAPA:36513 xref: MA:0001232 is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001647 ! facial nerve [Term] id: UBERON:0035649 name: nerve of penis namespace: uberon def: "Any nerve that innervates the penis." [UBERON:cjm] synonym: "penile nerve" EXACT [] synonym: "penis nerve" EXACT [] xref: EMAPA:35057 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0035650 name: nerve of clitoris namespace: uberon def: "Any nerve that innervates the clitoris." [UBERON:cjm] subset: human_reference_atlas synonym: "clitoral nerve" EXACT [] synonym: "clitoris nerve" EXACT [] xref: EMAPA:35044 is_a: UBERON:0001021 ! nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035652 name: fibular nerve namespace: uberon def: "Any nerve that innervates the fibularis. Includes the common fibular nerve, and its branches." [UBERON:cjm] subset: grouping_class synonym: "peroneal nerve" EXACT [] xref: EMAPA:36511 xref: MESH:D010543 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0035768 name: coccygeal nerve plexus namespace: uberon def: "The coccygeal plexus is a plexus of nerves near the coccyx bone." [Wikipedia:Coccygeal_plexus] subset: human_reference_atlas synonym: "coccygeal plexus" EXACT [FMA:45356] synonym: "plexus coccygeus" EXACT OMO:0003011 [FMA:TA] xref: FMA:45356 xref: SCTID:280355009 xref: Wikipedia:Coccygeal_plexus is_a: UBERON:0001813 {source="FMA"} ! spinal nerve plexus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035769 name: mesenteric ganglion namespace: uberon xref: SCTID:314754005 is_a: UBERON:0003964 ! prevertebral ganglion relationship: part_of UBERON:0035771 ! mesenteric plexus [Term] id: UBERON:0035770 name: inferior mesenteric nerve plexus namespace: uberon def: "The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses." [Wikipedia:Inferior_mesenteric_plexus] subset: human_reference_atlas synonym: "inferior mesenteric plexus" EXACT [FMA:6641] synonym: "plexus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] xref: FMA:6641 xref: SCTID:362495005 xref: Wikipedia:Inferior_mesenteric_plexus is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0035771 ! mesenteric plexus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035771 name: mesenteric plexus namespace: uberon subset: human_reference_atlas xref: SCTID:314752009 is_a: UBERON:0001816 ! autonomic nerve plexus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035772 name: aortic plexus namespace: uberon subset: human_reference_atlas xref: FMA:80133 is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035773 name: abdominal nerve plexus namespace: uberon def: "The abdominal aortic plexus (aortic plexus) is formed by branches derived, on either side, from the celiac plexus and ganglia, and receives filaments from some of the lumbar ganglia. It is situated upon the sides and front of the aorta, between the origins of the superior and inferior mesenteric arteries. From this plexus arise part of the spermatic, the inferior mesenteric, and the hypogastric plexuses; it also distributes filaments to the inferior vena cava." [Wikipedia:Abdominal_aortic_plexus] synonym: "abdominal aortic nerve plexus" EXACT [FMA:6640] synonym: "abdominal aortic plexus" EXACT [FMA:6640] synonym: "plexus aorticus abdominalis" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus aorticus abdominalis" EXACT OMO:0003011 [FMA:TA] synonym: "preaortic nerve plexus" EXACT [FMA:6640] xref: FMA:6640 xref: SCTID:362491001 xref: Wikipedia:Abdominal_aortic_plexus is_a: UBERON:0035772 ! aortic plexus [Term] id: UBERON:0035774 name: thoracic aortic plexus namespace: uberon def: "The thoracic aortic plexus is a sympathetic plexus in the region of the thoracic aorta." [Wikipedia:Thoracic_aortic_plexus] synonym: "plexus aorticus thoracicus" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus aorticus thoracicus" EXACT OMO:0003011 [FMA:TA] synonym: "thoracic aortic nerve plexus" EXACT [FMA:77574] xref: FMA:77574 xref: Wikipedia:Thoracic_aortic_plexus is_a: UBERON:0035772 ! aortic plexus [Term] id: UBERON:0035776 name: accessory ciliary ganglion namespace: uberon def: "A parasympathetic ganglion located on the short ciliary nerve differentiated from the main ciliary ganglion by virtue of the fact that it had no root derived directly from the inferior trunk of the oculomotor nerve and it never attaches to this nerve." [PMID:2802184] is_a: UBERON:0035783 ! ganglion of ciliary nerve property_value: RO:0002171 UBERON:0001643 property_value: UBPROP:0000008 "tested for and found to be present in pig, sika deer, domestic sheep, horse, cat, fox, racoon dog, marten, rat, rabbit, crab-eating macaque, japanese macaque and human[PMID:2802184]" xsd:string [Term] id: UBERON:0035783 name: ganglion of ciliary nerve namespace: uberon def: "Any parasympathetic ganglion that extends fibers into the short ciliary nerve. Includes both the main and acccessory ciliary ganglia." [UBERON:cjm] is_a: UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0035785 name: telencephalic song nucleus HVC namespace: uberon def: "A nucleus in the brain of songbirds located in the caudal nidopallium, projecting to the song motor pathway via the robust nucleus of the arcopallium and to the Anterior Forebrain Pathway via the basal ganglia nucleus Area X." [GOC:mr, https://github.com/geneontology/go-ontology/issues/12057, Wikipedia:HVC_(avian_brain_region)] synonym: "higher vocal centre" RELATED DEPRECATED [BTO:0003390, PMID:15313771] synonym: "HVC" BROAD OMO:0003000 [Wikipedia:HVC_(avian_brain_region)] synonym: "HVc" RELATED DEPRECATED [PMID:15313771] synonym: "HVC (avian brain region)" EXACT [Wikipedia:HVC_(avian_brain_region)] synonym: "hyperstriatum ventrale" RELATED DEPRECATED [BTO:0003390] synonym: "pars caudale" RELATED [BTO:0003390] synonym: "pars caudalis (HVc)" EXACT DEPRECATED [Wikipedia:HVC_(avian_brain_region)] synonym: "telencephalic song nucleus HVC" EXACT [BTO:0003390] xref: BTO:0003390 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007334 {source="Wikipedia"} ! nidopallium [Term] id: UBERON:0035786 name: layer of CA1 field namespace: uberon subset: non_informative xref: FMA:277844 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0003881 ! CA1 field of hippocampus [Term] id: UBERON:0035787 name: layer of CA2 field namespace: uberon subset: non_informative xref: FMA:277846 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0003882 ! CA2 field of hippocampus [Term] id: UBERON:0035788 name: layer of CA3 field namespace: uberon subset: non_informative xref: FMA:277848 is_a: UBERON:0002305 ! layer of hippocampus relationship: part_of UBERON:0003883 ! CA3 field of hippocampus [Term] id: UBERON:0035802 name: alveus of CA2 field namespace: uberon def: "Part of alveus lying within hippocampal sector CA2." [UBERON:cjm] xref: FMA:277876 is_a: UBERON:0035787 ! layer of CA2 field relationship: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0035803 name: extrapyramidal tract system namespace: uberon def: "A neural network located in the brain that is part of the motor system involved in the coordination of movement that is distinct from the pyramidal tract." [Wikipedia:Extrapyramidal_system] synonym: "eps" RELATED OMO:0003000 [MBA:1000] synonym: "extra-pyramidal tract" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal fibre" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal motor system" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal pathway" RELATED [NeuroNames:2070] synonym: "extrapyramidal system" RELATED [NeuroNames:2070] synonym: "extrapyramidal tracts" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramindal system" RELATED [Wikipedia:Extrapyramidal_system] xref: MBA:1000 xref: MESH:D005116 xref: neuronames:2070 xref: neuronames:3015 xref: SCTID:362288003 xref: SCTID:362400005 xref: Wikipedia:Extrapyramidal_system is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0025525 ! motor system [Term] id: UBERON:0035807 name: area X of basal ganglion namespace: uberon def: "A nucleus in the basal ganglion of songbirds." [GOC:mr, https://github.com/geneontology/go-ontology/issues/12142, PMID15116398, PMID:18398825] synonym: "area X" BROAD [] is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002420 ! basal ganglion [Term] id: UBERON:0035808 name: robust nucleus of arcopallium namespace: uberon def: "A specialized nucleus within the intermediate archistriatum of songbirds, required for and active during the production of learned song." [BTO:0003366, Wikipedia:Arcopallium] synonym: "RA" RELATED [BTO:0003366] synonym: "robust nucleus of the arcopallium" RELATED DEPRECATED [BTO:0003366, Wikipedia:Arcopallium] synonym: "telencephalic song nucleus RA" RELATED [BTO:0003366] xref: BTO:0003366 is_a: UBERON:0000125 {source="cjm"} ! neural nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0007350 {source="BTO"} ! arcopallium [Term] id: UBERON:0035872 name: primary somatosensory area barrel field layer 5 namespace: uberon synonym: "barrel cortex layer 5" RELATED [NLX:157671] synonym: "SSp-bfd5" RELATED OMO:0003000 [MBA:1070] xref: MBA:1070 xref: NLX:157671 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035873 name: primary somatosensory area barrel field layer 1 namespace: uberon synonym: "SSp-bfd1" RELATED OMO:0003000 [MBA:981] xref: MBA:981 xref: NLX:157672 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035874 name: primary somatosensory area barrel field layer 2/3 namespace: uberon synonym: "barrel cortex layer 2/3" RELATED [NLX:157673] synonym: "SSp-bfd2/3" RELATED OMO:0003000 [MBA:201] xref: MBA:201 xref: NLX:157673 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035875 name: primary somatosensory area barrel field layer 6b namespace: uberon synonym: "barrel cortex layer 6B" RELATED [NLX:157674] synonym: "SSp-bfd6b" RELATED OMO:0003000 [MBA:1062] xref: MBA:1062 xref: NLX:157674 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035876 name: primary somatosensory area barrel field layer 6a namespace: uberon synonym: "barrel cortex layer 6A" RELATED [NLX:157675] synonym: "SSp-bfd6a" RELATED OMO:0003000 [MBA:1038] xref: MBA:1038 xref: NLX:157675 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035877 name: primary somatosensory area barrel field layer 4 namespace: uberon synonym: "barrel cortex layer 4" RELATED [NLX:157676] synonym: "SSp-bfd4" RELATED OMO:0003000 [MBA:1047] xref: MBA:1047 xref: NLX:157676 is_a: UBERON:0002301 ! layer of neocortex is_a: UBERON:0022303 {source="cjm"} ! nervous system cell part layer relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex [Term] id: UBERON:0035885 name: dorsal auditory area namespace: uberon synonym: "AUDd" RELATED OMO:0003000 [MBA:1011] xref: MBA:1011 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex [Term] id: UBERON:0035886 name: posterior parietal association areas namespace: uberon synonym: "PTLp" RELATED OMO:0003000 [MBA:22] xref: MBA:22 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex [Term] id: UBERON:0035890 name: postrhinal area namespace: uberon synonym: "VISpor" RELATED OMO:0003000 [MBA:312782628] xref: MBA:312782628 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035892 name: primary visual area, layer 6a namespace: uberon synonym: "VISp6a" RELATED OMO:0003000 [MBA:33] xref: MBA:33 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035893 name: anteromedial visual area namespace: uberon synonym: "VISam" RELATED OMO:0003000 [MBA:394] xref: MBA:394 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035894 name: anterolateral visual area namespace: uberon synonym: "VISal" RELATED OMO:0003000 [MBA:402] xref: MBA:402 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035895 name: lateral visual area namespace: uberon synonym: "VISl" RELATED OMO:0003000 [MBA:409] xref: MBA:409 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035897 name: posterolateral visual area namespace: uberon synonym: "VISpl" RELATED OMO:0003000 [MBA:425] xref: MBA:425 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035900 name: posteromedial visual area namespace: uberon synonym: "VISpm" RELATED OMO:0003000 [MBA:533] xref: MBA:533 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035904 name: primary visual area, layer 4 namespace: uberon synonym: "VISp4" RELATED OMO:0003000 [MBA:721] xref: MBA:721 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035906 name: primary visual area, layer 5 namespace: uberon synonym: "VISp5" RELATED OMO:0003000 [MBA:778] xref: MBA:778 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035907 name: primary visual area, layer 2/3 namespace: uberon synonym: "VISp2/3" RELATED OMO:0003000 [MBA:821] xref: MBA:821 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035908 name: anterolateral visual area, layer 5 namespace: uberon synonym: "VISal5" RELATED OMO:0003000 [MBA:233] xref: MBA:233 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area [Term] id: UBERON:0035909 name: posteromedial visual area, layer 6a namespace: uberon synonym: "VISpm6a" RELATED OMO:0003000 [MBA:257] xref: MBA:257 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035911 name: postrhinal area, layer 4 namespace: uberon synonym: "VISpor4" RELATED OMO:0003000 [MBA:312782640] xref: MBA:312782640 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area [Term] id: UBERON:0035912 name: rostrolateral visual area namespace: uberon synonym: "VISrl" RELATED OMO:0003000 [MBA:417] xref: MBA:417 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal association areas [Term] id: UBERON:0035913 name: anteromedial visual area, layer 5 namespace: uberon synonym: "VISam5" RELATED OMO:0003000 [MBA:433] xref: MBA:433 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area [Term] id: UBERON:0035914 name: posteromedial visual area, layer 4 namespace: uberon synonym: "VISpm4" RELATED OMO:0003000 [MBA:501] xref: MBA:501 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035915 name: lateral visual area, layer 4 namespace: uberon synonym: "VISl4" RELATED OMO:0003000 [MBA:573] xref: MBA:573 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035916 name: lateral visual area, layer 5 namespace: uberon synonym: "VISl5" RELATED OMO:0003000 [MBA:613] xref: MBA:613 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035917 name: dorsal auditory area, layer 4 namespace: uberon synonym: "AUDd4" RELATED OMO:0003000 [MBA:678] xref: MBA:678 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area [Term] id: UBERON:0035918 name: lateral visual area, layer 6a namespace: uberon synonym: "VISl6a" RELATED OMO:0003000 [MBA:74] xref: MBA:74 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035919 name: posterolateral visual area, layer 4 namespace: uberon synonym: "VISpl4" RELATED OMO:0003000 [MBA:869] xref: MBA:869 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area [Term] id: UBERON:0035920 name: rostrolateral area, layer 5 namespace: uberon synonym: "VISrl5" RELATED OMO:0003000 [MBA:312782616] xref: MBA:312782616 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0035912 {source="MBA"} ! rostrolateral visual area [Term] id: UBERON:0035922 name: intraculminate fissure of cerebellum namespace: uberon def: "A fissure that divides the culmen lobule (lobules IV and V)." [MP:000999, PMID:1953602, UBERON:cjm] synonym: "fissura intraculminalis" EXACT OMO:0003011 [FMA:TA] synonym: "ICF" RELATED OMO:0003000 [DHBA:266441729] synonym: "intraculminate fissure" EXACT [FMA:83737, HBA:9409] xref: DHBA:266441729 xref: FMA:83737 xref: HBA:9409 xref: neuronames:1995 xref: RadLex:RID6872 xref: SCTID:369052000 is_a: UBERON:0003980 ! cerebellum fissure relationship: part_of UBERON:0007763 ! cerebellum vermis culmen property_value: RO:0002174 NCBITaxon:9606 property_value: UBPROP:0000008 "The culmen lobule (lobules IV/V) is a single structure in humans, but it is divided by the intraculminate fissure in many rodents. In some mouse strains such as SLJ/J, the intraculminate fissure is absent, in some strains such as DBA/2J it is present, and other strains (C57BL/10J and BALB/cJ) exhibit considerable variablility (PMID: 1953602).[MP]" xsd:string [Term] id: UBERON:0035924 name: radiation of corpus callosum namespace: uberon def: "The spreading out of the fibers of the corpus callosum in the centrum semiovale of each cerebral hemisphere." [http://www.medilexicon.com/medicaldictionary.php?t=74819] synonym: "CCRD" RELATED OMO:0003000 [DHBA:12026] synonym: "corpus callosum radiation" EXACT [FMA:77693] synonym: "radiatio corporis callosi" EXACT OMO:0003011 [FMA:TA] synonym: "radiatio corporis callosi" RELATED OMO:0003011 [NeuroNames:1336] synonym: "radiations of corpus callosum" RELATED OMO:0003004 [HBA:265504962] synonym: "radiations of the corpus callosum" RELATED OMO:0003004 [NeuroNames:1336] xref: DHBA:12026 xref: FMA:77693 xref: HBA:265504962 xref: neuronames:1336 xref: SCTID:279308000 is_a: UBERON:0000122 {source="cjm"} ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002336 {source="HBA"} ! corpus callosum [Term] id: UBERON:0035925 name: central sulcus of insula namespace: uberon synonym: "central fissure of insula" EXACT [FMA:83779] synonym: "central fissure of insula" RELATED [NeuroNames:112] synonym: "central fissure of island" EXACT [FMA:83779] synonym: "central fissure of island" RELATED [NeuroNames:112] synonym: "central insula sulcus" EXACT [FMA:83779] synonym: "central insula sulcus" RELATED [NeuroNames:112] synonym: "central insular sulcus" EXACT [FMA:83779] synonym: "central insular sulcus" RELATED [NeuroNames:112] synonym: "central sulcus of insula" EXACT [FMA:83779] synonym: "central sulcus of the insula" RELATED [NeuroNames:112] synonym: "CIS" RELATED OMO:0003000 [HBA:9399] synonym: "CSIN" RELATED OMO:0003000 [DHBA:13227] synonym: "fissura centralis insulae" EXACT OMO:0003011 [FMA:TA] synonym: "fissura centralis insulae" RELATED OMO:0003011 [NeuroNames:112] synonym: "sulcus centralis insulae" EXACT OMO:0003011 [FMA:TA] synonym: "sulcus centralis insulae" RELATED OMO:0003011 [NeuroNames:112] xref: DHBA:13227 xref: FMA:83779 xref: HBA:9399 xref: neuronames:112 xref: SCTID:279348008 is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus is_a: UBERON:0019303 ! occipital sulcus relationship: part_of UBERON:0002905 {source="HBA"} ! intralingual sulcus [Term] id: UBERON:0035926 name: preculminate fissure of cerebellum namespace: uberon synonym: "fissura preculminalis" EXACT OMO:0003011 [FMA:TA] synonym: "PCF" RELATED OMO:0003000 [HBA:9408] synonym: "postcentral fissure of the cerebellum" RELATED [NeuroNames:652] synonym: "preculminate fissure" EXACT [FMA:83736] xref: FMA:83736 xref: HBA:9408 xref: MBA:1095 xref: neuronames:652 xref: RadLex:RID6871 is_a: UBERON:0003980 {source="FMA"} ! cerebellum fissure [Term] id: UBERON:0035927 name: sulcus of parietal lobe namespace: uberon synonym: "parietal lobe sulci" EXACT OMO:0003004 [HBA:9370] synonym: "parietal lobe sulcus" EXACT [] synonym: "PLs" RELATED OMO:0003000 [HBA:9370] xref: HBA:9370 xref: SCTID:314145001 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0035928 name: dorsolateral part of supraoptic nucleus namespace: uberon synonym: "dorsolateral part of the supraoptic nucleus" RELATED [NeuroNames:3151] synonym: "pars dorsolateralis nuclei supraoptici" EXACT OMO:0003011 [FMA:TA] synonym: "supraoptic nucleus proper" RELATED [NeuroNames:3151] synonym: "supraoptic nucleus, dorsolateral part" RELATED [NeuroNames:3151] synonym: "supraoptic nucleus, proper" RELATED [NeuroNames:3151] xref: FMA:76770 xref: HBA:4594 xref: neuronames:3151 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0001929 ! supraoptic nucleus [Term] id: UBERON:0035930 name: retro-olivary nucleus namespace: uberon synonym: "nucleus retro-olivaris" EXACT OMO:0003011 [FMA:TA] synonym: "retro-olivary cell group" EXACT [FMA:72476] synonym: "RO" RELATED OMO:0003000 [DHBA:12467] xref: DHBA:12467 xref: FMA:72476 xref: HBA:9181 xref: neuronames:575 is_a: UBERON:0007247 {source="FMA"} ! nucleus of superior olivary complex [Term] id: UBERON:0035931 name: sagittal stratum namespace: uberon synonym: "sst" RELATED OMO:0003000 [DHBA:12082] xref: DHBA:12082 xref: FMA:277107 xref: HBA:265505286 is_a: UBERON:0001018 {source="FMA"} ! axon tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0035932 name: anterior segment of paracentral lobule namespace: uberon subset: human_reference_atlas synonym: "anterior part of paracentral lobule" EXACT [FMA:273508] synonym: "medial segment of precentral gyrus" EXACT [FMA:273508] synonym: "paracentral lobule, anterior part" EXACT [HBA:4071] synonym: "PCLa" RELATED OMO:0003000 [HBA:4071] xref: FMA:273508 xref: HBA:4071 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0016525 {source="HBA"} ! frontal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI property_value: http://xmlns.com/foaf/0.1/depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035933 name: paracentral lobule namespace: uberon def: "The junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=404] synonym: "lobulus paracentralis" EXACT OMO:0003011 [FMA:TA] xref: BTO:0005601 xref: FMA:77534 xref: neuronames:1341 xref: RadLex:RID6449 xref: SCTID:279202002 xref: Talairach:1047 xref: Wikipedia:Paracentral_lobule is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0000956 {source="BTO"} ! cerebral cortex [Term] id: UBERON:0035934 name: posterior segment of paracentral lobule namespace: uberon subset: human_reference_atlas synonym: "PCLp" RELATED OMO:0003000 [HBA:4125] synonym: "posterior part of paracentral lobule" EXACT [FMA:273511] xref: FMA:273511 xref: HBA:4125 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0001872 {source="HBA"} ! parietal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035935 name: Meyer's loop of optic radiation namespace: uberon def: "Part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle." [http://radiopaedia.org/articles/meyer-loop] synonym: "inferior optic radiation" EXACT [NeuroNames:1466] synonym: "Meyer's loop" EXACT [] synonym: "or-lp" RELATED OMO:0003000 [HBA:265505214] xref: FMA:280849 xref: HBA:265505214 xref: neuronames:1466 is_a: UBERON:0022259 {source="FMA"} ! white matter radiation is_a: UBERON:0022260 ! radiation of cerebral hemisphere relationship: part_of UBERON:0022264 ! optic radiation property_value: UBPROP:0000012 "in FMA this is disjoint from radiation of cerebral hemisphere, which conflicts with our radiopedia definition" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0035937 name: arcuate fasciculus namespace: uberon def: "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus." [Wikipedia:Arcuate_fasciculus] synonym: "AF" RELATED OMO:0003000 [DHBA:10569] synonym: "arcuate fascicle" EXACT [FMA:276650] synonym: "arcuate fascicle" RELATED [Wikipedia:Arcuate_fasciculus] synonym: "arcuate fasciculus" RELATED [NeuroNames:2063] synonym: "ARF" RELATED OMO:0003000 [HBA:9231] synonym: "cerebral arcuate fasciculus" EXACT [FMA:276650] synonym: "fasciculus arcuatus" EXACT OMO:0003011 [FMA:TA] synonym: "fibrae arcuatae cerebri" RELATED OMO:0003011 [NeuroNames:2063] xref: DHBA:10569 xref: FMA:276650 xref: HBA:9231 xref: neuronames:2063 xref: Wikipedia:Arcuate_fasciculus is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0022246 {source="FMA"} ! superior longitudinal fasciculus relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts [Term] id: UBERON:0035938 name: amiculum of inferior olive namespace: uberon synonym: "ami" RELATED OMO:0003000 [DHBA:12728] synonym: "amiculum of olive" EXACT [FMA:72611] synonym: "amiculum of the olive" EXACT [DHBA:12728] synonym: "amiculum olivae" EXACT [FMA:72611] synonym: "amiculum olivare" EXACT OMO:0003011 [FMA:TA] synonym: "inferior olive amiculum" EXACT [FMA:72611] xref: DHBA:12728 xref: FMA:72611 xref: HBA:265505538 xref: neuronames:752 is_a: UBERON:0019262 ! white matter of myelencephalon is_a: UBERON:0035939 {source="FMA"} ! amiculum relationship: part_of UBERON:0019262 {source="HBA"} ! white matter of myelencephalon [Term] id: UBERON:0035939 name: amiculum namespace: uberon def: "A dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus." [http://medical-dictionary.thefreedictionary.com/amicula] synonym: "amicula" RELATED OMO:0003004 [] xref: FMA:83870 xref: RadLex:RID6708 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0035940 name: central medullary reticular nuclear complex namespace: uberon synonym: "central group (medullary reticular formation)" EXACT [FMA:70663] synonym: "central group (medullary reticular formation)" RELATED [NeuroNames:729] synonym: "central medullary reticular complex" EXACT [FMA:70663] synonym: "central medullary reticular group" EXACT [FMA:70663] synonym: "central medullary reticular group" RELATED [NeuroNames:729] synonym: "CMRt" RELATED OMO:0003000 [HBA:9588] synonym: "nuclei centrales myelencephali" EXACT OMO:0003011 [FMA:TA] synonym: "nuclei centrales myelencephali" RELATED OMO:0003011 [NeuroNames:729] xref: FMA:70663 xref: HBA:9588 xref: neuronames:729 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="HBA"} ! medullary reticular formation [Term] id: UBERON:0035968 name: bulboid corpuscle namespace: uberon def: "A receptor in the transitional zone between mucous membrane and skin." [ISBN:9780849388118, Wikipedia:Bulboid_corpuscle] synonym: "bulboid corpuscles" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end bulbs" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end bulbs of krause" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end-bulb of krause" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end-bulbs of krause" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "krause corpuscle" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "krause's end-bulbs" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "mucocutaneous corpuscle" RELATED [ISBN:9780849388118] synonym: "mucocutaneous end-organ" RELATED [ISBN:9780849388118] synonym: "spheroidal tactile corpuscles" RELATED [Wikipedia:Bulboid_corpuscle] xref: Wikipedia:Bulboid_corpuscle is_a: UBERON:0012451 ! sensory receptor property_value: IAO:0000232 "Some investigators are doubtful to its existence; or may be a degenerative stage of peripheral nerves[ISBN:9780849388118]" xsd:string [Term] id: UBERON:0035969 name: encapsulated tactile receptor namespace: uberon def: "A tacile mechanoreceptor that lacks a capsule." [UBERON:cjm] synonym: "encapsulated nerve ending" EXACT [FMA:83995] xref: FMA:83995 is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor [Term] id: UBERON:0035970 name: calcar avis of the lateral ventricle namespace: uberon def: "On the medial wall of the posterior cornu of the lateral ventricle is a longitudinal eminence, the calcar avis (hippocampus minor), which is an involution of the ventricular wall produced by the calcarine fissure. It is sometimes visible on ultrasonogram." [Wikipedia:Calcar_avis] synonym: "CalA" RELATED OMO:0003000 [DHBA:12095] synonym: "calcar" RELATED [BTO:0004691] synonym: "calcar avis" RELATED [BTO:0004691] synonym: "calcarine spur" RELATED [BTO:0004691] synonym: "ergot" RELATED [BTO:0004691] synonym: "Haller unguis" RELATED [BTO:0004691] synonym: "hippocampus minor" EXACT [BTO:0004691] synonym: "minor hippocampus" RELATED [BTO:0004691] synonym: "Morand spur" RELATED [BTO:0004691] synonym: "pes hippocampi minor" RELATED OMO:0003011 [NeuroNames:210] synonym: "unguis avis" RELATED [BTO:0004691] xref: BTO:0004691 xref: DHBA:12095 xref: FMA:83707 xref: neuronames:210 xref: SCTID:369271006 xref: Wikipedia:Calcar_avis is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002421 {source="BTO"} ! hippocampal formation [Term] id: UBERON:0035971 name: postsubiculum namespace: uberon def: "Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture." [NLX:144245] synonym: "POST" RELATED OMO:0003000 [MBA:1037] synonym: "postsubicular cortex" RELATED [NLX:144245] xref: MBA:1037 xref: neuronames:1105 xref: NLX:144245 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0022230 {source="MBA"} ! retrohippocampal region [Term] id: UBERON:0035972 name: interanterodorsal nucleus of the thalamus namespace: uberon def: "A group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info)." [NLX:144468] synonym: "IAD" RELATED OMO:0003000 [MBA:1113] synonym: "interanterodorsal nucleus of thalamus" RELATED [NLX:144468] synonym: "interanterodorsal nucleus of the thalamus" RELATED [NeuroNames:1273] synonym: "interanterodorsal nucleus thalamus" RELATED [NeuroNames:1273] synonym: "interanterodorsal thalamic nucleus" RELATED [NeuroNames:1273] synonym: "nucleus commissura interanterodorsalis" RELATED OMO:0003011 [NeuroNames:1273] synonym: "nucleus interanterodorsalis" RELATED OMO:0003011 [NeuroNames:1273] xref: MBA:1113 xref: neuronames:1273 xref: NLX:144468 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001897 {source="NIFSTD"} ! dorsal plus ventral thalamus relationship: part_of UBERON:0002788 {source="MBA"} ! anterior nuclear group [Term] id: UBERON:0035973 name: nucleus incertus namespace: uberon def: "Distinct cell group in caudoventral regions of the pontine periventricular gray, adjacent to the ventromedial border of the caudal dorsal tegmental nucleus." [NLX:144477] synonym: "central Gray pars 0" RELATED [NLX:144477] synonym: "central Gray part alpha" RELATED [NLX:144477] synonym: "charles Watson. - 5th ed.)" RELATED [NLX:144477] synonym: "Inc" RELATED OMO:0003000 [DMBA:17084] synonym: "NI" RELATED OMO:0003000 [DHBA:146034972, MBA:604] synonym: "NI, CG0, CGalpha, CGbeta" RELATED OMO:0003000 [NLX:144477] synonym: "nucleus incertus (Streeter)" RELATED [NeuroNames:1093] xref: DHBA:146034972 xref: DMBA:17084 xref: MBA:604 xref: neuronames:1093 xref: NLX:144477 is_a: UBERON:0000125 {source="cjm"} ! neural nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0035974 name: anteroventral preoptic nucleus namespace: uberon synonym: "anteroventral preoptic nuclei" RELATED OMO:0003004 [NLX:17240] synonym: "AVP" RELATED OMO:0003000 [MBA:263] xref: MBA:263 xref: neuronames:1813 xref: NLX:17240 is_a: UBERON:0000125 {source="cjm"} ! neural nucleus is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 {source="NIFSTD"} ! preoptic area [Term] id: UBERON:0035975 name: intergeniculate leaflet of the lateral geniculate complex namespace: uberon synonym: "IGL" RELATED OMO:0003000 [MBA:27] synonym: "intergeniculate leaflet of the lateral geniculate complex" RELATED [NeuroNames:1956] synonym: "intergeniculate leaflet, lateral geniculate complex" RELATED [NeuroNames:1956] synonym: "lateral geniculate complex, intergeniculate leaflet" RELATED [NeuroNames:1956] xref: MBA:27 xref: neuronames:1956 xref: NLX:144470 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain relationship: part_of UBERON:0001926 {source="NIFSTD"} ! lateral geniculate body [Term] id: UBERON:0035976 name: accessory abducens nucleus namespace: uberon def: "A small cluster of neurons in the pontine reticular formation in some mammals, containing the majority of motoneurons innervating thenretractor bulbi muscles of the eye." [NLX:144454] synonym: "ACVI" RELATED OMO:0003000 [MBA:568] xref: MBA:568 xref: neuronames:1860 xref: NLX:144454 is_a: UBERON:0000125 {source="cjm"} ! neural nucleus is_a: UBERON:0007413 ! nucleus of pontine reticular formation relationship: part_of UBERON:0002573 {source="nlx-text-mined"} ! pontine reticular formation [Term] id: UBERON:0035977 name: bed nucleus of the accessory olfactory tract namespace: uberon def: "A group of cells near the surface of the brain between the supraoptic nucleus and the cortical amygdalar nucleus in the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ). It is one of five subdivisions of the medial amygdalar nucleus." [NeuroNames:1179] synonym: "accessory olfactory formation" RELATED [NeuroNames:1179] synonym: "BA" RELATED OMO:0003000 [MBA:292] synonym: "bed nucleus accessory olfactory tract (Scalia-Winans)" RELATED [NeuroNames:1179] synonym: "bed nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] synonym: "nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] xref: MBA:292 xref: neuronames:1179 is_a: UBERON:0000125 {source="cjm"} ! neural nucleus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002892 ! medial amygdaloid nucleus [Term] id: UBERON:0035999 name: dopaminergic cell groups namespace: uberon def: "Collections of neurons in the central nervous system that have been demonstrated by histochemical fluorescence to contain the neurotransmitter dopamine ( Fuxe-1970 )." [NeuroNames:3138] synonym: "DA cell groups" RELATED [NeuroNames:3138] synonym: "dopaminergic cell groups" RELATED [NeuroNames:3138] synonym: "dopaminergic nuclei" RELATED [NeuroNames:3138] xref: neuronames:3138 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0036000 name: A8 dopaminergic cell group namespace: uberon synonym: "A8 cell group" RELATED [NeuroNames:1061] synonym: "A8 dopamine cells" RELATED [NeuroNames:1061] synonym: "dopaminergic group A8" RELATED [NeuroNames:1061] synonym: "lateral midbrain reticular formation A8 group" RELATED [NeuroNames:1061] xref: neuronames:1061 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036001 name: A14 dopaminergic cell group namespace: uberon synonym: "A14 cell group" RELATED [NeuroNames:1200] synonym: "A14 dopamine cells" RELATED [NeuroNames:1200] synonym: "cell group A14" RELATED [NeuroNames:1200] synonym: "dopaminergic group A14" RELATED [NeuroNames:1200] xref: neuronames:1200 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036002 name: A15 dopaminergic cell group namespace: uberon synonym: "A15 cell group" RELATED [NeuroNames:1798] synonym: "dopaminergic group A15" RELATED [NeuroNames:1798] xref: neuronames:1798 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036003 name: A9 dopaminergic cell group namespace: uberon synonym: "A9 cell group" RELATED [NeuroNames:1811] synonym: "dopaminergic group A9" RELATED [NeuroNames:1811] xref: neuronames:1811 xref: NLX:54027 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036004 name: A17 dopaminergic cell group namespace: uberon synonym: "A17 cell group" RELATED [NeuroNames:1832] synonym: "dopaminergic group A17" RELATED [NeuroNames:1832] xref: neuronames:1832 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036005 name: A10 dopaminergic cell group namespace: uberon synonym: "A10 cell group" RELATED [NeuroNames:1835] synonym: "dopaminergic group A10" RELATED [NeuroNames:1835] xref: neuronames:1835 xref: NLX:144071 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036006 name: A11 dopaminergic cell group namespace: uberon synonym: "A11 cell group" RELATED [NeuroNames:1850] synonym: "A11 dopamine cells" RELATED [NeuroNames:1850] synonym: "dopaminergic group A11" RELATED [NeuroNames:1850] xref: neuronames:1850 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036007 name: A13 dopaminergic cell group namespace: uberon def: "A group of cells that fluoresce for dopamine and are distributed in clusters that, in the primate, are ventral and medial to the mammillothalamic tract of the hypothalamus; a few extend into the reuniens nucleus of the thalamus (Felten-1983). In the mouse A13 is located ventral to the mammillothalamic tract of the thalamus in the zona incerta (adapted from Brain Info)." [NLX:91101] synonym: "A13" RELATED OMO:0003000 [MBA:796] synonym: "A13 cell group" RELATED [NeuroNames:1851] synonym: "A13 dopamine cells" RELATED [NeuroNames:1851] synonym: "dopaminergic group A13" RELATED [NeuroNames:1851] synonym: "zona incerta, dopaminergic group" RELATED [NeuroNames:1851] xref: MBA:796 xref: neuronames:1851 xref: NLX:91101 is_a: UBERON:0035999 ! dopaminergic cell groups relationship: part_of UBERON:0001907 {source="MBA"} ! zona incerta [Term] id: UBERON:0036008 name: A16 dopaminergic cell group namespace: uberon synonym: "A16 cell group" RELATED [NeuroNames:1867] synonym: "dopaminergic group A16" RELATED [NeuroNames:1867] xref: neuronames:1867 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036009 name: A12 dopaminergic cell group namespace: uberon synonym: "A12 cell group" RELATED [NeuroNames:1880] synonym: "A12 dopamine cells" RELATED [NeuroNames:1880] synonym: "dopaminergic group A12" RELATED [NeuroNames:1880] xref: neuronames:1880 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036010 name: Aaq dopaminergic cell group namespace: uberon synonym: "Aaq cell group" RELATED [NeuroNames:1889] synonym: "dopaminergic group Aaq" RELATED [NeuroNames:1889] xref: neuronames:1889 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036011 name: telencephalic dopaminergic cell group namespace: uberon synonym: "telencephalic DA cell group" RELATED [NeuroNames:1770] synonym: "telencephalic DA neurons" RELATED [NeuroNames:1770] synonym: "telencephalic dopamine cells" RELATED [NeuroNames:1770] synonym: "telencephalic dopaminergic group" RELATED [NeuroNames:1770] xref: neuronames:1770 is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036012 name: nucleus of the brachium of the inferior colliculus namespace: uberon synonym: "brachial nucleus of the inferior colliculus" RELATED [NeuroNames:1112] synonym: "BrC" RELATED OMO:0003000 [HBA:9483] synonym: "NB" RELATED OMO:0003000 [MBA:580] synonym: "nucleus brachium inferior colliculus" RELATED [NeuroNames:1112] synonym: "nucleus of the brachium of the inferior colliculus" RELATED [NeuroNames:1112] xref: HBA:9483 xref: MBA:580 xref: neuronames:1112 xref: NLX:144476 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0002314 {source="HBA"} ! midbrain tectum [Term] id: UBERON:0036043 name: paravermic lobule X namespace: uberon synonym: "paravermis, flocculonodular lobe portion" RELATED [DHBA:12389] synonym: "PV-X" RELATED OMO:0003000 [HBA:4730] xref: DHBA:12389 xref: HBA:4730 is_a: UBERON:0027285 {source="cjm"} ! paravermis lobule area is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion relationship: part_of UBERON:0001063 {source="HBA"} ! flocculus [Term] id: UBERON:0036044 name: cerebellum vermis lobule VIIAf namespace: uberon synonym: "CbVIIa1" RELATED OMO:0003000 [DHBA:12846] synonym: "lobule VIIAf/crus I (folium and superior semilunar lobule)" EXACT [DHBA:12846] synonym: "VIIAf" EXACT OMO:0003000 [HBA:4706] xref: DHBA:12846 xref: HBA:4706 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermis [Term] id: UBERON:0036063 name: quadrangular lobule namespace: uberon xref: FMA:272300 is_a: UBERON:0004003 {source="FMA"} ! cerebellum hemisphere lobule [Term] id: UBERON:0036065 name: cerebellum vermis lobule VIIAt namespace: uberon synonym: "CbVIIa2" RELATED OMO:0003000 [DHBA:12847] synonym: "lobule VIIAt/crus II (tuber and inferior semilunar lobule)" EXACT [DHBA:12847] synonym: "VIIAt" EXACT OMO:0003000 [HBA:4707] xref: DHBA:12847 xref: HBA:4707 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0004002 {source="DHBA"} ! posterior lobe of cerebellum relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermis [Term] id: UBERON:0036143 name: meningeal branch of mandibular nerve namespace: uberon def: "The meningeal branch of the mandibular nerve (recurrent branch, nervus spinosus) is a branch of the mandibular nerve that supplies the dura mater." [Wikipedia:Meningeal_branch_of_the_mandibular_nerve] synonym: "nervus spinosus" EXACT OMO:0003011 [FMA:TA] synonym: "nervus spinosus" RELATED [Wikipedia:Meningeal_branch_of_the_mandibular_nerve] synonym: "ramus meningeus (Nervus mandibularis)" EXACT [FMA:53047] synonym: "ramus meningeus nervus mandibularis" EXACT OMO:0003011 [FMA:TA] xref: FMA:53047 xref: SCTID:280249002 xref: Wikipedia:Meningeal_branch_of_the_mandibular_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000375 ! mandibular nerve [Term] id: UBERON:0036145 name: glymphatic system namespace: uberon def: "Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [DOI:10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] xref: EMAPA:37872 {source="MA:th"} xref: MESH:D000077502 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001016 ! nervous system property_value: UBPROP:0000009 "hypothesized to be have roles such as waste clearance, distribution of compounds" xsd:string [Term] id: UBERON:0036164 name: ambient gyrus namespace: uberon def: "A rostral part of the parahippocampal gyrus." [NeuroNames:2072] synonym: "AG" RELATED OMO:0003000 [DHBA:12166] synonym: "ambiens gyrus" EXACT [DHBA:12166] synonym: "gyrus ambiens" EXACT OMO:0003011 [DHBA:12166] synonym: "limen insula" RELATED [NeuroNames:2072] xref: DHBA:12166 xref: neuronames:2072 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain relationship: part_of UBERON:0034773 {source="DHBA"} ! uncus of parahippocampal gyrus property_value: UBPROP:0000013 "Some authors regard it as part of the gyrus underlying the uncus ( Ture-1999 ), others as a synonym for limen insula." xsd:string [Term] id: UBERON:0036177 name: nucleus recessus namespace: uberon def: "The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach." [BTO:0003662, ISSN:1505-0297] is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0036216 name: tympanic nerve namespace: uberon def: "The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear." [Wikipedia:Tympanic_nerve] subset: human_reference_atlas synonym: "jacobson%27s nerve" RELATED [Wikipedia:Tympanic_nerve] synonym: "nerve of jacobson" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic branch" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic branch of the glossopharyngeal" RELATED [Wikipedia:Tympanic_nerve] xref: FMA:53480 xref: SCTID:280289008 xref: Wikipedia:Tympanic_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001649 ! glossopharyngeal nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0036218 name: secondary prosencephalon namespace: uberon def: "The most anterior region of the forebrain including both the telencephalon and the hypothalamus in the prosomeric model." [DOI:10.1111/dgd.12348, https://github.com/obophenotype/uberon/issues/1322] comment: may contain the optic recess region (ORR) in the new model proposed by Yamamoto et al. 2017 (see https://www.ncbi.nlm.nih.gov/pubmed/28470718) synonym: "SP" RELATED OMO:0003000 [DMBA:15567] xref: DMBA:15567 is_a: UBERON:0002616 {source="DMBA"} ! regional part of brain relationship: part_of UBERON:0001890 {source="DMBA", source="DOI:10.1111/dgd.12348"} ! forebrain [Term] id: UBERON:0036224 name: corticobulbar and corticospinal tracts namespace: uberon def: "The corticobulbar and corticospinal tracts combined." [https://github.com/obophenotype/uberon/issues/553] synonym: "pyramidal tract" BROAD INCONSISTENT [BIRNLEX:1464, MP:0002878, neuronames:1320] xref: Wikipedia:Pyramidal_tracts is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter [Term] id: UBERON:0036264 name: zygomaticotemporal nerve namespace: uberon def: "The zygomaticotemporal nerve or zygomaticotemporal branch (temporal branch) is derived from the maxillary branch of the trigeminal nerve (Cranial nerve V). It runs along the lateral wall of the orbit in a groove in the zygomatic bone, receives a branch of communication from the lacrimal, and passes through zygomaticotemporal foramen in the zygomatic bone to enter the temporal fossa. It ascends between the bone, and substance of the Temporalis muscle, pierces the temporal fascia about 2.5 cm. above the zygomatic arch, and is distributed to the skin of the side of the forehead, and communicates with the facial nerve and with the auriculotemporal branch of the mandibular nerve. As it pierces the temporal fascia, it gives off a slender twig, which runs between the two layers of the fascia to the lateral angle of the orbit." [Wikipedia:Zygomaticotemporal_nerve] synonym: "ramus zygomaticotemporalis (Nervus zygomaticus)" EXACT [FMA:52972] synonym: "ramus zygomaticotemporalis nervus zygomatici" EXACT OMO:0003011 [FMA:TA] synonym: "zygomaticotemporal" RELATED [Wikipedia:Zygomaticotemporal_nerve] synonym: "zygomaticotemporal branch" RELATED [Wikipedia:Zygomaticotemporal_nerve] synonym: "zygomaticotemporal branch of zygomatic nerve" EXACT [FMA:52972] xref: FMA:52972 xref: SCTID:280243001 xref: Wikipedia:Zygomaticotemporal_nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000377 ! maxillary nerve [Term] id: UBERON:0036303 name: vasculature of central nervous system namespace: uberon xref: FMA:259905 relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0036654 name: wall of lateral ventricle namespace: uberon xref: FMA:242772 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002285 {source="FMA"} ! telencephalic ventricle [Term] id: UBERON:0036655 name: wall of cerebral aqueduct namespace: uberon xref: FMA:242774 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002289 {source="FMA"} ! midbrain cerebral aqueduct [Term] id: UBERON:0036656 name: wall of third ventricle namespace: uberon xref: FMA:242776 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002286 {source="FMA"} ! third ventricle [Term] id: UBERON:0036657 name: wall of fourth ventricle namespace: uberon xref: FMA:242778 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain relationship: part_of UBERON:0002422 {source="FMA"} ! fourth ventricle [Term] id: UBERON:0036658 name: wall of central canal of spinal cord namespace: uberon synonym: "wall of central canal" EXACT [FMA:242780] xref: FMA:242780 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system relationship: part_of UBERON:0002291 {source="FMA"} ! central canal of spinal cord [Term] id: UBERON:0036661 name: wall of ventricular system of brain namespace: uberon xref: FMA:242841 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system relationship: part_of UBERON:0005282 {source="FMA"} ! ventricular system of brain [Term] id: UBERON:0039175 name: subarachnoid space of brain namespace: uberon xref: FMA:322073 is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0039176 name: subarachnoid space of spinal cord namespace: uberon xref: FMA:322074 is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0700019 name: parallel fiber namespace: uberon def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it synapses on the dendritic branches of Purkinje cells and stellate cells." [doi:10.1007/978-94-007-1333-8_63, GO:1990032] comment: This a grouping class for parallel fibers in any species. If annotating a parallel fiber in any species other than teleost fish, consider using 'parallel fiber, bifurcated'. is_a: UBERON:0006134 ! nerve fiber is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002037 ! cerebellum property_value: http://purl.org/dc/terms/date "2023-07-10T11:45:59Z" xsd:dateTime [Term] id: UBERON:0700020 name: parallel fiber, bifurcated namespace: uberon def: "A parallel fiber that results from the bifurcation of a cerebellar granule cell axon in the molecular layer into two diametrically opposed branches, that are oriented parallel to the long axis of the folium." [GO:1990032] is_a: UBERON:0700019 ! parallel fiber property_value: http://purl.org/dc/terms/date "2023-07-10T11:53:19Z" xsd:dateTime property_value: RO:0002161 NCBITaxon:70862 [Term] id: UBERON:2000116 name: macula lagena namespace: uberon xref: ZFA:0000116 relationship: part_of UBERON:0002518 ! otolith organ property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000120 name: lateral line ganglion namespace: uberon def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFA:0000120, ZFA:curator] subset: efo_slim synonym: "lateral line ganglia" EXACT OMO:0003004 [TAO:0000120] synonym: "LLG" EXACT OMO:0003000 [TAO:0000120] xref: EFO:0003493 xref: TAO:0000120 xref: XAO:0004457 xref: ZFA:0000120 is_a: UBERON:0001714 ! cranial ganglion [Term] id: UBERON:2000165 name: inferior lobe namespace: uberon synonym: "inferior lobes" EXACT OMO:0003004 [TAO:0000165] xref: ZFA:0000165 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000168 name: anterior macula namespace: uberon def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)." [ZFIN:curator] synonym: "am" EXACT [TAO:0000168] xref: ZFA:0000168 relationship: part_of UBERON:0002518 ! otolith organ property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000174 name: caudal cerebellar tract namespace: uberon xref: ZFA:0000174 is_a: UBERON:0002317 ! white matter of cerebellum relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000175 name: posterior lateral line nerve namespace: uberon def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:curator] synonym: "caudal lateral line nerve" EXACT [TAO:0000175] xref: ZFA:0000175 is_a: UBERON:0008906 ! lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000176 name: lateral entopeduncular nucleus namespace: uberon is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000204 ! ventral part of telencephalon property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000182 name: central caudal thalamic nucleus namespace: uberon synonym: "central posterior thalamic nucleus" EXACT [TAO:0000182] xref: ZFA:0000182 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 ! dorsal thalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000183 name: central pretectum namespace: uberon xref: ZFA:0000183 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001944 ! pretectal region property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000185 name: commissura rostral, pars ventralis namespace: uberon def: "Part of the anterior commissure which abuts the preoptic region dorsally." [ISBN:3764351209] xref: ZFA:0000185 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0000935 ! anterior commissure property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000187 name: lateral granular eminence namespace: uberon is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000307 ! vestibulolateralis lobe property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000188 name: corpus cerebelli namespace: uberon synonym: "cerebellar corpus" EXACT [TAO:0000188] synonym: "corpus cerebellum" EXACT [TAO:0000188] xref: MESH:D002531 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ZFA:0000188 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000193 name: diffuse nuclei namespace: uberon xref: ZFA:0000193 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000165 ! inferior lobe property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000194 name: dorsal accessory optic nucleus namespace: uberon xref: ZFA:0000194 is_a: UBERON:0035566 ! central pretectal nucleus relationship: part_of UBERON:2000183 ! central pretectum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000199 name: dorsal periventricular hypothalamus namespace: uberon xref: ZFA:0000199 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000209 name: lateral preglomerular nucleus namespace: uberon xref: ZFA:0000209 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000210 name: gigantocellular part of magnocellular preoptic nucleus namespace: uberon xref: ZFA:0000210 relationship: part_of UBERON:0001928 ! preoptic area property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000212 name: granular eminence namespace: uberon xref: ZFA:0000212 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000222 name: isthmic primary nucleus namespace: uberon xref: ZFA:0000222 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000234 name: macula neglecta namespace: uberon def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234] xref: ZFA:0000234 relationship: part_of UBERON:0002518 ! otolith organ property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000238 name: olfactory tract linking bulb to ipsilateral ventral telencephalon namespace: uberon xref: ZFA:0000238 is_a: UBERON:0002265 ! olfactory tract property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000241 name: midline column namespace: uberon xref: ZFA:0000241 relationship: part_of UBERON:0002559 ! medullary reticular formation property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000245 name: nucleus of the descending root namespace: uberon xref: ZFA:0000245 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000248 name: magnocellular preoptic nucleus namespace: uberon xref: ZFA:0000248 is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000267 name: primary olfactory fiber layer namespace: uberon xref: ZFA:0000267 relationship: part_of UBERON:0002264 ! olfactory bulb property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000274 name: rostral octaval nerve sensory nucleus namespace: uberon xref: ZFA:0000274 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000276 name: rostrolateral thalamic nucleus of Butler & Saidel namespace: uberon xref: ZFA:0000276 is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 ! ventral thalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000278 name: secondary gustatory nucleus medulla oblongata namespace: uberon xref: ZFA:0000278 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000280 name: medial division namespace: uberon xref: ZFA:0000280 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000291 name: medial octavolateralis nucleus namespace: uberon def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [ZFA:0000291] xref: ZFA:0000291 is_a: UBERON:2000381 ! lateral line sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000293 name: synencephalon namespace: uberon xref: BTO:0006476 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000293 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000294 name: torus lateralis namespace: uberon xref: ZFA:0000294 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000296 name: uncrossed tecto-bulbar tract namespace: uberon xref: ZFA:0000296 is_a: UBERON:0002164 ! tectobulbar tract relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000297 name: vagal lobe namespace: uberon synonym: "nX" RELATED [TAO:0000297] xref: BTO:0006431 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000305 name: ventral sulcus namespace: uberon xref: ZFA:0000305 relationship: part_of UBERON:0001898 ! hypothalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000307 name: vestibulolateralis lobe namespace: uberon xref: ZFA:0000307 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000315 name: asteriscus namespace: uberon synonym: "lagenar otolith" EXACT [TAO:0000315] synonym: "lagenolith" EXACT [TAO:0000315] xref: ZFA:0000315 is_a: UBERON:0002280 ! otolith property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000318 name: brainstem and spinal white matter namespace: uberon def: "CNS white matter that is part of the brain stem or spinal cord." [ZFIN] synonym: "brain stem/spinal tracts and commissures" EXACT OMO:0003004 [TAO:0000318] xref: ZFA:0000318 is_a: UBERON:0002316 ! white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000322 name: caudal octaval nerve sensory nucleus namespace: uberon xref: ZFA:0000322 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000324 name: caudal periventricular hypothalamus namespace: uberon xref: ZFA:0000324 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000634 ! caudal zone of median tuberal portion of hypothalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000335 name: crossed tecto-bulbar tract namespace: uberon xref: ZFA:0000335 is_a: UBERON:0002164 ! tectobulbar tract relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000347 name: dorsal zone of median tuberal portion of hypothalamus namespace: uberon is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000352 name: external cellular layer namespace: uberon xref: ZFA:0000352 relationship: part_of UBERON:0002264 ! olfactory bulb property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000358 name: granular layer corpus cerebelli namespace: uberon xref: ZFA:0000358 relationship: part_of UBERON:2000188 ! corpus cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000372 name: interpeduncular nucleus medulla oblongata namespace: uberon xref: ZFA:0000372 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000381 name: lateral line sensory nucleus namespace: uberon xref: ZFA:0000381 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000388 name: medial caudal lobe namespace: uberon xref: ZFA:0000388 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000307 ! vestibulolateralis lobe property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000389 name: medial funicular nucleus medulla oblongata namespace: uberon xref: ZFA:0000389 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000390 name: medial preglomerular nucleus namespace: uberon xref: ZFA:0000390 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000392 name: median tuberal portion namespace: uberon def: "Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] xref: ZFA:0000392 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001898 ! hypothalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000394 name: molecular layer corpus cerebelli namespace: uberon xref: ZFA:0000394 relationship: part_of UBERON:2000188 ! corpus cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000397 name: nucleus subglomerulosis namespace: uberon xref: ZFA:0000397 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000398 name: nucleus isthmi namespace: uberon xref: ZFA:0000398 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000399 name: secondary gustatory nucleus trigeminal nuclei namespace: uberon xref: ZFA:0000399 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000401 name: octaval nerve sensory nucleus namespace: uberon comment: TO DO: see DOI: 10.1002/cne.902660403 for next steps in defining different octaval nerve nuclei. xref: ZFA:0000401 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000408 name: periventricular nucleus of caudal tuberculum namespace: uberon xref: ZFA:0000408 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000425 name: anterior lateral line nerve namespace: uberon def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [ZFIN:curator] synonym: "rostral lateral line nerve" EXACT [TAO:0000425] xref: ZFA:0000425 is_a: UBERON:0008906 ! lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000426 name: rostral parvocellular preoptic nucleus namespace: uberon xref: ZFA:0000426 is_a: UBERON:0007251 ! preoptic nucleus is_a: UBERON:2002219 ! parvocellular preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000430 name: secondary gustatory tract namespace: uberon xref: ZFA:0000430 is_a: UBERON:0014649 ! white matter of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000440 name: superior raphe nucleus namespace: uberon synonym: "anterior raphe nucleus" EXACT [TAO:0000440] xref: ZFA:0000440 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0004684 ! raphe nuclei property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000448 name: tertiary gustatory nucleus namespace: uberon xref: ZFA:0000448 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000449 name: torus longitudinalis namespace: uberon xref: ZFA:0000449 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002314 ! midbrain tectum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000454 name: ventral accessory optic nucleus namespace: uberon xref: ZFA:0000454 is_a: UBERON:0035566 ! central pretectal nucleus relationship: part_of UBERON:2000183 ! central pretectum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000459 name: ventromedial thalamic nucleus namespace: uberon xref: ZFA:0000459 is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 ! ventral thalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000475 name: paraventricular organ namespace: uberon xref: ZFA:0000475 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000479 name: caudal mesencephalo-cerebellar tract namespace: uberon xref: ZFA:0000479 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000480 name: caudal octavolateralis nucleus namespace: uberon def: "Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] xref: ZFA:0000480 is_a: UBERON:2000381 ! lateral line sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000481 name: caudal preglomerular nucleus namespace: uberon xref: ZFA:0000481 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000482 name: caudal tuberal nucleus namespace: uberon synonym: "posterior tuberal nucleus" EXACT [TAO:0000482] xref: ZFA:0000482 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000485 name: central nucleus inferior lobe namespace: uberon synonym: "central nucleus inferior lobes" EXACT OMO:0003004 [TAO:0000485] xref: ZFA:0000485 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000165 ! inferior lobe property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000502 name: dorsal motor nucleus trigeminal nerve namespace: uberon synonym: "motor nucleus V" RELATED [TAO:0000502] synonym: "nV" RELATED [TAO:0000502] xref: ZFA:0000502 is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000512 name: facial lobe namespace: uberon xref: ZFA:0000512 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000516 name: periventricular grey zone namespace: uberon xref: ZFA:0000516 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001945 ! superior colliculus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000517 name: glossopharyngeal lobe namespace: uberon xref: ZFA:0000517 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000523 name: inferior reticular formation namespace: uberon xref: ZFA:0000523 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:2000542 ! medial column property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000530 name: lapillus namespace: uberon synonym: "utricular otolith" EXACT [TAO:0000530] synonym: "utriculith" EXACT [TAO:0000530] xref: ZFA:0000530 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000532 name: lateral division namespace: uberon xref: ZFA:0000532 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000540 name: magnocellular octaval nucleus namespace: uberon xref: ZFA:0000540 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000542 name: medial column namespace: uberon xref: ZFA:0000542 relationship: part_of UBERON:0002559 ! medullary reticular formation property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000551 name: nucleus lateralis valvulae namespace: uberon def: "Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem." [ZFA:0000551, ZFIN:ZDB-PUB-100601-20, ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000551 xref: ZFA:0000551 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="ZFA"} ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000573 name: internal cellular layer namespace: uberon xref: ZFA:0000573 relationship: part_of UBERON:0002264 ! olfactory bulb property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000579 name: rostral mesencephalo-cerebellar tract namespace: uberon xref: ZFA:0000579 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000580 name: rostral preglomerular nucleus namespace: uberon xref: ZFA:0000580 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000581 name: rostral tuberal nucleus namespace: uberon synonym: "anterior tuberal nucleus" EXACT [TAO:0000581] xref: ZFA:0000581 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000707 ! ventral zone property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000582 name: saccus dorsalis namespace: uberon xref: ZFA:0000582 relationship: part_of UBERON:0001899 ! epithalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000589 name: sulcus ypsiloniformis namespace: uberon xref: ZFA:0000589 relationship: part_of UBERON:0000203 ! pallium property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000593 name: superior reticular formation medial column namespace: uberon xref: ZFA:0000593 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:2000542 ! medial column property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000599 name: torus semicircularis namespace: uberon xref: ZFA:0000599 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002314 ! midbrain tectum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000603 name: valvula cerebelli namespace: uberon def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFA:0000603, ZFA:curator] synonym: "valvula" RELATED [ZFA:0000603] synonym: "valvula cerebellum" EXACT OMO:0003004 [TAO:0000603, ZFA:0000603] xref: TAO:0000603 xref: ZFA:0000603 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 {source="ZFA"} ! cerebellum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000609 name: ventrolateral nucleus namespace: uberon xref: ZFA:0000609 is_a: UBERON:0011214 ! nucleus of midbrain tectum relationship: part_of UBERON:2000599 ! torus semicircularis property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000611 name: visceromotor column namespace: uberon xref: ZFA:0000611 relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000629 name: caudal motor nucleus of abducens namespace: uberon def: "Caudal part of the abducens nucleus that mediates motor function." [PHENOSCAPE] xref: ZFA:0000629 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002682 ! abducens nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000630 name: caudal parvocellular preoptic nucleus namespace: uberon xref: ZFA:0000630 is_a: UBERON:0007251 ! preoptic nucleus is_a: UBERON:2002219 ! parvocellular preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000633 name: caudal tuberculum namespace: uberon synonym: "posterior tubercle" EXACT [TAO:0000633] synonym: "posterior tuberculum" EXACT [TAO:0000633] xref: ZFA:0000633 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000634 name: caudal zone of median tuberal portion of hypothalamus namespace: uberon is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000636 name: cerebellar crest namespace: uberon xref: ZFA:0000636 relationship: part_of UBERON:2000291 ! medial octavolateralis nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000638 name: commissura rostral, pars dorsalis namespace: uberon def: "Part of the anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali." [ISBN:3764351209] xref: ZFA:0000638 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0000935 ! anterior commissure property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000639 name: commissure of the secondary gustatory nuclei namespace: uberon xref: ZFA:0000639 is_a: UBERON:0002317 ! white matter of cerebellum relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000643 name: rostral cerebellar tract namespace: uberon xref: ZFA:0000643 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:2000318 ! brainstem and spinal white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000645 name: descending octaval nucleus namespace: uberon xref: ZFA:0000645 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000647 name: dorsal caudal thalamic nucleus namespace: uberon synonym: "dorsal posterior thalamic nucleus" EXACT [TAO:0000647] xref: ZFA:0000647 is_a: UBERON:0015233 ! nucleus of dorsal thalamus relationship: part_of UBERON:0004703 ! dorsal thalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000654 name: rostral motor nucleus of abducens namespace: uberon def: "Rostral part of the abducens nucleus that mediates motor function." [PHENOSCAPE] xref: ZFA:0000654 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002682 ! abducens nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000676 name: sagitta namespace: uberon synonym: "saccular otolith" EXACT [TAO:0000676] synonym: "sacculith" EXACT [TAO:0000676] xref: ZFA:0000676 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000687 name: superficial pretectum namespace: uberon xref: ZFA:0000687 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001944 ! pretectal region property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000693 name: tangential nucleus namespace: uberon xref: ZFA:0000693 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000703 name: ventral motor nucleus trigeminal nerve namespace: uberon xref: ZFA:0000703 is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000707 name: ventral zone namespace: uberon xref: ZFA:0000707 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000710 name: viscerosensory commissural nucleus of Cajal namespace: uberon xref: ZFA:0000710 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000766 name: granular layer valvula cerebelli namespace: uberon xref: ZFA:0000766 relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000779 name: lateral forebrain bundle telencephalon namespace: uberon xref: ZFA:0000779 is_a: UBERON:0011299 ! white matter of telencephalon relationship: part_of UBERON:2007012 ! lateral forebrain bundle property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000815 name: nucleus of medial longitudinal fasciculus of medulla namespace: uberon subset: efo_slim synonym: "nucleus of MLF medulla" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of the medial longitudinal fasciculus medulla oblongata" EXACT [ZFA:0000815] xref: EFO:0003577 xref: TAO:0000815 xref: ZFA:0000815 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="ZFA"} ! medulla oblongata [Term] id: UBERON:2000826 name: central nucleus torus semicircularis namespace: uberon xref: ZFA:0000826 is_a: UBERON:0011214 ! nucleus of midbrain tectum relationship: part_of UBERON:2000599 ! torus semicircularis property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000910 name: medial forebrain bundle telencephalon namespace: uberon xref: ZFA:0000910 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0011299 ! white matter of telencephalon relationship: part_of UBERON:0001910 ! medial forebrain bundle property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000913 name: molecular layer valvula cerebelli namespace: uberon xref: ZFA:0000913 relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000941 name: nucleus of the medial longitudinal fasciculus synencephalon namespace: uberon xref: ZFA:0000941 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000293 ! synencephalon property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000984 name: superior reticular formation tegmentum namespace: uberon xref: ZFA:0000984 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000985 name: ventral rhombencephalic commissure medulla oblongata namespace: uberon xref: ZFA:0000985 is_a: UBERON:0014649 ! white matter of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000997 name: medial funicular nucleus trigeminal nuclei namespace: uberon xref: ZFA:0000997 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001297 name: vagal placode 1 namespace: uberon xref: ZFA:0001297 is_a: UBERON:0003078 ! epibranchial placode property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001298 name: vagal placode 2 namespace: uberon xref: ZFA:0001298 is_a: UBERON:0003078 ! epibranchial placode property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001299 name: vagal placode 3 namespace: uberon xref: ZFA:0001299 is_a: UBERON:0003078 ! epibranchial placode property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001300 name: vagal placode 4 namespace: uberon xref: ZFA:0001300 is_a: UBERON:0003078 ! epibranchial placode property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001302 name: vagal ganglion 1 namespace: uberon synonym: "gX1" EXACT [TAO:0001302] synonym: "nodose ganglion 1" EXACT [TAO:0001302] xref: ZFA:0001302 is_a: UBERON:0009127 ! epibranchial ganglion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001303 name: vagal ganglion 2 namespace: uberon synonym: "gX2" EXACT [TAO:0001303] synonym: "nodose ganglion 2" EXACT [TAO:0001303] xref: ZFA:0001303 is_a: UBERON:0009127 ! epibranchial ganglion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001304 name: vagal ganglion 3 namespace: uberon synonym: "gX3" EXACT [TAO:0001304] synonym: "nodose ganglion 3" EXACT [TAO:0001304] xref: ZFA:0001304 is_a: UBERON:0009127 ! epibranchial ganglion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001305 name: vagal ganglion 4 namespace: uberon synonym: "gX4" EXACT [TAO:0001305] synonym: "nodose ganglion 4" EXACT [TAO:0001305] xref: ZFA:0001305 is_a: UBERON:0009127 ! epibranchial ganglion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001312 name: dorsal anterior lateral line ganglion namespace: uberon subset: efo_slim synonym: "anterodorsal lateral line ganglion" EXACT [TAO:0001312] xref: EFO:0003674 xref: TAO:0001312 xref: ZFA:0001312 is_a: UBERON:2001391 ! anterior lateral line ganglion [Term] id: UBERON:2001313 name: ventral anterior lateral line ganglion namespace: uberon synonym: "anteroventral lateral line ganglion" EXACT [TAO:0001313] xref: ZFA:0001313 is_a: UBERON:2001391 ! anterior lateral line ganglion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001314 name: posterior lateral line ganglion namespace: uberon def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator] xref: ZFA:0001314 is_a: UBERON:2000120 ! lateral line ganglion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001340 name: nucleus of the tract of the postoptic commissure namespace: uberon def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [ZFIN:curator] synonym: "ntPOC" EXACT [TAO:0001340] xref: ZFA:0001340 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001341 name: intervening zone namespace: uberon def: "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003." [ZFIN:curator] synonym: "IZ" EXACT [TAO:0001341] xref: ZFA:0001341 relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001343 name: telencephalon diencephalon boundary namespace: uberon xref: ZFA:0001343 relationship: part_of UBERON:0001890 ! forebrain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001347 name: stratum fibrosum et griseum superficiale namespace: uberon xref: ZFA:0001347 relationship: part_of UBERON:0001945 ! superior colliculus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001348 name: stratum marginale namespace: uberon xref: ZFA:0001348 relationship: part_of UBERON:0001945 ! superior colliculus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001349 name: stratum opticum namespace: uberon xref: ZFA:0001349 relationship: part_of UBERON:0001945 ! superior colliculus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001352 name: stratum periventriculare namespace: uberon xref: ZFA:0001352 relationship: part_of UBERON:0001945 ! superior colliculus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001357 name: alar plate midbrain namespace: uberon xref: ZFA:0001357 relationship: part_of UBERON:0001891 ! midbrain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001366 name: tract of the postoptic commissure namespace: uberon synonym: "TPOC" EXACT [TAO:0001366] xref: ZFA:0001366 is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0003936 ! postoptic commissure property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001391 name: anterior lateral line ganglion namespace: uberon def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] subset: efo_slim synonym: "anterior lateral line ganglia" RELATED OMO:0003004 [TAO:0001391] xref: EFO:0003683 xref: TAO:0001391 xref: ZFA:0001391 is_a: UBERON:2000120 ! lateral line ganglion [Term] id: UBERON:2001480 name: dorsal anterior lateral line nerve namespace: uberon def: "Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts." [ZFIN:curator] xref: ZFA:0001480 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000425 ! anterior lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001481 name: ventral anterior lateral line nerve namespace: uberon def: "Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts." [ZFIN:curator] xref: ZFA:0001481 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000425 ! anterior lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001482 name: middle lateral line nerve namespace: uberon def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [ZFIN:curator] xref: ZFA:0001482 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000175 ! posterior lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001483 name: middle lateral line ganglion namespace: uberon def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [ZFIN:curator] xref: ZFA:0001483 is_a: UBERON:2000120 ! lateral line ganglion property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002010 name: hyoideomandibular nerve namespace: uberon def: "Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2." [TAO:wd] xref: ZFA:0005397 is_a: UBERON:0001021 ! nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002105 name: electrosensory lateral line lobe namespace: uberon def: "Anatomical structure located in the hindbrain that receives primary electroreceptor input." [TAO:wd] comment: Definition reference: McNamara, AM., JP Denizot, CD Hopkins. 2005. Comparative Anatomy of the Electrosensory Lateral Line Lobe of Mormyrids: The Mystery of the Missing Map in the Genus Stomatorhinus (Family: Mormyridae). Brain, Behavior and Evolution 65:188-201. synonym: "ELL" EXACT [TAO:0002105] is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002028 ! hindbrain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002106 name: eminentia granularis namespace: uberon def: "Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses." [TAO:wd] comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] synonym: "EG" EXACT [TAO:0002106] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002107 name: medullary command nucleus namespace: uberon def: "Anatomical structure that consists of two neuron types: pacemaker cells and relay cells. The medullary command nucleus commands the timing of the electric organ discharge." [TAO:wd] comment: Definition reference: Moortgat, KT, Bullock, TH, and Sejnowski TJ. 2000. J Neurophysiol 83: 971-983. Precision of the Pacemaker Nucleus in a Weakly Electric Fish: Network Versus Cellular Influences. synonym: "MCN" EXACT [TAO:0002107] synonym: "medullary pacemaker nucleus" EXACT [TAO:0002107] synonym: "pacemaker nucleus" EXACT [TAO:0002107] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002028 ! hindbrain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002174 name: octaval nerve motor nucleus namespace: uberon def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [PMID:17182783] xref: ZFA:0001697 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002175 name: rostral octaval nerve motor nucleus namespace: uberon synonym: "ROLE" EXACT [TAO:0002175] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [TAO:0002175] xref: ZFA:0001698 is_a: UBERON:2002174 ! octaval nerve motor nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002176 name: caudal octaval nerve motor nucleus namespace: uberon xref: ZFA:0001699 is_a: UBERON:2002174 ! octaval nerve motor nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002185 name: climbing fiber namespace: uberon def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] xref: ZFA:0001711 relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002192 name: dorsolateral motor nucleus of vagal nerve namespace: uberon def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhomobomere 8." [ZFIN:ZDB-PUB-090417-11] synonym: "dlX" EXACT [TAO:0002192] xref: ZFA:0001695 is_a: UBERON:2000297 ! vagal lobe property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002202 name: intermediate nucleus namespace: uberon def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2] xref: ZFA:0001669 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002207 name: medial motor nucleus of vagal nerve namespace: uberon synonym: "mmX" EXACT [TAO:0002207] xref: ZFA:0001696 is_a: UBERON:2000297 ! vagal lobe property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002210 name: mossy fiber namespace: uberon xref: ZFA:0001710 relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002218 name: parallel fiber, teleost namespace: uberon def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it does not bifurcate and synapses on the dendritic branches of Purkinje cells and stellate cells. The parallel fibers in teleost fish do not bifurcate in contrast to other vertebrates." [doi:10.1007/978-94-007-1333-8_63] synonym: "parallel fibers" EXACT OMO:0003004 [TAO:0002218] xref: ZFA:0001713 is_a: UBERON:0700019 ! parallel fiber relationship: part_of UBERON:2000394 ! molecular layer corpus cerebelli relationship: part_of UBERON:2000913 ! molecular layer valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002219 name: parvocellular preoptic nucleus namespace: uberon xref: ZFA:0001680 is_a: UBERON:0006569 ! diencephalic nucleus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002226 name: preglomerular nucleus namespace: uberon def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ZFIN:curator] xref: ZFA:0001662 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002240 name: Purkinje cell layer corpus cerebelli namespace: uberon xref: ZFA:0001706 relationship: part_of UBERON:2000188 ! corpus cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002241 name: Purkinje cell layer valvula cerebelli namespace: uberon xref: ZFA:0001709 relationship: part_of UBERON:2000603 ! valvula cerebelli property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002244 name: supraoptic tract namespace: uberon synonym: "SOT" EXACT [TAO:0002244] xref: ZFA:0001657 is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0000955 ! brain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005020 name: central artery namespace: uberon def: "Arteries that irrigate the forebrain and midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "CtA" EXACT [TAO:0005020] xref: ZFA:0005020 is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:0008998 ! vasculature of brain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005021 name: cerebellar central artery namespace: uberon def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC Isogai et al. 2001." [ZFIN:curator] synonym: "CCtA" EXACT [TAO:0005021] xref: ZFA:0005021 is_a: UBERON:2005020 ! central artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005031 name: dorsal longitudinal vein namespace: uberon def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] synonym: "DLV" EXACT [TAO:0005031] xref: ZFA:0005031 is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:0008998 ! vasculature of brain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005052 name: anterior mesencephalic central artery namespace: uberon def: "Arteries that irrigate rostral regions of the midbrain. They extend between the Basial communicating artery to the anterior cerebral vein. Isogai et al. 2001." [ZFIN:curator] synonym: "AMCtA" EXACT [TAO:0005052] synonym: "rostral mesencephalic central artery" EXACT [TAO:0005052] xref: ZFA:0005052 is_a: UBERON:2005020 ! central artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005078 name: middle mesencephalic central artery namespace: uberon def: "Project rostrally and dorsally from the AMCtA to to irrigate the midportion of the midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "MMCtA" EXACT [TAO:0005078] xref: ZFA:0005078 is_a: UBERON:2005020 ! central artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005079 name: posterior mesencephalic central artery namespace: uberon def: "Project dorsally from BCA to irrigate the caudal part of midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "caudal mesencephalic central artery" EXACT [TAO:0005079] synonym: "PMCtA" EXACT [TAO:0005079] xref: ZFA:0005079 is_a: UBERON:2005020 ! central artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005144 name: ampullary nerve namespace: uberon def: "A branch of the 8th cranial nerve that innervates the cristae ampullaris." [ZFIN:curator] xref: ZFA:0005144 is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005219 name: choroid plexus vascular circuit namespace: uberon def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11] synonym: "choroid vascular circuit" RELATED [TAO:0005219] synonym: "CVC" EXACT [TAO:0005219] xref: ZFA:0005219 is_a: UBERON:0008998 ! vasculature of brain relationship: part_of UBERON:0001886 ! choroid plexus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005248 name: trans-choroid plexus branch namespace: uberon synonym: "TCB" EXACT [TAO:0005248] xref: ZFA:0005248 is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:2005219 ! choroid plexus vascular circuit property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005338 name: posterior recess namespace: uberon def: "Posterior protrusion of the third ventricle." [ZFIN:curator] synonym: "posterior recess of diencephalic ventricle" EXACT [TAO:0005338] xref: ZFA:0005338 relationship: part_of UBERON:0002286 ! third ventricle property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005339 name: nucleus of the lateral recess namespace: uberon xref: ZFA:0005339 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005340 name: nucleus of the posterior recess namespace: uberon xref: ZFA:0005340 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005341 name: medial longitudinal catecholaminergic tract namespace: uberon synonym: "mlct" EXACT [TAO:0005341] xref: ZFA:0005341 is_a: UBERON:0002316 ! white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005343 name: endohypothalamic tract namespace: uberon def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus." [ZFIN:ZDB-PUB-091221-28] xref: ZFA:0005343 is_a: UBERON:0002316 ! white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2005344 name: preopticohypothalamic tract namespace: uberon xref: ZFA:0005344 is_a: UBERON:0002316 ! white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007001 name: dorso-rostral cluster namespace: uberon def: "Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). Ross et al., 1992." [ZFIN:curator] synonym: "dorsorostral cluster" EXACT [TAO:0007001] synonym: "drc" EXACT [TAO:0007001] xref: ZFA:0007001 relationship: part_of UBERON:0001893 ! telencephalon property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007002 name: ventro-rostral cluster namespace: uberon def: "Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] synonym: "ventrorostral cluster" EXACT [TAO:0007002] synonym: "vrc" EXACT [TAO:0007002] xref: ZFA:0007002 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001894 ! diencephalon property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007003 name: ventro-caudal cluster namespace: uberon def: "Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] synonym: "vcc" EXACT [TAO:0007003] synonym: "ventrocaudal cluster" EXACT [TAO:0007003] xref: ZFA:0007003 is_a: UBERON:0001891 ! midbrain property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007004 name: epiphysial cluster namespace: uberon def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. Ross et al., 1992." [ZFIN:curator] synonym: "ec" EXACT [TAO:0007004] xref: ZFA:0007004 relationship: part_of UBERON:0001905 ! pineal body property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2007012 name: lateral forebrain bundle namespace: uberon xref: ZFA:0007012 is_a: UBERON:0002316 ! white matter property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:3000393 name: pars amphibiorum namespace: uberon relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000395 name: pars basilaris namespace: uberon relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010105 name: anterodorsal lateral line nerve (ADLLN) namespace: uberon def: "Sensory nerve of the anterior lateral line component. It develops from the preotic anterodorsal placode. ADLLN branches into two rami innervating orbital lines of neuromasts." [AAO:SIQ] is_a: UBERON:0008906 ! lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010109 name: anteroventral lateral line nerve (AVLLN) namespace: uberon def: "Sensory nerve of the anterior lateral line component. It develops from preotic anteroventral placode. AVLLN innervates lower jaw lines of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010115 name: posterior lateral line nerve (PLLN) namespace: uberon def: "Sensory nerve of the posterior lateral line component. It develops from de postotic posterior placode. PLLN innervates the trunk lines of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010126 name: middle lateral line nerve (MLLN) namespace: uberon def: "Sensory nerve of the posterior lateral line component. It develops from the postotic middle placode. MLLN innervates neuromasts located over the otic capsule and the suprabranchial line of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010541 name: median pars intermedia namespace: uberon def: "Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores." [AAO:BJB] relationship: part_of UBERON:0002196 ! adenohypophysis property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010652 name: ramus nasalis lateralis namespace: uberon def: "Ramule of ophthalmic nerve (see also ramus nasalis medialis). The first branch of ophthalmic nerve gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000348 ! ophthalmic nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010653 name: ramus nasalis medialis namespace: uberon def: "Ramule of ophthalmic nerve (see also ramus nasalis lateralis). First branch gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] relationship: part_of UBERON:0000348 ! ophthalmic nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010661 name: ramus nasalis internus namespace: uberon def: "Distal part of the opthalmicus profundus gives rise to 2 ramules: palatinus and cutaneous." [AAO:EJS] is_a: UBERON:0000348 ! ophthalmic nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010665 name: ramule palatinus namespace: uberon def: "Ramules that descends towards the buccal roof and give rise to several short branches that anastomose with palatine ramus of the facial nerve." [AAO:EJS] is_a: UBERON:3010661 ! ramus nasalis internus property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010668 name: ramules cutaneous namespace: uberon alt_id: UBERON:3010672 def: "Many branches of the maxillary ramus that terminate in the integument of the maxillary region." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000377 ! maxillary nerve relationship: part_of UBERON:3010661 ! ramus nasalis internus property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010669 name: trunk maxillary-mandibularis namespace: uberon def: "Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001645 ! trigeminal nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010671 name: ramule palatonasalis namespace: uberon def: "Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve." [AAO:EJS] relationship: part_of UBERON:0000377 ! maxillary nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010693 name: ramus posterior profundus of V3 namespace: uberon def: "In the adult anuran, this innervates the muscles levator mandibulare internus and longus." [AAO:EJS] relationship: part_of UBERON:0000375 ! mandibular nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010720 name: ramus hyomandibularis namespace: uberon def: "The posttrematic branch of the facial nerve, both motor and sensory in function." [AAO:CAM] relationship: part_of UBERON:0001647 ! facial nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010722 name: ramus palatinus namespace: uberon def: "Sensory branch of facial nerve from palatal region." [AAO:CAM] is_a: UBERON:0001647 ! facial nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010726 name: ramus muscularis of glossopharyngeus nerve namespace: uberon def: "Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I." [AAO:EJS] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0001649 ! glossopharyngeal nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010735 name: ramus anterior of CN VIII namespace: uberon def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS] relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010736 name: ramus posterior of CN VIII namespace: uberon def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS] relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010740 name: ramus auricularis of the vagus nerve namespace: uberon def: "An afferent branch of the vagus nerve." [AAO:EJS] is_a: UBERON:0001759 ! vagus nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010750 name: descending branch of the vagus nerve namespace: uberon def: "Major branch of the vagus supplying parasympathetic innervation to viscera." [AAO:EJS] is_a: UBERON:0004293 ! parasympathetic nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000011 ! parasympathetic nervous system relationship: part_of UBERON:0001759 ! vagus nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010751 name: ramus muscularis of vagus nerve namespace: uberon def: "Motor nervous branch of the vagus innervating m. subarcualis rectus I." [AAO:CAM] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:3010754 ! ramus recurrens property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010754 name: ramus recurrens namespace: uberon def: "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx." [AAO:EJS] relationship: part_of UBERON:0001759 ! vagus nerve property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010757 name: ramus superficial ophthalmic namespace: uberon def: "Dorsal branch of ADLLN that innervates supraorbital line of neuromasts." [AAO:EJS] is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010759 name: ramus buccal namespace: uberon def: "Ventral ramus of the ADLLN that innervates the infraorbital line of neuromasts." [AAO:EJS] is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010764 name: laryngeus ventralis namespace: uberon def: "A branch of the vagus nerve innervating heart, stomach, and lung muscle." [AAO:CAM] is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:3010754 ! ramus recurrens property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010765 name: ramus mandibularis externus namespace: uberon def: "Runs together with motor fibers of the hyomandibular trunk of VII. The mandibularis externus of AVLLN branches into three ramules ." [AAO:SIQ] is_a: UBERON:3010109 ! anteroventral lateral line nerve (AVLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010770 name: dorsal sympathetic chain namespace: uberon is_a: UBERON:0000407 ! sympathetic trunk property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010771 name: ventral sympathetic chain namespace: uberon is_a: UBERON:0000407 ! sympathetic trunk property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010778 name: jugal ramule namespace: uberon def: "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus." [AAO:SIQ] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010794 name: oral ramule namespace: uberon def: "Medial branch of the ramus mandibularis externus. This ramule innervates the oral and angular lines of neuromasts." [AAO:EJS] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010795 name: preopercular ramule namespace: uberon def: "Ventral branch of the ramus mandibularis externus. This ramule have a superior and an inferior division, both innervating the preopercular line of neuromasts." [AAO:EJS] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010796 name: ramus supraotic namespace: uberon def: "Small ramus of the MLLN that innervates neuromasts located at the posterior margin of the otic capsule." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010798 name: ramulus suprabranchialis anterior namespace: uberon def: "Ramulus that innervates the suprabranchial line of neuromasts." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010799 name: ramulus suprabranchialis posterior namespace: uberon def: "Ramulus innervating the suprabranchial line of neuromasts." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010801 name: ramus lateral namespace: uberon def: "Ventral division of the trunk of the PLLN, this prominent ramus extends over the lateral trunk and caudal musculature innervating the lateral line of neuromasts." [AAO:SIQ] is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010804 name: ramus ventral namespace: uberon def: "This ramus leaves the postotic ganglionic complex together with the third branchial ramus of X. This ramule innervates the ventral line of neuromasts." [AAO:SIQ] is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:6001060 name: insect embryonic brain namespace: uberon def: "Brain of the embryo." [FBC:SPR] xref: FBbt:00001060 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain [Term] id: UBERON:6001911 name: insect embryonic/larval nervous system namespace: uberon def: "Nervous system of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0075072, FlyBase:FBrf0105282] synonym: "larval nervous system" EXACT [] xref: FBbt:00001911 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system [Term] id: UBERON:6001919 name: insect embryonic/larval central nervous system namespace: uberon def: "Central nervous system of the embryo/larva." [FBC:SPR] synonym: "larval central nervous system" EXACT [] xref: FBbt:00001919 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6001911 ! insect embryonic/larval nervous system [Term] id: UBERON:6001920 name: insect embryonic/larval brain namespace: uberon def: "Brain of the embryo/larva." [FBC:SPR] synonym: "larval brain" NARROW [] synonym: "larval supraesophageal ganglion" NARROW [] xref: FBbt:00001920 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain is_a: UBERON:0003339 ! ganglion of central nervous system relationship: part_of UBERON:6001919 ! insect embryonic/larval central nervous system [Term] id: UBERON:6001925 name: insect embryonic/larval protocerebrum namespace: uberon def: "Protocerebrum of the embryo/larva." [FBC:SPR] synonym: "larval protocerebrum" RELATED [] xref: FBbt:00001925 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6001920 ! insect embryonic/larval brain [Term] id: UBERON:6003559 name: insect adult nervous system namespace: uberon def: "Nervous system of the adult insect." [ISBN:978-087969828-7] xref: FBbt:00003559 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system [Term] id: UBERON:6003623 name: insect adult central nervous system namespace: uberon def: "Central nervous system of the adult." [FBC:SPR] xref: FBbt:00003623 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6003559 ! insect adult nervous system [Term] id: UBERON:6003624 name: insect adult brain namespace: uberon def: "Brain of the adult." [FBC:SPR] xref: FBbt:00003624 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain relationship: part_of UBERON:6003623 ! insect adult central nervous system [Term] id: UBERON:6003626 name: insect supraesophageal ganglion namespace: uberon def: "The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "SPG" RELATED [] xref: FBbt:00003626 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0003339 ! ganglion of central nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:6003627 name: insect protocerebrum namespace: uberon def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "protocerebral neuromere" EXACT [FlyBase:FBrf0092819] xref: FBbt:00003627 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:6003626 ! insect supraesophageal ganglion [Term] id: UBERON:6003632 name: insect adult central complex namespace: uberon def: "A midline crossing complex of 4 synaptic neuropil domains of the adult brain: the ellipsoid body, the fan-shaped body, the paired noduli, and the protocerebral bridge. It is closely associated with another paired synaptic neuropil domain, the lateral complex. It lies in the middle of the brain between the pedunculi of the mushroom bodies and is bounded ventrally by the esophagus, dorsally by the pars intercerebralis and laterally by the antenno-glomerular tracts." [FlyBase:FBrf0049409, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "adult central body complex" EXACT [] synonym: "central body" RELATED [] synonym: "central body complex" RELATED [] synonym: "CX" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] xref: FBbt:00003632 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6041000 ! insect synaptic neuropil block relationship: part_of UBERON:6007145 ! insect adult protocerebrum relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion [Term] id: UBERON:6005096 name: insect stomatogastric nervous system namespace: uberon def: "A group of small, interconnected ganglia situated posterior to and between the two brain hemispheres and associated with the pharynx, esophagus and aorta." [FlyBase:FBrf0089570, PMID:12966498] synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704] synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704] xref: FBbt:00005096 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:6005177 name: insect chaeta namespace: uberon def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, FlyBase:FBrf0166419] synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704] xref: FBbt:00005177 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007232 ! insect eo-type sensillum [Term] id: UBERON:6005805 name: insect Bolwig organ namespace: uberon def: "Visual organ of the larva. It consists of a dense cluster of 12 ciliated photoreceptor neurons." [FlyBase:FBrf0089570] synonym: "Bolwig's organ" EXACT [] synonym: "dorsocaudal pharyngeal sense organ" RELATED [] synonym: "embryonic Bolwig's organ" EXACT [] synonym: "embryonic visual system" EXACT [] synonym: "larval Bolwig's organ" EXACT [] xref: FBbt:00005805 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007233 ! insect internal sensillum is_a: UBERON:6007242 ! insect embryonic/larval head sensillum [Term] id: UBERON:6007070 name: insect centro-posterior medial synaptic neuropil domain namespace: uberon def: "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-lateral compartment by the peduncle, and from the centro-posterior intermediate compartment by the antenno-cerebral tract to which it is connected via a branch." [FlyBase:FBrf0155900] synonym: "centro-posterior medial neuropil" EXACT [] synonym: "centro-posterior medial synaptic neuropil domain" EXACT [] synonym: "CPM" RELATED [] synonym: "larval central complex" EXACT [] xref: FBbt:00007070 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6040007 ! insect synaptic neuropil domain relationship: part_of UBERON:6001925 ! insect embryonic/larval protocerebrum [Term] id: UBERON:6007145 name: insect adult protocerebrum namespace: uberon def: "Protocerebrum of the adult brain." [FBC:SPR] xref: FBbt:00007145 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion [Term] id: UBERON:6007231 name: insect external sensillum namespace: uberon def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS] xref: FBbt:00007231 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum [Term] id: UBERON:6007232 name: insect eo-type sensillum namespace: uberon def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570] synonym: "eso" RELATED [] xref: FBbt:00007232 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007231 ! insect external sensillum [Term] id: UBERON:6007233 name: insect internal sensillum namespace: uberon def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] xref: FBbt:00007233 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum [Term] id: UBERON:6007240 name: insect embryonic/larval sensillum namespace: uberon def: "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] synonym: "larval sensillum" EXACT [] xref: FBbt:00007240 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum [Term] id: UBERON:6007242 name: insect embryonic/larval head sensillum namespace: uberon def: "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sensillum" NARROW [] xref: FBbt:00007242 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000963 ! head sensillum is_a: UBERON:6007240 ! insect embryonic/larval sensillum [Term] id: UBERON:6040005 name: insect synaptic neuropil namespace: uberon def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] xref: FBbt:00040005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 ! material anatomical entity relationship: part_of UBERON:0002606 ! neuropil [Term] id: UBERON:6040007 name: insect synaptic neuropil domain namespace: uberon def: "Region of synaptic neuropil whose boundaries are largely discontinuities in the density of presynaptic terminals: high density in the synaptic neuropil domain, lower or zero density outside this region. These boundaries often correspond to a boundary with glial sheath, tract neuropil or cortex." [FlyBase:FBrf0155900, FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "fibrous neuropil" RELATED [] synonym: "synaptic neuropil" RELATED [] xref: FBbt:00040007 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:6040005 ! insect synaptic neuropil [Term] id: UBERON:6041000 name: insect synaptic neuropil block namespace: uberon def: "A closely associated group of synaptic neuropil domains." [FBC:DOS, FBC:KI] synonym: "level 1 neuropil" EXACT [FlyBase:FBrf0224194] xref: FBbt:00041000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} relationship: part_of UBERON:6040005 ! insect synaptic neuropil [Term] id: UBERON:6110636 name: insect adult cerebral ganglion namespace: uberon def: "The pre-oral neuropils of the adult brain located above, around and partially below the esophagus, including the optic lobes. It excludes the gnathal ganglion. Developmentally, it comprises three fused neuromeres: protocerebrum, deutocerebrum, and tritocerebrum." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "brain" RELATED [] synonym: "cerebrum" RELATED [] synonym: "CRG" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] synonym: "SPG" RELATED [] synonym: "supraesophageal ganglion" RELATED [] xref: FBbt:00110636 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003626 ! insect supraesophageal ganglion relationship: part_of UBERON:6003624 ! insect adult brain [Term] id: UBERON:8000004 name: central retina namespace: uberon def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000966 ! retina property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000005 name: Henle's fiber layer namespace: uberon def: "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL)." [PMID:21071737] synonym: "Henle fiber layer" EXACT [] synonym: "HFL" EXACT [] synonym: "nerve fiber layer of Henle" EXACT [] is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8410006 name: submucous nerve plexus of anorectum namespace: uberon def: "Submucous nerve plexus that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] synonym: "anorectum submucous nerve plexus" EXACT [] is_a: UBERON:0005304 ! submucous nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410007 name: myenteric nerve plexus of anorectum namespace: uberon def: "Myenteric nerve plexus that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] synonym: "anorectum myenteric nerve plexus" EXACT [] is_a: UBERON:0002439 ! myenteric nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410011 name: myenteric nerve plexus of appendix namespace: uberon def: "Myenteric nerve plexus that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "myenteric nerve plexus of appendix vermiformis" EXACT [] synonym: "myenteric nerve plexus of vermiform appendix" EXACT [] is_a: UBERON:0002439 ! myenteric nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410012 name: submucous nerve plexus of appendix namespace: uberon def: "Submucous nerve plexus that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "submucous nerve plexus of appendix vermiformis" EXACT [] synonym: "submucous nerve plexus of vermiform appendix" EXACT [] is_a: UBERON:0005304 ! submucous nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410049 name: serosal nerve fiber of appendix namespace: uberon def: "A nerve fiber that is located in the serosa of vermiform appendix." [http://orcid.org/0000-0003-3440-1876] synonym: "nerve fiber of serosa of appendix" EXACT [] synonym: "nerve fibre of serosa of appendix" EXACT [] synonym: "serosal nerve fiber of appendix vermiformis" EXACT [] synonym: "serosal nerve fiber of vermiform appendix" EXACT [] synonym: "serosal nerve fibre of appendix" EXACT [] synonym: "serosal nerve fibre of appendix vermiformis" EXACT [] synonym: "serosal nerve fibre of vermiform appendix" EXACT [] is_a: UBERON:0006134 ! nerve fiber property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 [Term] id: UBERON:8410058 name: myenteric nerve plexus of colon namespace: uberon def: "Myenteric nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0002439 ! myenteric nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:8410059 name: submucous nerve plexus of colon namespace: uberon def: "Submucous nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0005304 ! submucous nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:8410062 name: parasympathetic cholinergic nerve namespace: uberon def: "A parasympathetic nerve that releases acetylcholine." [PMID:24676230] subset: human_reference_atlas is_a: UBERON:0004293 ! parasympathetic nerve property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2104" xsd:string [Term] id: UBERON:8410063 name: myenteric nerve plexus of small intestine namespace: uberon def: "Myenteric nerve plexus that is part of the small intestine." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0002439 ! myenteric nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:8410064 name: submucous nerve plexus of small intestine namespace: uberon def: "Submucous nerve plexus that is located in the small intestine." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas is_a: UBERON:0005304 ! submucous nerve plexus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2825-0621 property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:8440000 name: cortical layer II/III namespace: uberon def: "A laminar subdivision of the neocortex that is comprised of a part of layer II and a part of layer III." [PMID:34616063] comment: In rodents, layer II/III refers to a mereological sum of layers II and III as there is no clear architectonic boundary between them. {xref="PMID:29311847"} synonym: "cerebral cortex layer 2/3" EXACT [] synonym: "neocortex layer 2/3" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex [Term] id: UBERON:8440001 name: cortical layer IV/V namespace: uberon def: "A laminar subdivision of the neocortex that is comprised of a part of layer IV and a part of layer V." [PMID:34616063] synonym: "cerebral cortex layer 4/5" EXACT [] synonym: "neocortex layer 4/5" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex [Term] id: UBERON:8440002 name: cortical layer V/VI namespace: uberon def: "A laminar subdivision of the neocortex that is comprised of a part of layer V and a part of layer VI." [PMID:34616063] synonym: "cerebral cortex layer 5/6" EXACT [] synonym: "neocortex layer 5/6" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex [Term] id: UBERON:8440003 name: cortical layer VIb namespace: uberon def: "The deepest layer of the neocortex. While layer 6b is considered part of layer 6, it is distinct morphologically, genetically, and developmentally from the rest of layer 6. Neurons in L6b project to cortical targets and higher-order thalamus and develop from a precursor population that arises from the subplate." [PMID:32160552] synonym: "cerebral cortex layer 6b" EXACT [] synonym: "neocortex layer 6b" EXACT [] is_a: UBERON:0002301 ! layer of neocortex relationship: part_of UBERON:0005395 ! cortical layer VI [Term] id: UBERON:8440004 name: laminar subdivision of the cortex namespace: uberon def: "One or a subset of adjacent layers of the neocortex." [ISBN-10:0-87893-742-0] is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:8440005 name: rostral periventricular region of the third ventricle namespace: uberon def: "A functional anatomical construct containing the key estrogen-regulated inputs to gonadotropin-releasing hormone expressing (GnRH) neurons necessary for estrogen positive feedback. The rostral periventricular region of the third ventricle contains a population of neurons, scattered through the nuclei of the anteroventral periventricular (AVPV), periventricular preoptic (PVpo), and median preoptic (MEPO), that project directly to GnRH neurons and express ER-alpha." [PMID:17604108] comment: In rats and mice, the anteroventral periventricular nucleus plus the periventricular nucleus make up the rostral periventricular region of the third ventricle (RP3V). Overlaps is used (instead of has_part that this comment suggests should be used) as PMID:17604108 suggest that the region refers to cells that are scattered in the area. {xref="WikipediaVersioned:Anteroventral_periventricular_nucleus&oldid=966137187"} synonym: "RP3V" EXACT [PMID:17604108] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0006569 ! diencephalic nucleus [Term] id: UBERON:8440007 name: periventricular hypothalamic nucleus, anterior part namespace: uberon def: "The anterior part of the periventricular hypothalamic nucleus." [MBA:30] comment: This seperation is based on the Allen mouse brain atlas. synonym: "PVa" EXACT [MBA:30] xref: MBA:30 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus property_value: RO:0002171 UBERON:8440008 [Term] id: UBERON:8440008 name: periventricular hypothalamic nucleus, intermediate part namespace: uberon def: "The intermediate part of the periventricular hypothalamic nucleus." [MBA:118] comment: This seperation is based on the Allen mouse brain atlas. synonym: "PVi" EXACT [MBA:118] xref: MBA:118 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus property_value: RO:0002171 UBERON:8440007 [Term] id: UBERON:8440010 name: Brodmann (1909) area 17 namespace: uberon def: "A subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]." [BrainInfo:2102] comment: This term was split out from primary visual cortex as many of the axioms and annotations were specific to primates or humans. synonym: "area 17 of Brodmann" RELATED [Wikipedia:Visual_cortex] synonym: "area 17 of Brodmann-1909" EXACT [BIRNLEX:1748] synonym: "area striata" RELATED [] synonym: "B09-17" BROAD OMO:0003000 [BIRNLEX:1748, NIFSTD:SumsDB_abbrevSource] synonym: "b09-17" EXACT [BIRNLEX:1748] synonym: "BA17" EXACT OMO:0003000 [] synonym: "BA17" RELATED OMO:0003000 [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" EXACT [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" RELATED [Wikipedia:Visual_cortex] synonym: "Brodmann area 17, striate" EXACT [BIRNLEX:1748] synonym: "calcarine cortex" RELATED [BrainInfo:2102] synonym: "human primary visual cortex" RELATED [] synonym: "nerve X" RELATED [NeuroNames:702] synonym: "occipital visual neocortex" RELATED [GEO:GSM336648] synonym: "primary visual area" RELATED [BAMS:VISp] synonym: "primate striate cortex" EXACT [FMA:236871, Wikipedia:Visual_cortex] synonym: "striate area" RELATED [BAMS:17] synonym: "V1" RELATED [Wikipedia:Visual_cortex] synonym: "visual area one" RELATED [Wikipedia:Visual_cortex] synonym: "visual area V1" RELATED [BTO:0004703] synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: BIRNLEX:1748 xref: BM:Tel-Cx-V1 xref: PBA:10026 xref: SCTID:384772005 xref: UMLS:C0038446 {source="ncithesaurus:Primary_Visual_Cortex"} xref: UMLS:C1272535 {source="BIRNLEX:1748"} is_a: UBERON:0002436 ! primary visual cortex is_a: UBERON:0013529 {source="FMA"} ! Brodmann area is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 property_value: http://xmlns.com/foaf/0.1/depiction "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png" xsd:anyURI [Term] id: UBERON:8440011 name: cortical visual area namespace: uberon def: "The part of the cortex that is responsible for processing visual information." [https://orcid.org/0000-0001-7258-9596] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440012 name: cerebral nuclei namespace: uberon def: "One of three components of the cerebrum that is a composite structure of the endbrain defined on the basis of origin from the ventricular ridge of the embryonic Encephalon. It consists of the extended striatum and the extended pallidum." [neuronames:2677] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to collection of basal ganglia) synonym: "CNU" EXACT [MBA:623] xref: BTO:0006534 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10331 xref: HBA:4275 xref: MBA:623 xref: PBA:128012596 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001893 ! telencephalon property_value: RO:0002171 UBERON:0000956 [Term] id: UBERON:8440013 name: fasciola cinerea namespace: uberon def: "A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus. The FC exhibits clear anatomical borders with the distalmost region of the CA1." [https://medical-dictionary.thefreedictionary.com/fasciola+cinerea, PMID:34999186] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to fasciolar gyrus) synonym: "FC" EXACT [MBA:982] xref: DMBA:112892265 xref: MBA:982 relationship: part_of UBERON:0002421 ! hippocampal formation property_value: RO:0002171 UBERON:0003881 [Term] id: UBERON:8440014 name: ventrolateral preoptic nucleus namespace: uberon def: "A small cluster of neurons situated in the anterior hypothalamus, sitting just above and to the side of the optic chiasm in the brain of humans and other animals." [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to pars postrema of ventral lateral nucleus) synonym: "intermediate nucleus of the preoptic area (IPA)" EXACT [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] synonym: "VLPO" EXACT [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] xref: DMBA:15612 xref: MBA:689 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:8440015 name: noradrenergic cell groups namespace: uberon def: "Collections of neurons in the central nervous system that have been demonstrated by histochemical fluorescence to contain the neurotransmitter norepinephrine (noradrenalin)." [WikipediaVersioned:Noradrenergic_cell_groups&oldid=965992184] is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:8440016 name: noradrenergic cell group A1 namespace: uberon def: "A group of cells in the vicinity of the lateral reticular nucleus of the medullary reticular formation that label for norepinephrine in primates." [WikipediaVersioned:Noradrenergic_cell_group_A1&oldid=903443213] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002559 ! medullary reticular formation [Term] id: UBERON:8440017 name: noradrenergiccell group A2 namespace: uberon def: "A group of cells in the vicinity of the dorsal motor nucleus of the vagus nerve in the medulla that label for norepinephrine in primates and rodents." [WikipediaVersioned:Noradrenergic_cell_group_A2&oldid=870891895] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:8440018 name: noradrenergic cell group A4 namespace: uberon def: "A group of cells exhibiting noradrenergic fluorescence that, in the rat, are located in the Tegmen ventriculi quarti (roof of the fourth ventricle) ventral to the cerebellar nuclei, and in the macaque, are found at the edge of the lateral recess of the fourth ventricle caudally, extending to beneath the floor of the ventricle where they merge with the noradrenergic group A6, the locus ceruleus." [WikipediaVersioned:Noradrenergic_cell_group_A4&oldid=773500348] xref: DMBA:16937 is_a: UBERON:8440015 ! noradrenergic cell groups [Term] id: UBERON:8440019 name: noradrenergic cell group A5 namespace: uberon def: "A group of cells in the vicinity of the superior olivary complex in the pontine tegmentum that label for norepinephine in primates, rodents, and other mammals." [WikipediaVersioned:Noradrenergic_cell_group_A5&oldid=1081186383] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:8440021 name: noradrenergic cell group A7 namespace: uberon def: "A group of cells fluorescent for norepinephrine that is located in the pontine reticular formation ventral to the superior cerebellar peduncle of the pons in rodents and in primates." [WikipediaVersioned:Noradrenergic_cell_group_A7&oldid=870891935] xref: DMBA:17052 is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002573 ! pontine reticular formation [Term] id: UBERON:8440022 name: noradrenergic cell group A6sc namespace: uberon def: "A group of cells fluorescent for norepinephrine that are scattered in the nucleus subceruleus of the macaque." [WikipediaVersioned:Noradrenergic_cell_group_A6sc&oldid=773500411] is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002587 ! nucleus subceruleus [Term] id: UBERON:8440023 name: noradrenergic cell group Acg namespace: uberon def: "A group of cells fluorescent for norepinephrine that are located in the central gray of the midbrain at the level of the trochlear nucleus in the squirrel monkey (Saimiri) and to a lesser degree in the macaque." [WikipediaVersioned:Noradrenergic_cell_group_Acg&oldid=981960786] is_a: UBERON:8440015 ! noradrenergic cell groups [Term] id: UBERON:8440024 name: visceral area namespace: uberon def: "A cortical area between the agranular insular cortex and the supplemental somatosensory area in rats and mice. The VISC is the architectonically equivalent structure granular insula in humans." [neuronames:1192&questID=2709] synonym: "VISC" EXACT [MBA:677] xref: MBA:677 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440025 name: parapyramidal nucleus namespace: uberon def: "A small group of cells located lateral to the pyramid of the medulla in the rat and the mouse that functionally it belongs to the reticular formation of the subcortical motor system." [neuronames:1771] synonym: "PPY" EXACT [MBA:1069] xref: MBA:1069 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:8440026 name: parapyramidal nucleus, deep part namespace: uberon def: "The part of the parapyramidal nucleus that is closely adjacent to the inner surface of the pyramidal tract." [neuronames:3451&questID=1771] synonym: "PPYd" EXACT [MBA:185] xref: MBA:185 is_a: UBERON:8440025 ! parapyramidal nucleus [Term] id: UBERON:8440027 name: parapyramidal nucleus, superficial part namespace: uberon def: "The part of the parapyramidal nucleus that is located on the ventral surface of the medulla lateral to the pyramidal tract." [neuronames:3452&questID=1771] synonym: "PPYs" EXACT [MBA:193] xref: MBA:193 is_a: UBERON:8440025 ! parapyramidal nucleus [Term] id: UBERON:8440028 name: Perihypoglossal nuclei namespace: uberon def: "A group of neurons in the floor of the fourth ventricle, in close proximity to the nucleus of the hypoglossal nerve in the gray substance of the medulla oblongata, all of which contain cells with characteristics suggestive of reticular connections." [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "nuclei perihypoglossales" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal nuclear complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "PHY" EXACT OMO:0003000 [MBA:154] synonym: "satellite nuclei" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] xref: MBA:154 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:8440029 name: rubroreticular tract namespace: uberon def: "Nerve fibers that originate in the magnocellular red nucleus, cross to the other side of the midbrain, and descend in the lateral part of the brainstem tegmentum in the midbrain, and travel through the lateral funiculus of the spinal cord, coursing adjacent to the lateral corticospinal tract." [WikipediaVersioned:Rubrospinal_tract&oldid=1002226835] xref: MBA:221 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:8440030 name: striatum-like amygdalar nuclei namespace: uberon def: "A part of the striatum which is primarilly composed of amygdalar areas. The sAMY is composed of the anterior amygdalar area, central amygdalar nucleus, intercalated amygdalar nucleus, medial amygdalar nucleus, and the bed nucleus of the accessory olfactory tract." [MBA:278] synonym: "sAMY" EXACT [MBA:278] xref: MBA:278 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:8440031 name: medial corticohypothalmic tract namespace: uberon def: "The main route taken by fibers from the ventral subiculum to the hypothalamus, where they innervate the medial preoptic area, “shell” of the ventromedial nucleus, dorsomedial nucleus, ventral premammillary nucleus, and cell-poor zone around the medial mammillary nucleus." [PMID:1430328] synonym: "mct" EXACT [MBA:428] xref: MBA:428 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:8440032 name: prelimbic area namespace: uberon def: "A region in the medial prefrontal cortex that is dorsal to the infralimbic area important in expression of conditioned reward and fear behaviour." [PMID:30850668] synonym: "PL" EXACT [MBA:972] synonym: "prelimbic cortex" EXACT [PMID:30639183] synonym: "PrL" EXACT [PMID:30639183] xref: MBA:972 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000451 ! prefrontal cortex property_value: RO:0002171 UBERON:8440033 property_value: RO:0002175 NCBITaxon:9989 [Term] id: UBERON:8440033 name: infralimbic area namespace: uberon def: "A region in the medial prefrontal cortex that is ventral to the prelimbic area important in supression of conditioned reward and fear behaviour." [PMID:30850668] synonym: "IL (brain)" EXACT [PMID:30639183] synonym: "ILA" EXACT [MBA:44] synonym: "infralimbic cortex" EXACT [PMID:30639183] xref: MBA:44 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000451 ! prefrontal cortex property_value: RO:0002171 UBERON:8440032 property_value: RO:0002175 NCBITaxon:9989 [Term] id: UBERON:8440034 name: bulbocerebellar tract namespace: uberon def: "A subdivision of inferior cerebellar peduncle that connects the medulla to the cerebellum." [MBA:490] synonym: "bct" EXACT [MBA:490] xref: MBA:490 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:8440035 name: sublaterodorsal nucleus namespace: uberon def: "A region in the dorsal pons that plays a central role in inducing motor suppression during REM sleep." [PMID:31679942] synonym: "SLD" EXACT [MBA:358] synonym: "sublaterodorsal tegmental nucleus" EXACT [] xref: MBA:358 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:8440036 name: supratrigeminal nucleus namespace: uberon def: "A premotoneuron pool in the trigeminal reflex arc that is a key structure of jaw movement control." [PMID:26987956] synonym: "SUT" EXACT [MBA:534] synonym: "Vsup" EXACT [PMID:26987956] xref: DMBA:16977 xref: MBA:534 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:8440037 name: accessory facial motor nucleus namespace: uberon def: "A small cluster of neurons dorsal to the facial motor nucleus in the pontine tegmentum." [WikipediaVersioned:Accessory_facial_motor_nucleus&oldid=1046234765] synonym: "ACVII" EXACT [MBA:576] xref: MBA:576 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:8440038 name: efferent vestibular nucleus namespace: uberon def: "A small region of neurons in the brainstem, dorsolateral to the genu of facial nerve, that have efferents to the vestibular periphery." [PMID:26422206] synonym: "EV" EXACT [MBA:640] xref: MBA:640 is_a: UBERON:0006331 ! brainstem nucleus relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:8440039 name: piriform-amygdalar area namespace: uberon def: "The cortical region between the cortical amygdalar area and the piriform area." [MBA:788] comment: In the human and macaque, the piriform-amygdalar area is not distinguished from the postpiriform transition area. {xref="neuronames:1776"} synonym: "PAA (brain)" EXACT [MBA:788] xref: MBA:788 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440040 name: dorsal peduncular area namespace: uberon def: "A cytoarchitectonic area on the medial surface of the cerebral hemisphere rostral to the septum, ventral to the infralimbic area and dorsal to the tenia tecta in the mouse and rat." [neuronames:1776] comment: Some authors regard it not as a separate structure but as the ventral part of the infralimbic area. {xref="neuronames:1776"} synonym: "DP" EXACT [MBA:814] xref: MBA:814 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:8440041 name: tuberal nucleus (sensu Rodentia) namespace: uberon def: "A hypothalamic region in rodents that is homologous to the lateral tuberal nucleus in humans and higher primates and is involved in energy homeostasis." [PMID:29976812, PMID:29976824] comment: While lateral tuberal nucleus is often used interchangeably with tuberal nucleus in rodents, lateral tuberal nucleus is specific to humans and higher primates. In some cases, lateral tuberal nucleus is thought to be part of the tuberal nucleus in rodents, and could possibly be homologous to human tuberal region instead. {xref="PMID:29976824", xref="neuronames:1890", xref="PMID:1362279"} synonym: "lateral tuberal nucleus (sensu Rodentia)" BROAD [neuronames:1890] synonym: "lateral tuberal nucleus (sensu Rodentia)" EXACT [PMID:29976812] xref: DMBA:16271 xref: MBA:614 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0001898 ! hypothalamus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 property_value: IAO:0000232 "Lateral tuberal nucleus is listed as both an exact synonym and related synonym as the term has been used in both ways. See https://github.com/obophenotype/uberon/issues/2439 for more details. No homology links has been made as this is unclear from the literature." xsd:string [Term] id: UBERON:8440042 name: nucleus lateralis tuberis system (sensu Teleostei) namespace: uberon def: "A prominent nucleus located in the ventral tuberal area of Teleostei that is anatomically homologous to the hypothalamic arcuate (infundibular)-median eminence (ME) system of tetrpods." [DOI:10.1016/0016-6480(71)90165-1, PMID:25205931] comment: This term is used specifically for fish (or Teleostei in general) as lateral tuberal nucleus (UBERON:0000435) refers to a structure that is specific to humans and higher primates. See https://github.com/obophenotype/uberon/issues/2439 for more details. {xref="PMID:1362279"} synonym: "NLT system (sensu Teleostei)" EXACT [DOI:10.1016/0016-6480(71)90165-1] is_a: UBERON:0001937 ! lateral hypothalamic nucleus property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440043 name: superior paraolivary nucleus namespace: uberon def: "A structure embedded in the superior olivary complex that is driven by input pathways from the octopus cells in the cochlear nucleus and the neurons of the medial nucleus of the trapezoid body." [DOI:10.1093/oxfordhb/9780190849061.013.11] synonym: "SPON" EXACT [DOI:10.1093/oxfordhb/9780190849061.013.11] is_a: UBERON:0007247 ! nucleus of superior olivary complex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440044 name: upper layers of the cortex namespace: uberon def: "A laminar subdivision of the neocortex that is comprised of the more surface layers, commonly layers two through four." [DOI:10.1101/2022.10.12.511898] is_a: UBERON:8440004 ! laminar subdivision of the cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440045 name: second visual cortical area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that is rostral to area 17, caudal to area 19 and also abuts PPc and area 20a." [PMID:30632160] synonym: "area 18 (sensu Mustela putorius furo)" EXACT [PMID:30632160] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440046 name: third visual cortical area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret located rostral to area 18 and caudal to area 21." [PMID:11884356, PMID:11884357] synonym: "area 19 (sensu Mustela putorius furo)" EXACT [PMID:11884357] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440047 name: fourth visual cortical area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that is caudal to the suprasylvian visual areas and rostral to area 19." [PMID:11884357] synonym: "area 21 (sensu Mustela putorius furo)" EXACT [PMID:11884357] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440048 name: temporal visual area a (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that is posterior to area 20b and lies lateral to areas 17, 18, and 19." [PMID:15054048] synonym: "area 20a (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440049 name: temporal visual area b (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that is posterior to area PS and anterior to 20a." [PMID:15054048] synonym: "area 20b (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440050 name: posterior parietal rostral cortical area (sensu Mustela putorius furo) namespace: uberon def: "A multimodal area of the ferret involved in vision and somatosensation that lies between the medial wall of the hemisphere and the medial lip of the suprasylvian sulcus and is posterior to caudal somatosensory cortex (SIII) and anterior to PPc." [PMID:12427679] synonym: "posterior parietal cortex, rostral part (sensu Mustela putorius furo)" EXACT [DOI:10.1007/978-3-319-76626-3] synonym: "PPr (sensu Mustela putorius furo)" EXACT [PMID:12427679] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440051 name: lower layers of the cortex namespace: uberon def: "A laminar subdivision of the neocortex that is comprised of the deeper layers, commonly layers five and six, however, could also consist part of layer four." [DOI:10.1101/2022.10.12.511898] is_a: UBERON:8440004 ! laminar subdivision of the cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440052 name: posterior parietal caudal cortical area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that lies between the medial wall of the hemisphere and the medial lip of the suprasylvian sulcus and is posterior to PPr and anterior to area 18 (on the lateral gyrus) and area 21 (on the suprasylvian gyrus)." [PMID:12427679] synonym: "posterior parietal cortex, caudal part (sensu Mustela putorius furo)" EXACT [DOI:10.1007/978-3-319-76626-3] synonym: "PPc (sensu Mustela putorius furo)" EXACT [PMID:12427679] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440054 name: anteromedial lateral suprasylvian visual area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that lies medial to the fundus in the suprasylvian sulcus, posterior to the MRSS and anterior to the PMLS." [PMID:18282308, PMID:20853515] synonym: "AMLS (sensu Mustela putorius furo)" EXACT [PMID:18282308, PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440055 name: anterolateral lateral suprasylvian visual area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that lies on the lateral bank of the suprasylvian sulcus, posterior to SIII, anterior to area PLLS and medial to A1." [PMID:18282308, PMID:20853515] synonym: "ALLS (sensu Mustela putorius furo)" EXACT [PMID:18282308, PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440056 name: posteromedial lateral suprasylvian visual area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that is located in the posterior bank of the suprasylvian sulcus." [PMID:31371456] synonym: "PMLS (sensu Mustela putorius furo)" EXACT [PMID:30595516, PMID:31371456] synonym: "PPS (sensu Mustela putorius furo)" EXACT [PMID:16135782] synonym: "PSS (sensu Mustela putorius furo)" EXACT [PMID:30595516, PMID:31371456] synonym: "SSY (sensu Mustela putorius furo)" EXACT [PMID:15892103] synonym: "Ssy (sensu Mustela putorius furo)" EXACT [PMID:15892103] synonym: "suprasylvian sulcal visual area (sensu Mustela putorius furo)" EXACT [PMID:15892103] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440059 name: posterolateral lateral suprasylvian visual area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret located in the lateral bank of the suprasylvian sulcus posterior to ALLS, anteriomedial to DLS and lateral to PMLS." [PMID:20853515] synonym: "PLLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440060 name: dorsal lateral suprasylvian visual cortical area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret located in the lateral bank of the suprasylvian sulcus anterior to VLS and posterior to PLLS." [PMID:20853515] synonym: "DLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440061 name: ventral lateral suprasylvian visual area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret located in the medial bank of the suprasylvian sulvus lateral to area PMLS." [PMID:20853515] synonym: "VLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440062 name: posterior suprasylvian visual cortical area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret that is lateral to the occipital visual areas (area 17, 18, 19 and 21), medial to perirhinal cortex and anterior to area 20b." [PMID:15054048] synonym: "PS (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain relationship: part_of UBERON:0000411 ! visual cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440063 name: anterior ectosylvian visual area (sensu Mustela putorius furo) namespace: uberon def: "A multimodal area in the ferret responsive to visual, somatic, and auditory stimuli. The anterior border of AEV is coincident with the anterior portion of the ectosylvian gyrus containing higher order somatosensory cortical areas and the posterior border abuts higher order auditory cortical areas." [PMID:16101752] synonym: "AEV (sensu Mustela putorius furo)" EXACT [PMID:16101752] is_a: UBERON:0035014 ! functional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440064 name: spenial visual area (sensu Mustela putorius furo) namespace: uberon def: "A visual area in the ferret located on the dorsal bank of the splenial sulcus between the medial border of area 17 and the lateral borter of CVA." [DOI:10.1007/978-3-319-76626-3, PMID:20853515] synonym: "SPLC (sensu Mustela putorius furo)" EXACT [PMID:20853515] synonym: "splenial sulcal cortex (sensu Mustela putorius furo)" EXACT [PMID:20853515] synonym: "SVA (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440066 name: cingulate visual area (sensu Mustela putorius furo) namespace: uberon def: "A visual area of the ferret located in the fundus of the splenial sulcus medial to SVA." [PMID:20853515] synonym: "CVA (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440067 name: A lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) namespace: uberon def: "A major laminae of the lateral geniculate nucleus of the ferret receiving crossed retinal inputs, located medial to the C laminae and lateral to the A1 and P laminae." [PMID:7309920] synonym: "A (sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440068 name: A1 lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) namespace: uberon def: "A major laminae of the lateral geniculate nucleus of the ferret receiving uncrossed retinal inputs, located medial to the C and A laminae (Linden, Guillery & Cucchiaro, 1981)" [PMID:7309920] synonym: "A1(sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440069 name: C lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) namespace: uberon def: "The most lateral laminae of the LGN of the ferret. The C laminae includes the C lamina, which is the innermost layer, followed by C1, C2, and C3 being the outermost lamina." [PMID:7309920] synonym: "C (sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440070 name: Perigeniculate lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) namespace: uberon def: "A lamina of the LGN in the ferret located medial to the A lamina in the rostral regions of the visual thalamus ((Linden, Guillery & Cucchiaro, 1981; Dell, Innocenti, Hilgetag, & Manger, 2019)." [PMID:30632160, PMID:7309920] synonym: "P (sensu Mustela putorius furo)" EXACT [PMID:30632160, PMID:7309920] is_a: UBERON:0035014 ! functional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1112-5832 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-5480-427X [Term] id: UBERON:8440072 name: lateral tegmental nucleus namespace: uberon def: "A nucleus of the brain that is embedded in the pontine tegmentum, it is defined on the basis of inputs from the lateral hypothalamic area and central amygdalar nucleus, it is located ventral to the locus ceruleus, dorsal to Barrington's nucleus, lateral to the laterodorsal tegmental nucleus, and medial to the midbrain trigeminal nucleus." [neuronames:1957] synonym: "LTN" EXACT OMO:0003000 [MBA:283] xref: MBA:283 xref: neuronames:1957 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440073 name: magnocellular reticular nucleus namespace: uberon def: "A nucleus of the brain that is the most ventral portion of the gigantocellular nucleus in the medullary reticular formation, between the lateral paragigantocellular nucleus and the midline or nucleus raphe magnus. Functionally it belongs to the reticular formation (functional) of the subcortical motor system." [NeuroNames:1801] synonym: "MARN" EXACT OMO:0003000 [MBA:307] xref: MBA:307 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002155 ! gigantocellular nucleus relationship: part_of UBERON:0025525 ! motor system property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440074 name: interstitial nucleus of the vestibular nerve namespace: uberon def: "A cluster of large nerve cells distributed in the vestibular component of vestibulocochlear nerve fibers that functionally belong to the vestibulomotor regions of the behavioral control column." [NeuroNames:719] comment: Interstitial nucleus of the vestibular nerve is revealed in Nissl stained sections and stain for acetylcholinesterase. {xref="NeuroNames:719"} synonym: "INV" EXACT OMO:0003000 [MBA:76] synonym: "ISVe" EXACT OMO:0003000 [NeuroNames:719] xref: MBA:76 xref: NeuroNames:719 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002731 ! vestibulocochlear nerve root property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440075 name: gustatory cortex namespace: uberon def: "The part of the cerebral cortex that is responsible for the perception of taste." [WikipediaVersioned:Gustatory_cortex&oldid=1048584788] synonym: "gustatory area" EXACT [MBA:1057] xref: MBA:1057 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8440076 name: somatomotor area namespace: uberon def: "A part of the cerebral cortex that comprises of the primary motor cortex and the premotor cortex." [MBA:500] xref: MBA:500 is_a: UBERON:0002616 ! regional part of brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596 [Term] id: UBERON:8480001 name: capillary of brain namespace: uberon def: "A capillary that is part of the brain." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0003499 ! brain blood vessel relationship: part_of UBERON:0000955 ! brain property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-0819-0473 property_value: http://purl.org/dc/terms/date "2022-06-24T09:28:31Z" xsd:dateTime [Term] id: http://owltools.org/Q [Typedef] id: part_of name: part of name: part_of namespace: quality namespace: spatial namespace: uberon def: "a core relation that holds between a part and its whole" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam xref: BFO:0000050 property_value: IAO:0000111 "is part of" xsd:string property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 property_value: RO:0040042 BFO:0000002 property_value: RO:0040042 BFO:0000003 property_value: RO:0040042 BFO:0000004 property_value: RO:0040042 BFO:0000017 property_value: RO:0040042 BFO:0000019 property_value: RO:0040042 BFO:0000020 property_value: RO:0040042 BFO:0000031 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of" xsd:string property_value: seeAlso "https://wiki.geneontology.org/Part_of" xsd:anyURI is_transitive: true