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Surface structure definition #24

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wdahdul opened this issue Aug 3, 2011 · 2 comments
Closed

Surface structure definition #24

wdahdul opened this issue Aug 3, 2011 · 2 comments

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@wdahdul
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wdahdul commented Aug 3, 2011

From the recent doc "VAO-UBERON-text-diffs"

VAO:0000001 : surface structure
VAO: Organism subdivision which is the collection of anatomical structures on the body surface.
UBR: Organism subdivision that is the collection of anatomical structures on the body surface[ZFA].

CJM-NOTES:Use VAO

Note: Wasila will replace "which" with "that" in VAO definition

@cmungall
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cmungall commented Aug 3, 2011

Not sure about the ZFA-derived definition here. If SS is the collection, then feature part_of some SS, which doesn't seem right.

Also, is a feather really an organism subdivision, according to CARO2?

I think we need a list of examples and counter-examples here

cmungall added a commit that referenced this issue Jul 5, 2013
Defined surface structure ot be any thing that is part of this

Addresses #24

But still tidying and possible obsoletion to go
cmungall added a commit that referenced this issue Jul 5, 2013
Revamped release pipeline, ext terms now included in main uberon
release and downstream files

Minor changes:

    renamed 'surface' to be 'external covering of organism'

    Defined surface structure ot be any thing that is part of this

    Addresses #24

    But still tidying and possible obsoletion to go

    made path to organism over part_of more complete

    complete efo slim

    Rib and thoracic skeleton changes

     * NT: rib skeletal system
     * NT: thoracic skeleton
     * renemed rob cage to thoracic rib cage
     * removed assumption that ribs are part of rib cage - taxon GCI - Addresses issue #288

    This commit addresses #288

    NT: endostylar duct. Address issue #285

     NTs: fissures: pre and postcentral. primary, ansoparamedian. Fixed xrefs to NIF

    joints design pattern. Addresses #283

    synced with BSPO

    obsoleted intermediate filament and neurofilament. Addresses #273

    renamed placental labyrinth

     cnida definitions. Additional synonyms from PD

    changed IRI. Fixes #280

    Synonym tagging. Addresses #278

    Replaced non-ascii quotes. Fixes #276

    NTs: temporal fenestra and subtypes

    Aligned with BSPO. made EFO to Uberon mostly 1:1
cmungall added a commit that referenced this issue Jul 5, 2013
Defined surface structure ot be any thing that is part of this

Addresses #24

But still tidying and possible obsoletion to go
cmungall added a commit that referenced this issue Jul 5, 2013
Revamped release pipeline, ext terms now included in main uberon
release and downstream files

Minor changes:

    renamed 'surface' to be 'external covering of organism'

    Defined surface structure ot be any thing that is part of this

    Addresses #24

    But still tidying and possible obsoletion to go

    made path to organism over part_of more complete

    complete efo slim

    Rib and thoracic skeleton changes

     * NT: rib skeletal system
     * NT: thoracic skeleton
     * renemed rob cage to thoracic rib cage
     * removed assumption that ribs are part of rib cage - taxon GCI - Addresses issue #288

    This commit addresses #288

    NT: endostylar duct. Address issue #285

     NTs: fissures: pre and postcentral. primary, ansoparamedian. Fixed xrefs to NIF

    joints design pattern. Addresses #283

    synced with BSPO

    obsoleted intermediate filament and neurofilament. Addresses #273

    renamed placental labyrinth

     cnida definitions. Additional synonyms from PD

    changed IRI. Fixes #280

    Synonym tagging. Addresses #278

    Replaced non-ascii quotes. Fixes #276

    NTs: temporal fenestra and subtypes

    Aligned with BSPO. made EFO to Uberon mostly 1:1
@cmungall
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currently:

UBERON:0003102 ! surface structure
def: "Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism." [http://orcid.org/0000-0002-6601-2165, http://purl.obolibrary.org/obo/uberon/tracker/24]

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