format-version: 1.2 data-version: releases/2022-02-14 subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology "" subsetdef: http://purl.obolibrary.org/obo/valid_for_gocam "" subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis" subsetdef: ZECO:0000267 "" default-namespace: zebrafish_experimental_conditions_ontology ontology: zeco property_value: http://purl.org/dc/elements/1.1/description "Ontology of Zebrafish Experimental Conditions" xsd:string property_value: http://purl.org/dc/elements/1.1/title "Zebrafish Experimental Conditions Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ property_value: owl:versionInfo "2022-02-14" xsd:string [Term] id: ZECO:0000100 name: conditions def: "The state in which an organism exists. " [] [Term] id: ZECO:0000101 name: control conditions def: "Condition which serves as a standard against which experimental conditions can be compared." [] subset: ZECO:0000267 is_a: ZECO:0000100 ! conditions [Term] id: ZECO:0000102 name: generic control def: "Control condition in which the conditions of the organism in the control experiment are not standard but are being used as the condition against which the experimental condition is compared." [] synonym: "innocuous condition" EXACT [] is_a: ZECO:0000101 ! control conditions [Term] id: ZECO:0000103 name: standard conditions def: "Experimental condition that is the standard environment for zebrafish husbandry, as described in ‘The Zebrafish Book’. In general the standard environment utilizes contaminant free tank water, heated to 28.5 degrees C, with the fish fed a normal contaminant free diet, with standard osmolarity, pH, and normal light cycle of 14hr light/10hr dark." [] subset: ZECO:0000267 is_a: ZECO:0000100 ! conditions [Term] id: ZECO:0000104 name: experimental conditions def: "Condition in which variables of the experiment are manipulated to determine the variables effect by comparing to a control condition." [] subset: ZECO:0000267 is_a: ZECO:0000100 ! conditions [Term] id: ZECO:0000105 name: biological treatment def: "Experimental condition in which the organism is treated with a microorganism." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000106 name: bacterial treatment def: "Biological treatment in which fish have been infected with bacteria. This infection can be done by addition of bacteria in the water or by injection of bacteria, (for example in the brain ventricle, in the caudal vein, in the yolk sac), or ingestion, or other means." [] is_a: ZECO:0000105 ! biological treatment [Term] id: ZECO:0000107 name: fungal treatment def: "Biological treatment in which fish have been infected with a fungus." [] is_a: ZECO:0000105 ! biological treatment [Term] id: ZECO:0000108 name: germ free def: "Biological treatment in which fish were raised in the absence of bacteria." [] is_a: ZECO:0000105 ! biological treatment [Term] id: ZECO:0000109 name: protozoan treatment def: "Biological treatment in which fish have been infected with protozoa." [] is_a: ZECO:0000105 ! biological treatment [Term] id: ZECO:0000110 name: viral treatment def: "Biological treatment in which fish have been infected with a virus." [] is_a: ZECO:0000105 ! biological treatment [Term] id: ZECO:0000111 name: chemical treatment def: "Experimental condition in which the fish is treated with a chemical substance. This treatment could be administered by adding the chemical substance to the tank water, injections, or by consumption." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000112 name: diet def: "Experimental condition where the food of the zebrafish is manipulated in some way." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000113 name: food availability def: "Experimental condition in which the availability of food is manipulated." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000114 name: fasting def: "Limited food availability condition in which there is no food provided." [] is_a: ZECO:0000115 ! limited food availability [Term] id: ZECO:0000115 name: limited food availability def: "Food availability condition in which food is provided in limited supply." [] is_a: ZECO:0000113 ! food availability [Term] id: ZECO:0000116 name: unlimited food availability def: "Food availability condition in which food is available in unlimited supply." [] is_a: ZECO:0000247 ! increased food availability [Term] id: ZECO:0000117 name: food content def: "Diet condition in which the contents of the food is manipulated." [] is_a: ZECO:0000112 ! diet [Term] id: ZECO:0000118 name: cholesterol content def: "Food content condition in which the amount of cholesterol in the diet is manipulated." [] is_a: ZECO:0000117 ! food content [Term] id: ZECO:0000119 name: high cholesterol def: "Cholesterol content condition in which the amount of cholesterol in the diet is elevated." [] is_a: ZECO:0000118 ! cholesterol content [Term] id: ZECO:0000120 name: low cholesterol def: "Cholesterol content condition in which the amount of cholesterol in the diet is reduced." [] is_a: ZECO:0000118 ! cholesterol content [Term] id: ZECO:0000121 name: fat content def: "Food content condition in which the amount of fat in the diet is manipulated." [] is_a: ZECO:0000117 ! food content [Term] id: ZECO:0000122 name: high fat def: "Fat content condition in which the amount of fat in the diet is elevated." [] is_a: ZECO:0000121 ! fat content is_a: ZECO:0000251 ! nutrient increased [Term] id: ZECO:0000123 name: high saturated fat def: "High fat condition in which the amount of saturated fat in the diet is elevated." [] is_a: ZECO:0000122 ! high fat [Term] id: ZECO:0000124 name: high monounsaturated fat def: "High fat condition in which the amount of monounsaturated fat in the diet is elevated." [] is_a: ZECO:0000122 ! high fat [Term] id: ZECO:0000125 name: low fat def: "Fat content condition in which the amount of fat in the diet is reduced." [] is_a: ZECO:0000121 ! fat content is_a: ZECO:0000250 ! nutrient decreased [Term] id: ZECO:0000126 name: low trans fat def: "Low fat condition in which the amount of trans fat in the diet is reduced." [] is_a: ZECO:0000125 ! low fat [Term] id: ZECO:0000127 name: low polyunsaturated fat def: "Low fat condition in which the amount of polyunsaturated fat in the diet is reduced." [] is_a: ZECO:0000125 ! low fat [Term] id: ZECO:0000128 name: protein content def: "Food content condition in which the amount of protein in the diet is manipulated." [] is_a: ZECO:0000117 ! food content [Term] id: ZECO:0000129 name: high protein def: "Protein content condition in which the protein in the diet is elevated." [] is_a: ZECO:0000128 ! protein content is_a: ZECO:0000251 ! nutrient increased [Term] id: ZECO:0000130 name: low protein def: "Protein content condition in which the protein in the diet is reduced." [] is_a: ZECO:0000128 ! protein content is_a: ZECO:0000250 ! nutrient decreased [Term] id: ZECO:0000131 name: stress subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000132 name: high sugar def: "High carbohydrate conditions in which the amount of sugar in the diet is elevated." [] is_a: ZECO:0000241 ! high carbohydrate [Term] id: ZECO:0000133 name: high fructose def: "High sugar condition in which the amount of fructose in the diet is elevated." [] is_a: ZECO:0000132 ! high sugar [Term] id: ZECO:0000134 name: high glucose def: "High sugar condition in which the amount of glucose in the diet is elevated." [] is_a: ZECO:0000132 ! high sugar [Term] id: ZECO:0000135 name: high sucrose def: "High sugar condition in which the amount of sucrose in the diet is elevated." [] is_a: ZECO:0000132 ! high sugar [Term] id: ZECO:0000136 name: low sugar def: "High carbohydrate conditions in which the amount of sugar in the diet is reduced." [] is_a: ZECO:0000242 ! low carbohydrate [Term] id: ZECO:0000137 name: low sucrose def: "Low sugar condition in which the amount of sucrose in the diet is reduced." [] is_a: ZECO:0000136 ! low sugar [Term] id: ZECO:0000138 name: low fructose def: "Low sugar condition in which the amount of fructose in the diet is reduced." [] is_a: ZECO:0000136 ! low sugar [Term] id: ZECO:0000139 name: low glucose def: "Low sugar condition in which the amount of glucose in the diet is reduced." [] is_a: ZECO:0000136 ! low sugar [Term] id: ZECO:0000140 name: housing conditions def: "Experimental condition that manipulates the enclosure of the fish." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000141 name: open roofed def: "Housing condition in which the roof of the enclosure if open." [] is_a: ZECO:0000140 ! housing conditions [Term] id: ZECO:0000142 name: overcrowding def: "Housing condition in which the enclosure of the fish is overcrowded, containing an excess of fish that reduces the available space of the enclosure." [] synonym: "high density" EXACT [] is_a: ZECO:0000140 ! housing conditions [Term] id: ZECO:0000143 name: in vitro culture def: "Experimental condition in which components of the fish have been removed and are maintained separately." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000144 name: organ culture def: "In vitro culture condition in which an organ is dissected/isolated/collected from the fish and placed in culture. The analysis of the experiment is done on this organ in culture." [] is_a: ZECO:0000143 ! in vitro culture [Term] id: ZECO:0000145 name: primary cell culture def: "In vitro culture condition in which an embryo or adult fish is dissociated to a single cell suspension. The analysis is made on this cell culture." [] is_a: ZECO:0000143 ! in vitro culture [Term] id: ZECO:0000146 name: lighting conditions def: "Experimental condition in which the intensity, wavelength, and/or duration of illumination is (are) different from the one in controlled conditions." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000147 name: light duration is_a: ZECO:0000146 ! lighting conditions [Term] id: ZECO:0000148 name: altered light dark cycle is_a: ZECO:0000147 ! light duration [Term] id: ZECO:0000149 name: constant dark is_a: ZECO:0000147 ! light duration [Term] id: ZECO:0000150 name: constant light is_a: ZECO:0000147 ! light duration [Term] id: ZECO:0000151 name: light intensity is_a: ZECO:0000146 ! lighting conditions [Term] id: ZECO:0000152 name: high light intensity is_a: ZECO:0000151 ! light intensity [Term] id: ZECO:0000153 name: low light intensity is_a: ZECO:0000151 ! light intensity [Term] id: ZECO:0000154 name: gravity def: "Experimental condition in which gravity forces are manipulated. For zebrafish, this can be in the form of centrifugal forces or trips to outerspace." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000155 name: mechanical stress def: "Experimental condition in which an external mechanical force is applied to the fish or part of the fish." [] is_a: ZECO:0000131 ! stress [Term] id: ZECO:0000156 name: vibration is_a: ZECO:0000155 ! mechanical stress [Term] id: ZECO:0000157 name: water flow is_a: ZECO:0000155 ! mechanical stress [Term] id: ZECO:0000158 name: circular flow is_a: ZECO:0000157 ! water flow [Term] id: ZECO:0000159 name: through flow is_a: ZECO:0000157 ! water flow [Term] id: ZECO:0000160 name: temperature exposure def: "Experimental condition in which the zebrafish is exposed to an increased or decreased temperature." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000161 name: stable temperature exposure def: "Temperature exposure condition in which fish are raised in temperature different (lower or higher) than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." [] is_a: ZECO:0000160 ! temperature exposure [Term] id: ZECO:0000162 name: cold exposure def: "Temperature exposure condition in which fish are raised in temperature that is lower than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." [] is_a: ZECO:0000161 ! stable temperature exposure [Term] id: ZECO:0000163 name: heat exposure def: "Temperature exposure condition in which fish are raised in temperature that is higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." [] is_a: ZECO:0000161 ! stable temperature exposure [Term] id: ZECO:0000164 name: temperature shock def: "Temperature exposure condition in which fish are subjected for a short period of time to temperature that is lower or higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." [] is_a: ZECO:0000160 ! temperature exposure [Term] id: ZECO:0000165 name: cold shock def: "Temperature shock condition in which fish are subjected for a short period of time to temperature lower than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." [] is_a: ZECO:0000164 ! temperature shock [Term] id: ZECO:0000166 name: heat shock def: "Temperature shock condition in which fish are subjected for a short period of time to temperature higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." [] is_a: ZECO:0000164 ! temperature shock [Term] id: ZECO:0000168 name: ablation def: "Targeted destruction of an anatomical structure." [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000169 name: chemical ablation def: "Experimental condition which uses a chemical to ablate an anatomical structure or cell." [] is_a: ZECO:0000168 ! ablation [Term] id: ZECO:0000170 name: light ablation def: "Experimental condition which uses focused light to ablate an anatomical structure or cell." [] is_a: ZECO:0000168 ! ablation is_a: ZECO:0000245 ! light damage [Term] id: ZECO:0000171 name: resection def: "Surgical manipulation in which a particular organ, appendage, or part of an organism is removed." [] is_a: ZECO:0000176 ! surgical manipulation [Term] id: ZECO:0000172 name: amputation def: "Resection condtion in which all or part of an extremity such as the fin or tail are removed." [] is_a: ZECO:0000171 ! resection [Term] id: ZECO:0000173 name: vaccine treatment def: "Biological treatment in which the organism is treated with a substance to stimulate the production of antibodies and provide immunity against one or several diseases." [] is_a: ZECO:0000105 ! biological treatment [Term] id: ZECO:0000174 name: laceration def: "Experimental condition in which there is a deep cut or tear of the flesh." [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000176 name: surgical manipulation def: "Experimental condition that involves manual or instrumental techniques to alter anatomical structures." [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000177 name: xenotransplantation def: "Experimental condition in which living cells or tissues from one species are transplanted into another." [] is_a: ZECO:0000105 ! biological treatment [Term] id: ZECO:0000178 name: perforation def: "Experimental condition in which a hole or break in the membranes of an organ or structure of the body is created." [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000179 name: abrasion def: "Experimental condition that results in superficial damage of tissue such that it is scraped or worn away." [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000180 name: contusion def: "Experimental condition that results in hematoma of tissue in which capillaries and sometimes venules are damaged by trauma, allowing blood to seep, hemorrhage, or extravasate into the surrounding interstitial tissues. (https://en.wikipedia.org/wiki/Bruise)" [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000181 name: transection def: "Cutting transversly of an organ or tissue. Type of cutting often used to divide the spinal cord to investigate neural regeneration in zebrafish." [] is_a: ZECO:0000176 ! surgical manipulation [Term] id: ZECO:0000182 name: water quality def: "Experimental condition in which a chemical or physical characteristic of water is altered." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000183 name: gas composition comment: Water quality condition that alters the concentration of atmospheric gases in water. is_a: ZECO:0000182 ! water quality [Term] id: ZECO:0000184 name: carbon dioxide content def: "A gas composition condition that alters the concentraion of carbion dioxide." [] is_a: ZECO:0000183 ! gas composition [Term] id: ZECO:0000185 name: hypercapnia is_a: ZECO:0000184 ! carbon dioxide content [Term] id: ZECO:0000186 name: hypocapnia is_a: ZECO:0000184 ! carbon dioxide content [Term] id: ZECO:0000187 name: oxygen content def: "A gas composition condition that alters the concentraion of oxygen." [] is_a: ZECO:0000183 ! gas composition [Term] id: ZECO:0000188 name: hyperoxia def: "An oxygen content with high concentration of oxygen." [] is_a: ZECO:0000187 ! oxygen content [Term] id: ZECO:0000189 name: hypoxia def: "An oxygen content with low concentration of oxygen." [] is_a: ZECO:0000187 ! oxygen content [Term] id: ZECO:0000190 name: ion composition is_a: ZECO:0000182 ! water quality [Term] id: ZECO:0000191 name: modified calcium composition is_a: ZECO:0000190 ! ion composition [Term] id: ZECO:0000192 name: high calcium is_a: ZECO:0000191 ! modified calcium composition [Term] id: ZECO:0000193 name: low calcium is_a: ZECO:0000191 ! modified calcium composition [Term] id: ZECO:0000194 name: modified potassium composition is_a: ZECO:0000190 ! ion composition [Term] id: ZECO:0000195 name: high potassium is_a: ZECO:0000194 ! modified potassium composition [Term] id: ZECO:0000196 name: low potassium is_a: ZECO:0000194 ! modified potassium composition [Term] id: ZECO:0000197 name: modified sodium composition is_a: ZECO:0000190 ! ion composition [Term] id: ZECO:0000198 name: high sodium is_a: ZECO:0000197 ! modified sodium composition [Term] id: ZECO:0000199 name: low sodium is_a: ZECO:0000197 ! modified sodium composition [Term] id: ZECO:0000200 name: pH is_a: ZECO:0000190 ! ion composition [Term] id: ZECO:0000201 name: acidic def: "Experimental condition in which the pH of the water is lower than the pH of the controlled conditions." [] is_a: ZECO:0000200 ! pH [Term] id: ZECO:0000202 name: basic def: "Experimental condition in which the pH of the water is higher than the pH of the controlled conditions." [] is_a: ZECO:0000200 ! pH [Term] id: ZECO:0000203 name: water salinity is_a: ZECO:0000182 ! water quality [Term] id: ZECO:0000204 name: hypertonic def: "Experimental condition in which the salt concentration is higher than the one in controlled conditions." [] is_a: ZECO:0000203 ! water salinity [Term] id: ZECO:0000205 name: hypotonic def: "Experimental condition in which the salt concentration is lower than the one in controlled conditions." [] is_a: ZECO:0000203 ! water salinity [Term] id: ZECO:0000206 name: isotonic is_a: ZECO:0000203 ! water salinity [Term] id: ZECO:0000207 name: stable is_a: ZECO:0000203 ! water salinity [Term] id: ZECO:0000208 name: radiation subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000209 name: electromagnetic radiation is_a: ZECO:0000208 ! radiation [Term] id: ZECO:0000210 name: radio waves is_a: ZECO:0000209 ! electromagnetic radiation [Term] id: ZECO:0000211 name: microwaves is_a: ZECO:0000209 ! electromagnetic radiation [Term] id: ZECO:0000212 name: infared is_a: ZECO:0000209 ! electromagnetic radiation [Term] id: ZECO:0000213 name: visible light def: "Electromagnetic radiation with a wavelength from 400 nm to 700 nm. Visible light referes to the light which is visible to the human eye and is responsible fo the sense of sight." [https://en.wikipedia.org/wiki/Light] is_a: ZECO:0000209 ! electromagnetic radiation [Term] id: ZECO:0000214 name: ultraviolet light def: "Electromagnetic radiation with a wavelength from 10 nm to 400nm. Long-wavelength ultraviolet radiation can cause chemical reactions and causes many substances to glow or fluoresce." [https://en.wikipedia.org/wiki/Ultraviolet] synonym: "UV" EXACT [] synonym: "UV light" EXACT [] is_a: ZECO:0000209 ! electromagnetic radiation [Term] id: ZECO:0000215 name: x-ray is_a: ZECO:0000209 ! electromagnetic radiation [Term] id: ZECO:0000216 name: gamma ray is_a: ZECO:0000209 ! electromagnetic radiation [Term] id: ZECO:0000217 name: particle radiation is_a: ZECO:0000208 ! radiation [Term] id: ZECO:0000218 name: proton is_a: ZECO:0000217 ! particle radiation [Term] id: ZECO:0000219 name: neutron is_a: ZECO:0000217 ! particle radiation [Term] id: ZECO:0000220 name: acoustic radiation is_a: ZECO:0000208 ! radiation [Term] id: ZECO:0000221 name: alpha particle is_a: ZECO:0000217 ! particle radiation [Term] id: ZECO:0000222 name: electromagnetic field def: "Experimental condition in which the fish is exposed to a physical field that is produced by electrically charged objects." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000223 name: electric field def: "Experimental condition where the fish is exposed to materials that produce an electric field." [] is_a: ZECO:0000222 ! electromagnetic field [Term] id: ZECO:0000224 name: magnetic field def: "Experimental condition where the fish is exposed to magnetic materials." [] is_a: ZECO:0000222 ! electromagnetic field [Term] id: ZECO:0000225 name: high polysunsaturated fat def: "High fat condition in which the amount of polyunsaturated fat in the diet is elevated." [] is_a: ZECO:0000122 ! high fat [Term] id: ZECO:0000226 name: high trans fat def: "High fat condition in which the amount of trans fat in the diet is elevated." [] is_a: ZECO:0000122 ! high fat [Term] id: ZECO:0000227 name: low saturated fat def: "Low fat condition in which the amount of saturated fat in the diet is reduced." [] is_a: ZECO:0000125 ! low fat [Term] id: ZECO:0000228 name: low monounsaturated fat def: "Low fat condition in which the amount of monounsaturated fat in the diet is reduced." [] is_a: ZECO:0000125 ! low fat [Term] id: ZECO:0000229 name: physical alteration def: "Experimental condition in which an anatomical structure, cell, or organ has sustained targeted physical change, usually through the use of an instrument." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000230 name: bacterial treatment by injection def: "Bacterial treatment where the bacteria are injected into the fish." [] is_a: ZECO:0000106 ! bacterial treatment [Term] id: ZECO:0000231 name: bacterial treatment by exposure to environment def: "Bacterial treatment where the bacteria are introduced via the environment. For zebrafish this is the tank water." [] is_a: ZECO:0000106 ! bacterial treatment [Term] id: ZECO:0000232 name: fungal treatment by injection def: "Fungal treatment where the fungus is injected into the fish." [] is_a: ZECO:0000107 ! fungal treatment [Term] id: ZECO:0000233 name: fungal treatment by exposure to environment def: "Fungal treatment where the fungus is introduced via the environment. For zebrafish this is the tank water." [] is_a: ZECO:0000107 ! fungal treatment [Term] id: ZECO:0000234 name: viral treatment by exposure to environment def: "Viral treatment where the virus is introduced via the environment. For zebrafish this is the tank water." [] is_a: ZECO:0000110 ! viral treatment [Term] id: ZECO:0000235 name: viral treatment by injection def: "Viral treatment where the virus is injected into the fish." [] is_a: ZECO:0000110 ! viral treatment [Term] id: ZECO:0000236 name: cancer xenotransplantation def: "Xenotransplantation condition in which cancer cells are injected or grafted into the zebrafish." [] is_a: ZECO:0000177 ! xenotransplantation [Term] id: ZECO:0000237 name: chemical treatment by injection def: "Chemical treatment in which the chemical is injected into the zebrafish." [] is_a: ZECO:0000111 ! chemical treatment [Term] id: ZECO:0000238 name: chemical treatment by environment def: "Chemical treatment condition in which the chemical is introduced through the environment. For zebrafish this is the tank water." [] is_a: ZECO:0000111 ! chemical treatment [Term] id: ZECO:0000239 name: chemical treatment by diet def: "Chemical treatment condition in which the chemical is introduced through the diet." [] is_a: ZECO:0000111 ! chemical treatment is_a: ZECO:0000112 ! diet [Term] id: ZECO:0000240 name: carbohydrate content def: "Food content condition in which the amount of carbohydrate in the diet is manipulated." [] is_a: ZECO:0000117 ! food content [Term] id: ZECO:0000241 name: high carbohydrate def: "Food content condtion in which the amount of carbohydrate in the diet is elevated." [] is_a: ZECO:0000240 ! carbohydrate content is_a: ZECO:0000251 ! nutrient increased [Term] id: ZECO:0000242 name: low carbohydrate def: "Food content condtion in which the amount of carbohydrate in the diet is reduced." [] is_a: ZECO:0000240 ! carbohydrate content is_a: ZECO:0000250 ! nutrient decreased [Term] id: ZECO:0000243 name: stress by handling is_a: ZECO:0000131 ! stress [Term] id: ZECO:0000244 name: ultrasound def: "Mechanical stress condition where the organism is subjected to vibrations having an ultrasonic frequency." [] is_a: ZECO:0000156 ! vibration [Term] id: ZECO:0000245 name: light damage def: "Physical alteration which uses light to damage the anatomical structure, cell, or organ." [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000246 name: undercrowding def: "Housing condition in which the enclosure of the fish is undercrowded,containing a low amount of fish that increases the available space of the enclosure." [] synonym: "low density" EXACT [] is_a: ZECO:0000140 ! housing conditions [Term] id: ZECO:0000247 name: increased food availability def: "Food availability condition in which food is provided in increased supply." [] synonym: "overfeeding" EXACT [] is_a: ZECO:0000113 ! food availability [Term] id: ZECO:0000248 name: cold damage def: "Physical alteration which uses cold to damage an anatomical structure, cell, or organ" [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000249 name: cryoablation def: "Experimental condition which uses a cold instrument to ablate an anatomical structure or cell." [] is_a: ZECO:0000168 ! ablation is_a: ZECO:0000248 ! cold damage [Term] id: ZECO:0000250 name: nutrient decreased def: "Food content condition in which levels of a nutrient are decreased relative to standard diet." [] is_a: ZECO:0000117 ! food content [Term] id: ZECO:0000251 name: nutrient increased def: "Food content condition in which levels of a nutrient are increased relative to standard diet." [] is_a: ZECO:0000117 ! food content [Term] id: ZECO:0000252 name: feeding regime def: "Experimental condition that manipulates the frequency or way an organism is fed." [] subset: ZECO:0000267 is_a: ZECO:0000104 ! experimental conditions [Term] id: ZECO:0000253 name: gavage def: "Feeding regime in which food, drugs, or other substances are administered by force, typically through a tube leading down the throat to the stomach." [] is_a: ZECO:0000252 ! feeding regime [Term] id: ZECO:0000254 name: bacterial treatment by gavage def: "Bacterial treatment condition where bacteria are introduced to the organism by gavage." [] is_a: ZECO:0000106 ! bacterial treatment is_a: ZECO:0000253 ! gavage [Term] id: ZECO:0000255 name: chemical treatment by gavage def: "Chemical treatment condition where the chemical is introduced to the organism by gavage." [] is_a: ZECO:0000111 ! chemical treatment is_a: ZECO:0000253 ! gavage [Term] id: ZECO:0000256 name: bacterial treatment by diet def: "Bacterial treatment where bacteria are introduced via the diet." [] is_a: ZECO:0000106 ! bacterial treatment [Term] id: ZECO:0000259 name: cauterization def: "Condition that uses a cold or hot insturment, electrical current, or chemical to burn or dissolve an anatomical structure to remove or close it off." [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000260 name: thermal cauterization def: "Cauterization of a tissue using a heated instrument." [] is_a: ZECO:0000259 ! cauterization [Term] id: ZECO:0000261 name: compression injury def: "An injury that occurs because of pressure from a heavy object onto a body part. A compression injury may also arise from squeezing of a body part between two objects. https://www.medicinenet.com/crush_injury/definition.htm" [] synonym: "crush injury" EXACT [] is_a: ZECO:0000229 ! physical alteration [Term] id: ZECO:0000262 name: probiotic content def: "Food content condition in which the amount of probiotics in the diet is manipulated" [] is_a: ZECO:0000117 ! food content [Term] id: ZECO:0000263 name: microgravity def: "Experimental condition in which gravity forces are smaller than in control conditions. An example of a microgravity condition would be trips to outerspace." [] is_a: ZECO:0000154 ! gravity [Term] id: ZECO:0000264 name: increased gravity def: "Experimental condition in which gravity forces are greater than in control conditions. An example of an increased gravity condition would be the application of centrifugal forces." [] is_a: ZECO:0000154 ! gravity [Typedef] id: BFO:0000050 name: part of def: "a core relation that holds between a part and its whole" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000111 "is part of" xsd:string property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 property_value: RO:0040042 BFO:0000002 property_value: RO:0040042 BFO:0000003 property_value: RO:0040042 BFO:0000004 property_value: RO:0040042 BFO:0000017 property_value: RO:0040042 BFO:0000019 property_value: RO:0040042 BFO:0000020 property_value: RO:0040042 BFO:0000031 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true inverse_of: BFO:0000051 ! has part [Typedef] id: BFO:0000051 name: has part def: "a core relation that holds between a whole and its part" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000111 "has part" xsd:string property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 is_transitive: true [Typedef] id: RO:0002211 name: regulates def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000116 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000117 "David Hill" xsd:string property_value: IAO:0000117 "Tanya Berardini" xsd:string property_value: IAO:0000119 "GO" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string property_value: IAO:0000589 "regulates (processual)" xsd:string property_value: IAO:0000600 "false" xsd:boolean is_transitive: true