ZFA description.
Zebrafish Anatomy Ontology (ZFA)
OBO-Edit 2.3-beta5
29:11:2022 16:29
zebrafish_anatomical_ontology
1.2
zfinf
CARO part_of NCBITaxon:7955
CL part_of NCBITaxon:7955
TAO part_of NCBITaxon:7955
VSAO part_of NCBITaxon:7955
2022-12-09
definition
term replaced by
PLURAL
cell_slim
subset_property
synonym_type_property
consider
has_alternative_id
has_broad_synonym
database_cross_reference
has_exact_synonym
has_narrow_synonym
has_obo_format_version
has_obo_namespace
has_related_synonym
has_synonym_type
in_subset
shorthand
treat-xrefs-as-genus-differentia
BFO:0000050
zebrafish_anatomical_ontology
part_of
part_of
part of
BFO:0000051
zebrafish_anatomical_ontology
has_part
has_part
has_part
X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X).
BFO:0000062
zebrafish_anatomical_ontology
preceded_by
preceded_by
preceded_by
X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X).
goc:cjm
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y).
RO:0002087
zebrafish_anatomical_ontology
immediately_preceded_by
immediately_preceded_by
immediately_preceded_by
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y).
goc:cjm
RO:0002131
zebrafish_anatomical_ontology
overlaps
overlaps
overlaps
X continuous_with Y if and only if X and Y share a fiat boundary.
RO:0002150
continuous_with
zebrafish_anatomical_ontology
continuous_with
continuous_with
continuous with
X continuous_with Y if and only if X and Y share a fiat boundary.
goc:cjm
RO:0002202
zebrafish_anatomical_ontology
develops_from
develops_from
develops from
x has developmental contribution from y iff x has some part z such that z develops from y.
RO:0002254
has_developmental_contribution_from
zebrafish_anatomical_ontology
has_developmental_contribution_from
has_developmental_contribution_from
has developmental contribution from
x has developmental contribution from y iff x has some part z such that z develops from y.
goc:cjm
c existence starts during s iff start_of(c) part_of s.
RO:0002496
starts_during
zebrafish_anatomical_ontology
existence starts during
start
start
start stage
c existence starts during s iff start_of(c) part_of s.
goc:cjm
c existence ends during s iff end_of(c) part_of s.
RO:0002497
ends_during
zebrafish_anatomical_ontology
existence ends during
end
end
end stage
c existence ends during s iff end_of(c) part_of s.
goc:cjm
The visible division between epiblast and hypoblast in the gastrula.
TAO:0000000
zebrafish_anatomy
ZFA:0000000
Brachet's cleft
The visible division between epiblast and hypoblast in the gastrula.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kupffer's vesicle has been compared to the mouse embryonic node.
TAO:0000001
ciliated organ of asymmetry
zebrafish_anatomy
ZFA:0000001
Kupffer's vesicle
Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kupffer's vesicle has been compared to the mouse embryonic node.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-050328-4
ZFIN:ZDB-PUB-961014-576
ciliated organ of asymmetry
ZFIN:ZDB-PUB-050221-4
true
Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm.
CL:0007016
TAO:0000003
adaxial cells
zebrafish_anatomy
ZFA:0000003
adaxial cell
Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm.
PMID:8951054
adaxial cells
Anterior portion of the axial hypoblast.
TAO:0000004
pre-polster
zebrafish_anatomy
ZFA:0000004
anterior axial hypoblast
Anterior portion of the axial hypoblast.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
pre-polster
ZFIN:ZDB-PUB-051019-5
Blood vessels that carry blood away from the heart.
TAO:0000005
zebrafish_anatomy
arterial system
ZFA:0000005
artery
Blood vessels that carry blood away from the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period.
TAO:0000006
yolk ball
zebrafish_anatomy
ZFA:0000006
ball
The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period.
ZFIN:ZDB-PUB-961014-576
yolk ball
ZFIN:ZDB-PUB-961014-576
A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes.
TAO:0000007
zebrafish_anatomy
ZFA:0000007
blood
A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes.
GOC:cvs
ORCiD:0000-0002-2244-7917
Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.
ZFA:0001661
TAO:0000008
zebrafish_anatomy
brain structure
ZFA:0000008
brain
Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.
GOC:mh
ORCiD:0000-0001-9114-8737
Cavitated compound organ that receives blood flow from the atrium and delivers blood to the body via the aorta. Valves are present to direct flow. There are only two chambers present in the fish heart.
TAO:0000009
ventricle
zebrafish_anatomy
ZFA:0000009
cardiac ventricle
Cavitated compound organ that receives blood flow from the atrium and delivers blood to the body via the aorta. Valves are present to direct flow. There are only two chambers present in the fish heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-020122-4
Anatomical system that functions in circulation and has as its parts the heart and vasculature. The lymphatic system is considered part of the cardiovascular system.
TAO:0000010
zebrafish_anatomy
ZFA:0000010
cardiovascular system
Anatomical system that functions in circulation and has as its parts the heart and vasculature. The lymphatic system is considered part of the cardiovascular system.
GOC:cvs
ORCiD:0000-0002-2244-7917
Extension of the dorsal aorta in the post-vent region.
TAO:0000011
CA
zebrafish_anatomy
ZFA:0000011
caudal artery
Extension of the dorsal aorta in the post-vent region.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
The brain and spinal cord.
TAO:0000012
cns
zebrafish_anatomy
ZFA:0000012
central nervous system
The brain and spinal cord.
ZFIN:ZDB-PUB-961014-576
Ganglion which is located in the head.
TAO:0000013
cranial ganglia
zebrafish_anatomy
presumptive cranial ganglia
ZFA:0000013
cranial ganglion
Ganglion which is located in the head.
GOC:mh
ORCiD:0000-0001-9114-8737
cranial ganglia
Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery.
TAO:0000014
DA
dorsal aortic root
zebrafish_anatomy
ZFA:0000014
dorsal aorta
Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
ZFA:0001512
zebrafish_anatomy
ZFA:0000015
anatomical set
true
The outer layer of the embryo derived from the epiblast. The definitive ectoderm will give rise to such tissues as epidermis, the central nervous system, neural crest, and sensory placode.
TAO:0000016
zebrafish_anatomy
ZFA:0000016
ectoderm
The outer layer of the embryo derived from the epiblast. The definitive ectoderm will give rise to such tissues as epidermis, the central nervous system, neural crest, and sensory placode.
http://zfin.org/zf_info/zfbook/stages/gast.html
TAO:0000017
zebrafish_anatomy
ZFA:0000017
endoderm
The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation.
TAO:0000018
zebrafish_anatomy
ZFA:0000018
epiblast
The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation.
ZFIN:ZDB-PUB-961014-576
A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. It is located directly rostral to the posterior commissure and dorsal to the habenular commissure.
TAO:0000019
corpus pineale
pineal gland
pineal organ
zebrafish_anatomy
ZFA:0000019
epiphysis
A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. It is located directly rostral to the posterior commissure and dorsal to the habenular commissure.
GOC:cvs
GOC:mh
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1268
ZFIN:ZDB-PUB-961014-576
Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo.
CARO:0000042
TAO:0000020
extraembryonic structures
zebrafish_anatomy
ZFA:0000020
extraembryonic structure
Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo.
GOC:mh
ORCiD:0000-0001-9114-8737
extraembryonic structures
true
Multi-tissue structure that is the ventral-most aspect of the developing neural tube. The floor plate is a specialized glial structure with secretory function that spans the rostral-caudal axis from the midbrain to the tail regions. The floor plate is one of first structures that differentiate in the developing nervous system.
TAO:0000022
floorplate
fp
zebrafish_anatomy
ZFA:0000022
The floor plate cells are a row of cells along the a-p axis ~3 cells wide that make up the ventral floor of the early spinal cord. Floor plate cells are prominent rectangular cells with a triangular cross section with one cell in the middle that straddles the ventral midline and usually one cell lateral to the middle cell on both sides. 14hpf.
floor plate
Multi-tissue structure that is the ventral-most aspect of the developing neural tube. The floor plate is a specialized glial structure with secretory function that spans the rostral-caudal axis from the midbrain to the tail regions. The floor plate is one of first structures that differentiate in the developing nervous system.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-980205-16
A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle.
TAO:0000023
DFCs
dorsal forerunner cells
forerunner cells
zebrafish_anatomy
ZFA:0000023
forerunner cell group
A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle.
ZFIN:ZDB-PUB-970107-2
DFCs
dorsal forerunner cells
forerunner cells
Layer of the retina that contains the ganglion cell bodies.
TAO:0000024
ganglion cell layer
zebrafish_anatomy
ZFA:0000024
retinal ganglion cell layer
Layer of the retina that contains the ganglion cell bodies.
GOC:mh
ORCiD:0000-0001-9114-8737
true
A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland.
TAO:0000026
hgg
zebrafish_anatomy
ZFA:0000026
hatching gland
A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
Skeletal system of paired fins.
TAO:0000027
appendicular skeleton
zebrafish_anatomy
ZFA:0000027
paired fin skeleton
Skeletal system of paired fins.
GOC:mh
ORCiD:0000-0001-9114-8737
Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardial precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone.
TAO:0000028
cardiac field
heart primordia
zebrafish_anatomy
ZFA:0000028
heart primordium
Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardial precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone.
ZFIN:ZDB-PUB-010219-2
heart primordia
The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. From Neuroanatomy of the Zebrafish Brain.
TAO:0000029
rhombencephalon
zebrafish_anatomy
ZFA:0000029
hindbrain
The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula utricle senses linear acceleration and gravity. The macula utricle covers most of the floor of the utricle.
TAO:0000030
maculae utricle
zebrafish_anatomy
ZFA:0000030
macula utricle
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula utricle senses linear acceleration and gravity. The macula utricle covers most of the floor of the utricle.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-7
maculae utricle
Portion of tissue that arises from the arise from the lateral edges of the shield and is located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived.
TAO:0000031
zebrafish_anatomy
ZFA:0000031
hypochord
Portion of tissue that arises from the arise from the lateral edges of the shield and is located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived.
ZFIN:ZDB-PUB-000621-3
ZFIN:ZDB-PUB-060807-3
Multi-tissue structure which is the largest portion of diencephalon and is ventrally located. The hypothalamus arises near the end of the segmentation period and the embryonic hypothalamic region gives rise to the neurohypophysis and other diencephalic nuclei.
TAO:0000032
zebrafish_anatomy
ZFA:0000032
hypothalamus
Multi-tissue structure which is the largest portion of diencephalon and is ventrally located. The hypothalamus arises near the end of the segmentation period and the embryonic hypothalamic region gives rise to the neurohypophysis and other diencephalic nuclei.
ZFIN:ZDB-PUB-961014-576
TAO:0000033
ICM
intermediate cell mass of Oellacher
posterior intermediate cell mass
zebrafish_anatomy
ZFA:0000033
intermediate cell mass of mesoderm
A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000034
ll
zebrafish_anatomy
ZFA:0000034
lateral line system
A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
Portion of tissue that is a transparent, biconvex structure located in the eye through which light is focused.
TAO:0000035
lenses
zebrafish_anatomy
ZFA:0000035
lens
Portion of tissue that is a transparent, biconvex structure located in the eye through which light is focused.
GOC:mh
ORCiD:0000-0001-9114-8737
http://encyclopedia.thefreedictionary.com/Lens+(anatomy
lenses
System responsible for the production and movement of bile.
TAO:0000036
zebrafish_anatomy
ZFA:0000036
liver and biliary system
System responsible for the production and movement of bile.
GOC:cvs
ORCiD:0000-0002-2244-7917
Zebrafish anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome.
CARO:0000003
TAO:0000037
anatomical structures
zebrafish_anatomy
ZFA:0000037
anatomical structure
Zebrafish anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome.
GOC:mh
ORCiD:0000-0001-9114-8737
anatomical structures
Embryonic structure, the edge of the blastoderm.
TAO:0000038
zebrafish_anatomy
ZFA:0000038
margin
Embryonic structure, the edge of the blastoderm.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
TAO:0000039
zebrafish_anatomy
ZFA:0000039
median axial vein
Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent.
TAO:0000040
zebrafish_anatomy
median fin
ZFA:0000040
median fin fold
Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0000041
zebrafish_anatomy
ZFA:0000041
mesoderm
The boundary between the mesencephalon and the rhombencephalon.
TAO:0000042
isthmus
mhb
midbrain-hindbrain boundary
zebrafish_anatomy
ZFA:0000042
midbrain hindbrain boundary
The boundary between the mesencephalon and the rhombencephalon.
GOC:cvs
ORCiD:0000-0002-2244-7917
Muscle pioneer cell part of somite 1.
TAO:0000043
muscle pioneers somite 1
zebrafish_anatomy
ZFA:0000043
muscle pioneer somite 1
Muscle pioneer cell part of somite 1.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 1
Portion of somite 14 that gives rise to body wall muscle masses.
TAO:0000044
zebrafish_anatomy
ZFA:0000044
myotome somite 14
Portion of somite 14 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage.
TAO:0000045
zebrafish_anatomy
ZFA:0000045
neural crest
A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage.
ZFIN:ZDB-PUB-961014-576
Portion of retina composed of all the neural tissues in the retina.
TAO:0000046
neural retina
neuroretina
zebrafish_anatomy
ZFA:0000046
retinal neural layer
Portion of retina composed of all the neural tissues in the retina.
GOC:mh
ORCiD:0000-0001-9114-8737
Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired.
TAO:0000047
nasal sac
zebrafish_anatomy
nose
ZFA:0000047
peripheral olfactory organ
Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
Neurogenic placode that gives rise to the olfactory neurons that which convey odor information to the CNS.
TAO:0000048
olfactory placodes
zebrafish_anatomy
ZFA:0000048
olfactory placode
Neurogenic placode that gives rise to the olfactory neurons that which convey odor information to the CNS.
GOC:mh
ORCiD:0000-0001-9114-8737
olfactory placodes
Lumen of optic stalk.
TAO:0000049
optic recesses
zebrafish_anatomy
ZFA:0000049
optic recess
Lumen of optic stalk.
ZFIN:ZDB-PUB-101008-1
optic recesses
Portion of tissue that is comprised of neuroepithelium which has pinched off from the anterior neural keel and will form the optic cup.
TAO:0000050
optic vesicles
zebrafish_anatomy
ZFA:0000050
optic vesicle
Portion of tissue that is comprised of neuroepithelium which has pinched off from the anterior neural keel and will form the optic cup.
GOC:mh
ORCiD:0000-0001-9114-8737
optic vesicles
Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)
TAO:0000051
otocyst
ov
zebrafish_anatomy
otic capsule
ZFA:0000051
otic vesicle
Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
Actinotrichium which is part of the dorsal fin fold.
TAO:0000052
dorsal actinotrichia
zebrafish_anatomy
ZFA:0000052
dorsal actinotrichium
Actinotrichium which is part of the dorsal fin fold.
GOC:cvs
ORCiD:0000-0002-2244-7917
dorsal actinotrichia
Embryonic structure part of the mesoderm fated to become segmental plate.
TAO:0000053
presumptive segmental plates
zebrafish_anatomy
ZFA:0000053
presumptive segmental plate
Embryonic structure part of the mesoderm fated to become segmental plate.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
presumptive segmental plates
Serous membrane that surrounds the heart.
TAO:0000054
pericardial sac
zebrafish_anatomy
ZFA:0000054
pericardium
Serous membrane that surrounds the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
true
Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills.
TAO:0000056
zebrafish_anatomy
ZFA:0000056
pharynx
Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills.
ZFIN:ZDB-PUB-961014-576
true
The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period.
TAO:0000058
pillow
zebrafish_anatomy
ZFA:0000058
polster
The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
pillow
ZFIN:ZDB-PUB-961014-576
TAO:0000059
POC
post optic commissure
post-optic commissure
zebrafish_anatomy
ZFA:0000059
postoptic commissure
Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region.
TAO:0000060
zebrafish_anatomy
ZFA:0000060
prechordal plate
Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region.
ZFIN:ZDB-PUB-961014-576
true
Embryonic structure that gives rise to the forebrain.
TAO:0000062
presumptive prosencephalon
zebrafish_anatomy
ZFA:0000062
presumptive forebrain
Embryonic structure that gives rise to the forebrain.
GOC:mh
ORCiD:0000-0001-9114-8737
Region of the gastrula which gives rise to the neural plate.
ZFA:0000061
TAO:0000063
presumptive central nervous system
prospective neuroectoderm
prospective vegetal ectoderm
zebrafish_anatomy
neurectoderm
ZFA:0000063
presumptive neural plate
Region of the gastrula which gives rise to the neural plate.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium.
TAO:0000064
outer layer optic cup
presumptive pigmented epithelia
zebrafish_anatomy
ZFA:0000064
presumptive retinal pigmented epithelium
Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium.
GOC:mh
ORCiD:0000-0001-9114-8737
presumptive pigmented epithelia
true
An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.
TAO:0000066
zebrafish_anatomy
anus
ZFA:0000066
proctodeum
An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.
GOC:mh
ORCiD:0000-0001-9114-8737
Intermediate mesoderm that is located beneath the anterior somites and gives rise to the pronephros and pronephric duct.
TAO:0000067
pronephric primordium
zebrafish_anatomy
ZFA:0000067
pronephric mesoderm
Intermediate mesoderm that is located beneath the anterior somites and gives rise to the pronephros and pronephric duct.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000606-4
pronephric primordium
ZFIN:ZDB-PUB-000606-4
Cluster of cells in the neural plate that have the potential to become neuroblast.
TAO:0000068
proneural clusters
zebrafish_anatomy
ZFA:0000068
proneural cluster
Cluster of cells in the neural plate that have the potential to become neuroblast.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-990921-1
proneural clusters
Hindbrain segment or neuromere posterior to rhombomere 5
TAO:0000069
r6
zebrafish_anatomy
ZFA:0000069
rhombomere 6
Hindbrain segment or neuromere posterior to rhombomere 5
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
TAO:0000070
zebrafish_anatomy
ZFA:0000070
Consider post-composing term ZFA:0009053 sensory neuron with GO:0030424 axon
sensory axons peripheral
true
Embryonic structure that is a local accumulation of cells along the germ ring. The shield marks the dorsal side of the embryo.
TAO:0000071
Spemann Mangold organizer
Spemann's organizer
dorsal organizer
organizer
zebrafish_anatomy
ZFA:0000071
shield
Embryonic structure that is a local accumulation of cells along the germ ring. The shield marks the dorsal side of the embryo.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
Anteriormost undifferentiated mesodermal component of early trunk segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000072
zebrafish_anatomy
ZFA:0000072
somite 1
Anteriormost undifferentiated mesodermal component of early trunk segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 5 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000073
zebrafish_anatomy
ZFA:0000073
somite 5
Undifferentiated mesodermal component of early trunk segment 5 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 26 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000074
zebrafish_anatomy
ZFA:0000074
somite 26
Undifferentiated mesodermal component of early tail segment 26 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFA:0001664
TAO:0000075
medulla spinalis
zebrafish_anatomy
spinal cord structure
ZFA:0000075
spinal cord
medulla spinalis
ZFIN:ZDB-PUB-961014-1280
The swim bladder is a double-chambered organ located in the coelom and used to maintain buoyancy and may function as an acoustic resonator. The zebrafish does not appear to have a gas gland, but it is not yet clear if there are gas producing cells distributed more widely.
TAO:0000076
gas bladder
zebrafish_anatomy
ZFA:0000076
swim bladder
The swim bladder is a double-chambered organ located in the coelom and used to maintain buoyancy and may function as an acoustic resonator. The zebrafish does not appear to have a gas gland, but it is not yet clear if there are gas producing cells distributed more widely.
ZFIN:ZDB-PUB-060306-11
TAO:0000077
tailbud
zebrafish_anatomy
tail bud mesenchyme
ZFA:0000077
tail bud
Actinotrichium which is part of the ventral fin fold.
TAO:0000078
ventral actinotrichia
zebrafish_anatomy
ZFA:0000078
ventral actinotrichium
Actinotrichium which is part of the ventral fin fold.
GOC:mh
ORCiD:0000-0001-9114-8737
ventral actinotrichia
The anterior and dorsal forebrain neuromere. In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. From Neuroanatomy of the Zebrafish Brain.
TAO:0000079
zebrafish_anatomy
ZFA:0000079
telencephalon
The anterior and dorsal forebrain neuromere. In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Cranial neural crest which gives rise to the trigeminal ganglion.
TAO:0000080
zebrafish_anatomy
ZFA:0000080
trigeminal neural crest
Cranial neural crest which gives rise to the trigeminal ganglion.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0000081
zebrafish_anatomy
ZFA:0000081
trunk mesenchyme
Vessels that carry blood to the heart.
TAO:0000082
zebrafish_anatomy
venous system
ZFA:0000082
vein
Vessels that carry blood to the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0000083
zebrafish_anatomy
ZFA:0000083
ventral mesoderm
Giant syncytial uncleaved cell containing nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules.
ZFA:0009197
CL:0000428
TAO:0000084
yolk cell
zebrafish_anatomy
ZFA:0000084
yolk
Giant syncytial uncleaved cell containing nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
Apical ectodermal ridge that is part of the pectoral fin bud.
ZFA:0000736
TAO:0000085
TAO:0000736
AER pectoral fin
apical ectodermal ridge pectoral fin
apical ectodermal ridge pectoral fin buds
apical ectodermal ridge pectoral fins
apical fold pectoral fin
zebrafish_anatomy
ZFA:0000085
apical ectodermal ridge pectoral fin bud
Apical ectodermal ridge that is part of the pectoral fin bud.
GOC:mh
ORCiD:0000-0001-9114-8737
apical ectodermal ridge pectoral fin buds
Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm.
TAO:0000086
enveloping layer
zebrafish_anatomy
ZFA:0000086
EVL
Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm.
ZFIN:ZDB-PUB-961014-576
enveloping layer
ZFIN:ZDB-PUB-961014-576
true
Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm.
TAO:0000088
YSL
periblast
zebrafish_anatomy
yolk sac
ZFA:0000088
yolk syncytial layer
Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm.
ZFIN:ZDB-PUB-961014-576
YSL
ZFIN:ZDB-PUB-961014-576
periblast
ZFIN:ZDB-PUB-961014-576
Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine.
TAO:0000089
fin fold actinotrichia
median fin fold actinotrichium
zebrafish_anatomy
ZFA:0000089
fin fold actinotrichium
Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine.
http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm
fin fold actinotrichia
Apical ectodermal ridge that is part of the dorsal fin.
TAO:0000090
zebrafish_anatomy
ZFA:0000090
apical ectodermal ridge dorsal fin
Apical ectodermal ridge that is part of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Notochord rudiment.
ZFA:0001219
TAO:0000091
TAO:0001219
chorda mesoderm
chordamesoderm
presumptive notochord
zebrafish_anatomy
ZFA:0000091
axial chorda mesoderm
Notochord rudiment.
ZFIN:ZDB-PUB-961014-576
Organism subdivision running along the rostral-caudal axis of the early embryo.
TAO:0000092
midline
zebrafish_anatomy
ZFA:0000092
axis
Organism subdivision running along the rostral-caudal axis of the early embryo.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula.
TAO:0000093
blastomeres
zebrafish_anatomy
ZFA:0000093
blastomere
Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula.
ZFIN:ZDB-PUB-961014-576
blastomeres
Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension.
TAO:0000094
blood islands
posterior ICM
zebrafish_anatomy
caudal hematopoietic tissue
posterior blood island
ZFA:0000094
blood island
Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension.
ZFIN:ZDB-PUB-961014-576
blood islands
Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention.
TAO:0000095
branchial arch skeleton
gill arches 1-5 skeleton
zebrafish_anatomy
ZFA:0000095
pharyngeal arch 3-7 skeleton
Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention.
ZFIN:ZDB-PUB-961014-576
Blood vasculature comprised of the cardinal veins.
TAO:0000096
zebrafish_anatomy
ZFA:0000096
cardinal system
Blood vasculature comprised of the cardinal veins.
GOC:cvs
ORCiD:0000-0002-2244-7917
Artery originating at the junction of the first two aortic arches and supplying the anterior brain.
TAO:0000097
zebrafish_anatomy
ZFA:0000097
carotid artery
Artery originating at the junction of the first two aortic arches and supplying the anterior brain.
ZFIN:ZDB-PUB-961014-576
Anatomical cluster which consists of rapidly dividing cells.
TAO:0000098
zebrafish_anatomy
cell cycle
cell division
proliferation
ZFA:0000098
proliferative region
Anatomical cluster which consists of rapidly dividing cells.
GOC:mh
ORCiD:0000-0001-9114-8737
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the brain.
TAO:0000099
zebrafish_anatomy
ZFA:0000099
brain vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the brain.
GOC:cvs
ORCiD:0000-0002-2244-7917
Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here.
TAO:0000100
zebrafish_anatomy
ZFA:0000100
cerebellum
Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here.
ISBN:3764351209
ZFIN:ZDB-PUB-961014-1280
The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis).
TAO:0000101
zebrafish_anatomy
ZFA:0000101
diencephalon
The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis).
ZFIN:ZDB-PUB-961014-576
Region of the median fin fold that develops into the dorsal fin.
TAO:0000102
zebrafish_anatomy
ZFA:0000102
dorsal fin fold
Region of the median fin fold that develops into the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFS:0000002
ZFS:0000003
ZFS:0000004
ZFS:0000005
ZFS:0000006
ZFS:0000007
ZFS:0000008
ZFS:0000009
ZFS:0000010
ZFS:0000011
ZFS:0000012
ZFS:0000013
ZFS:0000014
ZFS:0000015
ZFS:0000016
ZFS:0000017
ZFS:0000018
ZFS:0000019
ZFS:0000020
ZFS:0000021
ZFS:0000022
ZFS:0000023
ZFS:0000024
ZFS:0000025
ZFS:0000026
ZFS:0000027
ZFS:0000028
ZFS:0000029
ZFS:0000030
ZFS:0000031
ZFS:0000032
zebrafish_anatomy
ZFA:0000103
embryo
true
zebrafish_anatomy
ZFA:0000104
lateral cells
true
A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present.
TAO:0000105
zebrafish_anatomy
ZFA:0000105
epidermis
A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present.
ZFIN:ZDB-PUB-040726-12
The posterior elongated region of the yolk cell that forms during the segmentation period.
TAO:0000106
yolk extension
zebrafish_anatomy
ZFA:0000106
extension
The posterior elongated region of the yolk cell that forms during the segmentation period.
ZFIN:ZDB-PUB-961014-576
yolk extension
ZFIN:ZDB-PUB-961014-576
Cavitated compound organ that consists of the neural retina, lens, cornea and iris and is the sensory apparatus of the visual system.
TAO:0000107
eyes
zebrafish_anatomy
ZFA:0000107
eye
Cavitated compound organ that consists of the neural retina, lens, cornea and iris and is the sensory apparatus of the visual system.
GOC:mh
ORCiD:0000-0001-9114-8737
eyes
Surface structure involved in locomotion.
TAO:0000108
fins
zebrafish_anatomy
ZFA:0000108
fin
Surface structure involved in locomotion.
TAO:WD
fins
The most anterior region the brain including both the telencephalon and diencephalon.
TAO:0000109
prosencephalon
zebrafish_anatomy
ZFA:0000109
forebrain
The most anterior region the brain including both the telencephalon and diencephalon.
ZFIN:ZDB-PUB-961014-576
Fluid-filled brain cavity. Most posterior brain ventricle.
TAO:0000110
4th ventricle
hindbrain ventricle
rhombencephalic ventricle
rhombencephalic vesicle
ventricle IV
ventriculus rhombencephali
zebrafish_anatomy
ZFA:0000110
fourth ventricle
Fluid-filled brain cavity. Most posterior brain ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
ventriculus rhombencephali
ZFIN:ZDB-PUB-961014-1280
Embryonic structure that forms as a thickened annulus at the blastoderm rim. The germ ring is thickened because it is the involuting margin of the blastoderm.
TAO:0000111
zebrafish_anatomy
ZFA:0000111
germ ring
Embryonic structure that forms as a thickened annulus at the blastoderm rim. The germ ring is thickened because it is the involuting margin of the blastoderm.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The alimentary or digestive tract, and associated organs.
TAO:0000112
alimentary canal
enteric tract
gut tube
zebrafish_anatomy
ZFA:0000112
gut
The alimentary or digestive tract, and associated organs.
GOC:mh
ORCiD:0000-0001-9114-8737
Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head.
TAO:0000113
zebrafish_anatomy
ZFA:0000113
head mesenchyme
Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head.
http://www.Biology-Text.com
Blood pumping organ composed of four components: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus.
TAO:0000114
zebrafish_anatomy
ZFA:0000114
heart
Blood pumping organ composed of four components: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus.
GOC:cvs
ORCiD:0000-0002-2244-7917
The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5 hpf and 22 hpf, and eventually telescope out into the primitive heart tube at 24hpf.
TAO:0000115
heart cone
rudimentary heart
zebrafish_anatomy
ZFA:0000115
heart rudiment
The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5 hpf and 22 hpf, and eventually telescope out into the primitive heart tube at 24hpf.
ZFIN:ZDB-PUB-010219-2
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena.
TAO:0000116
maculae lagena
zebrafish_anatomy
ZFA:0000116
macula lagena
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-7
ZFIN:ZDB-PUB-020403-4
maculae lagena
The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm.
TAO:0000117
mesendoderm
zebrafish_anatomy
ZFA:0000117
hypoblast
The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm.
ZFIN:ZDB-PUB-961014-576
mesendoderm
ZFIN:ZDB-PUB-961014-576
A compound organ which is an endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non-neuroectodermal origin.
TAO:0000118
pituitary
zebrafish_anatomy
ZFA:0000118
hypophysis
A compound organ which is an endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non-neuroectodermal origin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Retinal layer that contains the interneurons, the horizontal, bipolar and amacrine cells.
TAO:0000119
inner nuclear layer
intermediate cell layer
zebrafish_anatomy
ZFA:0000119
retinal inner nuclear layer
Retinal layer that contains the interneurons, the horizontal, bipolar and amacrine cells.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-970602-3
inner nuclear layer
Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line.
TAO:0000120
lateral line ganglia
llg
zebrafish_anatomy
ZFA:0000120
lateral line ganglion
Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line.
GOC:ymb
ORCiD:0000-0002-9900-7880
lateral line ganglia
TAO:0000121
LPM
lateral plate
zebrafish_anatomy
ZFA:0000121
lateral plate mesoderm
Ectodermal primordium of the lens of the eye.
TAO:0000122
lens placodes
zebrafish_anatomy
ZFA:0000122
lens placode
Ectodermal primordium of the lens of the eye.
ZFIN:ZDB-PUB-961014-576
lens placodes
Solid compound organ with three lobes that has many functions including bile production, blood detoxification, the production of critical plasma proteins and clotting factors, complement proteins and the storage of many substances, such as lipids, amino acids, iron, and glycogen. Female fish produce vitellogenins in the liver.
TAO:0000123
zebrafish_anatomy
ZFA:0000123
liver
Solid compound organ with three lobes that has many functions including bile production, blood detoxification, the production of critical plasma proteins and clotting factors, complement proteins and the storage of many substances, such as lipids, amino acids, iron, and glycogen. Female fish produce vitellogenins in the liver.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-030115-26
ZFIN:ZDB-PUB-090407-7
ZFIN:ZDB-PUB-100730-19
Embryonic primordium that develops into the liver.
TAO:0000124
liver bud
zebrafish_anatomy
ZFA:0000124
liver primordium
Embryonic primordium that develops into the liver.
GOC:cvs
ORCiD:0000-0002-2244-7917
Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000125
neuromast mandibular
neuromasts mandibular
zebrafish_anatomy
ZFA:0000125
mandibular lateral line neuromast
Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts mandibular
Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999).
TAO:0000126
autocentrum
zebrafish_anatomy
ZFA:0000126
centrum
Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999).
GOC:mh
ORCiD:0000-0001-9114-8737
zebrafish_anatomy
ZFA:0000127
mesenchyme condensations
true
The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally.
TAO:0000128
mesencephalon
zebrafish_anatomy
ZFA:0000128
midbrain
The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally.
ZFIN:ZDB-PUB-961014-576
mesencephalon
ZFIN:ZDB-PUB-961014-576
true
TAO:0000130
nasal canal
nasal cavity
nasal pit
olfactory cavity
zebrafish_anatomy
ZFA:0000130
olfactory pit
An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section.
TAO:0000131
zebrafish_anatomy
presumptive central nervous system
ZFA:0000131
neural keel
An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section.
ZFIN:ZDB-PUB-961014-576
Portion of tissue that is the earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium.
TAO:0000132
zebrafish_anatomy
presumptive central nervous system
ZFA:0000132
neural plate
Portion of tissue that is the earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium.
ZFIN:ZDB-PUB-961014-576
An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube.
TAO:0000133
zebrafish_anatomy
presumptive central nervous system
ZFA:0000133
neural rod
An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube.
ZFIN:ZDB-PUB-961014-576
true
Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms.
TAO:0000135
notocord
zebrafish_anatomy
ZFA:0000135
notochord
Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms.
ZFIN:ZDB-PUB-961014-576
Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000136
neuromast otic
neuromasts otic
zebrafish_anatomy
ZFA:0000136
otic lateral line neuromast
Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts otic
Portion of tissue that provides a pathway for axon migration from the retina. The cells of the optic stalk later differentiate into glial cells of the optic nerve.
TAO:0000137
optic stalks
zebrafish_anatomy
ZFA:0000137
optic stalk
Portion of tissue that provides a pathway for axon migration from the retina. The cells of the optic stalk later differentiate into glial cells of the optic nerve.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-030210-6
ZFIN:ZDB-PUB-101201-28
optic stalks
Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the mid-segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)
TAO:0000138
zebrafish_anatomy
ZFA:0000138
otic placode
Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the mid-segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
true
The pancreas is an organ composed of endocrine and exocrine glandular tissue that produce hormones and digestive enzymes. Unlike in other studied vertebrates the pancreas in zebrafish develops from two buds, one anterior and one posterior. In adult fish the main pancreas is located on the right side attached to the lateral aspect of the intestine by the pancreatic duct. Typically, one large islet and 3-6 smaller islets occupy the main pancreas. The tail of the pancreas is embedded with single beta cells or clusters of small islets and extends caudally along the right side of the intestine.
TAO:0000140
zebrafish_anatomy
ZFA:0000140
pancreas
The pancreas is an organ composed of endocrine and exocrine glandular tissue that produce hormones and digestive enzymes. Unlike in other studied vertebrates the pancreas in zebrafish develops from two buds, one anterior and one posterior. In adult fish the main pancreas is located on the right side attached to the lateral aspect of the intestine by the pancreatic duct. Typically, one large islet and 3-6 smaller islets occupy the main pancreas. The tail of the pancreas is embedded with single beta cells or clusters of small islets and extends caudally along the right side of the intestine.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-030902-16
ZFIN:ZDB-PUB-090616-17
Fin bud that develops into the pectoral fin.
TAO:0000141
pectoral fin buds
zebrafish_anatomy
ZFA:0000141
pectoral fin bud
Fin bud that develops into the pectoral fin.
GOC:mh
ORCiD:0000-0001-9114-8737
pectoral fin buds
Nervous structures including ganglia outside of the central nervous system.
TAO:0000142
pns
zebrafish_anatomy
ZFA:0000142
peripheral nervous system
Nervous structures including ganglia outside of the central nervous system.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
The layer within the retina where the photoreceptor cell receptor segments reside. This layer is closest to the sclera.
TAO:0000143
retinal photoreceptor layers
zebrafish_anatomy
ZFA:0000143
retinal photoreceptor layer
The layer within the retina where the photoreceptor cell receptor segments reside. This layer is closest to the sclera.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-677
retinal photoreceptor layers
A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup.
TAO:0000144
PRE
RPE
pigmented epithelium
pigmented retina
pigmented retinal epithelium
zebrafish_anatomy
ZFA:0000144
retinal pigmented epithelium
A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
true
Embryonic structure that gives rise to the brain.
TAO:0000146
brain rudiment
zebrafish_anatomy
ZFA:0000146
presumptive brain
Embryonic structure that gives rise to the brain.
GOC:mh
ORCiD:0000-0001-9114-8737
true
Embryonic structure that gives rise to the midbrain.
TAO:0000148
presumptive mesencephalon
zebrafish_anatomy
ZFA:0000148
presumptive midbrain
Embryonic structure that gives rise to the midbrain.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure that arises from the heart rudiment and will become the heart tube.
TAO:0000149
zebrafish_anatomy
ZFA:0000149
primitive heart tube
Multi-tissue structure that arises from the heart rudiment and will become the heart tube.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010219-2
Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Wingert et al. have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons.
TAO:0000150
pronephric ducts
zebrafish_anatomy
ZFA:0000150
pronephric duct
Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Wingert et al. have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-071029-9
ZFIN:ZDB-PUB-961014-576
pronephric ducts
The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.
TAO:0000151
embryonic kidney
pronephric nephron
zebrafish_anatomy
ZFA:0000151
pronephros
The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.
GOC:cvs
GOC:mh
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
embryonic kidney
ZFIN:ZDB-PUB-961014-576
Multi-tissue structure that contains the retinal neural layer and the retinal pigmented epithelium, and develops from the optic cup.
TAO:0000152
retinas
zebrafish_anatomy
ZFA:0000152
retina
Multi-tissue structure that contains the retinal neural layer and the retinal pigmented epithelium, and develops from the optic cup.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
retinas
Posteriormost hindbrain segment or neuromere.
TAO:0000153
r8
zebrafish_anatomy
ZFA:0000153
rhombomere 8
Posteriormost hindbrain segment or neuromere.
ZFIN:ZDB-PUB-961014-576
Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract.
TAO:0000154
inflow tract
zebrafish_anatomy
ZFA:0000154
sinus venosus
Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes.
TAO:0000155
zebrafish_anatomy
somitic mesoderm
ZFA:0000155
somite
Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk or tail segment 20 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000156
zebrafish_anatomy
ZFA:0000156
somite 20
Undifferentiated mesodermal component of early trunk or tail segment 20 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Posteriormost undifferentiated mesodermal component of early tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000157
zebrafish_anatomy
ZFA:0000157
somite 30
Posteriormost undifferentiated mesodermal component of early tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Develops from the fused preural centrum 1+ ural centrum 1.
TAO:0000158
compound centrum
last vertebra
ultimate vertebra
zebrafish_anatomy
ZFA:0000158
urostyle
This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Develops from the fused preural centrum 1+ ural centrum 1.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-011008-1
TAO:0000159
cerebral aqueduct
medial tectal ventricle
mesencephalic ventricle
mesencephalic vesicle
midbrain ventricle
ventriculus mesencephali
zebrafish_anatomy
ZFA:0000159
tectal ventricle
ventriculus mesencephali
ZFIN:ZDB-PUB-961014-1280
Multi-tissue structure that is the ventral part of the midbrain and develops from the basal plate. The tegmentum is bordered rostrally by the synencephalon, dorsal thalamus and posterior tuberculum, ventrally by the hypothalamus, and dorsolaterally by the torus semicircularis; caudally the tegmentum is continuous with the medulla oblongata.
ZFA:0001354
TAO:0000160
mesencephalic tegmentum
midbrain tegmentum
zebrafish_anatomy
ZFA:0000160
tegmentum
Multi-tissue structure that is the ventral part of the midbrain and develops from the basal plate. The tegmentum is bordered rostrally by the synencephalon, dorsal thalamus and posterior tuberculum, ventrally by the hypothalamus, and dorsolaterally by the torus semicircularis; caudally the tegmentum is continuous with the medulla oblongata.
GOC:mh
ORCiD:0000-0001-9114-8737
Fluid-filled brain cavity.
TAO:0000161
3rd ventricle
diencephalic ventricle
diencephalic vesicle
ventriculus diencephali
zebrafish_anatomy
ZFA:0000161
third ventricle
Fluid-filled brain cavity.
ZFIN:ZDB-PUB-961014-576
ventriculus diencephali
ZFIN:ZDB-PUB-961014-1280
The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period.
TAO:0000162
trigeminal placodes
zebrafish_anatomy
ZFA:0000162
trigeminal placode
The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
trigeminal placodes
System that removes and collects metabolic waste from the blood while maintaining ion homeostasis.
TAO:0000163
zebrafish_anatomy
urinary system
ZFA:0000163
renal system
System that removes and collects metabolic waste from the blood while maintaining ion homeostasis.
ZFIN:ZDB-PUB-071029-9
TAO:0000164
zebrafish_anatomy
ZFA:0000164
ventral mesenchyme
Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone.
TAO:0000165
inferior lobe of hypothalamus
inferior lobes
lateral lobe of hypothalamus
lobus inferior hypothalami
zebrafish_anatomy
ZFA:0000165
inferior lobe
Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
inferior lobe of hypothalamus
ZFIN:ZDB-PUB-961014-1280
inferior lobes
lobus inferior hypothalami
ZFIN:ZDB-PUB-961014-1280
Patch of thickened, pseudostratified epithelium that is associated with the lateral semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The lateral crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
ZFA:0000378
TAO:0000166
lateral crista ampullaris
lateral cristae
lateral semicircular canal sensory patch
lateral semicircular canal sensory patches
lc
zebrafish_anatomy
medial crista
ZFA:0000166
lateral crista
Patch of thickened, pseudostratified epithelium that is associated with the lateral semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The lateral crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
lateral cristae
lateral semicircular canal sensory patches
medial crista
ZFIN:ZDB-PUB-051116-3
Median fin skeleton that is located posterior to the anus.
TAO:0000167
zebrafish_anatomy
ZFA:0000167
anal fin skeleton
Median fin skeleton that is located posterior to the anus.
TAO:curator
Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
TAO:0000168
am
anterior sensory patch
zebrafish_anatomy
ZFA:0000168
anterior macula
Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
http://zfin.org/zf_info/anatomy/dict/sens/sens.html
ZFA:0001410
zebrafish_anatomy
ZFA:0000169
antorbital
true
Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials.
TAO:0000170
basibranchials
zebrafish_anatomy
ZFA:0000170
basibranchial
Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials.
GOC:ymb
ORCiD:0000-0002-9900-7880
basibranchials
zebrafish_anatomy
ZFA:0000171
A basisphenoid is absent in Danio rerio; its absence is a shared derived feature of all ostariophysan fishes (Fink and Fink, '81). from ZDB-PUB-961014-192
basisphenoid
true
Muscle that is part of pharyngeal arches 3-7 which are also known as the branchial arches.
TAO:0000172
branchial muscles
zebrafish_anatomy
ZFA:0000172
branchial muscle
Muscle that is part of pharyngeal arches 3-7 which are also known as the branchial arches.
GOC:CVS
ORCiD:0000-0002-2244-7917
branchial muscles
Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches.
TAO:0000173
cardiac outflow tract
outflow tract
truncus
zebrafish_anatomy
ZFA:0000173
bulbus arteriosus
Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches.
ZFIN:ZDB-PUB-001026-2
Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex.
TAO:0000174
caudal cerebellar tract
caudal cerebellar tracts
cerebellovestibular tracts
zebrafish_anatomy
ZFA:0000174
cerebellovestibular tract
Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-090422-9
caudal cerebellar tracts
cerebellovestibular tracts
Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines.
TAO:0000175
caudal lateral line nerve
zebrafish_anatomy
ZFA:0000175
posterior lateral line nerve
Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines.
ZFIN:ZDB-PUB-000523-3
ZFIN:ZDB-PUB-961014-763
Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain.
TAO:0002204
area ventralis telencephali, nucleus lateralis
zebrafish_anatomy
ZFA:0000176
lateral nucleus of ventral telencephalon
Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000177
caudal obliques
zebrafish_anatomy
ZFA:0000177
caudal oblique
caudal obliques
Portion of the fish's body that is posterior to the vent and anterior to the caudal fin.
TAO:0000178
zebrafish_anatomy
ZFA:0000178
caudal peduncle
Portion of the fish's body that is posterior to the vent and anterior to the caudal fin.
GOC:mh
ORCiD:0000-0001-9114-8737
Cranial nerve root which is part of the abducens nerve (CN-VI) and is located at the level of the intermediate reticular formation. Fuses with the rostral root of the abducens nerve and courses rostrally once outside the brain stem. From Neuroanatomy of the Zebrafish Brain.
TAO:0000179
radix caudalis nervi abducentis
zebrafish_anatomy
ZFA:0000179
caudal root of abducens nerve
Cranial nerve root which is part of the abducens nerve (CN-VI) and is located at the level of the intermediate reticular formation. Fuses with the rostral root of the abducens nerve and courses rostrally once outside the brain stem. From Neuroanatomy of the Zebrafish Brain.
ISBN:3764351209
Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterior cardinal vein in the posterior trunk.
TAO:0000180
CV
zebrafish_anatomy
ZFA:0000180
caudal vein
Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterior cardinal vein in the posterior trunk.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
Telencephalic nucleus which is the most caudally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000181
Dp
area dorsalis telencephali, zona posterior
caudal zone of D
posterior zone of dorsal telencephalic area
zebrafish_anatomy
ZFA:0000181
caudal zone of dorsal telencephalon
Telencephalic nucleus which is the most caudally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Dp
ZFIN:ZDB-PUB-150226-6
Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, ventral to the dorsal caudal thalamic nucleus.
TAO:0000182
central posterior thalamic nucleus
nucleus centralis posterior thalami
zebrafish_anatomy
ZFA:0000182
central caudal thalamic nucleus
Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, ventral to the dorsal caudal thalamic nucleus.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure that is the central part of the pretectum.
TAO:0000183
zebrafish_anatomy
ZFA:0000183
central pretectum
Multi-tissue structure that is the central part of the pretectum.
GOC:mh
ORCiD:0000-0001-9114-8737
Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis.
TAO:0000184
cleithra
zebrafish_anatomy
ZFA:0000184
cleithrum
Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
cleithra
Anterior commissure which abuts the preoptic region dorsally. From Neuroanatomy of the Zebrafish Brain.
TAO:0000185
commissura anterior, pars ventralis
zebrafish_anatomy
ZFA:0000185
commissura rostral, pars ventralis
Anterior commissure which abuts the preoptic region dorsally. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus.
TAO:0000186
duct of Cuvier
zebrafish_anatomy
ZFA:0000186
common cardinal vein
Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-576
true
Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain.
TAO:0000188
cerebellar corpus
corpus cerebelli granular layer
corpus cerebellum
zebrafish_anatomy
ZFA:0000188
corpus cerebelli
Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
corpus cerebelli granular layer
ZFIN:ZDB-PUB-961014-1280
corpus cerebellum
Anatomical cluster of skeletal elements that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system.
TAO:0000189
zebrafish_anatomy
cranial vault
ZFA:0000189
otic region
Anatomical cluster of skeletal elements that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system.
GOC:ymb
ORCiD:0000-0002-9900-7880
Structures containing a collection of nerve cell bodies.
TAO:0000190
ganglia
zebrafish_anatomy
ZFA:0000190
ganglion
Structures containing a collection of nerve cell bodies.
GOC:mh
ORCiD:0000-0001-9114-8737
ganglia
Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans.
TAO:0000191
dentary bone
zebrafish_anatomy
ZFA:0000191
dentary
Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans.
GOC:ymb
ORCiD:0000-0002-9900-7880
The bundle of the sensory root of the trigeminal nerve that descends in the medulla oblongata providing somatosensory input to the nucleus of the descending trigeminal root and to the medial funicular nucleus.
TAO:0000192
radix descendens nervi trigemini
zebrafish_anatomy
ZFA:0000192
descending trigeminal root
The bundle of the sensory root of the trigeminal nerve that descends in the medulla oblongata providing somatosensory input to the nucleus of the descending trigeminal root and to the medial funicular nucleus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1280
Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain.
TAO:0000193
DIL
diffuse nuclei
zebrafish_anatomy
ZFA:0000193
diffuse nucleus inferior lobe
Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
diffuse nuclei
Diencephalic nucleus that is part of the central pretectum and is ventral to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000194
nucleus opticus accessorius dorsalis
zebrafish_anatomy
ZFA:0000194
dorsal accessory optic nucleus
Diencephalic nucleus that is part of the central pretectum and is ventral to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Dorsal fin muscle that moves individual rays the dorsal fin into a lowered position. The dorsal depressors extend from either the right or left base of a dorsal fin ray to the posterior edge of a proximal pterygophore in the median septum. Antagonistic to dorsal erector muscle. There is one dorsal depressor for each dorsal fin lepidotrichium.
TAO:0000195
depressor dorsalis
dorsal depressors
zebrafish_anatomy
ZFA:0000195
dorsal depressor
Dorsal fin muscle that moves individual rays the dorsal fin into a lowered position. The dorsal depressors extend from either the right or left base of a dorsal fin ray to the posterior edge of a proximal pterygophore in the median septum. Antagonistic to dorsal erector muscle. There is one dorsal depressor for each dorsal fin lepidotrichium.
GOC:cvs
ORCiD:0000-0002-2244-7917
dorsal depressors
The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm).
TAO:0000196
dorsal hypohyals
zebrafish_anatomy
ZFA:0000196
dorsal hypohyal bone
The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm).
GOC:mh
ORCiD:0000-0001-9114-8737
dorsal hypohyals
Habenular nucleus where the efferent projections innervate the interpeduncular nucleus. The dorsal habenula is structurally homologous to the mammalian medial habenula.
TAO:0000197
dorsal habenular nuclei
dorsal nuclei
zebrafish_anatomy
ZFA:0000197
dorsal habenular nucleus
Habenular nucleus where the efferent projections innervate the interpeduncular nucleus. The dorsal habenula is structurally homologous to the mammalian medial habenula.
ZFIN:ZDB-PUB-100202-7
dorsal habenular nuclei
dorsal nuclei
true
Diencephalic nucleus which is part of the dorsal hypothalamic zone and is located periventricularly. From Neuroanatomy of the Zebrafish Brain.
TAO:0000199
zebrafish_anatomy
ZFA:0000199
dorsal periventricular hypothalamus
Diencephalic nucleus which is part of the dorsal hypothalamic zone and is located periventricularly. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves.
TAO:0000200
DRG
dorsal root ganglia
zebrafish_anatomy
ZFA:0000200
dorsal root ganglion
Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves.
GOC:mh
ORCiD:0000-0001-9114-8737
dorsal root ganglia
TAO:0000201
zebrafish_anatomy
ZFA:0000201
dorsal transverse
Artery that carries blood leaving the gill. This is on the side of the aortic arch proximal to the lateral dorsal aorta.
TAO:0000202
EBA
zebrafish_anatomy
ZFA:0000202
efferent branchial artery
Artery that carries blood leaving the gill. This is on the side of the aortic arch proximal to the lateral dorsal aorta.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
zebrafish_anatomy
ZFA:0000203
Epicentrals are not present in D. rerio.ZDB-PUB-031103-13
epicentrals
true
Esophagus part of the gut that develops from endodermal precursors at the rostral end of the digestive tract. The esophagus develops independently from the intestine.
TAO:0000204
oesophagus
zebrafish_anatomy
ZFA:0000204
esophagus
Esophagus part of the gut that develops from endodermal precursors at the rostral end of the digestive tract. The esophagus develops independently from the intestine.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-030312-8
Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the ventral tip of the caudal fin.
TAO:0000205
lateralis superficialis ventralis
zebrafish_anatomy
LSV
external ventral flexor
ZFA:0000205
external lateral ventral muscle
Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the ventral tip of the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
TAO:0000206
facial motor nucleus
motor nucleus VII
nVII
nucleus motorius nervi facialis
zebrafish_anatomy
ZFA:0000206
facial nerve motor nucleus
Musculature part of fin.
TAO:0000207
zebrafish_anatomy
ZFA:0000207
fin musculature
Musculature part of fin.
GOC:mh
ORCiD:0000-0001-9114-8737
The compound organ that stores bile.
TAO:0000208
zebrafish_anatomy
ZFA:0000208
gall bladder
The compound organ that stores bile.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000209
lateral preglomerular nuclei
zebrafish_anatomy
ZFA:0000209
lateral preglomerular nucleus
Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
lateral preglomerular nuclei
Portion of tissue that is the caudal gigantocellular portion of the magnocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000210
nucleus praeopticus magnocellularis, pars gigantocellularis
zebrafish_anatomy
ZFA:0000210
gigantocellular part of magnocellular preoptic nucleus
Portion of tissue that is the caudal gigantocellular portion of the magnocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion.
TAO:0000211
gill lamellae
zebrafish_anatomy
ZFA:0000211
gill lamella
Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion.
GOC:cvs
ORCiD:0000-0002-2244-7917
http://www.briancoad.com/Dictionary/G.htm
gill lamellae
Brain structure which is paired and part of the vestibulolateralis lobe of the cerebellum and extends fibers into the cerebellar crest. From Neuroanatomy of the Zebrafish Brain.
ZFA:0000187
TAO:0000212
eminentia granularis
lateral granular eminence
zebrafish_anatomy
EG
ZFA:0000212
granular eminence
Brain structure which is paired and part of the vestibulolateralis lobe of the cerebellum and extends fibers into the cerebellar crest. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus.
TAO:0000213
habenulae
habenular nucleus
zebrafish_anatomy
ZFA:0000213
habenula
The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus.
GOC:mh
ORCiD:0000-0001-9114-8737
habenulae
ZFA:0000673
TAO:0000214
hypobranchial vessels
zebrafish_anatomy
ZFA:0000214
May be the same as hypobranchial artery and may need to be merged.
hypobranchial vessel
true
hypobranchial vessels
Hindbrain nucleus where climbing fibers originate. The neurons in the inferior olive are capable of prolonged oscillatory activity. The inferior olive is called a precerebellar nucleus since virtually all of the efferent axons terminate in the cerebellum.
TAO:0000215
zebrafish_anatomy
ZFA:0000215
inferior olive
Hindbrain nucleus where climbing fibers originate. The neurons in the inferior olive are capable of prolonged oscillatory activity. The inferior olive is called a precerebellar nucleus since virtually all of the efferent axons terminate in the cerebellum.
GOC:mh
ISBN:0471888893
ORCiD:0000-0001-9114-8737
TAO:0000216
zebrafish_anatomy
ZFA:0000216
This may need to be treated as a waypoint in the development of the various muscles or as a group of muscles.
infracarinalis
The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)
TAO:0000217
ear
zebrafish_anatomy
otic capsule
otocyst
ZFA:0000217
inner ear
The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
true
TAO:0000219
intermediate reticular formations
zebrafish_anatomy
ZFA:0000219
intermediate reticular formation
intermediate reticular formations
One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The lateral semicircular canal is associated with the lateral crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
ZFA:0000361
TAO:0000220
horizontal semicircular canal
lateral semicircular canals
lateral semicircular duct
zebrafish_anatomy
ZFA:0000220
lateral semicircular canal
One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The lateral semicircular canal is associated with the lateral crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
lateral semicircular canals
TAO:0000221
internal levators
zebrafish_anatomy
ZFA:0000221
internal levator
internal levators
Sensory trigeminal nucleus located in the most rostral position. It lies immediately caudal to the secondary gustatory nucleus.
TAO:0000222
isthmic primary nuclei
isthmic primary sensory trigeminal nucleus
zebrafish_anatomy
ZFA:0000222
isthmic primary nucleus
Sensory trigeminal nucleus located in the most rostral position. It lies immediately caudal to the secondary gustatory nucleus.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-1280
isthmic primary nuclei
isthmic primary sensory trigeminal nucleus
ZFIN:ZDB-PUB-961014-1280
Dermal bone that covers the region between the anterior margin of the eye and the upper jaw. Infraorbital 1 (the lachrymal) is the first and largest bone in the infraorbital series. Bears the anterior most part of the infraorbital canal.
TAO:0000223
lachrymal bone
lacrimal
lacrymal bone
zebrafish_anatomy
ZFA:0000223
infraorbital 1
Dermal bone that covers the region between the anterior margin of the eye and the upper jaw. Infraorbital 1 (the lachrymal) is the first and largest bone in the infraorbital series. Bears the anterior most part of the infraorbital canal.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFS:0000035
ZFS:0000036
ZFS:0000037
ZFS:0000038
ZFS:0000039
ZFS:0000040
ZFS:0000041
zebrafish_anatomy
ZFA:0000224
larva
true
Is an otic epithelium that will mature into the lateral crista.
TAO:0000225
lateral crista primordia
zebrafish_anatomy
ZFA:0000225
lateral crista primordium
Is an otic epithelium that will mature into the lateral crista.
GOC:ymb
ORCiD:0000-0002-9900-7880
lateral crista primordia
Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales.
TAO:0000226
lateral ethmoids
zebrafish_anatomy
ZFA:0000226
lateral ethmoid
Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales.
GOC:mh
ORCiD:0000-0001-9114-8737
lateral ethmoids
Diencephalic nucleus which is the lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain.
TAO:0000227
lateral hypothalamic nuclei
lateral tuberal nucleus
zebrafish_anatomy
arcuate nucleus
ZFA:0000227
lateral hypothalamic nucleus
Diencephalic nucleus which is the lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
lateral hypothalamic nuclei
Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts.
TAO:0000228
lateral line primordia
llp
zebrafish_anatomy
ZFA:0000228
lateral line primordium
Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts.
GOC:ymb
ORCiD:0000-0002-9900-7880
lateral line primordia
Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain.
TAO:0000229
tractus olfactorius lateralis
zebrafish_anatomy
ZFA:0000229
lateral olfactory tract
Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Muscle that attaches to the parhypurpophyses. The muscle inserts on the upper three to five caudal fin rays.
TAO:0000230
hypochordal longitudinalis
zebrafish_anatomy
ZFA:0000230
longitudinal hypochordal
Muscle that attaches to the parhypurpophyses. The muscle inserts on the upper three to five caudal fin rays.
GOC:cvs
ISBN:0080585272
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals that forms the lateral protrusion of the third ventricle. See also Di Dario (2004).
ZFA:0005493
TAO:0000231
TAO:0001799
lateral recess of diencephalic ventricle
lateral recesses
recessus lateralis
zebrafish_anatomy
ZFA:0000231
lateral recess
Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals that forms the lateral protrusion of the third ventricle. See also Di Dario (2004).
GOC:cvs
GOC:mh
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
lateral recess of diencephalic ventricle
ZFIN:ZDB-PUB-091221-27
lateral recesses
recessus lateralis
ZFIN:ZDB-PUB-961014-1280
Otic vesicle protrusion that is initially laterally located and then bifurcates and fuses anteriorly with the anterior protrusion, and posteriorly with the posterior protrusion.
TAO:0000232
zebrafish_anatomy
lateral semicircular canal primordia
lateral semicircular canal primordium
ZFA:0000232
otic vesicle lateral protrusion
Otic vesicle protrusion that is initially laterally located and then bifurcates and fuses anteriorly with the anterior protrusion, and posteriorly with the posterior protrusion.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-090330-11
lateral semicircular canal primordia
Portion of tissue, located on the lower jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration.
TAO:0000233
lower internal lip
lower semilunar valve
mandibular valve
zebrafish_anatomy
breathing valve
buccal valve
ZFA:0000233
lower oral valve
Portion of tissue, located on the lower jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-060921-12
lower internal lip
ZFIN:ZDB-PUB-060921-12
lower semilunar valve
ZFIN:ZDB-PUB-060921-12
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus.
TAO:0000234
maculae neglecta
zebrafish_anatomy
ZFA:0000234
macula neglecta
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-7
ZFIN:ZDB-PUB-020403-4
maculae neglecta
Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000235
magnocellular superficial pretectal nuclei
zebrafish_anatomy
ZFA:0000235
magnocellular superficial pretectal nucleus
Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
magnocellular superficial pretectal nuclei
Muscle that are part of the mandibular arch (pharyngeal arch 1).
TAO:0000236
mandibular muscles
zebrafish_anatomy
ZFA:0000236
mandibular muscle
Muscle that are part of the mandibular arch (pharyngeal arch 1).
GOC:cvs
ORCiD:0000-0002-2244-7917
mandibular muscles
TAO:0000237
medial forebrain bundles diencephalon
zebrafish_anatomy
ZFA:0000237
medial forebrain bundle diencephalon
medial forebrain bundles diencephalon
Telencephalic white matter which extends between the olfactory bulb and the ipsilateral ventral telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain.
TAO:0000238
tractus olfactorius medialis
zebrafish_anatomy
ZFA:0000238
medial olfactory tract
Telencephalic white matter which extends between the olfactory bulb and the ipsilateral ventral telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired.
TAO:0000239
mesocoracoid bones
zebrafish_anatomy
ZFA:0000239
mesocoracoid bone
mesocoracoid bones
Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired.
TAO:WD
The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit.
TAO:0000240
metapterygoids
zebrafish_anatomy
ZFA:0000240
metapterygoid
The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit.
GOC:ymb
ORCiD:0000-0002-9900-7880
metapterygoids
TAO:0000241
zebrafish_anatomy
ZFA:0000241
midline column
Gonochoristic organism that can produce male gametes.
CARO:0000027
TAO:0000242
zebrafish_anatomy
ZFA:0000242
male organism
Gonochoristic organism that can produce male gametes.
GOC:mh
ORCiD:0000-0001-9114-8737
Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000243
lateral line neuromast
lateral line organ
neuromasts
zebrafish_anatomy
ZFA:0000243
neuromast
Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
ZFIN:ZDB-PUB-961014-576
neuromasts
TAO:0000244
Edinger-Westphal nucleus
zebrafish_anatomy
ZFA:0000244
nucleus Edinger-Westphal
Sensory trigeminal nucleus that lies at the mediodorsal edge of the descending trigeminal root (DV). This nucleus is not clearly delineated.
TAO:0000245
sensory nucleus of the descending trigeminal root
zebrafish_anatomy
ZFA:0000245
nucleus of the descending root
Sensory trigeminal nucleus that lies at the mediodorsal edge of the descending trigeminal root (DV). This nucleus is not clearly delineated.
ZFIN:ZDB-PUB-961014-1280
sensory nucleus of the descending trigeminal root
ZFIN:ZDB-PUB-961014-1280
Telencephalic nucleus which is located immediately ventral to the caudal zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000246
zebrafish_anatomy
ZFA:0000246
nucleus taeniae
Telencephalic nucleus which is located immediately ventral to the caudal zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000247
CN-VIII
auditory nerve
octaval nerve
statoacoustic nerve
zebrafish_anatomy
cochleovestibular nerve
ZFA:0000247
cranial nerve VIII
cochleovestibular nerve
ZFIN:ZDB-PUB-190924-19
Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000248
magnocellular preoptic nuclei
zebrafish_anatomy
ZFA:0000248
magnocellular preoptic nucleus
Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
magnocellular preoptic nuclei
TAO:0000249
CN-I
olfactory nerve
zebrafish_anatomy
ZFA:0000249
cranial nerve I
Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series. It is derived from the neural crest and is located in 2nd pharyngeal arch.
TAO:0000250
opercles
zebrafish_anatomy
ZFA:0000250
opercle
Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series. It is derived from the neural crest and is located in 2nd pharyngeal arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-120529-44
opercles
ZFA:0000863
zebrafish_anatomy
ZFA:0000251
ZFIN not using series organization if at all possible.
opercular-branchiostegal series
true
Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm.
TAO:0000252
optic tracts
tractus opticus
zebrafish_anatomy
ZFA:0000252
optic tract
Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm.
GOC:mh
ORCiD:0000-0001-9114-8737
optic tracts
tractus opticus
ZFIN:ZDB-PUB-961014-1280
Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anteriolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone.
TAO:0000253
orbitosphenoids
zebrafish_anatomy
ZFA:0000253
orbitosphenoid
Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anteriolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone.
GOC:mh
ORCiD:0000-0001-9114-8737
orbitosphenoids
Embryonic structure that develops into the pancreatic bud.
TAO:0000254
pancreatic anlage
zebrafish_anatomy
ZFA:0000254
During normal development, the exocrine anlage arises from bilateral sets of progenitors within the blastoderm margin that migrate to the midline use and differentiate prior to joining the rostral intestine. ZDB-PUB-050623-3.
pancreas primordium
Embryonic structure that develops into the pancreatic bud.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
pancreatic anlage
ZFIN:ZDB-PUB-050623-3
Mesoderm which is lateral to the neural tube on both sides.
ZFA:0000942
TAO:0000255
zebrafish_anatomy
paraxial mesenchyme
ZFA:0000255
paraxial mesoderm
Mesoderm which is lateral to the neural tube on both sides.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0000256
pars subcommissuralis of V
zebrafish_anatomy
ZFA:0000256
pars subcommissuralis of ventral telencephalon
Cartilage which is part of the pectoral fin.
TAO:0000257
pectoral fin cartilages
zebrafish_anatomy
ZFA:0000257
pectoral fin cartilage
Cartilage which is part of the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
pectoral fin cartilages
Musculature that is part of the pelvic fin.
TAO:0000258
zebrafish_anatomy
ZFA:0000258
pelvic fin musculature
Musculature that is part of the pelvic fin.
GOC:mh
ORCiD:0000-0001-9114-8737
One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast. One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000259
mandibular lateral lines
mandibular line
zebrafish_anatomy
ZFA:0000259
mandibular lateral line
One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast. One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
mandibular lateral lines
mandibular line
ZFIN:ZDB-PUB-000523-3
Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain.
TAO:0000260
periventricular nuclei
ventral zone of periventricular hypothalamus
zebrafish_anatomy
ZFA:0000260
periventricular nucleus
Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
periventricular nuclei
TAO:0000261
zebrafish_anatomy
ZFA:0000261
pharyngohyoid
One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The posterior semicircular canal is associated with the posterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
ZFA:0000483
TAO:0000262
caudal vertical semicircular canal
posterior semicircular canals
posterior semicircular duct
zebrafish_anatomy
ZFA:0000262
posterior semicircular canal
One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The posterior semicircular canal is associated with the posterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
posterior semicircular canals
Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.
TAO:0000263
precaudal vertebrae
zebrafish_anatomy
abdominal vertebra
trunk vertebra
ZFA:0000263
precaudal vertebra
Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-031103-13
precaudal vertebrae
Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle.
TAO:0000264
preopercles
zebrafish_anatomy
ZFA:0000264
preopercle
Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle.
GOC:mh
ORCiD:0000-0001-9114-8737
preopercles
Portion of presumptive mesoderm fated to become dorsal mesoderm. Determined by fate mapping.
TAO:0000265
zebrafish_anatomy
ZFA:0000265
presumptive dorsal mesoderm
Portion of presumptive mesoderm fated to become dorsal mesoderm. Determined by fate mapping.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0000266
pretecto mammillary tract
pretecto-mamillary tract
pretectomamillary tract
zebrafish_anatomy
TPp
ZFA:0000266
pretecto-mammillary tract
Portion of tissue which is the most peripheral layer and present only in the rostroventral olfactory bulb. From Neuroanatomy of the Zebrafish Brain.
TAO:0000267
olfactory nerve layer
stratum nervosum bulbi olfactorii
zebrafish_anatomy
ZFA:0000267
primary olfactory fiber layer
Portion of tissue which is the most peripheral layer and present only in the rostroventral olfactory bulb. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
olfactory nerve layer
ZFIN:ZDB-PUB-050523-2
Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials.
TAO:0000268
anal fin proximal radials
zebrafish_anatomy
ZFA:0000268
anal fin proximal radial
Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials.
GOC:cvs
ORCiD:0000-0002-2244-7917
anal fin proximal radials
Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays.
TAO:0000269
flexor caudalis ventralis inferioris
inferior ventral flexor
zebrafish_anatomy
CVI
ZFA:0000269
inferior caudal ventral flexor
Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae.
TAO:0000270
maxillae
zebrafish_anatomy
ZFA:0000270
maxilla
The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae.
GOC:ymb
ORCiD:0000-0002-9900-7880
maxillae
The internal skeletal supports of the median and paired fins.
TAO:0000271
radials
zebrafish_anatomy
ZFA:0000271
radial
The internal skeletal supports of the median and paired fins.
TAO:curator
radials
System responsible for the exchange of gases across the gill membranes.
TAO:0000272
zebrafish_anatomy
ZFA:0000272
respiratory system
System responsible for the exchange of gases across the gill membranes.
GOC:mh
ORCiD:0000-0001-9114-8737
true
Octaval sensory nucleus located rostral to the magnocellular octaval nucleus and arches dorsally around the descending trigeminal root. Receives some vestibular information and is part of the vestibulo-ocular reflex circuitry and projects to abducens and oculomotor nuclei and descends to the spinal cord. From Neuroanatomy of the Zebrafish Brain.
TAO:0000274
anterior octaval nucleus
nucleus octavus anterior
zebrafish_anatomy
ZFA:0000274
rostral octaval nucleus
Octaval sensory nucleus located rostral to the magnocellular octaval nucleus and arches dorsally around the descending trigeminal root. Receives some vestibular information and is part of the vestibulo-ocular reflex circuitry and projects to abducens and oculomotor nuclei and descends to the spinal cord. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000275
zebrafish_anatomy
ZFA:0000275
rostral tegmental nucleus
TAO:0000276
zebrafish_anatomy
ZFA:0000276
rostrolateral thalamic nucleus of Butler & Saidel
Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins.
TAO:0000277
scales
zebrafish_anatomy
ZFA:0000277
scale
Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins.
TAO:WD
scales
TAO:0000278
zebrafish_anatomy
ZFA:0000278
secondary gustatory nucleus medulla oblongata
Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form.
TAO:0000279
PSM
presomitic mesoderm
zebrafish_anatomy
ZFA:0000279
segmental plate
Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
Medial division of the valvula cerebelli.
TAO:0000280
medial division
valvula cerebelli, pars medialis
zebrafish_anatomy
ZFA:0000280
medial valvula cerebelli
Medial division of the valvula cerebelli.
GOC:mh
ORCiD:0000-0001-9114-8737
Specialized neuronal receptor cells of the posterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.)
TAO:0000281
sensory hair cells posterior macula
zebrafish_anatomy
ZFA:0000281
hair cell posterior macula
Specialized neuronal receptor cells of the posterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.)
ZFIN:ZDB-PUB-961014-576
sensory hair cells posterior macula
Nervous system responsible for transmitting sensory stimuli.
TAO:0000282
sensory systems
zebrafish_anatomy
ZFA:0000282
sensory system
Nervous system responsible for transmitting sensory stimuli.
GOC:mh
ORCiD:0000-0001-9114-8737
sensory systems
true
Dermal bone lying below the opercle. The subopercle is a paired bone.
TAO:0000284
subopercles
zebrafish_anatomy
ZFA:0000284
subopercle
Dermal bone lying below the opercle. The subopercle is a paired bone.
GOC:mh
ORCiD:0000-0001-9114-8737
subopercles
Pectoral fin muscle that develops from the primitive pectoral fin adductor. The adductor superficialis originates at the cleithrum and inserts on all fins rays except the first. Insertion of the adductor superficialis on fin rays is distal to the fin ray bases.
TAO:0000285
adductor superficialis
superficial adductors
zebrafish_anatomy
ZFA:0000285
superficial adductor
Pectoral fin muscle that develops from the primitive pectoral fin adductor. The adductor superficialis originates at the cleithrum and inserts on all fins rays except the first. Insertion of the adductor superficialis on fin rays is distal to the fin ray bases.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
adductor superficialis
ZFIN:ZDB-PUB-050920-7
superficial adductors
Slow twitch muscle derived from the lateral wedge-shaped strip of slow muscle cells originally positioned at the lateral end of the horizontal myoseptum. In the adult it is a thin band of muscle positioned mediolaterally above the epaxial-hypaxial junction, posteriorly the superficial lateralis elaborates into the superficial lateralis dorsalis and superficial lateralis ventralis.
TAO:0000286
lateralis superficialis
zebrafish_anatomy
lateral superficial muscle
ZFA:0000286
superficial lateralis
Slow twitch muscle derived from the lateral wedge-shaped strip of slow muscle cells originally positioned at the lateral end of the horizontal myoseptum. In the adult it is a thin band of muscle positioned mediolaterally above the epaxial-hypaxial junction, posteriorly the superficial lateralis elaborates into the superficial lateralis dorsalis and superficial lateralis ventralis.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-080519-4
ZFIN:ZDB-PUB-171118-8
ZFIN:ZDB-PUB-961219-12
Paired, deep caudal fin muscles that originate from the 30th vertebra and extend toward the dorsal base of the caudal fin where they insert broadly on fin rays.
TAO:0000287
flexor caudalis dorsalis superioris
superior dorsal flexor
zebrafish_anatomy
CDS
ZFA:0000287
superior caudal dorsal flexor
Paired, deep caudal fin muscles that originate from the 30th vertebra and extend toward the dorsal base of the caudal fin where they insert broadly on fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
TAO:0000288
zebrafish_anatomy
ZFA:0000288
supracarinalis
zebrafish_anatomy
ZFA:0000289
Supramaxillary bones are absent from D. rerio, as in other ostariophysans (Fink and Fink, '81)
supramaxillae
true
Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium.
TAO:0000290
zebrafish_anatomy
ZFA:0000290
sphenoid region
Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium.
GOC:mh
ORCiD:0000-0001-9114-8737
Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line.
TAO:0000291
intermediate octavolateral nucleus
medial octavolateralis nuclei
zebrafish_anatomy
MON
ZFA:0000291
medial octavolateralis nucleus
Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line.
GOC:ymb
ORCiD:0000-0002-9900-7880
medial octavolateralis nuclei
Organism subdivision which is the collection of anatomical structures on the body surface.
TAO:0000292
surface structures
zebrafish_anatomy
ZFA:0000292
surface structure
Organism subdivision which is the collection of anatomical structures on the body surface.
GOC:mh
ORCiD:0000-0001-9114-8737
surface structures
Multi-tissue structure that is located between the dorsal diencephalon and the mesencephalon and contains the caudal commissure. From Neuroanatomy of the Zebrafish Brain.
TAO:0000293
zebrafish_anatomy
ZFA:0000293
synencephalon
Multi-tissue structure that is located between the dorsal diencephalon and the mesencephalon and contains the caudal commissure. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is part of the caudal tuberculum. In goldfish the lateral torus is exclusively involved with gustatory and general visceral systems.
TAO:0000294
lateral torus
zebrafish_anatomy
ZFA:0000294
torus lateralis
Diencephalic nucleus which is part of the caudal tuberculum. In goldfish the lateral torus is exclusively involved with gustatory and general visceral systems.
GOC:cvs
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
PMID:9552123
A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear.
TAO:0000295
5th ganglion
fifth ganglion
gV
trigeminal ganglia
zebrafish_anatomy
ZFA:0000295
trigeminal ganglion
A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
trigeminal ganglia
TAO:0000296
zebrafish_anatomy
ZFA:0000296
uncrossed tecto-bulbar tract
The multi-tissue, vagal lobe is a large, paired brain stem structure flanking the unpaired facial lobe laterally. The vagal lobe contains motor and gustatory neurons. While some degree of histological segregation is apparent within the vagal lobe, a clear lamination, as seen in goldfish or carp is absent.
LX
zebrafish_anatomy
ZFA:0000297
vagal lobe
The multi-tissue, vagal lobe is a large, paired brain stem structure flanking the unpaired facial lobe laterally. The vagal lobe contains motor and gustatory neurons. While some degree of histological segregation is apparent within the vagal lobe, a clear lamination, as seen in goldfish or carp is absent.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-1280
LX
ZFIN:ZDB-PUB-961014-1280
Is a surface structure and is the external opening of the cloaca.
TAO:0000298
cloacal opening
cloacal vent
zebrafish_anatomy
ZFA:0000298
vent
Is a surface structure and is the external opening of the cloaca.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
cloacal opening
ZFIN:ZDB-PUB-110602-26
Peripheral nucleus of the ventral telencephalon that is a band of tightly packed cells starting at the level of the anterior commissure and extends into the telencephalo-diencephalic boundary region. From Neuroanatomy of the Zebrafish Brain.
TAO:0000299
ENv
endopeduncular nucleus, ventral part
entopeduncular nucleus, ventral part
nucleus entopeduncularis, pars ventralis
ventral entopeduncular nucleus V
zebrafish_anatomy
ZFA:0000299
The GAD67-positive (dorsal) entopeduncular
nucleus (EN= former ENd) appears to be anatomically
separate from the GAD67-negative bed nucleus of the
stria medullaris (BNSM), which was formerly called the ventral
part of the entopeduncular nucleus (ENv). ZDB-PUB-090814-14.
ventral entopeduncular nucleus of ventral telencephalon
Peripheral nucleus of the ventral telencephalon that is a band of tightly packed cells starting at the level of the anterior commissure and extends into the telencephalo-diencephalic boundary region. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm).
TAO:0000300
lower hypohyal
ventrohyal
zebrafish_anatomy
ZFA:0000300
ventral hypohyal bone
The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm).
GOC:mh
ORCiD:0000-0001-9114-8737
Extraocular muscle that runs parallel to the long axis of the fish and inserts on the anterior side of the eye at the sclera-corneal (SC) junction. The medial rectus lies in the same anatomical plane as the lateral rectus. The medial rectus is innervated by the oculomotor nerve.
TAO:0000301
medial recti
zebrafish_anatomy
ZFA:0000301
Mature form at Hatching:Long-pec.
medial rectus
Extraocular muscle that runs parallel to the long axis of the fish and inserts on the anterior side of the eye at the sclera-corneal (SC) junction. The medial rectus lies in the same anatomical plane as the lateral rectus. The medial rectus is innervated by the oculomotor nerve.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111205-9
medial recti
Habenular nucleus positioned ventromedially to the dorsal habenular nuclei. The ventral habenular nuclei are paired and symmetrical, each have a conical shape defined by a wide rostral end, occupying the entire anterior region of the habenula, and a narrow caudal end. The axons of the ventral habenular nucleus passed laterally through the interpeduncular nucleus and projected to the ventral part of the median raphe. The ventral habenular nucleus is homolog mammalian lateral habenular nucleus.
TAO:0000302
zebrafish_anatomy
ZFA:0000302
ventral habenular nucleus
Habenular nucleus positioned ventromedially to the dorsal habenular nuclei. The ventral habenular nuclei are paired and symmetrical, each have a conical shape defined by a wide rostral end, occupying the entire anterior region of the habenula, and a narrow caudal end. The axons of the ventral habenular nucleus passed laterally through the interpeduncular nucleus and projected to the ventral part of the median raphe. The ventral habenular nucleus is homolog mammalian lateral habenular nucleus.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-100202-7
ZFIN:ZDB-PUB-120709-5
Gonochoristic organism that can produce female gametes.
CARO:0000028
TAO:0000303
zebrafish_anatomy
ZFA:0000303
female organism
Gonochoristic organism that can produce female gametes.
GOC:mh
ORCiD:0000-0001-9114-8737
Brain structure which is the ventral part of the telencephalon and is consists of periventricular nuclei surrounding the unpaired median ventricle and those which have migrated away from the ependyma. From Neuroanatomy of the Zebrafish Brain.
TAO:0000304
area ventralis telencephali
subpallium
zebrafish_anatomy
ZFA:0000304
ventral telencephalon
Brain structure which is the ventral part of the telencephalon and is consists of periventricular nuclei surrounding the unpaired median ventricle and those which have migrated away from the ependyma. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Groove that separates the paired inferior (or lateral) lobes of the hypothalamus from the tuberal hypothalamus.
TAO:0000305
zebrafish_anatomy
hypothalamic sulcus
ZFA:0000305
ventral sulcus
Groove that separates the paired inferior (or lateral) lobes of the hypothalamus from the tuberal hypothalamus.
GOC:mh
ORCiD:0000-0001-9114-8737
http://en.wikipedia.org/wiki/Hypothalamic_sulcus
TAO:0000306
zebrafish_anatomy
ZFA:0000306
ventrolateral thalamic nucleus
Brain structure which is part of the cerebellum consists of the paired granular eminentia and the medial caudal lobe. From Neuroanatomy of the Zebrafish Brain.
TAO:0000307
zebrafish_anatomy
ZFA:0000307
vestibulolateralis lobe
Brain structure which is part of the cerebellum consists of the paired granular eminentia and the medial caudal lobe. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
A thin medial unpaired dermal bone that is kite or paddle-shape. Underlying the ethmoid, and slightly overlapping the parasphenoid posteriorly, the prevomer bears an anterolateral projection that terminates in a concave depression in which the preethmoids sit.
TAO:0000308
vomer
zebrafish_anatomy
ZFA:0000308
prevomer
A thin medial unpaired dermal bone that is kite or paddle-shape. Underlying the ethmoid, and slightly overlapping the parasphenoid posteriorly, the prevomer bears an anterolateral projection that terminates in a concave depression in which the preethmoids sit.
GOC:mh
ORCiD:0000-0001-9114-8737
vomer
ZFIN:ZDB-PUB-961014-192
The portion of the YSL that is outside of the blastoderm margin during epiboly.
TAO:0000309
E-YSL
zebrafish_anatomy
ZFA:0000309
external yolk syncytial layer
The portion of the YSL that is outside of the blastoderm margin during epiboly.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
E-YSL
ZFIN:ZDB-PUB-961014-576
Cranial nerve which exits the medulla oblongata and controls the lateral movement of the eye. The caudal and rostral roots fuse together and course rostrally once they are outside the brainstem. The abducens nerve innervates the lateral rectus extraocular muscle.
TAO:0000310
CN-VI
abducens nerve
nervus abducens
zebrafish_anatomy
ZFA:0000310
cranial nerve VI
Cranial nerve which exits the medulla oblongata and controls the lateral movement of the eye. The caudal and rostral roots fuse together and course rostrally once they are outside the brainstem. The abducens nerve innervates the lateral rectus extraocular muscle.
GOC:mh
GOC:ymb
ISBN:3764351209
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-131119-12
Is a mandibular muscle that consists of three subdivisions A1, A2, and A3. All three originate on the hyomandibula and suspensorium but each has a distinct insertion. A1 inserts on the maxilla, A2 inserts along the caudal margin of the articular and A3 inserts on the medial surface of the articular.
TAO:0000311
zebrafish_anatomy
ZFA:0000311
adductor mandibulae complex
Is a mandibular muscle that consists of three subdivisions A1, A2, and A3. All three originate on the hyomandibula and suspensorium but each has a distinct insertion. A1 inserts on the maxilla, A2 inserts along the caudal margin of the articular and A3 inserts on the medial surface of the articular.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070330-4
Sensory trigeminal nucleus located at the tectal ventricle near the synencephalon and optic tectum that contains large pyriform neurons. The sensory fibers of the large pyriform neurons that run peripherally in the trigeminal nerve.
TAO:0000312
mesencephalic nuclei of trigeminal nerves
zebrafish_anatomy
ZFA:0000312
mesencephalic nucleus of trigeminal nerve
Sensory trigeminal nucleus located at the tectal ventricle near the synencephalon and optic tectum that contains large pyriform neurons. The sensory fibers of the large pyriform neurons that run peripherally in the trigeminal nerve.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-1280
mesencephalic nuclei of trigeminal nerves
Series of paired muscles that have a distal attachment at the lateral base of each ray and a proximal attachment to the hypaxialis. The left and right inclinators attach the integument and trunk muscles to the base of each ray.
TAO:0000313
anal inclinators
inclinatores anales
zebrafish_anatomy
ZFA:0000313
anal inclinator
Series of paired muscles that have a distal attachment at the lateral base of each ray and a proximal attachment to the hypaxialis. The left and right inclinators attach the integument and trunk muscles to the base of each ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
anal inclinators
inclinatores anales
ZFIN:ZDB-PUB-171118-8
One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The anterior semicircular canal is associated with the anterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
ZFA:0000675
TAO:0000314
anterior semicircular canals
anterior semicircular duct
rostral vertical semicircular canal
zebrafish_anatomy
ZFA:0000314
anterior semicircular canal
One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The anterior semicircular canal is associated with the anterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
anterior semicircular canals
Otolith part of lagena.
TAO:0000315
lagenar otolith
lagenolith
zebrafish_anatomy
ZFA:0000315
asteriscus
Otolith part of lagena.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020403-4
Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch, the 'tongue' of the a fish. Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals.
TAO:0000316
basihyoid
glossohyal
zebrafish_anatomy
basihyal
ZFA:0000316
basihyal bone
Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch, the 'tongue' of the a fish. Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals.
GOC:cvs
ORCiD:0000-0002-2244-7917
The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins.
TAO:0000317
axial skeleton
zebrafish_anatomy
ZFA:0000317
postcranial axial skeleton
The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins.
GOC:mh
ORCiD:0000-0001-9114-8737
CNS white matter that is part of the brain stem or spinal cord.
TAO:0000318
brain stem and spinal tract/commissure
brain stem/spinal tracts and commissures
zebrafish_anatomy
ZFA:0000318
brainstem and spinal white matter
CNS white matter that is part of the brain stem or spinal cord.
GOC:mh
ORCiD:0000-0001-9114-8737
brain stem/spinal tracts and commissures
The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber.
TAO:0000319
branchiostegal membranes
zebrafish_anatomy
ZFA:0000319
branchiostegal membrane
The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber.
http://www.fishbase.org/glossary/Glossary.php?q=branchiostegal+membrane
branchiostegal membranes
Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain.
TAO:0000320
posterior commissure
zebrafish_anatomy
PC
ZFA:0000320
caudal commissure
Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000321
caudal levators
zebrafish_anatomy
ZFA:0000321
caudal levator
caudal levators
TAO:0000322
caudal octaval nuclei
zebrafish_anatomy
ZFA:0000322
caudal octaval nucleus
caudal octaval nuclei
Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesethmoid meets the preethmoids in synchondroses.
TAO:0000323
ethmoid bone
zebrafish_anatomy
ZFA:0000323
mesethmoid bone
Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesethmoid meets the preethmoids in synchondroses.
GOC:mh
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is part of the caudal hypothalamus and surrounds the paired posterior ventricular recesses of the third ventricle. From Neuroanatomy of the Zebrafish Brain.
TAO:0000324
caudal zone of periventricular hypothalamus
nucleus periventricularis hypothalami, zona caudalis
zebrafish_anatomy
ZFA:0000324
caudal periventricular hypothalamus
Diencephalic nucleus which is part of the caudal hypothalamus and surrounds the paired posterior ventricular recesses of the third ventricle. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is part of the caudal tuberculum. It is targeted by ascending fibers originating from the secondary gustatory/ visceral complex.
TAO:0000325
posterior thalamic nucleus
zebrafish_anatomy
ZFA:0000325
caudal thalamic nucleus
Diencephalic nucleus which is part of the caudal tuberculum. It is targeted by ascending fibers originating from the secondary gustatory/ visceral complex.
GOC:cvs
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-160628-14
Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae.
TAO:0000326
caudal vertebrae
zebrafish_anatomy
ZFA:0000326
caudal vertebra
Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae.
GOC:mh
ORCiD:0000-0001-9114-8737
caudal vertebrae
TAO:0000327
zebrafish_anatomy
ZFA:0000327
central zone of the optic tectum
Musculature system of the pharyngeal and head regions.
TAO:0000328
zebrafish_anatomy
head muscles
ZFA:0000328
cephalic musculature
Musculature system of the pharyngeal and head regions.
GOC:cvs
ORCiD:0000-0002-2244-7917
The egg shell.
TAO:0000329
zebrafish_anatomy
ZFA:0000329
chorion
The egg shell.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
Space proximal to the urogenital pore where the pronephric duct, intestine and the oviduct or sperm duct empties.
TAO:0000330
cloaca lumen
zebrafish_anatomy
ZFA:0000330
cloacal chamber
Space proximal to the urogenital pore where the pronephric duct, intestine and the oviduct or sperm duct empties.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0000331
commissura infima Halleri
commissura infima of Haller
zebrafish_anatomy
ZFA:0000331
commissure infima of Haller
Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired.
TAO:0000332
coracoids
zebrafish_anatomy
scapulocoracoid
ZFA:0000332
coracoid
Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired.
TAO:GA_TG
coracoids
TAO:0000333
zebrafish_anatomy
ZFA:0000333
mesovarium
Brain structure which is located ventrolaterally to the caudal preglomerular nucleus and in the dorsomedial aspect of the caudal protrusion of the inferior lobe of the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000334
mammillary body
zebrafish_anatomy
ZFA:0000334
corpus mamillare
Brain structure which is located ventrolaterally to the caudal preglomerular nucleus and in the dorsomedial aspect of the caudal protrusion of the inferior lobe of the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000335
tractus tectobulbaris cruciatus
zebrafish_anatomy
ZFA:0000335
crossed tecto-bulbar tract
ZFA:0000364
zebrafish_anatomy
ZFA:0000336
hypural arches
true
zebrafish_anatomy
ZFA:0000337
Doesn't seem to exist in zebrafish.
dermopalatine
true
CNS white matter that is part of the diencephalon.
TAO:0000338
diencephalic tract/commissure
zebrafish_anatomy
ZFA:0000338
diencephalic white matter
CNS white matter that is part of the diencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical system that processes ingested substances.
TAO:0000339
zebrafish_anatomy
ZFA:0000339
digestive system
Anatomical system that processes ingested substances.
GOC:mh
ORCiD:0000-0001-9114-8737
Peripheral nucleus of the ventral telencephalon which is a band of tightly packed cells starting at the level of the anterior commissure and disappearing more rostrally. May be homologous to the intermediate nucleus of the area ventralis of other species. From Neuroanatomy of the Zebrafish Brain.
TAO:0000340
ENd
endopeduncular nucleus, dorsal part
entopeduncular nucleus, dorsal part
nucleus entopeduncularis, pars dorsalis
zebrafish_anatomy
ZFA:0000340
dorsal entopeduncular nucleus of ventral telencephalon
Peripheral nucleus of the ventral telencephalon which is a band of tightly packed cells starting at the level of the anterior commissure and disappearing more rostrally. May be homologous to the intermediate nucleus of the area ventralis of other species. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae, then extend toward the dorsal base of the caudal fin where they insert broadly on fin rays.
TAO:0000341
dorsal flexors
flexor caudalis dorsalis inferioris
zebrafish_anatomy
CDI
dorsal flexor
ZFA:0000341
inferior caudal dorsal flexor
Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae, then extend toward the dorsal base of the caudal fin where they insert broadly on fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
dorsal flexors
Muscle of the dorsal fin that are thin, arise from the lateral edge of fin bases, and attach to the skin just above the epaxial muscle. The inclinator muscles bend the fin sideways. There is one dorsal inclinator for each dorsal fin lepidotrichium.
TAO:0000342
dorsal inclinators
inclinator dorsalis
zebrafish_anatomy
ZFA:0000342
dorsal inclinator
Muscle of the dorsal fin that are thin, arise from the lateral edge of fin bases, and attach to the skin just above the epaxial muscle. The inclinator muscles bend the fin sideways. There is one dorsal inclinator for each dorsal fin lepidotrichium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
dorsal inclinators
Periventricular nucleus which lies rostral to the anterior commissure and is contiguous caudally with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000343
area ventralis telencephali, nucleus dorsalis
dorsal nucleus of V
zebrafish_anatomy
Vd
dorsal division of ventral telencephalic area
ZFA:0000343
dorsal nucleus of ventral telencephalon
Periventricular nucleus which lies rostral to the anterior commissure and is contiguous caudally with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Vd
ZFIN:ZDB-PUB-961014-1280
One of eight distinct lateral lines in the 4-day larva positioned posterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000344
middle lateral lines
zebrafish_anatomy
ZFA:0000344
middle lateral line
One of eight distinct lateral lines in the 4-day larva positioned posterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
middle lateral lines
Extraocular muscle that inserts at the scleral corneal junction on the dorsal side of the eye. The dorsal rectus is innervated by the oculomotor nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions in the adult eye though they have distinct insertion sites in 5dpf fish.
TAO:0000345
dorsal recti
superior rectus
zebrafish_anatomy
ZFA:0000345
Mature form at Larval:Protruding-mouth.
dorsal rectus
Extraocular muscle that inserts at the scleral corneal junction on the dorsal side of the eye. The dorsal rectus is innervated by the oculomotor nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions in the adult eye though they have distinct insertion sites in 5dpf fish.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111205-9
dorsal recti
superior rectus
ZFIN:ZDB-PUB-110512-18
Tegmental nucleus that is immediately adjacent to the nucleus lateralis valvulae (NLV). This nucleus is sometimes considered part of the NLV but the cells are more densely packed. The nucleus extends rostrally into the mesencephalon.
TAO:0000346
nucleus tegmentalis dorsalis
zebrafish_anatomy
DTN
ZFA:0000346
dorsal tegmental nucleus
Tegmental nucleus that is immediately adjacent to the nucleus lateralis valvulae (NLV). This nucleus is sometimes considered part of the NLV but the cells are more densely packed. The nucleus extends rostrally into the mesencephalon.
ZFIN:ZDB-PUB-961014-1280
Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000347
zebrafish_anatomy
ZFA:0000347
dorsal hypothalamic zone
Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
zebrafish_anatomy
ZFA:0000348
duodenum
true
Skeletal muscle that is the dorsal-most component of the body musculature. The anterior region attaches to the back of the cranial vault and the dorsal region of the pectoral girdle. The epaxialis is bound to the skin by fibrous connective tissue and internally it inserts over the dorsal portion of the vertebral centra and fin pterygiophores and the neural spines. Posteriorly the epaxialis overlies the modified muscle of the caudal fin and inserts onto the dorsal ray bases of the fin. The anterior epaxial plays a role in feeding and the posterior region is central to locomotion.
TAO:0000349
zebrafish_anatomy
ZFA:0000349
epaxialis
Skeletal muscle that is the dorsal-most component of the body musculature. The anterior region attaches to the back of the cranial vault and the dorsal region of the pectoral girdle. The epaxialis is bound to the skin by fibrous connective tissue and internally it inserts over the dorsal portion of the vertebral centra and fin pterygiophores and the neural spines. Posteriorly the epaxialis overlies the modified muscle of the caudal fin and inserts onto the dorsal ray bases of the fin. The anterior epaxial plays a role in feeding and the posterior region is central to locomotion.
GOC:cvs
ISBN:0125296509
ORCiD:0000-0002-2244-7917
Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally.
TAO:0000350
epipleurals
zebrafish_anatomy
ZFA:0000350
epipleural
Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally.
GOC:mh
ORCiD:0000-0001-9114-8737
epipleurals
Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ.
TAO:0000351
ethmoid region
zebrafish_anatomy
ZFA:0000351
olfactory region
Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue which is located between the glomerular layer and internal cellular layer of the olfactory bulb, and contains large mitral cells whose efferent axons form most of the lateral and medial olfactory tracts. From Neuroanatomy of the Zebrafish Brain.
TAO:0000352
stratum cellulare externum bulbi olfactorii
zebrafish_anatomy
ZFA:0000352
external cellular layer
Portion of tissue which is located between the glomerular layer and internal cellular layer of the olfactory bulb, and contains large mitral cells whose efferent axons form most of the lateral and medial olfactory tracts. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Paired fasciculus that connects the habenula to the interpeduncular nucleus. In zebrafish the fascicles seem to gather under the raphe nucleus and don't extend to the medulla.
TAO:0000353
fasciculus retroflexi
habenulo-interpeduncular tract
habenulointerpeduncular tract
tractus habenulo-interpeduncularis
zebrafish_anatomy
ZFA:0000353
fasciculus retroflexus
Paired fasciculus that connects the habenula to the interpeduncular nucleus. In zebrafish the fascicles seem to gather under the raphe nucleus and don't extend to the medulla.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-010601-11
fasciculus retroflexi
Compound organ that consists of gill filaments, gill lamellae, gill rakers and pharyngeal arches 3-7. The gills are responsible for primary gas exchange between the blood and the surrounding water.
TAO:0000354
gills
zebrafish_anatomy
ZFA:0000354
gill
Compound organ that consists of gill filaments, gill lamellae, gill rakers and pharyngeal arches 3-7. The gills are responsible for primary gas exchange between the blood and the surrounding water.
http:http://www.briancoad.com/Dictionary/DicPics/gill.htm
gills
Roof plate that is part of the midbrain.
TAO:0000355
zebrafish_anatomy
ZFA:0000355
roof plate midbrain region
Roof plate that is part of the midbrain.
GOC:CVS
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7. They support the gills. The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth.
TAO:0000356
gill rakers
zebrafish_anatomy
ZFA:0000356
gill raker
Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7. They support the gills. The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth.
ZFIN:ZDB-PUB-081008-12
http://www.briancoad.com/Dictionary/G.htm
gill rakers
Multi-tissue structure which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain.
TAO:0000357
stratum glomerulosum bulbi olfactorii
zebrafish_anatomy
ZFA:0000357
glomerular layer
Multi-tissue structure which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Portion of tissue which is the innermost layer of the corpus cerebelli and consists of small granule cells and larger Golgi cells. The granule cell receive excitatory input from the mossy fibers, and send parallel fibers to the molecular layer where they synapse with Purkinje cell dendrites.
TAO:0000358
zebrafish_anatomy
ZFA:0000358
granular layer corpus cerebelli
Portion of tissue which is the innermost layer of the corpus cerebelli and consists of small granule cells and larger Golgi cells. The granule cell receive excitatory input from the mossy fibers, and send parallel fibers to the molecular layer where they synapse with Purkinje cell dendrites.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0000359
commissura habenularum
zebrafish_anatomy
ZFA:0000359
habenular commissure
Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation.
TAO:0000360
zebrafish_anatomy
ZFA:0000360
heart tube
Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation.
ZFIN:ZDB-PUB-010219-2
true
The hypaxialis consists of that part of the body musculature lying ventral to the midlateral horizontal septum.
TAO:0000362
zebrafish_anatomy
ZFA:0000362
hypaxialis
The hypaxialis consists of that part of the body musculature lying ventral to the midlateral horizontal septum.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-151106-17
Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials.
TAO:0000363
hypobranchial bones
zebrafish_anatomy
ZFA:0000363
hypobranchial bone
Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
hypobranchial bones
Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length).
TAO:0000364
hyp
hypuralia
hypurals
zebrafish_anatomy
ZFA:0000364
hypural
Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length).
ZFIN:ZDB-PUB-011008-1
hypurals
Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish.
TAO:0000365
nasal bones
zebrafish_anatomy
ZFA:0000365
nasal bone
Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish.
ZFIN:ZDB-PUB-961014-192
nasal bones
Hindbrain nucleus that provides descending innervation to the brainstem and spinal cord. Early in development the inferior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections inferior raphe nucleus are restricted to posterior.
TAO:0000366
posterior raphe nucleus
zebrafish_anatomy
ZFA:0000366
inferior raphe nucleus
Hindbrain nucleus that provides descending innervation to the brainstem and spinal cord. Early in development the inferior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections inferior raphe nucleus are restricted to posterior.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-081114-19
ZFA:0001410
zebrafish_anatomy
ZFA:0000367
infraorbital bridge
true
The outer protective barrier that separates the animal from its aquatic environment.
TAO:0000368
skin
zebrafish_anatomy
ZFA:0000368
integument
The outer protective barrier that separates the animal from its aquatic environment.
ZFIN:ZDB-PUB-040726-12
Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles.
TAO:0000369
zebrafish_anatomy
intermandibular muscle
ZFA:0000369
intermandibularis
Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles.
GOC:ymb
ORCiD:0000-0002-9900-7880
intermandibular muscle
ZFIN:ZDB-PUB-060921-12
TAO:0000370
intermediate thalamic nuclei
zebrafish_anatomy
ZFA:0000370
intermediate thalamic nucleus
intermediate thalamic nuclei
TAO:0000371
internal pharyngoclavicularae
zebrafish_anatomy
ZFA:0000371
internal pharyngoclavicularis
internal pharyngoclavicularae
TAO:0000372
zebrafish_anatomy
ZFA:0000372
interpeduncular nucleus medulla oblongata
ZFS:0000042
ZFS:0000043
zebrafish_anatomy
ZFA:0000373
juvenile
true
Otolith organ comprised of the macula lagena and asteriscus. The lagena is part of the pars inferior. The lagena functions in the detection of sound.
TAO:0000374
lagenas
zebrafish_anatomy
ZFA:0000374
lagena
Otolith organ comprised of the macula lagena and asteriscus. The lagena is part of the pars inferior. The lagena functions in the detection of sound.
GOC:ymb
ORCiD:0000-0002-9900-7880
lagenas
ZFA:0000557
ZFA:0000586
ZFA:0001583
zebrafish_anatomy
ZFA:0000375
last preural centrum
true
Dermal bone that is situated under or posterior to the eye and associated with the infraorbital sensory canal.
ZFA:0000489
TAO:0000376
zebrafish_anatomy
ZFA:0000376
infraorbital
Dermal bone that is situated under or posterior to the eye and associated with the infraorbital sensory canal.
GOC:mh
ORCiD:0000-0001-9114-8737
true
true
Portion of the lateral forebrain bundle that lies in the diencephalon.
TAO:0000379
lateral forebrain bundles diencephalon
zebrafish_anatomy
ZFA:0000379
lateral forebrain bundle diencephalon
Portion of the lateral forebrain bundle that lies in the diencephalon.
GOC:cvs
ORCiD:0000-0002-2244-7917
lateral forebrain bundles diencephalon
TAO:0000380
lateral lemniscus nuclei
zebrafish_anatomy
ZFA:0000380
lateral lemniscus nucleus
lateral lemniscus nuclei
TAO:0000381
lateral line sensory nuclei
zebrafish_anatomy
ZFA:0000381
lateral line sensory nucleus
lateral line sensory nuclei
Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue.
CARO:0000040
TAO:0000382
acellular anatomical structures
zebrafish_anatomy
ZFA:0000382
acellular anatomical structure
Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue.
GOC:mh
ORCiD:0000-0001-9114-8737
acellular anatomical structures
Extraocular muscle that runs parallel to the long axis of the fish and inserts on the caudal side of the eye at the sclera-corneal . The lateral rectus muscles originate substantially posterior to the other rectus muscles. The lateral rectus is innervated by the abducens nerve. The unsegmented paraxial head mesoderm contributes to the lateral rectus.
TAO:0000383
lateral recti
posterior rectus
zebrafish_anatomy
ZFA:0000383
Mature form at Hatching:Pec-fin.
lateral rectus
Extraocular muscle that runs parallel to the long axis of the fish and inserts on the caudal side of the eye at the sclera-corneal . The lateral rectus muscles originate substantially posterior to the other rectus muscles. The lateral rectus is innervated by the abducens nerve. The unsegmented paraxial head mesoderm contributes to the lateral rectus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111205-9
lateral recti
posterior rectus
ZFIN:ZDB-PUB-970121-6
Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics.
TAO:0000384
levators arcus palatini
zebrafish_anatomy
ZFA:0000384
levator arcus palatini
Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
levators arcus palatini
The lymphatic system consists of blind-ended vessels, fluid and macromolecules collected from interstitial tissue space that serve as a conduit for the development and transport of lymphoid cells.
TAO:0000385
zebrafish_anatomy
ZFA:0000385
lymphatic system
The lymphatic system consists of blind-ended vessels, fluid and macromolecules collected from interstitial tissue space that serve as a conduit for the development and transport of lymphoid cells.
ZFIN:ZDB-PUB-130322-28
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
TAO:0000386
maculae
sensory macula
sensory patch
zebrafish_anatomy
ZFA:0000386
macula
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
maculae
motor nucleus X
motor nucleus of X
nX
nucleus motorius of nervi vagi
zebrafish_anatomy
vagal lobe
ZFA:0000387
This term split from vagal lobe. Merged before 1996.
motor nucleus of vagal nerve
Brain structure which is part of the vestibulolateralis lobe of the cerebellum. The medial caudal lobe receives primary octaval (presumably vestibular) as well as lateral line projections. From Neuroanatomy of the Zebrafish Brain.
TAO:0000388
caudal lobe of cerebellum
lobus caudalis cerebelli
zebrafish_anatomy
ZFA:0000388
medial caudal lobe
Brain structure which is part of the vestibulolateralis lobe of the cerebellum. The medial caudal lobe receives primary octaval (presumably vestibular) as well as lateral line projections. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000389
zebrafish_anatomy
ZFA:0000389
medial funicular nucleus medulla oblongata
Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000390
medial preglomerular nuclei
zebrafish_anatomy
ZFA:0000390
medial preglomerular nucleus
Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
medial preglomerular nuclei
Telencephalic nucleus which is medially located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000391
Dm
area dorsalis telencephali, zona medialis
medial zone of D
medial zone of dorsal telencephalic area
zebrafish_anatomy
ZFA:0000391
medial zone of dorsal telencephalon
Telencephalic nucleus which is medially located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Dm
ZFIN:ZDB-PUB-150226-6
Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000392
zebrafish_anatomy
ZFA:0000392
median tuberal portion
Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
A mesh-like cell arrangement, less compact than an epithelium.
TAO:0000393
zebrafish_anatomy
ZFA:0000393
mesenchyme
A mesh-like cell arrangement, less compact than an epithelium.
ZFIN:ZDB-PUB-961014-576
Portion of tissue which is the outermost layer of the corpus cerebelli and consists largely of axons and dendrites. Other cell types such as stellate and basket neurons are also found in the molecular layer.
TAO:0000394
zebrafish_anatomy
ZFA:0000394
molecular layer corpus cerebelli
Portion of tissue which is the outermost layer of the corpus cerebelli and consists largely of axons and dendrites. Other cell types such as stellate and basket neurons are also found in the molecular layer.
GOC:mh
ORCiD:0000-0001-9114-8737
Muscle pioneer cell part of somite 2.
TAO:0000395
muscle pioneers somite 2
zebrafish_anatomy
ZFA:0000395
muscle pioneer somite 2
Muscle pioneer cell part of somite 2.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 2
A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS).
TAO:0000396
zebrafish_anatomy
ZFA:0000396
nervous system
A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS).
GOC:mh
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is part of the caudal tuberculum. In trout the nucleus subglomerulosis receives gustatory information.
TAO:0000397
zebrafish_anatomy
ZFA:0000397
nucleus subglomerulosis
Diencephalic nucleus which is part of the caudal tuberculum. In trout the nucleus subglomerulosis receives gustatory information.
GOC:cvs
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
PMID:11923003
The nucleus isthmi is a hindbrain nucleus located in the tegmentum of rhombomere 1 close to the secondary gustatory nucleus. It projects to and receives excitatory visual input from the ipsilateral optic tectum and the parvocellular and/or magnocellular superficial pretectal nucleus.
TAO:0000398
zebrafish_anatomy
ZFA:0000398
nucleus isthmi
The nucleus isthmi is a hindbrain nucleus located in the tegmentum of rhombomere 1 close to the secondary gustatory nucleus. It projects to and receives excitatory visual input from the ipsilateral optic tectum and the parvocellular and/or magnocellular superficial pretectal nucleus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-100601-20
Nucleus that lies rostral to the isthmic primary nucleus.
TAO:0000399
secondary gustatory nucleus trigeminal nuclei
zebrafish_anatomy
ZFA:0000399
secondary gustatory nucleus trigeminal nucleus
Nucleus that lies rostral to the isthmic primary nucleus.
ZFIN:ZDB-PUB-961014-1280
secondary gustatory nucleus trigeminal nuclei
One of eight distinct lateral lines in the 4-day larva positioned dorsal to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000400
supratemporal lateral line
zebrafish_anatomy
ZFA:0000400
occipital lateral line
One of eight distinct lateral lines in the 4-day larva positioned dorsal to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
TAO:0000401
cranial nerve VIII sensory nucleus
octaval nerve sensory nuclei
zebrafish_anatomy
ZFA:0000401
octaval nerve sensory nucleus
octaval nerve sensory nuclei
Brain structure which is the paired anteriormost part of the telencephalon and are connected to the telencephalon by two tracts carrying secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. The olfactory bulb is a paired structure.
TAO:0000402
bulbus olfactorius
olfactory lobe
zebrafish_anatomy
ZFA:0000402
olfactory bulb
Brain structure which is the paired anteriormost part of the telencephalon and are connected to the telencephalon by two tracts carrying secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. The olfactory bulb is a paired structure.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
bulbus olfactorius
ZFIN:ZDB-PUB-961014-1280
Female reproductive organ. The ovary is a bilobed cavitated organ located ventral to the swim bladder.
TAO:0000403
ovaries
zebrafish_anatomy
ZFA:0000403
ovary
Female reproductive organ. The ovary is a bilobed cavitated organ located ventral to the swim bladder.
GOC:cvs
GOC:mh
ISBN:0199638098
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ovaries
Diencephalic nucleus that is part of the synencephalon and is located adjacent to the caudal commissure. From Neuroanatomy of the Zebrafish Brain.
TAO:0000404
zebrafish_anatomy
ZFA:0000404
paracommissural nucleus
Diencephalic nucleus that is part of the synencephalon and is located adjacent to the caudal commissure. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Cranial nerve which innervates muscles of the ocular motor system. The oculomotor nerve innervates the inferior oblique, inferior rectus, medial rectus and superior rectus extraocular muscles.
TAO:0000405
CN-III
occulomotor
oculomotor nerve
zebrafish_anatomy
ZFA:0000405
cranial nerve III
Cranial nerve which innervates muscles of the ocular motor system. The oculomotor nerve innervates the inferior oblique, inferior rectus, medial rectus and superior rectus extraocular muscles.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-131119-12
Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000406
parvocellular superficial pretectal nuclei
zebrafish_anatomy
ZFA:0000406
parvocellular superficial pretectal nucleus
Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
parvocellular superficial pretectal nuclei
Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones.
TAO:0000407
pectoral girdles
zebrafish_anatomy
ZFA:0000407
pectoral girdle
Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones.
TAO:WD
pectoral girdles
Diencephalic nucleus which is located between the ventral thalamus and the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000408
periventricular nucleus of posterior tuberculum
zebrafish_anatomy
ZFA:0000408
periventricular nucleus of caudal tuberculum
Diencephalic nucleus which is located between the ventral thalamus and the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
true
Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts.
TAO:0000410
postcleithra
zebrafish_anatomy
ZFA:0000410
postcleithrum
Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts.
GOC:cvs
ORCiD:0000-0002-2244-7917
postcleithra
Is an otic epithelium that will mature into the posterior crista.
TAO:0000411
posterior crista primordia
zebrafish_anatomy
ZFA:0000411
posterior crista primordium
Is an otic epithelium that will mature into the posterior crista.
GOC:ymb
ORCiD:0000-0002-9900-7880
posterior crista primordia
Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the posterior semicircular canal.
TAO:0000412
zebrafish_anatomy
posterior semicircular canal primordia
posterior semicircular canal primordium
ZFA:0000412
otic vesicle posterior protrusion
Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the posterior semicircular canal.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-090330-11
posterior semicircular canal primordia
The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).
TAO:0000413
gonads
zebrafish_anatomy
mature gonad
ZFA:0000413
gonad
The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).
GOC:mh
ORCiD:0000-0001-9114-8737
gonads
Embryonic structure that is fated to become cephalic mesoderm.
TAO:0000414
zebrafish_anatomy
ZFA:0000414
presumptive cephalic mesoderm
Embryonic structure that is fated to become cephalic mesoderm.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Sphincter at the junction of the esophagus and pneumatic duct.
TAO:0000415
oesophagial sphincter
zebrafish_anatomy
ZFA:0000415
esophageal sphincter
Sphincter at the junction of the esophagus and pneumatic duct.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Presumptive structure fated to become endoderm. Determined by fate mapping.
TAO:0000416
zebrafish_anatomy
ZFA:0000416
presumptive endoderm
Presumptive structure fated to become endoderm. Determined by fate mapping.
ZFIN:ZDB-PUB-961014-608
Embryonic structure part of the posterior presumptive neural plate that is fated to become the spinal cord.
TAO:0000417
presumptive spinal cord neural keel
presumptive spinal cord neural plate
presumptive spinal cord neural rod
zebrafish_anatomy
ZFA:0000417
presumptive spinal cord
Embryonic structure part of the posterior presumptive neural plate that is fated to become the spinal cord.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure that is the dorsal part of the diencephalon, caudal to the telencephalon, rostral to the midbrain optic tectum; the major sensory input to the pretectum is visual. From The Laboratory Fish.
TAO:0000418
zebrafish_anatomy
ZFA:0000418
pretectum
Multi-tissue structure that is the dorsal part of the diencephalon, caudal to the telencephalon, rostral to the midbrain optic tectum; the major sensory input to the pretectum is visual. From The Laboratory Fish.
GOC:mh
ISBN:0125296509
ORCiD:0000-0001-9114-8737
Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves.
TAO:0000419
pterosphenoids
zebrafish_anatomy
ZFA:0000419
pterosphenoid
Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves.
GOC:mh
ORCiD:0000-0001-9114-8737
pterosphenoids
TAO:0000420
renal arteries
zebrafish_anatomy
ZFA:0000420
renal artery
renal arteries
Reticular formation is a complex network of neurons and diffuse nuclei that extends from the spinal cord centrally along the length of the brain to the mesencephalon. It s a dense, almost impenetrable network of seemingly random scattered nerve cells. The reticular formation integrates sensory inputs.
TAO:0000421
zebrafish_anatomy
ZFA:0000421
reticular formation
Reticular formation is a complex network of neurons and diffuse nuclei that extends from the spinal cord centrally along the length of the brain to the mesencephalon. It s a dense, almost impenetrable network of seemingly random scattered nerve cells. The reticular formation integrates sensory inputs.
ISBN:0865777101
The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly.
TAO:0000422
retroarticulars
zebrafish_anatomy
ZFA:0000422
retroarticular
The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly.
GOC:ymb
ORCiD:0000-0002-9900-7880
retroarticulars
Vein that joins with the posterior cardinal vein to form the common cardinal vein. The anterior cardinal vein (ACV) connects to the primordial hindbrain channel at early stages. At later stages the posterior cerebral vein (PCeV) and the pectoral vein (PV) drain into ACV. The rostral portion of the ACV connects to the primary head sinus (PHS) at 2.5dpf, the PHS is sometimes considered an extension of the ACV.
TAO:0000423
ACV
rostral cardinal vein
zebrafish_anatomy
ZFA:0000423
anterior cardinal vein
Vein that joins with the posterior cardinal vein to form the common cardinal vein. The anterior cardinal vein (ACV) connects to the primordial hindbrain channel at early stages. At later stages the posterior cerebral vein (PCeV) and the pectoral vein (PV) drain into ACV. The rostral portion of the ACV connects to the primary head sinus (PHS) at 2.5dpf, the PHS is sometimes considered an extension of the ACV.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000424
opercular lateral lines
zebrafish_anatomy
ZFA:0000424
opercular lateral line
One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
opercular lateral lines
Cranial nerve which enters the brain between cranial nerves VI and VII and projects to a dorsal medullary area between cerebellum and vagal lobe. Contains afferents and sensory efferents to the anterior lateral line ganglia. From Neuroanatomy of the Zebrafish Brain.
TAO:0000425
ALLn
nervi lineae lateralis anterioris
rostral lateral line nerve
zebrafish_anatomy
ZFA:0000425
anterior lateral line nerve
Cranial nerve which enters the brain between cranial nerves VI and VII and projects to a dorsal medullary area between cerebellum and vagal lobe. Contains afferents and sensory efferents to the anterior lateral line ganglia. From Neuroanatomy of the Zebrafish Brain.
GOC:ymb
ISBN:3764351209
ORCiD:0000-0002-9900-7880
Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000426
anterior parvocellular preoptic nucleus
rostral parvocellular preoptic nuclei
zebrafish_anatomy
ZFA:0000426
rostral parvocellular preoptic nucleus
Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
rostral parvocellular preoptic nuclei
Diencephalic nucleus which is located in the anterior portion of the dorsal thalamus.
TAO:0000427
anterior thalamic nucleus
nucleus anterior thalami
zebrafish_anatomy
ZFA:0000427
rostral thalamic nucleus
Diencephalic nucleus which is located in the anterior portion of the dorsal thalamus.
GOC:mh
ORCiD:0000-0001-9114-8737
Otolith organ comprised of the macula saccule and sagitta. The lagena is part of the pars inferior. The saccule functions in the detection of sound and movement.
TAO:0000428
sacculus
zebrafish_anatomy
ZFA:0000428
saccule
Otolith organ comprised of the macula saccule and sagitta. The lagena is part of the pars inferior. The saccule functions in the detection of sound and movement.
GOC:ymb
ORCiD:0000-0002-9900-7880
The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process.
TAO:0000429
zebrafish_anatomy
ZFA:0000429
scaphium
The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process.
GOC:mh
ORCiD:0000-0001-9114-8737
White matter connecting the primary gustatory nuclei to the secondary gustatory nucleus in the isthmus.
TAO:0000430
zebrafish_anatomy
ZFA:0000430
secondary gustatory tract
White matter connecting the primary gustatory nuclei to the secondary gustatory nucleus in the isthmus.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-1280
Fluid-filled semicircular tubes, arranged orthogonally to each other in the inner ear. Each canal is associated with a crista that detects angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
TAO:0000431
scc
semicircular canals
semicircular duct
zebrafish_anatomy
ZFA:0000431
semicircular canal
Fluid-filled semicircular tubes, arranged orthogonally to each other in the inner ear. Each canal is associated with a crista that detects angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
semicircular canals
true
TAO:0000433
sensory trigeminal nuclei
zebrafish_anatomy
NVs
ZFA:0000433
sensory trigeminal nucleus
sensory trigeminal nuclei
TAO:0000434
zebrafish_anatomy
ZFA:0000434
skeletal system
Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which the axons cross the midline and after which the structure is termed the optic tract.
TAO:0000435
CN-II
optic
optic nerve
zebrafish_anatomy
ZFA:0000435
cranial nerve II
Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which the axons cross the midline and after which the structure is termed the optic tract.
GOC:mh
ORCiD:0000-0001-9114-8737
Organ that filters the blood removing defective blood cells. The spleen is a dark red organ, located in the peritoneal cavity, adjacent to one of the liver lobes. The spleen consists of red pulp composed of erythrocytes and thrombocytes and white pulp, composed of macrophages, reticular cells and reticulin fibers.
TAO:0000436
zebrafish_anatomy
ZFA:0000436
spleen
Organ that filters the blood removing defective blood cells. The spleen is a dark red organ, located in the peritoneal cavity, adjacent to one of the liver lobes. The spleen consists of red pulp composed of erythrocytes and thrombocytes and white pulp, composed of macrophages, reticular cells and reticulin fibers.
ZFIN:ZDB-PUB-110609-55
ZFA:0001076
TAO:0002121
zebrafish_anatomy
ZFA:0000437
stomach
true
Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the dorsal aorta passes.
ZFA:0000562
TAO:0000438
parhyural
phy
zebrafish_anatomy
ZFA:0000438
parhypural
Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the dorsal aorta passes.
ZFIN:ZDB-PUB-011008-1
Ventral, superficial, paired muscle that originates from the posterior part of the protractor ishii tendon and the midline. At the midline the paired muscles contact each other. These are short muscles that attach to all pelvic fin rays except ray 1 and ray 2.
TAO:0000439
abductor superficialis pelvicus
superficial pelvic abductors
zebrafish_anatomy
ZFA:0000439
superficial pelvic abductor
Ventral, superficial, paired muscle that originates from the posterior part of the protractor ishii tendon and the midline. At the midline the paired muscles contact each other. These are short muscles that attach to all pelvic fin rays except ray 1 and ray 2.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
abductor superficialis pelvicus
ZFIN:ZDB-PUB-171118-8
superficial pelvic abductors
Hindbrain nucleus that is located in ventral rhombomeres 1-3 and gives rise to ascending fibers innervating most areas of the brain. Early in development, both the superior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections of superior raphe nucleus restricted to anterior.
TAO:0000440
anterior raphe nucleus
zebrafish_anatomy
dorsal raphe nucleus
ZFA:0000440
May be homologous to the dorsal raphe nucleus of human mouse and rat. ZDB-PUB-081008-18.
superior raphe nucleus
Hindbrain nucleus that is located in ventral rhombomeres 1-3 and gives rise to ascending fibers innervating most areas of the brain. Early in development, both the superior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections of superior raphe nucleus restricted to anterior.
ZFIN:ZDB-PUB-081114-19
Diencephalic nucleus that is part of the preoptic area and is ventrolateral to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000441
zebrafish_anatomy
ZFA:0000441
suprachiasmatic nucleus
Diencephalic nucleus that is part of the preoptic area and is ventrolateral to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001).
TAO:0000442
sn
zebrafish_anatomy
ZFA:0000442
supraneural
Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001).
GOC:mh
ORCiD:0000-0001-9114-8737
One of eight distinct lateral lines in the 4-day larva consisting of three neuromast positioned superior to the eye. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000443
supraorbital lateral lines
supraorbital line
zebrafish_anatomy
ZFA:0000443
supraorbital lateral line
One of eight distinct lateral lines in the 4-day larva consisting of three neuromast positioned superior to the eye. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
supraorbital lateral lines
supraorbital line
ZFIN:ZDB-PUB-000523-3
TAO:0000444
hyopalatine
suspensoria
zebrafish_anatomy
ZFA:0000444
suspensorium
Multi-tissue structure that is the dorsal part of the midbrain and develops from the alar plate and is the most complex layered structure in the zebrafish brain.
ZFA:0001353
TAO:0000445
dorsal midbrain
mesencephalic tectum
tectal lobe
tectum
tectum opticum
zebrafish_anatomy
ZFA:0000445
optic tectum
Multi-tissue structure that is the dorsal part of the midbrain and develops from the alar plate and is the most complex layered structure in the zebrafish brain.
GOC:mh
ORCiD:0000-0001-9114-8737
tectum
ZFIN:ZDB-PUB-961014-576
tectum opticum
ZFIN:ZDB-PUB-961014-1280
TAO:0000446
zebrafish_anatomy
ZFA:0000446
tecto-bulbar tract
Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus.
TAO:0000447
zebrafish_anatomy
tela choroidea
ZFA:0000447
tela chorioidea
Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus.
ISBN:0030223695
ISBN:0683014617
Diencephalic nucleus which is located ventral to the medial preglomerular nucleus in the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000448
zebrafish_anatomy
ZFA:0000448
tertiary gustatory nucleus
Diencephalic nucleus which is located ventral to the medial preglomerular nucleus in the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes.
TAO:0000449
longitudinal torus
tori longitudinalis
zebrafish_anatomy
ZFA:0000449
torus longitudinalis
Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes.
GOC:mh
ORCiD:0000-0001-9114-8737
tori longitudinalis
TAO:0000450
motor nucleus IV
nIV
zebrafish_anatomy
ZFA:0000450
trochlear motor nucleus
Portion of tissue, located on the upper jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration.
TAO:0000451
maxillary valve
upper semilunar valve
zebrafish_anatomy
breathing valve
buccal valve
upper internal lip
ZFA:0000451
upper oral valve
Portion of tissue, located on the upper jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration.
ZFIN:ZDB-PUB-060921-12
upper semilunar valve
ZFIN:ZDB-PUB-060921-12
upper internal lip
ZFIN:ZDB-PUB-060921-12
The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990).
TAO:0000452
zebrafish_anatomy
ZFA:0000452
urohyal
The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990).
GOC:mh
ORCiD:0000-0001-9114-8737
Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons. The root is typically found at either rhombomere 7 or rhombomere 8.
TAO:0000453
CN-X
vagal nerve
vagus nerve
zebrafish_anatomy
ZFA:0000453
cranial nerve X
Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons. The root is typically found at either rhombomere 7 or rhombomere 8.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040109-20
ZFIN:ZDB-PUB-110727-5
Diencephalic nucleus that is part of the central pretectum and is ventromedial to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. The ventral accessory optic nucleus is very large in zebrafish as compared to other cyprinids. From Neuroanatomy of the Zebrafish Brain.
TAO:0000454
zebrafish_anatomy
ZFA:0000454
ventral accessory optic nucleus
Diencephalic nucleus that is part of the central pretectum and is ventromedial to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. The ventral accessory optic nucleus is very large in zebrafish as compared to other cyprinids. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Paired, deep caudal fin muscles that originate from the 30th vertebra then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays.
TAO:0000455
flexor caudalis ventralis superioris
zebrafish_anatomy
CVS
ventral flexor
ZFA:0000455
superior caudal ventral flexor
Paired, deep caudal fin muscles that originate from the 30th vertebra then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Periventricular nucleus which lies rostral to the anterior commissure of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000456
area ventralis telencephali, nucleus ventralis
ventral nucleus of V
zebrafish_anatomy
ventral division of ventral telencephalic area
ZFA:0000456
ventral nucleus of ventral telencephalon
Periventricular nucleus which lies rostral to the anterior commissure of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. The ventral rectus is innervated by the oculomotor nerve.
TAO:0000457
inferior rectus
ventral recti
zebrafish_anatomy
ZFA:0000457
Mature form at Larval:Protruding-mouth.
ventral rectus
Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. The ventral rectus is innervated by the oculomotor nerve.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111205-9
inferior rectus
ZFIN:ZDB-PUB-110512-18
ventral recti
TAO:0000458
prethalamus
zebrafish_anatomy
ZFA:0000458
ventral thalamus
prethalamus
ZFIN:ZDB-PUB-060207-11
TAO:0000459
zebrafish_anatomy
ZFA:0000459
ventromedial thalamic nucleus
zebrafish_anatomy
ZFA:0000460
Part of axon so domain of GO celular component.
Mauthner axon
true
A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle.
TAO:0000461
Weberian ossicles
zebrafish_anatomy
ZFA:0000461
Weberian ossicle
A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle.
ZFIN:ZDB-PUB-011008-1
Weberian ossicles
Hyoid muscle that originates at the first branchiostegal ray and inserts in the mesial aponeurosis, meeting its contralateral counterpart. The abductor hyohyoid is responsible for expansion of the branchiostegal membrane.
TAO:0000462
abductors hyohyoid
hyohyoideus abductor
zebrafish_anatomy
ZFA:0000462
abductor hyohyoid
Hyoid muscle that originates at the first branchiostegal ray and inserts in the mesial aponeurosis, meeting its contralateral counterpart. The abductor hyohyoid is responsible for expansion of the branchiostegal membrane.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-080306-33
abductors hyohyoid
TAO:0000463
adductors
zebrafish_anatomy
ZFA:0000463
branchial adductor
adductors
One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000464
otic lateral lines
zebrafish_anatomy
ZFA:0000464
otic lateral line
One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
otic lateral lines
Is a dorsal, paired hyoid muscle that moves the auditory capsules with the opercles.
TAO:0000465
adductor opercula
adductor operculae
zebrafish_anatomy
ZFA:0000465
adductor operculi
Is a dorsal, paired hyoid muscle that moves the auditory capsules with the opercles.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
adductor operculae
Series of muscles that have an anterior attachment at posteriorlateral base of each ray and posterior attachment at the haemal spines. These muscles act in opposition to the anal erectors to lower the anal fin rays.
TAO:0000466
anal depressors
zebrafish_anatomy
depressores anales
ZFA:0000466
anal depressor
Series of muscles that have an anterior attachment at posteriorlateral base of each ray and posterior attachment at the haemal spines. These muscles act in opposition to the anal erectors to lower the anal fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
anal depressors
depressores anales
ZFIN:ZDB-PUB-171118-8
Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired.
TAO:0000467
articular
zebrafish_anatomy
ZFA:0000467
anguloarticular
Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-192
Is an otic epithelium that will mature into the anterior crista.
TAO:0000468
anterior crista primordia
zebrafish_anatomy
ZFA:0000468
anterior crista primordium
Is an otic epithelium that will mature into the anterior crista.
GOC:ymb
ORCiD:0000-0002-9900-7880
anterior crista primordia
Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the anterior semicircular canal.
TAO:0000469
zebrafish_anatomy
anterior semicircular canal primordia
anterior semicircular canal primordium
ZFA:0000469
otic vesicle anterior protrusion
Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the anterior semicircular canal.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-090330-11
anterior semicircular canal primordia
Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, p. 34 in Atlas of Early Zebrafish Brain Development.
TAO:0000470
area praeoptica
area preoptica
preoptic region
zebrafish_anatomy
ZFA:0000470
preoptic area
Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, p. 34 in Atlas of Early Zebrafish Brain Development.
GOC:mh
ISBN:0444517383
ORCiD:0000-0001-9114-8737
Cavitated compound organ that receives inflow of deoxygenated blood and delivers it to a muscular cardiac ventricle. Valves are present to direct flow. There are only two chambers present in the fish heart.
TAO:0000471
zebrafish_anatomy
ZFA:0000471
atrium
Cavitated compound organ that receives inflow of deoxygenated blood and delivers it to a muscular cardiac ventricle. Valves are present to direct flow. There are only two chambers present in the fish heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-020122-4
Large median unpaired cartilage bone that contacts the exoccipital, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials.
TAO:0000472
zebrafish_anatomy
ZFA:0000472
basioccipital
Large median unpaired cartilage bone that contacts the exoccipital, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
Muscle system in the trunk.
TAO:0000473
body musculature
zebrafish_anatomy
ZFA:0000473
trunk musculature
Muscle system in the trunk.
GOC:cvs
ORCiD:0000-0002-2244-7917
Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal.
TAO:0000474
opisthotic
zebrafish_anatomy
ZFA:0000474
intercalar
Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal.
GOC:mh
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is located anterior to the caudal tuberal nucleus and contains tyrosine hydroxylase immunoreactive CSF contacting bipolar cells.
TAO:0000475
PVO
zebrafish_anatomy
ZFA:0000475
paraventricular organ
Diencephalic nucleus which is located anterior to the caudal tuberal nucleus and contains tyrosine hydroxylase immunoreactive CSF contacting bipolar cells.
ZFIN:ZDB-PUB-001220-2
Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal.
TAO:0000476
branchiostegal rays
zebrafish_anatomy
ZFA:0000476
branchiostegal ray
Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal.
GOC:mh
ORCiD:0000-0001-9114-8737
branchiostegal rays
Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein.
TAO:0000477
PCV
axial vein
caudal cardinal veins
postcardinal vein
zebrafish_anatomy
ZFA:0000477
posterior cardinal vein
Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
true
Brainstem tract which carries cerebellar afferents from the dorsal tegmental nucleus and nucleus lateralis valvulae. Fuses with the rostral mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000479
posterior mesencephalo-cerebellar tract
zebrafish_anatomy
ZFA:0000479
caudal mesencephalo-cerebellar tract
Brainstem tract which carries cerebellar afferents from the dorsal tegmental nucleus and nucleus lateralis valvulae. Fuses with the rostral mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain.
TAO:0000480
nucleus octavolateralis caudalis
zebrafish_anatomy
ZFA:0000480
caudal octavolateralis nucleus
Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Preglomerular nucleus which is the most caudomedial of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000481
nucleus praeglomerulosus caudalis
zebrafish_anatomy
ZFA:0000481
caudal preglomerular nucleus
Preglomerular nucleus which is the most caudomedial of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is located posterior to the paraventricular organ.
TAO:0000482
posterior tuberal nucleus
zebrafish_anatomy
ZFA:0000482
caudal tuberal nucleus
Diencephalic nucleus which is located posterior to the paraventricular organ.
ZFIN:ZDB-PUB-001220-2
true
TAO:0000484
coeliac-mesenteric artery
zebrafish_anatomy
ZFA:0000484
celiacomesenteric artery
Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000485
central nucleus inferior lobes
central nucleus of the inferior lobe
nucleus centralis lobi inferioris hypothalami
zebrafish_anatomy
ZFA:0000485
central nucleus inferior lobe
Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
central nucleus inferior lobes
Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal.
TAO:0000486
post parietal
zebrafish_anatomy
ZFA:0000486
parietal bone
Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111111-5
Telencephalic nucleus which is centrally located and is surrounded by the other four dorsal telencephalic regions. From Neuroanatomy of the Zebrafish Brain.
TAO:0000487
Dc
area dorsalis telencephali, zona centralis
central zone of D
zebrafish_anatomy
ZFA:0000487
central zone of dorsal telencephalon
Telencephalic nucleus which is centrally located and is surrounded by the other four dorsal telencephalic regions. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Dc
ZFIN:ZDB-PUB-150226-6
Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials.
TAO:0000488
ceratobranchial bones
zebrafish_anatomy
ZFA:0000488
ceratobranchial bone
Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
ceratobranchial bones
true
Cerebellar commissure which is located within the ventral boundary zone between valvula and corpus cerebelli. From Neuroanatomy of the Zebrafish Brain.
TAO:0000490
cerebellar commissure
zebrafish_anatomy
ZFA:0000490
commissura cerebelli
Cerebellar commissure which is located within the ventral boundary zone between valvula and corpus cerebelli. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Commissure in the ventral diencephalon that lies rostral to the ventral flexure and caudal of the posterior tuberal nucleus. Axons from the supraoptic tract extend across the hypothalamus and enter this commissure.
TAO:0000491
commissura tuberculi posterioris
commissure of the posterior tuberculum
zebrafish_anatomy
CPT
Ctub
ZFA:0000491
commissure of the caudal tuberculum
Commissure in the ventral diencephalon that lies rostral to the ventral flexure and caudal of the posterior tuberal nucleus. Axons from the supraoptic tract extend across the hypothalamus and enter this commissure.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1268
CPT
ZFIN:ZDB-PUB-961014-1268
Ctub
ZFIN:ZDB-PUB-120424-30
TAO:0000492
zebrafish_anatomy
ZFA:0000492
coracoradialis
TAO:0000493
zebrafish_anatomy
ZFA:0000493
decussation of medial funicular nucleus
TAO:0000494
deep white zones
zebrafish_anatomy
ZFA:0000494
deep white zone
deep white zones
Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone.
TAO:0000495
dermosphenotic
zebrafish_anatomy
ZFA:0000495
infraorbital 5
Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types.
CARO:0000024
TAO:0000496
organ
zebrafish_anatomy
ZFA:0000496
compound organ
Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types.
GOC:mh
ORCiD:0000-0001-9114-8737
Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium, lies mostly parallel to the pelvic fin rays and attaches and inserts on the bases of all the pelvic fin rays.
TAO:0000497
adductor profundus pelvicus
pelvic adductors profundus
zebrafish_anatomy
ZFA:0000497
pelvic adductor profundus
Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium, lies mostly parallel to the pelvic fin rays and attaches and inserts on the bases of all the pelvic fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
adductor profundus pelvicus
ZFIN:ZDB-PUB-171118-8
pelvic adductors profundus
Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction.
TAO:0000498
dilatator opercula
zebrafish_anatomy
dilator opercula
dilators operculi
ZFA:0000498
dilatator operculi
Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
ZFIN:ZDB-PUB-080306-33
dilators operculi
The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke.
TAO:0000499
arrector dorsalis
dorsal arrectors
zebrafish_anatomy
ZFA:0000499
Acts as antagonist to the ventral arrector ZDB-PUB-050920.
dorsal arrector
The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
arrector dorsalis
ZFIN:ZDB-PUB-050920-7
dorsal arrectors
Dorsal fin muscle that moves individual rays the dorsal fin to an erect position. Antagonistic to dorsal depressor muscle. There is one dorsal erector for each dorsal fin lepidotrichium.
TAO:0000500
dorsal erectors
erector dorsalis
zebrafish_anatomy
ZFA:0000500
dorsal erector
Dorsal fin muscle that moves individual rays the dorsal fin to an erect position. Antagonistic to dorsal depressor muscle. There is one dorsal erector for each dorsal fin lepidotrichium.
GOC:cvs
ORCiD:0000-0002-2244-7917
dorsal erectors
TAO:0000501
funiculus dorsalis
zebrafish_anatomy
ZFA:0000501
dorsal funiculus
Trigeminal motor nucleus that is located dorsal to the lateral longitudinal fascicle.
TAO:0000502
zebrafish_anatomy
ZFA:0000502
dorsal motor nucleus trigeminal nerve
Trigeminal motor nucleus that is located dorsal to the lateral longitudinal fascicle.
ISBN:3764351209
TAO:0000503
dorsal oblique branchial muscles
zebrafish_anatomy
ZFA:0000503
dorsal oblique branchial muscle
dorsal oblique branchial muscles
TAO:0000504
dorsal retractors
zebrafish_anatomy
ZFA:0000504
dorsal retractor
dorsal retractors
Brain structure which is the dorsal part of the telencephalon, most of which is developmentally everted such that the ependymal lining of the unpaired median ventricle becomes located at the apparent periphery of the telencephalon. From Neuroanatomy of the Zebrafish Brain.
ZFA:0007007
TAO:0000505
area dorsalis telencephali
dorsal telencephalic area
pallium
zebrafish_anatomy
ZFA:0000505
dorsal telencephalon
Brain structure which is the dorsal part of the telencephalon, most of which is developmentally everted such that the ependymal lining of the unpaired median ventricle becomes located at the apparent periphery of the telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-110119-16
ZFIN:ZDB-PUB-120111-2
ZFIN:ZDB-PUB-961014-1280
Telencephalic nucleus which is the most dorsally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000506
Dd
area dorsalis telencephali, zona dorsalis
dorsal zone of D
dorsal zone of dorsal telencephalic area
zebrafish_anatomy
ZFA:0000506
dorsal zone of dorsal telencephalon
Telencephalic nucleus which is the most dorsally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Dd
ZFIN:ZDB-PUB-150226-6
Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally.
TAO:0000507
epineurals
zebrafish_anatomy
ZFA:0000507
epineural
Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally.
GOC:mh
ORCiD:0000-0001-9114-8737
epineurals
Internal skeletal supports of the pelvic fin.
TAO:0000508
pelvic radials
zebrafish_anatomy
ZFA:0000508
pelvic radial
Internal skeletal supports of the pelvic fin.
TAO:curator
pelvic radials
Brain structure which is part of the diencephalon and consists of the dorsal and ventral nuclei of the habenula, and two dorsal outgrowths, the epiphysis and the saccus dorsalis. From Neuroanatomy of the Zebrafish Brain.
TAO:0000509
zebrafish_anatomy
ZFA:0000509
epithalamus
Brain structure which is part of the diencephalon and consists of the dorsal and ventral nuclei of the habenula, and two dorsal outgrowths, the epiphysis and the saccus dorsalis. From Neuroanatomy of the Zebrafish Brain.
ISBN:3764351209
TAO:0000510
external levators
zebrafish_anatomy
ZFA:0000510
external levatores
external levators
Muscle system surrounding the eye. The extraocular musculature is derived from the neural crest. The extraocular muscles assume their adult configuration between 66 and 72 hpf. They differentiate contemporaneously with the eye vesicle, form precise anatomic attachments to sclera and bone, and are innervated by cranial nerves 3, 4, and 6.
TAO:0000511
zebrafish_anatomy
ocular musculature
ZFA:0000511
extraocular musculature
Muscle system surrounding the eye. The extraocular musculature is derived from the neural crest. The extraocular muscles assume their adult configuration between 66 and 72 hpf. They differentiate contemporaneously with the eye vesicle, form precise anatomic attachments to sclera and bone, and are innervated by cranial nerves 3, 4, and 6.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110512-18
ZFIN:ZDB-PUB-970121-6
Hindbrain nucleus that doesn't project to the spinal cord.
TAO:0000512
LVII
lobus facialis
zebrafish_anatomy
tuberculum impar of Herrick
ZFA:0000512
facial lobe
Hindbrain nucleus that doesn't project to the spinal cord.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-970218-12
LVII
ZFIN:ZDB-PUB-961014-1280
Fast muscle cell located in somite 1.
TAO:0000513
fast muscle cells somite 1
fast muscle fiber somite 1
zebrafish_anatomy
ZFA:0000513
fast muscle cell somite 1
Fast muscle cell located in somite 1.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 1
Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly.
TAO:0000514
zebrafish_anatomy
ZFA:0000514
frontal bone
Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly.
GOC:mh
ORCiD:0000-0001-9114-8737
true
Tissue located on the ventral side of the optic tectum, that contains the cell bodies of most tectal neurons. It is adjacent to the tectal ventricle and opposite the eminentia granularis of the cerebellum. It also contains a neurogenic niche and has hypothalamic inputs. The dendrites of neurons from the periventricular grey zones project their apical dendrites to the stratum opticum and stratum fibrosum et griseum superficale and synapse with retinal axons that project to these layers.
ZFA:0001352
TAO:0000516
TAO:0001352
PGZ
periventricular gray zone
periventricular grey zones
periventricular layer
strata periventriculare
stratum griseum periventricular
stratum periventriculare
zebrafish_anatomy
SVP
ZFA:0000516
periventricular grey zone
Tissue located on the ventral side of the optic tectum, that contains the cell bodies of most tectal neurons. It is adjacent to the tectal ventricle and opposite the eminentia granularis of the cerebellum. It also contains a neurogenic niche and has hypothalamic inputs. The dendrites of neurons from the periventricular grey zones project their apical dendrites to the stratum opticum and stratum fibrosum et griseum superficale and synapse with retinal axons that project to these layers.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140919-7
ZFIN:ZDB-PUB-180207-5
PGZ
ZFIN:ZDB-PUB-140919-7
periventricular grey zones
periventricular layer
ZFIN:ZDB-PUB-180207-5
stratum griseum periventricular
ZFIN:ZDB-PUB-180207-5
TAO:0000517
lobus glossopharyngei
zebrafish_anatomy
ZFA:0000517
glossopharyngeal lobe
Hindbrain nucleus which is longitudinally oriented and situated along the ventral fourth ventricle and extends rostrally up to the level of the tegmentum of the midbrain. From Neuroanatomy of the Zebrafish Brain.
TAO:0000518
central gray
central grey
zebrafish_anatomy
ZFA:0000518
griseum centrale
Hindbrain nucleus which is longitudinally oriented and situated along the ventral fourth ventricle and extends rostrally up to the level of the tegmentum of the midbrain. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone.
TAO:0000519
haemal arch
ventral arcocentrum
zebrafish_anatomy
ZFA:0000519
hemal arch
Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0000520
zebrafish_anatomy
ZFA:0000520
horizontal commissure
Muscles that insert into skeletal elements of pharyngeal arch 2 (hyoid arch). Dorsal hyoid muscles are innervated by small, posterior branches of the facial nerve VII. Ventral hyoid muscles are innervated by the hyoides ramus of VII.
TAO:0000521
hyoid muscles
zebrafish_anatomy
ZFA:0000521
hyoid muscle
Muscles that insert into skeletal elements of pharyngeal arch 2 (hyoid arch). Dorsal hyoid muscles are innervated by small, posterior branches of the facial nerve VII. Ventral hyoid muscles are innervated by the hyoides ramus of VII.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-970819-13
hyoid muscles
Hyoid muscle that originates at the anterior ceratohyals and inserts into the mesial aponeurosis, meeting its contralateral counterpart. The inferior hyohyoid is responsible for adduction of the hyoid arch.
TAO:0000522
inferior hyohyoids
zebrafish_anatomy
hyohyoideus inferior
ZFA:0000522
inferior hyohyoid
Hyoid muscle that originates at the anterior ceratohyals and inserts into the mesial aponeurosis, meeting its contralateral counterpart. The inferior hyohyoid is responsible for adduction of the hyoid arch.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-080306-33
inferior hyohyoids
TAO:0000523
zebrafish_anatomy
ZFA:0000523
inferior reticular formation
One of eight distinct lateral lines in the 4-day larva consistingo of four neuromast that are positioned inferior or posterior to the eye A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000524
infraorbital line
zebrafish_anatomy
ZFA:0000524
infraorbital lateral line
One of eight distinct lateral lines in the 4-day larva consistingo of four neuromast that are positioned inferior or posterior to the eye A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anteriolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes.
TAO:0000525
zebrafish_anatomy
ZFA:0000525
intercalarium
Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anteriolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes.
ZFIN:ZDB-PUB-031103-13
Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only.
TAO:0000526
intermuscular bones
zebrafish_anatomy
ZFA:0000526
intermuscular bone
Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only.
GOC:cvs
ORCiD:0000-0002-2244-7917
intermuscular bones
The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials.
TAO:0000527
infrapharyngobranchial
pharyngobranchials
zebrafish_anatomy
ZFA:0000527
pharyngobranchial bone
The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
Muscle of the caudal fin that attaches to the appendicular skeleton and attaches to the first long ray on the dorsal side of the caudal fin.
TAO:0000528
interradiali
interradialis
zebrafish_anatomy
IC
ZFA:0000528
interradialis caudalis
Muscle of the caudal fin that attaches to the appendicular skeleton and attaches to the first long ray on the dorsal side of the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
interradiali
Cavitated compound organ located in the pleuroperitoneal cavity where hematopoiesis and filtering of blood occur.
TAO:0000529
mesonephros
zebrafish_anatomy
ZFA:0000529
kidney
Cavitated compound organ located in the pleuroperitoneal cavity where hematopoiesis and filtering of blood occur.
GOC:cvs
ORCiD:0000-0002-2244-7917
Otolith part of utricle.
ZFA:0001102
TAO:0000530
utricular otolith
utriculith
zebrafish_anatomy
immature anterior otolith
ZFA:0000530
lapillus
Otolith part of utricle.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020403-4
TAO:0000531
lateral columns
zebrafish_anatomy
ZFA:0000531
lateral column
lateral columns
Lateral division of the valvula cerebelli.
TAO:0000532
lateral division
valvula cerebelli, pars lateralis
zebrafish_anatomy
ZFA:0000532
lateral valvula cerebelli
Lateral division of the valvula cerebelli.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0000533
lateral funiculi
zebrafish_anatomy
ZFA:0000533
lateral funiculus
lateral funiculi
The lateral longitudinal fascicule is an ascending bundle of axons. The LLF contains fibers of the auditory and mechanosensory systems which originate in the primary sensory brainstem nuclei and terminate in the torus semicircularis. The LLF lies dorsal to the superior reticular formation, adjacent to the ventral rhombencephalic commissure. The LLF becomes displaced more laterally as it approaches the torus semicircularis. The LLF is homologous to the mammalian lateral lemniscus.
ZFA:0000198
TAO:0000534
lateral lemniscus
lateral longitudinal fascicle
lateral longitundinal fasciculus
zebrafish_anatomy
LLF
ZFA:0000534
lateral longitudinal fasciculus
The lateral longitudinal fascicule is an ascending bundle of axons. The LLF contains fibers of the auditory and mechanosensory systems which originate in the primary sensory brainstem nuclei and terminate in the torus semicircularis. The LLF lies dorsal to the superior reticular formation, adjacent to the ventral rhombencephalic commissure. The LLF becomes displaced more laterally as it approaches the torus semicircularis. The LLF is homologous to the mammalian lateral lemniscus.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-1280
lateral lemniscus
ZFIN:ZDB-PUB-040526-7
TAO:0000535
lateral reticular nuclei
zebrafish_anatomy
ZFA:0000535
lateral reticular nucleus
lateral reticular nuclei
Telencephalic nucleus which is laterally located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000536
Dl
area dorsalis telencephali, zona lateralis
lateral zone of D
lateral zone of dorsal telencephalic area
zebrafish_anatomy
ZFA:0000536
lateral zone of dorsal telencephalon
Telencephalic nucleus which is laterally located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Dl
ZFIN:ZDB-PUB-150226-6
Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responsible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw.
TAO:0000537
levator operculae
zebrafish_anatomy
ZFA:0000537
levator operculi
Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responsible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-080306-33
Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.
TAO:0000538
dorsal rib
pleural rib
zebrafish_anatomy
ZFA:0000538
rib
Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.
GOC:cvs
ORCiD:0000-0002-2244-7917
The locus coeruleus is a widely projecting isthmal noradrenergic nucleus. It consists of between three and ten neurons, most of which have multiple, bilaterally projecting axons.
TAO:0000539
loci coeruleus
zebrafish_anatomy
ZFA:0000539
Sometimes considered part of the reticular formation.
locus coeruleus
The locus coeruleus is a widely projecting isthmal noradrenergic nucleus. It consists of between three and ten neurons, most of which have multiple, bilaterally projecting axons.
ZFIN:ZDB-PUB-961014-717
loci coeruleus
TAO:0000540
magnocellular octaval nuclei
zebrafish_anatomy
ZFA:0000540
magnocellular octaval nucleus
magnocellular octaval nuclei
Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres.
TAO:0000541
marginal blastomeres
zebrafish_anatomy
ZFA:0000541
marginal blastomere
Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres.
ZFIN:ZDB-PUB-961014-576
marginal blastomeres
TAO:0000542
medial column of the reticular formation
medial columns
zebrafish_anatomy
ZFA:0000542
medial column
medial columns
The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata. The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord. Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure.
TAO:0000543
zebrafish_anatomy
MLF
ZFA:0000543
medial longitudinal fasciculus
The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata. The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord. Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-1280
ZFA:0001646
zebrafish_anatomy
ZFA:0000544
medial pterygiophores anal fin
true
Brain structure that is located ventrocaudal to the cerebellum and just anterior to the spinal cord and contains the sensory and motor nuclei of six cranial nerves. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata.
TAO:0000545
zebrafish_anatomy
ZFA:0000545
medulla oblongata
Brain structure that is located ventrocaudal to the cerebellum and just anterior to the spinal cord and contains the sensory and motor nuclei of six cranial nerves. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata.
ISBN:3764351209
Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber.
TAO:0000546
zebrafish_anatomy
Wolffian duct
renal duct
ZFA:0000546
mesonephric duct
Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0000547
zebrafish_anatomy
ZFA:0000547
mouth
Anatomical system consisting of the cardiac, skeletal and smooth muscles.
TAO:0000548
zebrafish_anatomy
ZFA:0000548
musculature system
Anatomical system consisting of the cardiac, skeletal and smooth muscles.
GOC:cvs
ORCiD:0000-0002-2244-7917
Paired fin bone that attaches the pectoral girdle to the skull via two projections contacting the epiotic and intercalar bones, and carry the main laterosensory canal.
TAO:0000549
postemporal
zebrafish_anatomy
post-temporal
ZFA:0000549
posttemporal
Paired fin bone that attaches the pectoral girdle to the skull via two projections contacting the epiotic and intercalar bones, and carry the main laterosensory canal.
GOC:mh
ORCiD:0000-0001-9114-8737
External openings to the nasal cavity.
TAO:0000550
nares
nostril
zebrafish_anatomy
ZFA:0000550
naris
External openings to the nasal cavity.
GOC:mh
ORCiD:0000-0001-9114-8737
http://medical-dictionary.thefreedictionary.com/nares
nares
Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem.
TAO:0000551
zebrafish_anatomy
ZFA:0000551
nucleus lateralis valvulae
Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-100601-20
ZFIN:ZDB-PUB-961014-1280
Nucleus located in the midbrain tegmentum that controls motor coordination during locomotion.
TAO:0000552
red nucleus
zebrafish_anatomy
ZFA:0000552
nucleus ruber
Nucleus located in the midbrain tegmentum that controls motor coordination during locomotion.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-151021-15
TAO:0000553
motor nucleus III
nIII
zebrafish_anatomy
ZFA:0000553
oculomotor nucleus
Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located. The olfactory epithelium bowl-shaped structures surrounding the lumen of the olfactory pit.
TAO:0000554
nasal epithelium
nasal sensory epithelium
zebrafish_anatomy
ZFA:0000554
olfactory epithelium
Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located. The olfactory epithelium bowl-shaped structures surrounding the lumen of the olfactory pit.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
A large flap, covered by integument, supported by several flat bones, actuated by muscles, found on the side of the head covering the gill chambers.
TAO:0000555
gill cover
opercular apparatus
operculum
zebrafish_anatomy
gill slit
opercular cover
ZFA:0000555
opercular flap
A large flap, covered by integument, supported by several flat bones, actuated by muscles, found on the side of the head covering the gill chambers.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110609-47
opercular cover
ZFIN:ZDB-PUB-030304-18
Decussation of cranial nerve II axons whereby the retinal axons cross the midline, projecting contralaterally through the optic tract.
TAO:0000556
chiasma opticum
optic commissure
zebrafish_anatomy
ZFA:0000556
optic chiasm
Decussation of cranial nerve II axons whereby the retinal axons cross the midline, projecting contralaterally through the optic tract.
GOC:ymb
ORCiD:0000-0002-9900-7880
chiasma opticum
ZFIN:ZDB-PUB-961014-1280
Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra.
TAO:0000557
penultimate vertebra
preural centrum 1
pu1
second last vertebra
zebrafish_anatomy
ZFA:0000557
preural 1 vertebra
Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra.
ZFIN:ZDB-PUB-011008-1
Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
TAO:0000558
pm
posterior sensory patch
posteromedial macula
zebrafish_anatomy
ZFA:0000558
posterior macula
Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
Cavitated compound organ that is a fluid filed chamber with a maculae on one surface and associated otolith tethered to the maculae.
TAO:0000559
otolith organs
zebrafish_anatomy
ZFA:0000559
otolith organ
Cavitated compound organ that is a fluid filed chamber with a maculae on one surface and associated otolith tethered to the maculae.
GOC:ymb
ORCiD:0000-0002-9900-7880
otolith organs
Duct that connects ovary with cloacal chamber. In zebrafish the oviduct is a continuation of the ovary.
TAO:0000560
oviducts
zebrafish_anatomy
ZFA:0000560
oviduct
Duct that connects ovary with cloacal chamber. In zebrafish the oviduct is a continuation of the ovary.
GOC:cvs
GOC:mh
ISBN:0199638098
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
oviducts
Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic.
TAO:0000561
zebrafish_anatomy
ZFA:0000561
parasphenoid
Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic.
GOC:mh
ORCiD:0000-0001-9114-8737
true
Musculature that is part of the pectoral fin.
TAO:0000563
zebrafish_anatomy
pectoral fin muscle
ZFA:0000563
pectoral fin musculature
Musculature that is part of the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Deep pelvic muscle that originates from the basipterygium and lies mainly parallel to the rays and attaches to the base of all the rays except ray 1.
TAO:0000564
abductor profundus pelvicus
pelvic abductors profundus
zebrafish_anatomy
ZFA:0000564
pelvic abductor profundus
Deep pelvic muscle that originates from the basipterygium and lies mainly parallel to the rays and attaches to the base of all the rays except ray 1.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
abductor profundus pelvicus
ZFIN:ZDB-PUB-171118-8
pelvic abductors profundus
Anatomical cluster that consists of the paired basipterygia which support the pelvic fin.
TAO:0000565
pelvic girdles
zebrafish_anatomy
ZFA:0000565
pelvic girdle
Anatomical cluster that consists of the paired basipterygia which support the pelvic fin.
TAO:WD
pelvic girdles
Patch of thickened, pseudostratified epithelium that is associated with the posterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The posterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
ZFA:0000478
TAO:0000566
caudal crista
pc
posterior crista ampullaris
posterior cristae
posterior semicircular canal sensory patch
posterior semicircular canal sensory patches
zebrafish_anatomy
ZFA:0000566
posterior crista
Patch of thickened, pseudostratified epithelium that is associated with the posterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The posterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
posterior cristae
posterior semicircular canal sensory patches
The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish.
TAO:0000567
premaxillae
zebrafish_anatomy
ZFA:0000567
premaxilla
The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish.
GOC:ymb
ORCiD:0000-0002-9900-7880
premaxillae
Presumptive structure fated to become blood. Determined by marker expression.
TAO:0000568
zebrafish_anatomy
ZFA:0000568
presumptive blood
Presumptive structure fated to become blood. Determined by marker expression.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Embryonic structure that gives rise to the hindbrain.
TAO:0000569
presumptive rhombencephalon
zebrafish_anatomy
ZFA:0000569
presumptive hindbrain
Embryonic structure that gives rise to the hindbrain.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue that is part of the anterior neural keel and will form the optic vesicle.
ZFA:0000021
TAO:0000570
eye field
zebrafish_anatomy
ZFA:0000570
optic primordium
Portion of tissue that is part of the anterior neural keel and will form the optic vesicle.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure that gives rise to the telencephalon.
TAO:0000571
zebrafish_anatomy
ZFA:0000571
presumptive telencephalon
Embryonic structure that gives rise to the telencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
true
Portion of tissue which is the innermost layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain.
TAO:0000573
stratum cellulare internum bulbi olfactorii
zebrafish_anatomy
ZFA:0000573
internal cellular layer
Portion of tissue which is the innermost layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Embryonic structure that gives rise to the diencephalon.
TAO:0000574
zebrafish_anatomy
ZFA:0000574
presumptive diencephalon
Embryonic structure that gives rise to the diencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. The prootic bear foramina that accommodate branches of the trigeminal and facial nerves.
TAO:0000575
prootics
zebrafish_anatomy
ZFA:0000575
prootic
Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. The prootic bear foramina that accommodate branches of the trigeminal and facial nerves.
GOC:mh
ORCiD:0000-0001-9114-8737
prootics
Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet.
TAO:0000576
autopterotic
zebrafish_anatomy
ZFA:0000576
pterotic
Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet.
GOC:mh
ORCiD:0000-0001-9114-8737
Afferent vein that supplies the kidney.
TAO:0000577
renal portal veins
zebrafish_anatomy
ZFA:0000577
renal portal vein
Afferent vein that supplies the kidney.
GOC:cvs
ISBN:9781118222942
ORCiD:0000-0002-2244-7917
renal portal veins
Endochondral bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly. The ceratohyal bone begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal.
TAO:0000578
anterior ceratohyal
ceratohyal anterior
rostral ceratohyal
zebrafish_anatomy
ZFA:0000578
ceratohyal bone
Endochondral bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly. The ceratohyal bone begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal.
GOC:mh
ORCiD:0000-0001-9114-8737
Brainstem tract which carries cerebellar afferents from the pretectum and runs medial to the lateral longitudinal fascicle for a distance before turning dorsally to traverse the nucleus lateralis valvulae. Fuses with the caudal mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000579
anterior mesencephalo-cerebellar tract
zebrafish_anatomy
ZFA:0000579
rostral mesencephalo-cerebellar tract
Brainstem tract which carries cerebellar afferents from the pretectum and runs medial to the lateral longitudinal fascicle for a distance before turning dorsally to traverse the nucleus lateralis valvulae. Fuses with the caudal mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Preglomerular nucleus which is the most rostrolaterally located of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
TAO:0000580
anterior preglomerular nucleus
nucleus praeglomerulosus anterior
zebrafish_anatomy
ZFA:0000580
rostral preglomerular nucleus
Preglomerular nucleus which is the most rostrolaterally located of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is the most anterior and lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain.
TAO:0000581
anterior tuberal nucleus
nucleus tuberis anterior
zebrafish_anatomy
ZFA:0000581
rostral tuberal nucleus
Diencephalic nucleus which is the most anterior and lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000582
zebrafish_anatomy
ZFA:0000582
saccus dorsalis
Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen.
TAO:0000583
scapulae
zebrafish_anatomy
ZFA:0000583
scapula
Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen.
TAO:GA_TG
scapulae
true
Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid.
TAO:0000585
zebrafish_anatomy
ZFA:0000585
kinethmoid cartilage
Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid.
GOC:mh
ORCiD:0000-0001-9114-8737
Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra.
TAO:0000586
antepenultimate vertebra
preural centrum 2
pu2
third last vertebra
zebrafish_anatomy
ZFA:0000586
preural 2 vertebra
Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra.
ZFIN:ZDB-PUB-011008-1
Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anteriolateral process that borders the posterodorsal margin of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet.
TAO:0000587
autosphenotic
zebrafish_anatomy
ZFA:0000587
sphenotic
Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anteriolateral process that borders the posterodorsal margin of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet.
GOC:mh
ORCiD:0000-0001-9114-8737
The sensory ganglion of the ear. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/stato/stato.html'>statoacoustic ganglion</a> by T. Whitfield.)
TAO:0000588
auditory ganglion
gVIII
octaval ganglion
sag
statoacoustic ganglia
zebrafish_anatomy
ZFA:0000588
statoacoustic (VIII) ganglion
The sensory ganglion of the ear. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/stato/stato.html'>statoacoustic ganglion</a> by T. Whitfield.)
GOC:mh
ORCiD:0000-0001-9114-8737
statoacoustic ganglia
Anatomical groove which separates the dorsal and medial zones of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000589
zebrafish_anatomy
ZFA:0000589
sulcus ypsiloniformis
Anatomical groove which separates the dorsal and medial zones of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:cvs
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
Region of the head where the mouth and oral structures are located.
TAO:0000590
zebrafish_anatomy
ZFA:0000590
oral region
Region of the head where the mouth and oral structures are located.
GOC:ymb
ORCid:0000-0002-9900-7880
Portion of presumptive mesoderm fated to become paraxial mesoderm. Determined by fate mapping.
TAO:0000591
zebrafish_anatomy
ZFA:0000591
presumptive paraxial mesoderm
Portion of presumptive mesoderm fated to become paraxial mesoderm. Determined by fate mapping.
GOC:mh
ORCiD:0000-0001-9114-8737
Superficial, dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto all pelvic fin rays except ray 1.
TAO:0000592
adductor superficialis pelvicus
superficial pelvic adductors
zebrafish_anatomy
ZFA:0000592
superficial pelvic adductor
Superficial, dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto all pelvic fin rays except ray 1.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
adductor superficialis pelvicus
ZFIN:ZDB-PUB-171118-8
superficial pelvic adductors
TAO:0000593
zebrafish_anatomy
ZFA:0000593
There may be a cholinergic nucleus called the superior reticular nucleus rostral to the locus coeruleus, ZDB-PUB-040526-6.
superior reticular formation medial column
Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal.
TAO:0000594
supracleithra
zebrafish_anatomy
ZFA:0000594
supracleithrum
Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal.
TAO:GA_TG
TAO:WD
supracleithra
Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exoccipital and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally.
TAO:0000595
zebrafish_anatomy
ZFA:0000595
supraoccipital
Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exoccipital and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFA:0001410
zebrafish_anatomy
ZFA:0000596
supraorbital series
true
CNS white matter that is part of the telencephalon.
TAO:0000597
telencephalic tract/commissure
zebrafish_anatomy
ZFA:0000597
telencephalic white matter
CNS white matter that is part of the telencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
Male reproductive organ. Adult zebrafish testes are paired organs forming elongated structures, internally organized into tubules. These tubules are formed by seminiferous epithelium containing cysts of spermatogonia and spermatocytes surrounded by somatic support cells, called Sertoli cells. Cysts are arranged around a lumen containing spermatozoa that is connected to the efferent ducts. The interstitial regions between the tubules contain the steroid-producing Leydig cells, connective tissue, and blood vessels.
TAO:0000598
testes
zebrafish_anatomy
ZFA:0000598
testis
Male reproductive organ. Adult zebrafish testes are paired organs forming elongated structures, internally organized into tubules. These tubules are formed by seminiferous epithelium containing cysts of spermatogonia and spermatocytes surrounded by somatic support cells, called Sertoli cells. Cysts are arranged around a lumen containing spermatozoa that is connected to the efferent ducts. The interstitial regions between the tubules contain the steroid-producing Leydig cells, connective tissue, and blood vessels.
GOC:cvs
GOC:mh
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-161215-23
testes
Multi-tissue structure that is part of the midbrain and develops from the alar plate. The torus semicircularis is located dorsal to the lateral tegmentum where it extends into the medial tectal ventricle and receives ascending sensory octavolateralis input.
TAO:0000599
semicircular torus
zebrafish_anatomy
ZFA:0000599
torus semicircularis
Multi-tissue structure that is part of the midbrain and develops from the alar plate. The torus semicircularis is located dorsal to the lateral tegmentum where it extends into the medial tectal ventricle and receives ascending sensory octavolateralis input.
GOC:mh
ORCiD:0000-0001-9114-8737
Cranial nerve that innervates the oculomotor system. The trochlear nerve is the only motor nerve to project dorsally and then cross the midline before exiting the neuroepithelium and re-orienting ventrally to project to the contralateral superior oblique extraocular muscle.
TAO:0000600
CN-IV
trochlear
trochlear nerve
zebrafish_anatomy
ZFA:0000600
cranial nerve IV
Cranial nerve that innervates the oculomotor system. The trochlear nerve is the only motor nerve to project dorsally and then cross the midline before exiting the neuroepithelium and re-orienting ventrally to project to the contralateral superior oblique extraocular muscle.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-131119-12
Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain.
TAO:0000601
periventricular pretectum
pretectal periventricular nuclei
zebrafish_anatomy
ZFA:0000601
pretectal periventricular nucleus
Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
pretectal periventricular nuclei
Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone.
TAO:0000602
uroneurals
zebrafish_anatomy
ZFA:0000602
uroneural
Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone.
ISSN:0362-2525
TAO:WD
http://citebank.org/node/36904
uroneurals
Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain.
TAO:0000603
valvula cerebellum
zebrafish_anatomy
valvula
ZFA:0000603
valvula cerebelli
Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
valvula cerebellum
Outflow artery from the heart to the aortic arches.
TAO:0000604
zebrafish_anatomy
ZFA:0000604
ventral aorta
Outflow artery from the heart to the aortic arches.
ZFIN:ZDB-PUB-961014-576
TAO:0000605
ventral funiculi
zebrafish_anatomy
ZFA:0000605
ventral funiculus
ventral funiculi
TAO:0000606
ventral oblique branchial muscles
zebrafish_anatomy
ZFA:0000606
ventral oblique branchial muscle
ventral oblique branchial muscles
Brainstem commissure that intersects the medial longitudinal fasciculus.
TAO:0000607
zebrafish_anatomy
ZFA:0000607
ventral rhombencephalic commissure
Brainstem commissure that intersects the medial longitudinal fasciculus.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000608
transverse ventralis
transversus ventralis
zebrafish_anatomy
ZFA:0000608
ventral transverse
Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to mechanoreception. From Neuroanatomy of the Zebrafish Brain.
TAO:0000609
zebrafish_anatomy
ZFA:0000609
ventrolateral nucleus
Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to mechanoreception. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Connective tissue partitions developing between the myotomes.
TAO:0000610
transverse myoseptum
zebrafish_anatomy
ZFA:0000610
vertical myoseptum
Connective tissue partitions developing between the myotomes.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
Collection of the visceromotor nuclei and their fiber tracts in the medulla oblongata.
TAO:0000611
zebrafish_anatomy
ZFA:0000611
visceromotor column
Collection of the visceromotor nuclei and their fiber tracts in the medulla oblongata.
ISBN:3540560130
Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII. Formed by the intermandibularis posterior and ventral interhyoideus.
TAO:0000612
protractor hyoideus
protractors hyoidei
zebrafish_anatomy
ZFA:0000612
Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317.
In the zebrafish, as in most other teleosts, the interhyoideus becomes associated with the intermandibularis posterior, forming the protractor hyoideus. ZDB-PUB-080306-33.
protractor hyoidei
Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII. Formed by the intermandibularis posterior and ventral interhyoideus.
TAO:WD
ZFIN:ZDB-PUB-080306-33
protractor hyoideus
protractors hyoidei
true
Abductor muscle that develops from the primitive pectoral fin abductor. It originates along the anterior skeletal flange of the pectoral girdle. The abductor profundus bundles insert onto the fin ray base proximal processes of all fin rays.
TAO:0000614
abductors profundus
zebrafish_anatomy
ZFA:0000614
abductor profundus
Abductor muscle that develops from the primitive pectoral fin abductor. It originates along the anterior skeletal flange of the pectoral girdle. The abductor profundus bundles insert onto the fin ray base proximal processes of all fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
abductors profundus
Hyoid muscle that originates at the parasphenoid and inserts into the mesial sides of the hyomandibula, metapterygoid and entopterygoid. The Adductor arcus palatini is responsible for suspensorial adduction.
TAO:0000615
adductors arcus palatini
zebrafish_anatomy
ZFA:0000615
adductor arcus palatini
Hyoid muscle that originates at the parasphenoid and inserts into the mesial sides of the hyomandibula, metapterygoid and entopterygoid. The Adductor arcus palatini is responsible for suspensorial adduction.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-080306-33
adductors arcus palatini
Small thin adductor muscle that is part of the pectoral fin. The origin of the adductor profundus lies along the developing anterior skeletal flange of the pectoral girdle. The adductor profundus develops from the primitive pectoral fin adductor.
TAO:0000616
adductors profundus
zebrafish_anatomy
ZFA:0000616
adductor profundus
Small thin adductor muscle that is part of the pectoral fin. The origin of the adductor profundus lies along the developing anterior skeletal flange of the pectoral girdle. The adductor profundus develops from the primitive pectoral fin adductor.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
adductors profundus
Series of muscles that have a distal attachment at the anteriolateral base of each ray and spike and a proximal attachment to the haemal spines. A tendon runs along one third the dorsoventral length of the muscle toward the attachment at the haemal spine. These muscles act in opposition to the anal depressors to raise the anal fin rays.
TAO:0000617
anal erectors
erectores anales
zebrafish_anatomy
ZFA:0000617
anal erector
Series of muscles that have a distal attachment at the anteriolateral base of each ray and spike and a proximal attachment to the haemal spines. A tendon runs along one third the dorsoventral length of the muscle toward the attachment at the haemal spine. These muscles act in opposition to the anal depressors to raise the anal fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
anal erectors
erectores anales
ZFIN:ZDB-PUB-171118-8
Brainstem commissure located immediately rostral to the interpeduncular nucleus. Many fibers in the tecto-bulbar tract cross the midline through the ansulate commissure. Referred to as the ventral tegmental commissure at embryonic stages, and is the only commissure to change names during development. From Neuroanatomy of the Zebrafish Brain.
TAO:0000618
Cans
commissura ansulata
ventral tegmental commissure
zebrafish_anatomy
ZFA:0000618
ansulate commissure
Brainstem commissure located immediately rostral to the interpeduncular nucleus. Many fibers in the tecto-bulbar tract cross the midline through the ansulate commissure. Referred to as the ventral tegmental commissure at embryonic stages, and is the only commissure to change names during development. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Patch of thickened, pseudostratified epithelium that is associated with the anterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The anterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
ZFA:0000273
TAO:0000619
ac
anterior crista ampullaris
anterior cristae
anterior semicircular canal sensory patch
anterior semicircular canal sensory patches
rostral crista
zebrafish_anatomy
ZFA:0000619
anterior crista
Patch of thickened, pseudostratified epithelium that is associated with the anterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The anterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
anterior cristae
anterior semicircular canal sensory patches
The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms).
TAO:0000620
palatine
zebrafish_anatomy
ZFA:0000620
autopalatine
The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms).
GOC:ymb
ORCiD:0000-0002-9900-7880
The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei.
TAO:0000621
quadrates
zebrafish_anatomy
ZFA:0000621
quadrate
The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei.
GOC:ymb
ORCiD:0000-0002-9900-7880
quadrates
Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves.
TAO:0000622
barble
zebrafish_anatomy
ZFA:0000622
barbel
Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves.
GOC:ymb
ORCiD:0000-0002-9900-7880
Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962).
TAO:0000623
pelvic bone
zebrafish_anatomy
pelvic girdle
ZFA:0000623
basipterygium
Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962).
TAO:curator
TAO:0000624
zebrafish_anatomy
ZFA:0000624
Term is being obsoleted because it cannot be anatomically identified in zebrafish. From Neuroanatomy of the Zebrafish Brain ISBN:3764351209.
brachium conjunctivum
true
true
Brainstem and spinal tract which emerges medial to the caudal intermediate reticular formation and runs caudally along the medial edge of the inferior reticular formation. It is displaced laterally and associates with other tracts in the dorsal part of the funiculus lateralis immediately prior to reaching the spinal cord. The bulbo-spinal tract carries descending spinal projections. From Neuroanatomy of the Zebrafish Brain.
TAO:0000626
tractus bulbospinalis
zebrafish_anatomy
ZFA:0000626
bulbo-spinal tract
Brainstem and spinal tract which emerges medial to the caudal intermediate reticular formation and runs caudally along the medial edge of the inferior reticular formation. It is displaced laterally and associates with other tracts in the dorsal part of the funiculus lateralis immediately prior to reaching the spinal cord. The bulbo-spinal tract carries descending spinal projections. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Endochondral bone that begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage.
TAO:0000627
caudal ceratohyal
posterior ceratohyal
zebrafish_anatomy
ZFA:0000627
epihyal
Endochondral bone that begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage.
GOC:mh
ORCiD:0000-0001-9114-8737
Fin musculature that is part of the caudal fin. The musculature is composed of 12 muscles that are arranged in a superficial and a deep muscle layer. Nerve roots of spinal segments 27-31 supply the caudal fin muscles.
TAO:0000628
zebrafish_anatomy
ZFA:0000628
caudal fin musculature
Fin musculature that is part of the caudal fin. The musculature is composed of 12 muscles that are arranged in a superficial and a deep muscle layer. Nerve roots of spinal segments 27-31 supply the caudal fin muscles.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-011008-1
Abducens motor nucleus which is located at the level of the intermediate reticular formation.
TAO:0000629
nVIc
nucleus nervi abducentis, pars caudalis
zebrafish_anatomy
ZFA:0000629
caudal motor nucleus
Abducens motor nucleus which is located at the level of the intermediate reticular formation.
GOC:mh
ORCiD:0000-0001-9114-8737
Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000630
caudal parvocellular preoptic nuclei
posterior parvocellular preoptic nucleus
zebrafish_anatomy
ZFA:0000630
caudal parvocellular preoptic nucleus
Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain.
ISBN:3764351209
caudal parvocellular preoptic nuclei
Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000631
caudal pretectal nuclei
posterior pretectal nucleus
zebrafish_anatomy
ZFA:0000631
caudal pretectal nucleus
Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
caudal pretectal nuclei
Anatomical system that has as its parts the organs concerned with reproduction.
TAO:0000632
zebrafish_anatomy
ZFA:0000632
reproductive system
Anatomical system that has as its parts the organs concerned with reproduction.
UBERON:curator
Brain structure which is part of the diencephalon and is larger than the dorsal thalamus and ventral thalamus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000633
posterior tubercle
posterior tuberculum
zebrafish_anatomy
ZFA:0000633
caudal tuberculum
Brain structure which is part of the diencephalon and is larger than the dorsal thalamus and ventral thalamus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Multi-tissue structure which forms most of the median tuberal portion of the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
hypothalamus pars tuberalis
tuberal hypothalamus
zebrafish_anatomy
ZFA:0000634
caudal hypothalamic zone
Multi-tissue structure which forms most of the median tuberal portion of the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
hypothalamus pars tuberalis
ZFIN:ZDB-PUB-961014-1280
tuberal hypothalamus
ZFIN:ZDB-PUB-961014-1280
Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000635
nucleus praetectalis centralis
zebrafish_anatomy
ZFA:0000635
central pretectal nucleus
Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Portion of tissue composed of parallel fibers that originate at the granular eminence that overlays the rhombencephalic lateral line region. Also termed the molecular layer.
TAO:0000636
crista cerebellaris molecular layer
zebrafish_anatomy
ZFA:0000636
Not sure how much of the molecular layer is cerebellar crest.
cerebellar crest
Portion of tissue composed of parallel fibers that originate at the granular eminence that overlays the rhombencephalic lateral line region. Also termed the molecular layer.
GOC:ymb
ISBN:3540560130
ORCiD:0000-0002-9900-7880
crista cerebellaris molecular layer
ZFIN:ZDB-PUB-961014-1280
Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum is bilaterally paired.
TAO:0000637
zebrafish_anatomy
ZFA:0000637
claustrum cartilage
Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum is bilaterally paired.
GOC:mh
ORCiD:0000-0001-9114-8737
Anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. From Neuroanatomy of the Zebrafish Brain.
TAO:0000638
commissura anterior, pars dorsalis
zebrafish_anatomy
ZFA:0000638
commissura rostral, pars dorsalis
Anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. From Neuroanatomy of the Zebrafish Brain.
ISBN:3764351209
Cerebellar commissure that runs between the bulbo-spinal tract and the vestibulo-spinal tract.
TAO:0000639
commissura nucleorum gustatoriorum secundariorum
zebrafish_anatomy
commissure of the secondary gustatory nuclei
ZFA:0000639
commissure of the secondary gustatory nucleus
Cerebellar commissure that runs between the bulbo-spinal tract and the vestibulo-spinal tract.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Multi-tissue structure that forms the transparent front part of the eye, covering the iris, pupil and anterior chamber.
TAO:0000640
corneas
zebrafish_anatomy
ZFA:0000640
cornea
Multi-tissue structure that forms the transparent front part of the eye, covering the iris, pupil and anterior chamber.
GOC:mh
ORCiD:0000-0001-9114-8737
http://www.encyclopedia.thefreedictionary.com/cornea
corneas
Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.
TAO:0000641
cranial nerves
zebrafish_anatomy
ZFA:0000641
cranial nerve
Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.
GOC:mh
ORCiD:0000-0001-9114-8737
cranial nerves
TAO:0000642
zebrafish_anatomy
ZFA:0000642
decussation of the medial octavolateralis nucleus
CNS white matter comprised of the rostral mesencephalo-cerebellar and caudal mesencephalo-cerebellar tracts. From Neuroanatomy of the Zebrafish Brain.
TAO:0000643
anterior cerebellar tract
tractus cerebellaris anterior
zebrafish_anatomy
ZFA:0000643
rostral cerebellar tract
CNS white matter comprised of the rostral mesencephalo-cerebellar and caudal mesencephalo-cerebellar tracts. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000644
dental plates
zebrafish_anatomy
ZFA:0000644
"Dermal tooth plates are variable structures. During upper pharyngeal arch development in Astatotilapia elegans, dermal tooth plates are formed entirely of fused tooth pedicels (Huys-seune, 1983). However, in lower pharyngeals of the same species, teeth attach to a preexisting plate (Vandewalle et al., 1994). In other teleosts (e.g., cyprinid fifth ceratobranchials), there is no tooth plate per se, because tooth pedicels do not fuse to one another, but each fuses to the endochondral bone separately (see Gosline, 1985)."
Consider ZFA:0001239 ceratobranchial 5 bone or ZFA:0000694 ceratobranchial 5 tooth
dental plate
true
dental plates
TAO:0000645
nucleus octavus descendens
zebrafish_anatomy
ZFA:0000645
descending octaval nucleus
Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally.
TAO:0000646
anal fin distal radials
zebrafish_anatomy
ZFA:0000646
anal fin distal radial
Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally.
GOC:cvs
ORCiD:0000-0002-2244-7917
anal fin distal radials
Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, dorsal to the central caudal thalamic nucleus.
TAO:0000647
dorsal posterior thalamic nucleus
nucleus dorsalis posterior thalami
zebrafish_anatomy
ZFA:0000647
dorsal caudal thalamic nucleus
Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, dorsal to the central caudal thalamic nucleus.
GOC:mh
ORCiD:0000-0001-9114-8737
Musculature that is part of the dorsal fin. The dorsal fin musculature is composed of one unit per fin ray that are arranged in series on each side of the body. Each unit is composed of one fin ray, three supporting pterygophores, and a set of paired depressor, erector, and inclinator muscles.
TAO:0000648
zebrafish_anatomy
ZFA:0000648
dorsal fin musculature
Musculature that is part of the dorsal fin. The dorsal fin musculature is composed of one unit per fin ray that are arranged in series on each side of the body. Each unit is composed of one fin ray, three supporting pterygophores, and a set of paired depressor, erector, and inclinator muscles.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
TAO:0000649
cornu dorsale
dorsal horn
zebrafish_anatomy
ZFA:0000649
dorsal horn spinal cord
TAO:0000650
dorsal motor roots of V
zebrafish_anatomy
ZFA:0000650
dorsal motor root of V
dorsal motor roots of V
Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto the base of the first pelvic fin ray.
TAO:0000651
arrector dorsalis pelvicus
dorsal pelvic arrectors
zebrafish_anatomy
ZFA:0000651
dorsal pelvic arrector
Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto the base of the first pelvic fin ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
arrector dorsalis pelvicus
ZFIN:ZDB-PUB-171118-8
dorsal pelvic arrectors
The afferent sensory portion of the spinal nerve root.
TAO:0000652
radix dorsalis
zebrafish_anatomy
ZFA:0000652
dorsal root
The afferent sensory portion of the spinal nerve root.
http://en.wikipedia.org/wiki/Dorsal_root
Multi-tissue structure that is the dorsal part of the thalamus and emerges ventral to the caudal portion of the ventral habenular nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000653
thalamus, pars dorsalis
zebrafish_anatomy
thalamus
ZFA:0000653
dorsal thalamus
Multi-tissue structure that is the dorsal part of the thalamus and emerges ventral to the caudal portion of the ventral habenular nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
thalamus
ZFIN:ZDB-PUB-100621-4
Abducens motor nucleus which is located at the level of the superior reticular formation.
TAO:0000654
zebrafish_anatomy
ZFA:0000654
rostral motor nucleus
Abducens motor nucleus which is located at the level of the superior reticular formation.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0000655
tractus opticus dorsomedialis
zebrafish_anatomy
ZFA:0000655
dorsomedial optic tract
The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate.
TAO:0000656
ectopterygoids
zebrafish_anatomy
ZFA:0000656
ectopterygoid
The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate.
GOC:ymb
ORCiD:0000-0002-9900-7880
ectopterygoids
The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL).
TAO:0000657
endopterygoid
mesopterygoid
zebrafish_anatomy
ZFA:0000657
entopterygoid
The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL).
GOC:ymb
ORCiD:0000-0002-9900-7880
Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens.
TAO:0000658
epibranchial bones
zebrafish_anatomy
ZFA:0000658
epibranchial bone
Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens.
GOC:mh
ORCiD:0000-0001-9114-8737
epibranchial bones
true
A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone.
TAO:0000660
zebrafish_anatomy
ZFA:0000660
epural
A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone.
TAO:curator
Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum.
TAO:0000661
exoccipitals
zebrafish_anatomy
ZFA:0000661
exoccipital
Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum.
GOC:mh
ORCiD:0000-0001-9114-8737
exoccipitals
TAO:0000662
external pharyngoclavicularae
zebrafish_anatomy
ZFA:0000662
external pharyngoclavicularis
external pharyngoclavicularae
Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones.
ZFA:0001413
TAO:0000663
supratemporal
tabular
zebrafish_anatomy
ZFA:0000663
extrascapula
Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones.
TAO:curator
Cranial nerve where motor axons innervate muscles derived from the second branchial arch. The motor neurons are generated in rhombomere 4.
TAO:0000664
CN-VII
facial nerve
nervus facialis
zebrafish_anatomy
ZFA:0000664
cranial nerve VII
Cranial nerve where motor axons innervate muscles derived from the second branchial arch. The motor neurons are generated in rhombomere 4.
ZFIN:ZDB-PUB-040109-20
TAO:0000665
zebrafish_anatomy
ZFA:0000665
rostral root of abducens nerve
Artery of the gill filament.
TAO:0000666
filamental arteries
zebrafish_anatomy
ZFA:0000666
filamental artery
Artery of the gill filament.
GOC:cvs
ORCiD:0000-0002-2244-7917
filamental arteries
Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure.
TAO:0000667
gill filaments
zebrafish_anatomy
ZFA:0000667
gill filament
Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
http://www.briancoad.com/Dictionary/G.htm
gill filaments
Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. The root is typically found at rhombomere 6. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons.
TAO:0000668
CN-IX
glossopharyngeal nerve
nervus glossopharyngeus
zebrafish_anatomy
ZFA:0000668
cranial nerve IX
Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. The root is typically found at rhombomere 6. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040109-20
ZFIN:ZDB-PUB-110727-5
The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis.
TAO:0000669
anterior kidney
kidney marrow
zebrafish_anatomy
ZFA:0000669
head kidney
The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040923-1
Vein that carries blood away from the liver.
TAO:0000670
hepatic veins
zebrafish_anatomy
ZFA:0000670
hepatic vein
Vein that carries blood away from the liver.
GOC:cvs
ORCiD:0000-0002-2244-7917
hepatic veins
A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses.
TAO:0000671
horizontal septum
zebrafish_anatomy
ZFA:0000671
horizontal myoseptum
A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
The hyomandibula is the large, dorsal-most member of the hyoid arch. It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints. A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle.
TAO:0000672
hyomandibular
zebrafish_anatomy
ZFA:0000672
hyomandibula
The hyomandibula is the large, dorsal-most member of the hyoid arch. It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints. A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle.
GOC:mh
ORCiD:0000-0001-9114-8737
A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.
TAO:0000673
HA
zebrafish_anatomy
ZFA:0000673
hypobranchial artery
A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone.
TAO:0000674
interopercles
zebrafish_anatomy
ZFA:0000674
interopercle
Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone.
GOC:cvs
ORCiD:0000-0002-2244-7917
interopercles
true
Otolith that is part of the sacculus.
ZFA:0001103
TAO:0000676
saccular otolith
sacculith
zebrafish_anatomy
immature posterior otolith
ZFA:0000676
sagitta
Otolith that is part of the sacculus.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020403-4
TAO:0000677
segmental intercostal arteries
zebrafish_anatomy
ZFA:0000677
segmental intercostal artery
segmental intercostal arteries
Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.)
TAO:0000678
sensory hair cells anterior macula
zebrafish_anatomy
ZFA:0000678
hair cell anterior macula
Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.)
MESH:68018069
ZFIN:ZDB-PUB-961014-576
sensory hair cells anterior macula
TAO:0000679
sensory roots of facial nerves
zebrafish_anatomy
ZFA:0000679
sensory root of facial nerve
sensory roots of facial nerves
Heart valve that forms between the atrium and the sinus venosus.
TAO:0000680
sinoatrial valves
zebrafish_anatomy
ZFA:0000680
sinoatrial valve
Heart valve that forms between the atrium and the sinus venosus.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
sinoatrial valves
Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra.
TAO:0000681
neural postzygapophyses
neural postzygopophysis
zebrafish_anatomy
ZFA:0000681
neural postzygapophysis
Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra.
GOC:mh
ORCiD:0000-0001-9114-8737
neural postzygapophyses
TAO:0000682
spinal arteries
zebrafish_anatomy
ZFA:0000682
spinal artery
spinal arteries
Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure and contains ciliated neurosecretory ependymal cells. From Neuroanatomy of the Zebrafish Brain.
TAO:0000683
SCO
zebrafish_anatomy
ZFA:0000683
subcommissural organ
Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure and contains ciliated neurosecretory ependymal cells. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
CNS white matter (commissure) that runs between the optic tectal hemispheres.
TAO:0000684
zebrafish_anatomy
ZFA:0000684
intertectal commissure
CNS white matter (commissure) that runs between the optic tectal hemispheres.
GOC:mh
ORCiD:0000-0001-9114-8737
Abductor muscle that develops from the primitive pectoral fin abductor. The abductor superficialis originates along the anterior skeletal flange of the pectoral girdle, the bundles insert to fin ray base distal processes.
TAO:0000685
abductor superficialis
superficial abductors
zebrafish_anatomy
ZFA:0000685
superficial abductor
Abductor muscle that develops from the primitive pectoral fin abductor. The abductor superficialis originates along the anterior skeletal flange of the pectoral girdle, the bundles insert to fin ray base distal processes.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
abductor superficialis
ZFIN:ZDB-PUB-050920-7
superficial abductors
TAO:0000686
superficial gray and white zone
superficial grey and white zones
zebrafish_anatomy
ZFA:0000686
superficial grey and white zone
superficial grey and white zones
Multi-tissue structure that is the superficial part of the pretectum and is embedded in the optic tract.
TAO:0000687
zebrafish_anatomy
ZFA:0000687
superficial pretectum
Multi-tissue structure that is the superficial part of the pretectum and is embedded in the optic tract.
GOC:mh
ORCiD:0000-0001-9114-8737
Supporting cell that is part of the olfactory epithelium. Their cell bodies are more or less cylindrical, often with a pronounced basal part resting on the basal lamina. Their apical surface is covered with microvillous-like protrusions. Nuclei of olfactory support cell lie below the nuclear layer of olfactory sensory neurons, a feature that is reverse that of other vertebrates. The nuclei are less electron dense then those of the olfactory sensory neurons.
TAO:0000688
zebrafish_anatomy
support cells
ZFA:0000688
Different nuclear position and morphology from CL_0000853.
olfactory support cell
Supporting cell that is part of the olfactory epithelium. Their cell bodies are more or less cylindrical, often with a pronounced basal part resting on the basal lamina. Their apical surface is covered with microvillous-like protrusions. Nuclei of olfactory support cell lie below the nuclear layer of olfactory sensory neurons, a feature that is reverse that of other vertebrates. The nuclei are less electron dense then those of the olfactory sensory neurons.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060724-7
support cells
Periventricular nucleus which is contiguous with the caudal part of the dorsal nucleus of the ventral telencephalon and the postcommissural nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000689
area ventralis telencephali, nucleus supracommissuralis
supracommissural nucleus of V
zebrafish_anatomy
ZFA:0000689
supracommissural nucleus of ventral telencephalon
Periventricular nucleus which is contiguous with the caudal part of the dorsal nucleus of the ventral telencephalon and the postcommissural nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000690
zebrafish_anatomy
ZFA:0000690
supraoptic commissure
Paired dermal bones that form the anterodorsal margin of the orbit.
TAO:0000691
supraorbital bones
zebrafish_anatomy
ZFA:0000691
supraorbital bone
Paired dermal bones that form the anterodorsal margin of the orbit.
GOC:mh
ORCiD:0000-0001-9114-8737
supraorbital bones
The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate.
TAO:0000692
symplectics
zebrafish_anatomy
ZFA:0000692
symplectic
The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate.
GOC:mh
ORCiD:0000-0001-9114-8737
symplectics
The tangential nucleus is located in rhombomere 5 and receives a dense utricular input. Tangential nucleus neurons project contralaterally to extraocular motoneurons and to multiple sites within the reticulospinal complex; unlike other classes of vestibular neuron, they modulate their firing in response to static head displacements.
TAO:0000693
zebrafish_anatomy
ZFA:0000693
tangential nucleus
The tangential nucleus is located in rhombomere 5 and receives a dense utricular input. Tangential nucleus neurons project contralaterally to extraocular motoneurons and to multiple sites within the reticulospinal complex; unlike other classes of vestibular neuron, they modulate their firing in response to static head displacements.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120702-13
ZFIN:ZDB-PUB-160324-18
Is a multi-tissue structure composed of dentine, enameloid and tooth pulp. The tips of the ceratobranchial 5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial 5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms.
TAO:0000694
pharyngeal tooth
teeth
tooth
zebrafish_anatomy
ZFA:0000694
ceratobranchial 5 tooth
Is a multi-tissue structure composed of dentine, enameloid and tooth pulp. The tips of the ceratobranchial 5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial 5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms.
GOC:mh
ORCiD:0000-0001-9114-8737
teeth
The anatomical space located between the lips and the oral valves.
TAO:0000695
labial cavities
zebrafish_anatomy
ZFA:0000695
labial cavity
The anatomical space located between the lips and the oral valves.
GOC:mh
ORCiD:0000-0001-9114-8737
labial cavities
TAO:0000696
lateral ventricle
telencephalic vesicle
ventriculi telencephali
zebrafish_anatomy
ZFA:0000696
telencephalic ventricle
ventriculi telencephali
ZFIN:ZDB-PUB-961014-1280
Cranial nerve which exits the medulla oblongata and carries both sensory and motor axons to and from the facial region. The root is typically found at rhombomere 2.
TAO:0000697
CN-V
trigeminal nerve
zebrafish_anatomy
ZFA:0000697
ZDB-PUB-040109-20
The motor neuron cell bodies arise in rhombomeres 2 and 3. The neurons in r2 extend axons dorsolaterally to their exit point. The axons of branchiomotor neuron cell bodies in r3 initially extend dorsolaterally, then turn rostrally to reach their exit point in r2. The anterior turn occurs where the motor axons meet the ingrowing trigeminal sensory axons.
cranial nerve V
Cranial nerve which exits the medulla oblongata and carries both sensory and motor axons to and from the facial region. The root is typically found at rhombomere 2.
GOC:cvs
GOC:mh
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110727-5
The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swim bladder.
TAO:0000698
zebrafish_anatomy
ZFA:0000698
tripus
The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swim bladder.
ZFIN:ZDB-PUB-031103-13
zebrafish_anatomy
ZFA:0000699
Ural ossification is a process not a structure, thus it belongs in GO biologyical process not ZFA.
ural ossification
true
Otolith organ comprised of the macula utricle and lapillus. The lagena is part of the pars superior. The utricle functions in the detection of movement.
TAO:0000700
utriculus
zebrafish_anatomy
ZFA:0000700
utricle
Otolith organ comprised of the macula utricle and lapillus. The lagena is part of the pars superior. The utricle functions in the detection of movement.
GOC:ymb
ORCiD:0000-0002-9900-7880
Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke.
TAO:0000701
arrector ventralis
ventral arrectors
zebrafish_anatomy
ZFA:0000701
Acts as antagonist to the dorsal arrector.
ventral arrector
Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
arrector ventralis
ZFIN:ZDB-PUB-050920-7
ventral arrectors
TAO:0000702
ventral horns spinal cord
zebrafish_anatomy
ZFA:0000702
ventral horn spinal cord
ventral horns spinal cord
Trigeminal motor nucleus that is located at the ventrolateral edge of the lateral longitudinal fascicle.
TAO:0000703
zebrafish_anatomy
ZFA:0000703
ventral motor nucleus trigeminal nerve
Trigeminal motor nucleus that is located at the ventrolateral edge of the lateral longitudinal fascicle.
ISBN:3764351209
Deep, narrow muscle that arises anteriorly and laterally of the pelvic abductor profundus. It attaches to the first pelvic ray.
TAO:0000704
ventral pelvic arrectors
zebrafish_anatomy
ZFA:0000704
ventral pelvic arrector
Deep, narrow muscle that arises anteriorly and laterally of the pelvic abductor profundus. It attaches to the first pelvic ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8v
ventral pelvic arrectors
The efferent motor portion of the spinal nerve root.
TAO:0000705
ventral roots
zebrafish_anatomy
ZFA:0000705
ventral root
The efferent motor portion of the spinal nerve root.
http://en.wikipedia.org/wiki/Nerve_root
ventral roots
The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates.
TAO:0000706
zebrafish_anatomy
ZFA:0000706
posterior intestine
The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates.
ZFIN:ZDB-PUB-050120-6
Multi-tissue structure which is the ventral region of the median tuberal portion of the hypothalamus and is the most rostral region of the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000707
zebrafish_anatomy
ZFA:0000707
ventral hypothalamic zone
Multi-tissue structure which is the ventral region of the median tuberal portion of the hypothalamus and is the most rostral region of the hypothalamus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000708
ventrolateral optic tracts
zebrafish_anatomy
ZFA:0000708
ventrolateral optic tract
ventrolateral optic tracts
TAO:0000709
vestibulo-spinal tracts
zebrafish_anatomy
ZFA:0000709
vestibulo-spinal tract
vestibulo-spinal tracts
TAO:0000710
commissural nucleus of Cajal
nucleus commissuralis Cajal
zebrafish_anatomy
ZFA:0000710
viscerosensory commissural nucleus of Cajal
A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast.
TAO:0000711
DEL cells
deep cell layer
zebrafish_anatomy
ZFA:0000711
DEL
A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast.
ZFIN:ZDB-PUB-961014-576
DEL cells
deep cell layer
ZFIN:ZDB-PUB-961014-576
The portion of the YSL that lies deep to the blastoderm during epiboly.
TAO:0000712
I-YSL
zebrafish_anatomy
ZFA:0000712
internal yolk syncytial layer
The portion of the YSL that lies deep to the blastoderm during epiboly.
ZFIN:ZDB-PUB-961014-576
I-YSL
ZFIN:ZDB-PUB-961014-576
Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain.
TAO:0000713
abducens motor nuclei
abducens nucleus
motor nucleus VI
nVI
zebrafish_anatomy
ZFA:0000713
abducens motor nucleus
Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
abducens motor nuclei
Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000714
APN
nucleus praetectalis accessorius
zebrafish_anatomy
ZFA:0000714
accessory pretectal nucleus
Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Hyoid muscle that originates at the opercle and subopercle and inserts into the branchiostegal rays. The adductor hyohyoid is responsible for constriction of the branchiostegal membrane.
TAO:0000715
adductors hyohyoid
hyohyoidei adductores
zebrafish_anatomy
ZFA:0000715
adductor hyohyoid
Hyoid muscle that originates at the opercle and subopercle and inserts into the branchiostegal rays. The adductor hyohyoid is responsible for constriction of the branchiostegal membrane.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-080306-33
adductors hyohyoid
Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch.
TAO:0000716
ABA
zebrafish_anatomy
ZFA:0000716
afferent branchial artery
Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch.
ZFIN:ZDB-PUB-010205-5
Apical ectodermal ridge that is part of the median fin fold.
TAO:0000717
zebrafish_anatomy
ZFA:0000717
apical ectodermal ridge median fin fold
Apical ectodermal ridge that is part of the median fin fold.
GOC:cvs
ORCiD:0000-0002-2244-7917
The epaxial region of somite 27 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000718
zebrafish_anatomy
ZFA:0000718
epaxial region somite 27
The epaxial region of somite 27 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 21.
TAO:0000719
slow muscle cells somite 21
zebrafish_anatomy
ZFA:0000719
slow muscle cell somite 21
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 21.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 21
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 24.
TAO:0000720
slow muscle cells somite 24
zebrafish_anatomy
ZFA:0000720
slow muscle cell somite 24
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 24.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 24
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 27.
TAO:0000721
slow muscle cells somite 27
zebrafish_anatomy
ZFA:0000721
slow muscle cell somite 27
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 27.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 27
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 3.
TAO:0000722
slow muscle cells somite 3
zebrafish_anatomy
ZFA:0000722
slow muscle cell somite 3
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 3.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 3
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 5.
TAO:0000723
slow muscle cells somite 5
zebrafish_anatomy
ZFA:0000723
slow muscle cell somite 5
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 5.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 5
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 8.
TAO:0000724
slow muscle cells somite 8
zebrafish_anatomy
ZFA:0000724
slow muscle cell somite 8
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 8.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 8
Undifferentiated mesodermal component of early trunk segment 11 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000725
zebrafish_anatomy
ZFA:0000725
somite 11
Undifferentiated mesodermal component of early trunk segment 11 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 14 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000726
zebrafish_anatomy
ZFA:0000726
somite 14
Undifferentiated mesodermal component of early trunk segment 14 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 17 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000727
zebrafish_anatomy
ZFA:0000727
somite 17
Undifferentiated mesodermal component of early trunk segment 17 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 2 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000728
zebrafish_anatomy
ZFA:0000728
somite 2
Undifferentiated mesodermal component of early trunk segment 2 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 3 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000729
zebrafish_anatomy
ZFA:0000729
epaxial region somite 3
The epaxial region of somite 3 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 23 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000730
zebrafish_anatomy
ZFA:0000730
somite 23
Undifferentiated mesodermal component of early tail segment 23 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 27 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000731
zebrafish_anatomy
ZFA:0000731
somite 27
Undifferentiated mesodermal component of early tail segment 27 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 3 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000732
zebrafish_anatomy
ZFA:0000732
somite 3
Undifferentiated mesodermal component of early trunk segment 3 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 7 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000733
zebrafish_anatomy
ZFA:0000733
somite 7
Undifferentiated mesodermal component of early trunk segment 7 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Vertebra which are the three most posterior vertebra supporting the caudal fin.
TAO:0000734
caudal fin vertebra
specialized centra/vertebrae
zebrafish_anatomy
ZFA:0000734
preural vertebra
Vertebra which are the three most posterior vertebra supporting the caudal fin.
GOC:mh
ORCiD:0000-0001-9114-8737
specialized centra/vertebrae
Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses.
TAO:0000735
haemal postzygapophysis
hemal postzygapophyses
hemal postzygopophysis
zebrafish_anatomy
ZFA:0000735
hemal postzygapophysis
Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses.
GOC:mh
ORCiD:0000-0001-9114-8737
hemal postzygapophyses
true
Skeletal system that is part of the head, including the splanchnocranium, chondrocranium, and dermatocranium.
TAO:0000737
cranial skeleton
zebrafish_anatomy
ZFA:0000737
cranium
Skeletal system that is part of the head, including the splanchnocranium, chondrocranium, and dermatocranium.
GOC:mh
ORCiD:0000-0001-9114-8737
Extraocular muscle innervated by the trochlear nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions at the scleral-corneal junction on the dorsal side of the adult eye, though they have distinct insertion sites in 5dpf fish. The dorsal oblique originates separately from the rectus muscles. The unsegmented paraxial head mesoderm contributes to the dorsal oblique muscles. All the oblique extraocular muscles originate together from the anterior ethmoid plate.
TAO:0000738
dorsal oblique extraocular muscles
superior oblique muscle
zebrafish_anatomy
ZFA:0000738
Mature form at Larval:Protruding-mouth.
dorsal oblique extraocular muscle
Extraocular muscle innervated by the trochlear nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions at the scleral-corneal junction on the dorsal side of the adult eye, though they have distinct insertion sites in 5dpf fish. The dorsal oblique originates separately from the rectus muscles. The unsegmented paraxial head mesoderm contributes to the dorsal oblique muscles. All the oblique extraocular muscles originate together from the anterior ethmoid plate.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110512-18
ZFIN:ZDB-PUB-111205-9
dorsal oblique extraocular muscles
superior oblique muscle
ZFIN:ZDB-PUB-110512-18
The epaxial region of somite 11 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000739
zebrafish_anatomy
ZFA:0000739
epaxial region somite 11
The epaxial region of somite 11 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 5 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000740
zebrafish_anatomy
ZFA:0000740
epaxial region somite 5
The epaxial region of somite 5 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 14 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000741
zebrafish_anatomy
ZFA:0000741
epaxial region somite 14
The epaxial region of somite 14 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 17 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000742
zebrafish_anatomy
ZFA:0000742
epaxial region somite 17
The epaxial region of somite 17 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 2 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum
TAO:0000743
zebrafish_anatomy
ZFA:0000743
epaxial region somite 2
The epaxial region of somite 2 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 22 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000744
zebrafish_anatomy
ZFA:0000744
epaxial region somite 22
The epaxial region of somite 22 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 25 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000745
zebrafish_anatomy
ZFA:0000745
epaxial region somite 25
The epaxial region of somite 25 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 28 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000746
zebrafish_anatomy
ZFA:0000746
epaxial region somite 28
The epaxial region of somite 28 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 30 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000747
zebrafish_anatomy
ZFA:0000747
epaxial region somite 30
The epaxial region of somite 30 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 6 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000748
zebrafish_anatomy
ZFA:0000748
epaxial region somite 6
The epaxial region of somite 6 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 9 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000749
zebrafish_anatomy
ZFA:0000749
epaxial region somite 9
The epaxial region of somite 9 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Fast muscle cell located in somite 10.
TAO:0000750
fast muscle cells somite 10
fast muscle fiber somite 10
zebrafish_anatomy
ZFA:0000750
fast muscle cell somite 10
Fast muscle cell located in somite 10.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 10
The epaxial region of somite 8 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000751
zebrafish_anatomy
ZFA:0000751
epaxial region somite 8
The epaxial region of somite 8 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Fast muscle cell located in somite 13.
TAO:0000752
fast muscle cells somite 13
fast muscle fiber somite 13
zebrafish_anatomy
ZFA:0000752
fast muscle cell somite 13
Fast muscle cell located in somite 13.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 13
Fast muscle cell located in somite 16.
TAO:0000753
fast muscle cells somite 16
fast muscle fiber somite 16
zebrafish_anatomy
ZFA:0000753
fast muscle cell somite 16
Fast muscle cell located in somite 16.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 16
Fast muscle cell located in somite 19.
TAO:0000754
fast muscle cells somite 19
fast muscle fiber somite 19
zebrafish_anatomy
ZFA:0000754
fast muscle cell somite 19
Fast muscle cell located in somite 19.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 19
Fast muscle cell located in somite 21.
TAO:0000755
fast muscle cells somite 21
fast muscle fiber somite 21
zebrafish_anatomy
ZFA:0000755
fast muscle cell somite 21
Fast muscle cell located in somite 21.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 21
Fast muscle cell located in somite 24.
TAO:0000756
fast muscle cells somite 24
fast muscle fiber somite 24
zebrafish_anatomy
ZFA:0000756
fast muscle cell somite 24
Fast muscle cell located in somite 24.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 24
Fast muscle cell located in somite 27.
TAO:0000757
fast muscle cells somite 27
fast muscle fiber somite 27
zebrafish_anatomy
ZFA:0000757
fast muscle cell somite 27
Fast muscle cell located in somite 27.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 27
Fast muscle cell located in somite 3.
TAO:0000758
fast muscle cells somite 3
fast muscle fiber somite 3
zebrafish_anatomy
ZFA:0000758
fast muscle cell somite 3
Fast muscle cell located in somite 3.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 3
Fast muscle cell located in somite 5.
TAO:0000759
fast muscle cells somite 5
fast muscle fiber somite 5
zebrafish_anatomy
ZFA:0000759
fast muscle cell somite 5
Fast muscle cell located in somite 5.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 5
Fast muscle cell located in somite 8.
TAO:0000760
fast muscle cells somite 8
fast muscle fiber somite 8
zebrafish_anatomy
ZFA:0000760
fast muscle cell somite 8
Fast muscle cell located in somite 8.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 8
Portion of tissue that is dorsolateral to the floor plate and part of the midbrain.
TAO:0000761
zebrafish_anatomy
floor plate midbrain
floorplate midbrain
ZFA:0000761
basal plate midbrain region
Portion of tissue that is dorsolateral to the floor plate and part of the midbrain.
ISBN:0444517383
ZFIN:ZDB-PUB-961014-576
Cranial neural crest that gives rise to the facio-acoustic ganglion.
TAO:0000762
facio acoustic neural crest
zebrafish_anatomy
ZFA:0000762
facio-acoustic neural crest
Cranial neural crest that gives rise to the facio-acoustic ganglion.
GOC:ymb
ORCiD:0000-0002-9900-7880
Floor plate that is part of the rhombomere 2.
TAO:0000763
floor plate r2
floorplate r2
zebrafish_anatomy
ZFA:0000763
floor plate rhombomere 2
Floor plate that is part of the rhombomere 2.
GOC:mh
ORCiD:0000-0001-9114-8737
Floor plate that is part of the rhombomere 5.
TAO:0000764
floor plate r5
floorplate r5
zebrafish_anatomy
ZFA:0000764
floor plate rhombomere 5
Floor plate that is part of the rhombomere 5.
GOC:mh
ORCiD:0000-0001-9114-8737
Floor plate that is part of the rhombomere 8.
TAO:0000765
floor plate r8
floorplate r8
zebrafish_anatomy
ZFA:0000765
floor plate rhombomere 8
Floor plate that is part of the rhombomere 8.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue which is part of the valvula cerebelli and consists largely of axons and dendrites.
TAO:0000766
zebrafish_anatomy
ZFA:0000766
granular layer valvula cerebelli
Portion of tissue which is part of the valvula cerebelli and consists largely of axons and dendrites.
GOC:mh
ORCiD:0000-0001-9114-8737
The hypaxial region of somite 11 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000767
zebrafish_anatomy
ZFA:0000767
hypaxial region somite 11
The hypaxial region of somite 11 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 14 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000768
zebrafish_anatomy
ZFA:0000768
hypaxial region somite 14
The hypaxial region of somite 14 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 17 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000769
zebrafish_anatomy
ZFA:0000769
hypaxial region somite 17
The hypaxial region of somite 17 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 2 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000770
zebrafish_anatomy
ZFA:0000770
hypaxial region somite 2
The hypaxial region of somite 2 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 22 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000771
zebrafish_anatomy
ZFA:0000771
hypaxial region somite 22
The hypaxial region of somite 22 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 25 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000772
zebrafish_anatomy
ZFA:0000772
hypaxial region somite 25
The hypaxial region of somite 25 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Fast muscle cell located in somite 12.
TAO:0000773
fast muscle cells somite 12
fast muscle fiber somite 12
zebrafish_anatomy
ZFA:0000773
fast muscle cell somite 12
Fast muscle cell located in somite 12.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 12
The hypaxial region of somite 28 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000774
zebrafish_anatomy
ZFA:0000774
hypaxial region somite 28
The hypaxial region of somite 28 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 30 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000775
zebrafish_anatomy
ZFA:0000775
hypaxial region somite 30
The hypaxial region of somite 30 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 6 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000776
zebrafish_anatomy
ZFA:0000776
hypaxial region somite 6
The hypaxial region of somite 6 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 9 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000777
zebrafish_anatomy
ZFA:0000777
hypaxial region somite 9
The hypaxial region of somite 9 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
A CNS interneuron located in the spinal cord.
CL:0005000
TAO:0000778
interneurons spinal cord
zebrafish_anatomy
ZFA:0000778
spinal cord interneuron
A CNS interneuron located in the spinal cord.
GOC:mh
ORCiD:0000-0001-9114-8737
interneurons spinal cord
Portion of the lateral forebrain bundle that lies in the telencephalon.
TAO:0000779
lateral forebrain bundles telencephalon
zebrafish_anatomy
ZFA:0000779
lateral forebrain bundle telencephalon
Portion of the lateral forebrain bundle that lies in the telencephalon.
GOC:cvs
ORCiD:0000-0002-2244-7917
lateral forebrain bundles telencephalon
Multi-tissue structure forming the sides of the lumen of the diencephalic region of the neural tube.
TAO:0000780
lateral wall diencephalon
zebrafish_anatomy
ZFA:0000780
lateral wall diencephalic region
Multi-tissue structure forming the sides of the lumen of the diencephalic region of the neural tube.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 1.
TAO:0000781
zebrafish_anatomy
ZFA:0000781
lateral wall rhombomere 1
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 1.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 4.
TAO:0000782
zebrafish_anatomy
ZFA:0000782
lateral wall rhombomere 4
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 4.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 7.
TAO:0000783
zebrafish_anatomy
ZFA:0000783
lateral wall rhombomere 7
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 7.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Fast muscle cell located in somite 15.
TAO:0000784
fast muscle cells somite 15
fast muscle fiber somite 15
zebrafish_anatomy
ZFA:0000784
fast muscle cell somite 15
Fast muscle cell located in somite 15.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 15
Multi-tissue structure forming the sides of the lumen of the telencephalic region of the neural tube.
TAO:0000785
lateral wall telencephalon
zebrafish_anatomy
ZFA:0000785
lateral wall telencephalic region
Multi-tissue structure forming the sides of the lumen of the telencephalic region of the neural tube.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
TAO:0000786
zebrafish_anatomy
ZFA:0000786
medial migration pathway mesenchyme
TAO:0000787
zebrafish_anatomy
ZFA:0000787
mesenchyme derived from head neural crest
Mesenchyme part of dorsal fin.
TAO:0000788
zebrafish_anatomy
ZFA:0000788
mesenchyme dorsal fin
Mesenchyme part of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Mesoderm that is part of the pectoral fin bud.
TAO:0000789
mesoderm pectoral fin buds
zebrafish_anatomy
ZFA:0000789
mesoderm pectoral fin bud
Mesoderm that is part of the pectoral fin bud.
GOC:mh
ORCiD:0000-0001-9114-8737
mesoderm pectoral fin buds
Muscle pioneer cell part of somite 10.
TAO:0000790
muscle pioneers somite 10
zebrafish_anatomy
ZFA:0000790
muscle pioneer somite 10
Muscle pioneer cell part of somite 10.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 10
Muscle pioneer cell part of somite 13.
TAO:0000791
muscle pioneers somite 13
zebrafish_anatomy
ZFA:0000791
muscle pioneer somite 13
Muscle pioneer cell part of somite 13.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 13
Muscle pioneer cell part of somite 16.
TAO:0000792
muscle pioneers somite 16
zebrafish_anatomy
ZFA:0000792
muscle pioneer somite 16
Muscle pioneer cell part of somite 16.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 16
Muscle pioneer cell part of somite 19.
TAO:0000793
muscle pioneers somite 19
zebrafish_anatomy
ZFA:0000793
muscle pioneer somite 19
Muscle pioneer cell part of somite 19.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 19
Muscle pioneer cell part of somite 22.
TAO:0000794
muscle pioneers somite 22
zebrafish_anatomy
ZFA:0000794
muscle pioneer somite 22
Muscle pioneer cell part of somite 22.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 22
Fast muscle cell located in somite 18.
TAO:0000795
fast muscle cells somite 18
fast muscle fiber somite 18
zebrafish_anatomy
ZFA:0000795
fast muscle cell somite 18
Fast muscle cell located in somite 18.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 18
Muscle pioneer cell part of somite 25.
TAO:0000796
muscle pioneers somite 25
zebrafish_anatomy
ZFA:0000796
muscle pioneer somite 25
Muscle pioneer cell part of somite 25.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 25
Muscle pioneer cell part of somite 28.
TAO:0000797
muscle pioneers somite 28
zebrafish_anatomy
ZFA:0000797
muscle pioneer somite 28
Muscle pioneer cell part of somite 28.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 28
Muscle pioneer cell part of somite 30.
TAO:0000798
muscle pioneers somite 30
zebrafish_anatomy
ZFA:0000798
muscle pioneer somite 30
Muscle pioneer cell part of somite 30.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 30
Muscle pioneer cell part of somite 6.
TAO:0000799
muscle pioneers somite 6
zebrafish_anatomy
ZFA:0000799
muscle pioneer somite 6
Muscle pioneer cell part of somite 6.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 6
Muscle pioneer cell part of somite 9.
TAO:0000800
muscle pioneers somite 9
zebrafish_anatomy
ZFA:0000800
muscle pioneer somite 9
Muscle pioneer cell part of somite 9.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 9
Portion of somite 11 that gives rise to body wall muscle masses.
TAO:0000801
zebrafish_anatomy
ZFA:0000801
myotome somite 11
Portion of somite 11 that gives rise to body wall muscle masses.
ZFIN:ZDB-PUB-961014-576
Portion of somite 15 that gives rise to body wall muscle masses.
TAO:0000802
zebrafish_anatomy
ZFA:0000802
myotome somite 15
Portion of somite 15 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 18 that gives rise to body wall muscle masses.
TAO:0000803
zebrafish_anatomy
ZFA:0000803
myotome somite 18
Portion of somite 18 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 20 that gives rise to body wall muscle masses.
TAO:0000804
zebrafish_anatomy
ZFA:0000804
myotome somite 20
Portion of somite 20 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 23 that gives rise to body wall muscle masses.
TAO:0000805
zebrafish_anatomy
ZFA:0000805
myotome somite 23
Portion of somite 23 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Fast muscle cell located in somite 20.
TAO:0000806
fast muscle cells somite 20
fast muscle fiber somite 20
zebrafish_anatomy
ZFA:0000806
fast muscle cell somite 20
Fast muscle cell located in somite 20.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 20
Portion of somite 26 that gives rise to body wall muscle masses.
TAO:0000807
zebrafish_anatomy
ZFA:0000807
myotome somite 26
Portion of somite 26 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 29 that gives rise to body wall muscle masses.
TAO:0000808
zebrafish_anatomy
ZFA:0000808
myotome somite 29
Portion of somite 29 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 4 that gives rise to body wall muscle masses.
TAO:0000809
zebrafish_anatomy
ZFA:0000809
myotome somite 4
Portion of somite 4 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 7 that gives rise to body wall muscle masses.
TAO:0000810
zebrafish_anatomy
ZFA:0000810
myotome somite 7
Portion of somite 7 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Cranial neural crest that is part of the diencephalon.
TAO:0000811
diencephalic neural crest
zebrafish_anatomy
ZFA:0000811
neural crest diencephalon
Cranial neural crest that is part of the diencephalon.
GOC:ymb
ORCiD:0000-0002-9900-7880
Cranial neural crest that is part of the telencephalon.
TAO:0000812
zebrafish_anatomy
ZFA:0000812
neural crest telencephalon
Cranial neural crest that is part of the telencephalon.
GOC:ymb
ORCiD:0000-0002-9900-7880
Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000813
neuromast infraorbital
neuromasts infraorbital
zebrafish_anatomy
ZFA:0000813
infraorbital lateral line neuromast
Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts infraorbital
Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000814
neuromast opercular
neuromasts opercular
zebrafish_anatomy
ZFA:0000814
opercular lateral line neuromast
Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts opercular
TAO:0000815
zebrafish_anatomy
ZFA:0000815
nucleus of the medial longitudinal fasciculus medulla oblongata
The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds.
TAO:0000816
zebrafish_anatomy
ZFA:0000816
oral epithelium
The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds.
ZFIN:ZDB-PUB-060921-12
ZFIN:ZDB-PUB-091204-24
Fast muscle cell located in somite 23.
TAO:0000817
fast muscle cells somite 23
fast muscle fiber somite 23
zebrafish_anatomy
ZFA:0000817
fast muscle cell somite 23
Fast muscle cell located in somite 23.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 23
Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives.
TAO:0000818
post-otic neural crest
zebrafish_anatomy
ZFA:0000818
vagal neural crest
Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives.
GOC:ymb
ORCiD:0000-0002-9900-7880
Periventricular nucleus which is contiguous with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0000819
area ventralis telencephali, nucleus postcommissuralis
postcommissural nucleus of V
zebrafish_anatomy
ZFA:0000819
postcommissural nucleus of ventral telencephalon
Periventricular nucleus which is contiguous with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
TAO:0000820
presumptive neurons neural tube
zebrafish_anatomy
ZFA:0000820
This term was obsoleted because we could not determine if it was a presumptive neuron part of the neural tube or a neuron part of the presumptive neural tube.
presumptive neuron neural tube
true
presumptive neurons neural tube
TAO:0000821
primary neurons hindbrain
zebrafish_anatomy
ZFA:0000821
primary neuron hindbrain
primary neurons hindbrain
Hindbrain segment or neuromere posterior to rhombomere 1.
TAO:0000822
r2
zebrafish_anatomy
ZFA:0000822
rhombomere 2
Hindbrain segment or neuromere posterior to rhombomere 1.
ZFIN:ZDB-PUB-961014-576
Hindbrain segment or neuromere posterior to rhombomere 4.
TAO:0000823
r5
zebrafish_anatomy
ZFA:0000823
rhombomere 5
Hindbrain segment or neuromere posterior to rhombomere 4.
ZFIN:ZDB-PUB-961014-576
Roof plate that is part of rhombomere 2.
TAO:0000824
zebrafish_anatomy
ZFA:0000824
roof plate rhombomere 2
Roof plate that is part of rhombomere 2.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Roof plate that is part of rhombomere 6.
TAO:0000825
zebrafish_anatomy
ZFA:0000825
roof plate rhombomere 6
Roof plate that is part of rhombomere 6.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to audition. From Neuroanatomy of the Zebrafish Brain.
TAO:0000826
central nucleus of semicircular torus
nucleus centralis tori semicircularis
zebrafish_anatomy
ZFA:0000826
central nucleus torus semicircularis
Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to audition. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Fast muscle cell located in somite 26.
TAO:0000827
fast muscle cells somite 26
fast muscle fiber somite 26
zebrafish_anatomy
ZFA:0000827
fast muscle cell somite 26
Fast muscle cell located in somite 26.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 26
Roof plate that is part of rhombomere 5.
TAO:0000828
zebrafish_anatomy
ZFA:0000828
roof plate rhombomere 5
Roof plate that is part of rhombomere 5.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Ventromedial region of somite 11 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000829
zebrafish_anatomy
ZFA:0000829
sclerotome somite 11
Ventromedial region of somite 11 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 14 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000830
zebrafish_anatomy
ZFA:0000830
sclerotome somite 14
Ventromedial region of somite 14 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 17 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000831
zebrafish_anatomy
ZFA:0000831
sclerotome somite 17
Ventromedial region of somite 17 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 2 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000832
zebrafish_anatomy
ZFA:0000832
sclerotome somite 2
Ventromedial region of somite 2 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 22 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000833
zebrafish_anatomy
ZFA:0000833
sclerotome somite 22
Ventromedial region of somite 22 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 25 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000834
zebrafish_anatomy
ZFA:0000834
sclerotome somite 25
Ventromedial region of somite 25 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 28 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000835
zebrafish_anatomy
ZFA:0000835
sclerotome somite 28
Ventromedial region of somite 28 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 30 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000836
zebrafish_anatomy
ZFA:0000836
sclerotome somite 30
Ventromedial region of somite 30 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 6 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000837
zebrafish_anatomy
ZFA:0000837
sclerotome somite 6
Ventromedial region of somite 6 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Fast muscle cell located in somite 29.
TAO:0000838
fast muscle cells somite 29
fast muscle fiber somite 29
zebrafish_anatomy
ZFA:0000838
fast muscle cell somite 29
Fast muscle cell located in somite 29.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 29
Ventromedial region of somite 9 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000839
zebrafish_anatomy
ZFA:0000839
sclerotome somite 9
Ventromedial region of somite 9 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 11.
TAO:0000840
slow muscle cells somite 11
zebrafish_anatomy
ZFA:0000840
slow muscle cell somite 11
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 11.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 11
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 14.
TAO:0000841
slow muscle cells somite 14
zebrafish_anatomy
ZFA:0000841
slow muscle cell somite 14
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 14.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 14
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 17.
TAO:0000842
slow muscle cells somite 17
zebrafish_anatomy
ZFA:0000842
slow muscle cell somite 17
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 17.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 17
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 2.
TAO:0000843
slow muscle cells somite 2
zebrafish_anatomy
ZFA:0000843
slow muscle cell somite 2
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 2.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 2
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 22.
TAO:0000844
slow muscle cells somite 22
zebrafish_anatomy
ZFA:0000844
slow muscle cell somite 22
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 22.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 22
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 25.
TAO:0000845
slow muscle cells somite 25
zebrafish_anatomy
ZFA:0000845
slow muscle cell somite 25
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 25.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 25
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 28.
TAO:0000846
slow muscle cells somite 28
zebrafish_anatomy
ZFA:0000846
slow muscle cell somite 28
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 28.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 28
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 30.
TAO:0000847
slow muscle cells somite 30
zebrafish_anatomy
ZFA:0000847
slow muscle cell somite 30
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 30.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 30
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 6.
TAO:0000848
slow muscle cells somite 6
zebrafish_anatomy
ZFA:0000848
slow muscle cell somite 6
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 6.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 6
Fast muscle cell located in somite 4.
TAO:0000849
fast muscle cells somite 4
fast muscle fiber somite 4
zebrafish_anatomy
ZFA:0000849
fast muscle cell somite 4
Fast muscle cell located in somite 4.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 4
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 9.
TAO:0000850
slow muscle cells somite 9
zebrafish_anatomy
ZFA:0000850
slow muscle cell somite 9
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 9.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 9
Undifferentiated mesodermal component of early trunk segment 12 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000851
zebrafish_anatomy
ZFA:0000851
somite 12
Undifferentiated mesodermal component of early trunk segment 12 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 15 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000852
zebrafish_anatomy
ZFA:0000852
somite 15
Undifferentiated mesodermal component of early trunk segment 15 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk or tail segment 18 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000853
zebrafish_anatomy
ZFA:0000853
somite 18
Undifferentiated mesodermal component of early trunk or tail segment 18 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail 21 segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000854
zebrafish_anatomy
ZFA:0000854
somite 21
Undifferentiated mesodermal component of early tail 21 segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 24 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000855
zebrafish_anatomy
ZFA:0000855
somite 24
Undifferentiated mesodermal component of early tail segment 24 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 28 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000856
zebrafish_anatomy
ZFA:0000856
somite 28
Undifferentiated mesodermal component of early tail segment 28 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 4 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000857
zebrafish_anatomy
ZFA:0000857
somite 4
Undifferentiated mesodermal component of early trunk segment 4 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 8 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000858
zebrafish_anatomy
ZFA:0000858
somite 8
Undifferentiated mesodermal component of early trunk segment 8 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Modified hemal arches and spines that support the caudal fin. In developing fish they articulate with preural 1, ural1 and ural2; in adults they articulate with the urostyle.
TAO:0000859
ha(pu)
hemal arch (preural)
specialized haemal arch and spine
specialized hemal arches and spines
zebrafish_anatomy
ZFA:0000859
specialized hemal arch and spine
Modified hemal arches and spines that support the caudal fin. In developing fish they articulate with preural 1, ural1 and ural2; in adults they articulate with the urostyle.
ZFIN:ZDB-PUB-011008-1
hemal arch (preural)
ZFIN:ZDB-PUB-011008-1
specialized hemal arches and spines
Fast muscle cell located in somite 7.
TAO:0000860
fast muscle cells somite 7
fast muscle fiber somite 7
zebrafish_anatomy
ZFA:0000860
fast muscle cell somite 7
Fast muscle cell located in somite 7.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 7
Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. All the oblique extraocular muscles originate together from the anterior ethmoid plate. The ventral oblique is innervated by the oculomotor nerve.
TAO:0000861
inferior oblique muscle
ventral oblique extraocular muscles
zebrafish_anatomy
ZFA:0000861
Mature form at Hatching:Pec-fin.
ventral oblique extraocular muscle
Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. All the oblique extraocular muscles originate together from the anterior ethmoid plate. The ventral oblique is innervated by the oculomotor nerve.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111205-9
inferior oblique muscle
ZFIN:ZDB-PUB-110512-18
ventral oblique extraocular muscles
Median fin skeleton supporting the caudal fin.
TAO:0000862
zebrafish_anatomy
ZFA:0000862
caudal fin skeleton
Median fin skeleton supporting the caudal fin.
TAO:curator
Anatomical cluster that is part of the cranium and composed of dermally derived bones.
TAO:0000863
dermal bone cranium
zebrafish_anatomy
ZFA:0000863
dermatocranium
Anatomical cluster that is part of the cranium and composed of dermally derived bones.
GOC:mh
ORCiD:0000-0001-9114-8737
The epaxial region of somite 1 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000864
zebrafish_anatomy
ZFA:0000864
epaxial region somite 1
The epaxial region of somite 1 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 12 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000865
zebrafish_anatomy
ZFA:0000865
epaxial region somite 12
The epaxial region of somite 12 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 15 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000866
zebrafish_anatomy
ZFA:0000866
epaxial region somite 15
The epaxial region of somite 15 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 18 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000867
zebrafish_anatomy
ZFA:0000867
epaxial region somite 18
The epaxial region of somite 18 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 20 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum
TAO:0000868
zebrafish_anatomy
ZFA:0000868
epaxial region somite 20
The epaxial region of somite 20 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 23 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000869
zebrafish_anatomy
ZFA:0000869
epaxial region somite 23
The epaxial region of somite 23 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 26 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000870
zebrafish_anatomy
ZFA:0000870
epaxial region somite 26
The epaxial region of somite 26 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Floor plate that is part of the diencephalon.
TAO:0000871
floorplate diencephalon
zebrafish_anatomy
ZFA:0000871
floor plate diencephalic region
Floor plate that is part of the diencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
The epaxial region of somite 29 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000872
zebrafish_anatomy
ZFA:0000872
epaxial region somite 29
The epaxial region of somite 29 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 4 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000873
zebrafish_anatomy
ZFA:0000873
epaxial region somite 4
The epaxial region of somite 4 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 7 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000874
zebrafish_anatomy
ZFA:0000874
epaxial region somite 7
The epaxial region of somite 7 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Cranial neural crest that is part of the facial region.
ZFA:0001194
TAO:0000875
zebrafish_anatomy
ZFA:0000875
facial neural crest
true
Cranial neural crest that is part of the facial region.
GOC:ymb
ORCiD:0000-0002-9900-7880
Fast muscle cell located in somite 11.
TAO:0000876
fast muscle cells somite 11
fast muscle fiber somite 11
zebrafish_anatomy
ZFA:0000876
fast muscle cell somite 11
Fast muscle cell located in somite 11.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 11
Fast muscle cell located in somite 14.
TAO:0000877
fast muscle cells somite 14
fast muscle fiber somite 14
zebrafish_anatomy
ZFA:0000877
fast muscle cell somite 14
Fast muscle cell located in somite 14.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 14
Fast muscle cell located in somite 17.
TAO:0000878
fast muscle cells somite 17
fast muscle fiber somite 17
zebrafish_anatomy
ZFA:0000878
fast muscle cell somite 17
Fast muscle cell located in somite 17.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 17
Fast muscle cell located in somite 2.
TAO:0000879
fast muscle cells somite 2
fast muscle fiber somite 2
zebrafish_anatomy
ZFA:0000879
fast muscle cell somite 2
Fast muscle cell located in somite 2.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 2
Fast muscle cell located in somite 22.
TAO:0000880
fast muscle cells somite 22
fast muscle fiber somite 22
zebrafish_anatomy
ZFA:0000880
fast muscle cell somite 22
Fast muscle cell located in somite 22.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 22
Fast muscle cell located in somite 25.
TAO:0000881
fast muscle cells somite 25
fast muscle fiber somite 25
zebrafish_anatomy
ZFA:0000881
fast muscle cell somite 25
Fast muscle cell located in somite 25.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 25
Floor plate that is part of the rhombomere 1.
TAO:0000882
floor plate r1
zebrafish_anatomy
ZFA:0000882
floor plate rhombomere 1
Floor plate that is part of the rhombomere 1.
GOC:mh
ORCiD:0000-0001-9114-8737
Fast muscle cell located in somite 28.
TAO:0000883
fast muscle cells somite 28
fast muscle fiber somite 28
zebrafish_anatomy
ZFA:0000883
fast muscle cell somite 28
Fast muscle cell located in somite 28.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 28
Fast muscle cell located in somite 30.
TAO:0000884
fast muscle cells somite 30
fast muscle fiber somite 30
zebrafish_anatomy
ZFA:0000884
fast muscle cell somite 30
Fast muscle cell located in somite 30.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 30
Fast muscle cell located in somite 6.
TAO:0000885
fast muscle cells somite 6
fast muscle fiber somite 6
zebrafish_anatomy
ZFA:0000885
fast muscle cell somite 6
Fast muscle cell located in somite 6.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 6
Fast muscle cell located in somite 9.
TAO:0000886
fast muscle cells somite 9
fast muscle fiber somite 9
zebrafish_anatomy
ZFA:0000886
fast muscle cell somite 9
Fast muscle cell located in somite 9.
GOC:ymb
ORCiD:0000-0002-9900-7880
fast muscle cells somite 9
Floor plate that is part of the neural rod.
TAO:0000887
floorplate neural rod
zebrafish_anatomy
ZFA:0000887
floor plate neural rod
Floor plate that is part of the neural rod.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Floor plate that is part of the rhombomere 3.
TAO:0000888
floor plate r3
floorplate r3
zebrafish_anatomy
ZFA:0000888
floor plate rhombomere 3
Floor plate that is part of the rhombomere 3.
GOC:mh
ORCiD:0000-0001-9114-8737
Floor plate that is part of the rhombomere 6.
TAO:0000889
floor plate r6
floorplate r6
zebrafish_anatomy
ZFA:0000889
floor plate rhombomere 6
Floor plate that is part of the rhombomere 6.
GOC:mh
ORCiD:0000-0001-9114-8737
Floor plate that is part of the spinal cord.
TAO:0000890
floorplate spinal cord
zebrafish_anatomy
ZFA:0000890
floor plate spinal cord region
Floor plate that is part of the spinal cord.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
The hypaxial region of somite 1 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000891
zebrafish_anatomy
ZFA:0000891
hypaxial region somite 1
The hypaxial region of somite 1 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 12 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000892
zebrafish_anatomy
ZFA:0000892
hypaxial region somite 12
The hypaxial region of somite 12 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Floor plate that is part of the rhombomere 4.
TAO:0000893
floor plate r4
floorplate r4
zebrafish_anatomy
ZFA:0000893
floor plate rhombomere 4
Floor plate that is part of the rhombomere 4.
GOC:mh
ORCiD:0000-0001-9114-8737
The hypaxial region of somite 15 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000894
zebrafish_anatomy
ZFA:0000894
hypaxial region somite 15
The hypaxial region of somite 15 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 18 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000895
zebrafish_anatomy
ZFA:0000895
hypaxial region somite 18
The hypaxial region of somite 18 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 20 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000896
zebrafish_anatomy
ZFA:0000896
hypaxial region somite 20
The hypaxial region of somite 20 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 23 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000897
zebrafish_anatomy
ZFA:0000897
hypaxial region somite 23
The hypaxial region of somite 23 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 26 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000898
zebrafish_anatomy
ZFA:0000898
hypaxial region somite 26
The hypaxial region of somite 26 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 29 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000899
zebrafish_anatomy
ZFA:0000899
hypaxial region somite 29
The hypaxial region of somite 29 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 4 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000900
zebrafish_anatomy
ZFA:0000900
hypaxial region somite 4
The hypaxial region of somite 4 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 7 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000901
zebrafish_anatomy
ZFA:0000901
hypaxial region somite 7
The hypaxial region of somite 7 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Musculature associated with the hypurals.
TAO:0000902
hypural muscles
zebrafish_anatomy
ZFA:0000902
hypural muscle
Musculature associated with the hypurals.
GOC:cvs
ORCiD:0000-0002-2244-7917
hypural muscles
TAO:0000903
zebrafish_anatomy
ZFA:0000903
ZDB-PUB-010601-11 says there are 4 sub-nuclei.
interpeduncular nucleus tegmentum
Floor plate that is part of the rhombomere 7.
TAO:0000904
floor plate r7
floorplate r7
zebrafish_anatomy
ZFA:0000904
floor plate rhombomere 7
Floor plate that is part of the rhombomere 7.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0000905
zebrafish_anatomy
ZFA:0000905
lateral mesenchyme derived from mesoderm
Multi-tissue structure forming the sides of the lumen of the midbrain region of the neural tube.
TAO:0000906
lateral wall midbrain
zebrafish_anatomy
ZFA:0000906
lateral wall midbrain region
Multi-tissue structure forming the sides of the lumen of the midbrain region of the neural tube.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 2.
TAO:0000907
zebrafish_anatomy
ZFA:0000907
lateral wall rhombomere 2
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 2.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 5.
TAO:0000908
zebrafish_anatomy
ZFA:0000908
lateral wall rhombomere 5
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 5.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 8.
TAO:0000909
zebrafish_anatomy
ZFA:0000909
lateral wall rhombomere 8
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 8.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
TAO:0000910
medial forebrain bundles telencephalon
zebrafish_anatomy
ZFA:0000910
medial forebrain bundle telencephalon
medial forebrain bundles telencephalon
ZFA:0001647
zebrafish_anatomy
ZFA:0000911
medial pterygiophores dorsal fin
true
Mesenchyme part of median fin fold.
TAO:0000912
zebrafish_anatomy
ZFA:0000912
mesenchyme median fin fold
Mesenchyme part of median fin fold.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue which is part of the valvula cerebelli and contains neuronal cell bodies.
TAO:0000913
zebrafish_anatomy
ZFA:0000913
molecular layer valvula cerebelli
Portion of tissue which is part of the valvula cerebelli and contains neuronal cell bodies.
GOC:mh
ORCiD:0000-0001-9114-8737
Floor plate that is part of the telencephalon.
TAO:0000914
floorplate telencephalon
zebrafish_anatomy
ZFA:0000914
floor plate telencephalic region
Floor plate that is part of the telencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
Muscle pioneer cell part of somite 11.
TAO:0000915
muscle pioneers somite 11
zebrafish_anatomy
ZFA:0000915
muscle pioneer somite 11
Muscle pioneer cell part of somite 11.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 11
Muscle pioneer cell part of somite 14.
TAO:0000916
muscle pioneers somite 14
zebrafish_anatomy
ZFA:0000916
muscle pioneer somite 14
Muscle pioneer cell part of somite 14.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 14
Muscle pioneer cell part of somite 17.
TAO:0000917
muscle pioneers somite 17
zebrafish_anatomy
ZFA:0000917
muscle pioneer somite 17
Muscle pioneer cell part of somite 17.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 17
Muscle pioneer cell part of somite 20.
TAO:0000918
muscle pioneers somite 20
zebrafish_anatomy
ZFA:0000918
muscle pioneer somite 20
Muscle pioneer cell part of somite 20.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 20
Muscle pioneer cell part of somite 23.
TAO:0000919
muscle pioneers somite 23
zebrafish_anatomy
ZFA:0000919
muscle pioneer somite 23
Muscle pioneer cell part of somite 23.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 23
Muscle pioneer cell part of somite 26.
TAO:0000920
muscle pioneers somite 26
zebrafish_anatomy
ZFA:0000920
muscle pioneer somite 26
Muscle pioneer cell part of somite 26.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 26
Muscle pioneer cell part of somite 29.
TAO:0000921
muscle pioneers somite 29
zebrafish_anatomy
ZFA:0000921
muscle pioneer somite 29
Muscle pioneer cell part of somite 29.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 29
Muscle pioneer cell part of somite 4.
TAO:0000922
muscle pioneers somite 4
zebrafish_anatomy
ZFA:0000922
muscle pioneer somite 4
Muscle pioneer cell part of somite 4.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 4
Muscle pioneer cell part of somite 7.
TAO:0000923
muscle pioneers somite 7
zebrafish_anatomy
ZFA:0000923
muscle pioneer somite 7
Muscle pioneer cell part of somite 7.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 7
Portion of somite 1 that gives rise to body wall muscle masses.
TAO:0000924
zebrafish_anatomy
ZFA:0000924
myotome somite 1
Portion of somite 1 that gives rise to body wall muscle masses.
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 10 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000925
zebrafish_anatomy
ZFA:0000925
hypaxial region somite 10
The hypaxial region of somite 10 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 12 that gives rise to body wall muscle masses.
TAO:0000926
zebrafish_anatomy
ZFA:0000926
myotome somite 12
Portion of somite 12 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 16 that gives rise to body wall muscle masses.
TAO:0000927
zebrafish_anatomy
ZFA:0000927
myotome somite 16
Portion of somite 16 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 19 that gives rise to body wall muscle masses.
TAO:0000928
zebrafish_anatomy
ZFA:0000928
myotome somite 19
Portion of somite 19 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 21 that gives rise to body wall muscle masses.
TAO:0000929
zebrafish_anatomy
ZFA:0000929
myotome somite 21
Portion of somite 21 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 24 that gives rise to body wall muscle masses.
TAO:0000930
zebrafish_anatomy
ZFA:0000930
myotome somite 24
Portion of somite 24 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 27 that gives rise to body wall muscle masses.
TAO:0000931
zebrafish_anatomy
ZFA:0000931
myotome somite 27
Portion of somite 27 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 3 that gives rise to body wall muscle masses.
TAO:0000932
zebrafish_anatomy
ZFA:0000932
myotome somite 3
Portion of somite 3 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 5 that gives rise to body wall muscle masses.
TAO:0000933
zebrafish_anatomy
ZFA:0000933
myotome somite 5
Portion of somite 5 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 8 that gives rise to body wall muscle masses.
TAO:0000934
zebrafish_anatomy
ZFA:0000934
myotome somite 8
Portion of somite 8 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Neural crest that is part of the midbrain.
TAO:0000935
mesencephalic neural crest
zebrafish_anatomy
ZFA:0000935
neural crest midbrain
Neural crest that is part of the midbrain.
GOC:ymb
ORCiD:0000-0002-9900-7880
mesencephalic neural crest
GOC:ymb
ORCiD:0000-0002-9900-7880
Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally.
TAO:0000936
dorsal fin distal radials
zebrafish_anatomy
ZFA:0000936
dorsal fin distal radial
Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally.
GOC:cvs
ORCiD:0000-0002-2244-7917
dorsal fin distal radials
The hypaxial region of somite 13 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000937
zebrafish_anatomy
ZFA:0000937
hypaxial region somite 13
The hypaxial region of somite 13 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord.
TAO:0000938
canalis centralis
neural lumen
zebrafish_anatomy
ZFA:0000938
central canal
Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord.
GOC:mh
ORCiD:0000-0001-9114-8737
Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000939
neuromast middle
neuromasts middle
zebrafish_anatomy
ZFA:0000939
middle lateral line neuromast
Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts middle
Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000940
neuromast posterior
neuromasts posterior
zebrafish_anatomy
ZFA:0000940
posterior lateral line neuromast
Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts posterior
Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure, and extends axons into the medial longitudinal fasciculus. From Neuroanatomy of the Zebrafish Brain.
TAO:0000941
zebrafish_anatomy
ZFA:0000941
nucleus of the medial longitudinal fasciculus synencephalon
Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure, and extends axons into the medial longitudinal fasciculus. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
true
Skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid.
TAO:0000943
zebrafish_anatomy
ZFA:0000943
pectoral fin skeleton
Skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid.
TAO:curator
One of eight distinct lateral lines in the 4-day larva. The posterior lateral line runs along the horizontal myoseptum from the otic vessicle to the caudal fin. Lateral lines form a sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0000944
pll
zebrafish_anatomy
midbody lateral line
midtrunk line
ZFA:0000944
posterior lateral line
One of eight distinct lateral lines in the 4-day larva. The posterior lateral line runs along the horizontal myoseptum from the otic vessicle to the caudal fin. Lateral lines form a sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-110811-14
true
The hypaxial region of somite 16 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000946
zebrafish_anatomy
ZFA:0000946
hypaxial region somite 16
The hypaxial region of somite 16 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials.
TAO:0000947
dorsal fin proximal radials
zebrafish_anatomy
ZFA:0000947
dorsal fin proximal radial
Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials.
GOC:cvs
ORCiD:0000-0002-2244-7917
dorsal fin proximal radials
Hindbrain segment or neuromere posterior to rhombomere 2.
TAO:0000948
r3
zebrafish_anatomy
ZFA:0000948
rhombomere 3
Hindbrain segment or neuromere posterior to rhombomere 2.
ZFIN:ZDB-PUB-961014-576
Hindbrain segment or neuromere posterior to rhombomere 6.
TAO:0000949
r7
zebrafish_anatomy
ZFA:0000949
rhombomere 7
Hindbrain segment or neuromere posterior to rhombomere 6.
ZFIN:ZDB-PUB-961014-576
Roof plate that is part of rhombomere 3.
TAO:0000950
zebrafish_anatomy
ZFA:0000950
roof plate rhombomere 3
Roof plate that is part of rhombomere 3.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Roof plate that is part of rhombomere 7.
TAO:0000951
zebrafish_anatomy
ZFA:0000951
roof plate rhombomere 7
Roof plate that is part of rhombomere 7.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Ventromedial region of somite 1 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000952
zebrafish_anatomy
ZFA:0000952
sclerotome somite 1
Ventromedial region of somite 1 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 12 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000953
zebrafish_anatomy
ZFA:0000953
sclerotome somite 12
Ventromedial region of somite 12 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 15 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000954
zebrafish_anatomy
ZFA:0000954
sclerotome somite 15
Ventromedial region of somite 15 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 18 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000955
zebrafish_anatomy
ZFA:0000955
sclerotome somite 18
Ventromedial region of somite 18 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 20 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000956
zebrafish_anatomy
ZFA:0000956
sclerotome somite 20
Ventromedial region of somite 20 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
The hypaxial region of somite 19 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000957
zebrafish_anatomy
ZFA:0000957
hypaxial region somite 19
The hypaxial region of somite 19 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Ventromedial region of somite 23 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000958
zebrafish_anatomy
ZFA:0000958
sclerotome somite 23
Ventromedial region of somite 23 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 26 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000959
zebrafish_anatomy
ZFA:0000959
sclerotome somite 26
Ventromedial region of somite 26 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 29 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000960
zebrafish_anatomy
ZFA:0000960
sclerotome somite 29
Ventromedial region of somite 29 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 4 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000961
zebrafish_anatomy
ZFA:0000961
sclerotome somite 4
Ventromedial region of somite 4 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 7 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0000962
zebrafish_anatomy
ZFA:0000962
sclerotome somite 7
Ventromedial region of somite 7 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 1.
TAO:0000963
slow muscle cells somite 1
zebrafish_anatomy
ZFA:0000963
slow muscle cell somite 1
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 1.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961219-12
slow muscle cells somite 1
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 12.
TAO:0000964
slow muscle cells somite 12
zebrafish_anatomy
ZFA:0000964
slow muscle cell somite 12
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 12.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 12
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 15.
TAO:0000965
slow muscle cells somite 15
zebrafish_anatomy
ZFA:0000965
slow muscle cell somite 15
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 15.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 15
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 18.
TAO:0000966
slow muscle cells somite 18
zebrafish_anatomy
ZFA:0000966
slow muscle cell somite 18
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 18.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 18
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 20.
TAO:0000967
slow muscle cells somite 20
zebrafish_anatomy
ZFA:0000967
slow muscle cell somite 20
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 20.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 20
The hypaxial region of somite 21 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000968
zebrafish_anatomy
ZFA:0000968
hypaxial region somite 21
The hypaxial region of somite 21 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 23.
TAO:0000969
slow muscle cells somite 23
zebrafish_anatomy
ZFA:0000969
slow muscle cell somite 23
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 23.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 23
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 26.
TAO:0000970
slow muscle cells somite 26
zebrafish_anatomy
ZFA:0000970
slow muscle cell somite 26
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 26.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 26
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 29.
TAO:0000971
slow muscle cells somite 29
zebrafish_anatomy
ZFA:0000971
slow muscle cell somite 29
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 29.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 29
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 4.
TAO:0000972
slow muscle cells somite 4
zebrafish_anatomy
ZFA:0000972
slow muscle cell somite 4
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 4.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 4
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 7.
TAO:0000973
slow muscle cells somite 7
zebrafish_anatomy
ZFA:0000973
slow muscle cell somite 7
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 7.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 7
Undifferentiated mesodermal component of early trunk segment 10 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000974
zebrafish_anatomy
ZFA:0000974
somite 10
Undifferentiated mesodermal component of early trunk segment 10 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 13 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000975
zebrafish_anatomy
ZFA:0000975
somite 13
Undifferentiated mesodermal component of early trunk segment 13 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 16 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000976
zebrafish_anatomy
ZFA:0000976
somite 16
Undifferentiated mesodermal component of early trunk segment 16 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk or tail segment 19 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000977
zebrafish_anatomy
ZFA:0000977
somite 19
Undifferentiated mesodermal component of early trunk or tail segment 19 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 22 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000978
zebrafish_anatomy
ZFA:0000978
somite 22
Undifferentiated mesodermal component of early tail segment 22 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 24 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000979
zebrafish_anatomy
ZFA:0000979
hypaxial region somite 24
The hypaxial region of somite 24 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 25 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000980
zebrafish_anatomy
ZFA:0000980
somite 25
Undifferentiated mesodermal component of early tail segment 25 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early tail segment 29 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000981
zebrafish_anatomy
ZFA:0000981
somite 29
Undifferentiated mesodermal component of early tail segment 29 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 6 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000982
zebrafish_anatomy
ZFA:0000982
somite 6
Undifferentiated mesodermal component of early trunk segment 6 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Undifferentiated mesodermal component of early trunk segment 9 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
TAO:0000983
zebrafish_anatomy
ZFA:0000983
somite 9
Undifferentiated mesodermal component of early trunk segment 9 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
TAO:0000984
zebrafish_anatomy
ZFA:0000984
superior reticular formation tegmentum
TAO:0000985
zebrafish_anatomy
ZFA:0000985
ventral rhombencephalic commissure medulla oblongata
The hypaxial region of somite 27 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000986
zebrafish_anatomy
ZFA:0000986
hypaxial region somite 27
The hypaxial region of somite 27 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 3 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000987
zebrafish_anatomy
ZFA:0000987
hypaxial region somite 3
The hypaxial region of somite 3 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 5 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000988
zebrafish_anatomy
ZFA:0000988
hypaxial region somite 5
The hypaxial region of somite 5 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The hypaxial region of somite 8 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
TAO:0000989
zebrafish_anatomy
ZFA:0000989
hypaxial region somite 8
The hypaxial region of somite 8 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
TAO:0000990
zebrafish_anatomy
ZFA:0000990
intermediate mesenchyme
The epaxial region of somite 10 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0000991
zebrafish_anatomy
ZFA:0000991
epaxial region somite 10
The epaxial region of somite 10 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
TAO:0000992
zebrafish_anatomy
ZFA:0000992
lateral migration pathway mesenchyme
Portion of tissue located at either side of the neural rod.
TAO:0000993
zebrafish_anatomy
ZFA:0000993
lateral wall neural rod
Portion of tissue located at either side of the neural rod.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 3.
TAO:0000994
zebrafish_anatomy
ZFA:0000994
lateral wall rhombomere 3
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 3.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 6.
TAO:0000995
zebrafish_anatomy
ZFA:0000995
lateral wall rhombomere 6
Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 6.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure forming the sides of the lumen of the spinal cord.
TAO:0000996
zebrafish_anatomy
ZFA:0000996
lateral wall spinal cord
Multi-tissue structure forming the sides of the lumen of the spinal cord.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Sensory trigeminal nucleus located at the end of the medulla oblongata.
TAO:0000997
medial funicular nucleus trigeminal nuclei
zebrafish_anatomy
ZFA:0000997
medial funicular nucleus trigeminal nucleus
Sensory trigeminal nucleus located at the end of the medulla oblongata.
ZFIN:ZDB-PUB-961014-1280
medial funicular nucleus trigeminal nuclei
TAO:0000998
zebrafish_anatomy
ZFA:0000998
mesenchyme derived from head mesoderm
TAO:0000999
zebrafish_anatomy
ZFA:0000999
mesenchyme derived from trunk neural crest
Mesenchyme that is part of the pectoral fin.
TAO:0001000
mesenchyme pectoral fins
zebrafish_anatomy
ZFA:0001000
mesenchyme pectoral fin
Mesenchyme that is part of the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
mesenchyme pectoral fins
The epaxial region of somite 13 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0001001
zebrafish_anatomy
ZFA:0001001
epaxial region somite 13
The epaxial region of somite 13 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
TAO:0001002
zebrafish_anatomy
ZFA:0001002
Consider post-composing ZFA:0009052 motor neuron with GO:0030424 axon
peripheral motor axons
true
Muscle pioneer cell part of somite 12.
TAO:0001003
muscle pioneers somite 12
zebrafish_anatomy
ZFA:0001003
muscle pioneer somite 12
Muscle pioneer cell part of somite 12.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 12
Muscle pioneer cell part of somite 15.
TAO:0001004
muscle pioneers somite 15
zebrafish_anatomy
ZFA:0001004
muscle pioneer somite 15
Muscle pioneer cell part of somite 15.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 15
Muscle pioneer cell part of somite 18.
TAO:0001005
muscle pioneers somite 18
zebrafish_anatomy
ZFA:0001005
muscle pioneer somite 18
Muscle pioneer cell part of somite 18.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 18
Muscle pioneer cell part of somite 21.
TAO:0001006
muscle pioneers somite 21
zebrafish_anatomy
ZFA:0001006
muscle pioneer somite 21
Muscle pioneer cell part of somite 21.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 21
Muscle pioneer cell part of somite 24.
TAO:0001007
muscle pioneers somite 24
zebrafish_anatomy
ZFA:0001007
muscle pioneer somite 24
Muscle pioneer cell part of somite 24.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 24
Muscle pioneer cell part of somite 27.
TAO:0001008
muscle pioneers somite 27
zebrafish_anatomy
ZFA:0001008
muscle pioneer somite 27
Muscle pioneer cell part of somite 27.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 27
Muscle pioneer cell part of somite 3.
TAO:0001009
muscle pioneers somite 3
zebrafish_anatomy
ZFA:0001009
muscle pioneer somite 3
Muscle pioneer cell part of somite 3.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 3
Muscle pioneer cell part of somite 5.
TAO:0001010
muscle pioneers somite 5
zebrafish_anatomy
ZFA:0001010
muscle pioneer somite 5
Muscle pioneer cell part of somite 5.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 5
Muscle pioneer cell part of somite 8.
TAO:0001011
muscle pioneers somite 8
zebrafish_anatomy
ZFA:0001011
muscle pioneer somite 8
Muscle pioneer cell part of somite 8.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
muscle pioneers somite 8
The epaxial region of somite 16 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0001012
zebrafish_anatomy
ZFA:0001012
epaxial region somite 16
The epaxial region of somite 16 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 10 that gives rise to body wall muscle masses.
TAO:0001013
zebrafish_anatomy
ZFA:0001013
myotome somite 10
Portion of somite 10 that gives rise to body wall muscle masses.
ZFIN:ZDB-PUB-961014-576
Portion of somite 13 that gives rise to body wall muscle masses.
TAO:0001014
zebrafish_anatomy
ZFA:0001014
myotome somite 13
Portion of somite 13 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 17 that gives rise to body wall muscle masses.
TAO:0001015
zebrafish_anatomy
ZFA:0001015
myotome somite 17
Portion of somite 17 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 2 that gives rise to body wall muscle masses.
TAO:0001016
zebrafish_anatomy
ZFA:0001016
myotome somite 2
Portion of somite 2 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 22 that gives rise to body wall muscle masses.
TAO:0001017
zebrafish_anatomy
ZFA:0001017
myotome somite 22
Portion of somite 22 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 25 that gives rise to body wall muscle masses.
TAO:0001018
zebrafish_anatomy
ZFA:0001018
myotome somite 25
Portion of somite 25 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 28 that gives rise to body wall muscle masses.
TAO:0001019
zebrafish_anatomy
ZFA:0001019
myotome somite 28
Portion of somite 28 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 30 that gives rise to body wall muscle masses.
TAO:0001020
zebrafish_anatomy
ZFA:0001020
myotome somite 30
Portion of somite 30 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 6 that gives rise to body wall muscle masses.
TAO:0001021
zebrafish_anatomy
ZFA:0001021
myotome somite 6
Portion of somite 6 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Portion of somite 9 that gives rise to body wall muscle masses.
TAO:0001022
zebrafish_anatomy
ZFA:0001022
myotome somite 9
Portion of somite 9 that gives rise to body wall muscle masses.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The epaxial region of somite 19 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum
TAO:0001023
zebrafish_anatomy
ZFA:0001023
epaxial region somite 19
The epaxial region of somite 19 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Neural crest that is part of the trunk.
TAO:0001024
zebrafish_anatomy
ZFA:0001024
trunk neural crest
Neural crest that is part of the trunk.
GOC:ymb
ORCiD:0000-0002-9900-7880
Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0001025
neuromast occipital
neuromasts occipital
zebrafish_anatomy
ZFA:0001025
occipital lateral line neuromast
Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts occipital
Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0001026
neuromast supraorbital
neuromasts supraorbital
zebrafish_anatomy
ZFA:0001026
supraorbital lateral line neuromast
Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
neuromasts supraorbital
Space within the oral region.
TAO:0001027
buccal cavity
buccal chamber
zebrafish_anatomy
ZFA:0001027
oral cavity
Space within the oral region.
GOC:mh
ORCiD:0000-0001-9114-8737
The paired bony lateral extensions off the parhypural.
TAO:0001028
hypurapophyses
parhypurapophysis
parhypurapophysis process
zebrafish_anatomy
ZFA:0001028
hypurapophysis
The paired bony lateral extensions off the parhypural.
ZFIN:ZDB-PUB-011008-1
hypurapophyses
Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf.
TAO:0001029
ILM
inner limiting membranes
zebrafish_anatomy
ZFA:0001029
inner limiting membrane
Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-071023-7
ZFIN:ZDB-PUB-120529-3
inner limiting membranes
The epaxial region of somite 21 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0001030
zebrafish_anatomy
ZFA:0001030
epaxial region somite 21
The epaxial region of somite 21 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Anteriormost hindbrain segment or neuromere.
TAO:0001031
r1
zebrafish_anatomy
ZFA:0001031
rhombomere 1
Anteriormost hindbrain segment or neuromere.
ZFIN:ZDB-PUB-961014-576
Hindbrain segment or neuromere posterior to rhombomere 3.
TAO:0001032
r4
zebrafish_anatomy
ZFA:0001032
rhombomere 4
Hindbrain segment or neuromere posterior to rhombomere 3.
ZFIN:ZDB-PUB-961014-576
Roof plate that is part of rhombomere 1.
TAO:0001033
zebrafish_anatomy
ZFA:0001033
roof plate rhombomere 1
Roof plate that is part of rhombomere 1.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Roof plate that is part of rhombomere 4.
TAO:0001034
zebrafish_anatomy
ZFA:0001034
roof plate rhombomere 4
Roof plate that is part of rhombomere 4.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Roof plate that is part of rhombomere 8.
TAO:0001035
zebrafish_anatomy
ZFA:0001035
roof plate rhombomere 8
Roof plate that is part of rhombomere 8.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Ventromedial region of somite 10 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001036
zebrafish_anatomy
ZFA:0001036
sclerotome somite 10
Ventromedial region of somite 10 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 13 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001037
zebrafish_anatomy
ZFA:0001037
sclerotome somite 13
Ventromedial region of somite 13 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 16 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001038
zebrafish_anatomy
ZFA:0001038
sclerotome somite 16
Ventromedial region of somite 16 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 19 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001039
zebrafish_anatomy
ZFA:0001039
sclerotome somite 19
Ventromedial region of somite 19 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
The epaxial region of somite 24 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
TAO:0001040
zebrafish_anatomy
ZFA:0001040
epaxial region somite 24
The epaxial region of somite 24 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Ventromedial region of somite 21 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001041
zebrafish_anatomy
ZFA:0001041
sclerotome somite 21
Ventromedial region of somite 21 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 24 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001042
zebrafish_anatomy
ZFA:0001042
sclerotome somite 24
Ventromedial region of somite 24 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 27 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001043
zebrafish_anatomy
ZFA:0001043
sclerotome somite 27
Ventromedial region of somite 27 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 3 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001044
zebrafish_anatomy
ZFA:0001044
sclerotome somite 3
Ventromedial region of somite 3 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 5 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001045
zebrafish_anatomy
ZFA:0001045
sclerotome somite 5
Ventromedial region of somite 5 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
Ventromedial region of somite 8 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
TAO:0001046
zebrafish_anatomy
ZFA:0001046
sclerotome somite 8
Ventromedial region of somite 8 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
ZFIN:ZDB-PUB-970213-3
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 10.
TAO:0001047
slow muscle cells somite 10
zebrafish_anatomy
ZFA:0001047
slow muscle cell somite 10
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 10.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 10
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 13.
TAO:0001048
slow muscle cells somite 13
zebrafish_anatomy
ZFA:0001048
slow muscle cell somite 13
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 13.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 13
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 16.
TAO:0001049
slow muscle cells somite 16
zebrafish_anatomy
ZFA:0001049
slow muscle cell somite 16
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 16.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 16
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 19.
TAO:0001050
slow muscle cells somite 19
zebrafish_anatomy
ZFA:0001050
slow muscle cell somite 19
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 19.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
slow muscle cells somite 19
Branch of the internal carotid artery that extends caudally along the sides of the midbrain and eventually drains into the basilar artery via the posterior communicating artery.
TAO:0001051
CaDI
posterior cerebral carotid artery
posterior rami of the cerebral carotid artery
zebrafish_anatomy
ZFA:0001051
caudal division of the internal carotid artery
Branch of the internal carotid artery that extends caudally along the sides of the midbrain and eventually drains into the basilar artery via the posterior communicating artery.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140605-9
The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins.
TAO:0001052
PHBC
medial head vein
zebrafish_anatomy
ZFA:0001052
primordial hindbrain channel
The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Artery that originates as rostral extensions of the paired lateral dorsal aorta. The primitive internal carotid artery splits to form caudal and cranial divisions. The primitive internal carotid artery is paired.
TAO:0001053
PICA
zebrafish_anatomy
ZFA:0001053
primitive internal carotid artery
Artery that originates as rostral extensions of the paired lateral dorsal aorta. The primitive internal carotid artery splits to form caudal and cranial divisions. The primitive internal carotid artery is paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is called the radix of the aorta.
TAO:0001054
LDA
zebrafish_anatomy
ZFA:0001054
lateral dorsal aorta
Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is called the radix of the aorta.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
The juncture where the pronephric ducts empty into the cloaca.
TAO:0001055
pronephric duct openings
zebrafish_anatomy
urogenital opening
ZFA:0001055
pronephric duct opening
The juncture where the pronephric ducts empty into the cloaca.
GOC:cvs
ORCiD:0000-0002-2244-7917
pronephric duct openings
urogenital opening
ZFIN:ZDB-PUB-060508-11
Muscle that develops from somite and gives rise to body wall muscle masses.
TAO:0001056
myomeres
zebrafish_anatomy
ZFA:0001056
myotome
Muscle that develops from somite and gives rise to body wall muscle masses.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-576
myomeres
ZFIN:ZDB-PUB-961014-576
Veins that connect the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. They form from primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel.
TAO:0001057
ISV
zebrafish_anatomy
ZFA:0001057
intersegmental vein
Veins that connect the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. They form from primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-030908-4
Fin that is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines.
TAO:0001058
tail
tail fin
zebrafish_anatomy
ZFA:0001058
caudal fin
Fin that is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines.
ZFIN:ZDB-PUB-011008-1
Caudal branch of the internal carotid artery that gives rise to the branches that supply the diencephalon and telencephalon.
TAO:0001059
CrDI
anterior cerebral carotid artery
anterior rami of the cerebral carotid artery
rostral division of the internal carotid artery
zebrafish_anatomy
ZFA:0001059
cranial division of the internal carotid artery
Caudal branch of the internal carotid artery that gives rise to the branches that supply the diencephalon and telencephalon.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140605-9
Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus.
TAO:0001060
zebrafish_anatomy
arcualia
ZFA:0001060
basidorsal
Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus.
GOC:mh
ORCiD:0000-0001-9114-8737
Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. They form from the primary sprouts from the dorsal aorta.
TAO:0001061
intersegmental arteries
zebrafish_anatomy
ZFA:0001061
intersegmental artery
Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. They form from the primary sprouts from the dorsal aorta.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-030908-4
intersegmental arteries
Artery that branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary.
TAO:0001062
PMsA
zebrafish_anatomy
ZFA:0001062
primitive mesencephalic artery
Artery that branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0001063
zebrafish_anatomy
ZFA:0001063
posterior caudal vein
A segment of the developing hindbrain.
TAO:0001064
hindbrain segment
rhombomeres
zebrafish_anatomy
neuromere
ZFA:0001064
rhombomere
A segment of the developing hindbrain.
ZFIN:ZDB-PUB-961014-576
rhombomeres
TAO:0001065
zebrafish_anatomy
ZFA:0001065
lateral mesoderm
A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone.
TAO:0001066
dorsal arcocentrum
zebrafish_anatomy
ZFA:0001066
neural arch
A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone.
GOC:mh
ORCiD:0000-0001-9114-8737
Vein that branches from the primordial hindbrain channel (PHBC) at 1.3 dpf. The primitive prosencephalic artery drains into the anterior cerebral vein (ACeV) as do the prosencephalic artery and the nasal vein.
TAO:0001067
ACeV
rostral cerebral vein
zebrafish_anatomy
ZFA:0001067
anterior cerebral vein
Vein that branches from the primordial hindbrain channel (PHBC) at 1.3 dpf. The primitive prosencephalic artery drains into the anterior cerebral vein (ACeV) as do the prosencephalic artery and the nasal vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Artery in the midbrain that develops from the proximal portion of the primitive mesencephalic artery.
TAO:0001068
MsA
zebrafish_anatomy
ZFA:0001068
mesencephalic artery
Artery in the midbrain that develops from the proximal portion of the primitive mesencephalic artery.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Region of the median fin fold that develops into the anal and caudal fin.
TAO:0001069
anal fin fold
tail fin fold
ventral fin
zebrafish_anatomy
ZFA:0001069
ventral fin fold
Region of the median fin fold that develops into the anal and caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Presumptive structure part of the intermediate mesoderm, that is fated to become pronephric mesoderm.
TAO:0001070
nephron primordium
zebrafish_anatomy
ZFA:0001070
presumptive pronephric mesoderm
Presumptive structure part of the intermediate mesoderm, that is fated to become pronephric mesoderm.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue that is the inner layer of the optic cup and will become the neural retina.
TAO:0001071
inner layer optic cup
presumptive retinas
zebrafish_anatomy
ZFA:0001071
presumptive neural retina
Portion of tissue that is the inner layer of the optic cup and will become the neural retina.
GOC:mh
ORCiD:0000-0001-9114-8737
presumptive retinas
Portion of tissue formed form thyroid follicle cells that forms along the midline in pharyngeal mesenchyme. The follicles are not encapsulated by connective tissue.
TAO:0001072
thyroid follicles
zebrafish_anatomy
ZFA:0001072
thyroid follicle
Portion of tissue formed form thyroid follicle cells that forms along the midline in pharyngeal mesenchyme. The follicles are not encapsulated by connective tissue.
ZFIN:ZDB-PUB-060517-11
thyroid follicles
Vasculature that runs along the rostral-caudal axis of the fish.
TAO:0001073
zebrafish_anatomy
ZFA:0001073
axial vasculature
Vasculature that runs along the rostral-caudal axis of the fish.
GOC:cvs
ORCiD:0000-0002-2244-7917
Pear or onion-shaped intraepithelial sensory endorgans. They sit on a small dermal papilla and consist of modified epithelial cells of different types. The taste buds are located in the mouth, in the oropharyngeal cavity, on the head and on the barbels. They are innervated by either the facial (VII), the glossopharyngeal (IX), or the vagal (X) cranial nerve.
TAO:0001074
taste buds
zebrafish_anatomy
ZFA:0001074
Taste buds are made up of vertically oriented, elongate cells form the sensory epithelium of the organ: dark cells with many small microvilli, and light cells with one large microvillus as an apical ending. Between the dark and light cells and the basal lamina, the basal cells stretch horizontally.
taste bud
Pear or onion-shaped intraepithelial sensory endorgans. They sit on a small dermal papilla and consist of modified epithelial cells of different types. The taste buds are located in the mouth, in the oropharyngeal cavity, on the head and on the barbels. They are innervated by either the facial (VII), the glossopharyngeal (IX), or the vagal (X) cranial nerve.
ZFIN:ZDB-PUB-020403-3
taste buds
The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn.
TAO:0001075
choroidal fissures
zebrafish_anatomy
ZFA:0001075
choroidal fissure
The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn.
GOC:cvs
ORCiD:0000-0002-2244-7917
choroidal fissures
The bulbous anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area.
TAO:0001076
pseudogaster
anterior intestine
zebrafish_anatomy
foregut
ZFA:0001076
intestinal bulb
The bulbous anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area.
ZFIN:ZDB-PUB-050120-6
pseudogaster
ISBN:3510650670
A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production.
TAO:0001077
thymic rudiment
zebrafish_anatomy
ZFA:0001077
thymus primordium
A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production.
ZFIN:ZDB-PUB-990414-60
Paired organ where maturation of T-lymphocytes occurs. The adult thymus located on the dorsomedial aspect of the branchial cavity above the third pharyngeal cartilage. The thymus undergoes a period of rapid growth beginning at about the third week and continuing for several more weeks. Accompanying this growth is a dramatic change in the shape of the thymus. It is ovoid initially and then starts to grow dorsally along the skull, forming a characteristic protrusion. During this growth period the adult pattern of rag1-positive cortex and rag1-negative medulla becomes established. The protrusions diminish with age and the thymus gradually shrinks; at two years, the thymus is again confined to the pharynx with minimal if any protrusion.
TAO:0001078
zebrafish_anatomy
ZFA:0001078
thymus
Paired organ where maturation of T-lymphocytes occurs. The adult thymus located on the dorsomedial aspect of the branchial cavity above the third pharyngeal cartilage. The thymus undergoes a period of rapid growth beginning at about the third week and continuing for several more weeks. Accompanying this growth is a dramatic change in the shape of the thymus. It is ovoid initially and then starts to grow dorsally along the skull, forming a characteristic protrusion. During this growth period the adult pattern of rag1-positive cortex and rag1-negative medulla becomes established. The protrusions diminish with age and the thymus gradually shrinks; at two years, the thymus is again confined to the pharynx with minimal if any protrusion.
ZFIN:ZDB-PUB-040216-26
ZFIN:ZDB-PUB-110609-55
Is an interconnected tubular multi-tissue structure that contains blood that is actively transported around the organism.
TAO:0001079
zebrafish_anatomy
blood vessel
ZFA:0001079
blood vasculature
Is an interconnected tubular multi-tissue structure that contains blood that is actively transported around the organism.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of somite that gives rise to skeletal elements.
TAO:0001080
sclerotomes
zebrafish_anatomy
ZFA:0001080
sclerotome
Portion of somite that gives rise to skeletal elements.
GOC:mh
ORCiD:0000-0001-9114-8737
sclerotomes
Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle.
TAO:0001081
thyroid primordia
zebrafish_anatomy
ZFA:0001081
thyroid primordium
Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
thyroid primordia
Portion of tissue that is posterior to the developing notochord during tail bud extension.
TAO:0001082
zebrafish_anatomy
ZFA:0001082
chordo neural hinge
Portion of tissue that is posterior to the developing notochord during tail bud extension.
ZFIN:ZDB-PUB-970723-15
Proliferative region that is part of the ventricular system. The cells directly face the ventricle.
TAO:0001083
ventricular zones
zebrafish_anatomy
ZFA:0001083
ventricular zone
Proliferative region that is part of the ventricular system. The cells directly face the ventricle.
GOC:mh
ORCiD:0000-0001-9114-8737
ventricular zones
TAO:0001084
epaxial myotome regions
zebrafish_anatomy
ZFA:0001084
epaxial myotome region
epaxial myotome regions
TAO:0001085
hypaxial muscle
zebrafish_anatomy
ZFA:0001085
hypaxial myotome region
Cells that develop from adaxial cells that express engrailed and do not migrate completely to the lateral surface of the myotome, and instead extend from the notochord to the lateral surface of the somite, at the level of the future horizontal myoseptum.
TAO:0001086
muscle pioneers
non migratory adaxial cells
zebrafish_anatomy
ZFA:0001086
muscle pioneer
Cells that develop from adaxial cells that express engrailed and do not migrate completely to the lateral surface of the myotome, and instead extend from the notochord to the lateral surface of the somite, at the level of the future horizontal myoseptum.
ZFIN:ZDB-PUB-961219-12
muscle pioneers
true
true
TAO:0001089
myocommata
myosepta
zebrafish_anatomy
ZFA:0001089
myoseptum
myocommata
ZFIN:ZDB-PUB-151106-17
myosepta
true
true
true
Annotation with this anatomy term indicates that a structure was not specified by the author.
TAO:0001093
zebrafish_anatomy
ZFA:0001093
unspecified
Annotation with this anatomy term indicates that a structure was not specified by the author.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical structure that is an individual member of Danio rerio.
CARO:0000012
TAO:0001094
multi-cellular organism
zebrafish_anatomy
ZFA:0001094
whole organism
Anatomical structure that is an individual member of Danio rerio.
GOC:mh
ORCiD:0000-0001-9114-8737
Is an otic sensory epithelium that will develop into the mature macula.
TAO:0001095
immature maculae
immature sensory patch
immature sensory patches
zebrafish_anatomy
ZFA:0001095
immature macula
Is an otic sensory epithelium that will develop into the mature macula.
GOC:ymb
ORCiD:0000-0002-9900-7880
immature maculae
immature sensory patches
Is an otic sensory epithelium that will develop into the mature anterior macula.
TAO:0001096
immature anterior maculae
zebrafish_anatomy
ZFA:0001096
immature anterior macula
Is an otic sensory epithelium that will develop into the mature anterior macula.
GOC:ymb
ORCiD:0000-0002-9900-7880
immature anterior maculae
Is an otic sensory epithelium that will develop into the mature posterior macula.
TAO:0001097
immature posterior maculae
zebrafish_anatomy
ZFA:0001097
immature posterior macula
Is an otic sensory epithelium that will develop into the mature posterior macula.
GOC:ymb
ORCiD:0000-0002-9900-7880
immature posterior maculae
A hair cell which is immature and located in the anterior macula. It will develop into a hair cell of the anterior macula.
TAO:0001098
immature sensory hair cells anterior macula
zebrafish_anatomy
ZFA:0001098
immature hair cell anterior macula
A hair cell which is immature and located in the anterior macula. It will develop into a hair cell of the anterior macula.
GOC:ymb
ORCiD:0000-0002-9900-7880
immature sensory hair cells anterior macula
A hair cell which is immature and located in the posterior macula. It will develop into a hair cell of the posterior macula.
TAO:0001099
immature sensory hair cells posterior macula
zebrafish_anatomy
ZFA:0001099
immature hair cell posterior macula
A hair cell which is immature and located in the posterior macula. It will develop into a hair cell of the posterior macula.
GOC:ymb
ORCiD:0000-0002-9900-7880
immature sensory hair cells posterior macula
A duct that carries bile from the liver to the intestine.
TAO:0001100
zebrafish_anatomy
ZFA:0001100
hepatic duct
A duct that carries bile from the liver to the intestine.
GOC:cvs
ORCiD:0000-0002-2244-7917
Sensory system that uses taste buds to sense chemical compounds.
TAO:0001101
zebrafish_anatomy
ZFA:0001101
gustatory system
Sensory system that uses taste buds to sense chemical compounds.
ZFIN:ZDB-PUB-961014-1280
true
true
TAO:0001104
zebrafish_anatomy
ZFA:0001104
pharyngeal endoderm
Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.
TAO:0001105
embryonic structures
zebrafish_anatomy
ZFA:0001105
embryonic structure
Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.
GOC:mh
ORCiD:0000-0001-9114-8737
embryonic structures
Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits.
TAO:0001106
pharyngeal pouches
zebrafish_anatomy
ZFA:0001106
pharyngeal pouch
Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits.
ZFIN:ZDB-PUB-041029-8
pharyngeal pouches
Portion of tissue that develops into a gill.
TAO:0001107
internal gill buds
zebrafish_anatomy
ZFA:0001107
internal gill bud
Portion of tissue that develops into a gill.
ZFIN:ZDB-PUB-041216-7
internal gill buds
Telencephalic white matter (commissure) which connects the two cerebral hemispheres across the midline.
TAO:0001108
commissura anterior
commissura rostral
rostral commissure
zebrafish_anatomy
ZFA:0001108
anterior commissure
Telencephalic white matter (commissure) which connects the two cerebral hemispheres across the midline.
GOC:mh
ORCiD:0000-0001-9114-8737
A female germ cell that has entered meiosis.
ZFA:0009008
CL:0000023
TAO:0001109
zebrafish_anatomy
egg
ZFA:0001109
I think the term we really want is CL:0000023.
oocyte
A female germ cell that has entered meiosis.
GOC:tfm
ISBN:0721662544
Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg.
TAO:0001110
egg follicle
zebrafish_anatomy
ZFA:0001110
ovarian follicle
Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg.
ZFIN:ZDB-PUB-961014-1020
Acellular anatomic structure that is a layer that separates the developing oocyte and the granulosa cell layer.
TAO:0001111
vitelline envelope
zebrafish_anatomy
ZFA:0001111
zona radiata
Acellular anatomic structure that is a layer that separates the developing oocyte and the granulosa cell layer.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue part of the ovarian follicle containing a single layer of granulosa cells that surround the developing oocyte.
TAO:0001112
granulosa cell layers
zebrafish_anatomy
ZFA:0001112
granulosa cell layer
Portion of tissue part of the ovarian follicle containing a single layer of granulosa cells that surround the developing oocyte.
GOC:mh
ORCiD:0000-0001-9114-8737
granulosa cell layers
Multi-tissue structure of the ovarian follicle, composed of stromal cells and capillaries that covers oocytes. The thecal layer is external to the granulosa cell layer.
TAO:0001113
thecal cell layers
zebrafish_anatomy
ZFA:0001113
thecal cell layer
Multi-tissue structure of the ovarian follicle, composed of stromal cells and capillaries that covers oocytes. The thecal layer is external to the granulosa cell layer.
GOC:mh
ORCiD:0000-0001-9114-8737
thecal cell layers
Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions.
TAO:0001114
zebrafish_anatomy
ZFA:0001114
head
Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions.
GOC:mh
ORCiD:0000-0001-9114-8737
Organism subdivision which is the part of the body posterior to the head and anterior to the post-vent region.
TAO:0001115
zebrafish_anatomy
ZFA:0001115
trunk
Organism subdivision which is the part of the body posterior to the head and anterior to the post-vent region.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of embryonic tissue determined by fate mapping to become a structure.
TAO:0001116
presumptive structures
zebrafish_anatomy
ZFA:0001116
presumptive structure
Portion of embryonic tissue determined by fate mapping to become a structure.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
presumptive structures
Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins.
TAO:0001117
zebrafish_anatomy
tail
ZFA:0001117
post-vent region
Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins.
GOC:mh
ORCiD:0000-0001-9114-8737
A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed.
TAO:0001118
UGP
anal papilla
anal papillae
genital papilla
urogenital papillae
zebrafish_anatomy
ZFA:0001118
urogenital papilla
A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed.
ZFIN:ZDB-PUB-040526-4
urogenital papillae
A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales.
TAO:0001119
zebrafish_anatomy
ZFA:0001119
dermis
A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales.
ZFIN:ZDB-PUB-040726-12
TAO:0001120
neural ectoderm
neurectoderm
zebrafish_anatomy
ZFA:0001120
neuroectoderm
Presumptive structure fated to become the shield. Defined by fate mapping.
TAO:0001121
zebrafish_anatomy
ZFA:0001121
presumptive shield
Presumptive structure fated to become the shield. Defined by fate mapping.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue that consists of a layer of cells that form during embryogenesis that will give rise to all structures of the organism.
TAO:0001122
embryonic germ layers
zebrafish_anatomy
ZFA:0001122
primary germ layer
Portion of tissue that consists of a layer of cells that form during embryogenesis that will give rise to all structures of the organism.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism.
TAO:0001123
median fin skeleton
unpaired fin skeleton
zebrafish_anatomy
ZFA:0001123
axial fin skeleton
Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism.
TAO:curator
Median fin skeleton located on the dorsal surface of the organism.
TAO:0001124
zebrafish_anatomy
ZFA:0001124
dorsal fin skeleton
Median fin skeleton located on the dorsal surface of the organism.
TAO:curator
The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield.
TAO:0001125
Nieuwkoop center
zebrafish_anatomy
ZFA:0001125
organizer inducing center
The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield.
ZFIN:ZDB-PUB-991102-7
The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution.
TAO:0001126
NEM
noninvoluting endocytic marginal cells
zebrafish_anatomy
ZFA:0001126
noninvoluting endocytic marginal cell cluster
The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution.
ZFIN:ZDB-PUB-970107-2
noninvoluting endocytic marginal cells
Sensory system responsible for the perception of light.
TAO:0001127
zebrafish_anatomy
ZFA:0001127
visual system
Sensory system responsible for the perception of light.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0001128
pharyngeal pouches 1
zebrafish_anatomy
ZFA:0001128
pharyngeal pouch 1
pharyngeal pouches 1
TAO:0001129
zebrafish_anatomy
ZFA:0001129
pharyngeal pouches 2-6
TAO:0001130
pharyngeal pouches 2
zebrafish_anatomy
ZFA:0001130
pharyngeal pouch 2
pharyngeal pouches 2
TAO:0001131
pharyngeal pouches 3
zebrafish_anatomy
ZFA:0001131
pharyngeal pouch 3
pharyngeal pouches 3
TAO:0001132
pharyngeal pouches 6
zebrafish_anatomy
ZFA:0001132
pharyngeal pouch 6
pharyngeal pouches 6
TAO:0001133
pharyngeal pouches 5
zebrafish_anatomy
ZFA:0001133
pharyngeal pouch 5
pharyngeal pouches 5
TAO:0001134
pharyngeal pouches 4
zebrafish_anatomy
ZFA:0001134
pharyngeal pouch 4
pharyngeal pouches 4
Portion of tissue that is the cavity-containing primordium of the central nervous system, developing from the neural rod in the late segmentation period.
TAO:0001135
zebrafish_anatomy
presumptive central nervous system
ZFA:0001135
neural tube
Portion of tissue that is the cavity-containing primordium of the central nervous system, developing from the neural rod in the late segmentation period.
ZFIN:ZDB-PUB-961014-576
A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells.
TAO:0001136
subcutis
zebrafish_anatomy
ZFA:0001136
hypodermis
A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells.
ZFIN:ZDB-PUB-040726-12
Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone.
TAO:0001137
ventral tooth rows
zebrafish_anatomy
ZFA:0001137
ventral tooth row
Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone.
GOC:mh
ORCiD:0000-0001-9114-8737
ventral tooth rows
Sensory system responsible for the perception of spatial orientation and auditory stimuli.
TAO:0001138
zebrafish_anatomy
ZFA:0001138
vestibuloauditory system
Sensory system responsible for the perception of spatial orientation and auditory stimuli.
GOC:ymb
ORCiD:0000-0002-9900-7880
Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row.
TAO:0001139
mediodorsal tooth rows
zebrafish_anatomy
ZFA:0001139
mediodorsal tooth row
Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
mediodorsal tooth rows
Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone.
TAO:0001140
dorsal tooth rows
zebrafish_anatomy
ZFA:0001140
dorsal tooth row
Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone.
GOC:mh
ORCiD:0000-0001-9114-8737
dorsal tooth rows
Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row.
TAO:0001141
zebrafish_anatomy
ZFA:0001141
tooth 1V
Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row.
TAO:0001142
zebrafish_anatomy
ZFA:0001142
tooth 5V
Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row.
TAO:0001143
zebrafish_anatomy
ZFA:0001143
tooth 4V
Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row.
TAO:0001144
zebrafish_anatomy
ZFA:0001144
tooth 2V
Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row.
TAO:0001145
zebrafish_anatomy
ZFA:0001145
tooth 3V
Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row.
TAO:0001146
zebrafish_anatomy
ZFA:0001146
tooth 1MD
Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row.
TAO:0001147
zebrafish_anatomy
ZFA:0001147
tooth 2MD
Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row.
TAO:0001148
zebrafish_anatomy
ZFA:0001148
tooth 1D
Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Sensory system responsible for olfaction. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors.
TAO:0001149
zebrafish_anatomy
ZFA:0001149
olfactory system
Sensory system responsible for olfaction. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row.
TAO:0001150
zebrafish_anatomy
ZFA:0001150
tooth 2D
Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row.
TAO:0001151
zebrafish_anatomy
ZFA:0001151
tooth 4MD
Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row.
TAO:0001152
zebrafish_anatomy
ZFA:0001152
tooth 3MD
Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row.
GOC:mh
ORCiD:0000-0001-9114-8737
Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium.
TAO:0001153
dental primordium
tooth germ
zebrafish_anatomy
ZFA:0001153
tooth placode
Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium.
GOC:cvs
ORCiD:0000-0002-2244-7917
Musculature part of the anal fin.
TAO:0001154
zebrafish_anatomy
ZFA:0001154
anal fin musculature
Musculature part of the anal fin.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Nervous system that is involved primarily with the internal regulation of the gustatory processes. In most vertebrates the enteric neurons form two layers of ganglionic plexuses located along the entire length of the gastrointestinal tract.
TAO:0001155
zebrafish_anatomy
ZFA:0001155
enteric nervous system
Nervous system that is involved primarily with the internal regulation of the gustatory processes. In most vertebrates the enteric neurons form two layers of ganglionic plexuses located along the entire length of the gastrointestinal tract.
GOC:cvs
GOC:ymb
ISBN:0080923437
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
http://www.macses.ucsf.edu/research/allostatic/parasym.php
Dorsolateral placode that gives rise to the posterior lateral line.
TAO:0001156
posterior lateral line placodes
zebrafish_anatomy
ZFA:0001156
posterior lateral line placode
Dorsolateral placode that gives rise to the posterior lateral line.
GOC:ymb
ORCiD:0000-0002-9900-7880
posterior lateral line placodes
A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail.
TAO:0001157
posterior lateral line primordia
zebrafish_anatomy
ZFA:0001157
posterior lateral line primordium
A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail.
ZFIN:ZDB-PUB-010705-16
posterior lateral line primordia
Anatomical system that produces, transports and secretes peptides.
TAO:0001158
zebrafish_anatomy
ZFA:0001158
endocrine system
Anatomical system that produces, transports and secretes peptides.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
System that provides protection against foreign and abnormal cells and removes cellular debris.
TAO:0001159
zebrafish_anatomy
ZFA:0001159
immune system
System that provides protection against foreign and abnormal cells and removes cellular debris.
ISBN:0314472304
ZFS:0000044
zebrafish_anatomy
ZFA:0001160
adult
true
Paired fin that is located in the thoracic region of the body.
TAO:0001161
forefin
pectoral fins
zebrafish_anatomy
ZFA:0001161
pectoral fin
Paired fin that is located in the thoracic region of the body.
TAO:curator
pectoral fins
Median fin that is located posterior to the anus.
TAO:0001162
zebrafish_anatomy
ZFA:0001162
anal fin
Median fin that is located posterior to the anus.
TAO:curator
Supraneural located between vertebra 6 and 7.
TAO:0001163
zebrafish_anatomy
ZFA:0001163
supraneural 7
Supraneural located between vertebra 6 and 7.
ZFIN:ZDB-PUB-031103-13
Supraneural located between vertebra 5 and 6.
TAO:0001164
sn6
zebrafish_anatomy
ZFA:0001164
supraneural 6
Supraneural located between vertebra 5 and 6.
ZFIN:ZDB-PUB-031103-13
Supraneural located between vertebra 4 and 5.
TAO:0001165
sn5
zebrafish_anatomy
ZFA:0001165
supraneural 5
Supraneural located between vertebra 4 and 5.
ZDB:ZDB-PUB-031103-13
Supraneural located between vertebra 8 and 9.
TAO:0001166
zebrafish_anatomy
ZFA:0001166
supraneural 9
Supraneural located between vertebra 8 and 9.
ZFIN:ZDB-PUB-031103-13
Vertebra that is posteriorly adjacent to the neurocranium.
TAO:0001167
cervical vertebra 1
zebrafish_anatomy
ZFA:0001167
vertebra 1
Vertebra that is posteriorly adjacent to the neurocranium.
TAO:curator
Vertebra that is posteriorly adjacent to vertebra 1.
TAO:0001168
cervical vertebra 2
zebrafish_anatomy
ZFA:0001168
vertebra 2
Vertebra that is posteriorly adjacent to vertebra 1.
TAO:curator
Vertebra that is posteriorly adjacent to vertebra 2.
TAO:0001169
zebrafish_anatomy
ZFA:0001169
vertebra 3
Vertebra that is posteriorly adjacent to vertebra 2.
TAO:curator
Vertebra that is posteriorly adjacent to vertebra 3.
TAO:0001170
zebrafish_anatomy
ZFA:0001170
vertebra 4
Vertebra that is posteriorly adjacent to vertebra 3.
TAO:curator
Thin, rod-shaped, anteroventrally directed membrane bone that develops as a separate outgrowth from the cartilage parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. It articulates with the tripus at the tripus-swim bladder connection. Often termed a fifth Weberian ossicle.
TAO:0001171
zebrafish_anatomy
ZFA:0001171
The os suspensorium is similar in shape to a rib, but the other ribs in Danio develop as separate ossifications that grow toward and articulate with the parapophyses.
os suspensorium
Thin, rod-shaped, anteroventrally directed membrane bone that develops as a separate outgrowth from the cartilage parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. It articulates with the tripus at the tripus-swim bladder connection. Often termed a fifth Weberian ossicle.
ZFIN:ZDB-PUB-031103-13
Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Located dorsal to the neural tube.
TAO:0001172
zebrafish_anatomy
ZFA:0001172
roofing cartilage
Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Located dorsal to the neural tube.
ZFIN:ZDB-PUB-031103-13
Median fin that is located on the dorsal surface of the fish.
TAO:0001173
zebrafish_anatomy
ZFA:0001173
dorsal fin
Median fin that is located on the dorsal surface of the fish.
GOC:cvs
ORCiD:0000-0002-2244-7917
Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side.
TAO:0001174
zebrafish_anatomy
ZFA:0001174
pharyngeal epithelium
Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side.
ZFIN:ZDB-PUB-070426-1
Embryonic structure that is the dome of cytoplasm that segregates from the yolk toward the animal pole during and after the one cell-stage, and which undergoes cleavage.
TAO:0001175
zebrafish_anatomy
ZFA:0001175
blastodisc
Embryonic structure that is the dome of cytoplasm that segregates from the yolk toward the animal pole during and after the one cell-stage, and which undergoes cleavage.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Embryonic structure that is composed of the cellular part of the embryo, excluding the yolk cell, derived from the blastodisc by early morphogenesis; refers particularly to the time when the cell array is sheet-like, between 30%-epiboly and the end of gastrulation.
TAO:0001176
zebrafish_anatomy
ZFA:0001176
blastoderm
Embryonic structure that is composed of the cellular part of the embryo, excluding the yolk cell, derived from the blastodisc by early morphogenesis; refers particularly to the time when the cell array is sheet-like, between 30%-epiboly and the end of gastrulation.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
TAO:0001177
zebrafish_anatomy
ZFA:0001177
roof plate spinal cord region
TAO:0001178
ventral ectoderm
zebrafish_anatomy
ZFA:0001178
non neural ectoderm
The outer layer of the epidermis. The living cells form single cell layer, the outer surface of which is ornamented with microridges. These outer epidermal cells are not renewed periodically, but are individually replaced when dead.
TAO:0001179
zebrafish_anatomy
ZFA:0001179
epidermal superficial stratum
The outer layer of the epidermis. The living cells form single cell layer, the outer surface of which is ornamented with microridges. These outer epidermal cells are not renewed periodically, but are individually replaced when dead.
ZFIN:ZDB-PUB-040726-12
Lower layer of the epidermis. Composed of a single layer of cells. The major function of the basal stratum is to keep the epidermis attached to the underlying dermis by means of (hemidesmosomes attached to the basement membrane.
TAO:0001180
basal epidermal layer
zebrafish_anatomy
ZFA:0001180
epidermal basal stratum
Lower layer of the epidermis. Composed of a single layer of cells. The major function of the basal stratum is to keep the epidermis attached to the underlying dermis by means of (hemidesmosomes attached to the basement membrane.
ZFIN:ZDB-PUB-040726-12
The tissue which lies between the basal stratum and the superficial stratum. This layer is composed of a variable number of cell layers which contain mucous goblet cells, club cells and sensory cells. Most of the cells of this region are undifferentiated. They serve as a reservoir to replace dead cells in any of the epidermis regions.
TAO:0001181
zebrafish_anatomy
ZFA:0001181
epidermal intermediate stratum
The tissue which lies between the basal stratum and the superficial stratum. This layer is composed of a variable number of cell layers which contain mucous goblet cells, club cells and sensory cells. Most of the cells of this region are undifferentiated. They serve as a reservoir to replace dead cells in any of the epidermis regions.
ZFIN:ZDB-PUB-040726-12
Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network.
TAO:0001182
stratum compactum
zebrafish_anatomy
ZFA:0001182
dermal deep region
Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network.
ZFIN:ZDB-PUB-040726-12
Outer portion of the dermis composed of a loose collagenous matrix housing numerous fibroblasts, nerves, some pigment cells, and scales. Scale development takes place in this layer of the dermis.
TAO:0001183
stratum laxum
zebrafish_anatomy
ZFA:0001183
dermal superficial region
Outer portion of the dermis composed of a loose collagenous matrix housing numerous fibroblasts, nerves, some pigment cells, and scales. Scale development takes place in this layer of the dermis.
ZFIN:ZDB-PUB-040726-12
Paired fin located in the abdominal position of the body.
TAO:0001184
pelvic fins
zebrafish_anatomy
ZFA:0001184
pelvic fin
Paired fin located in the abdominal position of the body.
TAO:curator
pelvic fins
The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL.
TAO:0001185
zebrafish_anatomy
EVL
ZFA:0001185
periderm
The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL.
ZFIN:ZDB-PUB-040726-12
Acellular anatomical structure that is a layer of collagen fibrils in the immature integument in a subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region.
TAO:0001186
primary dermal stroma
zebrafish_anatomy
ZFA:0001186
collagenous dermal stroma
Acellular anatomical structure that is a layer of collagen fibrils in the immature integument in a subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040726-12
Embryonic structure that gives rise to the midbrain hindbrain boundary.
TAO:0001187
presumptive midbrain-hindbrain boundary
zebrafish_anatomy
ZFA:0001187
presumptive midbrain hindbrain boundary
Embryonic structure that gives rise to the midbrain hindbrain boundary.
GOC:mh
ORCiD:0000-0001-9114-8737
The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swim bladder to the inner ear (Alexander, 1962).
TAO:0001188
zebrafish_anatomy
ZFA:0001188
Weberian apparatus
The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swim bladder to the inner ear (Alexander, 1962).
GOC:mh
ORCiD:0000-0001-9114-8737
All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988). Adult zebrafish usually 32 vertebrae but may have as few as 30 to as many as 33 vertebrae.
TAO:0001189
vertebrae
zebrafish_anatomy
ZFA:0001189
vertebra
All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988). Adult zebrafish usually 32 vertebrae but may have as few as 30 to as many as 33 vertebrae.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-020807-1
vertebrae
The first four vertebrae, which are part of the Weberian apparatus.
TAO:0001190
Weberian vertebrae
zebrafish_anatomy
ZFA:0001190
Weberian vertebra
The first four vertebrae, which are part of the Weberian apparatus.
GOC:mh
ORCiD:0000-0001-9114-8737
Weberian vertebrae
Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal.
TAO:0001191
small supraneural
sn2
zebrafish_anatomy
ZFA:0001191
supraneural 2
Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal.
GOC:mh
ORCiD:0000-0001-9114-8737
Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface.
TAO:0001192
large supraneural
sn3
zebrafish_anatomy
ZFA:0001192
supraneural 3
Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface.
GOC:mh
ORCiD:0000-0001-9114-8737
Supraneural located between vertebra 7 and 8.
TAO:0001193
zebrafish_anatomy
ZFA:0001193
supraneural 8
Supraneural located between vertebra 7 and 8.
ZFIN:ZDB-PUB-031103-13
Neural crest that is part of the head.
TAO:0001194
zebrafish_anatomy
ZFA:0001194
cranial neural crest
Neural crest that is part of the head.
GOC:ymb
ORCiD:0000-0002-9900-7880
The anterior portion of the adenohypophysis. Comprised of the proximal and rostral pars anterior.
TAO:0001195
pars distalis
zebrafish_anatomy
ZFA:0001195
pars anterior
The anterior portion of the adenohypophysis. Comprised of the proximal and rostral pars anterior.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0001196
zebrafish_anatomy
ZFA:0001196
This structure does not exist in Zebrafish. Consider proximal pars anterior ZFA:0005581.
pars tuberalis
true
Caudal portion of the adenohypophysis.
TAO:0001197
zebrafish_anatomy
ZFA:0001197
pars intermedia
Caudal portion of the adenohypophysis.
ZFIN:ZDB-PUB-080616-4
Portion of tissue that gives rise to the adenohypophysis.
TAO:0001198
pituitary placode
zebrafish_anatomy
ZFA:0001198
adenohypophyseal placode
Portion of tissue that gives rise to the adenohypophysis.
GOC:cvs
ORCiD:0000-0002-2244-7917
Brain structure which is a short stalk connecting the neurohypophysis with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis.
TAO:0001199
hypophysial stalk
infundibulum of hypothalamus
pituitary stalk
zebrafish_anatomy
ZFA:0001199
infundibulum
Brain structure which is a short stalk connecting the neurohypophysis with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis.
GOC:cvs
ORCiD:0000-0002-2244-7917
Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism.
TAO:0001200
zebrafish_anatomy
ZFA:0001200
corpuscles of Stannius
Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0001201
zebrafish_anatomy
ZFA:0001201
ventral lateral mesoderm
Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye.
TAO:0001202
eye cup
zebrafish_anatomy
ZFA:0001202
optic cup
Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure that attach the zonules, that suspend the lens, to the eye. The ciliary zone secretes aqueous humor. Unlike mammals zebrafish the ciliary zone dose not contain processes or a circumferential band of muscle.
TAO:0001203
ciliary epithelial zone
zebrafish_anatomy
ciliary bodies
ciliary body
ZFA:0001203
May need to obsolete this term, ZDB-PUB-050701-15.
The ciliary "body" does not contain processes or a cumferential band of muscle. For this reason, we refer to the region adjacent and posterior to the iris as the ciliary zone, and not the ciliary body. The ciliary zone, however, is expanded and has a morphology consistent with contraction in a small area of the ventral-most region.
ciliary zone
Multi-tissue structure that attach the zonules, that suspend the lens, to the eye. The ciliary zone secretes aqueous humor. Unlike mammals zebrafish the ciliary zone dose not contain processes or a circumferential band of muscle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
ciliary bodies
Region of the mesoderm that is located along the rostral-caudal axis of the embryo.
TAO:0001204
zebrafish_anatomy
ZFA:0001204
axial mesoderm
Region of the mesoderm that is located along the rostral-caudal axis of the embryo.
GOC:cvs
ORCiD:0000-0002-2244-7917
Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jaw, or ventral mandibular arch. It is typically resorbed in adults.
TAO:0001205
ventral mandibular cartilage
zebrafish_anatomy
ZFA:0001205
Meckel's cartilage
Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jaw, or ventral mandibular arch. It is typically resorbed in adults.
GOC:ymb
ORCiD:0000-0002-9900-7880
TAO:0001206
IM
zebrafish_anatomy
ZFA:0001206
intermediate mesoderm
Embryonic structure, part of the neural keel, that gives rise to rhombomere 1.
TAO:0001207
zebrafish_anatomy
ZFA:0001207
presumptive rhombomere 1
Embryonic structure, part of the neural keel, that gives rise to rhombomere 1.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, part of the neural keel, that gives rise to rhombomere 2.
TAO:0001208
zebrafish_anatomy
ZFA:0001208
presumptive rhombomere 2
Embryonic structure, part of the neural keel, that gives rise to rhombomere 2.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, part of the neural keel, that gives rise to rhombomere 7.
TAO:0001209
zebrafish_anatomy
ZFA:0001209
presumptive rhombomere 7
Embryonic structure, part of the neural keel, that gives rise to rhombomere 7.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, part of the neural keel, that gives rise to rhombomere 6.
TAO:0001210
zebrafish_anatomy
ZFA:0001210
presumptive rhombomere 6
Embryonic structure, part of the neural keel, that gives rise to rhombomere 6.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, part of the neural keel, that gives rise to rhombomere 5.
TAO:0001211
zebrafish_anatomy
ZFA:0001211
presumptive rhombomere 5
Embryonic structure, part of the neural keel, that gives rise to rhombomere 5.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, part of the neural keel, that gives rise to rhombomere 4.
TAO:0001212
zebrafish_anatomy
ZFA:0001212
presumptive rhombomere 4
Embryonic structure, part of the neural keel, that gives rise to rhombomere 4.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, part of the neural keel, that gives rise to rhombomere 3.
TAO:0001213
zebrafish_anatomy
ZFA:0001213
presumptive rhombomere 3
Embryonic structure, part of the neural keel, that gives rise to rhombomere 3.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, part of the neural keel, that gives rise to rhombomere 8.
TAO:0001214
zebrafish_anatomy
ZFA:0001214
presumptive rhombomere 8
Embryonic structure, part of the neural keel, that gives rise to rhombomere 8.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure that is paired, and is situated one on either side of and forming part of the lateral wall of the third ventricle.
TAO:0001215
thalami
zebrafish_anatomy
ZFA:0001215
thalamus
Multi-tissue structure that is paired, and is situated one on either side of and forming part of the lateral wall of the third ventricle.
GOC:mh
ORCiD:0000-0001-9114-8737
thalami
Anatomical cluster that is the regional skeletal system of the jaws, hyoid and branchial arches.
TAO:0001216
pharyngeal arch skeleton
pharyngeal skeleton
zebrafish_anatomy
ZFA:0001216
splanchnocranium
Anatomical cluster that is the regional skeletal system of the jaws, hyoid and branchial arches.
GOC:mh
ORCiD:0000-0001-9114-8737
Tissue along the lateral edges of the shield that is fated to develop into the hypochord.
TAO:0001217
zebrafish_anatomy
ZFA:0001217
presumptive hypochord
Tissue along the lateral edges of the shield that is fated to develop into the hypochord.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure, the part of the neural plate fated to become floor plate.
TAO:0001218
zebrafish_anatomy
ZFA:0001218
presumptive floor plate
Embryonic structure, the part of the neural plate fated to become floor plate.
GOC:mh
ORCiD:0000-0001-9114-8737
true
Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials.
TAO:0001220
copulae
zebrafish_anatomy
ZFA:0001220
copula
Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
copulae
Copula that is ventral, median, and associated with pharyngeal arches 3-5. A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials.
TAO:0001221
anterior copula
zebrafish_anatomy
ZFA:0001221
copula 1
Copula that is ventral, median, and associated with pharyngeal arches 3-5. A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
Copula that is ventral, median, and associated with pharyngeal arches 6-7. A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials.
TAO:0001222
posterior copula
zebrafish_anatomy
ZFA:0001222
copula 2
Copula that is ventral, median, and associated with pharyngeal arches 6-7. A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm).
TAO:0001223
zebrafish_anatomy
ZFA:0001223
basibranchial 1
Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm).
GOC:mh
ORCiD:0000-0001-9114-8737
Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm). It is the first of the three basibranchials to ossify.
TAO:0001224
zebrafish_anatomy
ZFA:0001224
basibranchial 2
Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm). It is the first of the three basibranchials to ossify.
GOC:mh
ORCiD:0000-0001-9114-8737
Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials, anterior to the third hypobranchials (7.6 mm) and associated with pharyngeal arch 5. Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult.
TAO:0001225
zebrafish_anatomy
ZFA:0001225
basibranchial 3
Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials, anterior to the third hypobranchials (7.6 mm) and associated with pharyngeal arch 5. Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult.
GOC:mh
ORCiD:0000-0001-9114-8737
Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials.
TAO:0001226
zebrafish_anatomy
ZFA:0001226
basibranchial 4
Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
Skeletal and cartilaginous elements of the first pharyngeal arch.
TAO:0001227
jaw
jaw cartilage
jaws
oral jaw skeleton
pharyngeal arch 1 skeleton
zebrafish_anatomy
ZFA:0001227
mandibular arch skeleton
Skeletal and cartilaginous elements of the first pharyngeal arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
jaws
Anatomical cluster made up of skeletal and cartilaginous elements of the third pharyngeal arch, also called first gill or branchial arch.
TAO:0001228
branchial arch 1 skeleton
gill arch 1 skeleton
visceral arch 3 skeleton
zebrafish_anatomy
ZFA:0001228
pharyngeal arch 3 skeleton
Anatomical cluster made up of skeletal and cartilaginous elements of the third pharyngeal arch, also called first gill or branchial arch.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical cluster made up of skeletal and cartilaginous elements of the seventh pharyngeal arch, also called fifth gill or branchial arch.
TAO:0001229
branchial arch 5 skeleton
gill arch 5 skeleton
visceral arch 7 skeleton
zebrafish_anatomy
ZFA:0001229
pharyngeal arch 7 skeleton
Anatomical cluster made up of skeletal and cartilaginous elements of the seventh pharyngeal arch, also called fifth gill or branchial arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
Anatomical cluster made up of skeletal and cartilaginous elements of the sixth pharyngeal arch, also called fourth gill or branchial arch.
TAO:0001230
branchial arch 4 skeleton
gill arch 4 skeleton
visceral arch 6 skeleton
zebrafish_anatomy
ZFA:0001230
pharyngeal arch 6 skeleton
Anatomical cluster made up of skeletal and cartilaginous elements of the sixth pharyngeal arch, also called fourth gill or branchial arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
Anatomical cluster made up of skeletal and cartilaginous elements of the fourth pharyngeal arch, also called second gill or branchial arch.
TAO:0001231
branchial arch 2 skeleton
gill arch 2 skeleton
visceral arch 4 skeleton
zebrafish_anatomy
ZFA:0001231
pharyngeal arch 4 skeleton
Anatomical cluster made up of skeletal and cartilaginous elements of the fourth pharyngeal arch, also called second gill or branchial arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
Anatomical cluster made up of skeletal and cartilaginous elements of the fifth pharyngeal arch, also called third gill or branchial arch.
TAO:0001232
branchial arch 3 skeleton
gill arch 3 skeleton
visceral arch 5 skeleton
zebrafish_anatomy
ZFA:0001232
pharyngeal arch 5 skeleton
Anatomical cluster made up of skeletal and cartilaginous elements of the fifth pharyngeal arch, also called third gill or branchial arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
Ossification that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 15mm.
TAO:0001233
hypobranchial 1 bones
zebrafish_anatomy
ZFA:0001233
hypobranchial 1 bone
Ossification that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 15mm.
GOC:cvs
GOC:mh
ORCID:0000-0002-2244-7917
ORCiD:0000-0001-9114-8737
hypobranchial 1 bones
Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial.
TAO:0001234
hypobranchial 4 bones
zebrafish_anatomy
ZFA:0001234
This may need to be obsoleted since it looks like the cartilage is either reabsorbed or fused with another skeletal element.
hypobranchial 4 bone
Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial.
GOC:mh
ORCiD:0000-0001-9114-8737
hypobranchial 4 bones
Ossifications that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Ossification may begin when the fish is 8mm.
TAO:0001235
hypobranchial 3 bones
zebrafish_anatomy
ZFA:0001235
hypobranchial 3 bone
Ossifications that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Ossification may begin when the fish is 8mm.
GOC:cvs
GOC:mh
ORCID:0000-0002-2244-7917
ORCiD:0000-0001-9114-8737
hypobranchial 3 bones
Ossification that develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 12 mm.
TAO:0001236
hypobranchial 2 bones
zebrafish_anatomy
ZFA:0001236
hypobranchial 2 bone
Ossification that develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 12 mm.
GOC:cvs
GOC:mh
ORCID:0000-0002-2244-7917
ORCiD:0000-0001-9114-8737
hypobranchial 2 bones
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins.
TAO:0001237
zebrafish_anatomy
ZFA:0001237
ceratobranchial 1 bone
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure that consists of pigmented stroma and is connected to a sphincter muscle and a dilator muscle which open and close the pupil located in the center of the iris.
TAO:0001238
irises
zebrafish_anatomy
ZFA:0001238
iris
Multi-tissue structure that consists of pigmented stroma and is connected to a sphincter muscle and a dilator muscle which open and close the pupil located in the center of the iris.
GOC:mh
ORCiD:0000-0001-9114-8737
http://www.encyclopedia.thefreedictionary.com/Iris+(anatomy)
irises
Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. Ceratobranchial 5 ossifies before ceratobranchials 1-4. In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined.
TAO:0001239
zebrafish_anatomy
ZFA:0001239
ceratobranchial 5 bone
Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. Ceratobranchial 5 ossifies before ceratobranchials 1-4. In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone and medially with copula 2. Gill rakers are present on the anterior and posterior margins.
TAO:0001240
zebrafish_anatomy
ZFA:0001240
ceratobranchial 4 bone
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone and medially with copula 2. Gill rakers are present on the anterior and posterior margins.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins.
TAO:0001241
zebrafish_anatomy
ZFA:0001241
ceratobranchial 3 bone
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins.
TAO:0001242
zebrafish_anatomy
ZFA:0001242
ceratobranchial 2 bone
Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1.
TAO:0001243
zebrafish_anatomy
ZFA:0001243
epibranchial 1 bone
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial cartilage that is bilaterally paired and appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial 5, to the cartilaginous junction of ceratobranchial 4 and epibranchial 4.
TAO:0001244
interbranchial IV
zebrafish_anatomy
ZFA:0001244
epibranchial 5
Epibranchial cartilage that is bilaterally paired and appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial 5, to the cartilaginous junction of ceratobranchial 4 and epibranchial 4.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. The narrow end of epibranchial 4 is slightly flared, and it articulates with cartilaginous pharyngobranchial 4.
TAO:0001245
zebrafish_anatomy
ZFA:0001245
epibranchial 4 bone
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. The narrow end of epibranchial 4 is slightly flared, and it articulates with cartilaginous pharyngobranchial 4.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1.
TAO:0001246
zebrafish_anatomy
ZFA:0001246
epibranchial 2 bone
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3.
TAO:0001247
infrapharyngobranchial 3
zebrafish_anatomy
ZFA:0001247
epibranchial 3 bone
Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFA:0001223
zebrafish_anatomy
ZFA:0001248
pharyngobranchial 1
true
The exocrine pancreas is a diffuse organ composed of a branching network of ducts and associated acinar glands that manufacture the proteolytic enzymes and bicarbonate required for digestion.
TAO:0001249
zebrafish_anatomy
head pancreas
rostral pancreas
ZFA:0001249
exocrine pancreas
The exocrine pancreas is a diffuse organ composed of a branching network of ducts and associated acinar glands that manufacture the proteolytic enzymes and bicarbonate required for digestion.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-050623-3
head pancreas
ZFIN:ZDB-PUB-080922-7
rostral pancreas
ZFIN:ZDB-PUB-050623-3.
Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage & Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3. It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2. In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it.
TAO:0001250
infrapharyngobranchial 2
zebrafish_anatomy
ZFA:0001250
pharyngobranchial 2 bone
Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage & Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3. It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2. In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it.
GOC:mh
ORCiD:0000-0001-9114-8737
Pharyngobranchial cartilage which forms in close proximity to or fused with pharyngobranchial 3; may not be distinguishable as a separate element in the adult. Remains cartilaginous.
TAO:0001251
infrapharyngobranchial 4 cartilage
infrapharyngobranchials
zebrafish_anatomy
ZFA:0001251
pharyngobranchial 4 cartilage
Pharyngobranchial cartilage which forms in close proximity to or fused with pharyngobranchial 3; may not be distinguishable as a separate element in the adult. Remains cartilaginous.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-192
Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3.
TAO:0001252
pharyngobranchial 3 bones
zebrafish_anatomy
ZFA:0001252
pharyngobranchial 3 bone
Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3.
GOC:mh
ORCiD:0000-0001-9114-8737
pharyngobranchial 3 bones
ZFA:0001224
ZFA:0001225
zebrafish_anatomy
ZFA:0001253
pharyngobranchial 2+3
true
zebrafish_anatomy
ZFA:0001254
cranial motoneurons
true
true
Portion of tissue that is the lateral part of the floor plate.
TAO:0001256
zebrafish_anatomy
ZFA:0001256
lateral floor plate
Portion of tissue that is the lateral part of the floor plate.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue that is the medial part of the floor plate and is located adjacent to the notochord.
TAO:0001257
zebrafish_anatomy
ZFA:0001257
medial floor plate
Portion of tissue that is the medial part of the floor plate and is located adjacent to the notochord.
GOC:mh
ORCiD:0000-0001-9114-8737
Floor plate that is part of the rhombomeres.
TAO:0001258
zebrafish_anatomy
floor plate hindbrain region
ZFA:0001258
floor plate rhombomere region
Floor plate that is part of the rhombomeres.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0001259
forebrain vesicle
prosencephalic ventricle
zebrafish_anatomy
ZFA:0001259
forebrain ventricle
The zebrafish endocrine pancreas is an compound organ component composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin.
TAO:0001260
zebrafish_anatomy
pancreatic islet
tail pancreas
ZFA:0001260
May be called pancreatic islets of Langerhans (related synonym). Alpha cells secrete glucagon like peptide, beta-insulin, delta cells-somatostatin, pancreastatin. May also be called "Brockman bodies".
endocrine pancreas
The zebrafish endocrine pancreas is an compound organ component composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
tail pancreas
ZFIN:ZDB-PUB-080922-7
TAO:0001261
zebrafish_anatomy
ZFA:0001261
ventricular system
Portion of tissue that gives rise to the immature gonad.
TAO:0001262
gonadal primordium
undifferentiated gonad
zebrafish_anatomy
ZFA:0001262
gonad primordium
Portion of tissue that gives rise to the immature gonad.
GOC:mh
ORCiD:0000-0001-9114-8737
Stage I follicles (less than 140 microns) contain a stage 1 oocyte and are in the primary growth stage.
TAO:0001263
ovarian follicle stage 1
previtellogenic ovarian follicle
zebrafish_anatomy
ZFA:0001263
ovarian follicle stage I
Stage I follicles (less than 140 microns) contain a stage 1 oocyte and are in the primary growth stage.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-1020
Stage IV follicles (690-730 microns) contain a stage 4 oocyte and are considered mature.
TAO:0001264
mature ovarian follicle
ovarian follicle stage 4
zebrafish_anatomy
ZFA:0001264
ovarian follicle stage IV
Stage IV follicles (690-730 microns) contain a stage 4 oocyte and are considered mature.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-1020
Stage II follicles (140-340 microns) contain a stage 2 oocyte.
TAO:0001265
ovarian follicle stage 2
ovarian follicles stage II
zebrafish_anatomy
ZFA:0001265
ovarian follicle stage II
Stage II follicles (140-340 microns) contain a stage 2 oocyte.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-1020
ovarian follicles stage II
Stage III follicles (340-690 microns) contain a stage 3 oocyte.
TAO:0001266
ovarian follicle stage 3
ovarian follicles stage III
zebrafish_anatomy
ZFA:0001266
ovarian follicle stage III
Stage III follicles (340-690 microns) contain a stage 3 oocyte.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-1020
ovarian follicles stage III
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the head.
TAO:0001267
head vasculature
zebrafish_anatomy
ZFA:0001267
cranial vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the head.
GOC:cvs
ORCiD:0000-0002-2244-7917
Is a duct part of the testis that carries sperm and fluid to the cloaca.
TAO:0001268
efferent duct
efferent tubule
sperm ducts
zebrafish_anatomy
ZFA:0001268
sperm duct
Is a duct part of the testis that carries sperm and fluid to the cloaca.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
sperm ducts
Fin undergoing the process of regeneration.
TAO:0001269
regenerating fins
zebrafish_anatomy
ZFA:0001269
regenerating fin
Fin undergoing the process of regeneration.
GOC:cvs
ORCiD:0000-0002-2244-7917
regenerating fins
A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise.
TAO:0001270
regeneration blastema
zebrafish_anatomy
ZFA:0001270
blastema
A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-061108-12
regeneration blastema
ZFIN:ZDB-PUB-061108-12
TAO:0001271
posterior pituitary
zebrafish_anatomy
ZFA:0001271
neurohypophysis
The dorsal portion of the first pharyngeal arch, comprising the upper jaw.
TAO:0001272
dorsal mandibular arch
dorsal visceral arch 1
upper jaw
upper pharyngeal jaw
zebrafish_anatomy
ZFA:0001272
palatoquadrate arch
The dorsal portion of the first pharyngeal arch, comprising the upper jaw.
GOC:mh
ORCiD:0000-0001-9114-8737
The ventral portion of the first pharyngeal arch, comprising the lower jaw.
TAO:0001273
lower jaw
mandible
mandibular series
zebrafish_anatomy
ZFA:0001273
ventral mandibular arch
The ventral portion of the first pharyngeal arch, comprising the lower jaw.
GOC:ymb
ORCiD:0000-0002-9900-7880
The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm). In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage.
TAO:0001274
sesamoid articular
zebrafish_anatomy
coronoid
ZFA:0001274
coronomeckelian
The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm). In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFA:0001612
zebrafish_anatomy
ZFA:0001275
mentomeckelian
true
TAO:0001276
hyoid bars
zebrafish_anatomy
ZFA:0001276
pharyngeal arch 2 skeleton
The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the ductus communicans.
TAO:0001277
camera arerea weberiana
zebrafish_anatomy
ZFA:0001277
anterior chamber swim bladder
The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the ductus communicans.
ZFIN:ZDB-PUB-060306-11
The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the ductus communicans. This chamber corresponds to the swim bladder found in larval fish.
TAO:0001278
zebrafish_anatomy
ZFA:0001278
posterior chamber swim bladder
The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the ductus communicans. This chamber corresponds to the swim bladder found in larval fish.
ZFIN:ZDB-PUB-060306-11
Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL).
TAO:0001279
branchiostegal rays 1
zebrafish_anatomy
ZFA:0001279
branchiostegal ray 1
Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL).
GOC:cvs
ORCiD:0000-0002-2244-7917
branchiostegal rays 1
Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL).
TAO:0001280
branchiostegal rays 3
zebrafish_anatomy
ZFA:0001280
branchiostegal ray 3
Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL).
GOC:cvs
ORCiD:0000-0002-2244-7917
branchiostegal rays 3
Branchiostegal ray 2 is between rays 1 and 3 and ossifies second.
TAO:0001281
branchiostegal rays 2
zebrafish_anatomy
ZFA:0001281
branchiostegal ray 2
Branchiostegal ray 2 is between rays 1 and 3 and ossifies second.
GOC:cvs
ORCiD:0000-0002-2244-7917
branchiostegal rays 2
The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish.
TAO:0001282
anterior hypophysis
anterior pituitary
zebrafish_anatomy
ZFA:0001282
Changed start to long-pec from protruding mouth. In future, make a primordium and split the stages.
adenohypophysis
The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish.
ZFIN:ZDB-PUB-040202-1
Anatomical space that is located in the center of the iris and allows light to impinge on the retina.
TAO:0001283
pupils
zebrafish_anatomy
ZFA:0001283
pupil
Anatomical space that is located in the center of the iris and allows light to impinge on the retina.
GOC:mh
ORCiD:0000-0001-9114-8737
http://www.encyclopedia.thefreedictionary.com/pupil
pupils
Groove that is in the ventral optic cup and through which blood vessels pass to the enclosed mesenchyme.
TAO:0001284
optic fissures
zebrafish_anatomy
choroid fissure
ZFA:0001284
optic fissure
Groove that is in the ventral optic cup and through which blood vessels pass to the enclosed mesenchyme.
http://www.medical-dictionary.thefreedictionary.com/optic+fissure
optic fissures
Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers.
TAO:0001285
intersegmental vessels
intersomitic vessels
segmental vessel
zebrafish_anatomy
ZFA:0001285
intersegmental vessel
Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-030908-4
intersegmental vessels
Post-vent vasculature which forms an interconnecting network of venous tubes. The caudal vein plexus forms via a very active period of angiogenic sprouting, beginning at 25 hpf when venous endothelial cells of the posterior cardinal vein sprout and migrate ventrally, then fuse with neighboring tip cells. This process reiterates during a five-hour window, forming a primordial plexus by 30 hpf. By two days of development, the primitive caudal vein plexus has matured into a complex, well-perfused, venous vascular network. Starting at 4 dpf the caudal vein plexus starts to remodel and simplify.
TAO:0001286
zebrafish_anatomy
ZFA:0001286
caudal vein plexus
Post-vent vasculature which forms an interconnecting network of venous tubes. The caudal vein plexus forms via a very active period of angiogenic sprouting, beginning at 25 hpf when venous endothelial cells of the posterior cardinal vein sprout and migrate ventrally, then fuse with neighboring tip cells. This process reiterates during a five-hour window, forming a primordial plexus by 30 hpf. By two days of development, the primitive caudal vein plexus has matured into a complex, well-perfused, venous vascular network. Starting at 4 dpf the caudal vein plexus starts to remodel and simplify.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
ZFIN:ZDB-PUB-111011-36
Renal duct that collects filtrate from the renal corpuscle and transports it to the collecting duct. Different parts of the renal tubule reabsorb specific components of the filtrate to leave only waste.
TAO:0001287
mesonephric tubule
renal tubules
zebrafish_anatomy
ZFA:0001287
renal tubule
Renal duct that collects filtrate from the renal corpuscle and transports it to the collecting duct. Different parts of the renal tubule reabsorb specific components of the filtrate to leave only waste.
GOC:cvs
ORCiD:0000-0002-2244-7917
renal tubules
The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes, filters blood from the glomerular capillaries.
TAO:0001288
renal glomeruli
zebrafish_anatomy
glomerular capillary tuft
ZFA:0001288
renal glomerulus
The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes, filters blood from the glomerular capillaries.
GOC:cvs
ORCiD:0000-0002-2244-7917
renal glomeruli
Proliferative region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.
TAO:0001289
CMZ
circumferential germinal zone
peripheral growth zone
retinal ciliary marginal zone
zebrafish_anatomy
retinal proliferative zone
ZFA:0001289
ciliary marginal zone
Proliferative region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-050427-5
Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.
TAO:0001290
zebrafish_anatomy
oral ectoderm
ZFA:0001290
stomodeum
Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-050523-10
oral ectoderm
ZFIN:ZDB-PUB-100726-23
The sensory ganglion of the facial nerve.
TAO:0001291
gVII
geniculate ganglion
zebrafish_anatomy
ZFA:0001291
facial ganglion
The sensory ganglion of the facial nerve.
GOC:mh
ORCiD:0000-0001-9114-8737
The stalk emanates from the diencephalic roof at a left-of-medial position.
TAO:0001292
pineal stalk
zebrafish_anatomy
ZFA:0001292
epiphyseal stalk
The stalk emanates from the diencephalic roof at a left-of-medial position.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0001293
posterior kidneys
zebrafish_anatomy
ZFA:0001293
posterior kidney
posterior kidneys
Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear and dorsally to the posterior pharyngeal pouches.
TAO:0001294
epibranchial placodes
zebrafish_anatomy
ZFA:0001294
epibranchial placode
Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear and dorsally to the posterior pharyngeal pouches.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-050804-2
ZFIN:ZDB-PUB-070122-31
epibranchial placodes
Epibranchial placode that gives rise to the facial ganglia.
TAO:0001295
geniculate placode
zebrafish_anatomy
ZFA:0001295
facial placode
Epibranchial placode that gives rise to the facial ganglia.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070122-31
Epibranchial placode that gives rise to the glossopharyngeal ganglia. Associated with the third pharyngeal arch.
TAO:0001296
petrosal placode
zebrafish_anatomy
ZFA:0001296
glossopharyngeal placode
Epibranchial placode that gives rise to the glossopharyngeal ganglia. Associated with the third pharyngeal arch.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070122-31
Epibranchial placode that gives rise to vagal ganglion 1.
TAO:0001297
zebrafish_anatomy
ZFA:0001297
vagal placode 1
Epibranchial placode that gives rise to vagal ganglion 1.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070122-31
Epibranchial placode that gives rise to vagal ganglion 2.
TAO:0001298
zebrafish_anatomy
ZFA:0001298
vagal placode 2
Epibranchial placode that gives rise to vagal ganglion 2.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070122-31
Epibranchial placode that gives rise to vagal ganglion 3.
TAO:0001299
zebrafish_anatomy
ZFA:0001299
vagal placode 3
Epibranchial placode that gives rise to vagal ganglion 3.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070122-3
Epibranchial placode that gives rise to vagal ganglion 4.
TAO:0001300
zebrafish_anatomy
ZFA:0001300
vagal placode 4
Epibranchial placode that gives rise to vagal ganglion 4.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070122-31
TAO:0001301
gIX
petrosal ganglion
zebrafish_anatomy
ZFA:0001301
glossopharyngeal ganglion
TAO:0001302
gX1
nodose ganglion 1
zebrafish_anatomy
ZFA:0001302
vagal ganglion 1
TAO:0001303
gX2
nodose ganglion 2
zebrafish_anatomy
ZFA:0001303
vagal ganglion 2
TAO:0001304
gX3
nodose ganglion 3
zebrafish_anatomy
ZFA:0001304
vagal ganglion 3
TAO:0001305
gX4
nodose ganglion 4
zebrafish_anatomy
ZFA:0001305
vagal ganglion 4
One of a series of paired bony or cartilaginous arches that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. There are seven pharyngeal arches.
TAO:0001306
pharyngeal arches
zebrafish_anatomy
ZFA:0001306
pharyngeal arch
One of a series of paired bony or cartilaginous arches that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. There are seven pharyngeal arches.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-16
ZFIN:ZDB-PUB-131119-6
ZFIN:ZDB-PUB-961014-985
pharyngeal arches
Muscle system of the pharyngeal region.
TAO:0001307
zebrafish_anatomy
ZFA:0001307
pharyngeal musculature
Muscle system of the pharyngeal region.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism.
CARO:0000032
TAO:0001308
body part
zebrafish_anatomy
ZFA:0001308
organism subdivision
Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism.
GOC:mh
ORCiD:0000-0001-9114-8737
Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia.
TAO:0001309
neurogenic placodes
zebrafish_anatomy
ZFA:0001309
neurogenic placode
Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-050804-2
ZFIN:ZDB-PUB-070122-31
neurogenic placodes
Lateral neurogenic placodes positioned dorsal of the epibranchial placodes.
TAO:0001310
dorsolateral placodes
zebrafish_anatomy
ZFA:0001310
dorsolateral placode
Lateral neurogenic placodes positioned dorsal of the epibranchial placodes.
GOC:mh
ORCiD:0000-0001-9114-8737
dorsolateral placodes
TAO:0001311
zebrafish_anatomy
roof plate hindbrain
ZFA:0001311
roof plate rhombomere region
TAO:0001312
anterodorsal lateral line ganglion
zebrafish_anatomy
ZFA:0001312
dorsal anterior lateral line ganglion
TAO:0001313
anteroventral lateral line ganglion
zebrafish_anatomy
ZFA:0001313
ventral anterior lateral line ganglion
The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system.
TAO:0001314
pLLg
posterior lateral line ganglia
zebrafish_anatomy
ZFA:0001314
posterior lateral line ganglion
The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system.
GOC:ymb
ORCiD:0000-0002-9900-7880
posterior lateral line ganglia
The part of the heart connecting the atrium to the cardiac ventricle.
TAO:0001315
AV canal
AVC
zebrafish_anatomy
ZFA:0001315
atrioventricular canal
The part of the heart connecting the atrium to the cardiac ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Dorsolateral placode that gives rise to the anterior lateral line.
TAO:0001316
anterior lateral line placodes
zebrafish_anatomy
ZFA:0001316
anterior lateral line placode
Dorsolateral placode that gives rise to the anterior lateral line.
GOC:ymb
ORCiD:0000-0002-9900-7880
anterior lateral line placodes
Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves.
TAO:0001317
endocardial cushions
zebrafish_anatomy
ZFA:0001317
ZDB-PUB-080309-14 says these don't exist but looked at 55 hpf rather then 36 hpf.
endocardial cushion
Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves.
GOC:cvs
ORCiD:0000-0002-2244-7917
endocardial cushions
The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates.
TAO:0001318
zebrafish_anatomy
ZFA:0001318
cardiac jelly
The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0001319
zebrafish_anatomy
cardiac muscle
heart muscle
ZFA:0001319
myocardium
Layer that lines the lumen of the heart.
TAO:0001320
zebrafish_anatomy
ZFA:0001320
endocardium
Layer that lines the lumen of the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0001321
neurocranial trabeculae
trabecula
trabecular cartilage
zebrafish_anatomy
ZFA:0001321
neurocranial trabecula
neurocranial trabeculae
A tract originating in the epiphysis and fasciculating with the tract of the postoptic commissure dorsal to the ventral flexure.
TAO:0001322
DVDT
zebrafish_anatomy
ZFA:0001322
dorsoventral diencephalic tract
A tract originating in the epiphysis and fasciculating with the tract of the postoptic commissure dorsal to the ventral flexure.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-719
ZFIN:ZDB-PUB-961014-955
The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. The mid intestine also appears to be involved in iron absorption.
TAO:0001323
zebrafish_anatomy
ZFA:0001323
mid intestine
The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. The mid intestine also appears to be involved in iron absorption.
ZFIN:ZDB-PUB-050120-6
ZFIN:ZDB-PUB-050831-7
Musculature of the gut.
TAO:0001324
gut musculature
zebrafish_anatomy
tunica muscularis
ZFA:0001324
enteric musculature
Musculature of the gut.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
tunica muscularis
http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html
Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra.
TAO:0001325
neural prezygapophyses
neural prezygopophyses
zebrafish_anatomy
ZFA:0001325
neural prezygapophysis
Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra.
GOC:mh
ORCiD:0000-0001-9114-8737
neural prezygapophyses
Epithelium which borders the anterior and equitorial region of the lens. Lens growth in zebrafish occurs via the differentiation of additional fibre cells from lens epithelial cells.
TAO:0001326
zebrafish_anatomy
ZFA:0001326
lens epithelium
Epithelium which borders the anterior and equitorial region of the lens. Lens growth in zebrafish occurs via the differentiation of additional fibre cells from lens epithelial cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070504-24
ZFIN:ZDB-PUB-100202-20
Trunk musculature that is located in ventral wall of abdomen.
TAO:0001327
zebrafish_anatomy
ZFA:0001327
abdominal musculature
Trunk musculature that is located in ventral wall of abdomen.
GOC:mh
ORCiD:0000-0001-9114-8737
A metameric segment of the central nervous system.
TAO:0001328
neural segment
neuromeres
zebrafish_anatomy
ZFA:0001328
neuromere
A metameric segment of the central nervous system.
GOC:mh
ORCiD:0000-0001-9114-8737
neuromeres
The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.
TAO:0001329
inner plexiform layer
zebrafish_anatomy
ZFA:0001329
retinal inner plexiform layer
The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.
GOC:mh
ORCiD:0000-0001-9114-8737
The layer within the retina where the bipolar cells synapse with the photoreceptor cells.
TAO:0001330
retinal outer plexiform layers
zebrafish_anatomy
ZFA:0001330
retinal outer plexiform layer
The layer within the retina where the bipolar cells synapse with the photoreceptor cells.
GOC:mh
ORCiD:0000-0001-9114-8737
retinal outer plexiform layers
Layer that separates the inner segment portions of the photo receptors from their cell nucleus.
TAO:0001331
external limiting membrane
outer limiting membranes
zebrafish_anatomy
ZFA:0001331
outer limiting membrane
Layer that separates the inner segment portions of the photo receptors from their cell nucleus.
GOC:mh
ORCiD:0000-0001-9114-8737
outer limiting membranes
TAO:0001332
spinal cord segment
spinal neuromeres
zebrafish_anatomy
ZFA:0001332
spinal neuromere
spinal neuromeres
zebrafish_anatomy
ZFA:0001333
visceral organ
true
Presumptive structure fated to become enteric nervous system. Develops from the vagal neural crest.
TAO:0001334
zebrafish_anatomy
ZFA:0001334
presumptive enteric nervous system
Presumptive structure fated to become enteric nervous system. Develops from the vagal neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001).
TAO:0001335
supradorsals
zebrafish_anatomy
ZFA:0001335
supradorsal
Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001).
GOC:mh
ORCiD:0000-0001-9114-8737
supradorsals
Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon).
TAO:0001336
neural spines
zebrafish_anatomy
ZFA:0001336
neural spine
Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon).
GOC:mh
ORCiD:0000-0001-9114-8737
neural spines
true
Folded tube that has parts intestinal bulb, mid intestine and posterior intestine. The intestine is where digestion and nutrient absorption occurs.
TAO:0001338
zebrafish_anatomy
ZFA:0001338
intestine
Folded tube that has parts intestinal bulb, mid intestine and posterior intestine. The intestine is where digestion and nutrient absorption occurs.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-050120-6
Telencephalic nucleus from which the axons of the anterior commissure originate.
TAO:0001339
ntAC
zebrafish_anatomy
ZFA:0001339
nucleus of the tract of the anterior commissure
Telencephalic nucleus from which the axons of the anterior commissure originate.
GOC:mh
ORCiD:0000-0001-9114-8737
The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure.
TAO:0001340
ntPOC
zebrafish_anatomy
ZFA:0001340
nucleus of the tract of the postoptic commissure
The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure.
GOC:mh
ORCiD:0000-0001-9114-8737
A zone of delayed differentiation at the midbrain hindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates.
TAO:0001341
IZ
zebrafish_anatomy
ZFA:0001341
intervening zone
A zone of delayed differentiation at the midbrain hindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates.
ZFIN:ZDB-PUB-030307-1
Embryonic structure that gives rise to the intervening zone.
TAO:0001342
zebrafish_anatomy
ZFA:0001342
presumptive intervening zone
Embryonic structure that gives rise to the intervening zone.
GOC:mh
ORCiD:0000-0001-9114-8737
Boundary between the telencephalon and diencephalon.
TAO:0001343
zebrafish_anatomy
ZFA:0001343
telencephalon diencephalon boundary
Boundary between the telencephalon and diencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
The border between the dorsal and ventral thalamus.
TAO:0001344
zli
zebrafish_anatomy
ZFA:0001344
zona limitans intrathalamica
The border between the dorsal and ventral thalamus.
GOC:mh
ORCiD:0000-0001-9114-8737
An bilobed multi-tissue structure lateral to the notochord composed of an epithelium consisting of steroid producing cells interposed with chromaffin cells. The interrenal gland is embedded within the head kidney. The interrenal gland is the zebrafish functional equivalent of the mammalian adrenal cortex.
TAO:0001345
zebrafish_anatomy
ZFA:0001345
interrenal gland
An bilobed multi-tissue structure lateral to the notochord composed of an epithelium consisting of steroid producing cells interposed with chromaffin cells. The interrenal gland is embedded within the head kidney. The interrenal gland is the zebrafish functional equivalent of the mammalian adrenal cortex.
GOC:cvs
GOC:mh
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-030408-12
ZFIN:ZDB-PUB-061108-13
Multi-tissue structure located in the kidney that develops into the interrenal gland.
TAO:0001346
zebrafish_anatomy
ZFA:0001346
interrenal primordium
Multi-tissue structure located in the kidney that develops into the interrenal gland.
GOC:cvs
ORCiD:0000-0002-2244-7917
Layer of the optic tectum that is ventral to the stratum opticum and dorsal to the stratum griseum centrale, contains three sublaminae. Has hypothalamic and retinal inputs.
TAO:0001347
strata fibrosum et griseum superficiales
zebrafish_anatomy
SFGS
ZFA:0001347
stratum fibrosum et griseum superficiale
Layer of the optic tectum that is ventral to the stratum opticum and dorsal to the stratum griseum centrale, contains three sublaminae. Has hypothalamic and retinal inputs.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-081218-37
ZFIN:ZDB-PUB-101011-44
ZFIN:ZDB-PUB-180207-5
strata fibrosum et griseum superficiales
Dorsalmost layer of the tectal neuropile that does not receive direct retinal inputs, receives axonal projections from the torus longitudinalis.
TAO:0001348
strata marginale
stratum fibrosum marginale
zebrafish_anatomy
ZFA:0001348
stratum marginale
Dorsalmost layer of the tectal neuropile that does not receive direct retinal inputs, receives axonal projections from the torus longitudinalis.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180207-5
strata marginale
stratum fibrosum marginale
ZFIN:ZDB-PUB-180207-5
Portion of tissue that is the most superficial layer of the tectal neuropil closest to the eye target of the retinal axons.
TAO:0001349
strata opticum
zebrafish_anatomy
ZFA:0001349
stratum opticum
Portion of tissue that is the most superficial layer of the tectal neuropil closest to the eye target of the retinal axons.
ZFIN:ZDB-PUB-101101-16
strata opticum
TAO:0001350
zebrafish_anatomy
ZFA:0001350
stratum griseum centrale
Has hypothalamic inputs.
TAO:0001351
strata album centrales
zebrafish_anatomy
ZFA:0001351
stratum album centrale
Has hypothalamic inputs.
ZFIN:ZDB-PUB-180207-5
strata album centrales
true
true
true
The vascularized fibrous sheath that surrounds the central nervous system.
TAO:0001355
meninges
meninx primitiva
zebrafish_anatomy
ZFA:0001355
primitive meninx
The vascularized fibrous sheath that surrounds the central nervous system.
http://www.archive.org/stream/contributionstoe04carn#page/n3/mode/2up
The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest.
TAO:0001356
nervus terminalis
zebrafish_anatomy
ZFA:0001356
terminal nerve
The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest.
PMID:15821344
ZFIN:ZDB-PUB-041202-1
Portion of tissue that is ventrolateral to the roof plate and part of the midbrain.
TAO:0001357
zebrafish_anatomy
ZFA:0001357
alar plate midbrain region
Portion of tissue that is ventrolateral to the roof plate and part of the midbrain.
ISBN:0444517383
ZFIN:ZDB-PUB-961014-576
Roof plate that is part of the diencephalic region.
TAO:0001358
zebrafish_anatomy
ZFA:0001358
roof plate diencephalic region
Roof plate that is part of the diencephalic region.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
TAO:0001359
zebrafish_anatomy
ZFA:0001359
pineal complex
An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry.
TAO:0001360
zebrafish_anatomy
ZFA:0001360
parapineal organ
An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry.
ZFIN:ZDB-PUB-030206-1
Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches.
TAO:0001361
zebrafish_anatomy
arcualia
ZFA:0001361
basiventral
Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches.
GOC:mh
ORCiD:0000-0001-9114-8737
Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops.
TAO:0001362
lateral process of basiventral
parapophyses
transverse process
zebrafish_anatomy
ZFA:0001362
parapophysis
Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops.
GOC:mh
ORCiD:0000-0001-9114-8737
parapophyses
The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae (Hoffmann and Britz, 2006).
ZFA:0001398
TAO:0001363
Weberian supraneural
zebrafish_anatomy
ZFA:0001363
neural complex
The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae (Hoffmann and Britz, 2006).
ZFIN:ZDB-PUB-031103-13
Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region.
TAO:0001364
haemal spine
zebrafish_anatomy
ZFA:0001364
hemal spine
Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0001365
motor nucleus V
nV
zebrafish_anatomy
ZFA:0001365
trigeminal motor nucleus
Tract that extends from the postoptic commissure through a curved trajectory in the diencephalon into the ventral midbrain. In the anterior diencephalon the TOP is a single tract but caudally the axons of the TPOC diverge and tend to grow in distinct parallel bundles. The more dorsal bundles extend in the dorsolateral tegmentum, the ventral bundles of the TPOC merge into the DLF in the hindbrain.
TAO:0001366
TPOC
zebrafish_anatomy
ZFA:0001366
tract of the postoptic commissure
Tract that extends from the postoptic commissure through a curved trajectory in the diencephalon into the ventral midbrain. In the anterior diencephalon the TOP is a single tract but caudally the axons of the TPOC diverge and tend to grow in distinct parallel bundles. The more dorsal bundles extend in the dorsolateral tegmentum, the ventral bundles of the TPOC merge into the DLF in the hindbrain.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-167
The boundary between the diencephalon and the mesencephalon.
TAO:0001367
diencephalic-mesencephalic boundary
zebrafish_anatomy
ZFA:0001367
forebrain midbrain boundary
The boundary between the diencephalon and the mesencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
Embryonic structure that gives rise to the forebrain midbrain boundary.
TAO:0001368
zebrafish_anatomy
ZFA:0001368
presumptive forebrain midbrain boundary
Embryonic structure that gives rise to the forebrain midbrain boundary.
GOC:mh
ORCiD:0000-0001-9114-8737
Pancreatic bud that develops from a ridge on the ventral side of the intestinal bulb primordium.
TAO:0001369
exocrine anlage
rostral anlage
ventral anterior bud
ventral pancreatic anlage
zebrafish_anatomy
ZFA:0001369
anterior pancreatic bud
Pancreatic bud that develops from a ridge on the ventral side of the intestinal bulb primordium.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-030902-16
exocrine anlage
ZFIN:ZDB-PUB-050623-3
ventral anterior bud
ZFIN:ZDB-PUB-030902-16
Pancreatic bud that forms dorsal and adjacent to the developing intestine.
TAO:0001370
caudal anlage
dorsal pancreatic anlage
zebrafish_anatomy
dorsal posterior bud
ZFA:0001370
Furthermore, zebrafish exocrine progenitors appear to arise from endoderm rostral to the gut tube, which it subsequently joins, rather than as an extension of the epithelium of the main duct. Thus, we argue against a classical model (Field et al., 2003) in which the zebrafish exocrine pancreas buds from either a rod of pre-intestinal endoderm or the gut tube which in zebrafish gives rise to the intestine (Wallace and Pack, 2003). ZDB-PUB-050623-3.
posterior pancreatic bud
Pancreatic bud that forms dorsal and adjacent to the developing intestine.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-030902-16
dorsal posterior bud
ZFIN:ZDB-PUB-030902-16
System responsible for the production and movement of pancreatic hormones and enzymes.
TAO:0001371
zebrafish_anatomy
ZFA:0001371
pancreatic system
System responsible for the production and movement of pancreatic hormones and enzymes.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Duct that collects and carries secretions of the exocrine pancreas.
TAO:0001372
zebrafish_anatomy
ZFA:0001372
pancreatic duct
Duct that collects and carries secretions of the exocrine pancreas.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Cells that initially are located adjacent to the spinal cord and notochord that migrate from their initial medial position radially through the myotome to the lateral surface of the somites.
TAO:0001373
migratory slow muscle precursor cells
zebrafish_anatomy
ZFA:0001373
migratory slow muscle precursor cell
Cells that initially are located adjacent to the spinal cord and notochord that migrate from their initial medial position radially through the myotome to the lateral surface of the somites.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961219-12
migratory slow muscle precursor cells
Myocardium of the heart atrium.
TAO:0001374
zebrafish_anatomy
ZFA:0001374
atrial myocardium
Myocardium of the heart atrium.
GOC:cvs
ORCiD:0000-0002-2244-7917
A heart valve located between the ventricle and bulbus arteriosus.
TAO:0001375
bulboventricular valve
zebrafish_anatomy
ZFA:0001375
ventriculo bulbo valve
A heart valve located between the ventricle and bulbus arteriosus.
GOC:cvs
ORCiD:0000-0002-2244-7917
Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping.
ZFA:0000147
TAO:0001376
presumptive epidermis
zebrafish_anatomy
ZFA:0001376
presumptive ectoderm
Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping.
ZFIN:ZDB-PUB-961014-608
Presumptive structure fated to become mesoderm. Determined by fate mapping.
TAO:0001377
zebrafish_anatomy
ZFA:0001377
presumptive mesoderm
Presumptive structure fated to become mesoderm. Determined by fate mapping.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Region of the hypoblast that is located along the rostral-caudal axis of the embryo.
TAO:0001378
zebrafish_anatomy
ZFA:0001378
axial hypoblast
Region of the hypoblast that is located along the rostral-caudal axis of the embryo.
GOC:cvs
ORCID:0000-0002-2244-7917
TAO:0001379
zebrafish_anatomy
ZFA:0001379
pharyngeal ectoderm
true
Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present.
TAO:0001381
hypohyals
zebrafish_anatomy
ZFA:0001381
hypohyal bone
Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present.
GOC:mh
ORCiD:0000-0001-9114-8737
hypohyals
Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm).
TAO:0001382
epibranchial uncinate processes
zebrafish_anatomy
ZFA:0001382
epibranchial uncinate process
Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm).
GOC:mh
ORCiD:0000-0001-9114-8737
epibranchial uncinate processes
Surface structure that develops into a paired fin.
TAO:0001383
fin buds
zebrafish_anatomy
ZFA:0001383
fin bud
Surface structure that develops into a paired fin.
GOC:mh
ORCiD:0000-0001-9114-8737
fin buds
Fin bud that develops into the pelvic fin.
TAO:0001384
pelvic fin buds
zebrafish_anatomy
ZFA:0001384
pelvic fin bud
Fin bud that develops into the pelvic fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
pelvic fin buds
Apical ectodermal ridge that is part of the pelvic fin bud.
TAO:0001385
apical ectodermal ridge pelvic fin buds
zebrafish_anatomy
ZFA:0001385
apical ectodermal ridge pelvic fin bud
Apical ectodermal ridge that is part of the pelvic fin bud.
GOC:cvs
ORCiD:0000-0002-2244-7917
apical ectodermal ridge pelvic fin buds
Mesoderm part of pelvic fin bud.
TAO:0001386
mesoderm pelvic fin buds
zebrafish_anatomy
ZFA:0001386
mesoderm pelvic fin bud
Mesoderm part of pelvic fin bud.
GOC:cvs
ORCiD:0000-0002-2244-7917
mesoderm pelvic fin buds
Skeleton that supports the pelvic fin. The skeleton consists of consists of supporting endochondral radials and dermal fin rays or lepidotrichia.
TAO:0001387
zebrafish_anatomy
ZFA:0001387
pelvic fin skeleton
Skeleton that supports the pelvic fin. The skeleton consists of consists of supporting endochondral radials and dermal fin rays or lepidotrichia.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0001388
epithelial mesenchymal boundarys
zebrafish_anatomy
ZFA:0001388
epithelial mesenchymal boundary
epithelial mesenchymal boundarys
Epithelium of the regenerating fin that is formed as part of the healing process.
TAO:0001389
epidermal cap
wound epidermis
wound epithelium
zebrafish_anatomy
ZFA:0001389
regeneration epithelium
Epithelium of the regenerating fin that is formed as part of the healing process.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Embryonic structure that develops from the pancreas primordium and develops into the pancreas. At Prim-5 the buds are located between the dorsal aorta and the posterior cardinal vein.
TAO:0001390
pancreatic buds
zebrafish_anatomy
ZFA:0001390
pancreatic bud
Embryonic structure that develops from the pancreas primordium and develops into the pancreas. At Prim-5 the buds are located between the dorsal aorta and the posterior cardinal vein.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-191011-21
pancreatic buds
The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system.
TAO:0001391
anterior lateral line ganglia
zebrafish_anatomy
ZFA:0001391
anterior lateral line ganglion
The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system.
GOC:ymb
ORCiD:0000-0002-9900-7880
anterior lateral line ganglia
Lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996).
TAO:0001392
basipophysis 1
lateral process 1
zebrafish_anatomy
ZFA:0001392
parapophysis 1
Lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996).
GOC:mh
ORCiD:0000-0001-9114-8737
Lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996).
TAO:0001393
basipophysis
lateral process 2
zebrafish_anatomy
ZFA:0001393
parapophysis 2
Lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996).
GOC:mh
ORCiD:0000-0001-9114-8737
Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal.
TAO:0001394
zebrafish_anatomy
ZFA:0001394
neural arch 3
Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal.
GOC:mh
ORCiD:0000-0001-9114-8737
Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex.
TAO:0001395
zebrafish_anatomy
ZFA:0001395
neural arch 4
Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex.
GOC:mh
ORCiD:0000-0001-9114-8737
The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface.
TAO:0001396
zebrafish_anatomy
ZFA:0001396
parapophysis/rib
The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface.
GOC:mh
ORCiD:0000-0001-9114-8737
Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish.
TAO:0001397
post-Weberian supraneurals
zebrafish_anatomy
ZFA:0001397
post-Weberian supraneural
Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-031103-13
post-Weberian supraneurals
true
Cartilage that is the dorsal component of the first pharyngeal arch. It is roughly triangular with slightly concave dorsal edges and convex ventral edges. The anteroventral corner gives rise the quadrate and articulates with the posterior end of Meckel's cartilage. The anterodorsal tip articulates with the lateral edge of the ethmoid plate and the posteroventral edge articulates with the anterodorsal edge of the hyosymplectic.
TAO:0001399
dorsal mandibular cartilage
pterygoquadrate
quadrate cartilage
zebrafish_anatomy
ZFA:0001399
palatoquadrate cartilage
Cartilage that is the dorsal component of the first pharyngeal arch. It is roughly triangular with slightly concave dorsal edges and convex ventral edges. The anteroventral corner gives rise the quadrate and articulates with the posterior end of Meckel's cartilage. The anterodorsal tip articulates with the lateral edge of the ethmoid plate and the posteroventral edge articulates with the anterodorsal edge of the hyosymplectic.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch.
TAO:0001400
zebrafish_anatomy
ZFA:0001400
ceratohyal cartilage
Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0001401
dorsal visceral arch 2
zebrafish_anatomy
ZFA:0001401
dorsal hyoid arch
TAO:0001402
ventral visceral arch 2
zebrafish_anatomy
ZFA:0001402
ventral hyoid arch
Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anteriolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal.
TAO:0001403
zebrafish_anatomy
supra-ethmoid
ZFA:0001403
supraethmoid
Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anteriolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal.
GOC:mh
ORCiD:0000-0001-9114-8737
Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms.
TAO:0001404
pre-ethmoid
preethmoid bones
zebrafish_anatomy
ZFA:0001404
preethmoid bone
Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms.
GOC:mh
ORCiD:0000-0001-9114-8737
preethmoid bones
Bilaterally paired neurocranium cartilage which is initially plate-like and formed from the anterior fusion between the bilaterally paired trabecula cranii. It grows dorsally between the laminae orbitonasales to attain a complex shape.
TAO:0001405
ethmoid plate
zebrafish_anatomy
ZFA:0001405
ethmoid cartilage
Bilaterally paired neurocranium cartilage which is initially plate-like and formed from the anterior fusion between the bilaterally paired trabecula cranii. It grows dorsally between the laminae orbitonasales to attain a complex shape.
GOC:mh
ORCiD:0000-0001-9114-8737
Small median unpaired dermal sesamoid bone in the premaxillary-ethmoid ligament between the mesethmoid and the premaxilla that enhances the protractability of the upper jaw. It forms in the premaxillary-ethmoid ligament. The kinethmoid arose de novo in the ancestor of Cypriniformes, the only group within Ostariophysi, in which it is found (Fink and Fink, 1981).
TAO:0001406
zebrafish_anatomy
ZFA:0001406
kinethmoid bone
Small median unpaired dermal sesamoid bone in the premaxillary-ethmoid ligament between the mesethmoid and the premaxilla that enhances the protractability of the upper jaw. It forms in the premaxillary-ethmoid ligament. The kinethmoid arose de novo in the ancestor of Cypriniformes, the only group within Ostariophysi, in which it is found (Fink and Fink, 1981).
GOC:mh
ORCiD:0000-0001-9114-8737
Plate like dermal bone, variable in size, though usually one of the smallest in the series. Bears 2-3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969).
TAO:0001407
zebrafish_anatomy
ZFA:0001407
infraorbital 2
Plate like dermal bone, variable in size, though usually one of the smallest in the series. Bears 2-3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969).
GOC:mh
ORCiD:0000-0001-9114-8737
Plate like dermal bone, variable in size, but usually largest in the series. Usually fused with IO4 (eg. Opsariichthys, Nelson (1969)). Usually bears 3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969).
TAO:0001408
zebrafish_anatomy
ZFA:0001408
infraorbital 3
Plate like dermal bone, variable in size, but usually largest in the series. Usually fused with IO4 (eg. Opsariichthys, Nelson (1969)). Usually bears 3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969).
GOC:mh
ORCiD:0000-0001-9114-8737
Plate like dermal bone. Usually fused with infraorbital 3.
TAO:0001409
zebrafish_anatomy
ZFA:0001409
infraorbital 4
Plate like dermal bone. Usually fused with infraorbital 3.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical cluster that is a anteriolateral part of the cranium and structurally supports the eye.
TAO:0001410
zebrafish_anatomy
ZFA:0001410
orbital region
Anatomical cluster that is a anteriolateral part of the cranium and structurally supports the eye.
GOC:mh
ORCiD:0000-0001-9114-8737
A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid. The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye.
TAO:0001411
scleral ossicle
sclerotic bones
zebrafish_anatomy
ZFA:0001411
sclerotic bone
A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid. The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070629-20
sclerotic bones
Cartilage bone that contacts the pterotic anteriorly, the supraoccipital and parietal dorsally, and the exoccipital ventrally. The epiotic enclose the posterior semicircular canal of the inner ear and contribute to the hind margin of the cranium.
ZFA:0000659
TAO:0001412
epioccipital
zebrafish_anatomy
ZFA:0001412
epiotic
Cartilage bone that contacts the pterotic anteriorly, the supraoccipital and parietal dorsally, and the exoccipital ventrally. The epiotic enclose the posterior semicircular canal of the inner ear and contribute to the hind margin of the cranium.
GOC:mh
ORCiD:0000-0001-9114-8737
true
Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyle.
TAO:0001414
basicranial region
zebrafish_anatomy
ZFA:0001414
occipital region
Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyle.
GOC:mh
ORCiD:0000-0001-9114-8737
Second radial of the pelvic fin.
TAO:0001415
pelvic radials 2
zebrafish_anatomy
ZFA:0001415
pelvic radial 2
Second radial of the pelvic fin.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic radials 2
Third radial of the pelvic fin.
TAO:0001416
pelvic radials 3
zebrafish_anatomy
ZFA:0001416
pelvic radial 3
Third radial of the pelvic fin.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic radials 3
First radial of the pelvic fin.
TAO:0001417
pelvic radials 1
zebrafish_anatomy
ZFA:0001417
pelvic radial 1
First radial of the pelvic fin.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic radials 1
Lepidotrichium which is part of the dorsal fin. Bony, bilaterally paired segmented dermal ossification extending distally from the endoskeletal supports. They develop around actinotrichia as part of the dermal exoskeleton.
TAO:0001418
dorsal fin lepidotrichia
dorsal fin ray
zebrafish_anatomy
ZFA:0001418
dorsal fin lepidotrichium
Lepidotrichium which is part of the dorsal fin. Bony, bilaterally paired segmented dermal ossification extending distally from the endoskeletal supports. They develop around actinotrichia as part of the dermal exoskeleton.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
dorsal fin lepidotrichia
A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18.
TAO:0001419
dorsal fin support
zebrafish_anatomy
ZFA:0001419
dorsal fin pterygiophore
A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21.
TAO:0001420
zebrafish_anatomy
anal fin radial
ZFA:0001420
anal fin pterygiophore
A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21.
GOC:cvs
ORCiD:0000-0002-2244-7917
Lepidotrichium which is part of the anal fin.
TAO:0001421
anal fin lepidotrichia
anal fin ray
zebrafish_anatomy
ZFA:0001421
anal fin lepidotrichium
Lepidotrichium which is part of the anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
anal fin lepidotrichia
Bilaterally paired large cartilage that articulates with the chondrocranium dorsally, the opercle posteriorly, and the palatoquadrate cartilage anteriorly.
TAO:0001422
hyomandibular cartilage
zebrafish_anatomy
ZFA:0001422
hyosymplectic cartilage
Bilaterally paired large cartilage that articulates with the chondrocranium dorsally, the opercle posteriorly, and the palatoquadrate cartilage anteriorly.
GOC:mh
ORCiD:0000-0001-9114-8737
Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones.
TAO:0001423
parachordal cartilages
zebrafish_anatomy
ZFA:0001423
parachordal cartilage
Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones.
GOC:mh
ORCiD:0000-0001-9114-8737
parachordal cartilages
Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.
ZFA:0000377
TAO:0001424
chondocranium
zebrafish_anatomy
neurocranium
ZFA:0001424
chondrocranium
Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0001425
basal plate cartilages
zebrafish_anatomy
ZFA:0001425
basal plate cartilage
basal plate cartilages
Nares that form at 40-44dpf that open to the posterior region of the olfactory pit allowing water to exit the pit.
TAO:0001426
excurrent nostril
posterior nares
zebrafish_anatomy
ZFA:0001426
posterior naris
Nares that form at 40-44dpf that open to the posterior region of the olfactory pit allowing water to exit the pit.
ZFIN:ZDB-PUB-961014-399
excurrent nostril
ZFIN:ZDB-PUB-961014-399
posterior nares
Nares that form at 40-44dpf that open to the anterior region of the olfactory pit allowing water to enter the pit.
TAO:0001427
anterior nares
incurrent nostril
zebrafish_anatomy
ZFA:0001427
anterior naris
Nares that form at 40-44dpf that open to the anterior region of the olfactory pit allowing water to enter the pit.
ZFIN:ZDB-PUB-961014-399
anterior nares
incurrent nostril
ZFIN:ZDB-PUB-961014-399
The highly folded olfactory epithelium.
TAO:0001428
olfactory rosettes
zebrafish_anatomy
ZFA:0001428
Olfactory epithelium may be part of olfactory rosette.
The epithelium exists before becoming folded into the rosette.
olfactory rosette
The highly folded olfactory epithelium.
GOC:mh
ISBN:9789812388216
ORCiD:0000-0001-9114-8737
olfactory rosettes
Ventral hindbrain nuclei just caudal to the interpeduncular nucleus.
TAO:0001429
median raphe nucleus
zebrafish_anatomy
ZFA:0001429
raphe nucleus
Ventral hindbrain nuclei just caudal to the interpeduncular nucleus.
ZFIN:ZDB-PUB-100202-7
median raphe nucleus
ZFIN:ZDB-PUB-100202-7
A duct connecting the esophagus to the posterior chamber of the swim bladder.
TAO:0001430
zebrafish_anatomy
ZFA:0001430
pneumatic duct
A duct connecting the esophagus to the posterior chamber of the swim bladder.
ZFIN:ZDB-PUB-060306-11
TAO:0001431
zebrafish_anatomy
ZFA:0001431
primitive olfactory epithelium
Sclerotic bone that is located anterior to the eye.
TAO:0001432
anterior sclerotic bones
zebrafish_anatomy
ZFA:0001432
anterior sclerotic bone
Sclerotic bone that is located anterior to the eye.
GOC:mh
ORCiD:0000-0001-9114-8737
anterior sclerotic bones
Sclerotic bone that is located posterior to the eye.
TAO:0001433
posterior sclerotic bones
zebrafish_anatomy
ZFA:0001433
posterior sclerotic bone
Sclerotic bone that is located posterior to the eye.
GOC:mh
ORCiD:0000-0001-9114-8737
posterior sclerotic bones
Floor plate that is part of the neural tube.
TAO:0001434
zebrafish_anatomy
ZFA:0001434
floor plate neural tube
Floor plate that is part of the neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of tissue on the side of the lumen of the neural tube.
TAO:0001435
zebrafish_anatomy
ZFA:0001435
lateral wall neural tube
Portion of tissue on the side of the lumen of the neural tube.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Roof plate that is part of the neural tube.
TAO:0001436
zebrafish_anatomy
ZFA:0001436
roof plate neural tube region
Roof plate that is part of the neural tube.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening.
TAO:0001437
zebrafish_anatomy
ZFA:0001437
ductus communicans
The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening.
ZFIN:ZDB-PUB-060306-11
Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities.
TAO:0001438
body cavity
zebrafish_anatomy
ZFA:0001438
coelom
Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.
CARO:0000011
TAO:0001439
anatomical systems
zebrafish_anatomy
ZFA:0001439
anatomical system
Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.
GOC:mh
ORCiD:0000-0001-9114-8737
anatomical systems
The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.
TAO:0001440
zebrafish_anatomy
ZFA:0001440
rhombic lip
The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.
GOC:cvs
ORCiD:0000-0002-2244-7917
Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus.
TAO:0001441
zebrafish_anatomy
ZFA:0001441
lower rhombic lip
Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary.
TAO:0001442
zebrafish_anatomy
ZFA:0001442
upper rhombic lip
Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary.
GOC:cvs
ORCiD:0000-0002-2244-7917
A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.
TAO:0001443
zebrafish_anatomy
ZFA:0001443
choroid plexus
A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.
GOC:cvs
ORCiD:0000-0002-2244-7917
Choroid plexus that is part of the third ventricle.
TAO:0001444
diencephalic choroid plexus
zebrafish_anatomy
ZFA:0001444
choroid plexus third ventricle
Choroid plexus that is part of the third ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Choroid plexus that is part of the tectal ventricle.
TAO:0001445
choroid plexus tectal ventricles
zebrafish_anatomy
ZFA:0001445
choroid plexus tectal ventricle
Choroid plexus that is part of the tectal ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
choroid plexus tectal ventricles
Choroid plexus that is part of the fourth ventricle.
TAO:0001446
zebrafish_anatomy
ZFA:0001446
choroid plexus fourth ventricle
Choroid plexus that is part of the fourth ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Choroid plexus that is part of the telencephalic ventricle.
TAO:0001447
zebrafish_anatomy
ZFA:0001447
choroid plexus telencephalic ventricle
Choroid plexus that is part of the telencephalic ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Glands that produce calcitonin. In adult fish the glands lie as two groups of follicles at the transverse septum close to the sinus venosus.
TAO:0001448
ultimobranchial bodies
zebrafish_anatomy
ZFA:0001448
ultimobranchial body
Glands that produce calcitonin. In adult fish the glands lie as two groups of follicles at the transverse septum close to the sinus venosus.
ZFIN:ZDB-PUB-060517-11
ultimobranchial bodies
Mesenchyme that is part of the pelvic fin.
TAO:0001449
mesenchyme pelvic fins
zebrafish_anatomy
ZFA:0001449
mesenchyme pelvic fin
Mesenchyme that is part of the pelvic fin.
GOC:mh
ORCiD:0000-0001-9114-8737
mesenchyme pelvic fins
Apical ectodermal ridge that is part of the pelvic fin.
TAO:0001450
apical ectodermal ridge pelvic fins
zebrafish_anatomy
ZFA:0001450
apical ectodermal ridge pelvic fin
Apical ectodermal ridge that is part of the pelvic fin.
GOC:mh
ORCiD:0000-0001-9114-8737
apical ectodermal ridge pelvic fins
A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud.
TAO:0001451
zebrafish_anatomy
ZPA
ZFA:0001451
zone of polarizing activity pectoral fin bud
A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud.
ZFIN:ZDB-PUB-060616-55
A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud.
TAO:0001452
zebrafish_anatomy
ZPA
ZFA:0001452
zone of polarizing activity pelvic fin bud
A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud.
ZFIN:ZDB-PUB-060616-55
Embryonic region that develops into the pectoral fin bud.
TAO:0001453
pectoral fin fields
zebrafish_anatomy
ZFA:0001453
pectoral fin field
Embryonic region that develops into the pectoral fin bud.
GOC:mh
ORCiD:0000-0001-9114-8737
pectoral fin fields
Portion of tissue in the pelvic region that develops into the pelvic fin bud.
TAO:0001454
pelvic fin fields
zebrafish_anatomy
ZFA:0001454
pelvic fin field
Portion of tissue in the pelvic region that develops into the pelvic fin bud.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic fin fields
The cartilage from which both the scapula and coracoid develop.
TAO:0001455
coraco-scapular cartilage
scapulo-coracoid cartilage
zebrafish_anatomy
ZFA:0001455
scapulocoracoid
The cartilage from which both the scapula and coracoid develop.
GOC:cvs
ORCiD:0000-0002-2244-7917
A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998).
TAO:0001456
fin plate cartilage
zebrafish_anatomy
ZFA:0001456
pectoral fin endoskeletal disc
A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998).
GOC:cvs
ORCiD:0000-0002-2244-7917
Cartilage which is part of the axial skeleton.
TAO:0001457
postcranial axial cartilages
zebrafish_anatomy
ZFA:0001457
postcranial axial cartilage
Cartilage which is part of the axial skeleton.
GOC:mh
ORCiD:0000-0001-9114-8737
postcranial axial cartilages
Cartilage which is part of the cranium.
TAO:0001458
cranial cartilages
zebrafish_anatomy
ZFA:0001458
cranial cartilage
Cartilage which is part of the cranium.
GOC:mh
ORCiD:0000-0001-9114-8737
cranial cartilages
Cartilage which is part of the pelvic fin.
TAO:0001459
pelvic fin cartilages
zebrafish_anatomy
ZFA:0001459
pelvic fin cartilage
Cartilage which is part of the pelvic fin.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic fin cartilages
TAO:0001460
pharyngeal arch cartilages
splanchnocranium cartilage
zebrafish_anatomy
ZFA:0001460
pharyngeal arch cartilage
pharyngeal arch cartilages
Cartilage that is part of the chondrocranium.
TAO:0001461
neurocranium cartilage
zebrafish_anatomy
ZFA:0001461
chondrocranium cartilage
Cartilage that is part of the chondrocranium.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anatomical surface separating somites.
TAO:0001462
somite border cell
zebrafish_anatomy
somite boundary
ZFA:0001462
somite border
Anatomical surface separating somites.
GOC:mh
ORCiD:0000-0001-9114-8737
somite border cell
Surface structure composed of an array of melanophores arranged in a stripe. Stripes are oriented from rostral to caudal.
TAO:0001463
melanophore stripes
zebrafish_anatomy
ZFA:0001463
melanophore stripe
Surface structure composed of an array of melanophores arranged in a stripe. Stripes are oriented from rostral to caudal.
GOC:cvs
ORCiD:0000-0002-2244-7917
melanophore stripes
The layer within the retina where the photoreceptor cell bodies reside.
TAO:0001464
retinal outer nuclear layers
zebrafish_anatomy
ZFA:0001464
retinal outer nuclear layer
The layer within the retina where the photoreceptor cell bodies reside.
GOC:mh
ORCiD:0000-0001-9114-8737
retinal outer nuclear layers
Layer of the retina composed of the inner segments of the photoreceptor cells.
TAO:0001465
photoreceptor inner segment layers
zebrafish_anatomy
ZFA:0001465
photoreceptor inner segment layer
Layer of the retina composed of the inner segments of the photoreceptor cells.
GOC:mh
ORCiD:0000-0001-9114-8737
photoreceptor inner segment layers
Layer of the retina composed of the outer segments of the photoreceptor cells. The photoreceptor outer segment is a specialized primary cilium consisting of a microtubule-based axoneme and regular stacks of membrane folds or disks containing the photopigments (opsins) required for the phototransduction cascade.
TAO:0001466
photoreceptor outer segment layers
zebrafish_anatomy
ZFA:0001466
photoreceptor outer segment layer
Layer of the retina composed of the outer segments of the photoreceptor cells. The photoreceptor outer segment is a specialized primary cilium consisting of a microtubule-based axoneme and regular stacks of membrane folds or disks containing the photopigments (opsins) required for the phototransduction cascade.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-110811-12
photoreceptor outer segment layers
TAO:0001467
zebrafish_anatomy
ZFA:0001467
pharyngeal mesoderm
The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.
TAO:0001468
zebrafish_anatomy
ZFA:0001468
anterior lateral line system
The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.
GOC:ymb
ORCiD:0000-0002-9900-7880
The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear.
TAO:0001469
lateral lines
zebrafish_anatomy
ZFA:0001469
lateral line
The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear.
DOI:10.1159/000115896
GOC:ymb
ORCiD:0000-0002-9900-7880
lateral lines
The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear.
TAO:0001470
anterior lateral lines
zebrafish_anatomy
ZFA:0001470
anterior lateral line
The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
anterior lateral lines
The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.
TAO:0001471
zebrafish_anatomy
ZFA:0001471
posterior lateral line system
The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.
GOC:ymb
ORCiD:0000-0002-9900-7880
Neuromast that is part of the anterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0001472
neuromast anterior
zebrafish_anatomy
ZFA:0001472
anterior lateral line neuromast
Neuromast that is part of the anterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres.
TAO:0001473
deep blastomeres
zebrafish_anatomy
ZFA:0001473
deep blastomere
Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres.
ZFIN:ZDB-PUB-961014-576
deep blastomeres
zebrafish_anatomy
ZFA:0001474
presumptive cardinal organ
true
zebrafish_anatomy
ZFA:0001475
presumptive organ
true
zebrafish_anatomy
ZFA:0001476
presumptive organ system
true
Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships.
CARO:0000043
TAO:0001477
zebrafish_anatomy
ZFA:0001477
portion of tissue
Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical group that has its parts adjacent to one another.
CARO:0000041
TAO:0001478
zebrafish_anatomy
ZFA:0001478
anatomical cluster
Anatomical group that has its parts adjacent to one another.
GOC:mh
ORCiD:0000-0001-9114-8737
Cranial nerves that carry afferent and efferent fibers for the lateral line system.
TAO:0001479
lateral line nerves
zebrafish_anatomy
ZFA:0001479
lateral line nerve
Cranial nerves that carry afferent and efferent fibers for the lateral line system.
GOC:ymb
ORCiD:0000-0002-9900-7880
lateral line nerves
Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts.
TAO:0001480
anterodorsal lateral line nerve
dorsal anterior lateral line nerves
zebrafish_anatomy
ZFA:0001480
dorsal anterior lateral line nerve
Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-000523-3
dorsal anterior lateral line nerves
Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts.
TAO:0001481
anteroventral lateral line nerve
ventral anterior lateral line nerves
zebrafish_anatomy
ZFA:0001481
ventral anterior lateral line nerve
Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts.
GOC:ymb
ORCiD:0000-0002-9900-7880
ventral anterior lateral line nerves
Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line.
TAO:0001482
middle lateral line nerves
zebrafish_anatomy
ZFA:0001482
middle lateral line nerve
Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line.
GOC:ymb
ORCiD:0000-0002-9900-7880
middle lateral line nerves
The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line.
TAO:0001483
middle lateral line ganglia
zebrafish_anatomy
ZFA:0001483
middle lateral line ganglion
The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line.
GOC:ymb
ORCiD:0000-0002-9900-7880
middle lateral line ganglia
Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres.
TAO:0001484
superficial blastomeres
zebrafish_anatomy
ZFA:0001484
superficial blastomere
Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres.
ZFIN:ZDB-PUB-961014-576
superficial blastomeres
Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue.
CARO:0000065
TAO:0001485
basal laminae
zebrafish_anatomy
ZFA:0001485
basal lamina
Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue.
GOC:cvs
ORCiD:0000-0002-2244-7917
basal laminae
Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.
CARO:0000066
TAO:0001486
zebrafish_anatomy
ZFA:0001486
epithelium
Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.
GOC:mh
ORCiD:0000-0001-9114-8737
Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.
CARO:0000004
TAO:0001487
zebrafish_anatomy
ZFA:0001487
portion of organism substance
Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types.
CARO:0000055
TAO:0001488
multi-tissue structures
zebrafish_anatomy
ZFA:0001488
multi-tissue structure
Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types.
GOC:mh
ORCiD:0000-0001-9114-8737
multi-tissue structures
Multi-tissue structure that is part of a compound organ.
CARO:0000019
TAO:0001489
compound organ components
zebrafish_anatomy
ZFA:0001489
compound organ component
Multi-tissue structure that is part of a compound organ.
GOC:mh
ORCiD:0000-0001-9114-8737
compound organ components
Compound organ that contains one or more macroscopic anatomical spaces.
CARO:0000072
TAO:0001490
cavitated compound organs
zebrafish_anatomy
ZFA:0001490
cavitated compound organ
Compound organ that contains one or more macroscopic anatomical spaces.
GOC:mh
ORCiD:0000-0001-9114-8737
cavitated compound organs
Compound organ that does not contain macroscopic anatomical spaces.
CARO:0000074
TAO:0001491
solid compound organs
zebrafish_anatomy
ZFA:0001491
solid compound organ
Compound organ that does not contain macroscopic anatomical spaces.
GOC:mh
ORCiD:0000-0001-9114-8737
solid compound organs
Multi-tissue structure that is not part of a compound organ.
CARO:0000021
TAO:0001492
simple organs
zebrafish_anatomy
ZFA:0001492
simple organ
Multi-tissue structure that is not part of a compound organ.
GOC:mh
ORCiD:0000-0001-9114-8737
simple organs
Epithelium that consists of epithelial cells not arranged in one or more layers.
CARO:0000071
TAO:0001493
atypical epithelia
zebrafish_anatomy
ZFA:0001493
atypical epithelium
Epithelium that consists of epithelial cells not arranged in one or more layers.
GOC:mh
ORCiD:0000-0001-9114-8737
atypical epithelia
Epithelium that consists of more than one layer of epithelial cells.
CARO:0000069
TAO:0001494
zebrafish_anatomy
ZFA:0001494
multilaminar epithelium
Epithelium that consists of more than one layer of epithelial cells.
GOC:mh
ORCiD:0000-0001-9114-8737
Epithelium that consists of a single layer of epithelial cells.
CARO:0000073
TAO:0001495
unilaminar epithelia
zebrafish_anatomy
ZFA:0001495
unilaminar epithelium
Epithelium that consists of a single layer of epithelial cells.
GOC:mh
ORCiD:0000-0001-9114-8737
unilaminar epithelia
Unilaminar epithelium that consists of a single layer of columnar cells.
CARO:0000068
TAO:0001496
simple columnar epithelia
zebrafish_anatomy
ZFA:0001496
simple columnar epithelium
Unilaminar epithelium that consists of a single layer of columnar cells.
GOC:mh
ORCiD:0000-0001-9114-8737
simple columnar epithelia
Unilaminar epithelium that consists of a single layer of cuboidal cells.
CARO:0000067
TAO:0001497
simple cuboidal epithelia
zebrafish_anatomy
ZFA:0001497
simple cuboidal epithelium
Unilaminar epithelium that consists of a single layer of cuboidal cells.
GOC:mh
ORCiD:0000-0001-9114-8737
simple cuboidal epithelia
Unilaminar epithelium that consists of a single layer of squamous cells.
CARO:0000070
TAO:0001498
simple squamous epithelia
zebrafish_anatomy
ZFA:0001498
simple squamous epithelium
Unilaminar epithelium that consists of a single layer of squamous cells.
GOC:mh
ORCiD:0000-0001-9114-8737
simple squamous epithelia
Simple columnar epithelium that lines the esophagus.
TAO:0001499
zebrafish_anatomy
ZFA:0001499
esophageal epithelium
Simple columnar epithelium that lines the esophagus.
ZFIN:ZDB-PUB-070426-1
Bilaterally paired cartilage encasing the semicircular canals of the inner ear.
TAO:0001500
otic capsule
zebrafish_anatomy
ZFA:0001500
auditory capsule
Bilaterally paired cartilage encasing the semicircular canals of the inner ear.
GOC:ymb
ORCiD:0000-0002-9900-7880
Skeletal element that is composed of cartilage tissue and may be permanent or transient.
TAO:0001501
VSAO:0000000
cartilages
zebrafish_anatomy
ZFA:0001501
cartilage element
Skeletal element that is composed of cartilage tissue and may be permanent or transient.
VSAO:curator
cartilages
Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar.
TAO:0001502
zebrafish_anatomy
ZFA:0001502
epiphyseal bar
Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar.
GOC:mh
ORCiD:0000-0001-9114-8737
Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anteriolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially.
TAO:0001503
laminas orbitonasalis
zebrafish_anatomy
ZFA:0001503
lamina orbitonasalis
Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anteriolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially.
GOC:mh
ORCiD:0000-0001-9114-8737
laminas orbitonasalis
Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf).
TAO:0001504
occipital arch cartilages
zebrafish_anatomy
ZFA:0001504
occipital arch cartilage
Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf).
GOC:mh
ORCiD:0000-0001-9114-8737
occipital arch cartilages
Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate.
TAO:0001505
taeniae marginales anterior
zebrafish_anatomy
orbital cartilage
ZFA:0001505
taenia marginalis anterior
Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate.
GOC:mh
ORCiD:0000-0001-9114-8737
taeniae marginales anterior
Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium.
TAO:0001506
zebrafish_anatomy
ZFA:0001506
tectum synoticum
Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium.
GOC:mh
ORCiD:0000-0001-9114-8737
Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra.
TAO:0001507
trabeculae cranii
zebrafish_anatomy
ZFA:0001507
trabecula cranii
Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra.
GOC:mh
ORCiD:0000-0001-9114-8737
trabeculae cranii
Cartilage formed via medial fusion between bilaterally paired trabecula cranii.
TAO:0001508
trabecular bar
zebrafish_anatomy
ZFA:0001508
trabecula communis
Cartilage formed via medial fusion between bilaterally paired trabecula cranii.
GOC:mh
ORCiD:0000-0001-9114-8737
Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye. It lies between t lies between the sclera and the optic choroid.
TAO:0001509
sclerotic cartilages
zebrafish_anatomy
scleral cartilage
ZFA:0001509
sclerotic cartilage
Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye. It lies between t lies between the sclera and the optic choroid.
ZFIN:ZDB-PUB-070629-20
sclerotic cartilages
Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. It chondrifies between the anterior tips of the ceratohyal cartilages, anterior to the first copula.
TAO:0001510
zebrafish_anatomy
basihyal
ZFA:0001510
basihyal cartilage
Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. It chondrifies between the anterior tips of the ceratohyal cartilages, anterior to the first copula.
GOC:mh
ORCiD:0000-0001-9114-8737
The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms.
ZFA:0000218
TAO:0001511
interhyal bone
stylohyal
zebrafish_anatomy
ZFA:0001511
interhyal cartilage
The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue.
ZFA:0001255
CARO:0000054
TAO:0001512
zebrafish_anatomy
ZFA:0001512
anatomical group
Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue.
GOC:mh
ORCiD:0000-0001-9114-8737
Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.
TAO:0001513
dermomyotomes
zebrafish_anatomy
ZFA:0001513
dermomyotome
Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-060124-14
dermomyotomes
Skeletal element that is composed of bone tissue.
TAO:0001514
VSAO:0000057
bones
zebrafish_anatomy
ZFA:0001514
bone element
Skeletal element that is composed of bone tissue.
VSAO:curator
bones
Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar.
TAO:0001515
taeniae marginales posterior
zebrafish_anatomy
orbital cartilage
ZFA:0001515
taenia marginalis posterior
Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar.
GOC:mh
ORCiD:0000-0001-9114-8737
taeniae marginales posterior
Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches.
TAO:0001516
ceratobranchial cartilages
zebrafish_anatomy
ZFA:0001516
ceratobranchial cartilage
Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches.
GOC:mh
ORCiD:0000-0001-9114-8737
ceratobranchial cartilages
Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone.
TAO:0001517
zebrafish_anatomy
ZFA:0001517
ceratobranchial 2 cartilage
Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone.
TAO:0001518
zebrafish_anatomy
ZFA:0001518
ceratobranchial 3 cartilage
Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone.
TAO:0001519
zebrafish_anatomy
ZFA:0001519
ceratobranchial 4 cartilage
Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone.
GOC:mh
ORCiD:0000-0001-9114-8737
Ceratobranchial cartilage that forms between hypobranchial 1 and epibranchial 1.
TAO:0001520
zebrafish_anatomy
ZFA:0001520
ceratobranchial 1 cartilage
Ceratobranchial cartilage that forms between hypobranchial 1 and epibranchial 1.
TAO:curator
Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage.
TAO:0001521
zebrafish_anatomy
ZFA:0001521
ceratobranchial 5 cartilage
Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage.
GOC:mh
ORCiD:0000-0001-9114-8737
Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages.
TAO:0001522
hypobranchial cartilages
zebrafish_anatomy
ZFA:0001522
hypobranchial cartilage
Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages.
GOC:mh
ORCiD:0000-0001-9114-8737
hypobranchial cartilages
Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4.
TAO:0001523
hypobranchial 4 cartilages
zebrafish_anatomy
ZFA:0001523
hypobranchial 4 cartilage
Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4.
GOC:mh
ORCiD:0000-0001-9114-8737
hypobranchial 4 cartilages
Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1.
TAO:0001524
hypobranchial 1 cartilages
zebrafish_anatomy
ZFA:0001524
hypobranchial 1 cartilage
Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1.
GOC:mh
ORCiD:0000-0001-9114-8737
hypobranchial 1 cartilages
Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1.
TAO:0001525
hypobranchial 2 cartilages
zebrafish_anatomy
ZFA:0001525
hypobranchial 2 cartilage
Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1.
GOC:mh
ORCiD:0000-0001-9114-8737
hypobranchial 2 cartilages
Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1.
TAO:0001526
hypobranchial 3 cartilages
zebrafish_anatomy
ZFA:0001526
hypobranchial 3 cartilage
Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1.
GOC:mh
ORCiD:0000-0001-9114-8737
hypobranchial 3 cartilages
Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone.
TAO:0001527
epibranchial cartilages
zebrafish_anatomy
ZFA:0001527
epibranchial cartilage
Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone.
TAO:curator
epibranchial cartilages
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and the medial end of pharyngobranchial 1.
TAO:0001528
zebrafish_anatomy
ZFA:0001528
epibranchial 1 cartilage
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and the medial end of pharyngobranchial 1.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and the medial end of pharyngobranchial 3.
TAO:0001529
zebrafish_anatomy
ZFA:0001529
epibranchial 3 cartilage
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and the medial end of pharyngobranchial 3.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and the medial end of pharyngobranchial 2.
TAO:0001530
zebrafish_anatomy
ZFA:0001530
epibranchial 2 cartilage
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and the medial end of pharyngobranchial 2.
GOC:mh
ORCiD:0000-0001-9114-8737
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and the medial end of pharyngobranchial 4.
TAO:0001531
zebrafish_anatomy
ZFA:0001531
epibranchial 4 cartilage
Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and the medial end of pharyngobranchial 4.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFA:0000317
zebrafish_anatomy
ZFA:0001532
axial bone
true
Paired cartilages that project medially from the medial tips of epibranchials.
TAO:0001533
pharyngobranchial cartilages
zebrafish_anatomy
ZFA:0001533
pharyngobranchial cartilage
Paired cartilages that project medially from the medial tips of epibranchials.
GOC:mh
ORCiD:0000-0001-9114-8737
pharyngobranchial cartilages
Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3.
TAO:0001534
pharyngobranchial 3 cartilages
zebrafish_anatomy
ZFA:0001534
pharyngobranchial 3 cartilage
Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3.
GOC:mh
ORCiD:0000-0001-9114-8737
pharyngobranchial 3 cartilages
TAO:0001535
median fin cartilages
zebrafish_anatomy
ZFA:0001535
median fin cartilage
median fin cartilages
Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2.
TAO:0001536
pharyngobranchial 2 cartilages
zebrafish_anatomy
ZFA:0001536
pharyngobranchial 2 cartilage
Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2.
GOC:mh
ORCiD:0000-0001-9114-8737
pharyngobranchial 2 cartilages
Cartilage that develops initially on the medial side of the coraco-scapular cartilage.
TAO:0001537
mesocorocoid cartilages
zebrafish_anatomy
ZFA:0001537
mesocoracoid cartilage
Cartilage that develops initially on the medial side of the coraco-scapular cartilage.
GOC:cvs
ORCiD:0000-0002-2244-7917
mesocorocoid cartilages
Small cartilage that forms at the posterior edge of the basipterygium.
TAO:0001538
pelvic radial cartilages
zebrafish_anatomy
ZFA:0001538
pelvic radial cartilage
Small cartilage that forms at the posterior edge of the basipterygium.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic radial cartilages
Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962).
TAO:0001539
basipterygium cartilages
zebrafish_anatomy
ZFA:0001539
basipterygium cartilage
Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962).
GOC:cvs
ORCiD:0000-0002-2244-7917
basipterygium cartilages
Small cartilage that forms at the posterior and medial edge of the basipterygium.
TAO:0001540
pelvic radials 3 cartilages
zebrafish_anatomy
ZFA:0001540
pelvic radial 3 cartilage
Small cartilage that forms at the posterior and medial edge of the basipterygium.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic radials 3 cartilages
Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2.
TAO:0001541
pelvic radials 2 cartilages
zebrafish_anatomy
ZFA:0001541
pelvic radial 2 cartilage
Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic radials 2 cartilages
Small cartilage that forms at the posterior and lateral edge of the basipterygium.
TAO:0001542
pelvic radials 1 cartilages
zebrafish_anatomy
ZFA:0001542
pelvic radial 1 cartilage
Small cartilage that forms at the posterior and lateral edge of the basipterygium.
GOC:mh
ORCiD:0000-0001-9114-8737
pelvic radials 1 cartilages
Cartilage which is part of one of the paired fins.
TAO:0001543
paired fin cartilages
zebrafish_anatomy
ZFA:0001543
paired fin cartilage
Cartilage which is part of one of the paired fins.
GOC:mh
ORCiD:0000-0001-9114-8737
paired fin cartilages
ZFA:0001424
zebrafish_anatomy
ZFA:0001544
chondrocranium bone
true
ZFA:0000737
zebrafish_anatomy
ZFA:0001545
cranial bone
true
ZFA:0000095
ZFA:0001276
zebrafish_anatomy
ZFA:0001546
pharyngeal arch bone
true
ZFA:0000863
zebrafish_anatomy
ZFA:0001547
dermatocranium bone
true
ZFA:0001123
zebrafish_anatomy
ZFA:0001548
axial fin bone
true
ZFA:0000027
zebrafish_anatomy
ZFA:0001549
Zebrafish don't have a stomach.
paired fin bone
true
Lepidotrichium which is part of the caudal fin.
TAO:0001550
caudal fin lepidotrichia
caudal fin ray
zebrafish_anatomy
ZFA:0001550
caudal fin lepidotrichium
Lepidotrichium which is part of the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
caudal fin lepidotrichia
Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally.
TAO:0001551
pectoral fin lepidotrichia
pectoral fin ray
zebrafish_anatomy
ZFA:0001551
pectoral fin lepidotrichium
Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally.
GOC:cvs
ORCiD:0000-0002-2244-7917
pectoral fin lepidotrichia
Lepidotrichium which is part of the pelvic fin.
TAO:0001552
pelvic fin lepidotrichia
pelvic fin ray
zebrafish_anatomy
ZFA:0001552
pelvic fin lepidotrichium
Lepidotrichium which is part of the pelvic fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
pelvic fin lepidotrichia
ZFA:0000027
ZFA:0001123
zebrafish_anatomy
ZFA:0001553
fin bone
true
Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials.
TAO:0001554
fin ray
lepidotrichia
zebrafish_anatomy
ZFA:0001554
lepidotrichium
Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials.
ZFIN:ZDB-PUB-031103-13
lepidotrichia
Cranial ganglion which develops from an epibranchial placode.
TAO:0001555
epibranchial ganglia
zebrafish_anatomy
ZFA:0001555
epibranchial ganglion
Cranial ganglion which develops from an epibranchial placode.
GOC:mh
ORCiD:0000-0001-9114-8737
epibranchial ganglia
Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord.
TAO:0001556
paravertebral ganglion
zebrafish_anatomy
ZFA:0001556
sympathetic chain ganglion
Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord.
GOC:mh
ORCiD:0000-0001-9114-8737
Paired highly vascularized structures of the pronephros which are fused at the midline. Responsible for blood filtration and begins to function between 40 and 48hpf.
TAO:0001557
pronephric glomera
pronephric glomeruli
pronephric glomus
zebrafish_anatomy
ZFA:0001557
pronephric glomerulus
Paired highly vascularized structures of the pronephros which are fused at the midline. Responsible for blood filtration and begins to function between 40 and 48hpf.
ZFIN:ZDB-PUB-000606-4
pronephric glomeruli
Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts.
TAO:0001558
ciliated neck segment
zebrafish_anatomy
ZFA:0001558
pronephric tubule
Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts.
ZFIN:ZDB-PUB-000606-4
TAO:0001559
zebrafish_anatomy
ZFA:0001559
vertebral column
Ventral most hypural of the caudal fin. Supports the lower lobe of the caudal fin.
TAO:0001560
zebrafish_anatomy
ZFA:0001560
hypural 1
Ventral most hypural of the caudal fin. Supports the lower lobe of the caudal fin.
ZFIN:ZDB-PUB-031103-13
Hypural of the caudal fin dorsal to hypural 1. Supports the lower lobe of the caudal fin.
TAO:0001561
zebrafish_anatomy
ZFA:0001561
hypural 2
Hypural of the caudal fin dorsal to hypural 1. Supports the lower lobe of the caudal fin.
ZFIN:ZDB-PUB-031103-13
Hypural dorsal to hypural 2 that supports the upper lobe of the caudal fin.
TAO:0001562
zebrafish_anatomy
ZFA:0001562
hypural 3
Hypural dorsal to hypural 2 that supports the upper lobe of the caudal fin.
ZFIN:ZDB-PUB-031103-13
Hypural dorsal to hypural 3 that supports the upper lobe of the caudal fin.
TAO:0001563
zebrafish_anatomy
ZFA:0001563
hypural 4
Hypural dorsal to hypural 3 that supports the upper lobe of the caudal fin.
ZFIN:ZDB-PUB-031103-13
Dorsal-most hypural, that supports the upper lobe of the caudal fin.
TAO:0001564
zebrafish_anatomy
ZFA:0001564
hypural 5
Dorsal-most hypural, that supports the upper lobe of the caudal fin.
ZFIN:ZDB-PUB-031103-13
Oocyte part of stage II ovarian follicle. The stage II oocytes are characterized by the presence of cortical alveoli, a tripartite zona radiata (vitelline envelope), and a central germinal vesicle.
TAO:0001565
Stage 2 oocyte
cortical-alveolar oocyte
oocytes stage II
zebrafish_anatomy
previtellogenic oocyte
ZFA:0001565
In stage II (cortical alveolus stage), oocytes are distinguished by the appearance of variably sized cortical alveoli and the vitelline envelope becomes prominent, ZDB-PUB-961014-1020.
oocyte stage II
Oocyte part of stage II ovarian follicle. The stage II oocytes are characterized by the presence of cortical alveoli, a tripartite zona radiata (vitelline envelope), and a central germinal vesicle.
GOC:cvs
GOC:mh
ORCID:0000-0002-2244-7917
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-140513-387
oocytes stage II
previtellogenic oocyte
ZFIN:ZDB-PUB-140513-387
Oocyte part of stage III ovarian follicle. Stage III oocytes contain internal vitellus droplets and peripheral yolk vesicles.
TAO:0001566
Stage 3 oocyte
oocytes stage III
vitellogenic oocytes
zebrafish_anatomy
postvitellogenic oocyte
ZFA:0001566
In stage III (vitellogenesis), yolk proteins appear in oocytes and yolk bodies with crystalline yolk accrue during this major growth stage. Oocytes develop the capacity to respond in vitro to the steroid 17, 20-dihydroxy-4-pregnen-3-one (DHP) by undergoing oocyte maturation ZDB-PUB-961014-1020.
oocyte stage III
Oocyte part of stage III ovarian follicle. Stage III oocytes contain internal vitellus droplets and peripheral yolk vesicles.
GOC:CVS
GOC:mh
ORCID:0000-0002-2244-7917
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-140513-387
oocytes stage III
postvitellogenic oocyte
ZFIN:ZDB-PUB-140513-387
Oocyte part of stage I ovarian follicle. Stage I oocytes are basophilic, and have relatively large nuclei.
TAO:0001567
Stage 1 oocyte
oocytes stage I
primary oocyte
zebrafish_anatomy
previtellogenic oocyte
ZFA:0001567
Oocytes reside in nests with other oocytes (Stage IA) and then within a definitive follicle (Stage IB), where they greatly increase in size ZDB-PUB-961014-1020.
oocyte stage I
Oocyte part of stage I ovarian follicle. Stage I oocytes are basophilic, and have relatively large nuclei.
GOC:cvs
GOC:mh
ORCID:0000-0002-2244-7917
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-140513-387
oocytes stage I
previtellogenic oocyte
ZFIN:ZDB-PUB-140513-387
Oocyte part of stage IV ovarian follicle. Stage IV oocytes are large and filled with noncrystalline yolky bodies.
TAO:0001568
Stage 4 oocyte
mature oocytes
oocytes stage IV
zebrafish_anatomy
postvitellogenic oocyte
ZFA:0001568
In stage IV (oocyte maturation), oocytes increase slightly in size, become translucent, and their yolk becomes non-crystalline as they undergo final meiotic maturation in vivo (and in response to DHP in vitro). ZDB-PUB-961014-1020.
oocyte stage IV
Oocyte part of stage IV ovarian follicle. Stage IV oocytes are large and filled with noncrystalline yolky bodies.
GOC:CVS
GOC:mh
ORCID:0000-0002-2244-7917
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-140513-387
oocytes stage IV
postvitellogenic oocyte
ZFIN:ZDB-PUB-140513-387
Oocyte part of stage V ovarian follicle.
TAO:0001569
mature egg
unactivated egg
zebrafish_anatomy
ZFA:0001569
In stage V (mature egg), eggs (approx. 0.75 mm) are ovulated into the ovarian lumen and are capable of fertilization ZDB-PUB-961014-1020.
oocyte stage V
Oocyte part of stage V ovarian follicle.
GOC:mh
ORCiD:0000-0001-9114-8737
A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization. In zebrafish specified to be outside the body.
CL:0000025
TAO:0001570
activated oocyte
egg
zebrafish_anatomy
ZFA:0001570
Outside the body.
unfertilized egg
A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization. In zebrafish specified to be outside the body.
ISBN:0721662544
A follicle that has undergone ovulation and no longer contains an oocyte.
TAO:0001571
postovulatory follicles
zebrafish_anatomy
ZFA:0001571
postovulatory follicle
A follicle that has undergone ovulation and no longer contains an oocyte.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
postovulatory follicles
Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain.
TAO:0001572
superior sympathetic cervical ganglion
zebrafish_anatomy
SCG
ZFA:0001572
superior cervical ganglion
Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain.
GOC:mh
ORCiD:0000-0001-9114-8737
Ganglion which is located in the trunk.
TAO:0001573
trunk ganglia
zebrafish_anatomy
ZFA:0001573
trunk ganglion
Ganglion which is located in the trunk.
GOC:mh
ORCiD:0000-0001-9114-8737
trunk ganglia
Nervous system that innervates smooth muscle, cardiac muscle and glands. Regulates involuntary process such as blood circulation and digestion. Has subdivisions sympathetic nervous system and parasympathetic nervous system.
TAO:0001574
ANS
zebrafish_anatomy
ZFA:0001574
autonomic nervous system
Nervous system that innervates smooth muscle, cardiac muscle and glands. Regulates involuntary process such as blood circulation and digestion. Has subdivisions sympathetic nervous system and parasympathetic nervous system.
GOC:cvs
GOC:ymb
ISBN:0314472304
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Autonomic nervous system where the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic.
TAO:0001575
zebrafish_anatomy
ZFA:0001575
parasympathetic nervous system
Autonomic nervous system where the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic.
GOC:GOC
GOC:ymb
ISBN:0080923437
ORCiD:0000-0002-9900-7880
Autonomic nervous system that originates beginning at the thoracic and lumbar areas of the spinal cord. Sympathetic neurons are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides.
TAO:0001576
zebrafish_anatomy
ZFA:0001576
sympathetic nervous system
Autonomic nervous system that originates beginning at the thoracic and lumbar areas of the spinal cord. Sympathetic neurons are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides.
GOC:cvs
GOC:ymb
ISBN:0080923437
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Process of the premaxilla that extends posteriorly and overlays the mesethmoid.
TAO:0001577
premaxilla ascending processes
zebrafish_anatomy
ZFA:0001577
premaxilla ascending process
Process of the premaxilla that extends posteriorly and overlays the mesethmoid.
GOC:ymb
ORCiD:0000-0002-9900-7880
premaxilla ascending processes
In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts.
TAO:0001578
anterior dorsomedial process of autopalatines
zebrafish_anatomy
ZFA:0001578
anterior dorsomedial process of autopalatine
In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
anterior dorsomedial process of autopalatines
Ural vertebra that is the second vertebra posterior to preural centrum 1.
TAO:0001579
zebrafish_anatomy
ZFA:0001579
ural vertebra 2
Ural vertebra that is the second vertebra posterior to preural centrum 1.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical cluster that is the regional skeletal system surrounding the brain.
TAO:0001580
braincase
zebrafish_anatomy
ZFA:0001580
neurocranium
Anatomical cluster that is the regional skeletal system surrounding the brain.
GOC:mh
ORCiD:0000-0001-9114-8737
A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone.
TAO:0001581
zebrafish_anatomy
ZFA:0001581
ural centrum 2
A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone.
TAO:curator
Precaudal vertebra that is not a Weberian vertebra. Vertebra 5 through 14.
TAO:0001582
non-Weberian precaudal vertebrae
zebrafish_anatomy
ZFA:0001582
non-Weberian precaudal vertebra
Precaudal vertebra that is not a Weberian vertebra. Vertebra 5 through 14.
GOC:mh
ORCiD:0000-0001-9114-8737
non-Weberian precaudal vertebrae
Vertebra which is the fused centra of preural 1 and ural 1. These elements do not develop independently in zebrafish.
TAO:0001583
zebrafish_anatomy
urostyle
ZFA:0001583
preural centrum 1+ ural centrum 1
Vertebra which is the fused centra of preural 1 and ural 1. These elements do not develop independently in zebrafish.
ZFIN:ZDB-PUB-031103-13
Caudal fin lepidotrichium that is located anterior to the principal caudal fin rays. Caudal procurrent rays are unbranched.
TAO:0001584
caudal procurrent lepidotrichium
zebrafish_anatomy
caudal procurrent ray
ZFA:0001584
caudal fin procurrent ray
Caudal fin lepidotrichium that is located anterior to the principal caudal fin rays. Caudal procurrent rays are unbranched.
GOC:cvs
ORCiD:0000-0002-2244-7917
Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented and branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone. There are 19 principal caudal rays, with 10 in the dorsal lobe and nine in the ventral lobe. The dorsal lobe rays articulate with hypurals 3-5.
TAO:0001585
caudal principal lepidotrichium
caudal principal ray
zebrafish_anatomy
ZFA:0001585
caudal fin principal ray
Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented and branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone. There are 19 principal caudal rays, with 10 in the dorsal lobe and nine in the ventral lobe. The dorsal lobe rays articulate with hypurals 3-5.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle.
TAO:0001586
pectoral fin radials
zebrafish_anatomy
ZFA:0001586
pectoral fin radial
Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle.
TAO:curator
pectoral fin radials
Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid).
TAO:0001587
zebrafish_anatomy
ZFA:0001587
pectoral fin proximal radial
Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid).
TAO:curator
Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired.
TAO:0001588
pectoral fin distal radials
zebrafish_anatomy
ZFA:0001588
pectoral fin distal radial
Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired.
TAO:curator
pectoral fin distal radials
The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula.
TAO:0001589
propterygia
zebrafish_anatomy
ZFA:0001589
propterygium
The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula.
TAO:Curator
propterygia
Intramembranous bone that forms superficially in the organism. Dermal bones develop from the direct differentiation of mesenchymal cells into osteoblasts.
TAO:0001590
dermal bones
zebrafish_anatomy
ZFA:0001590
dermal bone
Intramembranous bone that forms superficially in the organism. Dermal bones develop from the direct differentiation of mesenchymal cells into osteoblasts.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-120529-44
dermal bones
Replacement bone that forms within cartilage.
TAO:0001591
endochondral bones
zebrafish_anatomy
ZFA:0001591
endochondral bone
Replacement bone that forms within cartilage.
GOC:mh
ORCiD:0000-0001-9114-8737
endochondral bones
Bone that is bilaterally paired endochondral bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts.
TAO:0001592
zebrafish_anatomy
ZFA:0001592
claustrum bone
Bone that is bilaterally paired endochondral bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts.
GOC:mh
ORCiD:0000-0001-9114-8737
An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate.
TAO:0000224
quadrate ventral processes
zebrafish_anatomy
ZFA:0001593
quadrate ventral process
An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate.
GOC:ymb
ORCiD:0000-0002-9900-7880
quadrate ventral processes
A dermal bone that is the lower, horizontal portion of the preopercle bone.
TAO:0000289
preopercle anterior arm
preopercle horizontal arm
preopercle lower limb
preopercle ventral arm
zebrafish_anatomy
ZFA:0001594
preopercle horizontal limb
A dermal bone that is the lower, horizontal portion of the preopercle bone.
GOC:mh
ORCiD:0000-0001-9114-8737
preopercle anterior arm
ZFIN:ZDB-PUB-961014-192
preopercle ventral arm
ZFIN:ZDB-PUB-961014-192
A dermal bone that is the upper, vertical portion of the preopercle bone.
TAO:0000336
preopercle dorsal arm
preopercle posterior arm
preopercle upper limb
preopercle vertical arm
zebrafish_anatomy
ZFA:0001595
preopercle vertical limb
A dermal bone that is the upper, vertical portion of the preopercle bone.
GOC:mh
ORCiD:0000-0001-9114-8737
preopercle dorsal arm
ZFIN:ZDB-PUB-961014-192.
preopercle posterior arm
ZFIN:ZDB-PUB-961014-192.
Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.
TAO:0000367
joints
zebrafish_anatomy
ZFA:0001596
joint
Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.
GOC:cvs
ORCiD:0000-0002-2244-7917
joints
Endochondral bone which is the posteroventral region of the exoccipital bone.
TAO:0000348
exoccipitals posteroventral regions
zebrafish_anatomy
ZFA:0001597
exoccipital posteroventral region
Endochondral bone which is the posteroventral region of the exoccipital bone.
GOC:mh
ORCiD:0000-0001-9114-8737
exoccipitals posteroventral regions
Endochondral bone which is the posterodorsal region of the basioccipital bone.
TAO:0000337
zebrafish_anatomy
ZFA:0001598
basioccipital posterodorsal region
Endochondral bone which is the posterodorsal region of the basioccipital bone.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0002214
zebrafish_anatomy
ZFA:0001599
os suspensorium medial flange
Neural spine that is located on the fourth vertebra.
TAO:0001546
zebrafish_anatomy
ZFA:0001600
neural spine 4
Neural spine that is located on the fourth vertebra.
GOC:mh
ORCiD:0000-0001-9114-8737
Anterior branch of the intercalarium. The manubrium develops as a simple antero-lateral membrane bone extension from basidorsal 2.
TAO:0001553
anterior process of the intercalarium
horizontal process
manubrium incudus
zebrafish_anatomy
anterior branch of the intercalarium
ZFA:0001601
manubrium
Anterior branch of the intercalarium. The manubrium develops as a simple antero-lateral membrane bone extension from basidorsal 2.
ZFIN:ZDB-PUB-031103-13
Bony process that develops as a dorsally projecting cartilaginous extension from the basidorsal. The ascending process is longer relative to the manubrium in larvae (5.1-11.0 mm). By 13.0 mm, the ascending process appears highly reduced in size.
TAO:0001548
zebrafish_anatomy
ZFA:0001602
intercalarium ascending process
Bony process that develops as a dorsally projecting cartilaginous extension from the basidorsal. The ascending process is longer relative to the manubrium in larvae (5.1-11.0 mm). By 13.0 mm, the ascending process appears highly reduced in size.
ZFIN:ZDB-PUB-031103-13
Portion of the intercalarium that ossifies from the cartilage condensation and articulates with a groove in centrum 2.
TAO:0001549
zebrafish_anatomy
articular process
ZFA:0001603
intercalarium articulating process
Portion of the intercalarium that ossifies from the cartilage condensation and articulates with a groove in centrum 2.
ZFIN:ZDB-PUB-031103-13
Surface structure that is the dorsal portion of the caudal fin.
TAO:0001593
caudal fin dorsal lobe
zebrafish_anatomy
ZFA:0001604
caudal fin upper lobe
Surface structure that is the dorsal portion of the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Surface structure that is the ventral portion of the caudal fin.
TAO:0001594
caudal fin ventral lobe
zebrafish_anatomy
ZFA:0001605
caudal fin lower lobe
Surface structure that is the ventral portion of the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0001598
branchial arch 1
gill arch 1
visceral arch 3
zebrafish_anatomy
ZFA:0001606
pharyngeal arch 3
TAO:0001599
branchial arch 2
gill arch 2
visceral arch 4
zebrafish_anatomy
ZFA:0001607
pharyngeal arch 4
TAO:0001600
branchial arch 3
gill arch 3
visceral arch 5
zebrafish_anatomy
ZFA:0001608
pharyngeal arch 5
TAO:0001601
branchial arch 4
gill arch 4
visceral arch 6
zebrafish_anatomy
ZFA:0001609
pharyngeal arch 6
TAO:0001602
branchial arch 5
gill arch 5
visceral arch 7
zebrafish_anatomy
ZFA:0001610
pharyngeal arch 7
The second pharyngeal arch, also known as the hyoid arch, forms jaw support structures. Anteriorly positioned cranial neural crest cells, which align with rhombomeres 4/5, contribute to the hyoid arch structures including the ceratohyal and hyosymplectic cartilages.
TAO:0001596
hyoid arch
visceral arch 2
zebrafish_anatomy
ZFA:0001611
pharyngeal arch 2
The second pharyngeal arch, also known as the hyoid arch, forms jaw support structures. Anteriorly positioned cranial neural crest cells, which align with rhombomeres 4/5, contribute to the hyoid arch structures including the ceratohyal and hyosymplectic cartilages.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020904-6
ZFIN:ZDB-PUB-040726-7
ZFIN:ZDB-PUB-961014-985
The first pharyngeal arch, also known as the mandibular arch, forms the jaw. The first pharyngeal arch gives rise to elements of the jaw, with the most anteriorly positioned cranial neural crest cells contributing to mandibular arch structures, including Meckel's and palatoquadrate cartilages that constitute the lower and upper jaw respectively.
TAO:0001595
mandibular arch
visceral arch 1
zebrafish_anatomy
ZFA:0001612
pharyngeal arch 1
The first pharyngeal arch, also known as the mandibular arch, forms the jaw. The first pharyngeal arch gives rise to elements of the jaw, with the most anteriorly positioned cranial neural crest cells contributing to mandibular arch structures, including Meckel's and palatoquadrate cartilages that constitute the lower and upper jaw respectively.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020904-6
ZFIN:ZDB-PUB-121120-12
ZFIN:ZDB-PUB-961014-985
ZFA:0000515
ZFA:0000625
TAO:0000625
TAO:0001597
branchial arch
branchial arches
branchial bar
branchial bars
gill arch
gill arches 1-5
visceral arches 3-7
zebrafish_anatomy
ZFA:0001613
pharyngeal arch 3-7
branchial arches
branchial bars
Endocardium that is part of the atrium.
TAO:0002169
zebrafish_anatomy
ZFA:0001614
atrial endocardium
Endocardium that is part of the atrium.
GOC:cvs
ORCiD:0000-0002-2244-7917
Endocardium that is part of the cardiac ventricle.
TAO:0002247
zebrafish_anatomy
ZFA:0001615
ventricular endocardium
Endocardium that is part of the cardiac ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Endocardium that is part of the atrioventricular canal.
TAO:0002170
zebrafish_anatomy
ZFA:0001616
atrioventricular canal endocardium
Endocardium that is part of the atrioventricular canal.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of organism substance composed of calcium carbonate located in the otolith organ and positioned over a sensory macula; two form in each vesicle during the late segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/oto/otolith.html'>otolith</a> by T. Whitfield.)
ZFA:0000139
TAO:0001621
statolith
zebrafish_anatomy
immature otolith
immature otoliths
ZFA:0001617
otolith
Portion of organism substance composed of calcium carbonate located in the otolith organ and positioned over a sensory macula; two form in each vesicle during the late segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/oto/otolith.html'>otolith</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
immature otoliths
zebrafish_anatomy
ZFA:0001618
pons
true
Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve.
TAO:0002212
nerve fiber layer
optic fiber layers
zebrafish_anatomy
ZFA:0001619
optic fiber layer
Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-000126-5
optic fiber layers
Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007).
TAO:0002238
PCT
zebrafish_anatomy
ZFA:0001620
pronephric proximal convoluted tubule
Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007).
ZFIN:ZDB-PUB-071029-9
Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule.
TAO:0002239
proximal straight tubules
zebrafish_anatomy
ZFA:0001621
pronephric proximal straight tubule
Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule.
ZFIN:ZDB-PUB-071029-9
proximal straight tubules
Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal straight tubule.
TAO:0002236
pronephric distal early tubules
zebrafish_anatomy
ZFA:0001622
pronephric distal early tubule
Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal straight tubule.
ZFIN:ZDB-PUB-071029-9
pronephric distal early tubules
Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening.
TAO:0002225
posterior pronephric ducts
zebrafish_anatomy
ZFA:0001623
posterior pronephric duct
Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening.
ZFIN:ZDB-PUB-071029-9
posterior pronephric ducts
Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule.
distal late tubules
zebrafish_anatomy
ZFA:0001624
pronephric distal late tubule
Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule.
ZFIN:ZDB-PUB-071029-9
distal late tubules
Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye.
TAO:0002213
optic nerve heads
zebrafish_anatomy
ZFA:0001625
optic nerve head
Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye.
GOC:mh
ORCiD:0000-0001-9114-8737
optic nerve heads
Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.
TAO:0002184
CSF
zebrafish_anatomy
ZFA:0001626
cerebral spinal fluid
Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena.
TAO:0001620
lagenar capsules
zebrafish_anatomy
ZFA:0001627
lagenar capsule
Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena.
GOC:ymb
ORCiD:0000-0002-9900-7880
lagenar capsules
Bone that forms as a replacement of another structural tissue.
TAO:0001637
replacement bones
zebrafish_anatomy
ZFA:0001628
replacement bone
Bone that forms as a replacement of another structural tissue.
GOC:mh
ORCiD:0000-0001-9114-8737
replacement bones
Replacement bone that forms within the connective tissue surrounding the notochord.
TAO:0001639
perichordal bones
zebrafish_anatomy
ZFA:0001629
perichordal bone
Replacement bone that forms within the connective tissue surrounding the notochord.
GOC:mh
ORCiD:0000-0001-9114-8737
perichordal bones
Replacement bone that forms within the connective tissue surrounding cartilage.
TAO:0001638
perichondral bones
zebrafish_anatomy
ZFA:0001630
perichondral bone
Replacement bone that forms within the connective tissue surrounding cartilage.
GOC:mh
ORCiD:0000-0001-9114-8737
perichondral bones
Perichordal bone that surrounds the anterior tip of the notochord.
TAO:0001640
zebrafish_anatomy
ZFA:0001631
notochordal ossification
Perichordal bone that surrounds the anterior tip of the notochord.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.
TAO:0001641
VSAO:0000017
zebrafish_anatomy
ZFA:0001632
portion of connective tissue
Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of connective tissue which surrounds the notochord.
TAO:0001642
zebrafish_anatomy
ZFA:0001633
perichordal connective tissue
Portion of connective tissue which surrounds the notochord.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of connective tissue which surrounds cartilage.
TAO:0001643
cartilage connective tissue
zebrafish_anatomy
ZFA:0001634
perichondrium
Portion of connective tissue which surrounds cartilage.
GOC:mh
ORCiD:0000-0001-9114-8737
Bone that forms directly within mesenchyme, and does not replace other tissues.
TAO:0001644
intramembranous bones
zebrafish_anatomy
ZFA:0001635
intramembranous bone
Bone that forms directly within mesenchyme, and does not replace other tissues.
GOC:mh
ORCiD:0000-0001-9114-8737
intramembranous bones
Intramembranous bone that forms deep in the organism.
TAO:0001645
membrane bones
zebrafish_anatomy
ZFA:0001636
membrane bone
Intramembranous bone that forms deep in the organism.
GOC:mh
ORCiD:0000-0001-9114-8737
membrane bones
Portion of connective tissue that is an extension of a bone.
TAO:0001646
TAO:0001834
bony projections
process
zebrafish_anatomy
ZFA:0001637
bony projection
Portion of connective tissue that is an extension of a bone.
GOC:cvs
ORCiD:0000-0002-2244-7917
bony projections
process
TAO:0001834
TAO:0002243
cochlear nucleus
octaval nucleus
vestibulocochlear nucleus
zebrafish_anatomy
ZFA:0001638
statoacoustic (VIII) nucleus
Simple squamous epithelium which lines blood and lymphatic vessels and the heart.
TAO:0002171
endothelia
zebrafish_anatomy
ZFA:0001639
vascular endothelium
Simple squamous epithelium which lines blood and lymphatic vessels and the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
endothelia
Ventral bend in the brain occurring caudal to the adenohypophyseal placode.
TAO:0002181
ventral flexure
zebrafish_anatomy
ZFA:0001640
cephalic flexure
Ventral bend in the brain occurring caudal to the adenohypophyseal placode.
GOC:cvs
ORCiD:0000-0002-2244-7917
Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002.
TAO:0001666
zebrafish_anatomy
ZFA:0001641
rudimentary neural arch
Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical cluster consisting of adjacent teeth constituting a row.
TAO:0001667
tooth rows
zebrafish_anatomy
ZFA:0001642
tooth row
Anatomical cluster consisting of adjacent teeth constituting a row.
GOC:mh
ORCiD:0000-0001-9114-8737
tooth rows
Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.
CARO:0000005
TAO:0001668
anatomical spaces
zebrafish_anatomy
ZFA:0001643
Part_of parents of these terms should be changed to be located_in rather then part_of when we get the appropriate relation.
anatomical space
Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.
GOC:mh
ORCiD:0000-0001-9114-8737
anatomical spaces
Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone.
TAO:0001670
articular cartilages
zebrafish_anatomy
ZFA:0001644
articular cartilage
Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
articular cartilages
Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone.
TAO:0001669
angular bones
zebrafish_anatomy
ZFA:0001645
angular bone
Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone.
TAO:curator
angular bones
Internal skeletal supports of the anal fin.
TAO:0001671
anal fin radials
zebrafish_anatomy
anal fin pterygiophores
ZFA:0001646
anal fin radial
Internal skeletal supports of the anal fin.
TAO:curator
anal fin radials
Internal skeletal supports of the dorsal fin.
TAO:0001672
dorsal fin radials
zebrafish_anatomy
dorsal fin pterygiophore
ZFA:0001647
dorsal fin radial
Internal skeletal supports of the dorsal fin.
TAO:curator
dorsal fin radials
Neural crest that migrates into the pharyngeal arches and heart, forming connective tissue that separates the vessels of the heart.
TAO:0002173
zebrafish_anatomy
ZFA:0001648
cardiac neural crest
Neural crest that migrates into the pharyngeal arches and heart, forming connective tissue that separates the vessels of the heart.
GOC:ymb
ORCiD:0000-0002-9900-7880
Anatomical cluster that is the series of dermal bones associated with the infraorbital sensory canal located under and posterior to the eye.
TAO:0001709
circumorbital series
zebrafish_anatomy
ZFA:0001649
infraorbital series
Anatomical cluster that is the series of dermal bones associated with the infraorbital sensory canal located under and posterior to the eye.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0002172
gill mesenchyme
zebrafish_anatomy
ZFA:0001650
branchial mesenchyme
Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape. The muscle is innervated by the occipitospinals and mainly composed of fast twitch muscle fibers.
ZFA:0000283
TAO:0000283
TAO:0002200
hypobranchial muscle
sternohyoideus
sternohyoids
zebrafish_anatomy
ZFA:0001651
sternohyoid
Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape. The muscle is innervated by the occipitospinals and mainly composed of fast twitch muscle fibers.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-080306-33
ZFIN:ZDB-PUB-190427-4
ZFIN:ZDB-PUB-970819-13
Muscle which is part of the head.
TAO:0002198
cephalic muscle
zebrafish_anatomy
cranial muscle
ZFA:0001652
head muscle
Muscle which is part of the head.
GOC:mh
ORCiD:0000-0001-9114-8737
Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium.
TAO:0002221
zebrafish_anatomy
ZFA:0001653
pericardial muscle
Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-001026-2
Anatomical space which is located beneath the operculum and external to the gills.
TAO:0002154
zebrafish_anatomy
ZFA:0001654
opercular cavity
Anatomical space which is located beneath the operculum and external to the gills.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical space in which the heart is located and is surrounded by the pericardium.
TAO:0002220
thoracic cavity
zebrafish_anatomy
ZFA:0001655
pericardial cavity
Anatomical space in which the heart is located and is surrounded by the pericardium.
GOC:mh
ORCiD:0000-0001-9114-8737
Anatomical space which contains the abdominal viscera and swim bladder. Located posterior to the pericardial cavity, separated by the transverse septum. From Functional Anatomy of the Vertebrates, third edition.
TAO:0002224
visceral cavity
zebrafish_anatomy
coelom
coelomic cavity
ZFA:0001656
pleuroperitoneal cavity
Anatomical space which contains the abdominal viscera and swim bladder. Located posterior to the pericardial cavity, separated by the transverse septum. From Functional Anatomy of the Vertebrates, third edition.
GOC:cvs
ISBN:0030223695
ORCiD:0000-0002-2244-7917
CNS tract/commissure which extends between the telencephalon and diencephalon and lies along the dorsal edge of the optic stalk.
TAO:0002244
SOT
zebrafish_anatomy
ZFA:0001657
supraoptic tract
CNS tract/commissure which extends between the telencephalon and diencephalon and lies along the dorsal edge of the optic stalk.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-961014-719
ZFIN:ZDB-PUB-961014-955
Nucleus located within the hindbrain.
TAO:0002177
zebrafish_anatomy
ZFA:0001658
hindbrain nucleus
Nucleus located within the hindbrain.
GOC:mh
ORCiD:0000-0001-9114-8737
Brain nucleus part of the diencephalon.
TAO:0002191
zebrafish_anatomy
ZFA:0001659
diencephalic nucleus
Brain nucleus part of the diencephalon.
GOC:mh
ORCiD:0000-0001-9114-8737
TAO:0002178
zebrafish_anatomy
ZFA:0001660
telencephalic nucleus
true
Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
TAO:0002226
zebrafish_anatomy
ZFA:0001662
preglomerular nucleus
Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
The portion of tissue that is the initial segment of one of the cranial nerves leaving the central nervous system.
TAO:0002190
zebrafish_anatomy
ZFA:0001663
cranial nerve root
The portion of tissue that is the initial segment of one of the cranial nerves leaving the central nervous system.
http://en.wikipedia.org/wiki/Nerve_root
true
Nucleus located in the midbrain.
TAO:0002209
zebrafish_anatomy
ZFA:0001665
midbrain nucleus
Nucleus located in the midbrain.
GOC:mh
ORCiD:0000-0001-9114-8737
Telencephalic nucleus which is in contact with the median ependymal lining of the ventricle and consists of the dorsal, ventral, supracommissural and postcommissural nuclei of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0002222
zebrafish_anatomy
ZFA:0001666
periventricular nucleus of ventral telencephalon
Telencephalic nucleus which is in contact with the median ependymal lining of the ventricle and consists of the dorsal, ventral, supracommissural and postcommissural nuclei of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain.
TAO:0002179
zebrafish_anatomy
ZFA:0001667
peripheral nucleus of ventral telencephalon
Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
TAO:0002180
area ventralis telencephali, nucleus centralis
zebrafish_anatomy
ZFA:0001668
central nucleus of ventral telencephalon
Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain.
GOC:mh
ISBN:3764351209
ORCiD:0000-0001-9114-8737
Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells.
TAO:0002202
zebrafish_anatomy
ZFA:0001669
intermediate nucleus
Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells.
ZFIN:ZDB-PUB-001220-2
Portion of tissue that is the part of the notochord located in the caudal fin.
TAO:0001821
zebrafish_anatomy
ZFA:0001670
notochord posterior region
Portion of tissue that is the part of the notochord located in the caudal fin.
GOC:mh
ORCiD:0000-0001-9114-8737
Epithelium that is the primary epithelium of the developing inner ear and has anterior and posterior maculae as its parts. These maculae later move apart into distinct regions of epithelium.
TAO:0002206
zebrafish_anatomy
ZFA:0001671
macula communis
Epithelium that is the primary epithelium of the developing inner ear and has anterior and posterior maculae as its parts. These maculae later move apart into distinct regions of epithelium.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-383
Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals.
TAO:0002193
zebrafish_anatomy
dorsal bar
ZFA:0001672
dorsolateral septum
Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-383
Podocyte that is part of the pronephros.
TAO:0002237
zebrafish_anatomy
ZFA:0001673
pronephric podocyte
Podocyte that is part of the pronephros.
GOC:cvs
ORCiD:0000-0002-2244-7917
Podocyte that is part of the kidney (mesonephros).
TAO:0002208
zebrafish_anatomy
ZFA:0001674
mesonephric podocyte
Podocyte that is part of the kidney (mesonephros).
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of connective tissue that is a fibrous band connecting bones or cartilages or supporting an organ.
TAO:0001682
zebrafish_anatomy
ZFA:0001675
ligament
Portion of connective tissue that is a fibrous band connecting bones or cartilages or supporting an organ.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ligament that is in the eye and is located at the angle between the cornea and the iris.
TAO:0002141
zebrafish_anatomy
ZFA:0001676
annular ligament
Ligament that is in the eye and is located at the angle between the cornea and the iris.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070629-16
Floor plate that is part of the midbrain.
TAO:0002196
zebrafish_anatomy
ZFA:0001677
floor plate midbrain region
Floor plate that is part of the midbrain.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure that consists of the structures that develop into the retina and lens.
TAO:0002201
zebrafish_anatomy
ZFA:0001678
Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-090226-1 correct Dbxref ZDB-ANAT-090227-5.
immature eye
Multi-tissue structure that consists of the structures that develop into the retina and lens.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue that gives rise to the lens. The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24-26 hpf is accomplished in part by apoptosis, similar to mammals.
TAO:0002205
immature lens
lens mass
lens vesicle
zebrafish_anatomy
presumptive lens
ZFA:0001679
Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-090226-2 correct Dbxref ZDB-ANAT-090227-6.
solid lens vesicle
Portion of tissue that gives rise to the lens. The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24-26 hpf is accomplished in part by apoptosis, similar to mammals.
GOC:cvs
ORCiD:CVS
ZFIN:ZDB-PUB-050701-15
lens mass
ZFIN:ZDB-PUB-091023-49
lens vesicle
ZFIN:ZDB-PUB-050701-15
Diencephalic nucleus that is part of the preoptic area. From Neuroanatomy of the Zebrafish Brain.
Melissa Haendel
2009-03-23T01:16:53Z
TAO:0002219
zebrafish_anatomy
ZFA:0001680
parvocellular preoptic nucleus
Diencephalic nucleus that is part of the preoptic area. From Neuroanatomy of the Zebrafish Brain.
ISBN:3764351209
Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.
Melissa Haendel
2009-03-23T01:47:27Z
TAO:0002197
gray matter
zebrafish_anatomy
gray mater
ZFA:0001681
grey matter
Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.
GOC:mh
ORCiD:0000-0001-9114-8737
Multi-tissue structure comprised largely of myelinated axons.
Melissa Haendel
2009-03-23T01:50:38Z
ZFA:0000145
TAO:0000145
TAO:0002142
TAO:0002143
CNS tract/commissure
CNS white matter
zebrafish_anatomy
white mater
ZFA:0001682
white matter
Multi-tissue structure comprised largely of myelinated axons.
GOC:mh
ORCiD:0000-0001-9114-8737
Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.
Melissa Haendel
2009-03-23T02:11:11Z
TAO:0002187
zebrafish_anatomy
ZFA:0001683
corneal epithelium
Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-061010-3
Acellular anatomical structure that is the zone of condensed collagen fibers underneath the basement membrane of the corneal epithelium that overlays the corneal stroma layer.
Melissa Haendel
2009-03-23T02:11:47Z
TAO:0002155
anterior elastic lamina
zebrafish_anatomy
anterior limiting membrane
ZFA:0001684
Bowman's layer
Acellular anatomical structure that is the zone of condensed collagen fibers underneath the basement membrane of the corneal epithelium that overlays the corneal stroma layer.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-050701-15
ZFIN:ZDB-PUB-061010-3
Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue.
Melissa Haendel
2009-03-23T02:12:16Z
TAO:0002189
zebrafish_anatomy
ZFA:0001685
corneal stroma
Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-061010-3
Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.
Melissa Haendel
2009-03-23T02:12:32Z
TAO:0002157
posterior limiting membrane
zebrafish_anatomy
ZFA:0001686
Descemet's membrane
Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-050701-15
ZFIN:ZDB-PUB-061010-3
Epithelium that is the innermost layer of the cornea and is comprised of a monolayer of polygonal cells.
Melissa Haendel
2009-03-23T02:13:25Z
TAO:0002186
zebrafish_anatomy
ZFA:0001687
corneal endothelium
Epithelium that is the innermost layer of the cornea and is comprised of a monolayer of polygonal cells.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-061010-3
Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea.
Melissa Haendel
2009-03-23T04:36:20Z
TAO:0002188
zebrafish_anatomy
ZFA:0001688
corneal primordium
Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-061010-3
Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface.
Melissa Haendel
2009-04-30T02:46:34Z
CARO:0000008
TAO:0001837
zebrafish_anatomy
ZFA:0001689
anatomical line
Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface.
CARO:MAH
ORCiD:0000-0001-9114-8737
Anatomical structure that delineates a furrow or depression in an organ or tissue.
Melissa Haendel
2009-04-30T02:48:53Z
TAO:0001838
zebrafish_anatomy
ZFA:0001690
groove
Anatomical structure that delineates a furrow or depression in an organ or tissue.
GOC:mh
ORCiD:0000-0001-9114-8737
Granule cell that is part of the cerebellum.
Melissa Haendel
2009-04-30T03:18:48Z
CL:0001031
TAO:0002182
zebrafish_anatomy
ZFA:0001691
cerebellar granule cell
Granule cell that is part of the cerebellum.
CL:curator
CNS white matter that crosses the midline within the hindbrain.
Melissa Haendel
2009-06-18T12:33:21Z
TAO:0002199
zebrafish_anatomy
ZFA:0001692
hindbrain commissure
CNS white matter that crosses the midline within the hindbrain.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-090417-11
Replacement bone that forms within or surrounding a cartilaginous skeletal element.
Melissa Haendel
2009-07-29T11:34:33Z
zebrafish_anatomy
ZFA:0001693
chondral bone
Replacement bone that forms within or surrounding a cartilaginous skeletal element.
GOC:mh
ORCiD:0000-0001-9114-8737
Granule cell that is part of the olfactory bulb.
Melissa Haendel
2009-04-30T03:21:40Z
CL:0000626
TAO:0002211
zebrafish_anatomy
ZFA:0001694
olfactory granule cell
Granule cell that is part of the olfactory bulb.
CL:curator
Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhombomere 8.
Melissa Haendel
2009-08-04T10:42:49Z
TAO:0002192
dlX
zebrafish_anatomy
ZFA:0001695
dorsolateral motor nucleus of vagal nerve
Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhombomere 8.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090417-11
Motor nucleus of vagal nerve that is located within the medial portion of rhombomere 8.
Melissa Haendel
2009-08-04T10:45:00Z
TAO:0002207
mmX
zebrafish_anatomy
ZFA:0001696
medial motor nucleus of vagal nerve
Motor nucleus of vagal nerve that is located within the medial portion of rhombomere 8.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090417-11
Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites.
Melissa Haendel
2009-08-04T01:04:59Z
TAO:0002174
OLe
cranial nerve VIII motor nucleus
octaval nerve motor nuclei
zebrafish_anatomy
ZFA:0001697
octaval nerve motor nucleus
Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-061229-17
octaval nerve motor nuclei
Octaval nerve motor nucleus that is initially located within rhombomere 6.
Melissa Haendel
2009-08-04T01:21:34Z
TAO:0002175
REN
ROLE
rostral cranial nerve VIII motor nucleus
zebrafish_anatomy
rostral efferent nuclei
ZFA:0001698
rostral octaval nerve motor nucleus
Octaval nerve motor nucleus that is initially located within rhombomere 6.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-061229-17
REN
ZFIN:ZDB-PUB-061229-17
rostral efferent nuclei
ZFIN:ZDB-PUB-061229-17
Octaval nerve motor nucleus that is initially located within rhombomere 7.
Melissa Haendel
2009-08-04T01:24:26Z
TAO:0002176
CEN
RELL
rostral cranial nerve VIII motor nucleus
zebrafish_anatomy
caudal efferent nuclei
ZFA:0001699
caudal octaval nerve motor nucleus
Octaval nerve motor nucleus that is initially located within rhombomere 7.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-061229-17
CEN
ZFIN:ZDB-PUB-061229-17
caudal efferent nuclei
ZFIN:ZDB-PUB-061229-17
Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen).
Melissa Haendel
2009-08-05T12:54:11Z
TAO:0002245
zebrafish_anatomy
ZFA:0001700
tunica externa swim bladder
Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen).
http://www.briancoad.com/Dictionary/T.htm
Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen.
Melissa Haendel
2009-08-05T12:55:22Z
TAO:0002246
zebrafish_anatomy
ZFA:0001701
tunica interna swim bladder
Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen.
http://www.briancoad.com/Dictionary/T.htm
Proliferative region that is part of the developing fin fold or fin.
Melissa Haendel
2009-08-05T02:38:05Z
TAO:0002146
zebrafish_anatomy
ZFA:0001702
apical ectodermal ridge
Proliferative region that is part of the developing fin fold or fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium.
Melissa Haendel
2009-08-05T03:22:18Z
TAO:0002195
zebrafish_anatomy
ZFA:0001703
epidermal placode
Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium.
ZFIN:ZDB-PUB-081008-12
A portion of tissue that gives rise to the scale. At the initial stages the primordium is composed of an accumulation of fibroblast below the basil epidermis. As the primordium develops the epidermis over the fibroblast alters: the basal epidermal cells become cuboidal and narrow, the collagen matrix remodels and the hemidesmosomes disappear.
Melissa Haendel
2009-08-05T03:35:05Z
TAO:0002242
scale primordia
zebrafish_anatomy
scale placode
ZFA:0001704
scale primordium
A portion of tissue that gives rise to the scale. At the initial stages the primordium is composed of an accumulation of fibroblast below the basil epidermis. As the primordium develops the epidermis over the fibroblast alters: the basal epidermal cells become cuboidal and narrow, the collagen matrix remodels and the hemidesmosomes disappear.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-081008-12
scale primordia
Duct that is part of the inner ear and connects to the semicircular canals ending in the endolymphatic sac.
Melissa Haendel
2009-08-11T09:15:55Z
TAO:0002194
zebrafish_anatomy
ZFA:0001705
endolymphatic duct
Duct that is part of the inner ear and connects to the semicircular canals ending in the endolymphatic sac.
ZFIN:ZDB-PUB-090112-20
http://en.wikipedia.org/wiki/Endolymphatic_duct
Portion of tissue that is part of the corpus cerebelli and contains Purkinje cells.
Melissa Haendel
2009-08-11T09:41:06Z
TAO:0002240
zebrafish_anatomy
ZFA:0001706
Purkinje cell layer corpus cerebelli
Portion of tissue that is part of the corpus cerebelli and contains Purkinje cells.
ZFIN:ZDB-PUB-090422-9
Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.
Melissa Haendel
2009-08-13T01:39:24Z
TAO:0002156
zebrafish_anatomy
ZFA:0001707
brainstem
Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.
ISBN:3764351209
CNS white matter that is part of the cerebellum.
Melissa Haendel
2009-08-13T01:48:48Z
TAO:0002183
cerebellar tracts/commissures
zebrafish_anatomy
ZFA:0001708
cerebellar white matter
CNS white matter that is part of the cerebellum.
GOC:mh
ORCiD:0000-0001-9114-8737
cerebellar tracts/commissures
Portion of tissue that is part of the valvula cerebelli and contains Purkinje cells.
Melissa Haendel
2009-08-13T03:00:08Z
TAO:0002241
zebrafish_anatomy
ZFA:0001709
Purkinje cell layer valvula cerebelli
Portion of tissue that is part of the valvula cerebelli and contains Purkinje cells.
ZFIN:ZDB-PUB-090422-9
Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer.
Melissa Haendel
2009-08-13T03:02:35Z
TAO:0002210
mossy fibers
zebrafish_anatomy
ZFA:0001710
mossy fiber
Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer.
ISBN:3764351209
ZFIN:ZDB-PUB-090422-9
mossy fibers
Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli.
Melissa Haendel
2009-08-13T03:18:48Z
TAO:0002185
climbing fibers
zebrafish_anatomy
ZFA:0001711
climbing fiber
Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli.
ISBN:3764351209
ZFIN:ZDB-PUB-090422-9
climbing fibers
Portion of tissue that is part of the heart tube and will become the bulbus arteriosus.
Melissa Haendel
2009-08-31T11:25:06Z
TAO:0002230
zebrafish_anatomy
ZFA:0001712
presumptive bulbus arteriosus
Portion of tissue that is part of the heart tube and will become the bulbus arteriosus.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites.
Melissa Haendel
2009-08-13T04:32:51Z
TAO:0002218
parallel fibers
zebrafish_anatomy
ZFA:0001713
parallel fiber
Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites.
ISBN:3764351209
ZFIN:ZDB-PUB-090422-9
parallel fibers
Portion of presumptive mesoderm fated to become ventral mesoderm. Determined by fate mapping.
Melissa Haendel
2009-08-24T11:02:45Z
TAO:0002235
zebrafish_anatomy
ZFA:0001714
presumptive ventral mesoderm
Portion of presumptive mesoderm fated to become ventral mesoderm. Determined by fate mapping.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Portion of tissue within the otic vesicle that consists of a thin layer of otic epithelium covering a finger-shaped core of acellular matrix.
Melissa Haendel
2009-08-25T10:45:23Z
TAO:0002215
zebrafish_anatomy
ZFA:0001715
otic vesicle protrusion
Portion of tissue within the otic vesicle that consists of a thin layer of otic epithelium covering a finger-shaped core of acellular matrix.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-090330-11
Otic vesicle protrusion that is initially ventrally located and then fuses with the lateral protrusion, giving rise to the pillar of the lateral semicircular canal.
Melissa Haendel
2009-08-25T10:53:24Z
TAO:0002216
zebrafish_anatomy
ZFA:0001716
otic vesicle ventral protrusion
Otic vesicle protrusion that is initially ventrally located and then fuses with the lateral protrusion, giving rise to the pillar of the lateral semicircular canal.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-090330-11
Portion of tissue around which the semicircular canals flow.
Melissa Haendel
2009-08-25T10:57:52Z
TAO:0002223
zebrafish_anatomy
ZFA:0001717
pillar of the semicircular canal
Portion of tissue around which the semicircular canals flow.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-383
Multi-tissue structure that is part of the heart tube and will become the cardiac atrium.
Melissa Haendel
2009-08-25T12:20:59Z
TAO:0002228
zebrafish_anatomy
ZFA:0001718
presumptive atrium heart tube
Multi-tissue structure that is part of the heart tube and will become the cardiac atrium.
ZFIN:ZDB-PUB-080218-11
Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle.
Melissa Haendel
2009-08-25T12:21:18Z
TAO:0002231
ZFA:0002231
zebrafish_anatomy
ZFA:0001719
presumptive cardiac ventricle heart tube
Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle.
ZFIN:ZDB-PUB-080218-11
Multi-tissue structure that is part of the primitive heart tube and will become the cardiac ventricle.
Melissa Haendel
2009-08-25T01:10:23Z
TAO:0002232
zebrafish_anatomy
ZFA:0001720
presumptive cardiac ventricle primitive heart tube
Multi-tissue structure that is part of the primitive heart tube and will become the cardiac ventricle.
ZFIN:ZDB-PUB-080218-11
Multi-tissue structure that is part of the primitive heart tube and will become the cardiac atrium.
Melissa Haendel
2009-08-25T01:10:28Z
TAO:0002229
zebrafish_anatomy
ZFA:0001721
presumptive atrium primitive heart tube
Multi-tissue structure that is part of the primitive heart tube and will become the cardiac atrium.
ZFIN:ZDB-PUB-080218-11
Portion of tissue that is part of the heart tube and will become the sinus venosus.
Melissa Haendel
2009-08-31T11:40:57Z
TAO:0002234
zebrafish_anatomy
ZFA:0001722
presumptive sinus venosus
Portion of tissue that is part of the heart tube and will become the sinus venosus.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of tissue that is part of the heart tube and will become the atrioventricular canal.
Melissa Haendel
2009-08-31T11:57:36Z
TAO:0002227
zebrafish_anatomy
ZFA:0001723
presumptive atrioventricular canal
Portion of tissue that is part of the heart tube and will become the atrioventricular canal.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of tissue that is part of the heart tube and will become the endocardium.
Melissa Haendel
2009-08-31T01:21:44Z
TAO:0002233
zebrafish_anatomy
ZFA:0001724
presumptive endocardium
Portion of tissue that is part of the heart tube and will become the endocardium.
GOC:cvs
ORCiD:0000-0002-2244-7917
A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons.
Melissa Haendel
2009-09-08T02:10:35Z
CL:0002377
TAO:0002203
zebrafish_anatomy
ZFA:0001725
Range covers Schwann cell precursor and immature Schwann cell, should be split and put into CL.
immature Schwann cell
A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons.
CL:curator
ISBN:0721662544
Artery that extends horizontally across the brain midline which is fed by the caudal division of the internal carotid artery. Three pairs of central arteries extend from the basal communicating artery (BCA), the anterior, middle and posterior mesencephalic central arteries. The BCA does not correspond to the anterior communicating artery of the mammalian circle of Willis. The BCA is unpaired.
TAO:0005000
BCA
zebrafish_anatomy
ZFA:0005000
basal communicating artery
Artery that extends horizontally across the brain midline which is fed by the caudal division of the internal carotid artery. Three pairs of central arteries extend from the basal communicating artery (BCA), the anterior, middle and posterior mesencephalic central arteries. The BCA does not correspond to the anterior communicating artery of the mammalian circle of Willis. The BCA is unpaired.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery.
TAO:0005001
PCA
PCS
caudal communicating segment
posterior communicating segment of the basilar artery
zebrafish_anatomy
ZFA:0005001
posterior communicating artery
An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries.
TAO:0005002
BA
zebrafish_anatomy
ZFA:0005002
basilar artery
Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110426-11
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the pharyngeal region.
TAO:0005003
branchial vasculature
zebrafish_anatomy
branchial basket
ZFA:0005003
pharyngeal vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the pharyngeal region.
GOC:cvs
ORCiD:0000-0002-2244-7917
Artery that is part of the pharyngeal arches.
TAO:0005004
aortic arches
branchial aortic arches
zebrafish_anatomy
ZFA:0005004
aortic arch
Artery that is part of the pharyngeal arches.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
aortic arches
branchial aortic arches
ZFIN:ZDB-PUB-080512-6
Aortic arch that is part of pharyngeal arch 1. The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aorta.
TAO:0005005
AA1
mandibular aortic arch
zebrafish_anatomy
ZFA:0005005
aortic arch 1
Aortic arch that is part of pharyngeal arch 1. The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aorta.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Aortic arch that is part of pharyngeal arch 2. Aortic arch 2 is paired and is a vestigial structure.
TAO:0005006
AA2
hyoid aortic arch
zebrafish_anatomy
ZFA:0005006
aortic arch 2
Aortic arch that is part of pharyngeal arch 2. Aortic arch 2 is paired and is a vestigial structure.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Aortic arch that is part of pharyngeal arch 3. The paired aortic arch 3 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.
TAO:0005007
AA3
zebrafish_anatomy
ZFA:0005007
aortic arch 3
Aortic arch that is part of pharyngeal arch 3. The paired aortic arch 3 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Aortic arch that is part of pharyngeal arch 4. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.
TAO:0005008
AA4
zebrafish_anatomy
ZFA:0005008
aortic arch 4
Aortic arch that is part of pharyngeal arch 4. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Aortic arch that is part of pharyngeal arch 5. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.
TAO:0005009
AA5
zebrafish_anatomy
ZFA:0005009
aortic arch 5
Aortic arch that is part of pharyngeal arch 5. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceed laterally in a ventral direction to drain into the paired primordial midbrain channels (PHBC).
TAO:0005010
MCeV
MeCV
mid-cerebral vein
middle cerebral vein
zebrafish_anatomy
ZFA:0005010
mid cerebral vein
The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceed laterally in a ventral direction to drain into the paired primordial midbrain channels (PHBC).
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
http://zfin.org/zf_info/zfbook/stages/hatch.html
A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf.
TAO:0005011
pseudobranchial arteries
zebrafish_anatomy
ZFA:0005011
pseudobranchial artery
A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
pseudobranchial arteries
Artery that enters the gill filament.
TAO:0005012
AFA
afferent filamental arteries
zebrafish_anatomy
ZFA:0005012
afferent filamental artery
Artery that enters the gill filament.
GOC:cvs
ORCiD:0000-0002-2244-7917
afferent filamental arteries
The branch of the afferent branchial artery that continues posterodorsally.
TAO:0005013
CCB
zebrafish_anatomy
ZFA:0005013
concurrent branch afferent branchial artery
The branch of the afferent branchial artery that continues posterodorsally.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
The anteroventral proceeding branch of the afferent branchial artery.
TAO:0005014
RCB
recurrent branch afferent branchial arteries
zebrafish_anatomy
ZFA:0005014
recurrent branch afferent branchial artery
The anteroventral proceeding branch of the afferent branchial artery.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
recurrent branch afferent branchial arteries
Arterioles which take blood from the afferent filamental arteries to the gill lamella.
TAO:0005015
AFL
afferent lamellar arterioles
zebrafish_anatomy
ZFA:0005015
afferent lamellar arteriole
Arterioles which take blood from the afferent filamental arteries to the gill lamella.
GOC:cvs
ORCiD:0000-0002-2244-7917
afferent lamellar arterioles
Aortic arch that is part of pharyngeal arch 6. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.
TAO:0005016
AA6
zebrafish_anatomy
ZFA:0005016
aortic arch 6
Aortic arch that is part of pharyngeal arch 6. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
The vessel between the anterior cerebral vein and the mid cerebral vein.
TAO:0005017
PMBC
zebrafish_anatomy
ZFA:0005017
primordial midbrain channel
The vessel between the anterior cerebral vein and the mid cerebral vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Artery that exits the gill filament.
TAO:0005018
EFA
zebrafish_anatomy
ZFA:0005018
efferent filamental artery
Artery that exits the gill filament.
GOC:cvs
ORCiD:0000-0002-2244-7917
Arterioles which take blood from the gill lamella to the efferent filamental arteries.
TAO:0005019
ELA
efferent lamellar arterioles
zebrafish_anatomy
ZFA:0005019
efferent lamellar arteriole
Arterioles which take blood from the gill lamella to the efferent filamental arteries.
GOC:cvs
ORCiD:0000-0002-2244-7917
efferent lamellar arterioles
Artery that irrigates the forebrain and midbrain.
TAO:0005020
CtA
zebrafish_anatomy
ZFA:0005020
central artery
Artery that irrigates the forebrain and midbrain.
ZFIN:ZDB-PUB-010205-5
Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC.
TAO:0005021
CCtA
zebrafish_anatomy
ZFA:0005021
cerebellar central artery
Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC.
ZFIN:ZDB-PUB-010205-5
The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch.
TAO:0005022
ORA
zebrafish_anatomy
external carotid artery
ZFA:0005022
opercular artery
The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
System responsible for generating hematopoietic cells.
TAO:0005023
zebrafish_anatomy
ZFA:0005023
hematopoietic system
System responsible for generating hematopoietic cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around trunk.
TAO:0005024
zebrafish_anatomy
ZFA:0005024
trunk vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around trunk.
GOC:cvs
ORCiD:0000-0002-2244-7917
Paired trunk vessels that run medially along the dorsal-most portion of the trunk and post-vent region. The DLAVs are formed by the longitudinal anastomoses of the intersegmental vessels to form a right and left pair of dorsal longitudinal anastomotic vessels. These paired vessels remodel to form a single plexiform vessel beginning at 3dpf continuing until after 7dpf. The basilar artery connects to the DLAVs at the caudal end of the medulla oblongata. In the early embryo (2.5-3.5 dpf) the primitive hindbrain channels also connect to the DLAV.
TAO:0005025
DLAV
zebrafish_anatomy
ZFA:0005025
Eventually half of the ISVs will carry blood from the aorta to the DLAVs, and half from the DLAV to the posterior cardinal vein.
dorsal longitudinal anastomotic vessel
Paired trunk vessels that run medially along the dorsal-most portion of the trunk and post-vent region. The DLAVs are formed by the longitudinal anastomoses of the intersegmental vessels to form a right and left pair of dorsal longitudinal anastomotic vessels. These paired vessels remodel to form a single plexiform vessel beginning at 3dpf continuing until after 7dpf. The basilar artery connects to the DLAVs at the caudal end of the medulla oblongata. In the early embryo (2.5-3.5 dpf) the primitive hindbrain channels also connect to the DLAV.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel.
TAO:0005026
PHS
lateral head vein
zebrafish_anatomy
ZFA:0005026
primary head sinus
Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata.
TAO:0005027
PCeV
caudal cerebral vein
zebrafish_anatomy
ZFA:0005027
posterior cerebral vein
Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata.
ZFIN:ZDB-PUB-010205-5
Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf.
TAO:0005028
DA-PCV joint
DP joint
aorta gonad mesonephros region
dorsal aorta - posterior cardinal vein joint
zebrafish_anatomy
AGM
DA roof
ZFA:0005028
ventral wall of dorsal aorta
Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf.
GOC:cvs
ORCiD:0000-0002-2244-7917
dorsal aorta - posterior cardinal vein joint
ZFIN:ZDB-PUB-061227-29
Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells.
TAO:0005029
RBI
zebrafish_anatomy
anterior myeloid compartment
ZFA:0005029
rostral blood island
Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
Vein that branches off the nasal ciliary artery. Initially, at 2dpf, the dorsal ciliary vein (DCV) drains into the primordial midbrain channel (PMBC) or the PMBC/PHBC junction. Later, by 3.5dpf, the DCV drains into the optic choroid vascular plexus. The dorsal branch of the inner optic circle drains into the DCV.
TAO:0005030
DCV
zebrafish_anatomy
ZFA:0005030
dorsal ciliary vein
Vein that branches off the nasal ciliary artery. Initially, at 2dpf, the dorsal ciliary vein (DCV) drains into the primordial midbrain channel (PMBC) or the PMBC/PHBC junction. Later, by 3.5dpf, the DCV drains into the optic choroid vascular plexus. The dorsal branch of the inner optic circle drains into the DCV.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata.
TAO:0005031
DLV
zebrafish_anatomy
ZFA:0005031
dorsal longitudinal vein
Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata.
ZFIN:ZDB-PUB-010205-5
Vein that connects to the hyaloid vein that drains the eye. External to eye.
TAO:0005032
OV
zebrafish_anatomy
ZFA:0005032
optic vein
Vein that connects to the hyaloid vein that drains the eye. External to eye.
ZFIN:ZDB-PUB-010205-5
Is an pair of arteries that form from the intersegmental vessels at the level of the base of the spinal cord, adjacent to the myotome.
TAO:0005033
vertebral arteries
zebrafish_anatomy
ZFA:0005033
vertebral artery
Is an pair of arteries that form from the intersegmental vessels at the level of the base of the spinal cord, adjacent to the myotome.
ZFIN:ZDB-PUB-010205-5
vertebral arteries
Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf.
TAO:0005034
PAV
zebrafish_anatomy
ZFA:0005034
parachordal vessel
Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-030908-4
Vein that drains the vascular plexus of the midgut and hindgut. At early stages the subintestinal vein (SIV) drains into the PCV and the CCV. At later stages the SIV drains into the hepatic sinusoid. The SIV are begin as paired veins. After 4dpf the remains of the left SIV forms separate segments that empty into the right SIV and eventually merge with the right. At 3dpf the rostral end of left SIV begins to form the reticular hepatic sinusoids. The portion of the left SIV caudal to the hepatic sinusoid forms the hepatic portal vein.
TAO:0005035
SIV
vitelline vein
zebrafish_anatomy
ZFA:0005035
subintestinal vein
Vein that drains the vascular plexus of the midgut and hindgut. At early stages the subintestinal vein (SIV) drains into the PCV and the CCV. At later stages the SIV drains into the hepatic sinusoid. The SIV are begin as paired veins. After 4dpf the remains of the left SIV forms separate segments that empty into the right SIV and eventually merge with the right. At 3dpf the rostral end of left SIV begins to form the reticular hepatic sinusoids. The portion of the left SIV caudal to the hepatic sinusoid forms the hepatic portal vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus.
TAO:0005036
SIA
zebrafish_anatomy
ZFA:0005036
supraintestinal artery
A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the post-vent region. This is frequently referred to as tail vasculature in the zebrafish community.
TAO:0005037
zebrafish_anatomy
tail vasculature
ZFA:0005037
post-vent vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the post-vent region. This is frequently referred to as tail vasculature in the zebrafish community.
GOC:cvs
ORCiD:0000-0002-2244-7917
TAO:0005038
supraintestinal veins
zebrafish_anatomy
<new synonym>
ZFA:0005038
supraintestinal vein
supraintestinal veins
TAO:0005039
ALM
zebrafish_anatomy
ZFA:0005039
anterior lateral mesoderm
TAO:0005040
PLM
zebrafish_anatomy
ZFA:0005040
posterior lateral mesoderm
TAO:0005041
ALPM
zebrafish_anatomy
ZFA:0005041
anterior lateral plate mesoderm
TAO:0005042
PLPM
zebrafish_anatomy
ZFA:0005042
posterior lateral plate mesoderm
An ectopic melanophore accumulation analogous to a nevi (mole) in humans.
TAO:0005043
f-nevi
naevus
zebrafish_anatomy
ZFA:0005043
nevus
An ectopic melanophore accumulation analogous to a nevi (mole) in humans.
GOC:cvs
ORCiD:0000-0002-2244-7917
The artery that carries blood to the eye. It branches from the primitive internal carotid artery and enters the eye ventrally through the optic fissure.
TAO:0005044
optic arteries
zebrafish_anatomy
ZFA:0005044
optic artery
The artery that carries blood to the eye. It branches from the primitive internal carotid artery and enters the eye ventrally through the optic fissure.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
optic arteries
Artery that is internal to the eye.
TAO:0005045
hyaloid arteries
zebrafish_anatomy
ZFA:0005045
hyaloid artery
Artery that is internal to the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
hyaloid arteries
Vessels that are associated with the posterior region of the lens.
TAO:0005046
hyaloid vessels
zebrafish_anatomy
hyaloid vasculature
ZFA:0005046
hyaloid vessel
Vessels that are associated with the posterior region of the lens.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
hyaloid vessels
Vein internal to the eye.
TAO:0005047
hyaloid veins
zebrafish_anatomy
ZFA:0005047
hyaloid vein
Vein internal to the eye.
ZFIN:ZDB-PUB-010205-5
hyaloid veins
Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head.
TAO:0005048
PPrA
zebrafish_anatomy
ZFA:0005048
primitive prosencephalic artery
Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head.
ZFIN:ZDB-PUB-010205-5
After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery.
TAO:0005049
PrA
zebrafish_anatomy
ZFA:0005049
prosencephalic artery
After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery.
GOC:cvs
ORCiD:0000-0002-2244-7917
The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo.
TAO:0005050
PLA
zebrafish_anatomy
ZFA:0005050
palatocerebral artery
The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo.
ZFIN:ZDB-PUB-010205-5
Connect the palatocerebral artery with the prosencephalic artery.
TAO:0005051
CMV
communicating vessels
zebrafish_anatomy
ZFA:0005051
communicating vessel palatocerebral artery
Connect the palatocerebral artery with the prosencephalic artery.
ZFIN:ZDB-PUB-010205-5
Arteries that irrigate rostral regions of the midbrain. They extend between the basal communicating artery to the anterior cerebral vein.
TAO:0005052
AMCtA
rostral mesencephalic central artery
zebrafish_anatomy
ZFA:0005052
anterior mesencephalic central artery
Arteries that irrigate rostral regions of the midbrain. They extend between the basal communicating artery to the anterior cerebral vein.
ZFIN:ZDB-PUB-010205-5
Artery that branches off the cranial division of the internal carotid artery. It bifurcates near the eye.
TAO:0005053
NCA
zebrafish_anatomy
ZFA:0005053
nasal ciliary artery
Artery that branches off the cranial division of the internal carotid artery. It bifurcates near the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Vessel that circles the inner rim of the optic capsule. The inner optic circle drains ventrally into the optic vein and dorsally into the dorsal ciliary vein.
TAO:0005054
IOC
zebrafish_anatomy
ZFA:0005054
inner optic circle
Vessel that circles the inner rim of the optic capsule. The inner optic circle drains ventrally into the optic vein and dorsally into the dorsal ciliary vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins.
TAO:0005055
MPLV
zebrafish_anatomy
ZFA:0005055
median palatocerebral vein
Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Vein that drains the median palatocerebral vein into the optic vein.
TAO:0005056
PLV
zebrafish_anatomy
ZFA:0005056
palatocerebral vein
Vein that drains the median palatocerebral vein into the optic vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
External layer of the heart.
TAO:0005057
zebrafish_anatomy
ZFA:0005057
No evidence of epicardium layer in cardiac atrium in Hu et al 2001.
epicardium
External layer of the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space.
TAO:0005058
zebrafish_anatomy
ZFA:0005058
ventricular epicardium
The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010912-30
The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences.
TAO:0005059
zebrafish_anatomy
trabecula
ZFA:0005059
Cardiac conduction may occur in the trabecular layer via trabecular fibers, PMID: 12626327.
trabecular layer
The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences.
ZFIN:ZDB-PUB-010912-30
TAO:0005060
zebrafish_anatomy
ZFA:0005060
trabecular layer of ventricle
Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer.
TAO:0005061
zebrafish_anatomy
ZFA:0005061
ventricular myocardium
Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010912-30
The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle.
TAO:0005062
zebrafish_anatomy
ZFA:0005062
compact layer of ventricle
The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anatomical system located in the heart that initiates and propagates heart contraction. The cardiac pacemaker.
TAO:0005063
cardiac pacemaker
central conduction system
zebrafish_anatomy
ZFA:0005063
cardiac conduction system
Anatomical system located in the heart that initiates and propagates heart contraction. The cardiac pacemaker.
GOC:cvs
ORCiD:0000-0002-2244-7917
The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice.
TAO:0005064
zebrafish_anatomy
ZFA:0005064
atrioventricular valve
The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010912-30
Multi-tissue structure composed of leaflets that separate parts of the heart, preventing blood backflow.
TAO:0005065
heart valves
zebrafish_anatomy
ZFA:0005065
heart valve
Multi-tissue structure composed of leaflets that separate parts of the heart, preventing blood backflow.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
heart valves
The portion of tissue that is the outer layer of the bulbus arteriosus. It is composed of scattered layers of interrupted elastic lamina.
TAO:0005066
bulbus arteriosus externa
zebrafish_anatomy
ZFA:0005066
bulbus arteriosus outer layer
The portion of tissue that is the outer layer of the bulbus arteriosus. It is composed of scattered layers of interrupted elastic lamina.
ZFIN:ZDB-PUB-010912-30
Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils.
TAO:0005067
bulbus arteriosus media
zebrafish_anatomy
ZFA:0005067
bulbus arteriosus middle layer
Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils.
ZFIN:ZDB-PUB-010912-30
Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer.
TAO:0005068
bulbus arteriosus intima
zebrafish_anatomy
ZFA:0005068
bulbus arteriosus inner layer
Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer.
ZFIN:ZDB-PUB-010912-30
Portion of tissue containing 3 and 30 cells in dorsal right quadrant of atrium that initiate heart beat.
TAO:0005069
zebrafish_anatomy
ZFA:0005069
sinoatrial node
Portion of tissue containing 3 and 30 cells in dorsal right quadrant of atrium that initiate heart beat.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101115-23
The portion of tissue in the atrioventricular canal that slows impulse propagation between the atrium and cardiac ventricle.
TAO:0005070
AV node
zebrafish_anatomy
downstream pacemaker
ZFA:0005070
atrioventricular node
The portion of tissue in the atrioventricular canal that slows impulse propagation between the atrium and cardiac ventricle.
ZFIN:ZDB-PUB-060227-6
ZFA:0005059
TAO:0005071
HPS
His-Purkinje system
His-Purkinji network
zebrafish_anatomy
ZFA:0005071
Appears to be mammalian due to exact synonym His-Perkinje system, which doesn't have an exact analog in fish (or frogs). PMID:22984480 PLoS One. 2012;7(9):e44231.
distal conduction system
true
A portion of endocardial tissue that is part of the atrioventricular ring.
TAO:0005072
zebrafish_anatomy
ZFA:0005072
endocardial ring
A portion of endocardial tissue that is part of the atrioventricular ring.
GOC:cvs
ORCiD:0000-0002-2244-7917
A ring of conduction tissue that forms in the atrioventricular canal.
TAO:0005073
AV ring
zebrafish_anatomy
ZFA:0005073
atrioventricular ring
A ring of conduction tissue that forms in the atrioventricular canal.
ZFIN:ZDB-PUB-060227-6
Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods.
TAO:0005074
zebrafish_anatomy
ZFA:0005074
central cardiac conduction system
Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060227-6
Portion of the cardiac conduction system, with rapid impulse propagation. In the zebrafish fast conduction takes place in the trabecular layer.
TAO:0005075
ventricular fast conduction system
zebrafish_anatomy
distal conduction system
ZFA:0005075
peripheral cardiac conduction system
Portion of the cardiac conduction system, with rapid impulse propagation. In the zebrafish fast conduction takes place in the trabecular layer.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120927-27
ZFIN:ZDB-PUB-120928-25
ventricular fast conduction system
ZFIN:ZDB-PUB-120927-27
Is a portion of tissue that will develop into vasculature.
TAO:0005076
zebrafish_anatomy
ZFA:0005076
primordial vasculature
Is a portion of tissue that will develop into vasculature.
GOC:cvs
ORCiD:0000-0002-2244-7917
The primordial vasculature that will develop into blood vessels by the process of tubulogenesis. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels.
TAO:0005077
zebrafish_anatomy
ZFA:0005077
vascular cord
The primordial vasculature that will develop into blood vessels by the process of tubulogenesis. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels.
ZFIN:ZDB-PUB-040416-1
Projects rostrally and dorsally from the AMCtA to irrigate the midportion of the midbrain.
TAO:0005078
MMCtA
zebrafish_anatomy
ZFA:0005078
middle mesencephalic central artery
Projects rostrally and dorsally from the AMCtA to irrigate the midportion of the midbrain.
ZFIN:ZDB-PUB-010205-5
Project dorsally from BCA to irrigate the caudal part of midbrain.
TAO:0005079
PMCtA
caudal mesencephalic central artery
zebrafish_anatomy
ZFA:0005079
posterior mesencephalic central artery
Project dorsally from BCA to irrigate the caudal part of midbrain.
ZFIN:ZDB-PUB-010205-5
An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery.
TAO:0005080
AMA
rostral mesenteric artery
zebrafish_anatomy
ZFA:0005080
anterior mesenteric artery
An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery.
ZFIN:ZDB-PUB-010205-5
Artery that originates as rostral extensions of the dorsal aorta and travels through the hypophyseal fossa into the cranium. The internal carotid artery splits near the hypothalamus and optic nerve to form caudal and cranial divisions.
TAO:0005081
ICA
cranial carotid artery
zebrafish_anatomy
ZFA:0005081
Homologous to the human ICA ZDB-PUB-140605-9.
internal carotid artery
Artery that originates as rostral extensions of the dorsal aorta and travels through the hypophyseal fossa into the cranium. The internal carotid artery splits near the hypothalamus and optic nerve to form caudal and cranial divisions.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140605-9
Branch of the nasal ciliary artery (NCA) that splits off of the NCA near the lens and forms the dorsal ciliary vein.
TAO:0005082
dorsal branch nasal ciliary arteries
zebrafish_anatomy
ZFA:0005082
dorsal branch nasal ciliary artery
Branch of the nasal ciliary artery (NCA) that splits off of the NCA near the lens and forms the dorsal ciliary vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
dorsal branch nasal ciliary arteries
TAO:0005083
zebrafish_anatomy
ZFA:0005083
ventral branch nasal ciliary artery
These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head.
TAO:0005084
metencephalic arteries
zebrafish_anatomy
ZFA:0005084
metencephalic artery
These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
metencephalic arteries
The nasal arteries start at the internal carotid artery and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins.
TAO:0005085
NA
zebrafish_anatomy
ZFA:0005085
nasal artery
The nasal arteries start at the internal carotid artery and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins.
ZFIN:ZDB-PUB-010205-5
The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch <a href='http://zfin.org/zf_info/zfbook/stages/hatch.html'> Kimmel et al. 1993</a>.
TAO:0005086
PA
subclavian artery
zebrafish_anatomy
ZFA:0005086
pectoral artery
The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch <a href='http://zfin.org/zf_info/zfbook/stages/hatch.html'> Kimmel et al. 1993</a>.
GOC:cvs
ORCiD:0000-0002-2244-7917
Vein from the pectoral fin that drains into the ACV just cranial to the ACV-CCV junction.
TAO:0005087
PV
zebrafish_anatomy
ZFA:0005087
pectoral vein
Vein from the pectoral fin that drains into the ACV just cranial to the ACV-CCV junction.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery.
TAO:0005088
PMA
caudal mesenteric artery
zebrafish_anatomy
ZFA:0005088
posterior mesenteric artery
Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery.
ZFIN:ZDB-PUB-010205-5
An elaborate set of vessels that branch off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder.
TAO:0005089
SBA
zebrafish_anatomy
ZFA:0005089
swim bladder artery
An elaborate set of vessels that branch off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder.
ZFIN:ZDB-PUB-010205-5
Vein that collects blood from the small intestine, pancreas and spleen and routes it through the liver.
TAO:0005090
HPV
zebrafish_anatomy
primary hepatic portal vein
ZFA:0005090
hepatic portal vein
Vein that collects blood from the small intestine, pancreas and spleen and routes it through the liver.
GOC:cvs
ORCiD:0000-0002-2244-7917
http://www.vivo.colostate.edu/hbooks/pathphys/digestion/liver/anatomy.html
Wide thin-walled blood vessels in the liver. The terminal branches of the hepatic portal vein and hepatic artery empty into the sinusoids where the blood mixes. In mammals they have neither venous or arterial markers. Sinusoids are scattered throughout the parenchyma and appear small and round.
TAO:0005091
hepatic sinusoids
zebrafish_anatomy
ZFA:0005091
hepatic sinusoid
Wide thin-walled blood vessels in the liver. The terminal branches of the hepatic portal vein and hepatic artery empty into the sinusoids where the blood mixes. In mammals they have neither venous or arterial markers. Sinusoids are scattered throughout the parenchyma and appear small and round.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090422-17
hepatic sinusoids
Paired veins that sprout from the dorsal midline junction and dive ventrally. The mesencephalic veins are fed by the mesencephalic arteries, after 2.5 dpf, and drain into the dorsal longitudinal vessel after 5dpf.
TAO:0005092
MsV
zebrafish_anatomy
ZFA:0005092
mesencephalic vein
Paired veins that sprout from the dorsal midline junction and dive ventrally. The mesencephalic veins are fed by the mesencephalic arteries, after 2.5 dpf, and drain into the dorsal longitudinal vessel after 5dpf.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Vein that is fed by the nasal artery. It rises dorsally around the front of the head, draining into the ACeV and eventually into the PMBC on either side.
TAO:0005093
NV
zebrafish_anatomy
ZFA:0005093
nasal vein
Vein that is fed by the nasal artery. It rises dorsally around the front of the head, draining into the ACeV and eventually into the PMBC on either side.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina.
ZFA:0005228
TAO:0005094
CVP
choroid vasculature
zebrafish_anatomy
ZFA:0005094
optic choroid vascular plexus
Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010205-5
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the fin.
TAO:0005095
zebrafish_anatomy
ZFA:0005095
fin vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Vasculature of the pectoral fin.
TAO:0005096
zebrafish_anatomy
ZFA:0005096
pectoral fin vasculature
Vasculature of the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the caudal fin.
TAO:0005097
zebrafish_anatomy
ZFA:0005097
caudal fin vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia.
TAO:0005098
central ray arteries
zebrafish_anatomy
ZFA:0005098
central ray artery
Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031119-3
central ray arteries
Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme.
TAO:0005099
ray veins
zebrafish_anatomy
ZFA:0005099
ray vein
Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031119-3
ray veins
Vessels that travel between artery and veins or vein and vein in a single ray.
TAO:0005100
intervessel comisures
zebrafish_anatomy
ZFA:0005100
intervessel commissure
Vessels that travel between artery and veins or vein and vein in a single ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
intervessel comisures
Vessels that travel between veins in adjacent rays.
TAO:0005101
interray vessels
zebrafish_anatomy
ZFA:0005101
interray vessel
Vessels that travel between veins in adjacent rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
interray vessels
Stripe of tissue fated to become the median fin fold.
TAO:0005102
zebrafish_anatomy
ZFA:0005102
presumptive median fin fold
Stripe of tissue fated to become the median fin fold.
GOC:cvs
ORCiD:0000-0002-2244-7917
Stripe of tissue on the ventral side of the fish, fated to become the ventral region of the median fin fold.
TAO:0005103
zebrafish_anatomy
ZFA:0005103
presumptive ventral fin fold
Stripe of tissue on the ventral side of the fish, fated to become the ventral region of the median fin fold.
GOC:cvs
ORCiD:0000-0002-2244-7917
Stripe of tissue on the dorsal side of the fish, fated to become the dorsal region of the median fin fold.
TAO:0005104
zebrafish_anatomy
ZFA:0005104
presumptive dorsal fin fold
Stripe of tissue on the dorsal side of the fish, fated to become the dorsal region of the median fin fold.
GOC:cvs
ORCiD:0000-0002-2244-7917
A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. The walls are mostly composed of single layer of irregularly shaped endothelial cells. Lymphatic vessels are usually classified as either superficial or deep.
TAO:0005105
lymph vessels
zebrafish_anatomy
lymph vessel
ZFA:0005105
lymph vasculature
A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. The walls are mostly composed of single layer of irregularly shaped endothelial cells. Lymphatic vessels are usually classified as either superficial or deep.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
ZFIN:ZDB-PUB-130218-10
lymph vessels
TAO:0005106
LLL
zebrafish_anatomy
ZFA:0005106
longitudinal lateral lymphatic vessel
TAO:0005107
PL
zebrafish_anatomy
ZFA:0005107
pectoral lymphatic vessel
TAO:0005108
FL
zebrafish_anatomy
ZFA:0005108
Probably a deep lymph vessel. This vessel was shown in ZDB-PUB-060616-13 at 5 weeks post fertilization using Berlin blue dye lymphangiography.
facial lymphatic vessel
Lymph vessel that connects the lateral facial lymph vessel to the thoracic duct near the common cardinal vein.
TAO:0005109
JL
JLV
zebrafish_anatomy
ZFA:0005109
jugular lymphatic vessel
Lymph vessel that connects the lateral facial lymph vessel to the thoracic duct near the common cardinal vein.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein.
TAO:0005110
zebrafish_anatomy
ZFA:0005110
thoracic duct
The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein.
ZFIN:ZDB-PUB-100719-62
Tract that originates in the telencephalon lies medial to the lateral forebrain bundle and extends into the diencephalon approaching the posterior tuberal nucleus. In embryos the tract connects cells in the ventral olfactory bulb to those in the septal area.
TAO:0005111
medial forebrain bundles
zebrafish_anatomy
ZFA:0005111
medial forebrain bundle
Tract that originates in the telencephalon lies medial to the lateral forebrain bundle and extends into the diencephalon approaching the posterior tuberal nucleus. In embryos the tract connects cells in the ventral olfactory bulb to those in the septal area.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-071219-12
ZFIN:ZDB-PUB-961014-1280
medial forebrain bundles
One of eight distinct lateral lines in the 4-day larva. The dorsal line runs along the dorsal side of the body and never extends beyond the dorsal fin. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0005112
dorsal lateral lines
zebrafish_anatomy
ZFA:0005112
dorsal lateral line
One of eight distinct lateral lines in the 4-day larva. The dorsal line runs along the dorsal side of the body and never extends beyond the dorsal fin. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-070907-34
dorsal lateral lines
Neuromast that is part of the dorsal lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
TAO:0005113
neuromast dorsal
zebrafish_anatomy
ZFA:0005113
dorsal lateral line neuromast
Neuromast that is part of the dorsal lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-576
The middle lateral line system develops from cranial ectodermal placodes, that give rise to both the neuromasts and the middle lateral line sensory nerves that innervate the neuromasts. The middle lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body that are innervated by several lateral line nerves, which project to the hindbrain. The middle lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.
TAO:0005114
zebrafish_anatomy
ZFA:0005114
middle lateral line system
The middle lateral line system develops from cranial ectodermal placodes, that give rise to both the neuromasts and the middle lateral line sensory nerves that innervate the neuromasts. The middle lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body that are innervated by several lateral line nerves, which project to the hindbrain. The middle lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis.
TAO:0005115
primI
primary posterior lateral line primordia
zebrafish_anatomy
ZFA:0005115
primary posterior lateral line primordium
Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-040319-12
ZFIN:ZDB-PUB-040916-1
primary posterior lateral line primordia
Second lateral line primordium. These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction.
TAO:0005116
secondary posterior lateral line primordia
zebrafish_anatomy
ZFA:0005116
secondary posterior lateral line primordium
Second lateral line primordium. These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-040319-12
ZFIN:ZDB-PUB-040916-1
secondary posterior lateral line primordia
A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration.
TAO:0005117
anterior lateral line primordia
zebrafish_anatomy
ZFA:0005117
anterior lateral line primordium
A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration.
GOC:cvs
ORCiD:0000-0002-2244-7917
anterior lateral line primordia
A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them.
TAO:0005118
middle lateral line primordia
zebrafish_anatomy
ZFA:0005118
middle lateral line primordium
A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them.
GOC:cvs
ORCiD:0000-0002-2244-7917
middle lateral line primordia
A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel.
TAO:0005119
barbel primordia
zebrafish_anatomy
ZFA:0005119
barbel primordium
A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
barbel primordia
The serous membrane that lines the peritoneal cavity. The peritoneum secretes serous fluid which allows free movement of the peritoneum and the intraperitoneal organs.
TAO:0005120
zebrafish_anatomy
ZFA:0005120
peritoneum
The serous membrane that lines the peritoneal cavity. The peritoneum secretes serous fluid which allows free movement of the peritoneum and the intraperitoneal organs.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Dorsolateral placode that gives rise to the middle lateral line.
TAO:0005121
middle lateral line placodes
zebrafish_anatomy
ZFA:0005121
middle lateral line placode
Dorsolateral placode that gives rise to the middle lateral line.
GOC:cvs
ORCiD:0000-0002-2244-7917
middle lateral line placodes
Dorsal region of the axial hypoblast.
TAO:0005122
zebrafish_anatomy
ZFA:0005122
dorsal axial hypoblast
Dorsal region of the axial hypoblast.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Epithelium lining the lumen of the gut.
TAO:0005123
zebrafish_anatomy
ZFA:0005123
gut epithelium
Epithelium lining the lumen of the gut.
GOC:cvs
ORCiD:0000-0002-2244-7917
Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible.
TAO:0005124
intestine epithelium
villous epithelium
zebrafish_anatomy
ZFA:0005124
intestinal epithelium
Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible.
ZFIN:ZDB-PUB-050209-3
villous epithelium
ZFIN:ZDB-PUB-090217-11
The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine.
TAO:0005125
intestinal villi
zebrafish_anatomy
ZFA:0005125
intestinal villus
The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine.
ZFIN:ZDB-PUB-050209-3
intestinal villi
Intestinal epithelium which lines the lumen of the intestinal bulb.
TAO:0005126
zebrafish_anatomy
ZFA:0005126
intestinal bulb epithelium
Intestinal epithelium which lines the lumen of the intestinal bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
Intestinal epithelium which lines the lumen of the mid intestine.
TAO:0005127
zebrafish_anatomy
ZFA:0005127
mid intestine epithelium
Intestinal epithelium which lines the lumen of the mid intestine.
GOC:cvs
ORCiD:0000-0002-2244-7917
Intestinal epithelium which lines the lumen of the posterior intestine.
TAO:0005128
zebrafish_anatomy
ZFA:0005128
posterior intestine epithelium
Intestinal epithelium which lines the lumen of the posterior intestine.
GOC:cvs
ORCiD:0000-0002-2244-7917
A double layer composed of peritoneum that attaches the visceral organs to the body wall.
TAO:0005129
zebrafish_anatomy
ZFA:0005129
mesentery
A double layer composed of peritoneum that attaches the visceral organs to the body wall.
GOC:cvs
ORCiD:0000-0002-2244-7917
The mesentery that originates from the dorsal side of the peritoneal cavity.
TAO:0005130
zebrafish_anatomy
ZFA:0005130
dorsal mesentery
The mesentery that originates from the dorsal side of the peritoneal cavity.
GOC:cvs
ORCiD:0000-0002-2244-7917
The peritoneum that lines the walls of the peritoneal cavity.
TAO:0005131
zebrafish_anatomy
ZFA:0005131
parietal peritoneum
The peritoneum that lines the walls of the peritoneal cavity.
GOC:cvs
ORCiD:0000-0002-2244-7917
The part of peritoneum that is a serous membrane covers the external surfaces of most abdominal organs.
TAO:0005132
zebrafish_anatomy
tunica serosa
ZFA:0005132
visceral peritoneum
The part of peritoneum that is a serous membrane covers the external surfaces of most abdominal organs.
GOC:cvs
ORCiD:0000-0002-2244-7917
tunica serosa
http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html
The mesentery that originates from the ventral side of the peritoneal cavity.
TAO:0005133
zebrafish_anatomy
ZFA:0005133
ventral mesentery
The mesentery that originates from the ventral side of the peritoneal cavity.
GOC:cvs
ORCiD:0000-0002-2244-7917
Epithelium that is part of a developing tooth or dental organ.
TAO:0005134
dental epithelia
zebrafish_anatomy
ZFA:0005134
dental epithelium
Epithelium that is part of a developing tooth or dental organ.
GOC:cvs
ORCiD:0000-0002-2244-7917
dental epithelia
Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth.
TAO:0005135
pharyngeal tooth epithelium
tooth epithelium
zebrafish_anatomy
ZFA:0005135
primary dental epithelium
Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth.
GOC:cvs
ORCiD:0000-0002-2244-7917
Inner layer of the dental organ, composed of ameloblasts.
TAO:0005136
ide
inner enamel epithelium
zebrafish_anatomy
ZFA:0005136
inner dental epithelium
Inner layer of the dental organ, composed of ameloblasts.
GOC:cvs
ORCiD:0000-0002-2244-7917
Outer layer of the dental organ.
TAO:0005137
ode
zebrafish_anatomy
ZFA:0005137
outer dental epithelium
Outer layer of the dental organ.
GOC:cvs
ORCiD:0000-0002-2244-7917
A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth.
TAO:0005138
enamel organ
zebrafish_anatomy
ZFA:0005138
dental organ
A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-001208-4
Mesenchyme enclosed by dental organ.
TAO:0005139
zebrafish_anatomy
ZFA:0005139
dental mesenchyme
Mesenchyme enclosed by dental organ.
GOC:cvs
ORCiD:0000-0002-2244-7917
Tissue of the developing tooth. It is composed of pre-odontoblast and undifferentiated mesenchyme cells and connects to the basal lamina.
TAO:0005140
pharyngeal tooth mesenchyme
tooth mesenchyme
zebrafish_anatomy
ZFA:0005140
dental papilla
Tissue of the developing tooth. It is composed of pre-odontoblast and undifferentiated mesenchyme cells and connects to the basal lamina.
GOC:cvs
ORCiD:0000-0002-2244-7917
Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast.
TAO:0005141
zebrafish_anatomy
ZFA:0005141
tooth pulp
Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast.
GOC:cvs
ORCiD:0000-0002-2244-7917
A dentine-like hypermineralized substance that covers the zebrafish tooth tip.
TAO:0005142
zebrafish_anatomy
enamel
ZFA:0005142
enameloid
A dentine-like hypermineralized substance that covers the zebrafish tooth tip.
GOC:cvs
ORCiD:0000-0002-2244-7917
Mineralized collagen containing substance that forms the tooth structure. The dentine of first-generation teeth of zebrafish is entirely atubular.
TAO:0005143
dentin
zebrafish_anatomy
ZFA:0005143
dentine
Mineralized collagen containing substance that forms the tooth structure. The dentine of first-generation teeth of zebrafish is entirely atubular.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-001208-4
Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris.
TAO:0005144
ampullary nerves
zebrafish_anatomy
ZFA:0005144
ampullary nerve
Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris.
GOC:cvs
ORCiD:0000-0002-2244-7917
ampullary nerves
Portion of tissue composed of contractile fibers.
TAO:0005145
muscles
zebrafish_anatomy
ZFA:0005145
muscle
Portion of tissue composed of contractile fibers.
GOC:cvs
ORCiD:0000-0002-2244-7917
muscles
An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation.
TAO:0005146
zebrafish_anatomy
ZFA:0005146
area postrema
An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation.
ZFIN:ZDB-PUB-970602-2
A portion of tissue that is regrowing after damage or amputation.
TAO:0005147
regenerating tissues
zebrafish_anatomy
ZFA:0005147
regenerating tissue
A portion of tissue that is regrowing after damage or amputation.
GOC:cvs
ORCiD:0000-0002-2244-7917
regenerating tissues
Part of the regeneration epithelium closest to the fin.
TAO:0005148
apical epidermal caps
zebrafish_anatomy
ZFA:0005148
apical epidermal cap
Part of the regeneration epithelium closest to the fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
apical epidermal caps
Part of regeneration epithelium at the tip of the fin.
TAO:0005149
distal epidermal caps
zebrafish_anatomy
ZFA:0005149
distal epidermal cap
Part of regeneration epithelium at the tip of the fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
distal epidermal caps
Layer of the wound epidermis that surrounds the blastema.
TAO:0005150
basal wound epidermis
zebrafish_anatomy
ZFA:0005150
basal regeneration epithelium
Layer of the wound epidermis that surrounds the blastema.
GOC:cvs
ORCiD:0000-0002-2244-7917
Iridescent iridophore containing gold reflecting platelets.
Ceri
2009-03-12T12:34:16Z
TAO:0005151
zebrafish_anatomy
ZFA:0005151
gold iridophore
Iridescent iridophore containing gold reflecting platelets.
GOC:cvs
ORCiD:0000-0002-2244-7917
Iridescent iridophore containing silver reflecting platelets.
Ceri
2009-03-12T12:48:18Z
TAO:0005152
zebrafish_anatomy
ZFA:0005152
silver iridophore
Iridescent iridophore containing silver reflecting platelets.
GOC:cvs
ORCiD:0000-0002-2244-7917
Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces.
Ceri
2009-03-12T01:31:49Z
TAO:0005153
diarthroses
zebrafish_anatomy
diarthrodial joints
ZFA:0005153
synovial joint
Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of organism substance that is a clear fluid that occupies the space in synovial joints.
Ceri
2009-03-12T01:42:07Z
TAO:0005154
zebrafish_anatomy
ZFA:0005154
synovial fluid
Portion of organism substance that is a clear fluid that occupies the space in synovial joints.
GOC:cvs
ORCiD:0000-0002-2244-7917
Is a joint where the ends of two bones are connected by cartilage.
Ceri
2009-03-12T01:52:52Z
TAO:0005155
synchondrosis
zebrafish_anatomy
ZFA:0005155
cartilaginous joint
Is a joint where the ends of two bones are connected by cartilage.
GOC:cvs
ORCiD:0000-0002-2244-7917
A joint where fibrous tissue such as ligament connects two calcified tissues.
Ceri
2009-03-12T01:54:12Z
TAO:0005156
syndesmoses
syndesmosis
zebrafish_anatomy
ZFA:0005156
fibrous joint
A joint where fibrous tissue such as ligament connects two calcified tissues.
GOC:cvs
ORCiD:0000-0002-2244-7917
syndesmoses
Tela chorioidea that lines the tectal ventricle.
Ceri
2009-04-02T01:30:05Z
TAO:0005157
tela choroidea tectal ventricle
zebrafish_anatomy
ZFA:0005157
tela chorioidea tectal ventricle
Tela chorioidea that lines the tectal ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Tela chorioidea that lines the fourth ventricle.
Ceri
2009-04-02T01:40:34Z
TAO:0005158
tela choroidea fourth ventricle
zebrafish_anatomy
ZFA:0005158
tela chorioidea fourth ventricle
Tela chorioidea that lines the fourth ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Tela chorioidea that lines the third ventricle.
Ceri
2009-04-02T02:04:56Z
TAO:0005159
tela choroidea third ventricle
zebrafish_anatomy
ZFA:0005159
tela chorioidea third ventricle
Tela chorioidea that lines the third ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Tela chorioidea that lines the telencephalic ventricle.
Ceri
2009-04-02T02:20:33Z
TAO:0005160
tela choroidea telencephalic ventricle
zebrafish_anatomy
ZFA:0005160
tela chorioidea telencephalic ventricle
Tela chorioidea that lines the telencephalic ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Artery that supplies blood to the liver.
Ceri
2009-04-20T03:43:46Z
TAO:0005161
zebrafish_anatomy
ZFA:0005161
hepatic artery
Artery that supplies blood to the liver.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ducts that transport enzymes between organs in the digestive system.
Ceri
2009-04-20T04:51:36Z
TAO:0005162
zebrafish_anatomy
ZFA:0005162
digestive system duct
Ducts that transport enzymes between organs in the digestive system.
GOC:cvs
ORCiD:0000-0002-2244-7917
Intercellular space surrounded by the basal surface of the hepatocytes that collect bile.
Ceri
2009-04-20T05:33:42Z
TAO:0005163
zebrafish_anatomy
ZFA:0005163
Should be located in rather then part_of when we get the appropriate relation.
bile canaliculus
Intercellular space surrounded by the basal surface of the hepatocytes that collect bile.
GOC:cvs
ORCiD:0000-0002-2244-7917
Digestive system duct that collects bile from the canaliculus and transports bile through the liver.
Ceri
2009-04-20T05:39:12Z
TAO:0005164
zebrafish_anatomy
ZFA:0005164
bile ductule
Digestive system duct that collects bile from the canaliculus and transports bile through the liver.
GOC:cvs
ORCiD:0000-0002-2244-7917
Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.
Ceri
2009-04-20T05:43:23Z
TAO:0005165
zebrafish_anatomy
ZFA:0005165
common bile duct
Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
Duct that connects the gall bladder and the common bile duct.
Ceri
2009-04-20T05:56:39Z
TAO:0005166
zebrafish_anatomy
ZFA:0005166
cystic duct
Duct that connects the gall bladder and the common bile duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine.
Ceri
2009-04-20T05:59:27Z
TAO:0005167
ampulla of Vater
papilla Vateri
zebrafish_anatomy
papilla duodeni major
ZFA:0005167
hepatopancreatic ampulla
Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine.
ZFIN:ZDB-PUB-070212-11
ZFIN:ZDB-PUB-080414-12
Vein that is central to a lobule in the liver.
Ceri
2009-04-21T02:46:13Z
TAO:0005168
zebrafish_anatomy
ZFA:0005168
central vein
Vein that is central to a lobule in the liver.
GOC:cvs
ORCiD:0000-0002-2244-7917
Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.
Ceri
2009-04-27T04:19:40Z
TAO:0005169
zebrafish_anatomy
ZFA:0005169
intrahepatic bile duct
Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct.
Ceri
2009-04-27T04:26:36Z
TAO:0005170
zebrafish_anatomy
ZFA:0005170
extrahepatic duct
Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
A tube shaped multi-tissue structure lined with epithelial cells that collects secretions and routes them to their destination.
Ceri
2009-04-27T04:45:59Z
TAO:0005171
zebrafish_anatomy
ZFA:0005171
duct
A tube shaped multi-tissue structure lined with epithelial cells that collects secretions and routes them to their destination.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of the liver which develops on the fish's left side.
Ceri
2009-04-27T05:51:33Z
TAO:0005172
1st lobe
first lobe
zebrafish_anatomy
ZFA:0005172
left liver lobe
Portion of the liver which develops on the fish's left side.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of the liver which develops on the fish's right side adjacent to the gall bladder.
Ceri
2009-04-27T05:59:16Z
TAO:0005173
2nd lobe
gall bladder lobe
second lobe
zebrafish_anatomy
ZFA:0005173
right liver lobe
Portion of the liver which develops on the fish's right side adjacent to the gall bladder.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of the liver which develops on the fish's ventral side.
Ceri
2009-04-27T06:04:51Z
TAO:0005174
3rd lobe
third lobe
zebrafish_anatomy
ZFA:0005174
ventral liver lobe
Portion of the liver which develops on the fish's ventral side.
GOC:cvs
ORCiD:0000-0002-2244-7917
An interneuron in the spinal cord. CoPA are bipolar with "T" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord.
Ceri
2009-06-18T01:41:54Z
TAO:0005175
primary commissural interneuron
zebrafish_anatomy
ZFA:0005175
This term is a leaf node in the zebrafish AO and is not in the CL.
CoPA
An interneuron in the spinal cord. CoPA are bipolar with "T" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord.
ZFIN:ZDB-PUB-010807-17
ZFIN:ZDB-PUB-961014-274
ZFIN:ZDB-PUB-961014-649
An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord.
Ceri
2009-06-18T02:07:49Z
TAO:0005176
secondary commissural interneuron
zebrafish_anatomy
ZFA:0005176
This term is a leaf node in the zebrafish AO and is not in the CL.
CoSA
An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord.
ZFIN:ZDB-PUB-010807-17
ZFIN:ZDB-PUB-961014-649
An interneuron of the spinal cord. VeLD neurons have an ipsilateral longitudinal axon.
Ceri
2009-06-18T02:14:18Z
TAO:0005177
ventral longitudinal interneuron
zebrafish_anatomy
V2b interneuron
ZFA:0005177
This term is a leaf node in the zebrafish AO and is not in the CL.
VeLD
An interneuron of the spinal cord. VeLD neurons have an ipsilateral longitudinal axon.
ZFIN:ZDB-PUB-961014-649
An interneuron of the spinal cord.
Ceri
2009-06-18T02:21:58Z
TAO:0005178
dorsal longitudinal interneuron
zebrafish_anatomy
ZFA:0005178
This term is a leaf node in the zebrafish AO and is not in the CL.
DoLA
An interneuron of the spinal cord.
ZFIN:ZDB-PUB-961014-649
A primary motor neuron that is part of the spinal cord. The axon turns caudally and dorsally, coursing between the surface of the spinal cord and the medial surface of the axial muscles to the dorsal median septum. The MiP axon then extends dorsally to the surface of the muscle, where it turns to arborize ventrally over the lateral surface of the axial muscle.
Ceri
2009-06-18T04:02:28Z
TAO:0005179
middle primary motoneuron
zebrafish_anatomy
ZFA:0005179
This term is a leaf node in the zebrafish AO and is not in the CL.
MiP motor neuron
A primary motor neuron that is part of the spinal cord. The axon turns caudally and dorsally, coursing between the surface of the spinal cord and the medial surface of the axial muscles to the dorsal median septum. The MiP axon then extends dorsally to the surface of the muscle, where it turns to arborize ventrally over the lateral surface of the axial muscle.
ZFIN:ZDB-PUB-961014-1247
ZFIN:ZDB-PUB-961014-272
ZFIN:ZDB-PUB-961014-814
A primary motoneuron that is part of the spinal cord. The axon of the CaP motoneuron on emerging from the ventral root. At the horizontal septum, however, the RoP axon turns laterally to extend within the horizontal septum to the lateral surface of the muscle.
Ceri
2009-06-18T04:05:40Z
TAO:0005180
rostral primary motoneuron
zebrafish_anatomy
ZFA:0005180
This term is a leaf node in the zebrafish AO and is not in the CL.
RoP motor neuron
A primary motoneuron that is part of the spinal cord. The axon of the CaP motoneuron on emerging from the ventral root. At the horizontal septum, however, the RoP axon turns laterally to extend within the horizontal septum to the lateral surface of the muscle.
ZFIN:ZDB-PUB-961014-1247
ZFIN:ZDB-PUB-961014-272
ZFIN:ZDB-PUB-961014-814
A primary motor neuron of the spinal cord. This cell is present in slightly less than half of the trunk hemisegments. Additionally, this cell has at least 2 different fates: it may become a primary motoneuron and arborize in an exclusive muscle territory, or it may die during embryonic development.
Ceri
2009-06-18T04:38:21Z
TAO:0005181
variable primary motoneuron
zebrafish_anatomy
ZFA:0005181
This term is a leaf node in the zebrafish AO and is not in the CL.
VaP motor neuron
A primary motor neuron of the spinal cord. This cell is present in slightly less than half of the trunk hemisegments. Additionally, this cell has at least 2 different fates: it may become a primary motoneuron and arborize in an exclusive muscle territory, or it may die during embryonic development.
ZFIN:ZDB-PUB-961014-265
ZFIN:ZDB-PUB-961014-276
true
Hindbrain interneuron that is part of rhombomere 5 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral.
Ceri
2009-06-18T05:05:22Z
TAO:0005183
middle dorsal 2 ipsilateral interneuron
zebrafish_anatomy
ZFA:0005183
This term is a leaf node in the zebrafish AO and is not in the CL.
MiD2i
Hindbrain interneuron that is part of rhombomere 5 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus.
Ceri
2009-06-18T05:16:33Z
TAO:0005184
middle dorsal 2 contralateral llf interneuron
zebrafish_anatomy
ZFA:0005184
This term is a leaf node in the zebrafish AO and is not in the CL.
MiD2cl
Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus.
Ceri
2009-06-18T05:18:53Z
TAO:0005185
middle dorsal 2 contralateral mlf interneuron
zebrafish_anatomy
ZFA:0005185
This term is a leaf node in the zebrafish AO and is not in the CL.
MiD2cm
Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus.
ZFIN:ZDB-PUB-961014-770
A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body.
Ceri
2009-06-23T11:38:16Z
TAO:0005186
bifurcate commissural interneuron
zebrafish_anatomy
ZFA:0005186
This term is a leaf node in the zebrafish AO and is not in the CL.
This may be the same as CoBL.
CoB
A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body.
ZFIN:ZDB-PUB-961014-649
Hindbrain interneuron that is part of rhombomere 4, with one medial neuron in each hemi-rhombomere.
Ceri
2009-06-23T12:31:49Z
TAO:0005187
middle medial interneuron
zebrafish_anatomy
ZFA:0005187
MiM1
Hindbrain interneuron that is part of rhombomere 4, with one medial neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 4 with one rostral neuron in each hemi-rhombomere.
Ceri
2009-06-23T12:33:39Z
TAO:0005188
middle rostral 1 interneuron
zebrafish_anatomy
ZFA:0005188
MiR1
Hindbrain interneuron that is part of rhombomere 4 with one rostral neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 5 with one rostral neuron in each hemi-rhombomere.
Ceri
2009-06-23T12:40:02Z
TAO:0005189
middle rostral 2 interneuron
zebrafish_anatomy
ZFA:0005189
MiR2
Hindbrain interneuron that is part of rhombomere 5 with one rostral neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 4 with six ventral neurons in each hemi-rhombomere.
Ceri
2009-06-23T01:10:53Z
TAO:0005190
middle ventral 1 neuron
zebrafish_anatomy
ZFA:0005190
MiV1
Hindbrain interneuron that is part of rhombomere 4 with six ventral neurons in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 5 with five ventral neurons in each hemi-rhombomere.
Ceri
2009-06-23T01:15:56Z
TAO:0005191
middle ventral 2 neuron
zebrafish_anatomy
ZFA:0005191
MiV2
Hindbrain interneuron that is part of rhombomere 5 with five ventral neurons in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 2 with two intermediate-caudal neurons in each hemi-rhombomere.
Ceri
2009-06-23T02:39:18Z
TAO:0005192
rostral intermediate 2 caudal interneuron
zebrafish_anatomy
ZFA:0005192
RoI2C
Hindbrain interneuron that is part of rhombomere 2 with two intermediate-caudal neurons in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 2 with one intermediate-rostral neuron in each hemi-rhombomere.
Ceri
2009-06-23T03:08:46Z
TAO:0005193
rostral intermediate 2 rostral interneuron
zebrafish_anatomy
ZFA:0005193
RoI2R
Hindbrain interneuron that is part of rhombomere 2 with one intermediate-rostral neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 1 with twelve neurons in each hemi-rhombomere. Axon runs in the dorsal spinal cord. The RoL1 stem axon projects ipsilaterally along the brain stem and spinal cord. From the more lateral location of its spinal axon, RoL1's collaterals projected both ventrally and medially. The branching of RoL1 collaterals within the medulla, occur at multiple levels.
Ceri
2009-06-23T03:22:51Z
TAO:0005194
rostral lateral 1 interneuron
zebrafish_anatomy
ZFA:0005194
May have 12 neurons in each hemi rhombomere ZDB-PUB-060217-9.
7 neurons in each hemi rhombomere 080227-17 and 931014-770.
RoL1
Hindbrain interneuron that is part of rhombomere 1 with twelve neurons in each hemi-rhombomere. Axon runs in the dorsal spinal cord. The RoL1 stem axon projects ipsilaterally along the brain stem and spinal cord. From the more lateral location of its spinal axon, RoL1's collaterals projected both ventrally and medially. The branching of RoL1 collaterals within the medulla, occur at multiple levels.
ZFIN:ZDB-PUB-030319-6
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron, part of rhombomere 6, with one caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus.
Ceri
2009-06-22T05:10:40Z
TAO:0005195
middle dorsal 3 contralateral llf interneuron
zebrafish_anatomy
ZFA:0005195
This term is a leaf node in the zebrafish AO and is not in the CL.
MiD3cl
Hindbrain interneuron, part of rhombomere 6, with one caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron, part of rhombomere 6, with one caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus.
Ceri
2009-06-22T05:13:02Z
TAO:0005196
middle dorsal 3 contralateral mlf interneuron
zebrafish_anatomy
ZFA:0005196
This term is a leaf node in the zebrafish AO and is not in the CL.
MiD3cm
Hindbrain interneuron, part of rhombomere 6, with one caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 6 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral.
Ceri
2009-06-22T05:15:04Z
TAO:0005197
middle dorsal 3 ipsilateral interneuron
zebrafish_anatomy
ZFA:0005197
This term is a leaf node in the zebrafish AO and is not in the CL.
MiD3i
Hindbrain interneuron that is part of rhombomere 6 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 2 with 4 lateral neurons in each hemi-rhombomere.
Ceri
2009-06-26T04:33:20Z
TAO:0005198
rostral lateral 2 interneuron
zebrafish_anatomy
ZFA:0005198
RoL2
Hindbrain interneuron that is part of rhombomere 2 with 4 lateral neurons in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
The rostral RoL2 interneuron that is part of rhombomere 2.
Ceri
2009-06-26T04:48:39Z
TAO:0005199
rostral lateral 2 rostral interneuron
zebrafish_anatomy
ZFA:0005199
RoL2r
The rostral RoL2 interneuron that is part of rhombomere 2.
ZFIN:ZDB-PUB-090217-9
The caudal RoL2 interneuron that is part of rhombomere 2.
Ceri
2009-06-26T04:49:28Z
TAO:0005200
rostral lateral 2 caudal interneuron
zebrafish_anatomy
ZFA:0005200
RoL2c
The caudal RoL2 interneuron that is part of rhombomere 2.
ZFIN:ZDB-PUB-090217-9
Hindbrain interneuron that is part of rhombomere 3 with 1 lateral neuron in each hemi-rhombomere.
Ceri
2009-06-26T05:06:36Z
TAO:0005201
rostral lateral 3 interneuron
zebrafish_anatomy
ZFA:0005201
RoL3
Hindbrain interneuron that is part of rhombomere 3 with 1 lateral neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 1 with one medial-caudal neuron in each hemi-rhombomere.
Ceri
2009-06-26T05:08:26Z
TAO:0005202
rostral medial 1 caudal interneuron
zebrafish_anatomy
ZFA:0005202
RoM1c
Hindbrain interneuron that is part of rhombomere 1 with one medial-caudal neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 1 with one medial-rostral neuron in each hemi-rhombomere.
Ceri
2009-06-26T05:09:50Z
TAO:0005203
rostral medial 1 rostral interneuron
zebrafish_anatomy
ZFA:0005203
RoM1r
Hindbrain interneuron that is part of rhombomere 1 with one medial-rostral neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 3 with three ventral neurons in each hemi-rhombomere.
Ceri
2009-06-29T02:14:08Z
rostral ventral 3 interneuron
zebrafish_anatomy
ZFA:0005204
RoV3
Hindbrain interneuron that is part of rhombomere 3 with three ventral neurons in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 2 with one medial-lateral neuron in each hemi-rhombomere.
Ceri
2009-06-29T02:43:42Z
TAO:0005205
rostral medial 2 lateral interneuron
zebrafish_anatomy
ZFA:0005205
RoM2l
Hindbrain interneuron that is part of rhombomere 2 with one medial-lateral neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 2 with one medial neuron in each hemi-rhombomere.
Ceri
2009-06-29T02:45:01Z
TAO:0005206
rostral medial 2 medial interneuron
zebrafish_anatomy
ZFA:0005206
RoM2m
Hindbrain interneuron that is part of rhombomere 2 with one medial neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 3 with one lateral neuron in each hemi-rhombomere.
Ceri
2009-06-29T02:46:19Z
TAO:0005207
rostral medial 3 lateral interneuron
zebrafish_anatomy
ZFA:0005207
RoM3l
Hindbrain interneuron that is part of rhombomere 3 with one lateral neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 32 with two medial neurons in each hemi-rhombomere.
Ceri
2009-06-29T02:52:04Z
TAO:0005208
zebrafish_anatomy
rostral medial 3 medial interneuron
ZFA:0005208
RoM3m
Hindbrain interneuron that is part of rhombomere 32 with two medial neurons in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Is a CNS interneuron that is part of the hindbrain.
Ceri
2009-07-08T10:21:27Z
TAO:0005209
zebrafish_anatomy
ZFA:0005209
hindbrain interneuron
Is a CNS interneuron that is part of the hindbrain.
GOC:cvs
ORCiD:0000-0002-2244-7917
CNS interneurons located in the midbrain.
Ceri
2009-07-08T11:14:28Z
TAO:0005210
zebrafish_anatomy
ZFA:0005210
midbrain interneuron
CNS interneurons located in the midbrain.
GOC:cvs
ORCiD:0000-0002-2244-7917
Midbrain interneuron in the lateral midbrain.
Ceri
2009-07-08T12:35:19Z
TAO:0005211
mesencephalon lateral interneuron
zebrafish_anatomy
ZFA:0005211
MeL
Midbrain interneuron in the lateral midbrain.
ZFIN:ZDB-PUB-961014-758
Midbrain interneuron located in the medial midbrain. Neuron bodies are part of a cluster.
Ceri
2009-07-08T01:05:12Z
TAO:0005212
mesencephalon medial interneuron
zebrafish_anatomy
ZFA:0005212
MeM
Midbrain interneuron located in the medial midbrain. Neuron bodies are part of a cluster.
ZFIN:ZDB-PUB-961014-758
Midbrain interneuron at the rostral position in the lateral midbrain.
Ceri
2009-07-08T01:26:45Z
TAO:0005213
mesencephalon lateral rostral interneuron
zebrafish_anatomy
ZFA:0005213
MeLr
Midbrain interneuron at the rostral position in the lateral midbrain.
ZFIN:ZDB-PUB-090217-9
Midbrain interneuron at the caudal position in the lateral midbrain.
Ceri
2009-07-08T01:29:37Z
TAO:0005214
mesencephalon lateral caudal interneuron
zebrafish_anatomy
ZFA:0005214
MeLc
Midbrain interneuron at the caudal position in the lateral midbrain.
ZFIN:ZDB-PUB-090217-9
Midbrain interneuron at the medial position in the lateral midbrain.
Ceri
2009-07-09T02:21:45Z
TAO:0005215
mesencephalon lateral medial interneuron
zebrafish_anatomy
ZFA:0005215
MeLm
Midbrain interneuron at the medial position in the lateral midbrain.
ZFIN:ZDB-PUB-090217-9
Midbrain interneuron located in the medial midbrain. The neuron body is positioned away from the MeM cluster.
Ceri
2009-07-09T02:23:47Z
TAO:0005216
mesencephalon medial 1 interneuron
zebrafish_anatomy
ZFA:0005216
MeM1
Midbrain interneuron located in the medial midbrain. The neuron body is positioned away from the MeM cluster.
ZFIN:ZDB-PUB-090217-9
Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere.
Ceri
2009-07-09T02:33:31Z
TAO:0005217
caudal ventral interneuron
zebrafish_anatomy
ZFA:0005217
CaV
Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Hindbrain interneuron that is part of rhombomere 7, with 1 dorsal neuron in each hemi-rhombomere.
Ceri
2009-07-09T02:42:52Z
TAO:0005218
caudal dorsal interneuron
zebrafish_anatomy
ZFA:0005218
CaD
Hindbrain interneuron that is part of rhombomere 7, with 1 dorsal neuron in each hemi-rhombomere.
ZFIN:ZDB-PUB-961014-770
Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus.
Ceri
2009-07-09T02:58:20Z
TAO:0005219
CVC
zebrafish_anatomy
choroid vascular circuit
ZFA:0005219
choroid plexus vascular circuit
Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus.
ZFIN:ZDB-PUB-080908-11
A melanophore stripe that forms the immature pigment pattern.
Ceri
2009-07-09T03:59:45Z
TAO:0005220
zebrafish_anatomy
ZFA:0005220
larval melanophore stripe
A melanophore stripe that forms the immature pigment pattern.
ZFIN:ZDB-PUB-961014-576
A larval melanophore stripe that forms a band extending from the head to the tail along the dorsal apex of the myotomes.
Ceri
2009-07-09T04:04:10Z
TAO:0005221
zebrafish_anatomy
ZFA:0005221
dorsal larval melanophore stripe
A larval melanophore stripe that forms a band extending from the head to the tail along the dorsal apex of the myotomes.
ZFIN:ZDB-PUB-961014-576
A larval melanophore stripe that forms a band, of pigmentation extending from the bases of the eyes on each side of the midline to the top of the tail, that underlies the myotomes bilaterally, still is dorsal to the yolk.
Ceri
2009-07-09T04:05:57Z
TAO:0005222
zebrafish_anatomy
ZFA:0005222
ventral larval melanophore stripe
A larval melanophore stripe that forms a band, of pigmentation extending from the bases of the eyes on each side of the midline to the top of the tail, that underlies the myotomes bilaterally, still is dorsal to the yolk.
ZFIN:ZDB-PUB-961014-576
The larval melanophore stripe that is at the level of the horizontal myoseptum.
Ceri
2009-07-09T04:29:18Z
TAO:0005223
zebrafish_anatomy
ZFA:0005223
lateral larval melanophore stripe
The larval melanophore stripe that is at the level of the horizontal myoseptum.
ZFIN:ZDB-PUB-961014-576
The larval melanophore stripe that forms a band over the ventral surface of the yolk sac.
Ceri
2009-07-09T04:30:34Z
TAO:0005224
zebrafish_anatomy
ZFA:0005224
yolk larval melanophore stripe
The larval melanophore stripe that forms a band over the ventral surface of the yolk sac.
ZFIN:ZDB-PUB-961014-576
Lip that covers the lower portion of the mouth.
Ceri
2009-07-09T04:42:58Z
TAO:0002060
zebrafish_anatomy
ZFA:0005225
lower lip
Lip that covers the lower portion of the mouth.
GOC:cvs
ORCiD:0000-0002-2244-7917
Lip that covers the upper portion of the mouth.
Ceri
2009-07-09T04:43:52Z
TAO:0001970
zebrafish_anatomy
ZFA:0005226
upper lip
Lip that covers the upper portion of the mouth.
GOC:cvs
ORCiD:0000-0002-2244-7917
A group of about 20 cells deposited by the migrating lateral line primordium. A few hours after deposition these cells mature to form the neuromast.
Ceri
2009-07-09T04:49:53Z
TAO:0005227
zebrafish_anatomy
immature neuromast
proto neuromast
proto-neuromast
ZFA:0005227
protoneuromast
A group of about 20 cells deposited by the migrating lateral line primordium. A few hours after deposition these cells mature to form the neuromast.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070907-34
ZFIN:ZDB-PUB-080630-20
true
A portion of tissue that contains the choroid vasculature. It lies at the back of the eye.
Ceri
2009-07-14T02:05:16Z
TAO:0005229
choroid
zebrafish_anatomy
ZFA:0005229
optic choroid
A portion of tissue that contains the choroid vasculature. It lies at the back of the eye.
GOC:cvs
ISBN:1402070861
ORCiD:0000-0002-2244-7917
choroid
ISBN:1402070861
A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally.
Ceri
2009-07-17T01:12:14Z
TAO:0005230
commissural bifurcating longitudinal
zebrafish_anatomy
ZFA:0005230
CoBL
A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally.
ZFIN:ZDB-PUB-010807-17
Is a spinal interneuron that has an axon that splits into roughly equal size branches.
Ceri
2009-07-17T01:22:50Z
TAO:0005231
zebrafish_anatomy
ZFA:0005231
bifurcate interneuron
Is a spinal interneuron that has an axon that splits into roughly equal size branches.
GOC:cvs
ORCiD:0000-0002-2244-7917
A multipolar interneuron with branching dendrites. The axon extend ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally.
Ceri
2009-07-17T03:46:32Z
TAO:0005232
multipolar commissural descending interneuron
zebrafish_anatomy
larval VeLD
ZFA:0005232
MCoD
A multipolar interneuron with branching dendrites. The axon extend ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally.
ZFIN:ZDB-PUB-010807-17
A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch.
Ceri
2009-07-17T03:55:01Z
TAO:0005233
circumferential descending interneuron
commissural descending interneurons
zebrafish_anatomy
V2a interneuron
ZFA:0005233
CiD
A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch.
ZFIN:ZDB-PUB-010807-17
commissural descending interneurons
ZFIN:ZDB-PUB-081114-2
A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch.
Ceri
2009-07-17T04:14:51Z
TAO:0005234
commissural longitudinal ascending interneuron
zebrafish_anatomy
ZFA:0005234
CoLA
A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch.
ZFIN:ZDB-PUB-010807-17
A unipolar spinal interneuron that forms dendritic trunk laterally with extensive dendritic branching. The axon extends ventrally, lateral to the Mauthner axons before crssoing the cord and descending ventrally.
Ceri
2009-07-17T04:26:07Z
TAO:0005235
zebrafish_anatomy
unipolar commissural descending interneuron
ZFA:0005235
UCoD
A unipolar spinal interneuron that forms dendritic trunk laterally with extensive dendritic branching. The axon extends ventrally, lateral to the Mauthner axons before crssoing the cord and descending ventrally.
ZFIN:ZDB-PUB-010807-17
A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared.
Ceri
2009-08-10T05:29:27Z
CL:0000549
TAO:0005236
basophilic normoblast
early erythroblast
prorubricyte
zebrafish_anatomy
early normoblast
ZFA:0005236
basophilic erythroblast
A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared.
ZFIN:ZDB-PUB-070221-1
basophilic normoblast
ZFIN:ZDB-PUB-070221-1
early erythroblast
ZFIN:ZDB-PUB-070221-1
prorubricyte
ZFIN:ZDB-PUB-070221-1
early normoblast
ZFIN:ZDB-PUB-070221-1
A nucleated precursor of an erythrocyte.
Ceri
2009-08-10T05:13:41Z
CL:0000765
TAO:0005237
normoblast
zebrafish_anatomy
ZFA:0005237
erythroblast
A nucleated precursor of an erythrocyte.
ZFIN:ZDB-PUB-070221-1
A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation.
Ceri
2009-08-10T05:41:07Z
CL:0000648
TAO:0005238
kidney granular cell
renin secreting cell
zebrafish_anatomy
ZFA:0005238
juxtaglomerular cell
A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation.
GOC:cvs
GOC:tfm
ORCiD:0000-0002-2244-7917
PMID:11457727
Is a specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg.
Ceri
2009-08-10T06:26:10Z
CL:0007022
TAO:0005239
plug cell
zebrafish_anatomy
ZFA:0005239
micropylar cell
Is a specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg.
ZFIN:ZDB-PUB-080630-14
Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. KA neurons are the dorsal population of CSF-cNs that originate from pMN. The apical extension of dorsal CSF-cNs is more extended along the border of the central canal than for ventral CSF-cNs. Dorsal CSF-cNs contact V0-v cells and project onto CoPA sensory interneuron and respond to lateral bending of the spinal cord.
Ceri
2009-08-11T02:50:27Z
CL:0005007
TAO:0005240
KA cell
KA interneuron
KA neuron
Kolmer-Agduhr cell
dorsal CSF-cN
dorsal CSF-cNs
zebrafish_anatomy
ZFA:0005240
Kolmer-Agduhr neuron
Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. KA neurons are the dorsal population of CSF-cNs that originate from pMN. The apical extension of dorsal CSF-cNs is more extended along the border of the central canal than for ventral CSF-cNs. Dorsal CSF-cNs contact V0-v cells and project onto CoPA sensory interneuron and respond to lateral bending of the spinal cord.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-080825-21
ZFIN:ZDB-PUB-170409-2
KA interneuron
ZFIN:ZDB-PUB-041115-5
KA neuron
ZFIN:ZDB-PUB-980624-10
dorsal CSF-cN
ZFIN:ZDB-PUB-170409-2
dorsal CSF-cNs
ZFIN:ZDB-PUB-170409-2
A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely blue color, but takes on an acidophilic tint, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps.
Ceri
2009-08-11T03:38:32Z
CL:0000550
TAO:0005241
intermediate erythroblast
polychromatic erythroblast
polychromatic normoblast
rubricyte
zebrafish_anatomy
intermediate normoblast
polychromatophilic normoblast
ZFA:0005241
polychromatophilic erythroblast
A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely blue color, but takes on an acidophilic tint, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps.
ZFIN:ZDB-PUB-070221-1
A ciliated epithelial cell with many cilia.
Ceri
2009-08-11T04:29:39Z
ZFA:0009377
CL:0005012
TAO:0005242
multiciliated epithelial cell
zebrafish_anatomy
ZFA:0005242
multi-ciliated epithelial cell
A ciliated epithelial cell with many cilia.
CL:Curator
A ciliated epithelial cell with a single cilium.
Ceri
2009-08-11T04:30:15Z
ZFA:0009378
CL:0005013
TAO:0005243
single-ciliated epithelial cell
zebrafish_anatomy
ZFA:0005243
single ciliated epithelial cell
A ciliated epithelial cell with a single cilium.
CL:curator
A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells.
Ceri
2009-08-11T04:41:03Z
CL:0005014
TAO:0005244
auditory support cell
zebrafish_anatomy
ZFA:0005244
auditory epithelial support cell
A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells.
CL:curator
A non-terminally differentiated cell that originates from the neural crest and differentiates into a xanthophore.
Ceri
2009-08-11T04:53:40Z
ZFA:0005330
CL:0005002
TAO:0002148
zebrafish_anatomy
ZFA:0005245
xanthoblast
A non-terminally differentiated cell that originates from the neural crest and differentiates into a xanthophore.
CL:curator
Is a fibroblast that differentiates from the de-differentiated cells of the blastema.
Ceri
2009-08-12T01:43:26Z
TAO:0005246
blastemal fibroblast
blastemal fibroblasts
zebrafish_anatomy
ZFA:0005246
regeneration fibroblast
Is a fibroblast that differentiates from the de-differentiated cells of the blastema.
GOC:cvs
ORCiD:0000-0002-2244-7917
blastemal fibroblasts
Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord.
Ceri
2009-08-21T04:22:15Z
TAO:0005247
circumferential ascending interneuron
zebrafish_anatomy
V1 interneuron
ZFA:0005247
CiA
Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord.
ZFIN:ZDB-PUB-040625-12
ZFIN:ZDB-PUB-060418-1
Vein segment that connects the PCeVs in the choroid plexus.
Ceri
2009-11-02T04:07:52Z
TAO:0005248
TCB
zebrafish_anatomy
ZFA:0005248
trans-choroid plexus branch
Vein segment that connects the PCeVs in the choroid plexus.
ZFIN:ZDB-PUB-080908-10
TCB
ZFIN:ZDB-PUB-080908-10
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
Ceri
2009-11-10T02:31:54Z
TAO:0001079
TAO:0005249
zebrafish_anatomy
ZFA:0005249
vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
GOC:cvs
ORCiD:0000-0002-2244-7917
Microvessel of the blood circulation system lined with vascular endothelial cells.
Ceri
2009-11-11T01:15:32Z
TAO:0005250
zebrafish_anatomy
ZFA:0005250
capillary
Microvessel of the blood circulation system lined with vascular endothelial cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels.
Ceri
2009-11-11T01:16:24Z
TAO:0005251
zebrafish_anatomy
vasculature
ZFA:0005251
microcirculatory vessel
A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels.
GOC:cvs
ORCiD:0000-0002-2244-7917
Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells.
Ceri
2009-11-11T01:27:39Z
TAO:0005252
zebrafish_anatomy
ZFA:0005252
lymphatic capillary
Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
Simple squamous epithelium that lines the capsule of the renal glomerulus.
Ceri
2009-11-11T01:39:19Z
TAO:0005253
parietal epithelial layer
zebrafish_anatomy
ZFA:0005253
renal glomerular capsule epithelium
Simple squamous epithelium that lines the capsule of the renal glomerulus.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of tissue that encapsulates the glomerulus of the renal corpuscle.
Ceri
2009-11-11T01:45:02Z
TAO:0005254
Bowman's capsule
zebrafish_anatomy
ZFA:0005254
renal glomerular capsule
Portion of tissue that encapsulates the glomerulus of the renal corpuscle.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Multi-tissue structure part of the blood vasculature. Feeds into capillaries. Arterioles carry blood away from the heart.
Ceri
2009-11-11T01:46:54Z
TAO:0002138
zebrafish_anatomy
ZFA:0005255
arteriole
Multi-tissue structure part of the blood vasculature. Feeds into capillaries. Arterioles carry blood away from the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips.
Ceri
2010-01-07T12:26:13Z
TAO:0005256
zebrafish_anatomy
intestinal crypt
ZFA:0005256
intervillus pockets
A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips.
ZFIN:ZDB-PUB-050209-3
intestinal crypt
ZFIN:ZDB-PUB-090217-11
The vascular endothelium that lines blood vasculature.
Ceri
2009-11-11T02:16:38Z
TAO:0005257
zebrafish_anatomy
ZFA:0005257
blood vessel endothelium
The vascular endothelium that lines blood vasculature.
GOC:cvs
ORCiD:0000-0002-2244-7917
The vascular endothelium that lines the lymph vessels.
Ceri
2009-11-11T02:18:09Z
TAO:0005258
zebrafish_anatomy
ZFA:0005258
lymph vessel endothelium
The vascular endothelium that lines the lymph vessels.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel endothelium that has tight junctions between the endothelial cells.
Ceri
2009-11-11T02:19:54Z
TAO:0005259
zebrafish_anatomy
ZFA:0005259
continuous blood vessel endothelium
Blood vessel endothelium that has tight junctions between the endothelial cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel endothelium that has pores that allow passage small molecules and proteins.
Ceri
2009-11-11T02:21:55Z
TAO:0005260
zebrafish_anatomy
ZFA:0005260
fenestrated blood vessel endothelium
Blood vessel endothelium that has pores that allow passage small molecules and proteins.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous.
Ceri
2009-11-11T02:51:27Z
TAO:0005261
zebrafish_anatomy
ZFA:0005261
sinusoidal blood vessel endothelium
Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous.
GOC:cvs
ORCiD:0000-0002-2244-7917
Caudal procurrent ray that is dorsally located on the caudal fin skeleton. There are 6 dorsal procurrent rays in the caudal fin.
Ceri
2009-12-02T02:06:39Z
TAO:0001829
dorsal procurrent caudal-fin ray
zebrafish_anatomy
ZFA:0005262
caudal fin dorsal procurrent ray
Caudal procurrent ray that is dorsally located on the caudal fin skeleton. There are 6 dorsal procurrent rays in the caudal fin.
TAO:curator
ZFIN:ZDB-PUB-031103-13
Caudal procurrent ray that is ventrally located on the caudal fin skeleton. There are 5 ventral procurrent rays in the caudal fin.
Ceri
2009-12-02T02:13:14Z
TAO:0001830
ventral procurrent ray
zebrafish_anatomy
ZFA:0005263
caudal fin ventral procurrent ray
Caudal procurrent ray that is ventrally located on the caudal fin skeleton. There are 5 ventral procurrent rays in the caudal fin.
TAO:curator
ZFIN:ZDB-PUB-031103-13
Ligament that connects the maxilla with the lower jaw.
Ceri
2009-12-02T02:28:51Z
TAO:0001828
articular-maxillary ligament
ligamentum primordiale
maxillo-mandibular ligament
zebrafish_anatomy
ZFA:0005264
primordial ligament
Ligament that connects the maxilla with the lower jaw.
TAO:curator
articular-maxillary ligament
doi:10.1111/j.1096-3642.1964.tb00493.x
Ligament that connects the premaxilla to the maxilla.
Ceri
2009-12-02T02:52:49Z
TAO:0001827
zebrafish_anatomy
ZFA:0005265
premaxillary-maxillary ligament
Ligament that connects the premaxilla to the maxilla.
TAO:curator
Ceri
2009-12-02T04:19:10Z
zebrafish_anatomy
DLF
ZFA:0005266
The DLF in zebrafish is not homologous to the Mammalian DLF. Mammalian DLF is in brain, the fish DLF is in spinal cord.
dorsal longitudinal fasciculus
Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle.
Ceri
2009-12-03T05:15:15Z
TAO:0005267
zebrafish_anatomy
ZFA:0005267
erector muscle
Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle.
GOC:cvs
ORCiD:0000-0002-2244-7917
A muscle that brings a body part closer to the sagittal plane of the body.
Ceri
2009-12-04T12:59:52Z
TAO:0002136
zebrafish_anatomy
ZFA:0005268
adductor muscle
A muscle that brings a body part closer to the sagittal plane of the body.
GOC:cvs
ORCiD:0000-0002-2244-7917
A muscle that moves a body part away from the sagittal plane of the body.
Ceri
2009-12-04T01:05:41Z
TAO:0002135
zebrafish_anatomy
ZFA:0005269
abductor muscle
A muscle that moves a body part away from the sagittal plane of the body.
GOC:cvs
ORCiD:0000-0002-2244-7917
A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle.
Ceri
2009-12-04T01:15:51Z
TAO:0005270
zebrafish_anatomy
ZFA:0005270
depressor muscle
A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle.
GOC:cvs
ORCiD:0000-0002-2244-7917
A muscle that decrease the angle of a joint.
Ceri
2009-12-04T01:20:04Z
TAO:0005271
zebrafish_anatomy
ZFA:0005271
flexor muscle
A muscle that decrease the angle of a joint.
GOC:cvs
ORCiD:0000-0002-2244-7917
Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes.
Ceri
2009-12-09T11:35:20Z
TAO:0005272
juvenile gonad
juvenile ovary
zebrafish_anatomy
ZFA:0005272
immature gonad
Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes.
ZFIN:ZDB-PUB-070305-2
juvenile ovary
ZFIN:ZDB-PUB-070305-2
A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold.
Ceri
2010-01-07T01:36:48Z
TAO:0005273
zebrafish_anatomy
intestinal lamina muscularis mucosae
ZFA:0005273
intestinal mucosal muscle
A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold.
ZFIN:ZDB-PUB-090217-11
intestinal lamina muscularis mucosae
http://www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html
A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs.
Ceri
2010-01-07T02:57:18Z
TAO:0005274
zebrafish_anatomy
ZFA:0005274
smooth muscle
A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fin muscle that is located on the anterior edge of the fin. Arrector muscles change the angle of the leading edge of the fin during swimming.
Ceri
2010-01-07T04:50:10Z
TAO:0002147
zebrafish_anatomy
ZFA:0005275
arrector muscle
Fin muscle that is located on the anterior edge of the fin. Arrector muscles change the angle of the leading edge of the fin during swimming.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ceri
2010-01-07T04:51:38Z
TAO:0005276
zebrafish_anatomy
ZFA:0005276
inclinator muscle
Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.
Ceri
2010-01-07T05:06:51Z
TAO:0005277
zebrafish_anatomy
ZFA:0005277
skeletal muscle
Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.
GOC:cvs
ORCiD:0000-0002-2244-7917
Smooth muscle of the enteric muscle system in which the cells are aligned parallel to the lumen of the gut.
Ceri
2010-01-07T05:48:52Z
zebrafish_anatomy
ZFA:0005278
enteric longitudinal muscle
Smooth muscle of the enteric muscle system in which the cells are aligned parallel to the lumen of the gut.
GOC:cvs
ORCiD:0000-0002-2244-7917
Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut.
Ceri
2010-01-07T05:51:25Z
TAO:0005279
zebrafish_anatomy
ZFA:0005279
enteric circular muscle
Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut.
GOC:cvs
ORCiD:0000-0002-2244-7917
Muscle composed of cardiac muscle cells that is part of the heart.
Ceri
2010-01-07T06:04:03Z
TAO:0005280
zebrafish_anatomy
ZFA:0005280
cardiac muscle
Muscle composed of cardiac muscle cells that is part of the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
The part of the nephron that filters blood.
Ceri
2010-01-19T01:11:46Z
TAO:0005281
Malpighian corpuscle
zebrafish_anatomy
ZFA:0005281
renal corpuscle
The part of the nephron that filters blood.
GOC:cvs
ORCiD:0000-0002-2244-7917
Functional unit of the kidney that filters waste.
Ceri
2010-01-19T02:47:46Z
TAO:0002153
zebrafish_anatomy
ZFA:0005282
nephron
Functional unit of the kidney that filters waste.
GOC:cvs
ORCiD:0000-0002-2244-7917
Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.
Ceri
2010-01-19T02:51:01Z
TAO:0005283
Bowman's space
inter-glomerular space
urinary space
zebrafish_anatomy
ZFA:0005283
renal capsular space
Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.
GOC:cvs
ORCiD:0000-0002-2244-7917
Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level.
Ceri
2010-01-19T03:00:45Z
TAO:0005284
zebrafish_anatomy
ZFA:0005284
glomerular capillary
Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-000824-1
Membrane between the mesonephric podocytes and the renal glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space.
Ceri
2010-01-19T03:26:30Z
TAO:0005285
glomerular filtration membrane
zebrafish_anatomy
ZFA:0005285
glomerular basement membrane
Membrane between the mesonephric podocytes and the renal glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-000824-1
Middle layer of the glomerular basement membrane.
Ceri
2010-01-19T03:52:52Z
TAO:0005286
zebrafish_anatomy
ZFA:0005286
lamina densa
Middle layer of the glomerular basement membrane.
GOC:cvs
ORCiD:0000-0002-2244-7917
Layer of the glomerular basement membrane adjacent to the glomerular capillary.
Ceri
2010-01-19T03:56:00Z
TAO:0005287
zebrafish_anatomy
ZFA:0005287
lamina rara interna
Layer of the glomerular basement membrane adjacent to the glomerular capillary.
GOC:cvs
ORCiD:0000-0002-2244-7917
Layer of the glomerular basement membrane adjacent to the podocytes and capsular space.
Ceri
2010-01-19T03:56:32Z
TAO:0005288
zebrafish_anatomy
ZFA:0005288
lamina rara externa
Layer of the glomerular basement membrane adjacent to the podocytes and capsular space.
GOC:cvs
ORCiD:0000-0002-2244-7917
Tubes in the kidney that collect and transport urine.
Ceri
2010-01-19T04:36:59Z
TAO:0005289
zebrafish_anatomy
ZFA:0005289
renal duct
Tubes in the kidney that collect and transport urine.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-071029-9
Renal tubule that connects to the renal corpuscle.
Ceri
2010-01-20T12:39:12Z
TAO:0005290
zebrafish_anatomy
ZFA:0005290
proximal convoluted tubule
Renal tubule that connects to the renal corpuscle.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of the renal tubule which is just posterior to the proximal convoluted tubule.
Ceri
2010-01-20T12:41:23Z
TAO:0005291
zebrafish_anatomy
ZFA:0005291
proximal straight tubule
Portion of the renal tubule which is just posterior to the proximal convoluted tubule.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of the renal tubule which is just posterior to the distal early tubule.
Ceri
2010-01-20T12:43:22Z
TAO:0005292
zebrafish_anatomy
ZFA:0005292
distal late tubule
Portion of the renal tubule which is just posterior to the distal early tubule.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of the renal tubule which is just posterior to the proximal straight tubule.
Ceri
2010-01-20T12:44:30Z
TAO:0005293
distal early tubules
zebrafish_anatomy
ZFA:0005293
distal early tubule
Portion of the renal tubule which is just posterior to the proximal straight tubule.
GOC:cvs
ORCiD:0000-0002-2244-7917
distal early tubules
Renal duct that collects the output from renal tubules.
Ceri
2010-01-20T01:17:47Z
TAO:0005294
zebrafish_anatomy
ZFA:0005294
collecting duct
Renal duct that collects the output from renal tubules.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel that runs along the rostral-caudal axis of the fish.
Ceri
2010-01-20T02:24:10Z
TAO:0005295
zebrafish_anatomy
ZFA:0005295
axial blood vessel
Blood vessel that runs along the rostral-caudal axis of the fish.
GOC:cvs
ORCiD:0000-0002-2244-7917
Lymph vessel that runs along the rostral-caudal axis of the fish.
Ceri
2010-01-20T02:24:34Z
zebrafish_anatomy
ZFA:0005296
axial lymph vessel
Lymph vessel that runs along the rostral-caudal axis of the fish.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel part of cranial vasculature.
Ceri
2010-01-20T02:25:23Z
TAO:0005297
zebrafish_anatomy
ZFA:0005297
cranial blood vessel
Blood vessel part of cranial vasculature.
GOC:cvs
ORCiD:0000-0002-2244-7917
Lymph vessel that is located in the head.
Ceri
2010-01-20T02:25:47Z
TAO:0005298
zebrafish_anatomy
ZFA:0005298
cranial lymph vessel
Lymph vessel that is located in the head.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel part of fin.
Ceri
2010-01-20T02:52:39Z
TAO:0005299
zebrafish_anatomy
ZFA:0005299
fin blood vessel
Blood vessel part of fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Lymph vessel part of fin.
Ceri
2010-01-20T02:53:08Z
TAO:0005300
zebrafish_anatomy
ZFA:0005300
fin lymph vessel
Lymph vessel part of fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel part of pectoral fin.
Ceri
2010-01-20T02:54:07Z
TAO:0005301
zebrafish_anatomy
ZFA:0005301
pectoral fin blood vessel
Blood vessel part of pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Lymph vessel part of pectoral fin.
Ceri
2010-01-20T02:54:43Z
TAO:0005302
zebrafish_anatomy
ZFA:0005302
pectoral fin lymph vessel
Lymph vessel part of pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Lymph vessel that is located in the caudal fin.
Ceri
2010-01-20T02:55:44Z
TAO:0005303
zebrafish_anatomy
ZFA:0005303
caudal fin lymph vessel
Lymph vessel that is located in the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel located within the caudal fin.
Ceri
2010-01-20T02:55:49Z
TAO:0005304
zebrafish_anatomy
ZFA:0005304
caudal fin blood vessel
Blood vessel located within the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the kidney.
Ceri
2010-01-20T03:02:06Z
TAO:0005305
zebrafish_anatomy
ZFA:0005305
kidney vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the kidney.
GOC:cvs
ORCiD:0000-0002-2244-7917
Blood vessel part of kidney.
Ceri
2010-01-20T03:02:27Z
TAO:0005306
zebrafish_anatomy
ZFA:0005306
kidney blood vessel
Blood vessel part of kidney.
GOC:cvs
ORCiD:0000-0002-2244-7917
Arteriole that carries blood into the glomerular capillaries.
Ceri
2010-01-20T03:02:56Z
TAO:0002139
zebrafish_anatomy
ZFA:0005307
afferent glomerular arteriole
Arteriole that carries blood into the glomerular capillaries.
GOC:cvs
ORCiD:0000-0002-2244-7917
Arteriole that carries blood out of the glomerular capillaries.
Ceri
2010-01-20T03:05:49Z
TAO:0002140
zebrafish_anatomy
ZFA:0005308
efferent glomerular arteriole
Arteriole that carries blood out of the glomerular capillaries.
GOC:cvs
ORCiD:0000-0002-2244-7917
Capillary that is part of the pronephric glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level.
Ceri
2010-01-29T11:29:44Z
TAO:0005309
zebrafish_anatomy
ZFA:0005309
pronephric glomerular capillary
Capillary that is part of the pronephric glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-000824-1
Portion of tissue that encapsulates the glomerulus of the pronephros.
Ceri
2010-01-29T11:39:01Z
TAO:0005310
Bowman's capsule
zebrafish_anatomy
ZFA:0005310
pronephric glomerular capsule
Portion of tissue that encapsulates the glomerulus of the pronephros.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Simple squamous epithelium that lines the capsule of the pronephric glomerulus.
Ceri
2010-01-29T11:40:01Z
TAO:0005311
pronephric parietal epithelial layer
zebrafish_anatomy
ZFA:0005311
pronephric glomerular capsule epithelium
Simple squamous epithelium that lines the capsule of the pronephric glomerulus.
GOC:cvs
ORCiD:0000-0002-2244-7917
Space between the pronephric glomerulus and the pronephric glomerular capsule. Renal filtrate collects here then passes into the pronephric tubule.
Ceri
2010-01-29T11:41:05Z
TAO:0005312
Bowman's space
inter-glomerular space
urinary space
zebrafish_anatomy
ZFA:0005312
pronephric capsular space
Space between the pronephric glomerulus and the pronephric glomerular capsule. Renal filtrate collects here then passes into the pronephric tubule.
GOC:cvs
ORCiD:0000-0002-2244-7917
Membrane between the pronephric podocytes and the pronephric glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space.
Ceri
2010-01-29T11:59:03Z
TAO:0005313
pronephric glomerular filtration membrane
zebrafish_anatomy
ZFA:0005313
pronephric glomerular basement membrane
Membrane between the pronephric podocytes and the pronephric glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-000824-1
Any of the tubular multi-tissue structures through which blood circulates in the body.
Ceri
2010-01-29T02:17:51Z
TAO:0002137
zebrafish_anatomy
ZFA:0005314
blood vessel
Any of the tubular multi-tissue structures through which blood circulates in the body.
vHOG:curator
Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart.
Ceri
2010-01-29T03:29:15Z
TAO:0005315
zebrafish_anatomy
ZFA:0005315
venule
Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold.
Ceri
2010-02-10T02:37:39Z
TAO:0005316
zebrafish_anatomy
fin membrane pectoral fin bud
ZFA:0005316
fin fold pectoral fin bud
Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold.
ZFIN:ZDB-PUB-001101-7
ZFIN:ZDB-PUB-990210-18
The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds.
Ceri
2010-02-10T03:27:29Z
TAO:0005317
pectoral fin membrane
zebrafish_anatomy
ZFA:0005317
pectoral fin fold
The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-990210-18
Ceri
2010-02-10T03:44:48Z
TAO:0005318
zebrafish_anatomy
ZFA:0005318
Does not exist in teleosts. Menke, A.L., Spitsbergen, J.M., Wolterbeek, A.P., and Woutersen, R.A. (2011) Normal Anatomy and Histology of the Adult Zebrafish. Toxicol. Pathol. 39(5): 759-775.
lymph node
true
Lymph vessel that is located between the somites.
Ceri
2010-02-10T05:28:00Z
TAO:0005319
islv
zebrafish_anatomy
ZFA:0005319
intersegmental lymph vessel
Lymph vessel that is located between the somites.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ceri
2010-02-10T05:29:42Z
TAO:0005320
dllv
zebrafish_anatomy
ZFA:0005320
dorsal longitudinal lymphatic vessel
Smooth muscle that is part of the blood vessel wall.
Ceri
2010-02-10T05:39:30Z
TAO:0005321
zebrafish_anatomy
ZFA:0005321
vascular smooth muscle
Smooth muscle that is part of the blood vessel wall.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060216-3
A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts.
Ceri
2010-02-10T06:32:34Z
ZFA:0009373
CL:0005009
TAO:0005322
zebrafish_anatomy
ZFA:0005322
renal principal cell
A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts.
GOC:cvs
ORCiD:0000-0002-2244-7917
Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment.
Ceri
2010-02-22T01:18:18Z
CL:0005006
TAO:0005323
zebrafish_anatomy
ZFA:0005323
ionocyte
Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment.
ZFIN:ZDB-PUB-070625-18
ZFIN:ZDB-PUB-090310-19
Ionocyte located in the gills.
Ceri
2010-02-22T01:22:16Z
TAO:0005324
zebrafish_anatomy
ZFA:0005324
gill ionocyte
Ionocyte located in the gills.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ionocyte located in the integument during embryonic and larval stages.
Ceri
2010-02-22T02:13:14Z
TAO:0005325
skin ionocyte
zebrafish_anatomy
extrabranchial ionocyte
ZFA:0005325
integument ionocyte
Ionocyte located in the integument during embryonic and larval stages.
GOC:cvs
ORCiD:0000-0002-2244-7917
Integument ionocyte rich in Na,K-ATPase.
Ceri
2010-02-22T02:29:17Z
TAO:0005326
zebrafish_anatomy
NaK-MRC
NaR cell
ZFA:0005326
NaK ionocyte
Integument ionocyte rich in Na,K-ATPase.
GOC:cvs
ORCiD:0000-0002-2244-7917
Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase.
Ceri
2010-02-22T02:32:20Z
TAO:0005327
zebrafish_anatomy
HR cell
VH-MRC
ZFA:0005327
vH ionocyte
Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase.
GOC:cvs
ORCiD:0000-0002-2244-7917
A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore.
Ceri
2010-02-22T03:51:51Z
CL:0005001
TAO:0005328
zebrafish_anatomy
ZFA:0005328
iridoblast
A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore.
CL:curator
A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore.
Ceri
2010-02-22T03:51:51Z
CL:0005003
TAO:0005329
zebrafish_anatomy
ZFA:0005329
leucoblast
A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore.
CL:curator
true
A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore.
Ceri
2010-02-22T03:51:51Z
CL:0005004
TAO:0005331
zebrafish_anatomy
ZFA:0005331
pigment erythroblast
A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore.
CL:curator
A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore.
Ceri
2010-02-22T03:51:51Z
CL:0005005
TAO:0005332
zebrafish_anatomy
ZFA:0005332
cyanoblast
A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore.
CL:curator
A multi-tissue mediosagittal cylinder-shaped structure, clearly isolated from the jaw and adhered by differentiated plicae to the lateral walls. It is composed of a muscle surrounded by a squamous epithelium.
Ceri
2010-03-18T03:04:28Z
TAO:0005333
zebrafish_anatomy
ZFA:0005333
tongue
A multi-tissue mediosagittal cylinder-shaped structure, clearly isolated from the jaw and adhered by differentiated plicae to the lateral walls. It is composed of a muscle surrounded by a squamous epithelium.
ZFIN:ZDB-PUB-060921-12
ZFIN:ZDB-PUB-091204-24
The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds.
Ceri
2010-03-18T03:12:14Z
TAO:0005334
zebrafish_anatomy
ZFA:0005334
lip epithelium
The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060921-12
Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder.
Ceri
2010-03-18T03:59:33Z
TAO:0005335
zebrafish_anatomy
ZFA:0005335
swim bladder bud
Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder.
ZFIN:ZDB-PUB-090511-18
ZFIN:ZDB-PUB-100202-11
Portion of the gut endoderm that will eventually develop into the swim bladder.
Ceri
2010-03-18T04:20:42Z
TAO:0005336
zebrafish_anatomy
swim bladder anlage
ZFA:0005336
presumptive swim bladder
Portion of the gut endoderm that will eventually develop into the swim bladder.
ZFIN:ZDB-PUB-090511-18
swim bladder anlage
ZFIN:ZDB-PUB-100202-11
Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder.
Ceri
2010-03-18T04:28:20Z
TAO:0002145
zebrafish_anatomy
ZFA:0005337
anterior swim bladder bud
Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder.
ZFIN:ZDB-PUB-090511-18
Posterior protrusion of the third ventricle.
Ceri
2010-03-18T05:40:53Z
TAO:0005338
posterior recess of diencephalic ventricle
recessus posterior
zebrafish_anatomy
ZFA:0005338
posterior recess
Posterior protrusion of the third ventricle.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
posterior recess of diencephalic ventricle
ZFIN:ZDB-PUB-091221-27
recessus posterior
ZFIN:ZDB-PUB-961014-1280
Is a diencephalic nucleus located in the caudal periventricular hypothalamus surrounding the lateral recess of the third ventricle.
Ceri
2010-03-18T05:52:56Z
TAO:0005339
zebrafish_anatomy
ZFA:0005339
nucleus of the lateral recess
Is a diencephalic nucleus located in the caudal periventricular hypothalamus surrounding the lateral recess of the third ventricle.
ZFIN:ZDB-PUB-091221-27
A diencephalic nucleus that is part of caudal periventricular hypothalmus surrounding the posterior recess of the third ventricle.
Ceri
2010-03-18T05:59:24Z
TAO:0005340
zebrafish_anatomy
ZFA:0005340
nucleus of the posterior recess
A diencephalic nucleus that is part of caudal periventricular hypothalmus surrounding the posterior recess of the third ventricle.
ZFIN:ZDB-PUB-091221-27
CNS white matter tract, major catecholaminergic tract that originates in the diencephalon, passes the locus coeruleus and projects through the hindbrain into the spinal cord. Dopaminergic neurons of the posterior tuberculum and lateral hypothalamus provide the predominant contribution to descending mlct projections.
Ceri
2010-03-18T06:07:36Z
TAO:0005341
medial longitudinal CA tract
mlct
zebrafish_anatomy
ZFA:0005341
medial longitudinal catecholaminergic tract
CNS white matter tract, major catecholaminergic tract that originates in the diencephalon, passes the locus coeruleus and projects through the hindbrain into the spinal cord. Dopaminergic neurons of the posterior tuberculum and lateral hypothalamus provide the predominant contribution to descending mlct projections.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-091221-28
medial longitudinal CA tract
ZFIN:ZDB-PUB-091221-28
CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract.
Ceri
2010-03-18T06:11:28Z
TAO:0002144
zebrafish_anatomy
ZFA:0005342
anterior catecholaminergic tract
CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-091221-28
CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus.
Ceri
2010-03-18T06:13:25Z
TAO:0005343
zebrafish_anatomy
ZFA:0005343
endohypothalamic tract
CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-091221-28
CNS white matter, axonal tract between the preoptic region and ventral diencephalon.
Ceri
2010-03-18T06:14:28Z
TAO:0005344
zebrafish_anatomy
ZFA:0005344
preopticohypothalamic tract
CNS white matter, axonal tract between the preoptic region and ventral diencephalon.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-091221-28
Connective tissue in which fat is stored. All adipose tissue in the zebrafish is white adipose tissue and is comprised of adipocytes, stroma, macrophages and vasculature. Mature adipocytes express adipokines, such as adipsin, adiponectin, and leptin so white adipose tissue is considered an endocrine organ. The connective tissue is loose and infiltrated by a vascular network.
Ceri
2010-03-19T10:04:38Z
TAO:0002134
white adipose tissue
zebrafish_anatomy
ZFA:0005345
adipose tissue
Connective tissue in which fat is stored. All adipose tissue in the zebrafish is white adipose tissue and is comprised of adipocytes, stroma, macrophages and vasculature. Mature adipocytes express adipokines, such as adipsin, adiponectin, and leptin so white adipose tissue is considered an endocrine organ. The connective tissue is loose and infiltrated by a vascular network.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101011-51
Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla.
Ceri
2010-03-19T03:17:51Z
TAO:0005346
zebrafish_anatomy
ZFA:0005346
extrapancreatic duct
Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla.
ZFIN:ZDB-PUB-050623-3
Vertebra that is posteriorly adjacent to vertebra 4.
Ceri
2010-04-21T04:13:30Z
TAO:0001732
zebrafish_anatomy
ZFA:0005347
vertebra 5
Vertebra that is posteriorly adjacent to vertebra 4.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 5.
Ceri
2010-04-21T04:31:28Z
TAO:0001980
zebrafish_anatomy
ZFA:0005348
vertebra 6
Vertebra that is posteriorly adjacent to vertebra 5.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 6.
Ceri
2010-04-21T04:31:47Z
TAO:0001981
zebrafish_anatomy
ZFA:0005349
vertebra 7
Vertebra that is posteriorly adjacent to vertebra 6.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 7.
Ceri
2010-04-21T04:32:12Z
TAO:0001982
zebrafish_anatomy
ZFA:0005350
vertebra 8
Vertebra that is posteriorly adjacent to vertebra 7.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 8.
Ceri
2010-04-21T04:32:37Z
TAO:0002149
zebrafish_anatomy
ZFA:0005351
vertebra 9
Vertebra that is posteriorly adjacent to vertebra 8.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib.
Ceri
2010-04-21T04:33:09Z
TAO:0002152
zebrafish_anatomy
ZFA:0005352
vertebra 12
Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib.
ZFIN:ZDB-PUB-020807-1
Vertebra that is posteriorly adjacent to vertebra 9.
Ceri
2010-04-21T04:33:57Z
TAO:0002150
zebrafish_anatomy
ZFA:0005353
vertebra 10
Vertebra that is posteriorly adjacent to vertebra 9.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 10.
Ceri
2010-04-21T04:34:16Z
TAO:0002151
zebrafish_anatomy
ZFA:0005354
vertebra 11
Vertebra that is posteriorly adjacent to vertebra 10.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
First lepidotrichium of dorsal fin.
Ceri
2010-04-22T05:26:13Z
TAO:0001754
dorsal fin ray 1
zebrafish_anatomy
ZFA:0005355
dorsal fin lepidotrichium 1
First lepidotrichium of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Second lepidotrichium of dorsal fin.
Ceri
2010-04-22T05:28:14Z
TAO:0001755
dorsal fin ray 2
zebrafish_anatomy
ZFA:0005356
dorsal fin lepidotrichium 2
Second lepidotrichium of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Third lepidotrichium of dorsal fin.
Ceri
2010-04-22T05:28:28Z
TAO:0001756
dorsal fin ray 3
zebrafish_anatomy
ZFA:0005357
dorsal fin lepidotrichium 3
Third lepidotrichium of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fourth lepidotrichium of dorsal fin.
Ceri
2010-04-22T05:29:09Z
TAO:0001757
dorsal fin ray 4
zebrafish_anatomy
ZFA:0005358
dorsal fin lepidotrichium 4
Fourth lepidotrichium of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fifth lepidotrichium of dorsal fin.
Ceri
2010-04-22T05:29:18Z
TAO:0001758
dorsal fin ray 5
zebrafish_anatomy
ZFA:0005359
dorsal fin lepidotrichium 5
Fifth lepidotrichium of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Sixth lepidotrichium of dorsal fin.
Ceri
2010-04-22T05:29:33Z
TAO:0001759
dorsal fin ray 6
zebrafish_anatomy
ZFA:0005360
dorsal fin lepidotrichium 6
Sixth lepidotrichium of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Seventh lepidotrichium of dorsal fin.
Ceri
2010-04-22T05:29:52Z
TAO:0001760
dorsal fin ray 7
zebrafish_anatomy
ZFA:0005361
dorsal fin lepidotrichium 7
Seventh lepidotrichium of dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
First proximal radial of the dorsal fin.
Ceri
2010-04-22T05:39:57Z
TAO:0001818
zebrafish_anatomy
ZFA:0005362
dorsal fin proximal radial 1
First proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Second proximal radial of the dorsal fin.
Ceri
2010-04-22T05:40:13Z
TAO:0001819
zebrafish_anatomy
ZFA:0005363
dorsal fin proximal radial 2
Second proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Dorsal fin pterygiophore that is the rostralmost pterygiophore of the dorsal fin.
Ceri
2010-04-22T05:47:57Z
TAO:0002094
dorsal fin radial 1
zebrafish_anatomy
ZFA:0005364
dorsal fin pterygiophore 1
Dorsal fin pterygiophore that is the rostralmost pterygiophore of the dorsal fin.
TAO:curator
Dorsal fin pterygiophore that is caudal to pterygiophore 1 of the dorsal fin.
Ceri
2010-04-22T05:48:12Z
TAO:0005365
dorsal fin radial 2
zebrafish_anatomy
ZFA:0005365
dorsal fin pterygiophore 2
Dorsal fin pterygiophore that is caudal to pterygiophore 1 of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Dorsal fin pterygiophore that is caudal to pterygiophore 2 of the dorsal fin.
Ceri
2010-04-22T05:48:36Z
TAO:0005366
dorsal fin radial 3
zebrafish_anatomy
ZFA:0005366
dorsal fin pterygiophore 3
Dorsal fin pterygiophore that is caudal to pterygiophore 2 of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
Dorsal fin pterygiophore that is caudal to pterygiophore 3 of the dorsal fin. One of the two first radials to ossify.
Ceri
2010-04-22T05:48:48Z
TAO:0005367
dorsal fin radial 4
zebrafish_anatomy
ZFA:0005367
dorsal fin pterygiophore 4
Dorsal fin pterygiophore that is caudal to pterygiophore 3 of the dorsal fin. One of the two first radials to ossify.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
Dorsal fin pterygiophore that is caudal to pterygiophore 4 of the dorsal fin. One of the two first radials to ossify.
Ceri
2010-04-22T05:49:00Z
TAO:0005368
dorsal fin radial 5
zebrafish_anatomy
ZFA:0005368
dorsal fin pterygiophore 5
Dorsal fin pterygiophore that is caudal to pterygiophore 4 of the dorsal fin. One of the two first radials to ossify.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
Dorsal fin pterygiophore that is caudal to pterygiophore 5 of the dorsal fin.
Ceri
2010-04-22T05:49:26Z
TAO:0005369
dorsal fin radial 6
zebrafish_anatomy
ZFA:0005369
dorsal fin pterygiophore 6
Dorsal fin pterygiophore that is caudal to pterygiophore 5 of the dorsal fin.
ZFIN:ZDB-PUB-031103-13
Dorsal fin pterygiophore that is caudal to pterygiophore 6 of the dorsal fin.
Ceri
2010-04-22T05:49:39Z
TAO:0005370
dorsal fin radial 7
zebrafish_anatomy
ZFA:0005370
dorsal fin pterygiophore 7
Dorsal fin pterygiophore that is caudal to pterygiophore 6 of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
Dorsal fin pterygiophore that is caudal to pterygiophore 7 of the dorsal fin. The most caudal pterygiophore of the dorsal fin.
Ceri
2010-04-22T05:53:09Z
TAO:0005371
dorsal fin radial 8
zebrafish_anatomy
ZFA:0005371
dorsal fin pterygiophore 8
Dorsal fin pterygiophore that is caudal to pterygiophore 7 of the dorsal fin. The most caudal pterygiophore of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-031103-13
First distal radial of the dorsal fin.
Ceri
2010-04-22T05:54:49Z
TAO:0005372
zebrafish_anatomy
ZFA:0005372
dorsal fin distal radial 1
First distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Second distal radial of the dorsal fin.
Ceri
2010-04-22T05:55:31Z
TAO:0005373
zebrafish_anatomy
ZFA:0005373
dorsal fin distal radial 2
Second distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Third distal radial of the dorsal fin.
Ceri
2010-04-22T05:57:11Z
TAO:0005374
zebrafish_anatomy
ZFA:0005374
dorsal fin distal radial 3
Third distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fourth distal radial of the dorsal fin.
Ceri
2010-04-22T05:57:21Z
TAO:0005375
zebrafish_anatomy
ZFA:0005375
dorsal fin distal radial 4
Fourth distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fifth distal radial of the dorsal fin.
Ceri
2010-04-22T05:57:32Z
TAO:0005376
zebrafish_anatomy
ZFA:0005376
dorsal fin distal radial 5
Fifth distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Sixth distal radial of the dorsal fin.
Ceri
2010-04-22T05:57:48Z
TAO:0005377
zebrafish_anatomy
ZFA:0005377
dorsal fin distal radial 6
Sixth distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Seventh distal radial of the dorsal fin.
Ceri
2010-04-22T05:58:04Z
TAO:0005378
zebrafish_anatomy
ZFA:0005378
dorsal fin distal radial 7
Seventh distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Eighth distal radial of the dorsal fin.
Ceri
2010-04-22T05:58:19Z
TAO:0005379
zebrafish_anatomy
ZFA:0005379
dorsal fin distal radial 8
Eighth distal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Third proximal radial of the dorsal fin.
Ceri
2010-04-22T05:58:39Z
TAO:0005380
zebrafish_anatomy
ZFA:0005380
dorsal fin proximal radial 3
Third proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fourth proximal radial of the dorsal fin.
Ceri
2010-04-22T05:59:08Z
TAO:0005381
zebrafish_anatomy
ZFA:0005381
dorsal fin proximal radial 4
Fourth proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fifth proximal radial of the dorsal fin.
Ceri
2010-04-22T05:59:20Z
TAO:0005382
zebrafish_anatomy
ZFA:0005382
dorsal fin proximal radial 5
Fifth proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Sixth proximal radial of the dorsal fin.
Ceri
2010-04-22T05:59:30Z
TAO:0005383
zebrafish_anatomy
ZFA:0005383
dorsal fin proximal radial 6
Sixth proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Seventh proximal radial of the dorsal fin.
Ceri
2010-04-22T05:59:42Z
TAO:0005384
zebrafish_anatomy
ZFA:0005384
dorsal fin proximal radial 7
Seventh proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Eighth proximal radial of the dorsal fin.
Ceri
2010-04-22T05:59:54Z
TAO:0005385
zebrafish_anatomy
ZFA:0005385
dorsal fin proximal radial 8
Eighth proximal radial of the dorsal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves.
Ceri
2010-04-23T11:01:27Z
TAO:0001736
foramina
zebrafish_anatomy
ZFA:0005386
foramen
Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves.
TAO:curator
foramina
Foramen in the occipital region of neurocranium to allow passage of spinal cord.
Ceri
2010-04-23T11:02:49Z
TAO:0002045
zebrafish_anatomy
ZFA:0005387
foramen magnum
Foramen in the occipital region of neurocranium to allow passage of spinal cord.
TAO:curator
Anatomical space that is a concavity, shallow depression, or groove on a bone.
Ceri
2010-04-23T11:04:59Z
TAO:0001743
zebrafish_anatomy
ZFA:0005388
fossa
Anatomical space that is a concavity, shallow depression, or groove on a bone.
TAO:curator
Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head.
Ceri
2010-04-23T11:06:34Z
TAO:0002057
zebrafish_anatomy
ZFA:0005389
gill opening
Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head.
TAO:curator
Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage.
Ceri
2010-04-23T11:17:01Z
TAO:0001856
zebrafish_anatomy
ZFA:0005390
gill ray
Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage.
TAO:curator
Lateral line system on head and pectoral girdle.
Ceri
2010-04-23T01:42:45Z
TAO:0001873
zebrafish_anatomy
ZFA:0005391
head sensory canal system
Lateral line system on head and pectoral girdle.
TAO:WD
Sensory canal associated with the infraorbital bones. Located in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired. The canal has 3 pores. The first opens dorsally below the nasal sac, the second opens laterally posterior to the anterior maxilary barbel, the third pore is present where infraorbital 1 meets infraorbital 2.
Ceri
2010-04-23T01:44:27Z
TAO:0001811
zebrafish_anatomy
ZFA:0005392
infraorbital sensory canal
Sensory canal associated with the infraorbital bones. Located in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired. The canal has 3 pores. The first opens dorsally below the nasal sac, the second opens laterally posterior to the anterior maxilary barbel, the third pore is present where infraorbital 1 meets infraorbital 2.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired.
Ceri
2010-04-23T01:45:04Z
TAO:0001629
zebrafish_anatomy
ZFA:0005393
otic sensory canal
Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired.
TAO:curator
Sensory canal that forms dorsal to the horizontal semicircular canal of the ear. The anterior end of the canal may span or remain posterior to the pterotic-sphenotic junction. The posterior end of the postotic canal meets the temporal and supratemporal canals. The canal lies between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired and when mature is fully enclosed in bone.
Ceri
2010-04-23T01:45:48Z
TAO:0001619
postotic sensory canal
zebrafish_anatomy
ZFA:0005394
post-otic sensory canal
Sensory canal that forms dorsal to the horizontal semicircular canal of the ear. The anterior end of the canal may span or remain posterior to the pterotic-sphenotic junction. The posterior end of the postotic canal meets the temporal and supratemporal canals. The canal lies between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired and when mature is fully enclosed in bone.
TAO:curator
ZFIN:ZDB-PUB-961014-192
postotic sensory canal
ZFIN:ZDB-PUB-961014-192
Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones.
Ceri
2010-04-23T01:59:39Z
TAO:0001812
zebrafish_anatomy
ZFA:0005395
preoperculo-mandibular sensory canal
Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones.
TAO:curator
Sensory canal contained in the nasal and frontal bones. It contains 4 or 5 neuromast. The first neuromast is positioned in the tubular nasal bone and the other neuromasts are located in the frontal bone. The canal is anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired.
Ceri
2010-04-23T02:00:48Z
TAO:0001810
zebrafish_anatomy
ZFA:0005396
supraorbital sensory canal
Sensory canal contained in the nasal and frontal bones. It contains 4 or 5 neuromast. The first neuromast is positioned in the tubular nasal bone and the other neuromasts are located in the frontal bone. The canal is anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired.
TAO:curator
ZFIN:ZDB-PUB-031103-11
Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2.
Ceri
2010-04-23T02:54:34Z
TAO:0002010
zebrafish_anatomy
ZFA:0005397
hyoideomandibular nerve
Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2.
TAO:curator
Actinotrichium that is part of the anal fin skeleton.
Ceri
2010-04-23T04:54:17Z
TAO:0000375
anal fin actinotricia
zebrafish_anatomy
ZFA:0005398
anal fin actinotrichium
Actinotrichium that is part of the anal fin skeleton.
TAO:curator
anal fin actinotricia
First lepidotrichium of anal fin.
Ceri
2010-04-23T04:57:18Z
TAO:0001769
zebrafish_anatomy
ZFA:0005399
anal fin lepidotrichium 1
First lepidotrichium of anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Second lepidotrichium of anal fin.
Ceri
2010-04-23T04:57:31Z
TAO:0001770
zebrafish_anatomy
ZFA:0005400
anal fin lepidotrichium 2
Second lepidotrichium of anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Third epidotrichium of anal fin.
Ceri
2010-04-23T04:57:43Z
TAO:0001771
zebrafish_anatomy
ZFA:0005401
anal fin lepidotrichium 3
Third epidotrichium of anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fourth lepidotrichium of anal fin.
Ceri
2010-04-23T04:57:55Z
TAO:0001772
zebrafish_anatomy
ZFA:0005402
anal fin lepidotrichium 4
Fourth lepidotrichium of anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fifth lepidotrichium of anal fin.
Ceri
2010-04-23T04:58:07Z
TAO:0001773
zebrafish_anatomy
ZFA:0005403
anal fin lepidotrichium 5
Fifth lepidotrichium of anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Sixth lepidotrichium of anal fin.
Ceri
2010-04-23T04:58:19Z
TAO:0001774
zebrafish_anatomy
ZFA:0005404
anal fin lepidotrichium 6
Sixth lepidotrichium of anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Seventh lepidotrichium of anal fin.
Ceri
2010-04-23T04:58:32Z
TAO:0001775
zebrafish_anatomy
ZFA:0005405
anal fin lepidotrichium 7
Seventh lepidotrichium of anal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature.
Ceri
2010-04-23T05:11:17Z
TAO:0001927
zebrafish_anatomy
ZFA:0005406
Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-100614-560 correct Dbxref ZDB-ANAT-100614-60.
anterior myodome
Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature.
TAO:curator
Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired.
Ceri
2010-04-23T05:12:00Z
TAO:0001937
zebrafish_anatomy
ZFA:0005407
anterior nasal barbel
Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired.
TAO:curator
Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired. Maxillary barbel has considerable range of motion, with contraction and protraction motivated by maxillary blood sinus. The maxillary barbel integument has taste buds. Capable of regeneration.
Ceri
2010-04-23T05:13:52Z
TAO:0001938
ZMB
zebrafish_anatomy
ZFA:0005408
maxillary barbel
Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired. Maxillary barbel has considerable range of motion, with contraction and protraction motivated by maxillary blood sinus. The maxillary barbel integument has taste buds. Capable of regeneration.
GOC:ymb
ORCiD:0000-0002-9900-7880
TAO:WD
ZFIN:ZDB-PUB-140816-6
ZMB
ZFIN:ZDB-PUB-140813-6
The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle.
ceri
2010-05-17T10:43:19Z
TAO:0005409
zebrafish_anatomy
ZFA:0005409
pars superior ear
The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
The ventral portion of the ear. It contains the saccule and the lagena which are the primary auditory organs.
ceri
2010-05-17T10:51:56Z
TAO:0005410
zebrafish_anatomy
ZFA:0005410
pars inferior ear
The ventral portion of the ear. It contains the saccule and the lagena which are the primary auditory organs.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Duct that forms when the nonampullary ends of the posterior and anterior semicircular canals merge. The common crus descends connecting the semicircular canals to the horizontal canal.
ceri
2010-05-17T11:03:13Z
TAO:0005411
zebrafish_anatomy
ZFA:0005411
common crus
Duct that forms when the nonampullary ends of the posterior and anterior semicircular canals merge. The common crus descends connecting the semicircular canals to the horizontal canal.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-7
ZFIN:ZDB-PUB-020403-4
Duct that crosses the midline connecting the sacculi.
ceri
2010-05-17T03:08:14Z
TAO:0005412
zebrafish_anatomy
ZFA:0005412
transverse canal
Duct that crosses the midline connecting the sacculi.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Portion of organism substance that is an extracellular fluid that has a low potassium concentration.
ceri
2010-05-17T03:11:11Z
TAO:0005413
zebrafish_anatomy
ZFA:0005413
perilymph
Portion of organism substance that is an extracellular fluid that has a low potassium concentration.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010912-7
The portion of organism substance that is an extracellular fluid that has a high potassium and sodium concentration. It bathes the hair cells and is thought to be generated by the semicircular canal epithelium.
ceri
2010-05-17T03:11:30Z
TAO:0005414
zebrafish_anatomy
ZFA:0005414
endolymph
The portion of organism substance that is an extracellular fluid that has a high potassium and sodium concentration. It bathes the hair cells and is thought to be generated by the semicircular canal epithelium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090731-6
Foramen in the inner ear.
ceri
2010-05-18T11:11:52Z
TAO:0005415
zebrafish_anatomy
ZFA:0005415
inner ear foramen
Foramen in the inner ear.
GOC:cvs
ORCiD:0000-0002-2244-7917
Inner ear foramen that connects the lagena to the caudal half of the saccule.
ceri
2010-05-19T07:13:29Z
TAO:0005416
zebrafish_anatomy
ZFA:0005416
sacculoagenar foramen
Inner ear foramen that connects the lagena to the caudal half of the saccule.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-020403-4
Inner ear foramen that connects the rostral saccula to the utricle.
ceri
2010-05-19T07:15:09Z
zebrafish_anatomy
ZFA:0005417
utriculosaccular foramen
Inner ear foramen that connects the rostral saccula to the utricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-020403-4
Opening in the neurocranium to allow communication between the swim bladder and the inner ear.
Ceri
2010-05-25T05:28:33Z
TAO:0002066
auditory fenestrae
zebrafish_anatomy
ZFA:0005418
auditory fenestra
Opening in the neurocranium to allow communication between the swim bladder and the inner ear.
TAO:curator
auditory fenestrae
Foramen through which cranial nerve VIII (auditory) exits.
Ceri
2010-05-25T05:29:43Z
TAO:0001742
zebrafish_anatomy
ZFA:0005419
auditory foramen
Foramen through which cranial nerve VIII (auditory) exits.
TAO:curator
Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired.
Ceri
2010-05-25T05:31:28Z
TAO:0001608
zebrafish_anatomy
ZFA:0005420
autopalatine-lateral ethmoid joint
Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired.
TAO:curator
Joint that articulates the autopalatine cartilage or bone and maxilla.
Ceri
2010-05-25T05:32:51Z
TAO:0001942
zebrafish_anatomy
ZFA:0005421
autopalatine-maxillary joint
Joint that articulates the autopalatine cartilage or bone and maxilla.
TAO:curator
Joint that articulates autopalatine and vomer bones. Autopalatine vomer joint is paired.
Ceri
2010-05-25T05:34:03Z
TAO:0001784
zebrafish_anatomy
ZFA:0005422
autopalatine-vomer joint
Joint that articulates autopalatine and vomer bones. Autopalatine vomer joint is paired.
TAO:curator
Joint that articulates the basioccipital and exoccipital. Basioccipital exoccipital joint is paired.
Ceri
2010-05-25T05:55:17Z
TAO:0002038
zebrafish_anatomy
ZFA:0005423
basioccipital-exoccipital joint
Joint that articulates the basioccipital and exoccipital. Basioccipital exoccipital joint is paired.
TAO:curator
Actinotrichium that is part of the caudal fin skeleton.
Ceri
2010-05-25T06:07:35Z
TAO:0000437
caudal fin actinotrichia
zebrafish_anatomy
ZFA:0005424
caudal fin actinotrichium
Actinotrichium that is part of the caudal fin skeleton.
TAO:curator
caudal fin actinotrichia
A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer.
Ceri
2010-05-26T10:36:36Z
TAO:0005425
zebrafish_anatomy
ZFA:0005425
serous membrane
A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer.
http://en.wikipedia.org/wiki/Serous_membrane
Foramen that is located in the coracoid.
Ceri
2010-05-26T01:35:35Z
TAO:0001737
zebrafish_anatomy
ZFA:0005426
coracoid foramen
Foramen that is located in the coracoid.
TAO:curator
Foramen located on the dentary for passage of the mandibular nerve.
Ceri
2010-05-26T01:36:29Z
TAO:0002012
zebrafish_anatomy
ZFA:0005427
dentary foramen
Foramen located on the dentary for passage of the mandibular nerve.
TAO:curator
Foramen in the orbital region of the neurocranium for the passage of the optic nerve (cranial nerve II).
Ceri
2010-05-26T02:34:08Z
TAO:0002025
optic nerve (II) foramen
zebrafish_anatomy
ZFA:0005428
optic foramen
Foramen in the orbital region of the neurocranium for the passage of the optic nerve (cranial nerve II).
TAO:curator
optic nerve (II) foramen
ZFIN:ZDB-PUB-961014-192
Foramen for the passage of the olfactory nerve or cranial nerve 1.
Ceri
2010-05-26T02:35:17Z
TAO:0001804
zebrafish_anatomy
ZFA:0005429
olfactory nerve foramen
Foramen for the passage of the olfactory nerve or cranial nerve 1.
TAO:curator
Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal).
Ceri
2010-05-26T02:36:02Z
TAO:0002031
zebrafish_anatomy
ZFA:0005430
orbital foramen
Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal).
TAO:curator
Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone.
Ceri
2010-05-26T02:37:13Z
TAO:0001735
zebrafish_anatomy
ZFA:0005431
scapular foramen
Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone.
TAO:curator
Foramen through which the superficial ophthalmic nerve passes.
Ceri
2010-05-26T02:38:20Z
TAO:0001748
zebrafish_anatomy
ZFA:0005432
superficial ophthalmic nerve foramen
Foramen through which the superficial ophthalmic nerve passes.
TAO:curator
Barbel that originates on the chin.
Ceri
2010-05-26T05:43:41Z
TAO:0002024
zebrafish_anatomy
ZFA:0005433
mental barbel
Barbel that originates on the chin.
TAO:curator
Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth.
Ceri
2010-05-26T06:11:37Z
TAO:0001973
zebrafish_anatomy
ZFA:0005434
tooth cusp
Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth.
TAO:curator
Skeletal element which is a slender, horny, flexible, unsegmented fibril which provide structural support to fin folds or fins. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine.
Ceri
2010-06-08T04:31:42Z
TAO:0000089
actinotrichia
zebrafish_anatomy
ZFA:0005435
actinotrichium
Skeletal element which is a slender, horny, flexible, unsegmented fibril which provide structural support to fin folds or fins. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine.
GOC:cvs
ORCiD:0000-0002-2244-7917
actinotrichia
Nerve that is part of the pectoral fin.
Ceri
2010-06-20T10:18:37Z
zebrafish_anatomy
ZFA:0005436
pectoral fin nerve
Nerve that is part of the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Motor nerve that is located in the pectoral fin.
Ceri
2010-06-20T10:19:45Z
zebrafish_anatomy
ZFA:0005437
pectoral fin motor nerve
Motor nerve that is located in the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070726-9
Sensory nerve that innervates the pectoral fin.
Ceri
2010-06-20T10:21:38Z
zebrafish_anatomy
ZFA:0005438
pectoral fin sensory nerve
Sensory nerve that innervates the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070726-9
Pectoral fin motor nerve that enters the fin from the dorsal side of the fin rostral of all other motor nerves and innervates the dorsal side of the pectoral fin.
Ceri
2010-06-20T10:22:40Z
zebrafish_anatomy
ZFA:0005439
pectoral fin motor nerve 1
Pectoral fin motor nerve that enters the fin from the dorsal side of the fin rostral of all other motor nerves and innervates the dorsal side of the pectoral fin.
ZFIN:ZDB-PUB-070726-9
Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and rostral of all other motor nerves and innervates the dorsal side of the pectoral fin.
Ceri
2010-06-20T10:27:40Z
zebrafish_anatomy
ZFA:0005440
pectoral fin motor nerve 2
Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and rostral of all other motor nerves and innervates the dorsal side of the pectoral fin.
ZFIN:ZDB-PUB-070726-9
Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and 2 and rostral of nerve 4 and innervates the dorsal side of the pectoral fin.
Ceri
2010-06-20T10:28:55Z
zebrafish_anatomy
ZFA:0005441
pectoral fin motor nerve 3
Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and 2 and rostral of nerve 4 and innervates the dorsal side of the pectoral fin.
ZFIN:ZDB-PUB-070726-9
Fossa of opercle that articulates with hyomandibular condyle for opercle.
Ceri
2010-06-24T02:57:49Z
TAO:0001928
zebrafish_anatomy
ZFA:0005442
articular fossa of opercle
Fossa of opercle that articulates with hyomandibular condyle for opercle.
TAO:curator
Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromasts.
Ceri
2010-06-24T05:31:47Z
TAO:0001612
zebrafish_anatomy
ZFA:0005443
sensory canal
Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromasts.
TAO:curator
Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to the caudal fin. The trunk sensory canal is bilaterally paired.
Ceri
2010-06-24T05:39:49Z
TAO:0001617
zebrafish_anatomy
ZFA:0005444
trunk sensory canal
Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to the caudal fin. The trunk sensory canal is bilaterally paired.
TAO:curator
Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired.
Ceri
2010-06-25T10:45:28Z
TAO:0001630
zebrafish_anatomy
ZFA:0005445
supratemporal sensory canal
Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired.
TAO:curator
Foramen in a bone that is part of a sensory canal.
Ceri
2010-06-28T10:26:50Z
zebrafish_anatomy
ZFA:0005446
neuromast foramen
Foramen in a bone that is part of a sensory canal.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so.
Ceri
2010-06-25T10:46:49Z
TAO:0001933
zebrafish_anatomy
ZFA:0005447
sensory canal tubule
Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so.
TAO:curator
Sensory canal associated with the preopercle bone. It lies in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired.
Ceri
2010-06-25T10:58:48Z
TAO:0001813
zebrafish_anatomy
ZFA:0005448
preopercular sensory canal
Sensory canal associated with the preopercle bone. It lies in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space.
Ceri
2010-06-28T11:08:35Z
TAO:0001791
zebrafish_anatomy
ZFA:0005449
pore
An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space.
TAO:curator
Pectoral fin motor nerve that enters the fin from the ventral side of the fin and innervates the ventral side of the pectoral fin.
Ceri
2010-06-28T01:47:43Z
zebrafish_anatomy
ZFA:0005450
pectoral fin motor nerve 4
Pectoral fin motor nerve that enters the fin from the ventral side of the fin and innervates the ventral side of the pectoral fin.
ZFIN:ZDB-PUB-070726-9
Sensory canal associated with the angular and dentary bones. Located anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and does not meet at the mandibular symphysis. The mandibular lateral line canal has 3 neuromast located between the canal pores. Two neuromast are located in the portion of the can in the dentary bone. The third neuromast is located in the anguloarticular bone. The rostral end of the canal has a terminal pore adjacent to the mandibular symphysis. There are three more pores, two, at the posterior of the dentary and the anterior of the anguloarticular share a common epithelial pore.
Ceri
2010-06-25T12:27:58Z
TAO:0001814
zebrafish_anatomy
ZFA:0005451
mandibular sensory canal
Sensory canal associated with the angular and dentary bones. Located anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and does not meet at the mandibular symphysis. The mandibular lateral line canal has 3 neuromast located between the canal pores. Two neuromast are located in the portion of the can in the dentary bone. The third neuromast is located in the anguloarticular bone. The rostral end of the canal has a terminal pore adjacent to the mandibular symphysis. There are three more pores, two, at the posterior of the dentary and the anterior of the anguloarticular share a common epithelial pore.
TAO:curator
ZFIN:ZDB-PUB-031103-11
Tract which originates from several clusters of cell bodies in the rostral midbrain, the anterior tegmentum and the nucleus of the posterior commissure. The neurons that are part of the nucleus of the posterior commissure have axons which course ventrally toward the anterior tegmentum, while the ventral tegmental clusters of neurons have axons which course dorsally along the posterior commissure and cross the dorsal midline to the contralateral side they then turn posteriorly and extend to the posterior region of the tegmentum and eventually into the hindbrain via the tract of the postoptic commissure. .
Ceri
2010-07-21T01:49:43Z
tract of the posterior commissure
zebrafish_anatomy
TPC
ZFA:0005452
tract of the caudal commissure
Tract which originates from several clusters of cell bodies in the rostral midbrain, the anterior tegmentum and the nucleus of the posterior commissure. The neurons that are part of the nucleus of the posterior commissure have axons which course ventrally toward the anterior tegmentum, while the ventral tegmental clusters of neurons have axons which course dorsally along the posterior commissure and cross the dorsal midline to the contralateral side they then turn posteriorly and extend to the posterior region of the tegmentum and eventually into the hindbrain via the tract of the postoptic commissure. .
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1268
ZFIN:ZDB-PUB-961014-167
tract of the posterior commissure
ZFIN:ZDB-PUB-961014-421
TPC
ZFIN:ZDB-PUB-961014-1268
Opening in the prootic. The basicapsular fenestra is paired.
Ceri
2010-06-25T05:40:06Z
basicapsular fenestrae
zebrafish_anatomy
ZFA:0005453
basicapsular fenestra
Opening in the prootic. The basicapsular fenestra is paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
basicapsular fenestrae
Fossa where the anteromedial rim is formed by the prootic, the remainder of the fossa is formed by the exoccipital and pterotic.
Ceri
2010-06-25T05:47:28Z
TAO:0001974
zebrafish_anatomy
ZFA:0005454
subtemporal fossa
Fossa where the anteromedial rim is formed by the prootic, the remainder of the fossa is formed by the exoccipital and pterotic.
ZFIN:ZDB-PUB-961014-192
Foramen formed between the anterolateral extension of the prootic that contacts the pterosphenoid the prootic and the pterosphenoid.
Ceri
2010-06-25T05:53:27Z
anterior trigemino-facialis foramen of Howes
trigeminal notch of Harrington
zebrafish_anatomy
ZFA:0005455
prootic foramen
Foramen formed between the anterolateral extension of the prootic that contacts the pterosphenoid the prootic and the pterosphenoid.
ZFIN:ZDB-PUB-961014-192
Perilymphatic compartment of the zebrafish ear. Chamber positioned ventral of the medulla, the anterior end surrounds the posterior portion of the transverse canal.
Ceri
2010-07-21T02:01:50Z
zebrafish_anatomy
ZFA:0005456
sinus impar
Perilymphatic compartment of the zebrafish ear. Chamber positioned ventral of the medulla, the anterior end surrounds the posterior portion of the transverse canal.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-7
Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired.
Ceri
2010-07-21T02:02:25Z
TAO:0001847
zebrafish_anatomy
ZFA:0005457
dorsal hypohyal-urohyal joint
Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired.
TAO:curator
Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired.
Ceri
2010-07-21T02:02:53Z
TAO:0001845
zebrafish_anatomy
ZFA:0005458
dorsal hypohyal-ventral hypohyal joint
Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired.
TAO:curator
Space that contains perilymph.
Ceri
2010-07-21T02:03:28Z
zebrafish_anatomy
ZFA:0005459
perilymphatic space
Space that contains perilymph.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Bilaterally paired perilymphatic chambers posterior to the sinus impar. These connect to the anterior end of the otic duct.
Ceri
2010-07-21T02:06:23Z
zebrafish_anatomy
ZFA:0005460
atrium of sinus impar
Bilaterally paired perilymphatic chambers posterior to the sinus impar. These connect to the anterior end of the otic duct.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-7
Duct that contains perilymph.
Ceri
2010-07-21T02:15:02Z
zebrafish_anatomy
ZFA:0005461
perilymphatic duct
Duct that contains perilymph.
GOC:cvs
ORCiD:0000-0002-2244-7917
Pair of perilymphatic ducts that extend from the dorsal ends of the atria of the sinus impar, pass on either side of the medulla and merge and extend dorsally toward the surface of the head.
Ceri
2010-07-21T02:15:52Z
zebrafish_anatomy
ZFA:0005462
otic duct
Pair of perilymphatic ducts that extend from the dorsal ends of the atria of the sinus impar, pass on either side of the medulla and merge and extend dorsally toward the surface of the head.
ZFIN:ZDB-PUB-010912-7
Ectoderm of the oral region.
Ceri
2010-07-21T03:22:11Z
zebrafish_anatomy
ZFA:0005463
oral ectoderm
Ectoderm of the oral region.
GOC:cvs
ORCiD:0000-0002-2244-7917
Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired.
Ceri
2010-07-21T03:56:09Z
TAO:0001749
zebrafish_anatomy
ZFA:0005464
dentary-anguloarticular joint
Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired.
TAO:curator
Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired.
Ceri
2010-07-21T03:56:35Z
TAO:0001850
zebrafish_anatomy
ZFA:0005465
ceratohyal-branchiostegal ray joint
Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired.
TAO:curator
Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired.
Ceri
2010-07-21T03:56:50Z
TAO:0001844
zebrafish_anatomy
ZFA:0005466
ceratohyal-ventral hypohyal joint
Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired.
TAO:curator
Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired.
Ceri
2010-07-21T03:57:08Z
TAO:0001843
zebrafish_anatomy
ZFA:0005467
ceratohyal-dorsal hypohyal joint
Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired.
TAO:curator
Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired.
Ceri
2010-07-21T03:57:53Z
TAO:0001711
zebrafish_anatomy
ZFA:0005468
frontal-pterotic joint
Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired.
TAO:curator
Joint that articulates the hyomandibula bone and metapterygoid bone.
Ceri
2010-07-21T03:58:13Z
TAO:0001979
zebrafish_anatomy
ZFA:0005469
hyomandibula-metapterygoid joint
Joint that articulates the hyomandibula bone and metapterygoid bone.
TAO:curator
Joint between the right and left coracoid bones of the pectoral girdle.
Ceri
2010-07-21T03:58:45Z
TAO:0002040
zebrafish_anatomy
ZFA:0005470
inter-coracoid joint
Joint between the right and left coracoid bones of the pectoral girdle.
TAO:curator
Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired.
Ceri
2010-07-21T03:59:58Z
TAO:0001939
zebrafish_anatomy
ZFA:0005471
inter-basipterygium joint
Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired.
TAO:curator
Joint between the left and right frontal bone.
Ceri
2010-07-21T04:01:00Z
TAO:0001922
interfrontal joint
interfrontal suture
zebrafish_anatomy
metopic suture
ZFA:0005472
inter-frontal joint
Joint between the left and right frontal bone.
TAO:WD
interfrontal suture
ZFIN:ZDB-PUB-060323-12
metopic suture
ZFIN:ZDB-PUB-060323-12
Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired.
Ceri
2010-07-21T04:01:23Z
TAO:0001841
zebrafish_anatomy
ZFA:0005473
interhyal-epihyal joint
Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired.
TAO:curator
Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired.
Ceri
2010-07-21T04:01:35Z
TAO:0001863
zebrafish_anatomy
ZFA:0005474
inter-hypobranchial 3 joint
Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired.
TAO:curator
Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired.
Ceri
2010-07-21T04:01:59Z
TAO:0001950
zebrafish_anatomy
ZFA:0005475
inter-premaxillary joint
Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired.
TAO:curator
Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired.
Ceri
2010-07-21T04:02:17Z
TAO:0001846
zebrafish_anatomy
ZFA:0005476
inter-ventral hypohyal joint
Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired.
TAO:curator
Joint that articulates the lateral ethmoid and frontal. Lateral ethmoid-frontal joint is paired.
Ceri
2010-07-21T04:02:40Z
TAO:0002032
zebrafish_anatomy
ZFA:0005477
lateral ethmoid-frontal joint
Joint that articulates the lateral ethmoid and frontal. Lateral ethmoid-frontal joint is paired.
TAO:curator
Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired.
Ceri
2010-07-21T04:03:01Z
TAO:0001710
zebrafish_anatomy
ZFA:0005478
opercle-interopercle joint
Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired.
TAO:curator
Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired.
Ceri
2010-07-21T04:03:17Z
TAO:0001941
zebrafish_anatomy
ZFA:0005479
orbitosphenoid-lateral ethmoid joint
Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired.
TAO:curator
Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired.
Ceri
2010-07-21T04:03:30Z
TAO:0001794
zebrafish_anatomy
ZFA:0005480
orbitosphenoid-prootic joint
Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired.
TAO:curator
Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired.
Ceri
2010-07-21T04:41:27Z
TAO:0002034
zebrafish_anatomy
ZFA:0005481
prootic-exoccipital joint
Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired.
TAO:curator
Joint that articulates the prootic and pterosphenoid. Prootic-pterosphenoid joint is paired. The parasphenoid borders the prootic medially in a syndesmosis.
Ceri
2010-07-21T04:41:53Z
TAO:0002033
zebrafish_anatomy
ZFA:0005482
prootic-pterosphenoid joint
Joint that articulates the prootic and pterosphenoid. Prootic-pterosphenoid joint is paired. The parasphenoid borders the prootic medially in a syndesmosis.
TAO:curator
ZFIN:ZDB-PUB-961014-192
Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired.
Ceri
2010-07-21T04:42:11Z
TAO:0001831
zebrafish_anatomy
ZFA:0005483
pterosphenoid-orbitosphenoid joint
Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired.
TAO:curator
Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired.
Ceri
2010-07-21T04:44:59Z
TAO:0001802
zebrafish_anatomy
jaw joint
ZFA:0005484
quadrate-anguloarticular joint
Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired.
TAO:curator
Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired.
Ceri
2010-07-21T04:45:14Z
TAO:0001801
zebrafish_anatomy
ZFA:0005485
quadrate-hyomandibula joint
Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired.
TAO:curator
Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired.
Ceri
2010-07-21T04:45:27Z
TAO:0001803
zebrafish_anatomy
ZFA:0005486
quadrate-metapterygoid joint
Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired.
TAO:curator
Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired.
Ceri
2010-07-21T04:46:00Z
TAO:0001848
zebrafish_anatomy
ZFA:0005487
ventral hypohyal-urohyal joint
Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired.
TAO:curator
Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired.
Ceri
2010-07-21T04:55:35Z
TAO:0001851
dentary symphysis
inter-mandibular joint
zebrafish_anatomy
ZFA:0005488
mandibular symphysis
Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired.
TAO:curator
Is a portion of tissue part of the heart primordium which will give rise to the endocardium.
Ceri
2010-07-21T02:50:10Z
zebrafish_anatomy
ZFA:0005489
endocardial precursor
Is a portion of tissue part of the heart primordium which will give rise to the endocardium.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of tissue that will develop into the myocardium.
Ceri
2010-07-21T02:53:48Z
zebrafish_anatomy
ZFA:0005490
myocardial precursor
Portion of tissue that will develop into the myocardium.
GOC:cvs
ORCiD:0000-0002-2244-7917
Groove that is in the ventral optic cup remnant of the optic fissure.
Ceri
2010-07-21T03:00:49Z
zebrafish_anatomy
optic fissure
ZFA:0005491
optic furrow
Groove that is in the ventral optic cup remnant of the optic fissure.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090819-12
Fossa where the hyomandibula articulates with the sphenotic and prootic to form the hyomandibular-otic region joint.
Ceri
2010-07-22T11:19:01Z
TAO:0002090
zebrafish_anatomy
ZFA:0005492
sphenotic-prootic fossa
Fossa where the hyomandibula articulates with the sphenotic and prootic to form the hyomandibular-otic region joint.
ZFIN:ZDB-PUB-961014-192
true
Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.
Ceri
2010-07-22T11:20:29Z
TAO:0001890
VSAO:0000128
zebrafish_anatomy
ZFA:0005494
skeletal element
Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.
VSAO:curator
Surface structure that is a portion of skin that projects or hangs from the body.
Ceri
2010-07-22T11:21:23Z
TAO:0001951
zebrafish_anatomy
ZFA:0005495
skin flap
Surface structure that is a portion of skin that projects or hangs from the body.
TAO:curator
Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout.
Ceri
2010-07-22T11:22:07Z
TAO:0001712
zebrafish_anatomy
ZFA:0005496
snout
Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout.
TAO:curator
Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired.
Ceri
2010-07-22T12:32:09Z
TAO:0001842
zebrafish_anatomy
ZFA:0005497
epihyal-ceratohyal joint
Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired.
TAO:curator
Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired.
Ceri
2010-07-22T12:32:23Z
TAO:0001849
zebrafish_anatomy
ZFA:0005498
epihyal-branchiostegal ray joint
Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired.
TAO:curator
Fine ridges on surface of scale, often parallel to the circumference of scale.
Ceri
2010-07-22T12:33:11Z
TAO:0002051
circuli
zebrafish_anatomy
ZFA:0005499
circulus
Fine ridges on surface of scale, often parallel to the circumference of scale.
TAO:curator
http://www.briancoad.com/main.asp?page=fishdictionary.htm
circuli
Is a bony partially gas filled sphere located ventral and anterior to the inner ear. The prootic bulla is paired.
Ceri
2010-07-22T02:22:46Z
TAO:0002111
zebrafish_anatomy
ZFA:0005500
prootic bulla
Is a bony partially gas filled sphere located ventral and anterior to the inner ear. The prootic bulla is paired.
GOC:ymb
ORCiD:0000-0002-9900-7880
Interopercular-mandibular ligament is a ligament that connects the interopercle to the retroarticular element of the lower jaw.
Ceri
2010-07-22T12:38:04Z
TAO:0001687
interoperculomandibular ligament
zebrafish_anatomy
ZFA:0005501
The interopercle ossifies in the interoperculomandibular ligament, which attaches to the retroarticular. The interopercle approximates and is ligamentously attached to the retroarticular anteroventrally. ZDB-PUB-961014-192. Need develops_in relationship for interopercle.
interopercular-mandibular ligament
Interopercular-mandibular ligament is a ligament that connects the interopercle to the retroarticular element of the lower jaw.
TAO:curator
ZFIN:ZDB-PUB-961014-192
interoperculomandibular ligament
ZFIN:ZDB-PUB-961014-192
Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine.
Ceri
2010-07-22T12:38:20Z
TAO:0001944
zebrafish_anatomy
ZFA:0005502
lateral ethmoid-autopalatine ligament
Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine.
TAO:curator
Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid.
Ceri
2010-07-22T12:38:32Z
TAO:0001685
zebrafish_anatomy
ZFA:0005503
lateral ethmoid-ectopterygoid ligament
Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid.
TAO:curator
Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5.
Ceri
2010-07-22T01:33:36Z
TAO:0001940
zebrafish_anatomy
ZFA:0005504
vertebra 4-vertebra 5 joint
Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5.
TAO:curator
Joint between the centra, and sometimes the neural arches or parapophyses.
Ceri
2010-07-22T01:33:50Z
TAO:0002054
zebrafish_anatomy
ZFA:0005505
vertebra 5-vertebra 6 joint
Joint between the centra, and sometimes the neural arches or parapophyses.
TAO:curator
Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7.
Ceri
2010-07-22T01:34:02Z
TAO:0002055
zebrafish_anatomy
ZFA:0005506
vertebra 6 - vertebra 7 joint
Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7.
TAO:curator
Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium.
Ceri
2010-07-23T11:47:54Z
TAO:0002035
zebrafish_anatomy
ZFA:0005507
nasal capsule
Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium.
GOC:cvs
ORCiD:0000-0002-2244-7917
Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel.
Ceri
2010-07-23T12:08:04Z
TAO:0001969
zebrafish_anatomy
ZFA:0005508
inner mental barbel
Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel.
TAO:curator
Anatomical cluster that is the upper roof of the mouth that is roofed by bones such as the parasphenoid, prevomer, metapterygoid, orbitosphenoid.
Ceri
2010-07-23T12:10:28Z
TAO:0002093
zebrafish_anatomy
ZFA:0005509
palate
Anatomical cluster that is the upper roof of the mouth that is roofed by bones such as the parasphenoid, prevomer, metapterygoid, orbitosphenoid.
TAO:curator
Shallow area that exists on the prootic.
Ceri
2010-07-23T12:30:37Z
TAO:0002052
zebrafish_anatomy
ZFA:0005510
prootic depression
Shallow area that exists on the prootic.
TAO:curator
Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal.
Ceri
2010-07-23T12:32:05Z
TAO:0001932
zebrafish_anatomy
ZFA:0005511
sensory canal tubular ossicle
Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal.
TAO:curator
Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin.
Ceri
2010-07-23T12:45:32Z
TAO:0001713
caudal principal lepidotrichium 1
caudal principal ray 1
zebrafish_anatomy
ZFA:0005512
caudal fin principal ray 1
Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 2.
Ceri
2010-07-23T01:01:02Z
TAO:0001715
caudal principal lepidotrichium 3
caudal principal ray 3
zebrafish_anatomy
ZFA:0005513
caudal fin principal ray 3
Caudal principal ray that is ventrally adjacent to caudal principal ray 2.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 1.
Ceri
2010-07-23T12:57:40Z
TAO:0001714
caudal principal lepidotrichium 2
caudal principal ray 2
zebrafish_anatomy
ZFA:0005514
caudal fin principal ray 2
Caudal principal ray that is ventrally adjacent to caudal principal ray 1.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 3.
Ceri
2010-07-23T01:01:37Z
TAO:0001716
caudal principal lepidotrichium 4
caudal principal ray 4
zebrafish_anatomy
ZFA:0005515
caudal fin principal ray 4
Caudal principal ray that is ventrally adjacent to caudal principal ray 3.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 4.
Ceri
2010-07-23T01:02:04Z
TAO:0001717
caudal principal lepidotrichium 5
caudal principal ray 5
zebrafish_anatomy
ZFA:0005516
caudal fin principal ray 5
Caudal principal ray that is ventrally adjacent to caudal principal ray 4.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 5.
Ceri
2010-07-23T01:02:36Z
TAO:0001718
caudal principal lepidotrichium 6
caudal principal ray 6
zebrafish_anatomy
ZFA:0005517
caudal fin principal ray 6
Caudal principal ray that is ventrally adjacent to caudal principal ray 5.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 6.
Ceri
2010-07-23T01:02:36Z
TAO:0001719
caudal principal lepidotrichium 7
caudal principal ray 7
zebrafish_anatomy
ZFA:0005518
caudal fin principal ray 7
Caudal principal ray that is ventrally adjacent to caudal principal ray 6.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 7.
Ceri
2010-07-23T01:02:36Z
TAO:0001720
caudal principal lepidotrichium 8
caudal principal ray 8
zebrafish_anatomy
ZFA:0005519
caudal fin principal ray 8
Caudal principal ray that is ventrally adjacent to caudal principal ray 7.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 8.
Ceri
2010-07-23T01:02:36Z
TAO:0001721
caudal principal lepidotrichium 9
caudal principal ray 9
zebrafish_anatomy
ZFA:0005520
caudal fin principal ray 9
Caudal principal ray that is ventrally adjacent to caudal principal ray 8.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 9.
Ceri
2010-07-23T01:02:36Z
TAO:0001722
caudal principal lepidotrichium 10
caudal principal ray 10
zebrafish_anatomy
ZFA:0005521
caudal fin principal ray 10
Caudal principal ray that is ventrally adjacent to caudal principal ray 9.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 10.
Ceri
2010-07-23T01:02:36Z
TAO:0001723
caudal principal lepidotrichium 11
caudal principal ray 11
zebrafish_anatomy
ZFA:0005522
caudal fin principal ray 11
Caudal principal ray that is ventrally adjacent to caudal principal ray 10.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 11.
Ceri
2010-07-23T01:02:36Z
TAO:0001724
caudal principal lepidotrichium 12
caudal principal ray 12
zebrafish_anatomy
ZFA:0005523
caudal fin principal ray 12
Caudal principal ray that is ventrally adjacent to caudal principal ray 11.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 13.
Ceri
2010-07-23T01:02:36Z
TAO:0001726
caudal principal lepidotrichium 14
caudal principal ray 14
zebrafish_anatomy
ZFA:0005524
caudal fin principal ray 14
Caudal principal ray that is ventrally adjacent to caudal principal ray 13.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 14.
Ceri
2010-07-23T01:02:36Z
TAO:0001727
caudal principal lepidotrichium 15
caudal principal ray 15
zebrafish_anatomy
ZFA:0005525
caudal fin principal ray 15
Caudal principal ray that is ventrally adjacent to caudal principal ray 14.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 15.
Ceri
2010-07-23T01:02:36Z
TAO:0001728
caudal principal lepidotrichium 16
caudal principal ray 16
zebrafish_anatomy
ZFA:0005526
caudal fin principal ray 16
Caudal principal ray that is ventrally adjacent to caudal principal ray 15.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 16.
Ceri
2010-07-23T01:02:36Z
TAO:0001729
caudal principal lepidotrichium 17
caudal principal ray 17
zebrafish_anatomy
ZFA:0005527
caudal fin principal ray 17
Caudal principal ray that is ventrally adjacent to caudal principal ray 16.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 17.
Ceri
2010-07-23T01:02:36Z
TAO:0001730
caudal principal lepidotrichium 18
caudal principal ray 18
zebrafish_anatomy
ZFA:0005528
caudal fin principal ray 18
Caudal principal ray that is ventrally adjacent to caudal principal ray 17.
TAO:curator
Caudal principal ray that is ventrally adjacent to caudal principal ray 18.
Ceri
2010-07-23T01:02:36Z
TAO:0001731
caudal principal lepidotrichium 19
caudal principal ray 19
zebrafish_anatomy
ZFA:0005529
caudal fin principal ray 19
Caudal principal ray that is ventrally adjacent to caudal principal ray 18.
TAO:curator
Scale that is associated with the lateral line sensory canal.
Ceri
2010-07-23T01:49:27Z
TAO:0001824
zebrafish_anatomy
ZFA:0005530
lateral line scale
Scale that is associated with the lateral line sensory canal.
TAO:curator
The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit.
Ceri
2010-07-23T01:52:58Z
TAO:0001686
zebrafish_anatomy
ZFA:0005531
bony shelf above orbit
The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit.
TAO:curator
Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series.
Ceri
2010-07-23T01:53:33Z
TAO:0002053
zebrafish_anatomy
ZFA:0005532
bony plate
Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series.
TAO:curator
Caudal fin lepidotrichium that is distally branched.
Ceri
2010-07-23T01:55:31Z
TAO:0002062
zebrafish_anatomy
ZFA:0005533
branched caudal fin ray
Caudal fin lepidotrichium that is distally branched.
TAO:curator
Dorsal fin ray that is distally branched.
Ceri
2010-07-23T01:55:54Z
TAO:0001785
zebrafish_anatomy
ZFA:0005534
branched dorsal fin ray
Dorsal fin ray that is distally branched.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anal fin lepidotrichium that is distally branched.
Ceri
2010-07-23T01:56:47Z
TAO:0001992
anal fin branched ray
zebrafish_anatomy
ZFA:0005535
branched anal fin ray
Anal fin lepidotrichium that is distally branched.
TAO:curator
Anatomical space between bones of the neurocranium. Frequently closes during development.
Ceri
2010-07-29T06:27:16Z
TAO:0001738
zebrafish_anatomy
ZFA:0005536
fontanel
Anatomical space between bones of the neurocranium. Frequently closes during development.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired.
Ceri
2010-07-29T06:28:46Z
TAO:0002011
zebrafish_anatomy
ZFA:0005537
lateral fontanel of frontal
Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired.
TAO:curator
Rib that articulates with the parapophysis of the first centrum.
Ceri
2010-07-29T06:29:54Z
TAO:0001879
zebrafish_anatomy
ZFA:0005538
rib of vertebra 1
Rib that articulates with the parapophysis of the first centrum.
TAO:curator
Rib that articulates with the parapophysis of the second centrum.
Ceri
2010-07-29T06:30:06Z
TAO:0001878
zebrafish_anatomy
ZFA:0005539
rib of vertebra 2
Rib that articulates with the parapophysis of the second centrum.
TAO:curator
Rib that articulates with the parapophysis of the third centrum.
Ceri
2010-07-29T06:30:18Z
TAO:0001880
zebrafish_anatomy
ZFA:0005540
rib of vertebra 3
Rib that articulates with the parapophysis of the third centrum.
TAO:curator
Rib that articulates with the parapophysis of the fourth centrum.
Ceri
2010-07-29T06:30:34Z
TAO:0001881
zebrafish_anatomy
ZFA:0005541
rib of vertebra 4
Rib that articulates with the parapophysis of the fourth centrum.
TAO:curator
Rib that articulates with the parapophysis of the fifth centrum.
Ceri
2010-07-29T06:30:51Z
TAO:0001751
zebrafish_anatomy
ZFA:0005542
rib of vertebra 5
Rib that articulates with the parapophysis of the fifth centrum.
TAO:curator
Rib that articulates with the parapophysis of the sixth centrum.
Ceri
2010-07-29T06:31:02Z
TAO:0001750
zebrafish_anatomy
ZFA:0005543
rib of vertebra 6
Rib that articulates with the parapophysis of the sixth centrum.
TAO:curator
Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired.
Ceri
2010-07-30T10:38:51Z
TAO:0001947
hyomandibula-sphenotic-prootic joint
zebrafish_anatomy
ZFA:0005544
hyomandibular-otic region joint
Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired.
TAO:curator
Actinotrichium that is part of the pectoral fin.
Ceri
2010-07-30T10:50:19Z
TAO:0000544
zebrafish_anatomy
ZFA:0005545
pectoral fin actinotrichium
Actinotrichium that is part of the pectoral fin.
TAO:curator
Actinotrichium that is part of the pelvic fin.
Ceri
2010-07-30T10:50:46Z
TAO:0000596
zebrafish_anatomy
ZFA:0005546
pelvic fin actinotrichium
Actinotrichium that is part of the pelvic fin.
TAO:curator
Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched.
Ceri
2010-07-30T10:55:24Z
TAO:0001761
zebrafish_anatomy
ZFA:0005547
pectoral fin lepidotrichium 1
Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched.
TAO:curator
Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray, usually branched and segmented.
Ceri
2010-07-30T10:58:18Z
TAO:0001762
zebrafish_anatomy
ZFA:0005548
pectoral fin lepidotrichium 2
Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray, usually branched and segmented.
TAO:curator
Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray, usually branched and segmented.
Ceri
2010-07-30T10:58:24Z
TAO:0001763
zebrafish_anatomy
ZFA:0005549
pectoral fin lepidotrichium 3
Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray, usually branched and segmented.
TAO:curator
Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray, usually branched and segmented.
Ceri
2010-07-30T10:59:08Z
TAO:0001766
zebrafish_anatomy
ZFA:0005550
pectoral fin lepidotrichium 6
Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray, usually branched and segmented.
TAO:curator
Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray, usually branched and segmented.
Ceri
2010-07-30T10:59:13Z
TAO:0001767
zebrafish_anatomy
ZFA:0005551
pectoral fin lepidotrichium 7
Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray, usually branched and segmented.
TAO:curator
Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray , usually branched and segmented.
Ceri
2010-07-30T10:59:20Z
TAO:0001765
zebrafish_anatomy
ZFA:0005552
pectoral fin lepidotrichium 5
Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray , usually branched and segmented.
TAO:curator
Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray, usually branched and segmented.
Ceri
2010-07-30T10:59:26Z
TAO:0001764
zebrafish_anatomy
ZFA:0005553
pectoral fin lepidotrichium 4
Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray, usually branched and segmented.
TAO:curator
First lepidotrichium of pelvic fin.
Ceri
2010-07-30T11:13:56Z
TAO:0001776
zebrafish_anatomy
ZFA:0005554
pelvic fin lepidotrichium 1
First lepidotrichium of pelvic fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Second lepidotrichium of pelvic fin.
Ceri
2010-07-30T11:15:37Z
TAO:0001777
zebrafish_anatomy
ZFA:0005555
pelvic fin lepidotrichium 2
Second lepidotrichium of pelvic fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Fourth lepidotrichium of pelvic fin.
Ceri
2010-07-30T11:15:48Z
TAO:0001779
zebrafish_anatomy
ZFA:0005556
pelvic fin lepidotrichium 4
Fourth lepidotrichium of pelvic fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Third lepidotrichium of pelvic fin.
Ceri
2010-07-30T11:15:48Z
TAO:0001778
zebrafish_anatomy
ZFA:0005557
pelvic fin lepidotrichium 3
Third lepidotrichium of pelvic fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anatomical space that is the concavity containing the eye.
Ceri
2010-07-30T11:17:20Z
TAO:0001967
zebrafish_anatomy
ZFA:0005558
orbit
Anatomical space that is the concavity containing the eye.
TAO:curator
Portion of vessel wall that extends to form a new vessel.
Ceri
2010-09-23T05:54:14Z
zebrafish_anatomy
angiogenic sprout
ZFA:0005559
vascular sprouts
Portion of vessel wall that extends to form a new vessel.
GOC:cvs
ORCiD:0000-0002-2244-7917
Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is paired.
Ceri
2010-09-24T11:52:49Z
TAO:0001832
zebrafish_anatomy
ZFA:0005560
parasphenoid-basioccipital joint
Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is paired.
TAO:curator
Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye.
Ceri
2010-11-10T01:16:52Z
TAO:0002290
vitreous body
vitreous humor
zebrafish_anatomy
ZFA:0005561
vitreous
Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
PMID:18344966
Acellular anatomical structure that is the innermost layer of the optic choroid.
Ceri
2010-11-10T02:16:43Z
vitreous lamina
zebrafish_anatomy
ZFA:0005562
Bruch's membrane
Acellular anatomical structure that is the innermost layer of the optic choroid.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070614-11
Multi-tissue structure that composes the opaque fibrous outer layer of the eye.
Ceri
2010-11-11T10:53:23Z
TAO:0002289
zebrafish_anatomy
ZFA:0005563
sclera
Multi-tissue structure that composes the opaque fibrous outer layer of the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells.
Ceri
2010-11-11T11:10:25Z
TAO:0002288
zebrafish_anatomy
ZFA:0005564
aqueous humor
Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place.
Ceri
2010-11-11T01:59:44Z
CL:0002450
zebrafish_anatomy
ZFA:0005565
tether cell
A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place.
ZFIN:ZDB-PUB-971216-3
Anatomical cluster comprising the rostral portion of the eye; the cornea, lens, iris, ciliary zone, anterior chamber, and annular ligament.
Ceri
2010-11-11T05:44:57Z
zebrafish_anatomy
ZFA:0005566
anterior segment eye
Anatomical cluster comprising the rostral portion of the eye; the cornea, lens, iris, ciliary zone, anterior chamber, and annular ligament.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
Anatomical cluster comprising the caudal portion of the eye: the retina, posterior chamber, optic choroid, and vitreous.
Ceri
2010-11-12T11:52:42Z
zebrafish_anatomy
ZFA:0005567
posterior segment eye
Anatomical cluster comprising the caudal portion of the eye: the retina, posterior chamber, optic choroid, and vitreous.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
Blood vessels within the stroma of the iris. The vessels cluster and are more dense at the base of the stroma where the iris is thicker.
Ceri
2010-12-01T02:00:15Z
zebrafish_anatomy
ZFA:0005568
iris blood vessels
Blood vessels within the stroma of the iris. The vessels cluster and are more dense at the base of the stroma where the iris is thicker.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
Portion of the iris which contains bundles of fibers, most of which are oriented radially around the pupil. The stroma is innervated by the iris blood vessels and develops from the periocular mesenchyme.
Ceri
2010-12-01T02:28:06Z
zebrafish_anatomy
ZFA:0005569
iris stroma
Portion of the iris which contains bundles of fibers, most of which are oriented radially around the pupil. The stroma is innervated by the iris blood vessels and develops from the periocular mesenchyme.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
The line where the cornea and the sclera meet.
Ceri
2010-11-12T03:45:32Z
zebrafish_anatomy
ZFA:0005570
corneo-scleral junction
The line where the cornea and the sclera meet.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090309-8
Duct present in the angle where the cornea meets the ciliary zone that absorbs the aqueous humor.
Ceri
2010-11-12T03:51:50Z
zebrafish_anatomy
ZFA:0005571
ventral canal eye
Duct present in the angle where the cornea meets the ciliary zone that absorbs the aqueous humor.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
Head mesenchyme surrounding the immature eye that gives rise to specialized structures of the anterior segment of the eye.
Ceri
2010-12-02T12:29:18Z
zebrafish_anatomy
ZFA:0005572
periocular mesenchyme
Head mesenchyme surrounding the immature eye that gives rise to specialized structures of the anterior segment of the eye.
ZFIN:ZDB-PUB-050701-15
Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary.
Ceri
2010-12-02T06:08:45Z
zonules
zebrafish_anatomy
ZFA:0005573
zonule
Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050701-15
zonules
The lens capsule is a modified basement membrane that completely surrounds the ocular lens.
Ceri
2010-12-03T11:36:36Z
zebrafish_anatomy
ZFA:0005574
lens capsule
The lens capsule is a modified basement membrane that completely surrounds the ocular lens.
GOC:cvs
ORCiD:0000-0002-2244-7917
PMID:18773892
Portion of tissue that are compact accumulations of neurons having roughly similar connections and functions.
Ceri
2011-01-28T05:31:14Z
brain nuclei
zebrafish_anatomy
ZFA:0005575
brain nucleus
Portion of tissue that are compact accumulations of neurons having roughly similar connections and functions.
GOC:mh
ISBN:0878937420
ORCiD:0000-0001-9114-8737
brain nuclei
Brain nuclei located in the ventral thalamus.
Ceri
2011-02-24T04:49:33Z
zebrafish_anatomy
ZFA:0005576
ventral thalamus nucleus
Brain nuclei located in the ventral thalamus.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ceri
2011-02-24T04:54:52Z
zebrafish_anatomy
ZFA:0005577
tegmental nucleus
The multi-tissue structure that is the beginning of the spinal nerve leaving the spinal cord.
Ceri
2011-03-04T05:17:42Z
zebrafish_anatomy
ZFA:0005578
spinal nerve root
The multi-tissue structure that is the beginning of the spinal nerve leaving the spinal cord.
http://en.wikipedia.org/wiki/Nerve_root
Integument ionocyte rich in Na-Cl co-transporter (NCC) activity.
Ceri
2011-03-07T02:03:05Z
NCC cell
zebrafish_anatomy
ZFA:0005579
NCC ionocyte
Integument ionocyte rich in Na-Cl co-transporter (NCC) activity.
ZFIN:ZDB-PUB-090318-15
Rostral portion of pars anterior of the adenohypophysis where corticotropes and lactotropes localize.
Ceri
2011-04-13T11:44:33Z
rostral pars distalis
zebrafish_anatomy
ZFA:0005580
rostral pars anterior
Rostral portion of pars anterior of the adenohypophysis where corticotropes and lactotropes localize.
ZFIN:ZDB-PUB-080616-4
Caudal portion of pars anterior of the adenohypophysis where somatotropes, thyrotropes and gonadotropes are localized. The proximal pars anterior has functional homology to the mammalian pars tuberalis, secreting the same hormones.
Ceri
2011-04-13T02:37:52Z
proximal pars distalis
zebrafish_anatomy
ZFA:0005581
proximal pars anterior
Caudal portion of pars anterior of the adenohypophysis where somatotropes, thyrotropes and gonadotropes are localized. The proximal pars anterior has functional homology to the mammalian pars tuberalis, secreting the same hormones.
ZFIN:ZDB-PUB-080616-4
Cluster of cells along the edge of the neural plate that have the potential to become neuroblast.
Ceri
2011-04-14T02:02:16Z
zebrafish_anatomy
ZFA:0005582
dorsal proneural cluster
Cluster of cells along the edge of the neural plate that have the potential to become neuroblast.
ZFIN:ZDB-PUB-990921-1
Cluster of cells along the center of the neural plate that have the potential to become neuroblast.
Ceri
2011-04-14T02:02:55Z
zebrafish_anatomy
ZFA:0005583
ventral proneural cluster
Cluster of cells along the center of the neural plate that have the potential to become neuroblast.
ZFIN:ZDB-PUB-990921-1
Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons.
Ceri
2011-04-26T04:10:09Z
zebrafish_anatomy
ZFA:0005584
developing mesonephric nephron
Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons.
GOC:cvs
ORCiD:0000-0002-2244-7917
Renal duct that will develop into the mesonephric proximal tubule.
Ceri
2011-04-27T10:55:07Z
zebrafish_anatomy
ZFA:0005585
developing mesonephric proximal tubule
Renal duct that will develop into the mesonephric proximal tubule.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Hollow cluster of epithelial cells derived from the nephron progenitor.
Ceri
2011-04-26T04:25:56Z
stage I nephron
zebrafish_anatomy
ZFA:0005586
renal vesicle
Hollow cluster of epithelial cells derived from the nephron progenitor.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110131-33
Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells.
Ceri
2011-04-26T04:26:56Z
zebrafish_anatomy
ZFA:0005587
nephron progenitor
Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110131-33
Developing nephron with a comma shaped appearance.
Ceri
2011-04-26T04:41:04Z
zebrafish_anatomy
ZFA:0005588
comma-shaped body
Developing nephron with a comma shaped appearance.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110131-33
Developing nephron with a tubular morphology that has a renal corpuscle anlage at the distal end.
Ceri
2011-04-26T05:07:54Z
zebrafish_anatomy
stage II nephron
ZFA:0005589
s-shaped body
Developing nephron with a tubular morphology that has a renal corpuscle anlage at the distal end.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110131-33
Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft.
Ceri
2011-04-26T05:45:15Z
zebrafish_anatomy
ZFA:0005590
capillary loop nephron
Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft.
GOC:cvs
ORCiD:0000-0002-2244-7917
Renal duct that will develop into the mesonephric distal tubule.
Ceri
2011-04-27T10:55:41Z
zebrafish_anatomy
ZFA:0005591
developing mesonephric distal tubule
Renal duct that will develop into the mesonephric distal tubule.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
A branched nephron of the mature kidney.
Ceri
2011-04-27T12:15:19Z
stage IV nephron
zebrafish_anatomy
ZFA:0005592
mesonephric nephron
A branched nephron of the mature kidney.
ZFIN:ZDB-PUB-110131-33
An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis.
Ceri
2011-05-02T01:03:43Z
zebrafish_anatomy
ZFA:0005593
neuraxis flexure
An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis.
GOC:cvs
ORCiD:0000-0002-2244-7917
Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures.
ZFIN
2011-03-22T10:34:12Z
CARO:0000010
zebrafish_anatomy
ZFA:0005594
anatomical surface
Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures.
CARO:MAH
ORCiD:0000-0001-9114-8737
Caudal principal ray that is ventrally adjacent to caudal principal ray 12.
Ceri
2011-11-04T02:44:32Z
TAO:0001725
caudal principal lepidotrichium 13
caudal principal ray 13
zebrafish_anatomy
ZFA:0005595
caudal fin principal ray 13
Caudal principal ray that is ventrally adjacent to caudal principal ray 12.
TAO:curator
Fin that is one of a pair located ventrally on the organism.
Ceri
2011-11-11T11:22:21Z
TAO:0002278
zebrafish_anatomy
ZFA:0005596
paired fin
Fin that is one of a pair located ventrally on the organism.
TAO:curator
Fin that is an unpaired fin located in the sagittal plane of the organism.
Ceri
2011-11-11T11:33:02Z
TAO:0002276
zebrafish_anatomy
ZFA:0005597
median fin
Fin that is an unpaired fin located in the sagittal plane of the organism.
TAO:curator
Ghrelin secreting cells found in the found in the exocrine pancreas.
Ceri
2011-11-17T01:02:01Z
ZFA:0009382
CL:0005019
pancreatic E cell
zebrafish_anatomy
ZFA:0005598
In mammals the endocrine pancreas is called the Islets of Langerhans.
pancreatic epsilon cell
Ghrelin secreting cells found in the found in the exocrine pancreas.
PMID:14970313
A cell that secretes ghrelin, the peptide hormone that stimulates hunger.
Ceri
2011-11-17T01:03:24Z
ZFA:0009381
CL:0005018
zebrafish_anatomy
ZFA:0005599
ghrelin secreting cell
A cell that secretes ghrelin, the peptide hormone that stimulates hunger.
CL:curator
Region at venious pole of heart tube that initiates heart beat.
Ceri
2011-11-22T04:14:44Z
zebrafish_anatomy
ZFA:0005600
sinoatrial region
Region at venious pole of heart tube that initiates heart beat.
ZFIN:ZDB-PUB-101115-23
Ring of cardiac conduction tissue around the sinoatrial region of the heart tube that performs pacemaker function.
Ceri
2011-11-22T04:16:19Z
zebrafish_anatomy
ZFA:0005601
sinoatrial ring
Ring of cardiac conduction tissue around the sinoatrial region of the heart tube that performs pacemaker function.
ZFIN:ZDB-PUB-101115-23
Supraneural located posterior to supraneural 9. This supraneural does not appear in most specimens.
jonknight
2011-12-05T12:56:49Z
zebrafish_anatomy
ZFA:0005602
supraneural 10
Supraneural located posterior to supraneural 9. This supraneural does not appear in most specimens.
ZFIN:ZDB-PUB-031103-13
Portion of vessel wall that extends to form a new lymph vessel.
Ceri
2011-12-27T12:39:43Z
zebrafish_anatomy
ZFA:0005603
lymphangiogenic sprout
Portion of vessel wall that extends to form a new lymph vessel.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-100719-62
Portion of vessel wall that extends to form a new blood vessel.
Ceri
2011-12-27T12:41:09Z
zebrafish_anatomy
ZFA:0005604
angiogenic sprout
Portion of vessel wall that extends to form a new blood vessel.
GOC:cvs
ORCiD:0000-0002-2244-7917
The primordial vasculature that will develop into lymph vessels. The lymphangioblast cord is composed of lymphangioblast or lymph endothelial cells in a solid linear mass called a cord. The cord then undergoes morphogenesis to form the lumen of the vessel.
Ceri
2011-12-27T12:45:30Z
parachordal lymphangioblast string
zebrafish_anatomy
ZFA:0005605
lymphangioblast cord
The primordial vasculature that will develop into lymph vessels. The lymphangioblast cord is composed of lymphangioblast or lymph endothelial cells in a solid linear mass called a cord. The cord then undergoes morphogenesis to form the lumen of the vessel.
ZFIN:ZDB-PUB-100719-62
parachordal lymphangioblast string
ZFIN:ZDB-PUB-110613-5
Anatomical cluster of skeletal elements that forms the roof over the brain.
Ceri
2012-01-30T12:33:01Z
calvaria
calvarium
zebrafish_anatomy
calva
skullcap
ZFA:0005606
cranial vault
Anatomical cluster of skeletal elements that forms the roof over the brain.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060323-12
calvaria
Fibrous joint connecting the parietal bones.
Ceri
2012-01-30T02:35:47Z
TAO:0005245
zebrafish_anatomy
sagittal suture
ZFA:0005607
inter-parietal joint
Fibrous joint connecting the parietal bones.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060323-12
Fibrous joint connecting the frontal bone to the parietal bone. This joint remains patent in zebrafish throughout their lifetime.
Ceri
2012-01-30T02:37:39Z
TAO:0005255
zebrafish_anatomy
coronal suture
ZFA:0005608
frontal-parietal joint
Fibrous joint connecting the frontal bone to the parietal bone. This joint remains patent in zebrafish throughout their lifetime.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060323-12
ZFIN:ZDB-PUB-111111-5
Fibrous joint connecting the supraoccipital to the parietal bone.
Ceri
2012-01-30T02:48:16Z
TAO:0005264
zebrafish_anatomy
lamdoid suture
ZFA:0005609
supraoccipital-parietal joint
Fibrous joint connecting the supraoccipital to the parietal bone.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060323-12
lamdoid suture
ZFIN:ZDB-PUB-060323-12
Joint in which the articulating bones are connected by bone.
Ceri
2012-01-30T03:09:13Z
zebrafish_anatomy
ZFA:0005610
synostosis
Joint in which the articulating bones are connected by bone.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Synostosis where the entopterygoid meets the quadrate.
Ceri
2012-01-30T03:28:11Z
ectopterygoid-quadrate synostosis
zebrafish_anatomy
ZFA:0005611
ectopterygoid-quadrate joint
Synostosis where the entopterygoid meets the quadrate.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Synostosis where the ectopterygoid meets the entopterygoid.
Ceri
2012-01-30T03:31:09Z
ectopterygoid-entopterygoid synostosis
zebrafish_anatomy
ZFA:0005612
ectopterygoid-entopterygoid joint
Synostosis where the ectopterygoid meets the entopterygoid.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Synchondrosis where the basioccipital meets the prootic anteriorly.
Ceri
2012-01-31T03:48:07Z
zebrafish_anatomy
ZFA:0005613
basioccipital-prootic joint
Synchondrosis where the basioccipital meets the prootic anteriorly.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Synostosis where the entopterygoid meets the metapterygoid. The metapterygoid has an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge.
Ceri
2012-01-30T03:45:11Z
entopterygoid-metapterygoid synostosis
zebrafish_anatomy
ZFA:0005614
entopterygoid-metapterygoid joint
Synostosis where the entopterygoid meets the metapterygoid. The metapterygoid has an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Opening formed between the ventral border of the metapterygoid and the dorsal border of the symplectic.
Ceri
2012-01-30T03:53:50Z
zebrafish_anatomy
ZFA:0005615
metapterygoid-symplectic fenestra
Opening formed between the ventral border of the metapterygoid and the dorsal border of the symplectic.
ZFIN:ZDB-PUB-961014-192
Synchondrosis where the quadrate meets the entopterygoid dorsally.
Ceri
2012-01-30T03:57:23Z
zebrafish_anatomy
ZFA:0005616
quadrate-entopterygoid joint
Synchondrosis where the quadrate meets the entopterygoid dorsally.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Synostosis where anteromedial extensions of the lateral ethmoid project to meet the supraethmoid dorsally.
Ceri
2012-02-09T11:27:00Z
zebrafish_anatomy
ZFA:0005617
lateral ethmoid-supraethmoid
Synostosis where anteromedial extensions of the lateral ethmoid project to meet the supraethmoid dorsally.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Cartilaginous joint that articulates the anguloarticular posteroventrally with the retroarticular.
Ceri
2012-02-09T11:51:45Z
zebrafish_anatomy
ZFA:0005618
anguloarticular-retroarticular joint
Cartilaginous joint that articulates the anguloarticular posteroventrally with the retroarticular.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Connective tissue that functions in mechanical and structural support.
Ceri
2012-02-09T03:59:26Z
VSAO:0000015
zebrafish_anatomy
ZFA:0005619
skeletal tissue
Connective tissue that functions in mechanical and structural support.
VSAO:curator
A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification.
Ceri
2012-02-09T02:36:59Z
VSAO:0000139
zebrafish_anatomy
ZFA:0005620
endochondral element
A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification.
VSAO:curator
Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts.
Ceri
2012-02-09T04:00:34Z
VSAO:0000047
zebrafish_anatomy
ZFA:0005621
bone tissue
Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts.
VSAO:curator
Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts.
Ceri
2012-02-09T04:01:46Z
VSAO:0000040
zebrafish_anatomy
ZFA:0005622
cartilage tissue
Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts.
VSAO:curator
Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla.
Ceri
2012-02-09T04:05:11Z
VSAO:0000063
zebrafish_anatomy
ZFA:0005623
odontoid tissue
Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla.
VSAO:curator
Skeletal element that forms as a replacement or substitution of another element or tissue.
Ceri
2012-03-14T12:37:44Z
zebrafish_anatomy
ZFA:0005624
replacement element
Skeletal element that forms as a replacement or substitution of another element or tissue.
TAO:curator
Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra.
Ceri
2012-03-15T03:52:38Z
TAO:0005269
hypophyseal fenestrae
zebrafish_anatomy
ZFA:0005625
hypophyseal fenestra
Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra.
ZFIN:ZDB-PUB-961014-192
hypophyseal fenestrae
Synovial joint that articulates the hyomandibula and the opercle.
Ceri
2012-03-15T04:19:50Z
TAO:0005265
zebrafish_anatomy
ZFA:0005626
hyomandibula-opercle joint
Synovial joint that articulates the hyomandibula and the opercle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Synovial joint that articulates the hyomandibula with the pterotic.
Ceri
2012-03-15T04:14:40Z
zebrafish_anatomy
ZFA:0005627
hyomandibula-pterotic joint
Synovial joint that articulates the hyomandibula with the pterotic.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin.
Ceri
2012-03-15T04:23:27Z
TAO:0001753
temporal fossa
zebrafish_anatomy
ZFA:0005628
posttemporal fossa
Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin.
ZFIN:ZDB-PUB-961014-192
Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII). The foramen develop in the hyosymplectic. The hyomandibular foramen are paired.
Ceri
2012-03-15T04:32:30Z
TAO:0005275
facial foramen
facial nerve foramen
hyosymplectic foramen
zebrafish_anatomy
ZFA:0005629
hyomandibular foramen
Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII). The foramen develop in the hyosymplectic. The hyomandibular foramen are paired.
ZFIN:ZDB-PUB-961014-192
facial nerve foramen
ZFIN:ZDB-PUB-961014-192
hyosymplectic foramen
ZFIN:ZDB-PUB-961014-192
Fossa on the pterotic where the hyomandibula articulates.
Ceri
2012-03-15T04:35:40Z
TAO:0005266
zebrafish_anatomy
ZFA:0005630
pterotic fossa
Fossa on the pterotic where the hyomandibula articulates.
ZFIN:ZDB-PUB-961014-192
Fibrous joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic.
Ceri
2012-03-20T05:02:00Z
TAO:0005268
zebrafish_anatomy
ZFA:0005631
preopercle horizontal limb-symplectic joint
Fibrous joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Fibrous joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula.
Ceri
2012-03-20T05:04:12Z
TAO:0005278
zebrafish_anatomy
ZFA:0005632
preopercle vertical limb-hyomandibula joint
Fibrous joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Skeletal element which is part of lepidotrichium articulating with other lepidotrichium segments by lepidotrichium joints.
Ceri
2012-04-06T02:21:01Z
zebrafish_anatomy
ZFA:0005633
lepidotrichium segment
Skeletal element which is part of lepidotrichium articulating with other lepidotrichium segments by lepidotrichium joints.
GOC:cvs
ORCiD:0000-0002-2244-7917
Joint that articulates segments of the fin ray.
Ceri
2012-04-06T02:22:29Z
intra-ray joint
zebrafish_anatomy
ZFA:0005634
lepidotrichium joint
Joint that articulates segments of the fin ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-000803-4
Odontoid tissue formed of a loose matrix of collagen. The fibrils of the predentine are homogeneously distributed and preferentially oriented along the long axis of the tooth. They are of variable thickness, measuring from 50 to 100 nm in diameter.
Ceri
2012-04-19T02:42:59Z
pre-dentine
predentin
zebrafish_anatomy
ZFA:0005635
predentine
Odontoid tissue formed of a loose matrix of collagen. The fibrils of the predentine are homogeneously distributed and preferentially oriented along the long axis of the tooth. They are of variable thickness, measuring from 50 to 100 nm in diameter.
ZFIN:ZDB-PUB-001208-4
Ligament that connects the intercalarium to the anterior process of the tripus and the scaphium.
Ceri
2012-04-19T04:04:31Z
zebrafish_anatomy
ZFA:0005636
interossicular ligament
Ligament that connects the intercalarium to the anterior process of the tripus and the scaphium.
ZFIN:ZDB-PUB-031103-13
ZFIN:ZDB-PUB-120214-1
Ligament that connects one rib to another.
Ceri
2012-04-19T04:20:23Z
TAO:0001972
zebrafish_anatomy
ZFA:0005637
intercostal ligament
Ligament that connects one rib to another.
TAO:curator
Ligaments that runs from the parapophyses of the anteriormost centrum to the exoccipital. There are two scapulo-vertebral ligaments in zebrafish.
Ceri
2012-04-24T12:23:51Z
Baudelot's ligaments
scapulo-vertebral ligaments
zebrafish_anatomy
ZFA:0005638
scapulo-vertebral ligament
Ligaments that runs from the parapophyses of the anteriormost centrum to the exoccipital. There are two scapulo-vertebral ligaments in zebrafish.
ZFIN:ZDB-PUB-961014-192
scapulo-vertebral ligaments
Ligament that runs from the ventral third of the supracleithrum to the exoccipital.
Ceri
2012-04-24T12:25:49Z
Baudelot's ligament
zebrafish_anatomy
ZFA:0005639
supracleithrum-vertebral ligament
Ligament that runs from the ventral third of the supracleithrum to the exoccipital.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Ligament that run from the dorsal tip of the cleithrum to the exoccipital.
Ceri
2012-04-24T12:26:31Z
Baudelot's ligament
zebrafish_anatomy
ZFA:0005640
cleithrum-vertebral ligament
Ligament that run from the dorsal tip of the cleithrum to the exoccipital.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Ligament that connects the dentary to the maxilla.
Ceri
2012-04-24T01:00:12Z
zebrafish_anatomy
ZFA:0005641
maxillo-mandibular ligament
Ligament that connects the dentary to the maxilla.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Ligament that connects the rostral process of the maxilla to the kinethmoid.
Ceri
2012-04-24T01:00:52Z
zebrafish_anatomy
ZFA:0005642
maxillo-rostroid ligament
Ligament that connects the rostral process of the maxilla to the kinethmoid.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Ligament that, in the adult, attaches the premaxilla to its counterpart at the midline and the kinethmoid posterodorsally.
Ceri
2012-04-24T01:03:14Z
zebrafish_anatomy
ZFA:0005643
premaxillo-rostroid ligament
Ligament that, in the adult, attaches the premaxilla to its counterpart at the midline and the kinethmoid posterodorsally.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
The ligament that connects the anteroventral tips of ceratobranchials 5 medially.
Ceri
2012-04-24T01:03:58Z
zebrafish_anatomy
ZFA:0005644
ceratobranchial 5 ligament
The ligament that connects the anteroventral tips of ceratobranchials 5 medially.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Short ligament that runs from the hooked anterior end of the supracleithrum to the intercalar.
Ceri
2012-04-24T01:04:45Z
zebrafish_anatomy
ZFA:0005645
supracleithrum-intercalar ligament
Short ligament that runs from the hooked anterior end of the supracleithrum to the intercalar.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Ligament that connects the preopercle to the retroarticular anteroventrally.
Ceri
2012-04-24T01:05:19Z
zebrafish_anatomy
ZFA:0005646
preopercle-retroarticular ligament
Ligament that connects the preopercle to the retroarticular anteroventrally.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Dense regular connective tissue that connects muscle to bone.
Ceri
2012-04-24T02:02:48Z
VSAO:0000073
zebrafish_anatomy
ZFA:0005647
tendon
Dense regular connective tissue that connects muscle to bone.
VSAO:curator
Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired.
Ceri
2012-04-24T05:24:57Z
TAO:0001679
zebrafish_anatomy
ZFA:0005648
mesethmoid-lateral ethmoid joint
Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired.
TAO:curator
ZFIN:ZDB-PUB-961014-192
Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired.
Ceri
2012-04-24T05:26:11Z
TAO:0001680
zebrafish_anatomy
ZFA:0005649
mesethmoid-vomer joint
Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired.
TAO:curator
Adductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane.
Ceri
2012-05-08T03:51:06Z
zebrafish_anatomy
ZFA:0005650
primitive pectoral fin adductor
Adductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
Abductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane.
Ceri
2012-05-08T03:59:41Z
zebrafish_anatomy
ZFA:0005651
primitive pectoral fin abductor
Abductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050920-7
Layers of broad flat tendons.
Ceri
2012-06-15T10:41:21Z
aponeuroses
zebrafish_anatomy
ZFA:0005652
aponeurosis
Layers of broad flat tendons.
GOC:cvs
ORCiD:0000-0002-2244-7917
aponeuroses
Portion of tissue in the vagal lobe that contains GABAergic sensory interneurons.
Ceri
2012-07-03T01:25:32Z
zebrafish_anatomy
ZFA:0005653
vagal sensory zone
Portion of tissue in the vagal lobe that contains GABAergic sensory interneurons.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120409-2
Portion of organism substance that is the liquid matrix of blood.
Ceri
2012-09-25T10:30:55Z
zebrafish_anatomy
ZFA:0005654
blood plasma
Portion of organism substance that is the liquid matrix of blood.
GOC:cvs
ORCiD:0000-0002-2244-7917
Endochondral process of the autopalatine that forms the socket of the autopalatine-preethmoid joint.
Ceri
2012-09-25T03:42:27Z
zebrafish_anatomy
ZFA:0005655
anterior ventromedial process of autopalatine
Endochondral process of the autopalatine that forms the socket of the autopalatine-preethmoid joint.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-192
Synovial, ball and socket joint that articulates the autopalatine and the preethmoid.
Ceri
2012-09-25T03:47:27Z
zebrafish_anatomy
ZFA:0005656
autopalatine-preethmoid joint
Synovial, ball and socket joint that articulates the autopalatine and the preethmoid.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Endochondral bone part of autopalatine that extends towards the first infraorbital.
Ceri
2012-09-25T03:55:15Z
zebrafish_anatomy
ZFA:0005657
anterior lateral process of autopalatine
Endochondral bone part of autopalatine that extends towards the first infraorbital.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-192
Portion of organism substance found in the lymphatic system. Lymph usually consists of interstitial fluid that has made its way into the lymphatic system.
Ceri
2012-11-28T03:32:48Z
zebrafish_anatomy
ZFA:0005658
lymph
Portion of organism substance found in the lymphatic system. Lymph usually consists of interstitial fluid that has made its way into the lymphatic system.
GOC:cvs
ORCiD:0000-0002-2244-7917
UBERON:curator
Thin layer of loose connective tissue which lies beneath the intestinal epithelium. The intestinal lamina propria is less complex then the corresponding mammalian tissue.
Ceri
2013-03-07T12:15:28Z
zebrafish_anatomy
ZFA:0005659
intestinal lamina propria mucosa
Thin layer of loose connective tissue which lies beneath the intestinal epithelium. The intestinal lamina propria is less complex then the corresponding mammalian tissue.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050120-6
Multi-tissue structure of the intestine comprising of the intestinal epithelium and the intestinal lamina propria mucosa.
Ceri
2013-03-07T12:18:22Z
zebrafish_anatomy
ZFA:0005660
intestinal mucosa
Multi-tissue structure of the intestine comprising of the intestinal epithelium and the intestinal lamina propria mucosa.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050120-6
Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve.
Ceri
2013-03-19T02:15:11Z
zebrafish_anatomy
ZFA:0005661
olfactory bulb glomerulus
Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Bilaterally-paired nerve connecting each segment of the spinal cord to the limbs and organs.
Ceri
2013-03-19T04:04:36Z
zebrafish_anatomy
ZFA:0005662
spinal nerve
Bilaterally-paired nerve connecting each segment of the spinal cord to the limbs and organs.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1247
ZFIN:ZDB-PUB-961014-814
Dorsal branch of the spinal nerve, coursing dorsally and caudally between the muscle and the vertebrae. It remains in the center of the muscle segment and could be followed to the dorsal aspect of the muscle. MiP primary motoneuron axons extend in this branch.
Ceri
2013-03-19T04:08:16Z
dorsal nerve
zebrafish_anatomy
ZFA:0005663
dorsal spinal nerve
Dorsal branch of the spinal nerve, coursing dorsally and caudally between the muscle and the vertebrae. It remains in the center of the muscle segment and could be followed to the dorsal aspect of the muscle. MiP primary motoneuron axons extend in this branch.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1247
ZFIN:ZDB-PUB-961014-814
Ventral branch of the spinal nerve that projects toward the lateral surface of the myotome, initially extending parallel to the horizontal myoseptum. RoP primary motoneuron axons extend in this branch.
Ceri
2013-03-19T04:09:27Z
lateral nerve
zebrafish_anatomy
ZFA:0005664
lateral spinal nerve
Ventral branch of the spinal nerve that projects toward the lateral surface of the myotome, initially extending parallel to the horizontal myoseptum. RoP primary motoneuron axons extend in this branch.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1247
ZFIN:ZDB-PUB-961014-814
Ventral spinal nerve branch that projects to the ventral myotome. The axon of the CaP primary motoneuron extends in this branch.
Ceri
2013-03-19T04:11:19Z
ventral nerve
zebrafish_anatomy
ZFA:0005665
ventral spinal nerve
Ventral spinal nerve branch that projects to the ventral myotome. The axon of the CaP primary motoneuron extends in this branch.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1247
Ventral spinal nerve sub-branch that runs near the rostral end of the myotome near the vertical myoseptum.
Ceri
2013-03-19T04:13:53Z
zebrafish_anatomy
ZFA:0005666
ventral spinal nerve septal branch
Ventral spinal nerve sub-branch that runs near the rostral end of the myotome near the vertical myoseptum.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1247
Ventral spinal nerve sub-branch that projects ventrally in the rostro-caudal center of the myotome. The axon of the CaP primary motoneuron extends in this branch.
Ceri
2013-03-19T04:14:46Z
zebrafish_anatomy
ZFA:0005667
ventral spinal nerve median branch
Ventral spinal nerve sub-branch that projects ventrally in the rostro-caudal center of the myotome. The axon of the CaP primary motoneuron extends in this branch.
ZFIN:ZDB-PUB-961014-1247
ZFIN:ZDB-PUB-961014-814
Multi-tissue structure part of the olfactory bulb comprised of ciliated and microvillous olfactory sensory neurons projections that form specialized neuropilar regions comprised of olfactory sensor axons and the dendrites of olfactory bulb neurons.
Ceri
2013-04-29T11:55:43Z
glomerular precursors
zebrafish_anatomy
ZFA:0005668
olfactory bulb protoglomerulus
Multi-tissue structure part of the olfactory bulb comprised of ciliated and microvillous olfactory sensory neurons projections that form specialized neuropilar regions comprised of olfactory sensor axons and the dendrites of olfactory bulb neurons.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120330-2
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. The neurons composing lateral protoglomeruli respond to amino acid stimuli.
Ceri
2013-04-29T01:58:36Z
lateral protoglomeruli
zebrafish_anatomy
ZFA:0005669
lateral protoglomerulus
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. The neurons composing lateral protoglomeruli respond to amino acid stimuli.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050617-6
ZFIN:ZDB-PUB-980729-35
lateral protoglomeruli
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries.
Ceri
2013-04-29T02:06:50Z
zebrafish_anatomy
ZFA:0005670
central zone protoglomerulus
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Mediates the signals produced in response to bile acids.
Ceri
2013-04-29T02:10:49Z
zebrafish_anatomy
ZFA:0005671
medial protoglomerulus
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Mediates the signals produced in response to bile acids.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050617-6
ZFIN:ZDB-PUB-980729-35
Single large glomerulus located in the ventral posterior region of the maturing glomerular layer of the olfactory bulb.
Ceri
2013-04-29T02:17:00Z
zebrafish_anatomy
VPG
ZFA:0005672
ventral posterior glomerulus
Single large glomerulus located in the ventral posterior region of the maturing glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Central region of the glomerular layer of the olfactory bulb.
Ceri
2013-04-29T02:25:20Z
zebrafish_anatomy
ZFA:0005673
central zone olfactory bulb
Central region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Dorsal region of the glomerular layer of the olfactory bulb.
Ceri
2013-04-29T02:26:28Z
zebrafish_anatomy
ZFA:0005674
dorsal zone olfactory bulb
Dorsal region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Lateral region of the glomerular layer of the olfactory bulb. The lateral region of the olfactory bulb consisted of morphologically diverse glomeruli and a diffuse aggregate of OSN axons, the lateral plexus.
Ceri
2013-04-29T02:27:13Z
zebrafish_anatomy
ZFA:0005675
lateral zone olfactory bulb
Lateral region of the glomerular layer of the olfactory bulb. The lateral region of the olfactory bulb consisted of morphologically diverse glomeruli and a diffuse aggregate of OSN axons, the lateral plexus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Medial region of the glomerular layer of the olfactory bulb.
Ceri
2013-04-29T02:28:47Z
zebrafish_anatomy
ZFA:0005676
medial zone olfactory bulb
Medial region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Ventral region of the glomerular layer of the olfactory bulb.
Ceri
2013-04-29T02:29:39Z
zebrafish_anatomy
ZFA:0005677
ventral zone olfactory bulb
Ventral region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Lateral region of the dorsal zone of the olfactory bulb. Glomeruli in this zone are tightly clustered in both male and female fish.
Ceri
2013-05-06T04:46:27Z
zebrafish_anatomy
ZFA:0005678
dorsolateral zone olfactory bulb
Lateral region of the dorsal zone of the olfactory bulb. Glomeruli in this zone are tightly clustered in both male and female fish.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050523-2
ZFIN:ZDB-PUB-101222-42
ZFIN:ZDB-PUB-120516-14
Medial portion of the ventral region of the glomerular layer of the olfactory bulb.
Ceri
2013-05-07T09:59:45Z
zebrafish_anatomy
ZFA:0005679
ventromedial zone olfactory bulb
Medial portion of the ventral region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Anterior portion of the ventral region of the glomerular layer of the olfactory bulb. In the ventroanterior zone there are typically seven small glomeruli located 11-20 micrometers beneath the superficial axon bundles The ganglion differed conspicuously in sizes, shapes, and distribution, and were not individually identifiable.
Ceri
2013-05-07T10:03:15Z
zebrafish_anatomy
vaGx
ZFA:0005680
ventroanterior zone of olfactory bulb
Anterior portion of the ventral region of the glomerular layer of the olfactory bulb. In the ventroanterior zone there are typically seven small glomeruli located 11-20 micrometers beneath the superficial axon bundles The ganglion differed conspicuously in sizes, shapes, and distribution, and were not individually identifiable.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Posterior portion of the ventral region of the glomerular layer of the olfactory bulb.
Ceri
2013-05-07T10:22:38Z
zebrafish_anatomy
ZFA:0005681
ventroposterior zone olfactory bulb
Posterior portion of the ventral region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Dorsal part of the medial region of the glomerular layer of the olfactory bulb.
Ceri
2013-05-07T01:37:59Z
zebrafish_anatomy
ZFA:0005682
mediodorsal zone of the olfactory bulb
Dorsal part of the medial region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
Anterior portion of the medial region of the glomerular layer of the olfactory bulb.
Ceri
2013-05-07T01:39:48Z
medial anterior zone olfactory bulb
zebrafish_anatomy
ZFA:0005683
anteromedial zone olfactory bulb
Anterior portion of the medial region of the glomerular layer of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
Glomerulus located between ventromedial and medial olfactory bulb surfaces. The mpG is generally elongated and innervated by a single thick axon.
Ceri
2013-05-07T01:48:45Z
mpG
zebrafish_anatomy
ZFA:0005684
posteromedial glomerulus
Glomerulus located between ventromedial and medial olfactory bulb surfaces. The mpG is generally elongated and innervated by a single thick axon.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050523-2
ZFIN:ZDB-PUB-961014-62
Glomerulus located in the dorsal zone of the olfactory bulb. It is located in a stereotypic position near the posterior edge of the dorsal glomerular zone and stains with anti-calretinin.
Ceri
2013-05-21T02:25:26Z
dorsal glomerulus 1
zebrafish_anatomy
ZFA:0005685
dG1
Glomerulus located in the dorsal zone of the olfactory bulb. It is located in a stereotypic position near the posterior edge of the dorsal glomerular zone and stains with anti-calretinin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the dorsolateral zone of the olfactory bulb. Dorsalmost of glomeruli located along the caudal edge of the olfactory bulb.
Ceri
2013-05-21T02:34:12Z
dorsolateral glomerulus 1
zebrafish_anatomy
ZFA:0005686
dlG1
Glomerulus located in the dorsolateral zone of the olfactory bulb. Dorsalmost of glomeruli located along the caudal edge of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG1 and located along the caudal edge of the olfactory bulb.
Ceri
2013-05-21T02:38:24Z
dorsolateral glomerulus 2
zebrafish_anatomy
ZFA:0005687
dlG2
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG1 and located along the caudal edge of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG2 and located along the caudal edge of the olfactory bulb.
Ceri
2013-05-21T02:40:59Z
dorsolateral glomerulus 3
zebrafish_anatomy
ZFA:0005688
dlG3
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG2 and located along the caudal edge of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG3 and located along the caudal edge of the olfactory bulb.
Ceri
2013-05-21T02:42:35Z
zebrafish_anatomy
dorsolateral glomerulus 4
ZFA:0005689
dlG4
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG3 and located along the caudal edge of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG4, and located along the caudal edge of the olfactory bulb.
Ceri
2013-05-21T02:45:36Z
zebrafish_anatomy
dorsolateral glomerulus 5
ZFA:0005690
dlG5
Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG4, and located along the caudal edge of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Anteriormost of the triplet of glomeruli strongly expressing calretinin.
Ceri
2013-05-21T03:10:31Z
ventral triplet glomerulus 1
ventromedial glomerulus 1
zebrafish_anatomy
ZFA:0005691
vmG1
Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Anteriormost of the triplet of glomeruli strongly expressing calretinin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posterior to vmG1 in the triplet of glomeruli strongly expressing calretinin.
Ceri
2013-05-21T03:17:25Z
ventral triplet glomerulus 2
ventromedial glomerulus 2
zebrafish_anatomy
ZFA:0005692
vmG2
Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posterior to vmG1 in the triplet of glomeruli strongly expressing calretinin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posteriormost glomerulus in the triplet of glomeruli strongly expressing calretinin.
Ceri
2013-05-21T03:19:23Z
ventral triplet glomerulus 3
ventromedial glomerulus 3
zebrafish_anatomy
ZFA:0005693
vmG3
Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posteriormost glomerulus in the triplet of glomeruli strongly expressing calretinin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to the triplet of ventromedial glomeruli strongly expressing calretinin.
Ceri
2013-05-21T03:24:43Z
ventromedial glomerulus 4
zebrafish_anatomy
ZFA:0005694
vmG4
Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to the triplet of ventromedial glomeruli strongly expressing calretinin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4.
Ceri
2013-05-21T03:26:20Z
ventromedial glomerulus 5
zebrafish_anatomy
ZFA:0005695
vmG5
Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4 adjacent to vmG5.
Ceri
2013-05-21T03:27:26Z
ventromedial glomerulus 6
zebrafish_anatomy
ZFA:0005696
vmG6
Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4 adjacent to vmG5.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the ventromedial zone of the olfactory bulb. vmG7 is located anteriorly to vmG1-3 and vmG4-6.
Ceri
2013-05-21T03:31:32Z
ventromedial glomerulus 7
zebrafish_anatomy
ZFA:0005697
vmG7
Glomerulus located in the ventromedial zone of the olfactory bulb. vmG7 is located anteriorly to vmG1-3 and vmG4-6.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Group of glomerulus located in the ventromedial zone of the olfactory bulb The vmGx group, is located 10-50 micrometers from the ventral surface of the olfactory bulb. And were located anywhere between the posteroventral and anteroventral regions of the olfactory bulb. It was not possible to unambiguously identify the vmGx because they displayed varying distributions and numbers in the olfactory bulbs of different animals.
Ceri
2013-05-21T03:34:17Z
ventromedial glomerular group x
zebrafish_anatomy
ZFA:0005698
vmGx
Group of glomerulus located in the ventromedial zone of the olfactory bulb The vmGx group, is located 10-50 micrometers from the ventral surface of the olfactory bulb. And were located anywhere between the posteroventral and anteroventral regions of the olfactory bulb. It was not possible to unambiguously identify the vmGx because they displayed varying distributions and numbers in the olfactory bulbs of different animals.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Group of glomerulus located in the ventromedial zone of the olfactory bulb. A cluster of comparatively small glomeruli located near the midline between the two olfactory bulbs The glomeruli in the vmGy were among the smallest glomeruli in the olfactory bulb.
Ceri
2013-05-21T03:37:11Z
ventromedial glomerular group y
zebrafish_anatomy
ZFA:0005699
vmGy
Group of glomerulus located in the ventromedial zone of the olfactory bulb. A cluster of comparatively small glomeruli located near the midline between the two olfactory bulbs The glomeruli in the vmGy were among the smallest glomeruli in the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
One of two large glomeruli located in the medial side of the ventroposterior zone olfactory bulb.
Ceri
2013-05-21T03:46:05Z
ventroposterior glomerulus 1
zebrafish_anatomy
ZFA:0005700
vpG1
One of two large glomeruli located in the medial side of the ventroposterior zone olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
One of two large glomeruli located in the lateral side of the ventroposterior zone olfactory bulb.
Ceri
2013-05-21T03:47:52Z
ventroposterior glomerulus 2
zebrafish_anatomy
ZFA:0005701
vpG2
One of two large glomeruli located in the lateral side of the ventroposterior zone olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the lateral zone of the olfactory bulb. LG1 is surrounded by a diffuse aggregate of OSN axons.
Ceri
2013-05-21T04:11:01Z
glomerulus 1 of the lateral chain
lateral glomerulus 1
zebrafish_anatomy
ZFA:0005702
lg1
Glomerulus located in the lateral zone of the olfactory bulb. LG1 is surrounded by a diffuse aggregate of OSN axons.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the lateral zone of the olfactory bulb. Located on the caudal edge of the lateral glomerulus.
Ceri
2013-05-21T04:15:43Z
glomerulus 2 of the lateral chain
lateral glomerulus 2
lcG2
zebrafish_anatomy
ZFA:0005703
lG2
Glomerulus located in the lateral zone of the olfactory bulb. Located on the caudal edge of the lateral glomerulus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the dorsoanterior region of the lateral zone of the olfactory bulb. Expresses calretinin.
Ceri
2013-05-21T04:18:03Z
glomerulus 3 of the lateral chain
lateral glomerulus 3
lcG3
zebrafish_anatomy
ZFA:0005704
lG3
Glomerulus located in the dorsoanterior region of the lateral zone of the olfactory bulb. Expresses calretinin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the lateral zone of the olfactory bulb.
Ceri
2013-05-22T11:07:13Z
glomerulus 4 of the lateral chain
lateral glomerulus 4
zebrafish_anatomy
lcG4
ZFA:0005705
lG4
Glomerulus located in the lateral zone of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
Glomerulus located in the lateral zone of the olfactory bulb. LG5 is surrounded by a diffuse aggregate of OSN axons.
Ceri
2013-05-22T11:11:41Z
glomerulus 5 of the lateral chain
lcG5
zebrafish_anatomy
lateral glomerulus 5
ZFA:0005706
lg5
Glomerulus located in the lateral zone of the olfactory bulb. LG5 is surrounded by a diffuse aggregate of OSN axons.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Group of glomerulus located in the lateral region of the olfactory bulb. The glomeruli that compose lGx are smaller than the lG1-6 and varied in shape, sizes, and locations between olfactory bulbs of the same and different animals. The lGx were located either along the ventral edge of the lateral group or below the lateral olfactory bulb surface.
Ceri
2013-05-22T11:16:21Z
zebrafish_anatomy
ZFA:0005707
lGx
Group of glomerulus located in the lateral region of the olfactory bulb. The glomeruli that compose lGx are smaller than the lG1-6 and varied in shape, sizes, and locations between olfactory bulbs of the same and different animals. The lGx were located either along the ventral edge of the lateral group or below the lateral olfactory bulb surface.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the lateral zone of the olfactory bulb. LG6 is located on the ventroposterior edge of the lateral group.
Ceri
2013-05-22T11:19:31Z
lateral glomerulus 6
lvpG
zebrafish_anatomy
ZFA:0005708
lg6
Glomerulus located in the lateral zone of the olfactory bulb. LG6 is located on the ventroposterior edge of the lateral group.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the mediodorsal zone of the olfactory bulb. It lies caudal to mdG5 and mdG6 and rostral of mdG3.
Ceri
2013-05-22T11:49:49Z
mdpG1
mediodorsal glomerulus 1
mediodorsal posterior glomerulus 1
zebrafish_anatomy
ZFA:0005709
mdG1
Glomerulus located in the mediodorsal zone of the olfactory bulb. It lies caudal to mdG5 and mdG6 and rostral of mdG3.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus expresses a S100 protein. It is the most posterior-caudal of the mediodorsal glomeruli.
Ceri
2013-05-22T11:53:33Z
mdpG2
mediodorsal glomerulus 2
mediodorsal posterior glomerulus 2
zebrafish_anatomy
ZFA:0005710
mdG2
Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus expresses a S100 protein. It is the most posterior-caudal of the mediodorsal glomeruli.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the mediodorsal zone of the olfactory bulb. Glomerulus that lies ventral to mdG2 on the caudal edge of the mediodorsal glomeruli.
Ceri
2013-05-22T11:54:46Z
mediodorsal glomerulus 3
zebrafish_anatomy
ZFA:0005711
mdG3
Glomerulus located in the mediodorsal zone of the olfactory bulb. Glomerulus that lies ventral to mdG2 on the caudal edge of the mediodorsal glomeruli.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the mediodorsal zone of the olfactory bulb. Positioned between mdG2 and mdG5 on the dorsal edge of the medial dorsal glomerular cluster.
Ceri
2013-05-22T11:56:36Z
mediodorsal glomerulus 4
zebrafish_anatomy
ZFA:0005712
mdG4
Glomerulus located in the mediodorsal zone of the olfactory bulb. Positioned between mdG2 and mdG5 on the dorsal edge of the medial dorsal glomerular cluster.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the mediodorsal zone of the olfactory bulb. . This glomerulus expresses a protein that cross reacts with antibodies raised against GNAO1. It is the dorsal to mdG6 on the rostral edge of the mediodorsal cluster.
Ceri
2013-05-22T11:57:20Z
mediodorsal glomerulus 5
zebrafish_anatomy
ZFA:0005713
mdG5
Glomerulus located in the mediodorsal zone of the olfactory bulb. . This glomerulus expresses a protein that cross reacts with antibodies raised against GNAO1. It is the dorsal to mdG6 on the rostral edge of the mediodorsal cluster.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus is the most ventral glomerulus in the mediodorsal cluster.
Ceri
2013-05-22T11:58:01Z
mediodorsal glomerulus 6
zebrafish_anatomy
ZFA:0005714
mdG6
Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus is the most ventral glomerulus in the mediodorsal cluster.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Glomerulus located in the anteromedial zone of the olfactory bulb.
Ceri
2013-05-22T12:02:52Z
medial anterior glomerulus 1
zebrafish_anatomy
maG
ZFA:0005715
maG1
Glomerulus located in the anteromedial zone of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
Group of small glomeruli located in the anteromedial zone of the olfactory bulb. The arrangements of glomeruli maGx varies between animals and they can't be identified as individual units.
Ceri
2013-05-22T12:04:40Z
zebrafish_anatomy
medial anterior glomeruli
ZFA:0005716
maGx
Group of small glomeruli located in the anteromedial zone of the olfactory bulb. The arrangements of glomeruli maGx varies between animals and they can't be identified as individual units.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120516-14
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsolateral protoglomerulus located in the lateral region of the olfactory bulb.
Ceri
2013-05-22T03:52:20Z
zebrafish_anatomy
LG1
ZFA:0005717
lateral protoglomerulus 1
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsolateral protoglomerulus located in the lateral region of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventromedial protoglomerulus located in the lateral region of the olfactory bulb.
Ceri
2013-05-22T04:06:52Z
zebrafish_anatomy
LG2
ZFA:0005718
lateral protoglomerulus 2
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventromedial protoglomerulus located in the lateral region of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsomedial protoglomerulus located in the lateral region of the olfactory bulb.
Ceri
2013-05-22T04:08:18Z
zebrafish_anatomy
LG3
ZFA:0005719
lateral protoglomerulus 3
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsomedial protoglomerulus located in the lateral region of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventrolateral protoglomerulus located in the lateral region of the olfactory bulb.
Ceri
2013-05-22T04:08:37Z
zebrafish_anatomy
LG4
ZFA:0005720
lateral protoglomerulus 4
Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventrolateral protoglomerulus located in the lateral region of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most lateral protoglomerulus in the central zone.
Ceri
2013-05-22T05:13:36Z
CZ1
zebrafish_anatomy
ZFA:0005721
central zone protoglomerulus 1
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most lateral protoglomerulus in the central zone.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 1.
Ceri
2013-05-22T05:20:35Z
CZ2
zebrafish_anatomy
ZFA:0005722
central zone protoglomerulus 2
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 1.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 2.
Ceri
2013-05-22T05:21:01Z
CZ3
zebrafish_anatomy
ZFA:0005723
central zone protoglomerulus 3
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 2.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 3.
Ceri
2013-05-22T05:35:43Z
CZ4
zebrafish_anatomy
ZFA:0005724
central zone protoglomerulus 4
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 3.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most medial protoglomerulus in the central zone.
Ceri
2013-05-22T05:36:02Z
CZ5
zebrafish_anatomy
ZFA:0005725
central zone protoglomerulus 5
Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most medial protoglomerulus in the central zone.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most posterio-lateral of the medial protoglomeruli.
Ceri
2013-05-22T05:39:34Z
zebrafish_anatomy
MG1
ZFA:0005726
medial protoglomerulus 1
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most posterio-lateral of the medial protoglomeruli.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050617-6
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most dorsally located medial protoglomerulus and medial to protoglomerulus 1.
Ceri
2013-05-22T05:42:18Z
zebrafish_anatomy
MG2
ZFA:0005727
medial protoglomerulus 2
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most dorsally located medial protoglomerulus and medial to protoglomerulus 1.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050617-6
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Located between medial glomerulus 2 and medial glomerulus 4 along dorsal-ventral axis of the medial region of the olfactory bulb.
Ceri
2013-05-22T05:42:38Z
zebrafish_anatomy
MG3
ZFA:0005728
medial protoglomerulus 3
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Located between medial glomerulus 2 and medial glomerulus 4 along dorsal-ventral axis of the medial region of the olfactory bulb.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050617-6
ZFIN:ZDB-PUB-980729-35
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most ventral of the medial protoglomeruli.
Ceri
2013-05-22T05:42:57Z
zebrafish_anatomy
MG4
ZFA:0005729
medial protoglomerulus 4
Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most ventral of the medial protoglomeruli.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050617-6
ZFIN:ZDB-PUB-980729-35
Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs.
Ceri
2013-06-20T02:04:57Z
CL:0015000
cranial motoneuron
zebrafish_anatomy
ZFA:0005730
cranial motor neuron
Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs.
GOC:cvs
ORCiD:0000-0002-2244-7917
Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches.
Ceri
2013-06-20T02:06:26Z
CL:0005023
branchi motor neuron
special visceral motor neuron
zebrafish_anatomy
ZFA:0005731
branchiomotor neuron
Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches.
GOC:cvs
ORCiD:0000-0002-2244-7917
PMID:14699587
Cranial motor neurons are found in the hindbrain, and innervate parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems.
Ceri
2013-06-20T02:08:10Z
CL:0005025
general visceral motor neuron
zebrafish_anatomy
ZFA:0005732
visceromotor neuron
Cranial motor neurons are found in the hindbrain, and innervate parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems.
GOC:cvs
ORCiD:0000-0002-2244-7917
PMID:14699587
Cranial motor neurons found in the midbrain and hindbrain that innervates muscles that control eye and tongue.
Ceri
2013-06-20T02:09:35Z
CL:0005024
zebrafish_anatomy
ZFA:0005733
somatomotor neuron
Cranial motor neurons found in the midbrain and hindbrain that innervates muscles that control eye and tongue.
GOC:cvs
ORCiD:0000-0002-2244-7917
PMID:14699587
A system of osteocytes connected through canals within the vertebra. Osteocytes extend processes through canals within ossified bone. The lacunocanalicular system is poorly developed in zebrafish with most osteocytes having one or two cytoplasmic processes.
Ceri
2013-07-08T11:48:50Z
zebrafish_anatomy
ZFA:0005734
lacunocanalicular system
A system of osteocytes connected through canals within the vertebra. Osteocytes extend processes through canals within ossified bone. The lacunocanalicular system is poorly developed in zebrafish with most osteocytes having one or two cytoplasmic processes.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-22629-14
Anatomical space, part of the lacunocanalicular system that connects lacuna within bone tissue allowing osteocyte projections to connect.
Ceri
2013-07-08T12:10:17Z
zebrafish_anatomy
ZFA:0005735
lacunocanalicular canal
Anatomical space, part of the lacunocanalicular system that connects lacuna within bone tissue allowing osteocyte projections to connect.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-11518-14
Anatomical space a small cavity, in the matrix of bone tissue. Part of the lacunocanalicular system.
Ceri
2013-07-08T12:19:22Z
zebrafish_anatomy
ZFA:0005736
lacuna
Anatomical space a small cavity, in the matrix of bone tissue. Part of the lacunocanalicular system.
GOC:cvs
ORCiD:0000-0002-2244-7917
Multicellular structure composed of endodermal cells that forms a continuous rod along the anterior-posterior axis of the embryo in contact with the YSL. This rod will give rise to the endodermal components of the alimentary canal and its connected organs: liver, gall bladder pancreas and swim bladder. Does not have part pharyngeal endoderm.
Ceri
2013-07-23T03:03:23Z
zebrafish_anatomy
endodermal rod
intestinal anlage
ZFA:0005737
intestinal rod
Multicellular structure composed of endodermal cells that forms a continuous rod along the anterior-posterior axis of the embryo in contact with the YSL. This rod will give rise to the endodermal components of the alimentary canal and its connected organs: liver, gall bladder pancreas and swim bladder. Does not have part pharyngeal endoderm.
ZFIN:ZDB-PUB-030115-26
endodermal rod
ZFIN:ZDB-PUB-030115-26
intestinal anlage
ZFIN:ZDB-PUB-050120-6.
Portion of the intestinal rod that loops to left between 26-30hpf and gives rise to the intestinal bulb and liver and anterior pancreatic primordium. The endoderm at this stage is a compact mass of cells with little to no polarization.
Ceri
2013-07-23T03:06:11Z
zebrafish_anatomy
ZFA:0005738
intestinal bulb primordium
Portion of the intestinal rod that loops to left between 26-30hpf and gives rise to the intestinal bulb and liver and anterior pancreatic primordium. The endoderm at this stage is a compact mass of cells with little to no polarization.
ZFIN:ZDB-PUB-031103-19
A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, has a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules.
Ceri
2013-07-29T10:13:45Z
CL:0002064
zebrafish_anatomy
ZFA:0005739
pancreatic acinar cell
A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, has a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules.
GOC:tfm
ZFIN:ZDB-PUB-050623-3
A cuboidal epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types.
Ceri
2013-07-29T10:16:32Z
CL:0002080
CAC
zebrafish_anatomy
ZFA:0005740
pancreatic centroacinar cell
A cuboidal epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types.
GOC:tfm
ZFIN:ZDB-PUB-050623-3
CAC
ZFIN:ZDB-PUB-050623-3
Portion of exocrine pancreas that is comprised of polarized cells containing apical zymogen granules that store digestive enzymes such as trypsin and chymotrypsin and abundant rough endoplasmic reticulum and mitochondria.
Ceri
2013-07-29T10:42:33Z
exocrine glands pancreas
pancreatic acini
zebrafish_anatomy
ZFA:0005741
pancreatic acinar gland
Portion of exocrine pancreas that is comprised of polarized cells containing apical zymogen granules that store digestive enzymes such as trypsin and chymotrypsin and abundant rough endoplasmic reticulum and mitochondria.
ZFIN:ZDB-PUB-050623-3
ZFIN:ZDB-PUB-070310-3
Polypeptide producing cell located in the islets of the pancreas.
Ceri
2013-07-29T10:59:29Z
CL:0002275
PP cell of pancreatic islet
PP-cell of pancreatic islet
pancreatic polypeptide-secreting cell
zebrafish_anatomy
pancreatic F cells
ZFA:0005742
pancreatic PP cell
Polypeptide producing cell located in the islets of the pancreas.
GOC:tfm
A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.
Ceri
2013-07-29T11:03:15Z
CL:0000173
D-cell of pancreatic islet
delta cell of islet
pancreatic delta cell
somatostatin-secreting pancreatic cell
zebrafish_anatomy
ZFA:0005743
pancreatic D cell
A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.
CL:tfm
Cells that form an epithelial-like sheath around the vacuolated inner notochord cells. Outer cells secrete a thick extracellular perinotochordal basement membrane.
Ceri
2013-07-30T04:09:49Z
CL:0007007
zebrafish_anatomy
notochord sheath cell
ZFA:0005744
notochord outer sheath cell
Cells that form an epithelial-like sheath around the vacuolated inner notochord cells. Outer cells secrete a thick extracellular perinotochordal basement membrane.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-130322-23
A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.
Ceri
2013-07-30T04:14:44Z
CL:0000293
zebrafish_anatomy
ZFA:0005745
structural cell
A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.
TAIR:sr
Structural cell of notochord that contain one large fluid-filled intracellular vacuole that occupies most of the cell volume.
Ceri
2013-07-30T04:15:56Z
chordocytes
zebrafish_anatomy
ZFA:0005746
notochord inner cell
Structural cell of notochord that contain one large fluid-filled intracellular vacuole that occupies most of the cell volume.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-130322-23
Lymph vessels that are located on either side of the PCV in the posterior region of the intestine.
Ceri
2013-07-31T10:44:16Z
SIL
zebrafish_anatomy
ZFA:0005747
supraintestinal lymphatic vessel
Lymph vessels that are located on either side of the PCV in the posterior region of the intestine.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Digestive duct within the pancreas. The pancreatic duct carries inactive digestive enzymes to the intestine.
Ceri
2013-08-01T02:17:49Z
zebrafish_anatomy
ZFA:0005748
intrapancreatic duct
Digestive duct within the pancreas. The pancreatic duct carries inactive digestive enzymes to the intestine.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050623-3
ZFIN:ZDB-PUB-101201-32
The portion of the intrapancreatic duct leading from the pancreatic acinar gland to the intralobular duct.
Ceri
2013-08-01T02:44:27Z
zebrafish_anatomy
ZFA:0005749
intercalated duct pancreas
The portion of the intrapancreatic duct leading from the pancreatic acinar gland to the intralobular duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050623-3
Intrapancreatic duct within a pancreatic lobe that connects all the intercalated duct with an interlobular duct. The intralobular duct is lined with cuboidal cells.
Ceri
2013-08-01T02:50:38Z
zebrafish_anatomy
ZFA:0005750
pancreatic intralobular duct
Intrapancreatic duct within a pancreatic lobe that connects all the intercalated duct with an interlobular duct. The intralobular duct is lined with cuboidal cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050623-3
Intrapancreatic duct that connects the intralobular duct to the main pancreatic duct.
Ceri
2013-08-01T02:53:52Z
zebrafish_anatomy
ZFA:0005751
pancreatic interlobular duct
Intrapancreatic duct that connects the intralobular duct to the main pancreatic duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
Intrapancreatic duct that connects to the interlobular ducts and drains into the extrapancreatic duct. The main duct may not be present in all larva and may develop in a segmented fashion.
Ceri
2013-08-01T02:55:07Z
zebrafish_anatomy
ZFA:0005752
main intrapancreatic duct
Intrapancreatic duct that connects to the interlobular ducts and drains into the extrapancreatic duct. The main duct may not be present in all larva and may develop in a segmented fashion.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050623-3
ZFIN:ZDB-PUB-070310-3
Cluster of acinar glands surrounding an intralobular duct.
Ceri
2013-08-01T03:16:34Z
exocrine lobule
zebrafish_anatomy
ZFA:0005753
Lobules are composed of multiple acini so are only apparent starting ~72hpf. Before 72hpf consider annotating to acinar gland.
pancreatic lobule
Cluster of acinar glands surrounding an intralobular duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050623-3
exocrine lobule
ZFIN:ZDB-PUB-050623-3
The primary islet is the first islet to develop.
Ceri
2013-08-01T04:05:06Z
principal islet
zebrafish_anatomy
ZFA:0005754
primary islet
The primary islet is the first islet to develop.
GOC:cvs
ORCiD:0000-0002-2244-7917
Portion of tissue composed of a group of cells in the pancreas producing insulin, glucagon and somatostatin. Part of the endocrine pancreas.
Ceri
2013-08-01T04:10:28Z
zebrafish_anatomy
ZFA:0005755
islet
Portion of tissue composed of a group of cells in the pancreas producing insulin, glucagon and somatostatin. Part of the endocrine pancreas.
GOC:cvs
ORCiD:0000-0002-2244-7917
Islets that develop after the primary islet. The secondary islets usually form around 7 dpf but can be induced to form as early as 5 dpf.
Ceri
2013-08-01T04:10:55Z
zebrafish_anatomy
ZFA:0005756
Start stage known to be after 3dpf.
secondary islet
Islets that develop after the primary islet. The secondary islets usually form around 7 dpf but can be induced to form as early as 5 dpf.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-130710-45
ZFIN:ZDB-PUB-140817-2
Portion of tissue composed of the signal-generating cells within the zona limitans intrathalamica.
Ceri
2013-08-02T03:20:09Z
MDO
mid-diencephalic organizer
zebrafish_anatomy
ZFA:0005757
mid diencephalic organizer
Portion of tissue composed of the signal-generating cells within the zona limitans intrathalamica.
GOC:DF
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-100621-4
ZFIN:ZDB-PUB-120105-73
Adipose tissue interspersed within the pancreatic acini.
Ceri
2013-09-23T10:03:51Z
zebrafish_anatomy
ZFA:0005758
No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad.
pancreatic fat
Adipose tissue interspersed within the pancreatic acini.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101011-51
Adipose tissue on the surface of the organs within the pleuroperitoneal cavity. Visceral adipocytes were observed posterior to the swim bladder and lining the visceral cavity.
Ceri
2013-09-23T10:23:07Z
zebrafish_anatomy
visceral fat deposit
ZFA:0005759
No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad.
visceral fat
Adipose tissue on the surface of the organs within the pleuroperitoneal cavity. Visceral adipocytes were observed posterior to the swim bladder and lining the visceral cavity.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101011-51
Adipose tissue in the cranium. Cranial adipocytes are located within the ventral wall of the cranium, situated between the brain and the esophagus.
Ceri
2013-09-23T10:26:44Z
zebrafish_anatomy
ZFA:0005760
No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad.
cranial fat
Adipose tissue in the cranium. Cranial adipocytes are located within the ventral wall of the cranium, situated between the brain and the esophagus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101011-51
Adipose tissue surrounding the eye.
Ceri
2013-09-23T10:59:00Z
zebrafish_anatomy
ZFA:0005761
No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad.
periorbital fat
Adipose tissue surrounding the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
Adipose tissue between muscle and integument.
Ceri
2013-09-23T11:20:54Z
zebrafish_anatomy
ZFA:0005762
subcutaneous fat
Adipose tissue between muscle and integument.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111012-7
Adipose tissue surrounding the esophagus.
Ceri
2013-09-23T11:32:46Z
zebrafish_anatomy
ZFA:0005763
esophageal fat
Adipose tissue surrounding the esophagus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101011-51
Adipose tissue deposited along the mandible.
Ceri
2013-09-23T11:33:07Z
jaw fat deposit
zebrafish_anatomy
ZFA:0005764
mandibular fat
Adipose tissue deposited along the mandible.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101011-51
Adipose tissue surrounding the heart.
Ceri
2013-09-23T11:41:21Z
pericardial fat deposit
zebrafish_anatomy
ZFA:0005765
pericardial fat
Adipose tissue surrounding the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090417-9
Adipose tissue that forms at the base of the pectoral fin.
Ceri
2013-09-23T11:42:40Z
pectoral fin plate deposit
zebrafish_anatomy
ZFA:0005766
pectoral fin plate fat
Adipose tissue that forms at the base of the pectoral fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090417-9
Subcutaneous adipose tissue deposit at the base of the caudal fin.
Ceri
2013-09-23T12:46:21Z
tail fin fat
zebrafish_anatomy
ZFA:0005767
caudal fin fat
Subcutaneous adipose tissue deposit at the base of the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-101011-51
Sensory neuron that extends a single axon shaft along the lateral white matter of the hindbrain and spinal cord. Numerous medially projecting branches are later formed and innervate a series of target nuclei along the anteroposterior axis of the hindbrain and spinal cord. The highly branched axons innervate the integument of the head. There are several subtypes with different afferent branching morphologies.
Ceri
2013-09-30T03:31:51Z
zebrafish_anatomy
ZFA:0005768
trigeminal sensory neuron
Sensory neuron that extends a single axon shaft along the lateral white matter of the hindbrain and spinal cord. Numerous medially projecting branches are later formed and innervate a series of target nuclei along the anteroposterior axis of the hindbrain and spinal cord. The highly branched axons innervate the integument of the head. There are several subtypes with different afferent branching morphologies.
ZFIN:ZDB-PUB-120106-15
A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa.
Ceri
2013-10-04T03:51:27Z
CL:0000018
zebrafish_anatomy
ZFA:0005769
spermatid
A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa.
CL:editor
Specialized olfactory support cell that surrounds crypt olfactory sensory neurons. There are one or two support cells for each crypt neuron. The cytoplasm of crypt neuron olfactory support cells is less electron dense then other support cells. They also bear numerous microvilli at their apical rim. When two supporting cells are present, they interdigitate with each other Mitochondria in crypt supporting cells are larger than those in the common supporting cells.
Ceri
2013-11-05T11:05:25Z
zebrafish_anatomy
ZFA:0005770
crypt neuron olfactory support cell
Specialized olfactory support cell that surrounds crypt olfactory sensory neurons. There are one or two support cells for each crypt neuron. The cytoplasm of crypt neuron olfactory support cells is less electron dense then other support cells. They also bear numerous microvilli at their apical rim. When two supporting cells are present, they interdigitate with each other Mitochondria in crypt supporting cells are larger than those in the common supporting cells.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060724-7
Portion of tissue that develops from the cranial neural crest and which cells populate a series of pharyngeal arches from which develops the support skeleton of the jaw and gills.
Ceri
2013-11-25T12:11:28Z
zebrafish_anatomy
ZFA:0005771
ectomesenchyme
Portion of tissue that develops from the cranial neural crest and which cells populate a series of pharyngeal arches from which develops the support skeleton of the jaw and gills.
ZFIN:ZDB-PUB-110609-14
ZFIN:ZDB-PUB-120517-11
Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
Ceri
2013-11-25T01:46:49Z
CL:00000365
zygote
zebrafish_anatomy
ZFA:0005772
fertilized egg
Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
GOC:tjm
An endothelial progenitor cell that participates in angiogenesis during development.
Ceri
2013-12-02T02:57:49Z
CL:0002546
zebrafish_anatomy
ZFA:0005773
embryonic blood vessel endothelial progenitor cell
An endothelial progenitor cell that participates in angiogenesis during development.
GOC:tjm
The external layer of the atrium bounding the atrial myocardium.
Ceri
2013-11-26T04:32:55Z
zebrafish_anatomy
ZFA:0005774
atrial epicardium
The external layer of the atrium bounding the atrial myocardium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-100112-31
Neuron that is part of the enteric nervous system.
Ceri
2014-03-06T12:36:50Z
CL:0007011
zebrafish_anatomy
ZFA:0005775
enteric neuron
Neuron that is part of the enteric nervous system.
CL:MAH
Parasympathetic neurons are part of the parasympathetic nervous system and the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic.
Ceri
2014-03-06T12:39:37Z
CL:0011102
zebrafish_anatomy
ZFA:0005776
parasympathetic neuron
Parasympathetic neurons are part of the parasympathetic nervous system and the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic.
ISBN:0080923437
Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides.
Ceri
2014-03-06T12:42:24Z
CL:0011103
zebrafish_anatomy
ZFA:0005777
sympathetic neuron
Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides.
ISBN:0080923437
A neuron that releases hypocretin as a neurotransmitter.
Ceri
2014-03-06T01:14:29Z
CL:0011109
zebrafish_anatomy
orexin secreting neuron
ZFA:0005778
hypocretin-secreting neuron
A neuron that releases hypocretin as a neurotransmitter.
PMID:23848055
Epithelium within the thymus where lymphocytes mature. Cells of the thymic epithelium have cytoplasm that appear devoid of most membrane bound organelles but contain bundles of cytoplasmic filaments, and frequent desmosomes occur between these epithelial cells. There are also secretory epithelial cells that contain a heterogeneous population of electron-dense, cytoplasmic granules and a well developed Golgi complex. Epithelial cysts are present after 3 weeks.
Ceri
2014-03-11T03:25:06Z
zebrafish_anatomy
ZFA:0005779
thymic epithelium
Epithelium within the thymus where lymphocytes mature. Cells of the thymic epithelium have cytoplasm that appear devoid of most membrane bound organelles but contain bundles of cytoplasmic filaments, and frequent desmosomes occur between these epithelial cells. There are also secretory epithelial cells that contain a heterogeneous population of electron-dense, cytoplasmic granules and a well developed Golgi complex. Epithelial cysts are present after 3 weeks.
ZFIN:ZDB-PUB-990414-60
Epithelium of the thymus primordium composed of cells of immature morphology. The immature thymic epithelium is continuous with the pharyngeal epithelium. The immature thymic epithelium is composed of electron-lucent epithelial cells of irregular or polygonal shape and contain numerous ribosomes, large electron-lucent mitochondria, and rough endoplasmic reticulum. Nascent desmosomes join these primitive epithelial cells together.
Ceri
2014-03-11T03:28:25Z
zebrafish_anatomy
ZFA:0005780
immature thymic epithelium
Epithelium of the thymus primordium composed of cells of immature morphology. The immature thymic epithelium is continuous with the pharyngeal epithelium. The immature thymic epithelium is composed of electron-lucent epithelial cells of irregular or polygonal shape and contain numerous ribosomes, large electron-lucent mitochondria, and rough endoplasmic reticulum. Nascent desmosomes join these primitive epithelial cells together.
ZFIN:ZDB-PUB-990414-60
Part of the gut where the pronephric tubules come together with the caudal end of the intestine attaching at 4dpf. The oviduct or sperm duct connect later.
Ceri
2014-03-12T09:34:37Z
zebrafish_anatomy
ZFA:0005781
cloaca
Part of the gut where the pronephric tubules come together with the caudal end of the intestine attaching at 4dpf. The oviduct or sperm duct connect later.
ZFIN:ZDB-PUB-060508-11
The juncture where the intestine empties into the cloaca.
Ceri
2014-03-12T09:39:01Z
gut opening
zebrafish_anatomy
ZFA:0005782
intestinal opening
The juncture where the intestine empties into the cloaca.
GOC:cvs
ORCiD:0000-0002-2244-7917
Epithelium lining the cloaca. The epithelium is a simple cuboidal epithelium at Prim-5.
Ceri
2014-03-12T10:18:40Z
zebrafish_anatomy
ZFA:0005783
cloacal epithelium
Epithelium lining the cloaca. The epithelium is a simple cuboidal epithelium at Prim-5.
ZFIN:ZDB-PUB-000505-17
Muscle cell which has as its direct parts myofilaments organized into sarcomeres.
Ceri
2014-03-18T03:14:29Z
CL:0000737
zebrafish_anatomy
ZFA:0005784
striated muscle cell
Muscle cell which has as its direct parts myofilaments organized into sarcomeres.
GOC:tfm
ISBN:0721662544
Striated muscle of the esophagus. Permits voluntary swallowing.
Ceri
2014-03-18T03:37:56Z
oesophageal striated muscle (OSM)
zebrafish_anatomy
ZFA:0005785
esophageal striated muscle
Striated muscle of the esophagus. Permits voluntary swallowing.
ZFIN:ZDB-PUB-130709-61
oesophageal striated muscle (OSM)
ZFIN:ZDB-PUB-130709-61
Wedge-shaped epidermal cell positioned along the apex of the developing fin fold. Each cleft cell retains a wedge-shaped form during fold formation and develops a basal cleft-shaped invagination. Invaginations are aligned in neighboring cleft cells so that these cells cap the distal boundary of the subepidermal space where collagenous extracellular fibres called actinotrichia run anteroposteriorly along the length of the fin fold.
Ceri
2014-03-25T09:31:29Z
zebrafish_anatomy
ZFA:0005786
cleft cell
Wedge-shaped epidermal cell positioned along the apex of the developing fin fold. Each cleft cell retains a wedge-shaped form during fold formation and develops a basal cleft-shaped invagination. Invaginations are aligned in neighboring cleft cells so that these cells cap the distal boundary of the subepidermal space where collagenous extracellular fibres called actinotrichia run anteroposteriorly along the length of the fin fold.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-195
Artery that runs along the midline from anterior to posterior regions of the hypothalamus and splits into two capillary branches (hyc). The formation of the artery is initiated at the hypophysis itself and extends anteriorly until it connects with the palatocerebral arteries at day 2.5.
Ceri
2014-04-03T10:42:12Z
zebrafish_anatomy
ZFA:0005787
hypophyseal artery
Artery that runs along the midline from anterior to posterior regions of the hypothalamus and splits into two capillary branches (hyc). The formation of the artery is initiated at the hypophysis itself and extends anteriorly until it connects with the palatocerebral arteries at day 2.5.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111027-47
ZFIN:ZDB-PUB-130222-26
Vein thats tarts posterior of the hypophysis and drains the hypophyseal capillaries. It empties into the primary head sinus.
Ceri
2014-04-03T10:47:03Z
zebrafish_anatomy
ZFA:0005788
hypophyseal vein
Vein thats tarts posterior of the hypophysis and drains the hypophyseal capillaries. It empties into the primary head sinus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-130222-26
Axon tract originating from the two hemispheres of the neurosecretory preoptic areas converging into the midline and terminating at the ventral part of the hypothalamus at the presumed location of the pituitary. Analogous to the supraopticohypophyseal tract in mammals.
Ceri
2014-04-03T11:19:03Z
preopticohypophyseal axon tract
zebrafish_anatomy
ZFA:0005789
preopticohypophyseal tract
Axon tract originating from the two hemispheres of the neurosecretory preoptic areas converging into the midline and terminating at the ventral part of the hypothalamus at the presumed location of the pituitary. Analogous to the supraopticohypophyseal tract in mammals.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-111027-47
Pair of capillaries that bilaterally encompass the hypophysis starting at the anterior aspect of the hypophysis (pituitary). Directly posterior to the pituitary, the two capillaries fuse with the hypophyseal vein.
Ceri
2014-04-03T11:27:53Z
zebrafish_anatomy
ZFA:0005790
hypophyseal capillary
Pair of capillaries that bilaterally encompass the hypophysis starting at the anterior aspect of the hypophysis (pituitary). Directly posterior to the pituitary, the two capillaries fuse with the hypophyseal vein.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-130222-26
Surface structure that is a keratinized epidermal appendages that is a contact organ and secondary sex organ.
Ceri
2014-05-15T03:26:12Z
zebrafish_anatomy
ZFA:0005791
breeding tubercle
Surface structure that is a keratinized epidermal appendages that is a contact organ and secondary sex organ.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
ZFIN:ZDB-PUB-140519-1
Surface structure that is a protrusion from the rostral end of the jaw, supported by the mandibular projection.
Ceri
2014-06-04T02:10:53Z
lateral projections lower jaw
zebrafish_anatomy
ZFA:0005792
jaw flap
Surface structure that is a protrusion from the rostral end of the jaw, supported by the mandibular projection.
ZFIN:ZDB-PUB-140317-29
ZFIN:ZDB-PUB-140519-1
Layer of smooth cells composing the outer layer of the breeding tubercle. Cells in this layer have a high keratin content, lamellar bodies, and condensed chromosomes. This layer is repeatedly shed and regenerated.
Ceri
2014-06-04T02:33:07Z
zebrafish_anatomy
ZFA:0005793
superficial layer of breeding tubercle
Layer of smooth cells composing the outer layer of the breeding tubercle. Cells in this layer have a high keratin content, lamellar bodies, and condensed chromosomes. This layer is repeatedly shed and regenerated.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
Cell layer that lies underneath the superficial layer of the breeding tubercle. Characterized by tight junctions within the layer.
Ceri
2014-06-04T02:46:01Z
zebrafish_anatomy
ZFA:0005794
second tier layer of breeding tubercle
Cell layer that lies underneath the superficial layer of the breeding tubercle. Characterized by tight junctions within the layer.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
Intermediate layer of the breeding tubercles characterized by cells with loose spinous organization connected to each other via desmosomes, but with wide extracellular spaces in between.
Ceri
2014-06-04T02:46:51Z
spinous keratinocyte layer
zebrafish_anatomy
ZFA:0005795
spinous layer of breeding tubercle
Intermediate layer of the breeding tubercles characterized by cells with loose spinous organization connected to each other via desmosomes, but with wide extracellular spaces in between.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
Layer of breeding tubercle proximal to basal lamina of the integument.
Ceri
2014-06-04T02:48:25Z
zebrafish_anatomy
ZFA:0005796
basal layer breeding tubercle
Layer of breeding tubercle proximal to basal lamina of the integument.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
Breeding tubercles along the surface of the pectoral fin lepidotrichium of males.
Ceri
2014-06-04T02:50:54Z
zebrafish_anatomy
ZFA:0005797
pectoral fin breeding tubercle
Breeding tubercles along the surface of the pectoral fin lepidotrichium of males.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
ZFIN:ZDB-PUB-140519-1
Surface structures composed of breeding tubercles arranged in a double row in the medial region on each side of the lower jaw.
Ceri
2014-06-04T02:56:48Z
zebrafish_anatomy
ZFA:0005798
jaw row breeding tubercle
Surface structures composed of breeding tubercles arranged in a double row in the medial region on each side of the lower jaw.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
ZFIN:ZDB-PUB-140519-1
Breeding tubercles that cover the surface of the jaw flap.
Ceri
2014-06-04T03:32:28Z
zebrafish_anatomy
ZFA:0005799
jaw flap breeding tubercle
Breeding tubercles that cover the surface of the jaw flap.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
ZFIN:ZDB-PUB-140519-1
Portion of organism substance that is located between the cap and second tier layers of the breeding tubercles. The lipid lamellae is composed of lipids.
Ceri
2014-06-04T04:00:53Z
zebrafish_anatomy
ZFA:0005800
extracellular lipid lamellae
Portion of organism substance that is located between the cap and second tier layers of the breeding tubercles. The lipid lamellae is composed of lipids.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140317-29
The interrenal vessel (IRV) is the blood vessels supplying the interrenal gland. It is formed by sprouting from the dorsal aorta. The development of the IRV is temporally and spatially correlated with the initiation interrenal gland formation. After traversing the interrenal tissue, the IRV connects to the posterior end segment of the anterior mesenteric artery where two branches of swim bladder arteries branched out. Angiogenic sprout is visible between 34 and 48 hpf with blood flow by 3dpf.
Ceri
2014-06-06T01:45:08Z
IRV
zebrafish_anatomy
ZFA:0005801
interrenal vessel
The interrenal vessel (IRV) is the blood vessels supplying the interrenal gland. It is formed by sprouting from the dorsal aorta. The development of the IRV is temporally and spatially correlated with the initiation interrenal gland formation. After traversing the interrenal tissue, the IRV connects to the posterior end segment of the anterior mesenteric artery where two branches of swim bladder arteries branched out. Angiogenic sprout is visible between 34 and 48 hpf with blood flow by 3dpf.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120905-5
Sprout from the dorsal aorta that develops into the interrenal vessel.
Ceri
2014-06-10T10:26:33Z
zebrafish_anatomy
ZFA:0005802
interrenal angiogenic sprout
Sprout from the dorsal aorta that develops into the interrenal vessel.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120905-5
Gelatinous substance surrounding the kinocila of the neuromast.
Ceri
2014-06-24T09:55:56Z
zebrafish_anatomy
ZFA:0005803
cupula
Gelatinous substance surrounding the kinocila of the neuromast.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-768
Efferent neuron where the cell body is located in the hindbrain reticular formation immediately adjacent to the medial longitudinal fascicle at the rostrocaudal level between the MiDl and the CaD and adjacent to the descending Mauthner axon. RELL dendrites are large and extend bilaterally into the ventrolateral neuropil. The ipsilateral dendrite reaches into a single area of the ventrolateral neuropil whereas the contralateral dendrite branches and extends into two different levels of the same rostrocaudal column of the ventrolateral neuropil. The axon emerges from the ventral part of the perikaryon courses a short distance rostrally to the level of the ROLE cells and then turns laterally from the CNS accompanying the root of the posterior lateral line nerve.
Ceri
2014-06-24T10:08:34Z
RELL neuron
zebrafish_anatomy
ZFA:0005804
rhombencephalic efferent neurons to the lateral line
Efferent neuron where the cell body is located in the hindbrain reticular formation immediately adjacent to the medial longitudinal fascicle at the rostrocaudal level between the MiDl and the CaD and adjacent to the descending Mauthner axon. RELL dendrites are large and extend bilaterally into the ventrolateral neuropil. The ipsilateral dendrite reaches into a single area of the ventrolateral neuropil whereas the contralateral dendrite branches and extends into two different levels of the same rostrocaudal column of the ventrolateral neuropil. The axon emerges from the ventral part of the perikaryon courses a short distance rostrally to the level of the ROLE cells and then turns laterally from the CNS accompanying the root of the posterior lateral line nerve.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-768
Efferent neuron located in the hindbrain. The axon of ROLE cells travels rostrally near the ipsilateral medial longitudinal fascicle to the level of the Mauthner cell where it turns laterally to exit with the eighth nerve. Outside the brain the axon continues ventrally to the base of the saccular macula in the ear then turns caudally to ender the ganglion of the posterior lateral line. A branch of the axon turns ventrally before the main axon enters the LLG. The branch goes ventrally along the wall of the otic capsule.
Ceri
2014-06-24T10:42:22Z
ROLE neuron
zebrafish_anatomy
ZFA:0005805
rhombencephalic octavolateral efferent neuron
Efferent neuron located in the hindbrain. The axon of ROLE cells travels rostrally near the ipsilateral medial longitudinal fascicle to the level of the Mauthner cell where it turns laterally to exit with the eighth nerve. Outside the brain the axon continues ventrally to the base of the saccular macula in the ear then turns caudally to ender the ganglion of the posterior lateral line. A branch of the axon turns ventrally before the main axon enters the LLG. The branch goes ventrally along the wall of the otic capsule.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-768
Efferent neurons located ventrally in the diencephalon. The dendrites extend into a large area of the diencephalic neuropil rostral, caudal, lateral and ventral to the cell body. The axon courses dorsally and then caudally through the midbrain. As the axon descends through the brain it gives off branches at several levels. One branch usually exits the brain with the posterior lateral line nerve. The axon can be traced into the cervical spinal cord.
Ceri
2014-06-24T11:50:49Z
DELL neuron
zebrafish_anatomy
ZFA:0005806
There may be 2 neuron types grouped under this name since there are some instances the axons were seen to exit with the eighth cranial nerve instead of the PLL nerve: ZDB-PUB-961014-768.
diencephalic efferent neurons to the lateral line
Efferent neurons located ventrally in the diencephalon. The dendrites extend into a large area of the diencephalic neuropil rostral, caudal, lateral and ventral to the cell body. The axon courses dorsally and then caudally through the midbrain. As the axon descends through the brain it gives off branches at several levels. One branch usually exits the brain with the posterior lateral line nerve. The axon can be traced into the cervical spinal cord.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-768
Anatomical space within the intestine where digestion normally occurs. The intestinal lumen begins as an interconnected web of small space at 43 hpf that over time remodels to form a single continuous tube at 68hpf. Lumen maturation proceeds from anterior to posterior along the intestine.
Ceri
2014-07-14T01:57:57Z
zebrafish_anatomy
gut lumen
ZFA:0005807
intestine lumen
Anatomical space within the intestine where digestion normally occurs. The intestinal lumen begins as an interconnected web of small space at 43 hpf that over time remodels to form a single continuous tube at 68hpf. Lumen maturation proceeds from anterior to posterior along the intestine.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140415-28
Transient cluster of cardiac progenitor cells that develops adjacent to the heart and migrates onto the heart to form the epicardium. Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole.
Ceri
2014-07-28T03:01:42Z
proepicardial organ
proepicardium
zebrafish_anatomy
ZFA:0005808
Appears after cardiac looping ~30hpf. Derived from mesoderm.
proepicardial cluster
Transient cluster of cardiac progenitor cells that develops adjacent to the heart and migrates onto the heart to form the epicardium. Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-080218-16
ZFIN:ZDB-PUB-140603-8
proepicardial organ
ZFIN:ZDB-PUB-080218-16
proepicardium
ZFIN:ZDB-PUB-140603-8
Network of heavily branched muscle in the atrium.
Ceri
2014-07-28T04:28:45Z
pectinate muscles
zebrafish_anatomy
ZFA:0005809
pectinate muscle
Network of heavily branched muscle in the atrium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-001026-2
pectinate muscles
Trabecular layer of the atrial myocardium.
Ceri
2014-07-28T04:35:49Z
zebrafish_anatomy
ZFA:0005810
trabecular layer of the atrium
Trabecular layer of the atrial myocardium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-121030-7
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart.
Ceri
2014-07-31T10:04:10Z
zebrafish_anatomy
ZFA:0005811
heart vasculature
Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
Artery that carries blood from the efferent branchial artery to the cardiac ventricle. The artery runs along the ventral surface of the bulbus arteriosus.
Ceri
2014-07-31T10:05:29Z
coronary vessel
zebrafish_anatomy
ZFA:0005812
coronary artery
Artery that carries blood from the efferent branchial artery to the cardiac ventricle. The artery runs along the ventral surface of the bulbus arteriosus.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010912-30
coronary vessel
ZFIN:ZDB-PUB-010912-30
Capillaries that innervate the subtrabecular layer of the heart.
Ceri
2014-07-31T10:09:35Z
zebrafish_anatomy
ZFA:0005813
coronary capillary
Capillaries that innervate the subtrabecular layer of the heart.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010912-30
Vein that carries blood from the coronary capillaries to the atrial chamber entering the atrium close to the atrioventricular region.
Ceri
2014-07-31T10:11:35Z
zebrafish_anatomy
ZFA:0005814
coronary vein
Vein that carries blood from the coronary capillaries to the atrial chamber entering the atrium close to the atrioventricular region.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010912-30
TARGET DEFINITION: Hindbrain interneurons that are part of the reticular formation. The T interneurons receive synaptic input from the Mauthner neuron, from unidentified axons in the mlf, and perhaps from trigeminal sensory fibers. . The axon is T-shaped the proximal segment courses to the midline of the brain and near the midline bifurcates to form an ascending rostral segment and a descending caudal segment. The rostral and caudal segments join the dorsal component of the MLF. The T interneurons are located caudal to CaD and appear to be bilaterally paired. They project to cranial and pectoral motor nuclei.
Ceri
2014-07-31T02:33:52Z
ZFA:0005182
TAO:0005182
T-interneuron
t-interneuron
zebrafish_anatomy
T shaped reticular neuron
cranial relay neuron
ZFA:0005815
This term is a leaf node in the zebrafish AO and is not in the CL.
T interneuron
TARGET DEFINITION: Hindbrain interneurons that are part of the reticular formation. The T interneurons receive synaptic input from the Mauthner neuron, from unidentified axons in the mlf, and perhaps from trigeminal sensory fibers. . The axon is T-shaped the proximal segment courses to the midline of the brain and near the midline bifurcates to form an ascending rostral segment and a descending caudal segment. The rostral and caudal segments join the dorsal component of the MLF. The T interneurons are located caudal to CaD and appear to be bilaterally paired. They project to cranial and pectoral motor nuclei.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-588
cranial relay neuron
ZFIN:ZDB-PUB-110110-13
Anterior longitudinal muscles of the dorsal fin. The dorsal fin protractor originates from the base of the first soft ray of the dorsal fin, extends along the midline just underneath the skin, and inserts at the posterior portion of the skull. Contracting the dorsal protractor will raise the fin.
Ceri
2014-10-27T12:59:02Z
protractor dorsalis
zebrafish_anatomy
ZFA:0005816
dorsal fin protractor
Anterior longitudinal muscles of the dorsal fin. The dorsal fin protractor originates from the base of the first soft ray of the dorsal fin, extends along the midline just underneath the skin, and inserts at the posterior portion of the skull. Contracting the dorsal protractor will raise the fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Anterior longitudinal muscles of the dorsal fin. That originates from the caudal end of the dorsal fin base, stretches along the midline between the right and left epaxial muscles, and inserts at the dorsal base of the tail fin. Contracting the dorsal retractor will lower the fin.
Ceri
2014-10-27T01:05:51Z
retractor dorsalis
zebrafish_anatomy
ZFA:0005817
dorsal fin retractor
Anterior longitudinal muscles of the dorsal fin. That originates from the caudal end of the dorsal fin base, stretches along the midline between the right and left epaxial muscles, and inserts at the dorsal base of the tail fin. Contracting the dorsal retractor will lower the fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
The layer of caudal fin musculature immediately under the integument that originate from the vertebral column and insert at the base of caudal fin rays.
Ceri
2014-10-29T04:13:54Z
zebrafish_anatomy
ZFA:0005818
superficial caudal fin musculature
The layer of caudal fin musculature immediately under the integument that originate from the vertebral column and insert at the base of caudal fin rays.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
The layer of caudal fin musculature immediately under the superficial caudal fin musculature that originate from the vertebral column and insert at the base of caudal fin rays. The three most caudal vertebrae and the hypurals serve as attachment sites for these muscles.
Ceri
2014-10-29T04:16:13Z
zebrafish_anatomy
ZFA:0005819
deep caudal fin musculature
The layer of caudal fin musculature immediately under the superficial caudal fin musculature that originate from the vertebral column and insert at the base of caudal fin rays. The three most caudal vertebrae and the hypurals serve as attachment sites for these muscles.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Paired, deep caudal fin muscles that arise broadly from the hypurals and extends dorsocaudally where the fiber bundles converge into a narrow insertion site on the 5th caudal fin ray.
Ceri
2014-10-30T09:51:20Z
adductor caudalis ventralis
zebrafish_anatomy
ACV
ZFA:0005820
ventral caudal adductor
Paired, deep caudal fin muscles that arise broadly from the hypurals and extends dorsocaudally where the fiber bundles converge into a narrow insertion site on the 5th caudal fin ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis ventralis and fans out to attach broadly in a region between the 12th and 16th caudal fin ray.
Ceri
2014-10-30T10:11:24Z
interfilamenti caudalis ventralis
zebrafish_anatomy
ICV
ZFA:0005821
ventral interfilamental caudal muscle
Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis ventralis and fans out to attach broadly in a region between the 12th and 16th caudal fin ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis dorsalis and fans out to attach broadly in a region between the 4th and 8th caudal fin ray.
Ceri
2014-10-30T10:14:35Z
interfilamenti caudalis dorsalis
zebrafish_anatomy
ICD
ZFA:0005822
dorsal interfilamental caudal muscle
Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis dorsalis and fans out to attach broadly in a region between the 4th and 8th caudal fin ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the dorsal tip of the caudal fin.
Ceri
2014-10-30T12:34:51Z
lateralis superficialis dorsalis
zebrafish_anatomy
LSD
ZFA:0005823
external lateral dorsal muscle
Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the dorsal tip of the caudal fin.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Paired superficial caudal fin muscle that is located ventrally and extends from the myoseptum to the ventral tip of the caudal fin where it attaches in the region of the second lowest (eighteenth) long fin ray.
Ceri
2014-10-30T12:44:54Z
lateralis profundus ventralis
zebrafish_anatomy
LPV
ZFA:0005824
deep lateral ventral muscle
Paired superficial caudal fin muscle that is located ventrally and extends from the myoseptum to the ventral tip of the caudal fin where it attaches in the region of the second lowest (eighteenth) long fin ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Paired superfical caudal fin muscle that is located dorsally and extends from the myoseptum to the dorsal tip of the caudal fin where it attaches in the region of the second upper long fin ray.
Ceri
2014-10-30T01:24:56Z
lateralis profundus dorsalis
zebrafish_anatomy
LPD
ZFA:0005825
deep lateral dorsal muscle
Paired superfical caudal fin muscle that is located dorsally and extends from the myoseptum to the dorsal tip of the caudal fin where it attaches in the region of the second upper long fin ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060623-21
Cardiac muscle located in the trabecular layer of the ventricle that is attached to the base of the AV and BV valves. It is similar to the papillary muscle in mammals and birds but, does not attach to the ends of the valve leaflets.
Ceri
2015-02-19T03:45:32Z
zebrafish_anatomy
ZFA:0005826
tri-tipped trabecula
Cardiac muscle located in the trabecular layer of the ventricle that is attached to the base of the AV and BV valves. It is similar to the papillary muscle in mammals and birds but, does not attach to the ends of the valve leaflets.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-121030-7
Cardiac muscle located in the trabecular layer of the ventricle that spans the central lumen near the ventricular apex. The transverse muscle band superficially resembles the septomarginal trabecula found in reptilian and mammalian hearts in that it spans the ventricle.
Ceri
2015-02-19T03:48:37Z
zebrafish_anatomy
ZFA:0005827
transverse band
Cardiac muscle located in the trabecular layer of the ventricle that spans the central lumen near the ventricular apex. The transverse muscle band superficially resembles the septomarginal trabecula found in reptilian and mammalian hearts in that it spans the ventricle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-121030-7
An olfactory receptor cells with apical microvilli. The pear shaped soma is located in the apical region of the olfactory epithelium. They project to a single glomerulus, mdG5.
Ceri
2015-02-20T10:55:06Z
kappe neuron
zebrafish_anatomy
ZFA:0005828
kappe olfactory receptor neuron
An olfactory receptor cells with apical microvilli. The pear shaped soma is located in the apical region of the olfactory epithelium. They project to a single glomerulus, mdG5.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140416-5
Vessel that drains aqueous humor from the eye.
Ceri
2015-02-23T10:20:30Z
zebrafish_anatomy
ZFA:0005829
ZDB-PUB-140728-8 says the canal has lymphatic-like.
Schlemm's canal
Vessel that drains aqueous humor from the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-140728-8
A cell of a hematopoietic lineage.
Ceri
2015-02-27T09:55:34Z
CL:0000988
haematopoietic cell
hemopoietic cell
zebrafish_anatomy
haemopoietic cell
ZFA:0005830
hematopoietic cell
A cell of a hematopoietic lineage.
CL:curator
Interconnected lymph vasculature in the anterior portion of the head.
Ceri
2015-04-21T03:16:49Z
zebrafish_anatomy
facial lymphatics
ZFA:0005831
facial lymphatic network
Interconnected lymph vasculature in the anterior portion of the head.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Superficial lymph vessel that is part of pharyngeal arch 3. The vessel sprouts from the lateral facial lymph vessel.
Ceri
2015-04-21T04:16:23Z
LAA1
zebrafish_anatomy
ZFA:0005832
lymphatic branchial arch 1
Superficial lymph vessel that is part of pharyngeal arch 3. The vessel sprouts from the lateral facial lymph vessel.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
LAA1
ZFIN:ZDB-PUB-120529-43
Superficial lymph vessel that is part of pharyngeal arch 4. The vessel sprouts from the lateral facial lymph vessel.
Ceri
2015-04-22T10:05:13Z
LAA2
zebrafish_anatomy
ZFA:0005833
lymphatic branchial arch 2
Superficial lymph vessel that is part of pharyngeal arch 4. The vessel sprouts from the lateral facial lymph vessel.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
LAA2
ZFIN:ZDB-PUB-120529-43
Superficial lymph vessel that is part of pharyngeal arch 5. The vessel sprouts from the lateral facial lymph vessel.
Ceri
2015-04-22T10:06:52Z
LAA3
zebrafish_anatomy
ZFA:0005834
lymphatic branchial arch 3
Superficial lymph vessel that is part of pharyngeal arch 5. The vessel sprouts from the lateral facial lymph vessel.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
LAA3
ZFIN:ZDB-PUB-120529-43
Superficial lymph vessel that is part of pharyngeal arch 6. The vessel sprouts from the lateral facial lymph vessel.
Ceri
2015-04-22T10:18:37Z
LAA4
zebrafish_anatomy
ZFA:0005835
lymphatic branchial arch 4
Superficial lymph vessel that is part of pharyngeal arch 6. The vessel sprouts from the lateral facial lymph vessel.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
LAA4
ZFIN:ZDB-PUB-120529-43
Lymphangiogenic sprout that originates from the common cardinal vein and extends along the primary head sinus.
Ceri
2015-04-22T12:15:12Z
FLS
zebrafish_anatomy
ZFA:0005836
Although a facial lymphatic vessel has previously been described using lymphangiography in 5-week-old zebrafish (Yaniv et al., 2006), we are not sure whether
this previously described vessel is connected to, or derived from, the FL network that we have identified (ZDB-PUB-120529-43).
facial lymphatic sprout
Lymphangiogenic sprout that originates from the common cardinal vein and extends along the primary head sinus.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Superfical lymph vessel part of the facial lymphatic network that develops from the facial lymphatic sprout. The lateral facial lymph vessel runs toward the mandibular arch and tracks around the eye toward the jaw.
Ceri
2015-04-22T12:41:36Z
LFL
lateral facial lymphatic
zebrafish_anatomy
ZFA:0005837
lateral facial lymph vessel
Superfical lymph vessel part of the facial lymphatic network that develops from the facial lymphatic sprout. The lateral facial lymph vessel runs toward the mandibular arch and tracks around the eye toward the jaw.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Facial lymphatic vessel that sprouts from the lateral facial lymph vessel. The path lies parallel to the posterior cerebral vein but is not in contact with a blood vessel.
Ceri
2015-04-22T02:06:44Z
otolithic lymphatic vessel
zebrafish_anatomy
ZFA:0005838
otolithic lymph vessel
Facial lymphatic vessel that sprouts from the lateral facial lymph vessel. The path lies parallel to the posterior cerebral vein but is not in contact with a blood vessel.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
otolithic lymphatic vessel
ZFIN:ZDB-PUB-120529-43
Facial lymph vessel that sprouts from the lateral facial lymph vessel. The path of the medial vessel runs ventromedially towards the ventral aorta.
Ceri
2015-04-23T01:49:47Z
MFL
medial facial lymphatic
zebrafish_anatomy
ZFA:0005839
medial facial lymph vessel
Facial lymph vessel that sprouts from the lateral facial lymph vessel. The path of the medial vessel runs ventromedially towards the ventral aorta.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Lymph vasculature surrounding the intestines.
Ceri
2015-04-30T11:15:28Z
intestinal lymphatics
zebrafish_anatomy
<new synonym>
ZFA:0005840
intestinal lymphatic network
Lymph vasculature surrounding the intestines.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Lymph vessel that follows the supraintestinal artery.
Ceri
2015-04-30T11:25:27Z
UR-IL
zebrafish_anatomy
ZFA:0005841
upper right intestinal lymph vessel
Lymph vessel that follows the supraintestinal artery.
GOC:CVS
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
UR-IL
ZFIN:ZDB-PUB-120529-43
Pair of lymph vessel that follows the right subintestinal vein. At 6 dpf, the LR-IL appears to bifurcate and form two separate vessels that both run in close proximity to one another along the right sub intestinal vein. These vessels are difficult to distinguish from each other at 6dp.
Ceri
2015-04-30T11:28:11Z
LR-IL
zebrafish_anatomy
ZFA:0005842
lower right intestinal lymph vessel
Pair of lymph vessel that follows the right subintestinal vein. At 6 dpf, the LR-IL appears to bifurcate and form two separate vessels that both run in close proximity to one another along the right sub intestinal vein. These vessels are difficult to distinguish from each other at 6dp.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Lymph vessels that are on the right side of the intestine.
Ceri
2015-04-30T11:31:28Z
zebrafish_anatomy
ZFA:0005843
right intestinal lymphatics
Lymph vessels that are on the right side of the intestine.
GOC:cvs
ORCID:0000-0002-2244-7917
Any of the tubular multi-tissue structures through which lymph moves in the body. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal.
Ceri
2015-04-30T11:44:00Z
zebrafish_anatomy
ZFA:0005844
lymph vessel
Any of the tubular multi-tissue structures through which lymph moves in the body. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal.
GOC:cvs
ORCID:0000-0002-2244-7917
Lymph vessel that extends along the left subintestinal vein.
Ceri
2015-04-30T11:49:08Z
LL-IL
lower left intestinal lymphatic
zebrafish_anatomy
ZFA:0005845
lower left intestinal lymph vessel
Lymph vessel that extends along the left subintestinal vein.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Lymph vessels that are on the left side of the intestine. These do not run as far posteriorly as the right intestinal lymphatics.
Ceri
2015-04-30T11:52:58Z
zebrafish_anatomy
ZFA:0005846
left intestinal lymphatics
Lymph vessels that are on the left side of the intestine. These do not run as far posteriorly as the right intestinal lymphatics.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Lymph vessel on the left of the intestine that runs parallel to the upper right intestinal lymph vessel. There does not appear to be an associated blood vessel.
Ceri
2015-04-30T12:28:46Z
UL-IL
zebrafish_anatomy
ZFA:0005847
upper left intestinal lymph vessel
Lymph vessel on the left of the intestine that runs parallel to the upper right intestinal lymph vessel. There does not appear to be an associated blood vessel.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-120529-43
Lymph vessel that connects lymph vessels within the intestinal lymphatic network.
Ceri
2015-04-30T01:40:05Z
zebrafish_anatomy
ZFA:0005848
intestinal interlymphatic vessel
Lymph vessel that connects lymph vessels within the intestinal lymphatic network.
GOC:cvs
ORCID:0000-0002-2244-7917
Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These structures successively replace the primary ceratobranchial teeth.
2015-06-19T12:48:15Z
zebrafish_anatomy
ZFA:0005849
ceratobranchial 5 replacement tooth
Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These structures successively replace the primary ceratobranchial teeth.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-001208-4
A cluster of neurons first visible in the embryonic diencephalon located in the dorsolateral brain just posterior to the posterior commissure, that project growth cones ventrally along the posterior commissure to the anterior tegmentum where the PC intersects two longitudinal tracts, the tract of the postoptic commissure (TPOC) and the medial longitudinal fasciculus (MLF). Once at the intersection, nuc PC growth cones turn posteriorly onto the TPOC in the dorsal tegmentum and follow it to the hindbrain.
Ceri
2015-06-19T03:27:22Z
nuc PC
nucleus of posterior commissure
zebrafish_anatomy
nTPC
nucleus of the tract of the posterior commissure
ZFA:0005850
nucleus of the caudal commissure
A cluster of neurons first visible in the embryonic diencephalon located in the dorsolateral brain just posterior to the posterior commissure, that project growth cones ventrally along the posterior commissure to the anterior tegmentum where the PC intersects two longitudinal tracts, the tract of the postoptic commissure (TPOC) and the medial longitudinal fasciculus (MLF). Once at the intersection, nuc PC growth cones turn posteriorly onto the TPOC in the dorsal tegmentum and follow it to the hindbrain.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-167
ZFIN:ZDB-PUB-961014-170
Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These are the first teeth to develop.
Ceri
2015-07-01T04:53:58Z
zebrafish_anatomy
ZFA:0005851
ceratobranchial 5 primary tooth
Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These are the first teeth to develop.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-020820-10
Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 4V.
Ceri
2015-07-01T04:55:16Z
zebrafish_anatomy
ZFA:0005852
replacement tooth 4V
Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 4V.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 5V.
Ceri
2015-07-02T09:04:21Z
zebrafish_anatomy
ZFA:0005853
replacement tooth 5V
Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 5V.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 3V.
Ceri
2015-07-02T09:05:23Z
zebrafish_anatomy
ZFA:0005854
replacement tooth 3V
Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 3V.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 2V.
Ceri
2015-07-02T09:18:29Z
zebrafish_anatomy
ZFA:0005855
replacement tooth 2V
Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 2V.
GOC:cvs
ORCiD:0000-0002-2244-7917
Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 1V.
Ceri
2015-07-02T09:19:35Z
zebrafish_anatomy
ZFA:0005856
replacement tooth 1V
Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 1V.
GOC:cvs
ORCiD:0000-0002-2244-7917
Zebrafish bile contains the bile alcohol cyprinol sulfate.
Ceri
2015-07-31T11:15:59Z
zebrafish_anatomy
ZFA:0005857
bile
Zebrafish bile contains the bile alcohol cyprinol sulfate.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120822-8
Capillaries that branch from the hyaloid artery and drain into the hyaloid vein. The hyaloid capillaries are located behind the lens and may be transient.
Ceri
2015-08-17T04:43:51Z
zebrafish_anatomy
ZFA:0005858
hyaloid capillaries
Capillaries that branch from the hyaloid artery and drain into the hyaloid vein. The hyaloid capillaries are located behind the lens and may be transient.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-150419-5
Joint that articulates the interhyal skeletal element and ceratohyal skeletal element. The ceratohyal-interhyal joint is paired.
Ceri
2015-09-09T01:15:07Z
zebrafish_anatomy
ZFA:0005859
ceratohyal-interhyal joint
Joint that articulates the interhyal skeletal element and ceratohyal skeletal element. The ceratohyal-interhyal joint is paired.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-970210-30
Joint that articulates the interhyal element and the hyosymplectic element. The interhyal-hyosymplectic joint is paired.
Ceri
2015-09-09T01:28:54Z
zebrafish_anatomy
ZFA:0005860
interhyal-hyosymplectic joint
Joint that articulates the interhyal element and the hyosymplectic element. The interhyal-hyosymplectic joint is paired.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-970210-30
Joint that articulates the opercle and they hyosymplectic. The opercle-hyosymplectic joint is paired.
Ceri
2015-09-09T01:33:46Z
zebrafish_anatomy
ZFA:0005861
opercle-hyosymplectic joint
Joint that articulates the opercle and they hyosymplectic. The opercle-hyosymplectic joint is paired.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-970210-30
Lymph vessels within the ovary. These vessels are located in the interstitium between ovarian follicles and appear to envelop arterioles.
Ceri
2015-10-28T12:00:39Z
zebrafish_anatomy
ZFA:0005862
ovarian lymph vessel
Lymph vessels within the ovary. These vessels are located in the interstitium between ovarian follicles and appear to envelop arterioles.
GOC:CVS
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-130218-10
Pectoral fin muscle. Links pectoral fin and branchial movement and stabilizes the pectoral girdle. Thought to be the teleost homologue of the cucullaris muscle group.
Ceri
2015-10-28T04:41:12Z
protractor pectoralis
zebrafish_anatomy
ZFA:0005863
pectoral protractor
Pectoral fin muscle. Links pectoral fin and branchial movement and stabilizes the pectoral girdle. Thought to be the teleost homologue of the cucullaris muscle group.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-110803-26
protractor pectoralis
ZFIN:ZDB-PUB-110803-26
Portion of optic tract that innervates the optic tectum.
Ceri
2016-01-11T03:48:45Z
zebrafish_anatomy
ZFA:0005864
retinotectal tract
Portion of optic tract that innervates the optic tectum.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1095
ZFIN:ZDB-PUB-961014-148
Neuron with the large soma in the brain with an axon projecting caudally to the spinal cord.
Ceri
2016-01-12T10:33:08Z
zebrafish_anatomy
ZFA:0005865
reticulospinal neuron
Neuron with the large soma in the brain with an axon projecting caudally to the spinal cord.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-594
CNS interneuron with a soma located in a cluster in the lateral wall of the medulla, with dendrites confined to the neuropil, that has connections to the vestibular and lateral line neurons.
Ceri
2016-01-12T11:25:07Z
zebrafish_anatomy
V
ZFA:0005866
vestibulospinal neuron
CNS interneuron with a soma located in a cluster in the lateral wall of the medulla, with dendrites confined to the neuropil, that has connections to the vestibular and lateral line neurons.
ZFIN:ZDB-PUB-961014-572
Mesoderm part of the head.
Ceri
2016-01-14T02:01:33Z
zebrafish_anatomy
ZFA:0005867
cephalic mesoderm
Mesoderm part of the head.
GOC:cvs
ORCiD:0000-0002-2244-7917,
Rostral cell mass bordering the pretectum. The cells are stained with the gene nurod and are Hu positive. The region is named for its presumed homology to the avian griseum tectale.
Ceri
2016-01-22T12:54:41Z
tectal grey
zebrafish_anatomy
ZFA:0005868
griseum tectale
Rostral cell mass bordering the pretectum. The cells are stained with the gene nurod and are Hu positive. The region is named for its presumed homology to the avian griseum tectale.
ZFIN:ZDB-PUB-070711-1
Multi-tissue structure that is made up of the external granular layer and the ventral proliferative layer.
Ceri
2016-02-02T11:33:30Z
zebrafish_anatomy
ZFA:0005869
cerebellar plate
Multi-tissue structure that is made up of the external granular layer and the ventral proliferative layer.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070711-1
Proliferative zone on the ventral side of the cerebellar plate.
Ceri
2016-02-02T11:45:44Z
zebrafish_anatomy
ZFA:0005870
cerebellar plate ventral proliferative layer
Proliferative zone on the ventral side of the cerebellar plate.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070711-1
Portion of tissue in the midbrain that will develop into the nucleus of the medial longitudinal fasciculus synencephalon.
Ceri
2016-02-02T11:47:50Z
zebrafish_anatomy
ZFA:0005871
region of the nucleus of the medial longitudinal fascicle
Portion of tissue in the midbrain that will develop into the nucleus of the medial longitudinal fasciculus synencephalon.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070711-1
Proliferative region that forms on peripheral side of the cerebellar plate.
Ceri
2016-02-02T11:50:39Z
EGL
zebrafish_anatomical_ontology
cerebellar plate peripheral proliferative zone
ZFA:0005872
external granular layer of the cerebellar plate
Proliferative region that forms on peripheral side of the cerebellar plate.
GOC:cvs
ORCiD:0000-0002-2244-7917
ORDCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-070711-1
A neuron that releases norephinephrine (noradrenaline) as a neurotransmitter.
Ceri
2016-03-22T02:18:57Z
CL:0008025
zebrafish_anatomy
ZFA:0005873
noradrenergic neuron
A neuron that releases norephinephrine (noradrenaline) as a neurotransmitter.
CL:Curator
Spiral neurons are excitatory interneurons located in rhombomere 3 and have contralateral projections that cross the midline forming commissures in rhombomere 3. After crossing the midline the two commissures fuse and project caudally synapsing with the Mauthner neuron. As they enter the axon cap, spiral fiber neurons lose their myelin and wrap around the axon hillock in a stereotyped spiral, where they make both electrical and glutamatergic synapses on the M cell axon close to the M-cell soma and with one another. Spiral neurons produced biphasic excitatory postsynaptic potentials (EPSPs) in the contralateral M-cell with a short latency.
Ceri
2016-03-23T01:14:15Z
zebrafish_anatomy
ZFA:0005874
spiral neuron
Spiral neurons are excitatory interneurons located in rhombomere 3 and have contralateral projections that cross the midline forming commissures in rhombomere 3. After crossing the midline the two commissures fuse and project caudally synapsing with the Mauthner neuron. As they enter the axon cap, spiral fiber neurons lose their myelin and wrap around the axon hillock in a stereotyped spiral, where they make both electrical and glutamatergic synapses on the M cell axon close to the M-cell soma and with one another. Spiral neurons produced biphasic excitatory postsynaptic potentials (EPSPs) in the contralateral M-cell with a short latency.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-010711-2
ZFIN:ZDB-PUB-110110-13
ZFIN:ZDB-PUB-150512-4
Tract that extends from the intersection of the tract of the postoptic commissure and supraoptic tract that projects caudally across the hypothalamus and into the commissure of the caudal tuberculum. The axons appear to originate from a symmetric group of neurons in the forebrain that travel caudally into the diencephalon and then decussate, with some axons continuing to travel longitudinally and join other axons crossing the midline. There does not appear to be a clear ortholog of the TCPT in mammals; and the function(s) of the TCPT are not currently known.
Ceri
2016-06-07T10:08:17Z
TCPT
tract of the commissure of the posterior tuberculum
zebrafish_anatomy
ZFA:0005875
This tract was originally identified in zebrafish by Wilson et al., 1990.
tract of the commissure of the caudal tuberculum
Tract that extends from the intersection of the tract of the postoptic commissure and supraoptic tract that projects caudally across the hypothalamus and into the commissure of the caudal tuberculum. The axons appear to originate from a symmetric group of neurons in the forebrain that travel caudally into the diencephalon and then decussate, with some axons continuing to travel longitudinally and join other axons crossing the midline. There does not appear to be a clear ortholog of the TCPT in mammals; and the function(s) of the TCPT are not currently known.
GOC:cvs
GOC:dsf
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-1268
TCPT
ZFIN:ZDB-PUB-961014-1268
The space between the cornea and lens in the anterior segment of the eye where the aqueous humor is located.
Ceri
2016-10-13T15:42:03Z
zebrafish_anatomy
ZFA:0005876
anterior chamber eye
The space between the cornea and lens in the anterior segment of the eye where the aqueous humor is located.
GOC:cvs
ORCiD:0000-0002-2244-7917
Commissure that is formed by a subset of TCPT axons that cross the midline in the diencephalon. The TCPTc does not appear to cross with other commissures. The initial crossing of the TCPTc occurs at approximately 36 hpf.
Ceri
2016-10-18T10:07:14Z
Commissure of the TCPT
zebrafish_anatomy
ZFA:0005877
commissure of the tract of the commissure of the caudal tuberculum
Commissure that is formed by a subset of TCPT axons that cross the midline in the diencephalon. The TCPTc does not appear to cross with other commissures. The initial crossing of the TCPTc occurs at approximately 36 hpf.
GOC:cvs
GOC:dsf
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120419-3.
An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes. In zebrafish oogonia are round cells, with centrally located nucleoli, which are strongly basophilic. Oogonia in larva zebrafish fish are often found in clusters of two or four cells, corresponding to the second, or third oogonial divisions, presumably arising from mitotic divisions of primordial germ cells.
Ceri
2016-12-14T12:05:24Z
CL:0000024
zebrafish_anatomy
ZFA:0005878
oogonia
An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes. In zebrafish oogonia are round cells, with centrally located nucleoli, which are strongly basophilic. Oogonia in larva zebrafish fish are often found in clusters of two or four cells, corresponding to the second, or third oogonial divisions, presumably arising from mitotic divisions of primordial germ cells.
GOC:cvs
GOC:tfm
ISBN:0721662544
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-120718-30
Tubules formed by the seminiferous epithelium that contains spermatogenic cyst surrounded by somatic support cells, called Sertoli cells. The lumen of he seminiferous tubules connects to the sperm or efferent duct.
Ceri
2017-04-28T11:17:00Z
sperm duct
seminiferous tubules
zebrafish_anatomy
ZFA:0005879
seminiferous tubule
Tubules formed by the seminiferous epithelium that contains spermatogenic cyst surrounded by somatic support cells, called Sertoli cells. The lumen of he seminiferous tubules connects to the sperm or efferent duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090407-9
seminiferous tubules
Epithelium that lines the seminiferous tubules.
Ceri
2017-05-16T12:39:16Z
zebrafish_anatomy
ZFA:0005880
seminiferous epithelium
Epithelium that lines the seminiferous tubules.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090407-9
The membranous sheath that surrounding the seminiferous tubule.
Ceri
2017-05-16T12:44:18Z
zebrafish_anatomy
ZFA:0005881
tunica propria of seminiferous tubule
The membranous sheath that surrounding the seminiferous tubule.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090407-9
Structure in the testis formed by cytoplasmic projections of one or two Sertoli cells that surround a single spermatogonium. Sperm production occurs with in the cyst and the spermatogonium divides to generate approximately 1300 mature sperm. A given Sertoli cell is in contact with only one germ cell clone.
Ceri
2017-05-16T12:48:48Z
zebrafish_anatomy
ZFA:0005882
spermatogenic cyst
Structure in the testis formed by cytoplasmic projections of one or two Sertoli cells that surround a single spermatogonium. Sperm production occurs with in the cyst and the spermatogonium divides to generate approximately 1300 mature sperm. A given Sertoli cell is in contact with only one germ cell clone.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090407-9
Membranous sheath that surrounds the testis.
Ceri
2017-05-16T12:51:24Z
zebrafish_anatomy
ZFA:0005883
tunica albuginea testis
Membranous sheath that surrounds the testis.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090407-9
Lumen of the seminiferous tubule. Mature sperm is stored in the tubular lumen.
Ceri
2017-05-16T13:18:07Z
zebrafish_anatomy
ZFA:0005884
seminiferous tubule lumen
Lumen of the seminiferous tubule. Mature sperm is stored in the tubular lumen.
GOC:cvs
ORCiD:0000-0002-2244-7917
https://en.wikibooks.org/wiki/The_Zebrafish_in_Toxicology/Spermatogenesis
Ligament that connects the anterior apex of the opercle to the posterior end of the ceratohyal. The ligament extends orthogonal and anterior to the opercle.
2017-06-12T13:27:26Z
zebrafish_anatomy
ZFA:0005885
operculohyoid ligament
Ligament that connects the anterior apex of the opercle to the posterior end of the ceratohyal. The ligament extends orthogonal and anterior to the opercle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-161030-16
Cartilage that attaches the parachordal cartilage to the auditory capsule anterior to the basicapsular fenestra. The anterior basicapsular commissure are paired.
Ceri
2017-10-20T11:38:57Z
anterior basicranial commissure
zebrafish_anatomy
ZFA:0005886
anterior basicapsular commissure
Cartilage that attaches the parachordal cartilage to the auditory capsule anterior to the basicapsular fenestra. The anterior basicapsular commissure are paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
anterior basicranial commissure
ZFIN:ZDB-PUB-970819-13
Cartilage that attaches the parachordal cartilage to the auditory capsule posterior of the basicapsular fenestra. The posterior basicapsular commissure are paired.
Ceri
2017-10-20T11:42:11Z
posterior basicranial commissure
zebrafish_anatomy
ZFA:0005887
posterior basicapsular commissure
Cartilage that attaches the parachordal cartilage to the auditory capsule posterior of the basicapsular fenestra. The posterior basicapsular commissure are paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
posterior basicranial commissure
ZFIN:ZDB-PUB-970819-13
Cartilage that grows from the auditory capsule medially toward the anterior end of the parachordal cartilage to enclose the hyomandibular (facial) foramen. The lateral basicapsular commissure are paired.
Ceri
2017-10-20T11:51:14Z
lateral basicranial commissure
zebrafish_anatomy
lateral commissure
ZFA:0005888
lateral basicapsular commissure
Cartilage that grows from the auditory capsule medially toward the anterior end of the parachordal cartilage to enclose the hyomandibular (facial) foramen. The lateral basicapsular commissure are paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-970819-13
lateral basicranial commissure
ZFIN:ZDB-PUB-970819-13
lateral commissure
ZFIN:ZDB-PUB-970819-13
Syndesmosis that connects the posterior lateral edge of the epiotic to the posttemporal. The epiotic-posttemporal joint is paired.
Ceri
2017-10-20T15:00:45Z
epioccipital-posttemporal joint
zebrafish_anatomy
ZFA:0005889
epiotic-posttemporal joint
Syndesmosis that connects the posterior lateral edge of the epiotic to the posttemporal. The epiotic-posttemporal joint is paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Canal where the carotid artery enters the cranium. Located between the parasphenoid and prootic bones in adult fish.
Ceri
2017-10-25T14:53:32Z
zebrafish_anatomy
ZFA:0005890
carotid artery canal
Canal where the carotid artery enters the cranium. Located between the parasphenoid and prootic bones in adult fish.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Syndesmosis that connects the anterior edge epiotic to the parietal. The epiotic-parietal joint is paired.
Ceri
2017-10-20T15:30:23Z
epioccipital-parietal
zebrafish_anatomy
ZFA:0005891
epiotic-parietal joint
Syndesmosis that connects the anterior edge epiotic to the parietal. The epiotic-parietal joint is paired.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development.
Ceri
2017-10-20T16:00:30Z
lateral occipital foramina
zebrafish_anatomy
ZFA:0005892
lateral occipital foramen
Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
lateral occipital foramina
ZFIN:ZDB-PUB-961014-192
Foramen in the exoccipital through which the glossopharyngeal nerve (cranial nerve IX) passes.
Ceri
2017-10-20T16:05:15Z
zebrafish_anatomy
ZFA:0005893
glossopharyngeal foramen
Foramen in the exoccipital through which the glossopharyngeal nerve (cranial nerve IX) passes.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Foramen in the exoccipital through which the vagus nerve (cranial nerve X) passes.
Ceri
2017-10-20T16:06:35Z
zebrafish_anatomy
ZFA:0005894
vagus foramen
Foramen in the exoccipital through which the vagus nerve (cranial nerve X) passes.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Chamber in the prootic where the trunks of the trigeminal facial nerve complex pass from the brain to the outside of the cranium. In the adult, a posteromedial extension from the prootic delimits the medial boundary of the trigeminal-facial chamber. The anterior opening of the trigeminal-facial chamber lies between the prootic and the pterosphenoid.
Ceri
2017-10-27T16:53:59Z
trigeminofacialis chamber
zebrafish_anatomy
ZFA:0005895
trigeminal-facial chamber
Chamber in the prootic where the trunks of the trigeminal facial nerve complex pass from the brain to the outside of the cranium. In the adult, a posteromedial extension from the prootic delimits the medial boundary of the trigeminal-facial chamber. The anterior opening of the trigeminal-facial chamber lies between the prootic and the pterosphenoid.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-192
Longitudinal unpaired muscle that attaches to the base of the most posterior ray of the anal fin (usually ray 14) and runs posteriorly into he hypaxial musculature of the caudal fin. The anal retractor pulls the anal fin toward the body.
ceriv
2018-02-12T10:14:25Z
infracarinalis posterior
retractor analis
zebrafish_anatomy
ZFA:0005896
anal retractor
Longitudinal unpaired muscle that attaches to the base of the most posterior ray of the anal fin (usually ray 14) and runs posteriorly into he hypaxial musculature of the caudal fin. The anal retractor pulls the anal fin toward the body.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
infracarinalis posterior
ZFIN:ZDB-PUB-151106-17
ZFIN:ZDB-PUB-180212-2
retractor analis
ZFIN:ZDB-PUB-171118-8
Longitudinal muscle that on the anterior end is continuous with the retractor ischii and on the posterior end inserts into the base of the first anal ray.
ceriv
2018-02-12T10:37:38Z
protractor analis
zebrafish_anatomy
infracarinalis medius
ZFA:0005897
anal protractor
Longitudinal muscle that on the anterior end is continuous with the retractor ischii and on the posterior end inserts into the base of the first anal ray.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-171118-8
protractor analis
ZFIN:ZDB-PUB-171118-8
infracarinalis medius
ZFIN:ZDB-PUB-151106-17
ZFIN:ZDB-PUB-180212-2
Tissue that lies between the caudal artery and the caudal vein plexus where definitive hematopoiesis occurs after 48hpf and before the hematopoietic progenitors migrate to the thymus and kidney.
Ceri
2018-02-21T12:40:50Z
zebrafish_anatomy
posterior blood island
ZFA:0005898
caudal hematopoietic tissue
Tissue that lies between the caudal artery and the caudal vein plexus where definitive hematopoiesis occurs after 48hpf and before the hematopoietic progenitors migrate to the thymus and kidney.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-061227-29
ZFIN:ZDB-PUB-070303-37
posterior blood island
ZFIN:ZDB-PUB-070303-37
The initial growth point of the scale. In zebrafish the focus is on the anterior edge of the scale.
Ceri
2018-08-30T16:47:45Z
zebrafish_anatomy
ZFA:0005899
scale focus
The initial growth point of the scale. In zebrafish the focus is on the anterior edge of the scale.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180311-2
Grooves on the scale radiating from the focus. Zebrafish have primary radii that start at the focus and extend to the posterior margin of the scale.
Ceri
2018-08-30T16:50:48Z
scale radii
zebrafish_anatomy
ZFA:0005900
scale radius
Grooves on the scale radiating from the focus. Zebrafish have primary radii that start at the focus and extend to the posterior margin of the scale.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180311-2
scale radii
Transient groove in the dorsal eye lined by basal lamina. The groove extends across the dorsal retina to partially separate the nasal and temporal retinal lobes. The sulcus forms soon after optic cup formation and as the eye develops it becomes broader and shallower until it is undetectable.
Ceri
2018-09-05T16:23:34Z
dorsal ocular sulcus
zebrafish_anatomy
ZFA:0005901
superior ocular sulcus
Transient groove in the dorsal eye lined by basal lamina. The groove extends across the dorsal retina to partially separate the nasal and temporal retinal lobes. The sulcus forms soon after optic cup formation and as the eye develops it becomes broader and shallower until it is undetectable.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180310-10
A medial cartilaginous spur that develops from the dorsomedial edge of the palatoquadrate. It is derived from cells located in the maxillary prominence of the first pharyngeal arch and gives rise to the metapterygoid.
Ceri
2018-09-12T09:53:49Z
zebrafish_anatomy
Ptp
ZFA:0005902
pterygoid process
A medial cartilaginous spur that develops from the dorsomedial edge of the palatoquadrate. It is derived from cells located in the maxillary prominence of the first pharyngeal arch and gives rise to the metapterygoid.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-100726-23
ZFIN:ZDB-PUB-961014-192
Skeletal tissue that is an extension of a skeletal element composed of cartilage.
Ceri
2018-09-12T10:11:35Z
zebrafish_anatomy
ZFA:0005903
cartilaginous projection
Skeletal tissue that is an extension of a skeletal element composed of cartilage.
GOC:cvs
ORCiD:0000-0002-2244-7917
A protrusion of cartilage at the posteroventral tip of Meckel's cartilage that gives rise to the retroarticular.
Ceri
2018-09-12T10:37:59Z
zebrafish_anatomy
ZFA:0005904
retroarticular process
A protrusion of cartilage at the posteroventral tip of Meckel's cartilage that gives rise to the retroarticular.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-161203-3
Cartilaginous protrusion on the posterodorsal region of Meckel's cartilage. The coronoid process of Meckel's cartilage forms the dorsal portion of the articulation with the anteroventral corner of the palatoquadrate.
Ceri
2018-09-12T14:26:48Z
coronoid process of Meckel's cartilage
zebrafish_anatomy
ZFA:0005905
coronoid process
Cartilaginous protrusion on the posterodorsal region of Meckel's cartilage. The coronoid process of Meckel's cartilage forms the dorsal portion of the articulation with the anteroventral corner of the palatoquadrate.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060724-1
ZFIN:ZDB-PUB-161203-3
Thread-like fibrous aggregation of secreted molecules extending from the subcommissural organ (SCO) through the ventricular system and central canal to the end of the spinal cord.
ceriv
2018-11-29T11:06:47Z
zebrafish_anatomy
ZFA:0005906
Reissner's fiber
Thread-like fibrous aggregation of secreted molecules extending from the subcommissural organ (SCO) through the ventricular system and central canal to the end of the spinal cord.
GOC:cvs
ISBN:978-0471888895
ZFIN:ZDB-PUB-980205-16
Neuronal tissue that is the arborization field for the majority of the ganglion cell axons, it also holds other incoming axons, for example, from the pretectum and the contralateral tectum, as well as the dendrites and axons of tectal interneurons and projection neurons.
Ceri
2019-01-28T17:08:19Z
zebrafish_anatomy
synaptic neuropil
tectial lamina
ZFA:0005907
tectal neuropile
Neuronal tissue that is the arborization field for the majority of the ganglion cell axons, it also holds other incoming axons, for example, from the pretectum and the contralateral tectum, as well as the dendrites and axons of tectal interneurons and projection neurons.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-081218-37
synaptic neuropil
ZFIN:ZDB-PUB-101101-16
tectial lamina
ZFIN:ZDB-PUB-081218-37
Region the larval brain that is a forerunner of the adult central and superficial pretectal regions. This region is non ventricular neural proliferation zone.
Ceri
2019-01-29T16:22:51Z
M1
zebrafish_anatomy
ZFA:0005908
presumptive pretectum proliferative zone
Region the larval brain that is a forerunner of the adult central and superficial pretectal regions. This region is non ventricular neural proliferation zone.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-030115-8
ZFIN:ZDB-PUB-990406-3
M1
ZFIN:ZDB-PUB-070711-1
Region that gives rise to various caudal tubercular structures in the preglomerular region This region is non ventricular neural proliferation zone and doesn't express GABA.
Ceri
2019-01-29T16:37:24Z
zebrafish_anatomy
M2
early migrated posterior tubercular region
preglomerular anlagen
ZFA:0005909
presumptive preglomerular region
Region that gives rise to various caudal tubercular structures in the preglomerular region This region is non ventricular neural proliferation zone and doesn't express GABA.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-020912-2
ZFIN:ZDB-PUB-030115-8
M2
ZFIN:ZDB-PUB-070711-1
early migrated posterior tubercular region
ZFIN:ZDB-PUB-070711-1
preglomerular anlagen
ZFIN:ZDB-PUB-020912-2
Portion of tissue that is presumed to give rise to the entopenduncular nucleus.
Ceri
2019-01-30T13:02:59Z
M3
zebrafish_anatomy
ZFA:0005910
presumptive ventral entopeduncular nucleus
Portion of tissue that is presumed to give rise to the entopenduncular nucleus.
ZFIN:ZDB-PUB-040304-8
ZFIN:ZDB-PUB-090914-27
Portion of tissue that gives rise to the lateral nucleus of the ventral telencephalon. The area sometimes called M4 does not express GABA or dlx2a.
Ceri
2019-01-30T13:42:52Z
zebrafish_anatomy
M4
lateral nucleus of area ventralis telencepha
ZFA:0005911
presumptive lateral nucleus of ventral telencephalon
Portion of tissue that gives rise to the lateral nucleus of the ventral telencephalon. The area sometimes called M4 does not express GABA or dlx2a.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-090814-14
ZFIN:ZDB-PUB-090914-27
M4
ZFIN:ZDB-PUB-090814-14
lateral nucleus of area ventralis telencepha
ZFIN:ZDB-PUB-090814-14
Pouch at the end of the endolymphatic duct that helps regulates pressure on the inner ear. The endolymphatic sac is separated from the endolymphatic duct by a dynamic lamellar barrier. The lamellar barrier is composed of long, thin lamellar sheets that form tongue-and-groove structure or interwoven broadly overlapping structures. In adults, the endolymphatic duct and sac are partially encased within the temporal bone such that the distal end of the endolymphatic sac protrudes out of the temporal bone into the cranial cavity .
2019-04-16T14:25:54Z
TAO:0002194
zebrafish_anatomy
ZFA:0005912
endolymphatic sac
Pouch at the end of the endolymphatic duct that helps regulates pressure on the inner ear. The endolymphatic sac is separated from the endolymphatic duct by a dynamic lamellar barrier. The lamellar barrier is composed of long, thin lamellar sheets that form tongue-and-groove structure or interwoven broadly overlapping structures. In adults, the endolymphatic duct and sac are partially encased within the temporal bone such that the distal end of the endolymphatic sac protrudes out of the temporal bone into the cranial cavity .
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180622-24
Organism substance that is the output of the nephron.
2019-05-02T16:21:42Z
zebrafish_anatomy
ZFA:0005913
urine
Organism substance that is the output of the nephron.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-050818-17
Iridophore layer of iris composed of a outer layer of regularly tiled iridophores and an inner layer of randomly arranged iridophores. The outer regularly tiled iridophores reflect blue green light. The light reflecting crystals in the iris iridophores are composed of anhydrous Beta-guanine.
Ceri
2019-05-29T15:43:36Z
argenta
iridophore layer iris
zebrafish_anatomy
ZFA:0005914
argentum
Iridophore layer of iris composed of a outer layer of regularly tiled iridophores and an inner layer of randomly arranged iridophores. The outer regularly tiled iridophores reflect blue green light. The light reflecting crystals in the iris iridophores are composed of anhydrous Beta-guanine.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180822-3
argenta
Layer of melanophores that are positioned behind the argenta. The melanophore layer absorbs unfocused light preventing it from reaching the retina.
Ceri
2019-05-29T15:55:27Z
zebrafish_anatomy
ZFA:0005915
iris melanophore layer
Layer of melanophores that are positioned behind the argenta. The melanophore layer absorbs unfocused light preventing it from reaching the retina.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180822-3
Iridophore layer that forms along the dorsal region of the poster segment of the eye. The tapetum is formed by a single layer of Iridophores and is proximal to the photoreceptors and is located in the choroid. The tapetum reflects photons back to the photoreceptors if they were not initially absorbed by the photoreceptors.
Ceri
2019-05-29T16:15:09Z
zebrafish_anatomy
tapetum cellulosum
ZFA:0005916
tapetum lucidum
Iridophore layer that forms along the dorsal region of the poster segment of the eye. The tapetum is formed by a single layer of Iridophores and is proximal to the photoreceptors and is located in the choroid. The tapetum reflects photons back to the photoreceptors if they were not initially absorbed by the photoreceptors.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-180822-3
Neuromast where the paired hair cells are polarized along the anterior-posterior body axis.
ceriv
2020-06-18T10:40:23Z
zebrafish_anatomy
anteroposterior oriented neuromast
ZFA:0005917
anterior-posterior polarized neuromast
Neuromast where the paired hair cells are polarized along the anterior-posterior body axis.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-061205-16
Neuromast where the paired hair cells are polarized along the dorsal-ventral body axis.
ceriv
2020-06-18T10:44:49Z
zebrafish_anatomy
dorsoventral oriented neuromast
ZFA:0005918
dorsal-ventral polarized neuromast
Neuromast where the paired hair cells are polarized along the dorsal-ventral body axis.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-061205-16
Posterior lateral line neuromast where the paired hair cells are polarized along the dorsal-ventral body axis. Develops from the secondary lateral line primordium.
ceriv
2020-06-18T10:46:54Z
perpendicular posterior lateral line neuromast
zebrafish_anatomy
ZFA:0005919
dorsal-ventral polarized posterior lateral line neuromast
Posterior lateral line neuromast where the paired hair cells are polarized along the dorsal-ventral body axis. Develops from the secondary lateral line primordium.
GOC:CVS
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040916-1
perpendicular posterior lateral line neuromast
ZFIN:ZDB-PUB-040916-1
Posterior lateral line neuromast where the paired hair cells are polarized along the anterior-posterior body axis. Deposited by the primary lateral line primordium.
ceriv
2020-06-18T10:53:53Z
zebrafish_anatomy
parallel posterior lateral line neuromast
ZFA:0005920
anterior-posterior polarized posterior lateral line neuromast
Posterior lateral line neuromast where the paired hair cells are polarized along the anterior-posterior body axis. Deposited by the primary lateral line primordium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040916-1
parallel posterior lateral line neuromast
ZFIN:ZDB-PUB-040916-1
Muscle precursor cells that delaminate from the dermomyotome after epithelial-to-mesenchymal transition (EMT) and undergo long-range migration while retaining proliferative capacity.
2020-07-01T10:51:34Z
migratory mesenchymal precursor
zebrafish_anatomy
MMP
ZFA:0005921
migratory muscle precursor
Muscle precursor cells that delaminate from the dermomyotome after epithelial-to-mesenchymal transition (EMT) and undergo long-range migration while retaining proliferative capacity.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-001205-1
ZFIN:ZDB-PUB-200701-39
migratory mesenchymal precursor
ZFIN:ZDB-PUB-001205-1
Groups of migratory muscle precursor that migrate from a conserved origination in concerted manner along stereotyped path.
ceriv
2020-07-01T11:06:26Z
zebrafish_anatomy
ZFA:0005922
migratory muscle precursor stream
Groups of migratory muscle precursor that migrate from a conserved origination in concerted manner along stereotyped path.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040908-9
Muscle precursor stream that originates from the ventral regions of somites 1-3 and migrates anterior of the pectoral fin bud. Migratory muscle precursor from this stream form the esophageal striated muscle and sternohyoid.
ceriv
2020-07-01T11:10:27Z
zebrafish_anatomy
first migratory stream
ZFA:0005923
anterior migratory muscle precursor stream
Muscle precursor stream that originates from the ventral regions of somites 1-3 and migrates anterior of the pectoral fin bud. Migratory muscle precursor from this stream form the esophageal striated muscle and sternohyoid.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040908-9
ZFIN:ZDB-PUB-130709-61
Muscle precursor stream that originates from the ventral regions of somites 2-4 and migrates toward the pectoral fin bud. Migratory muscle precursors from this stream contribute to the pectoral fin musculature and make a small contribution to the posterior hypaxial muscle.
ceriv
2020-07-01T11:14:03Z
zebrafish_anatomy
middle migratory muscle precursor stream
ZFA:0005924
middle migratory muscle precursor stream
Muscle precursor stream that originates from the ventral regions of somites 2-4 and migrates toward the pectoral fin bud. Migratory muscle precursors from this stream contribute to the pectoral fin musculature and make a small contribution to the posterior hypaxial muscle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040908-9
ZFIN:ZDB-PUB-190808-2
Migratory muscle precursor stream that originates from the ventral regions of somites 5-7 that migrates posterior to the pectoral fin bud. Migratory muscle precursors from this stream form the posterior hypaxial muscle.
ceriv
2020-07-01T11:17:29Z
zebrafish_anatomy
third migratory stream
ZFA:0005925
posterior migratory muscle precursor stream
Migratory muscle precursor stream that originates from the ventral regions of somites 5-7 that migrates posterior to the pectoral fin bud. Migratory muscle precursors from this stream form the posterior hypaxial muscle.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040908-9
ZFIN:ZDB-PUB-190427-4
The posterior hypaxial muscle is an early-forming ventral body wall muscle, located immediately posterior to the fin and positioned like a chest muscle. Migratory muscle precursor from somites 4-7 using the middle and posterior stream contribute to the PHM. Stabilizes the sternohyoid during suction feeding. Insertion point is on the cleithrum.
ceriv
2020-07-01T11:21:03Z
inferior obliquus muscle
anterior hypaxial muscle
ventral-most hypaxial muscle
zebrafish_anatomy
PHM
ZFA:0005926
posterior hypaxial muscle
The posterior hypaxial muscle is an early-forming ventral body wall muscle, located immediately posterior to the fin and positioned like a chest muscle. Migratory muscle precursor from somites 4-7 using the middle and posterior stream contribute to the PHM. Stabilizes the sternohyoid during suction feeding. Insertion point is on the cleithrum.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-040908-9
ZFIN:ZDB-PUB-190427-4
ZFIN:ZDB-PUB-200701-39
inferior obliquus muscle
ZFIN:ZDB-PUB-020913-1
anterior hypaxial muscle
ZFIN:ZDB-PUB-050318-5
ventral-most hypaxial muscle
ZFIN:ZDB-PUB-010924-1
Blood vessel endothelium that restricts the passage of circulating substances from the blood to the brain parenchyma while actively facilitating the passage of nutrients and removal of waste products. The developing blood brain barrier undergoes a period of transcytosis and leaks that decrease as the mature form is established. The barrier matures in a posterior to anterior direction.
2020-07-30T10:25:52Z
zebrafish_anatomy
ZFA:0005927
endothelial blood brain barrier
Blood vessel endothelium that restricts the passage of circulating substances from the blood to the brain parenchyma while actively facilitating the passage of nutrients and removal of waste products. The developing blood brain barrier undergoes a period of transcytosis and leaks that decrease as the mature form is established. The barrier matures in a posterior to anterior direction.
GOC:cvs
ORCID:000-0002-2244-7917
ZFIN:ZDB-PUB-190821-6
Lecophores that develop from melanophores. Melanoleucophore are located at the margin of the dorsal fin, in the dorsal and ventral lobes of the caudal fin. Melanoleucophores lack pterdines and carotenoids; exhibited variably shaped organelles distinct from iridophore reflecting platelets and melanosomes and have crystalline Beta-guanine. Melanoleucophores express tyrosinase related protein 1b and purine nucleoside phosphorylase 4a. Immature cells may contain melanin.
2020-11-04T13:46:59Z
zebrafish_anatomy
ZFA:0005928
melanoleucophore
Lecophores that develop from melanophores. Melanoleucophore are located at the margin of the dorsal fin, in the dorsal and ventral lobes of the caudal fin. Melanoleucophores lack pterdines and carotenoids; exhibited variably shaped organelles distinct from iridophore reflecting platelets and melanosomes and have crystalline Beta-guanine. Melanoleucophores express tyrosinase related protein 1b and purine nucleoside phosphorylase 4a. Immature cells may contain melanin.
GOC:cvs
GOC:st
ORCID:0000-0002-2244-7917
ORCID:0000-0002-4142-7153
ZFIN:ZDB-PUB-190530-2
Lecophores that develops from xanthophores. Xantholeucophores are located on the anal fin. Xantholeucophores contain round organelles carotenoid vesicles containing yellow/orange pigment as well as irregular organelles indistinguishable from pterinosomes, which contain yellow or colorless pteridines. During development white pigmentation surrounds a yellow-orange center, gradually increasing until whole cell appears white. Xantholeucophore express aldehyde oxidase 5 and purine nucleoside phosphorylase 4a. These cells most closely resemble the leucophores of other teleost.
ceriv
2020-11-04T14:18:50Z
zebrafish_anatomy
ZFA:0005929
ZDB-PUB-190912-11 mentions that on the 8th day of development Yellow EL xanthophores gradually fade from view, entering a cryptic state. These same progenitors contribute to adult melanophores (black cell) and at least some xanthophores (orange cell). Additionally, some embryonic/EL melanophores persist into the adult stage (brown cell), and EL xanthophores lose their pigment, entering a cryptic phase (light yellow cell), and then reacquire pigment at a late stage of adult pattern development.
xantholeucophore
Lecophores that develops from xanthophores. Xantholeucophores are located on the anal fin. Xantholeucophores contain round organelles carotenoid vesicles containing yellow/orange pigment as well as irregular organelles indistinguishable from pterinosomes, which contain yellow or colorless pteridines. During development white pigmentation surrounds a yellow-orange center, gradually increasing until whole cell appears white. Xantholeucophore express aldehyde oxidase 5 and purine nucleoside phosphorylase 4a. These cells most closely resemble the leucophores of other teleost.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-190530-2
Anatomical space within a tubular organ, duct, or vessel.
2020-11-20T13:39:11Z
zebrafish_anatomy
ZFA:0005930
lumen
Anatomical space within a tubular organ, duct, or vessel.
GOC:cvs
ORCID:0000-0002-2244-7917
https:en.org/wiki/Lumen_(anatomy)
Nonhierarchical network of interconnected vessels. May be the primitive state of a mature vascular structure.
ceriv
2020-11-20T14:12:43Z
zebrafish_anatomy
ZFA:0005931
vascular plexus
Nonhierarchical network of interconnected vessels. May be the primitive state of a mature vascular structure.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-150418-3
Transient plexus formed by vasculogenesis that results in the formation of an intermediate network of similar sized vessels with polygonal-shaped avascular spaces. As the vasculature matures it is remodeled into a hierarchical vascular tree.
ceriv
2020-11-20T14:29:48Z
zebrafish_anatomy
ZFA:0005932
developmental vascular plexus
Transient plexus formed by vasculogenesis that results in the formation of an intermediate network of similar sized vessels with polygonal-shaped avascular spaces. As the vasculature matures it is remodeled into a hierarchical vascular tree.
GOC:cvs
ORCID:0000-0002-2244-7917
PMID:23799579
ZFIN:ZDB-PUB-150418-3
Stable vascular plexus that persist in the adult animal.
ceriv
2020-11-20T14:32:44Z
capillary plexus
mature vascular plexus
zebrafish_anatomy
ZFA:0005933
mature plexus
Stable vascular plexus that persist in the adult animal.
GOC:cvs
ORCID:0000-0002-2244-7917
PMID:23799579
ZFIN:ZDB-PUB-150418-3
Non stereotyped venous plexus derived from specialised angioblast that originate in the floor of the posterior cardinal vein. Emerges from the duct of Cuvier at 2dpf as a reticular structure that spreads bilaterally over the surface of the yolk and gut.
ceriv
2020-11-20T14:35:56Z
subintestinal plexus
zebrafish_anatomy
ZFA:0005934
subintestinal venous plexus
Non stereotyped venous plexus derived from specialised angioblast that originate in the floor of the posterior cardinal vein. Emerges from the duct of Cuvier at 2dpf as a reticular structure that spreads bilaterally over the surface of the yolk and gut.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-150418-3
ZFIN:ZDB-PUB-151021-20
ZFIN:ZDB-PUB-151104-9
Subintestinal venous plexus that wraps the yolk. Anterior vessels connected to both the left and right subintestinal vein drain into the liver. These vessels are reabsorbed after the yolk is depleted.
ceriv
2020-11-20T14:41:40Z
zebrafish_anatomy
yolk plexus
ZFA:0005935
superficial subintestinal venous plexus
Subintestinal venous plexus that wraps the yolk. Anterior vessels connected to both the left and right subintestinal vein drain into the liver. These vessels are reabsorbed after the yolk is depleted.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-150418-3
Plexus that wraps the anterior digestive system. These vessels form the permanent, superficial vessels of the digestive system. The left subintestinal vein regresses and empties into the right subintestinal vein.
ceriv
2020-11-20T14:43:36Z
zebrafish_anatomy
ZFA:0005936
deep subintestinal venous plexus
Plexus that wraps the anterior digestive system. These vessels form the permanent, superficial vessels of the digestive system. The left subintestinal vein regresses and empties into the right subintestinal vein.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-151021-20
Vessels that form connections between the sub intestinal vein and the supraintestinal artery. There are fewer ICVs on the right side of the fish due to the asymmetrical development of the subintestinal veins.
ceriv
2020-11-20T15:14:22Z
zebrafish_anatomy
ICV
ZFA:0005937
interconnecting vessels
Vessels that form connections between the sub intestinal vein and the supraintestinal artery. There are fewer ICVs on the right side of the fish due to the asymmetrical development of the subintestinal veins.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-151104-9
Blood vessel that bridge between organs.
2020-12-02T09:24:58Z
zebrafish_anatomy
ZFA:0005938
inter-organ blood vessel
Blood vessel that bridge between organs.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-130710-65
Blood vessels that bridge between the liver and pancreas. Four of these vessels have been described, called V1 LP-V4LP. The vessels may be transient or permanent and may make direct or indirect connections between the organ vasculature.
ceriv
2020-12-02T09:30:41Z
zebrafish_anatomy
ZFA:0005939
liver pancreas connecting vessel
Blood vessels that bridge between the liver and pancreas. Four of these vessels have been described, called V1 LP-V4LP. The vessels may be transient or permanent and may make direct or indirect connections between the organ vasculature.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-130710-65
Temporary regenerating structure composed of chondrocytes and fibroblast that stabilizes the bone ends at a fracture site. The fibrocartilagionous callus surrounds the bone ends.
2021-01-27T10:34:06Z
zebrafish_anatomy
ZFA:0005940
fibrocartilaginous callus
Temporary regenerating structure composed of chondrocytes and fibroblast that stabilizes the bone ends at a fracture site. The fibrocartilagionous callus surrounds the bone ends.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-190807-16
Temporary regenerating structure wider than the original bone composed of osteoblast and mineralized tissue that replaces the fibrocartilagenous callus at a bone fracture site. The bone callus is eventually remodeled to be the width of the surrounding bone.
ceriv
2021-01-27T10:38:07Z
zebrafish_anatomy
ZFA:0005941
bone callus
Temporary regenerating structure wider than the original bone composed of osteoblast and mineralized tissue that replaces the fibrocartilagenous callus at a bone fracture site. The bone callus is eventually remodeled to be the width of the surrounding bone.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-190807-16
Enterocytes that possess a large supranuclear vacuolar system that preferentially internalize dietary protein via receptor-mediated and fluid-phase endocytosis for intracellular digestion and trans-cellular transport. In zebrafish these cells are located in the posterior region of the mid intestine throughout life. In mammals they are found in the ileum pre-weaning and later are replaced by mature enterocytes .
ceriv
2021-01-27T10:44:40Z
zebrafish_anatomy
ZFA:0005942
lysosome-rich enterocyte
Enterocytes that possess a large supranuclear vacuolar system that preferentially internalize dietary protein via receptor-mediated and fluid-phase endocytosis for intracellular digestion and trans-cellular transport. In zebrafish these cells are located in the posterior region of the mid intestine throughout life. In mammals they are found in the ileum pre-weaning and later are replaced by mature enterocytes .
GOC:cvs
ORCID:0000-0002-1009-339X
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-190903-3
Extraembryonic fluid that fills the space between the embryo and the chorion. Provides mechanical cushion, defense from pathogens and helps maintain osmotic balance.
ceriv
2021-03-25T15:52:05Z
zebrafish_anatomy
ZFA:0005943
perivitelline fluid
Extraembryonic fluid that fills the space between the embryo and the chorion. Provides mechanical cushion, defense from pathogens and helps maintain osmotic balance.
ZFIN:ZDB-PUB-200910-2
Cells that localize on the abluminal side of the vascular endothelium that regulate vessel stability and function. Mural cells are categorized into vascular smooth muscle cells or pericytes.
ceriv
2021-01-27T11:37:04Z
CL:0008034
zebrafish_anatomy
ZFA:0005944
mural cell
Cells that localize on the abluminal side of the vascular endothelium that regulate vessel stability and function. Mural cells are categorized into vascular smooth muscle cells or pericytes.
ORCID:0000-0002-2244-7917
ORCID:0000-0002-4142-7153
ZFIN:ZDB-PUB-190116-4
Retinal cone cell with a long outer segment that form pairs with the short double cone cell as part of the retinal cone mosaic pattern. The long double cone cell is positioned immediately adjacent to the long single cone cell and is sensitive to red light. The double cone cells have membrane projections at the level of the lobed nucleus.
2021-07-09T09:06:25Z
red-sensitive cone cell
zebrafish_anatomy
unequal double cone cell
ZFA:0005945
long double cone cell
Retinal cone cell with a long outer segment that form pairs with the short double cone cell as part of the retinal cone mosaic pattern. The long double cone cell is positioned immediately adjacent to the long single cone cell and is sensitive to red light. The double cone cells have membrane projections at the level of the lobed nucleus.
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-677
ZFIN:ZDB-PUB-990520-1
goc:cvs
red-sensitive cone cell
ZFIN:ZDB-PUB-990520-1
unequal double cone cell
ZFIN:ZDB-PUB-961014-677
Retinal cone cell with a shorter outer segment that form pairs with the long double cone cell as part of the retinal cone mosaic pattern. The short double cone cell is positioned immediately adjacent to the short single cone cell and is sensitive to green light. The double cone cells have membrane projections at the level of the lobed nucleus.
ceriv
2021-07-09T10:53:10Z
green-sensitive cone
zebrafish_anatomy
unequal double cone cell
ZFA:0005946
short double cone cell
Retinal cone cell with a shorter outer segment that form pairs with the long double cone cell as part of the retinal cone mosaic pattern. The short double cone cell is positioned immediately adjacent to the short single cone cell and is sensitive to green light. The double cone cells have membrane projections at the level of the lobed nucleus.
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-677
ZFIN:ZDB-PUB-990520-1
goc:cvs
green-sensitive cone
ZFIN:ZDB-PUB-990520-1
unequal double cone cell
ZFIN:ZDB-PUB-961014-677
Retinal cone cell with a long outer segment. The long single cone cells are sensitive to blue light and are flanked by the long double cone cells.
ceriv
2021-07-09T11:01:04Z
blue-sensitive cone cell
zebrafish_anatomy
ZFA:0005947
long single cone cell
Retinal cone cell with a long outer segment. The long single cone cells are sensitive to blue light and are flanked by the long double cone cells.
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-677
ZFIN:ZDB-PUB-990520-1
goc:cvs
blue-sensitive cone cell
ZFIN:ZDB-PUB-990520-1
Retinal cone cell with the shortest outer segment that is located below the outer segments of the adjacent double cone cells. The short single cone cell is sensitive to UV light and has pronounced endoplasmic reticulum in electron micrographs.
ceriv
2021-07-09T11:10:25Z
UV-sensitive cone
ultraviolet-sensitive cone
zebrafish_anatomy
ZFA:0005948
short single cone cell
Retinal cone cell with the shortest outer segment that is located below the outer segments of the adjacent double cone cells. The short single cone cell is sensitive to UV light and has pronounced endoplasmic reticulum in electron micrographs.
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-677
ZFIN:ZDB-PUB-990520-1
goc:cvs
UV-sensitive cone
ZFIN:ZDB-PUB-990520-1
Lymph vessel located in the heart.
2021-08-13T11:47:35Z
zebrafish_anatomy
ZFA:0005949
heart lymph vessel
Lymph vessel located in the heart.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-191110-11
Lymph vessel located in the bulbus arteriosus (outflow tract). These vessels develop from the facial lymphatic vessels and their appearance correlates with the larval to juvenile transition.
ceriv
2021-08-13T11:53:55Z
outflow tract lymph vessel
zebrafish_anatomy
ZFA:0005950
bulbus arteriosus lymph vessel
Lymph vessel located in the bulbus arteriosus (outflow tract). These vessels develop from the facial lymphatic vessels and their appearance correlates with the larval to juvenile transition.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-191110-11
Lymph vessel located in the cardiac ventricle. The ventricular lymph vessels develop from the bulbus arteriosus lymph vessels and sprout in close proximity to the ventricular blood vessels.
ceriv
2021-08-13T11:58:24Z
zebrafish_anatomy
ZFA:0005951
cardiac ventricle lymph vessel
Lymph vessel located in the cardiac ventricle. The ventricular lymph vessels develop from the bulbus arteriosus lymph vessels and sprout in close proximity to the ventricular blood vessels.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-191110-11
Lymphatic system of the heart.
ceriv
2021-08-13T12:23:44Z
zebrafish_anatomy
ZFA:0005952
heart lymphatic system
Lymphatic system of the heart.
GOC:CVS
ORCID:0000-0002-2244-7917
Capillary plexus that is located in the heart.
ceriv
2021-08-13T12:26:17Z
zebrafish_anatomy
ZFA:0005953
coronary capillary plexus
Capillary plexus that is located in the heart.
GOC:cvs
ORCID:0000-0002-2244-7917
Group of lymphatic cells in the heart that form independently of sprouting lymphangiogenesis. These cells appear as single cells that may expand into isolated lymph vessels as development progresses with no connection to the coronary capillary plexus or the lymphatic network.
ceriv
2021-08-13T12:30:04Z
isolated lymph endothelial cells
zebrafish_anatomy
ZFA:0005954
cardiac lymphatic endothelial cluster
Group of lymphatic cells in the heart that form independently of sprouting lymphangiogenesis. These cells appear as single cells that may expand into isolated lymph vessels as development progresses with no connection to the coronary capillary plexus or the lymphatic network.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-191110-11
Group of lymphatic endothelial cells that is separate from the lymphatic vasculature. These clusters may serve as repositories for lymphatic progenitors in case of tissue damage.
ceriv
2021-08-13T12:53:02Z
zebrafish_anatomy
ZFA:0005955
lymphatic endothelial cluster
Group of lymphatic endothelial cells that is separate from the lymphatic vasculature. These clusters may serve as repositories for lymphatic progenitors in case of tissue damage.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-191110-11
A stem cell that can give rise to cell types of the germ-line.
ceriv
2021-08-13T13:44:39Z
CL:0000014
zebrafish_anatomy
ZFA:0005956
germline stem cell
A stem cell that can give rise to cell types of the germ-line.
ORCID:0000-0002-4142-7153
A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
ceriv
2021-08-13T13:47:16Z
CL:0000034
zebrafish_anatomy
ZFA:0005957
stem cell
A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
GOC:tfm
Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe.
giles
2009-03-26T02:23:30Z
TAO:0006000
Hi
zebrafish_anatomy
ZFA:0006000
intermediate hypothalamus
Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe.
ZFIN:ZDB-PUB-001018-1
ZFIN:ZDB-PUB-020730-6
ZFIN:ZDB-PUB-081114-19
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula saccule senses linear acceleration and gravity. In juveniles the macula saccule is oriented vertically in a plane running along the anterioposterior body axis. It covers the medial wall of the saccule along most of its length.
TAO:0007000
saccular macula
zebrafish_anatomy
ZFA:0007000
macula saccule
Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula saccule senses linear acceleration and gravity. In juveniles the macula saccule is oriented vertically in a plane running along the anterioposterior body axis. It covers the medial wall of the saccule along most of its length.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-010912-7
Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC).
TAO:0007001
dorsal rostral cluster
dorsorostral cluster
drc
zebrafish_anatomy
ZFA:0007001
dorso-rostral cluster
Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC).
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-955
Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC).
TAO:0007002
ventral rostral cluster
ventrorostral cluster
vrc
zebrafish_anatomy
ZFA:0007002
ventro-rostral cluster
Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC).
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-955
Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC).
TAO:0007003
vcc
ventral caudal cluster
ventrocaudal cluster
zebrafish_anatomy
ZFA:0007003
ventro-caudal cluster
Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC).
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-955
Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction.
TAO:0007004
ec
zebrafish_anatomy
ZFA:0007004
epiphyseal cluster
Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-955
Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygapophyses.
ZFA:0001380
TAO:0007005
haemal prezygapophysis
hemal prezygopophysis
zebrafish_anatomy
ZFA:0007005
hemal prezygapophysis
Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygapophyses.
GOC:ymb
ORCiD:0000-0002-9900-7880
Surface structure that is one of the fleshy folds surrounding the opening of the mouth.
TAO:0007006
lips
zebrafish_anatomy
ZFA:0007006
lip
Surface structure that is one of the fleshy folds surrounding the opening of the mouth.
GOC:ymb
ORCiD:0000-0002-9900-7880
http://www.medterms.com/script/main/art.asp?articlekey=9458
lips
true
Is a mandibular muscle that attaches to Meckel's cartilage and functions during jaw closing.
TAO:0007008
intermandibularis anterior
ventral intermandibulari anterior
zebrafish_anatomy
ZFA:0007008
ventral intermandibularis anterior
Is a mandibular muscle that attaches to Meckel's cartilage and functions during jaw closing.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
ZFIN:ZDB-PUB-061010-9
ventral intermandibulari anterior
A portion of tissue which is a fasciculated group of axons. Many time axons in the nerve are enveloped by the glial cells of the peripheral nervous system, the Schwann cells.
TAO:0007009
nerves
zebrafish_anatomy
ZFA:0007009
nerve
A portion of tissue which is a fasciculated group of axons. Many time axons in the nerve are enveloped by the glial cells of the peripheral nervous system, the Schwann cells.
GOC:ymb
ISBN:0878937420
ORCiD:0000-0002-9900-7880
nerves
Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development.
TAO:0007010
eminentia thalami
zebrafish_anatomy
ZFA:0007010
thalamic eminence
Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-070711-1
Part of cranial nerve X.
TAO:0007011
rX
vagus root
zebrafish_anatomy
ZFA:0007011
vagal root
Part of cranial nerve X.
GOC:cvs
ORCiD:0000-0002-2244-7917
In the adult bilaterally paired compact tract located lateral to the medial forebrain bundle that extends to the diencephalon. Formed from several fascicles that originate in the precommissural telencephalon and converge rostrocaudally. In the seven day old fish bilaterally paired bundle that runs caudally from the anterior commissure to the forebrain. In the caudal diencephalon the bundle divides into two parts. The thinner part runs more laterally and ventrally, and the thicker part was located more medially and dorsally. Both bundles run in the caudal direction toward the cranial wall of the lateral recess of the diencephalic ventricle, where they apparently exchange some fibers. Then, they continue in the caudal direction, surrounding the lateral recess from the ventral and dorsal side, and meet close to the caudal wall of lateral recess at the level of the commissure of the posterior tuberculum.
TAO:0007012
fasciculus lateralis telencephali
lateral forebrain bundles
zebrafish_anatomy
ZFA:0007012
lateral forebrain bundle
In the adult bilaterally paired compact tract located lateral to the medial forebrain bundle that extends to the diencephalon. Formed from several fascicles that originate in the precommissural telencephalon and converge rostrocaudally. In the seven day old fish bilaterally paired bundle that runs caudally from the anterior commissure to the forebrain. In the caudal diencephalon the bundle divides into two parts. The thinner part runs more laterally and ventrally, and the thicker part was located more medially and dorsally. Both bundles run in the caudal direction toward the cranial wall of the lateral recess of the diencephalic ventricle, where they apparently exchange some fibers. Then, they continue in the caudal direction, surrounding the lateral recess from the ventral and dorsal side, and meet close to the caudal wall of lateral recess at the level of the commissure of the posterior tuberculum.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-051207-17
ZFIN:ZDB-PUB-961014-1280
fasciculus lateralis telencephali
ZFIN:ZDB-PUB-961014-1280
lateral forebrain bundles
Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes.
TAO:0007013
panplacodal ectoderm
zebrafish_anatomy
ZFA:0007013
preplacodal ectoderm
Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes.
GOC:ymb
ORCiD:0000-0002-9900-7880
panplacodal ectoderm
ZFIN:ZDB-PUB-070122-31
Rostral portion of embryonic tissue that gives rise to the anterior neural plate.
TAO:0007014
zebrafish_anatomy
ZFA:0007014
anterior presumptive neural plate
Rostral portion of embryonic tissue that gives rise to the anterior neural plate.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Caudal portion of embryonic tissue that gives rise to the posterior neural plate.
TAO:0007015
zebrafish_anatomy
ZFA:0007015
posterior presumptive neural plate
Caudal portion of embryonic tissue that gives rise to the posterior neural plate.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Rostral portion of the neural plate. Develops into the anterior neural keel.
TAO:0007016
zebrafish_anatomy
ZFA:0007016
anterior neural plate
Rostral portion of the neural plate. Develops into the anterior neural keel.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Posterior portion of the neural plate that gives rise to the posterior neural keel.
TAO:0007017
zebrafish_anatomy
ZFA:0007017
posterior neural plate
Posterior portion of the neural plate that gives rise to the posterior neural keel.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Anterior portion of anterior neural plate that gives rise to the forebrain neural keel.
TAO:0007018
zebrafish_anatomy
ZFA:0007018
forebrain neural plate
Anterior portion of anterior neural plate that gives rise to the forebrain neural keel.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural plate that gives rise to the midbrain neural keel.
TAO:0007019
zebrafish_anatomy
ZFA:0007019
midbrain neural plate
Portion of neural plate that gives rise to the midbrain neural keel.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of anterior neural plate that gives rise to the forebrain midbrain boundary neural keel.
TAO:0007020
diencephalic-mesencephalic boundary neural plate
zebrafish_anatomy
ZFA:0007020
forebrain midbrain boundary neural plate
Portion of anterior neural plate that gives rise to the forebrain midbrain boundary neural keel.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of the posterior neural plate that gives rise to the spinal cord neural keel.
TAO:0007021
zebrafish_anatomy
ZFA:0007021
spinal cord neural plate
Portion of the posterior neural plate that gives rise to the spinal cord neural keel.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Portion of posterior neural plate that gives rise to the hindbrain neural keel.
TAO:0007022
zebrafish_anatomy
ZFA:0007022
hindbrain neural plate
Portion of posterior neural plate that gives rise to the hindbrain neural keel.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Posterior portion of the neural keel that gives rise to the posterior neural rod.
TAO:0007023
zebrafish_anatomy
ZFA:0007023
posterior neural keel
Posterior portion of the neural keel that gives rise to the posterior neural rod.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Rostral portion of the neural keel. Develops into the anterior neural rod.
TAO:0007024
zebrafish_anatomy
ZFA:0007024
anterior neural keel
Rostral portion of the neural keel. Develops into the anterior neural rod.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural keel that gives rise to the midbrain neural rod.
TAO:0007025
zebrafish_anatomy
ZFA:0007025
midbrain neural keel
Portion of neural keel that gives rise to the midbrain neural rod.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Anterior portion of anterior neural keel that gives rise to the forebrain neural rod.
TAO:0007026
zebrafish_anatomy
ZFA:0007026
forebrain neural keel
Anterior portion of anterior neural keel that gives rise to the forebrain neural rod.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of anterior neural keel that gives rise to the forebrain midbrain boundary neural rod.
TAO:0007027
diencephalic-mesencephalic boundary neural keel
zebrafish_anatomy
ZFA:0007027
forebrain midbrain boundary neural keel
Portion of anterior neural keel that gives rise to the forebrain midbrain boundary neural rod.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of the posterior neural keel that gives rise to the spinal cord neural rod.
TAO:0007028
zebrafish_anatomy
ZFA:0007028
spinal cord neural keel
Portion of the posterior neural keel that gives rise to the spinal cord neural rod.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Portion of posterior neural keel that gives rise to the hindbrain neural rod.
TAO:0007029
zebrafish_anatomy
ZFA:0007029
hindbrain neural keel
Portion of posterior neural keel that gives rise to the hindbrain neural rod.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Posterior portion of the neural rod that gives rise to the posterior neural tube.
TAO:0007030
zebrafish_anatomy
ZFA:0007030
posterior neural rod
Posterior portion of the neural rod that gives rise to the posterior neural tube.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Rostral portion of the neural rod. Develops into the anterior neural tube.
TAO:0007031
zebrafish_anatomy
ZFA:0007031
anterior neural rod
Rostral portion of the neural rod. Develops into the anterior neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural rod that gives rise to the midbrain neural tube.
TAO:0007032
zebrafish_anatomy
ZFA:0007032
midbrain neural rod
Portion of neural rod that gives rise to the midbrain neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of anterior neural rod that gives rise to the forebrain midbrain boundary neural tube.
TAO:0007033
diencephalic-mesencephalic boundary neural rod
zebrafish_anatomy
ZFA:0007033
forebrain midbrain boundary neural rod
Portion of anterior neural rod that gives rise to the forebrain midbrain boundary neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Anterior portion of anterior neural rod that gives rise to the forebrain neural tube.
TAO:0007034
zebrafish_anatomy
ZFA:0007034
forebrain neural rod
Anterior portion of anterior neural rod that gives rise to the forebrain neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of the posterior neural rod that gives rise to the spinal cord neural tube.
TAO:0007035
zebrafish_anatomy
ZFA:0007035
spinal cord neural rod
Portion of the posterior neural rod that gives rise to the spinal cord neural tube.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Portion of posterior neural rod that gives rise to the hindbrain neural tube.
TAO:0007036
zebrafish_anatomy
ZFA:0007036
hindbrain neural rod
Portion of posterior neural rod that gives rise to the hindbrain neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Posterior portion of the neural tube that gives rise to the hindbrain and spinal cord.
TAO:0007037
zebrafish_anatomy
ZFA:0007037
posterior neural tube
Posterior portion of the neural tube that gives rise to the hindbrain and spinal cord.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Rostral portion of the neural tube.
TAO:0007038
zebrafish_anatomy
ZFA:0007038
anterior neural tube
Rostral portion of the neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural tube that gives rise to the midbrain.
TAO:0007039
zebrafish_anatomy
ZFA:0007039
midbrain neural tube
Portion of neural tube that gives rise to the midbrain.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of anterior neural tube that gives rise to the forebrain midbrain boundary.
TAO:0007040
diencephalic-mesencephalic boundary neural tube
zebrafish_anatomy
ZFA:0007040
forebrain midbrain boundary neural tube
Portion of anterior neural tube that gives rise to the forebrain midbrain boundary.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Anterior portion of anterior neural rod that gives rise to the forebrain.
TAO:0007041
zebrafish_anatomy
ZFA:0007041
forebrain neural tube
Anterior portion of anterior neural rod that gives rise to the forebrain.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of the posterior neural tube that gives rise to the spinal cord.
TAO:0007042
zebrafish_anatomy
ZFA:0007042
spinal cord neural tube
Portion of the posterior neural tube that gives rise to the spinal cord.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
Portion of posterior neural tube that gives rise to the hindbrain.
TAO:0007043
zebrafish_anatomy
ZFA:0007043
hindbrain neural tube
Portion of posterior neural tube that gives rise to the hindbrain.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural plate that gives rise to the midbrain hindbrain boundary neural keel.
TAO:0007044
midbrain-hindbrain boundary neural plate
zebrafish_anatomy
ZFA:0007044
midbrain hindbrain boundary neural plate
Portion of neural plate that gives rise to the midbrain hindbrain boundary neural keel.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural keel that gives rise to the midbrain hindbrain boundary neural rod.
TAO:0007045
midbrain-hindbrain boundary neural keel
zebrafish_anatomy
ZFA:0007045
midbrain hindbrain boundary neural keel
Portion of neural keel that gives rise to the midbrain hindbrain boundary neural rod.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural rod that gives rise to the midbrain hindbrain boundary neural tube.
TAO:0007046
midbrain-hindbrain boundary neural rod
zebrafish_anatomy
ZFA:0007046
midbrain hindbrain boundary neural rod
Portion of neural rod that gives rise to the midbrain hindbrain boundary neural tube.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Portion of neural tube that gives rise to the midbrain hindbrain boundary.
TAO:0007047
midbrain-hindbrain boundary neural tube
zebrafish_anatomy
ZFA:0007047
midbrain hindbrain boundary neural tube
Portion of neural tube that gives rise to the midbrain hindbrain boundary.
GOC:mh
GOC:ymb
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-9900-7880
Is a mandibular muscle that attaches Meckel's cartilage to the basihyal cartilage and functions in jaw opening.
TAO:0007048
intermandibularis posterior
ventral intermandibulari posterior
zebrafish_anatomy
ZFA:0007048
ventral intermandibularis posterior
Is a mandibular muscle that attaches Meckel's cartilage to the basihyal cartilage and functions in jaw opening.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
ZFIN:ZDB-PUB-061010-9
ventral intermandibulari posterior
Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing.
TAO:0007049
dorsal adductor mandibulae
zebrafish_anatomy
ZFA:0007049
adductor mandibulae
Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
ZFIN:ZDB-PUB-050318-5
Dorsal subdivision of the putative mandibular muscle plate. Splits into the dilatator operculi and the levator arcus palatini.
TAO:0007050
constrictors dorsalis
zebrafish_anatomy
ZFA:0007050
constrictor dorsalis
Dorsal subdivision of the putative mandibular muscle plate. Splits into the dilatator operculi and the levator arcus palatini.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-970819-13
constrictors dorsalis
Is a ventral paired hyoid muscle that has attachment sites on the basihyal and the posterior end of the ceratohyals and functions in jaw opening.
TAO:0007051
interhyal
ventral interhyoidei
ventral interhyoideus
zebrafish_anatomy
ZFA:0007051
interhyoideus
Is a ventral paired hyoid muscle that has attachment sites on the basihyal and the posterior end of the ceratohyals and functions in jaw opening.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
ventral interhyoidei
Is a ventral,paired hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure.
TAO:0007052
hyohyal
zebrafish_anatomy
ZFA:0007052
hyohyoideus
Is a ventral,paired hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
Is a dorsal, paired hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics.
TAO:0007053
dorsal adductor hyomandibulae
dorsal adductors hyomandibulae
zebrafish_anatomy
ZFA:0007053
adductor hyomandibulae
Is a dorsal, paired hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-020703-2
dorsal adductors hyomandibulae
Pillar of the semicircular canal around whose perimeter runs the anterior semicircular canal.
TAO:0007054
anterior hub of the semicircular canal
anterior pillar
anterior pillar of the semicircular canal
zebrafish_anatomy
horizontal hub
ZFA:0007054
pillar of the anterior semicircular canal
Pillar of the semicircular canal around whose perimeter runs the anterior semicircular canal.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-383
Pillar of the semicircular canal around whose perimeter runs the lateral semicircular canal.
TAO:0007055
lateral hub of the semicircular canal
ventral bar
ventral pillar
ventral piller of the semicircular canal
zebrafish_anatomy
ZFA:0007055
pillar of the lateral semicircular canal
Pillar of the semicircular canal around whose perimeter runs the lateral semicircular canal.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-383
Pillar of the semicircular canal around whose perimeter runs the posterior semicircular canal.
posterior hub of the semicircular canal
posterior pillar
posterior pillar of the semicircular
zebrafish_anatomy
horizontal hub
ZFA:0007056
pillar of the posterior semicircular canal
Pillar of the semicircular canal around whose perimeter runs the posterior semicircular canal.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-961014-383
Blood vessel within the eye.
TAO:0007057
eye vasculature
optic vasculature
zebrafish_anatomy
ocular vasculature
ZFA:0007057
ocular blood vessel
Blood vessel within the eye.
GOC:ymb
ORCiD:0000-0002-9900-7880
Multi-tissue structure that is the dorsal-most aspect of the developing neural tube.
TAO:0007058
zebrafish_anatomy
ZFA:0007058
roof plate
Multi-tissue structure that is the dorsal-most aspect of the developing neural tube.
GOC:ymb
ORCiD:0000-0002-9900-7880
Portion of tissue fated to develop into neurogenic placode.
TAO:0007059
neurogenic fields
zebrafish_anatomy
ZFA:0007059
neurogenic field
Portion of tissue fated to develop into neurogenic placode.
GOC:ymb
ORCiD:0000-0002-9900-7880
neurogenic fields
Neurogenic field fated to develop into a dorsolateral placode.
TAO:0007060
dorsolateral fields
zebrafish_anatomy
ZFA:0007060
dorsolateral field
Neurogenic field fated to develop into a dorsolateral placode.
GOC:ymb
ORCiD:0000-0002-9900-7880
dorsolateral fields
Neurogenic field fated to develop into an epibranchial placode.
TAO:0007061
epibranchial fields
zebrafish_anatomy
ZFA:0007061
epibranchial field
Neurogenic field fated to develop into an epibranchial placode.
GOC:ymb
ORCiD:0000-0002-9900-7880
epibranchial fields
Neurogenic field fated to develop into the olfactory placode.
TAO:0007062
olfactory fields
zebrafish_anatomy
ZFA:0007062
olfactory field
Neurogenic field fated to develop into the olfactory placode.
GOC:ymb
ORCiD:0000-0002-9900-7880
olfactory fields
Cranial neural crest that is part of the hindbrain.
Yvonne Bradford
2009-04-29T04:51:35Z
TAO:0007063
rhombencephalic neural crest
zebrafish_anatomy
ZFA:0007063
neural crest hindbrain
Cranial neural crest that is part of the hindbrain.
GOC:ymb
ORCiD:0000-0002-9900-7880
Cranial neural crest that migrates into the mandibular arch.
Yvonne Bradford
2009-04-29T04:53:53Z
TAO:0007064
zebrafish_anatomy
ZFA:0007064
mandibular neural crest
Cranial neural crest that migrates into the mandibular arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-061108-6
Cranial neural crest that migrates into the hyoid arch.
Yvonne Bradford
2009-04-29T04:56:12Z
TAO:0007065
zebrafish_anatomy
ZFA:0007065
hyoid neural crest
Cranial neural crest that migrates into the hyoid arch.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-061108-6
Cranial neural crest which gives rise to the glossopharyngeal ganglion.
Yvonne Bradford
2009-11-04T03:39:42Z
TAO:0007066
zebrafish_anatomy
ZFA:0007066
glossopharyngeal neural crest
Cranial neural crest which gives rise to the glossopharyngeal ganglion.
GOC:ymb
ORCiD:0000-0002-9900-7880
Yvonne Bradford
2010-04-21T09:45:38Z
TAO:0007067
gX
zebrafish_anatomy
ZFA:0007067
vagal ganglion
Is an epithelium of the auditory apparatus.
Yvonne Bradford
2011-04-26T12:34:16Z
zebrafish_anatomy
ZFA:0007068
otic epithelium
Is an epithelium of the auditory apparatus.
GOC:ymb
ORCiD:0000-0002-9900-7880
Is an otic epithelium composed of cells with a squamous morphology.
Yvonne Bradford
2011-04-26T12:38:05Z
zebrafish_anatomy
ZFA:0007069
otic squamous epithelium
Is an otic epithelium composed of cells with a squamous morphology.
GOC:ymb
ISBN:019514502X
ORCiD:0000-0002-9900-7880
Is an otic epithelium that is a neuroepithelium which is pseudostratified and senses sound.
Yvonne Bradford
2011-04-26T12:43:35Z
zebrafish_anatomy
ZFA:0007070
otic sensory epithelium
Is an otic epithelium that is a neuroepithelium which is pseudostratified and senses sound.
GOC:ymb
ORCiD:0000-0002-9900-7880
Is a portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin.
yvonne
2012-07-18T02:12:26Z
zebrafish_anatomy
ZFA:0007071
flexural organ
Is a portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-120709-5
Is a multitissue structure that accumulates blood.
yvonne
2014-10-24T02:12:44Z
zebrafish_anatomy
ZFA:0007072
blood sinus
Is a multitissue structure that accumulates blood.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
An enlarged chamber in the blood sinus capable of accumulating a large volume of blood.
yvonne
2014-10-24T02:14:28Z
blood sinus lumen
zebrafish_anatomy
ZFA:0007073
blood sinus cavity
An enlarged chamber in the blood sinus capable of accumulating a large volume of blood.
GOC:ymb
ORCiD:0000-0002-9900-7880
Is a three-chambered blood sinus found at the base of the maxillary barbel. Responsible, in part, for the movement of the maxillary barbel.
yvonne
2014-10-24T02:18:03Z
zebrafish_anatomy
ZFA:0007074
maxillary barbel blood sinus
Is a three-chambered blood sinus found at the base of the maxillary barbel. Responsible, in part, for the movement of the maxillary barbel.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-140816-6
Is a multi-tissue structure forming the smallest chamber of the maxillary barbel blood sinus. It projects into the barbel shaft and has a blood filled lumen, into which extend irregular septa of vascular smooth muscle cells. Additional smooth muscle cells surround the lumen and attach the bulb to the barbel core. Circumferential to the core, there is a thin band of dermal tissue through with run several smaller capillaries and the barbel branch of the of the facial nerve (cranial nerve VII). The entire structure is wrapped by a glandular, stratified epithelium.
yvonne
2014-10-24T02:22:04Z
zebrafish_anatomy
ZFA:0007075
distal bulb of the maxillary blood sinus
Is a multi-tissue structure forming the smallest chamber of the maxillary barbel blood sinus. It projects into the barbel shaft and has a blood filled lumen, into which extend irregular septa of vascular smooth muscle cells. Additional smooth muscle cells surround the lumen and attach the bulb to the barbel core. Circumferential to the core, there is a thin band of dermal tissue through with run several smaller capillaries and the barbel branch of the of the facial nerve (cranial nerve VII). The entire structure is wrapped by a glandular, stratified epithelium.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-140813-6
Is a multi-tissue structure that is located outside the maxillary barbel proper and is positioned on the lateral surface of the maxilla, medially attached to the lateral surface of the maxillary bone and is laterally is attached to a hemispheric capsule of dense connective tissue of the distal bulb. It connects with the smaller accessory chamber through a slight isthmus. It has a smooth muscle tunic from which extend luminally projecting muscular septa.
yvonne
2014-10-24T02:27:58Z
zebrafish_anatomy
ZFA:0007076
central chamber of the maxillary blood sinus
Is a multi-tissue structure that is located outside the maxillary barbel proper and is positioned on the lateral surface of the maxilla, medially attached to the lateral surface of the maxillary bone and is laterally is attached to a hemispheric capsule of dense connective tissue of the distal bulb. It connects with the smaller accessory chamber through a slight isthmus. It has a smooth muscle tunic from which extend luminally projecting muscular septa.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-140813-6
Is a multi-tissue structure part of the maxillary barbel blood sinus which is connected to the central chamber of the maxillary blood sinus by a slight isthmus. It is not muscularized, has no dense connective tissue capsule and is not attached to adjacent bone. Is composed of dark tunica intima wrapped by thick, light tunica adventitia; cells within the adventitia are widely separated, with extended cytoplasmic veils. External to the adventitia, a branch of the facial nerve and several smaller nerve bundles appear in cross section just lateral to the isthmus. These nerves are in the dermis, but outside the sinus.
yvonne
2014-10-24T02:34:40Z
zebrafish_anatomy
ZFA:0007077
accessory chamber of the maxillary blood sinus
Is a multi-tissue structure part of the maxillary barbel blood sinus which is connected to the central chamber of the maxillary blood sinus by a slight isthmus. It is not muscularized, has no dense connective tissue capsule and is not attached to adjacent bone. Is composed of dark tunica intima wrapped by thick, light tunica adventitia; cells within the adventitia are widely separated, with extended cytoplasmic veils. External to the adventitia, a branch of the facial nerve and several smaller nerve bundles appear in cross section just lateral to the isthmus. These nerves are in the dermis, but outside the sinus.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-140813-6
A blind end lymph vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper.
yvonne
2014-10-24T02:41:22Z
dorsal maxillary barbel lymph vessel
zebrafish_anatomy
ZFA:0007078
maxillary barbel lymph vessel
A blind end lymph vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-100121-1
ZFIN:ZDB-PUB-140816-6
Blood vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper. There are two ventral vessels that connect distally in the maxillary barbel forming a complete capillary loop.
yvonne
2014-10-24T02:46:19Z
ventral maxillary barbel blood vessel
zebrafish_anatomy
ZFA:0007079
maxillary barbel blood vessel
Blood vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper. There are two ventral vessels that connect distally in the maxillary barbel forming a complete capillary loop.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-100121-1
ZFIN:ZDB-PUB-140816-6
Is a vasculature that delivers fluid to the maxillary barbel.
yvonne
2014-10-24T02:52:05Z
zebrafish_anatomy
ZFA:0007080
maxillary barbel vasculature
Is a vasculature that delivers fluid to the maxillary barbel.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-100121-1
Is a vascular plexus at the base, or proximal end, of the developing maxillary barbel.
yvonne
2014-10-24T02:55:07Z
zebrafish_anatomy
ZFA:0007081
maxillary barbel proximal plexus
Is a vascular plexus at the base, or proximal end, of the developing maxillary barbel.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-100121-1
ZFIN:ZDB-PUB-140816-6
Region of the neural plate that will give rise to the neural crest. The neural plate border includes progenitors for the dorsal neural tube, the neural crest, and placodes. It is a broad competence domain, established between neural and non-neural ectoderm within which subtle and sequential cell autonomous and non-cell autonomous molecular interactions will progressively define the neural crest fate from adjacent dorsal neural fates.
yvonne
2016-01-28T08:43:28Z
zebrafish_anatomy
ZFA:0007082
neural plate border
Region of the neural plate that will give rise to the neural crest. The neural plate border includes progenitors for the dorsal neural tube, the neural crest, and placodes. It is a broad competence domain, established between neural and non-neural ectoderm within which subtle and sequential cell autonomous and non-cell autonomous molecular interactions will progressively define the neural crest fate from adjacent dorsal neural fates.
GOC:ymb
ORCiD:0000-0002-9900-7880
PMID:22305800
Premigratory neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory neural crest.
yvonne
2016-01-28T09:06:50Z
zebrafish_anatomy
ZFA:0007083
premigratory neural crest
Premigratory neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
Cell that is part of the premigratory neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory neural crest.
yvonne
2016-01-28T09:29:06Z
CL:0007004
premigratory neural crest cells
zebrafish_anatomy
ZFA:0007084
premigratory neural crest cell
Cell that is part of the premigratory neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
premigratory neural crest cells
Migratory neural crest population that develops from premigratory neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination.
yvonne
2016-01-28T12:04:14Z
zebrafish_anatomy
ZFA:0007085
migratory neural crest
Migratory neural crest population that develops from premigratory neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination.
GOC:ymb
ORCiD:0000-0002-9900-7880
Cell that is part of the migratory neural crest population. Migratory neural crest cells develop from premigratory neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
yvonne
2016-01-28T01:35:09Z
CL:0000333
migratory neural crest cells
zebrafish_anatomy
ZFA:0007086
migratory neural crest cell
Cell that is part of the migratory neural crest population. Migratory neural crest cells develop from premigratory neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
GOC:ymb
ORCiD:0000-0002-9900-7880
migratory neural crest cells
Migratory cranial neural crest population that develops from premigratory cranial neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination.
yvonne
2016-03-07T11:45:15Z
zebrafish_anatomy
ZFA:0007087
migratory cranial neural crest
Migratory cranial neural crest population that develops from premigratory cranial neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination.
GOC:ymb
ORCiD:0000-0002-9900-7880
Premigratory cranial neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory cranial neural crest.
yvonne
2016-03-07T03:27:33Z
zebrafish_anatomy
ZFA:0007088
premigratory cranial neural crest
Premigratory cranial neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory cranial neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
A cell of the embryo.
yvonne
2016-03-30T01:24:36Z
CL:0002321
zebrafish_anatomy
ZFA:0007089
embryonic cell
A cell of the embryo.
CL:curator
Cell that is part of the premigratory cranial neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory cranial neural crest.
yvonne
2016-03-31T12:37:58Z
premigratory cranial neural crest cells
zebrafish_anatomy
ZFA:0007090
premigratory cranial neural crest cell
Cell that is part of the premigratory cranial neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory cranial neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
premigratory cranial neural crest cells
Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
yvonne
2016-03-31T12:43:55Z
CL:0000008
migratory cranial neural crest cells
zebrafish_anatomy
ZFA:0007091
migratory cranial neural crest cell
Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
GOC:ymb
ORCiD:0000-0002-9900-7880
migratory cranial neural crest cells
Premigratory trunk neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory trunk neural crest.
yvonne
2016-03-31T01:03:25Z
zebrafish_anatomy
ZFA:0007092
premigratory trunk neural crest
Premigratory trunk neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory trunk neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
Migratory trunk neural crest population that develops from premigratory trunk neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination.
yvonne
2016-03-31T01:11:09Z
zebrafish_anatomy
ZFA:0007093
migratory trunk neural crest
Migratory trunk neural crest population that develops from premigratory trunk neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination.
GOC:ymb
ORCiD:0000-0002-9900-7880
Cell that is part of the premigratory trunk neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory trunk neural crest.
yvonne
2016-03-31T01:18:04Z
premigratory trunk neural crest cells
zebrafish_anatomy
ZFA:0007094
premigratory trunk neural crest cell
Cell that is part of the premigratory trunk neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory trunk neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
premigratory trunk neural crest cells
Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
yvonne
2016-03-31T01:22:09Z
CL:0000011
migratory trunk neural crest cells
zebrafish_anatomy
ZFA:0007095
migratory trunk neural crest cell
Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
GOC:ymb
ORCiD:0000-0002-9900-7880
migratory trunk neural crest cells
Vertebra that is posteriorly adjacent to vertebra 12.
yvonne
2016-10-19T14:15:01Z
zebrafish_anatomy
ZFA:0007096
vertebra 13
Vertebra that is posteriorly adjacent to vertebra 12.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 13.
yvonne
2016-10-19T14:22:33Z
zebrafish_anatomy
ZFA:0007097
vertebra 14
Vertebra that is posteriorly adjacent to vertebra 13.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 14.
yvonne
2016-10-19T15:10:35Z
zebrafish_anatomy
ZFA:0007098
vertebra 15
Vertebra that is posteriorly adjacent to vertebra 14.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 15.
yvonne
2016-10-19T15:15:45Z
zebrafish_anatomy
ZFA:0007099
vertebra 16
Vertebra that is posteriorly adjacent to vertebra 15.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 16.
yvonne
2016-10-19T15:17:20Z
zebrafish_anatomy
ZFA:0007100
vertebra 17
Vertebra that is posteriorly adjacent to vertebra 16.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 17.
yvonne
2016-10-19T15:19:07Z
zebrafish_anatomy
ZFA:0007101
vertebra 18
Vertebra that is posteriorly adjacent to vertebra 17.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 18.
yvonne
2016-10-19T15:20:46Z
zebrafish_anatomy
ZFA:0007102
vertebra 19
Vertebra that is posteriorly adjacent to vertebra 18.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 19.
yvonne
2016-10-19T15:22:42Z
zebrafish_anatomy
ZFA:0007103
vertebra 20
Vertebra that is posteriorly adjacent to vertebra 19.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 20.
yvonne
2016-10-19T15:24:43Z
zebrafish_anatomy
ZFA:0007104
vertebra 21
Vertebra that is posteriorly adjacent to vertebra 20.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 21.
yvonne
2016-10-19T15:26:15Z
zebrafish_anatomy
ZFA:0007105
vertebra 22
Vertebra that is posteriorly adjacent to vertebra 21.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 22.
yvonne
2016-10-19T15:29:09Z
zebrafish_anatomy
ZFA:0007106
vertebra 23
Vertebra that is posteriorly adjacent to vertebra 22.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 23.
yvonne
2016-10-19T15:31:04Z
zebrafish_anatomy
ZFA:0007107
vertebra 24
Vertebra that is posteriorly adjacent to vertebra 23.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 24.
yvonne
2016-10-19T15:32:40Z
zebrafish_anatomy
ZFA:0007108
vertebra 25
Vertebra that is posteriorly adjacent to vertebra 24.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 25.
yvonne
2016-10-19T15:34:15Z
zebrafish_anatomy
ZFA:0007109
vertebra 26
Vertebra that is posteriorly adjacent to vertebra 25.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 26.
yvonne
2016-10-19T15:36:10Z
zebrafish_anatomy
ZFA:0007110
vertebra 27
Vertebra that is posteriorly adjacent to vertebra 26.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 27.
yvonne
2016-10-19T15:37:40Z
zebrafish_anatomy
ZFA:0007111
vertebra 28
Vertebra that is posteriorly adjacent to vertebra 27.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 28.
yvonne
2016-10-19T15:39:17Z
zebrafish_anatomy
ZFA:0007112
vertebra 29
Vertebra that is posteriorly adjacent to vertebra 28.
GOC:ymb
ORCiD:0000-0002-9900-7880
Vertebra that is posteriorly adjacent to vertebra 29.
yvonne
2016-10-19T15:41:01Z
zebrafish_anatomy
ZFA:0007113
vertebra 30
Vertebra that is posteriorly adjacent to vertebra 29.
GOC:ymb
ORCiD:0000-0002-9900-7880
An anatomical structure that is an opening or tube that connects two distinct anatomical spaces.
Yvonne
2018-03-23T11:46:06Z
zebrafish_anatomy
ZFA:0007114
anatomical conduit
An anatomical structure that is an opening or tube that connects two distinct anatomical spaces.
GOC:ymb
ORCid:0000-0002-9900-7880
An anatomical cluster composed of the heart and associated structures.
Yvonne
2018-03-26T11:52:32Z
zebrafish_anatomy
ZFA:0007115
pericardial region
An anatomical cluster composed of the heart and associated structures.
GOC:ymb
ORCid:0000-0002-9900-7880
An anatomical cluster composed of the organs of the pleuroperitoneal cavity and associated structures.
Yvonne
2018-03-26T14:19:43Z
zebrafish_anatomy
ZFA:0007116
pleuroperitoneal region
An anatomical cluster composed of the organs of the pleuroperitoneal cavity and associated structures.
GOC:ymb
ORCid:0000-0002-9900-7880
Joint between Meckel's cartilage and palatoquadrate cartilage.
Yvonne
2019-04-05T15:06:57Z
jaw joint
zebrafish_anatomy
ZFA:0007117
Meckel's cartilage-palatoquadrate cartilage joint
Joint between Meckel's cartilage and palatoquadrate cartilage.
GOC:ymb
ORCid:0000-0002-9900-7880
ZFIN:ZDB-PUB-151122-6
The vertebral body end plate is part of the autocentrum. The anterior and posterior surfaces of the autocentrum constitute the funnel shaped vertebral body end plates. The outer rim of the end plate is the vertebral body growth zone. The anterior and posterior end plates are connected by bony plates that are horizontally attached to the ourter contour of the autocentrum.
Yvonne
2019-04-08T12:21:06Z
vertebral body endplate
zebrafish_anatomy
ZFA:0007118
vertebral body end plate
The vertebral body end plate is part of the autocentrum. The anterior and posterior surfaces of the autocentrum constitute the funnel shaped vertebral body end plates. The outer rim of the end plate is the vertebral body growth zone. The anterior and posterior end plates are connected by bony plates that are horizontally attached to the ourter contour of the autocentrum.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-180228-2
Ligament that connects adjacent vertebra. The intervertebral ligament (IVL) connects the posterior vertebral end plate to the anterior vertebral end plate of adjacent vertebra. For example the IVL connects the posterior end plate of vertebra 14 to the anterior end plate of vertebra 15. It is typically composed of three distinct layers: the notochord sheet which is mainly type II collagen; the outer elastin layer; and a layer of type I collagen fiber bundles.
Yvonne
2019-04-08T13:27:22Z
IVL
zebrafish_anatomy
ZFA:0007119
intervertebral ligament
Ligament that connects adjacent vertebra. The intervertebral ligament (IVL) connects the posterior vertebral end plate to the anterior vertebral end plate of adjacent vertebra. For example the IVL connects the posterior end plate of vertebra 14 to the anterior end plate of vertebra 15. It is typically composed of three distinct layers: the notochord sheet which is mainly type II collagen; the outer elastin layer; and a layer of type I collagen fiber bundles.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-180808-7
Spinal cord interneuron located along the central canal that extends a microvilliated apical process into the cerebrospinal fluid and extends ascending axonal projections ventrally and ipsilaterally. CSF-cNs are GABAergic neurons that express PKD2L1 (TRPP3) channels and have been shown to be chemosensory and mechanosensory, responding to pH and osmolarity changes as well as mechanical stimuli associated with tail bending. CSF-cNs originate from two distinct progenitor domains, p3 and pMN. CSF-cNs project onto caudal primary (CaP motor neurons) and commissural primary ascending (CoPA) sensory interneurons within the escape circuit as well as onto V0-v interneurons within the slow swimming circuit.
Yvonne
2020-03-03T10:15:16Z
CSF-cN
CSF-cNs
zebrafish_anatomy
ZFA:0007120
cerebrospinal fluid contacting neuron
Spinal cord interneuron located along the central canal that extends a microvilliated apical process into the cerebrospinal fluid and extends ascending axonal projections ventrally and ipsilaterally. CSF-cNs are GABAergic neurons that express PKD2L1 (TRPP3) channels and have been shown to be chemosensory and mechanosensory, responding to pH and osmolarity changes as well as mechanical stimuli associated with tail bending. CSF-cNs originate from two distinct progenitor domains, p3 and pMN. CSF-cNs project onto caudal primary (CaP motor neurons) and commissural primary ascending (CoPA) sensory interneurons within the escape circuit as well as onto V0-v interneurons within the slow swimming circuit.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-170409-2
CSF-cN
ZFIN:ZDB-PUB-170409-2
CSF-cNs
ZFIN:ZDB-PUB-170409-2
A cerebrospinal fluid contacting neuron that originates form p3 progenitor domain. The apical extension of ventral CSF-cNs are more compact than that of dorsal CSF-cNs. Ventral CSF-cNs synapse with CaP motor neurons and project onto CoPA sensory interneurons. Ventral CSF-cNs respond to longitudinal contractions of the spinal cord. Frequently called KA" neurons.
Yvonne
2020-03-03T10:51:35Z
ventral CSF-cN
ventral CSF-cNs
zebrafish_anatomy
KA 2
ZFA:0007121
ventral cerebrospinal fluid contacting neuron
A cerebrospinal fluid contacting neuron that originates form p3 progenitor domain. The apical extension of ventral CSF-cNs are more compact than that of dorsal CSF-cNs. Ventral CSF-cNs synapse with CaP motor neurons and project onto CoPA sensory interneurons. Ventral CSF-cNs respond to longitudinal contractions of the spinal cord. Frequently called KA" neurons.
GOC:ymb
ORDiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-170409-2
ventral CSF-cN
ZFIN:ZDB-PUB-170409-2
ventral CSF-cNs
ZFIN:ZDB-PUB-170409-2
A stem cell that gives rise to several epidermal cell types, including ionocytes and keratinocytes.
Yvonne
2020-03-03T13:31:57Z
CL:1000428
zebrafish_anatomy
<new synonym>
ZFA:0007122
epidermal stem cell
A stem cell that gives rise to several epidermal cell types, including ionocytes and keratinocytes.
GOC:ymb
ORCiD:0000-0002-9900-7880
A cell that will become an ionocyte. Ionocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC and Tp63 positive.
Yvonne
2020-03-03T14:01:21Z
ionocyte progenitor cells
zebrafish_anatomy
ZFA:0007123
ionocyte progenitor cell
A cell that will become an ionocyte. Ionocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC and Tp63 positive.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-190402-19
ionocyte progenitor cells
A cell that will become a keratinocyte. Keratinocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC negative and Tp63 positive.
Yvonne
2020-03-03T14:12:30Z
keratinocyte progenitor cells
zebrafish_anatomy
ZFA:0007124
keratinocyte progenitor cell
A cell that will become a keratinocyte. Keratinocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC negative and Tp63 positive.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-190402-19
keratinocyte progenitor cells
A portion of tissue that is the deepest point of the fold of the midbrain hindbrain boundary. In zebrafish the midbrain hindbrain boundary constriction (MHBC) is formed soon after neural tube closure. The MHBC is formed by the bending of the basal side of the neuroepithelium.
Yvonne
2020-03-04T12:35:25Z
MHBC
zebrafish_anatomy
ZFA:0007125
midbrain hindbrain boundary constriction
A portion of tissue that is the deepest point of the fold of the midbrain hindbrain boundary. In zebrafish the midbrain hindbrain boundary constriction (MHBC) is formed soon after neural tube closure. The MHBC is formed by the bending of the basal side of the neuroepithelium.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-080825-24
MHBC
ZFIN:ZDB-PUB-080825-24
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
CARO:0000013
CL:0000000
TAO:0009000
cells
zebrafish_anatomy
ZFA:0009000
cell
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
CARO:MAH
ORCiD:0000-0001-9114-8737
cells
CL:0000006
TAO:0009001
receptor cells (sensu Animalia)
zebrafish_anatomy
ZFA:0009001
receptor cell (sensu Animalia)
receptor cells (sensu Animalia)
An embryonic cell that is formed before the germ layers have been formed.
CL:0000007
TAO:0009002
early embryonic cells
zebrafish_anatomy
ZFA:0009002
early embryonic cell
An embryonic cell that is formed before the germ layers have been formed.
CL:curator
early embryonic cells
A cell of the cranial neural crest.
cranial neural crest cells
zebrafish_anatomy
ZFA:0009003
cranial neural crest cell
A cell of the cranial neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
cranial neural crest cells
A cell of the trunk neural crest.
trunk neural crest cells
zebrafish_anatomy
ZFA:0009004
trunk neural crest cell
A cell of the trunk neural crest.
GOC:ymb
ORCiD:0000-0002-9900-7880
trunk neural crest cells
A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids.
CL:0000017
TAO:0009005
spermatocytes
zebrafish_anatomy
ZFA:0009005
spermatocyte
A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids.
CL:curator
spermatocytes
A mature male germ cell that develops from a spermatid.
CL:0000019
TAO:0009006
sperm cell
spermatozoid
spermatozoon
zebrafish_anatomy
ZFA:0009006
sperm
A mature male germ cell that develops from a spermatid.
CL:curator
An euploid male germ cell of an early stage of spermatogenesis.
ZFA:0001337
CL:0000020
TAO:0001337
TAO:0009007
spermatogonia
zebrafish_anatomy
ZFA:0009007
spermatogonium
An euploid male germ cell of an early stage of spermatogenesis.
CL:curator
spermatogonia
true
CL:0000029
TAO:0009009
zebrafish_anatomy
ZFA:0009009
neuron neural crest derived
CL:0000030
TAO:0009010
glioblasts
zebrafish_anatomy
ZFA:0009010
glioblast
glioblasts
CL:0000031
TAO:0009011
neuroblasts
zebrafish_anatomy
ZFA:0009011
neuroblast
neuroblasts
CL:0000032
TAO:0009012
neuroplacodal cells
zebrafish_anatomy
ZFA:0009012
neuroplacodal cell
neuroplacodal cells
CL:0000035
TAO:0009013
single fate stem cells
zebrafish_anatomy
ZFA:0009013
single fate stem cell
single fate stem cells
A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system.
CL:0000037
TAO:0009014
HSC
hemopoietic stem cell
zebrafish_anatomy
colony forming unit hematopoietic
hematopoietic progenitor cell
hemopoietic progenitor cell
ZFA:0009014
hematopoietic stem cell
A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system.
CL:curator
A progenitor cell committed to the erythroid lineage.
CL:0000038
TAO:0009015
zebrafish_anatomy
BFU-E
CFU-E
blast forming unit erythroid
burst forming unit erythroid
colony forming unit erythroid
erythroid stem cell
ZFA:0009015
erythroid progenitor cell
A progenitor cell committed to the erythroid lineage.
ZFIN:ZDB-PUB-070221-1
A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.
CL:0000039
TAO:0009016
germ line cells
zebrafish_anatomy
ZFA:0009016
germ line cell
A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.
GOC:tfm
germ line cells
A myeloid progenitor cell committed to the monocyte lineage.
CL:0000040
TAO:0009017
CFU-M
colony forming unit macrophage
monocyte stem cell
zebrafish_anatomy
ZFA:0009017
monoblast
A myeloid progenitor cell committed to the monocyte lineage.
CL:curator
http://www.copewithcytokines.de
A myeloblast committed to the neutrophil lineage. A myeloblast is the most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm.
CL:0000042
TAO:0009018
zebrafish_anatomy
neutrophilic granuloblast
ZFA:0009018
neutrophilic myeloblast
A myeloblast committed to the neutrophil lineage. A myeloblast is the most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm.
ZFIN:ZDB-PUB-070221-1
CL:0000047
TAO:0009019
neuronal stem cells
zebrafish_anatomy
ZFA:0009019
neuronal stem cell
neuronal stem cells
A stem cell that can give rise to mulitple lineages of cells.
CL:0000048
TAO:0009020
multipotent stem cell
zebrafish_anatomy
ZFA:0009020
multi fate stem cell
A stem cell that can give rise to mulitple lineages of cells.
CL:curator
A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.
CL:0000049
TAO:0009021
CMP
zebrafish_anatomy
colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte
multipotential myeloid stem cell
myeloid stem cell
pluripotent stem cell (bone marrow)
ZFA:0009021
common myeloid progenitor
A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.
ZFIN:ZDB-PUB-070221-2
CMP
ZFIN:ZDB-PUB-070221-2
colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte
ZFIN:ZDB-PUB-070221-2
multipotential myeloid stem cell
ZFIN:ZDB-PUB-070221-2
myeloid stem cell
ZFIN:ZDB-PUB-070221-2
pluripotent stem cell (bone marrow)
ZFIN:ZDB-PUB-070221-2
A progenitor cell committed to the megakaryocyte and erythroid lineages.
CL:0000050
TAO:0009022
MEP
colony forming unit erythroid megakaryocyte
zebrafish_anatomy
ZFA:0009022
megakaryocyte erythroid progenitor cell
A progenitor cell committed to the megakaryocyte and erythroid lineages.
CL:curator
An oligopotent progenitor cell committed to the lymphoid lineage.
CL:0000051
TAO:0009023
CLP
zebrafish_anatomy
ELP
committed lymphopoietic stem cell
early lymphocyte progenitor
lymphoid stem cell
lymphopoietic stem cell
ZFA:0009023
common lymphoid progenitor
An oligopotent progenitor cell committed to the lymphoid lineage.
CL:curator
A stem cell from which all cells of the body can form.
CL:0000052
TAO:0009024
totipotent stem cells
zebrafish_anatomy
ZFA:0009024
totipotent stem cell
A stem cell from which all cells of the body can form.
CL:curator
totipotent stem cells
An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes.
CL:0000056
TAO:0009025
myoblasts
zebrafish_anatomy
ZFA:0009025
myoblast
An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes.
CL:curator
myoblasts
A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules.
CL:0000057
TAO:0009026
fibroblasts
zebrafish_anatomy
ZFA:0009026
Not in CL.
fibroblast
A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules.
CL:curator
fibroblasts
Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium).
CL:0000058
TAO:0009027
chondroblasts
zebrafish_anatomy
ZFA:0009027
chondroblast
Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium).
GOC:tfm
chondroblasts
A cylindrical epithelial cell in the innermost layer of the enamel organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamel), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992).
CL:0000059
TAO:0009028
ameloblasts
zebrafish_anatomy
ZFA:0009028
ameloblast
A cylindrical epithelial cell in the innermost layer of the enamel organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamel), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992).
CL:curator
ameloblasts
Skeletogenic cell that secretes dentine matrix, is derived from the tooth pulp.
CL:0000060
TAO:0009029
odontoblasts
zebrafish_anatomy
ZFA:0009029
odontoblast
Skeletogenic cell that secretes dentine matrix, is derived from the tooth pulp.
GOC:cvs
odontoblasts
A cell of ectomesenchymal origin concerned with the formation of the layer of cementum on the roots of teeth.
CL:0000061
TAO:0009030
cementoblasts
zebrafish_anatomy
ZFA:0009030
cementoblast
A cell of ectomesenchymal origin concerned with the formation of the layer of cementum on the roots of teeth.
ISBN:0781733901
cementoblasts
A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone.
CL:0000062
TAO:0009031
osteoblasts
zebrafish_anatomy
ZFA:0009031
osteoblast
A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone.
CL:curator
osteoblasts
CL:0000064
TAO:0009032
ciliated cells
zebrafish_anatomy
ZFA:0009032
ciliated cell
ciliated cells
A neurectoderm derived cell that lines the neural lumen.
CL:0000065
TAO:0009033
ependymocyte
zebrafish_anatomy
ZFA:0009033
ependymal cell
A neurectoderm derived cell that lines the neural lumen.
CL:curator
A cell that is usually found in a two-dimensional sheet with a free surface.
CL:0000066
TAO:0009034
epithelial cells
zebrafish_anatomy
ZFA:0009034
epithelial cell
A cell that is usually found in a two-dimensional sheet with a free surface.
CL:curator
epithelial cells
CL:0000067
TAO:0009035
ciliated epithelial cells
zebrafish_anatomy
ZFA:0009035
ciliated epithelial cell
ciliated epithelial cells
CL:0000071
TAO:0009036
blood vessel endothelial cells
zebrafish_anatomy
ZFA:0009036
blood vessel endothelial cell
blood vessel endothelial cells
CL:0000073
TAO:0009037
barrier epithelial cells
zebrafish_anatomy
ZFA:0009037
barrier epithelial cell
barrier epithelial cells
CL:0000075
TAO:0009038
columnar/cuboidal epithelial cells
zebrafish_anatomy
ZFA:0009038
columnar/cuboidal epithelial cell
columnar/cuboidal epithelial cells
CL:0000076
TAO:0009039
squamous epithelial cells
zebrafish_anatomy
ZFA:0009039
squamous epithelial cell
squamous epithelial cells
CL:0000077
TAO:0009040
mesothelial cells
zebrafish_anatomy
ZFA:0009040
mesothelial cell
mesothelial cells
CL:0000078
TAO:0009041
peridermal cells
zebrafish_anatomy
ZFA:0009041
peridermal cell
peridermal cells
CL:0000079
TAO:0009042
stratified epithelial cells
zebrafish_anatomy
ZFA:0009042
stratified epithelial cell
stratified epithelial cells
A cell which moves among different tissues of the body, via blood, lymph, or other medium.
CL:0000080
TAO:0009043
circulating cells
zebrafish_anatomy
ZFA:0009043
circulating cell
A cell which moves among different tissues of the body, via blood, lymph, or other medium.
CL:curator
circulating cells
A cell found predominately in the blood.
CL:0000081
TAO:0009044
blood cells
zebrafish_anatomy
ZFA:0009044
blood cell
A cell found predominately in the blood.
CL:curator
blood cells
CL:0000083
TAO:0009045
epithelial cells of pancreas
zebrafish_anatomy
ZFA:0009045
epithelial cell of pancreas
epithelial cells of pancreas
A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.
ZFA:0009340
ZFA:0009341
CL:0000084
TAO:0009046
TAO:0009340
TAO:0009341
T lymphocyte
T-cell
T-lymphocyte
immature T cell
immature T lymphocyte
immature T-cell
immature T-lymphocyte
mature T cell
mature T lymphocyte
mature T-cell
mature T-lymphocyte
zebrafish_anatomy
ZFA:0009046
CL:0000804 and CL:0000812 were merged in the cell ontology into CL:0000084.
T cell
A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.
ZFIN:ZDB-PUB-070221-3
A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes.
CL:0000092
TAO:0009047
zebrafish_anatomy
chondroclast
ZFA:0009047
Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid.
osteoclast
A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes.
CL:curator
ZFIN:ZDB-PUB-070221-3
A leukocyte with abundant granules in the cytoplasm.
CL:0000094
TAO:0009048
granulocytes
zebrafish_anatomy
ZFA:0009048
granulocyte
A leukocyte with abundant granules in the cytoplasm.
CL:curator
granulocytes
A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.
CL:0000096
TAO:0009049
PMN
mature neutrocyte
mature neutrophil leucocyte
mature neutrophil leukocyte
mature neutrophilic leucocyte
mature neutrophilic leukocyte
polymorphonuclear neutrophil
polynuclear neutrophilic leucocyte
polynuclear neutrophilic leukocyte
zebrafish_anatomy
poly
polymorphonuclear leucocyte
polymorphonuclear leukocyte
ZFA:0009049
mature neutrophil
A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.
CL:curator
CL:0000098
TAO:0009050
sensory epithelial cells
zebrafish_anatomy
ZFA:0009050
sensory epithelial cell
sensory epithelial cells
Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.
CL:0000099
TAO:0009051
interneurons
zebrafish_anatomy
ZFA:0009051
interneuron
Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.
CL:curator
interneurons
An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement.
CL:0000100
TAO:0009052
motoneuron
zebrafish_anatomy
ZFA:0009052
motor neuron
An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement.
CL:curator
ZFA:0000432
CL:0000101
TAO:0009053
zebrafish_anatomy
ZFA:0009053
sensory neuron
CL:0000102
TAO:0009054
polymodal neurons
zebrafish_anatomy
ZFA:0009054
polymodal neuron
polymodal neurons
A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body.
CL:0000103
TAO:0009055
bipolar neurons
zebrafish_anatomy
ZFA:0009055
bipolar neuron
A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body.
ZFIN:ZDB-PUB-070221-4
bipolar neurons
CL:0000104
TAO:0009056
multipolar neurons
zebrafish_anatomy
ZFA:0009056
multipolar neuron
multipolar neurons
CL:0000105
TAO:0009057
pseudounipolar neurons
zebrafish_anatomy
ZFA:0009057
pseudounipolar neuron
pseudounipolar neurons
CL:0000106
TAO:0009058
unipolar neurons
zebrafish_anatomy
ZFA:0009058
unipolar neuron
unipolar neurons
CL:0000107
TAO:0009059
autonomic neurons
zebrafish_anatomy
ZFA:0009059
autonomic neuron
autonomic neurons
A neuron that uses acetylcholine as a vesicular neurotransmitter.
CL:0000108
TAO:0009060
cholinergic neurons
zebrafish_anatomy
ZFA:0009060
cholinergic neuron
A neuron that uses acetylcholine as a vesicular neurotransmitter.
GOC:tfm
cholinergic neurons
CL:0000109
TAO:0009061
adrenergic neurons
zebrafish_anatomy
ZFA:0009061
adrenergic neuron
adrenergic neurons
CL:0000110
TAO:0009062
peptidergic neurons
zebrafish_anatomy
ZFA:0009062
peptidergic neuron
peptidergic neurons
CL:0000111
TAO:0009063
peripheral neurons
zebrafish_anatomy
ZFA:0009063
peripheral neuron
peripheral neurons
A vertebrate phagocyte with a single nucleus.
CL:0000113
TAO:0009064
mononuclear phagocytes
zebrafish_anatomy
ZFA:0009064
mononuclear phagocyte
A vertebrate phagocyte with a single nucleus.
ZFIN:ZDB-PUB-070221-3
mononuclear phagocytes
CL:0000115
TAO:0009065
endothelial cells
zebrafish_anatomy
ZFA:0009065
endothelial cell
endothelial cells
Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance.
ZFA:0000409
CL:0000116
TAO:0009066
zebrafish_anatomy
ZFA:0009066
pioneer neuron
Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance.
GOC:mh
ORCiD:0000-0001-9114-8737
ZFIN:ZDB-PUB-070131-1
CL:0000117
TAO:0009067
CNS neurons (sensu Vertebrata)
zebrafish_anatomy
ZFA:0009067
CNS neuron (sensu Vertebrata)
CNS neurons (sensu Vertebrata)
CL:0000118
TAO:0009068
basket cells
zebrafish_anatomy
ZFA:0009068
basket cell
basket cells
CL:0000119
TAO:0009069
Golgi cells
zebrafish_anatomy
ZFA:0009069
Golgi cell
Golgi cells
CL:0000120
TAO:0009070
granule cells
zebrafish_anatomy
ZFA:0009070
granule cell
granule cells
The output neuron of the cerebellar cortex.
CL:0000121
TAO:0009071
Purkinje cells
zebrafish_anatomy
ZFA:0009071
Purkinje cell
The output neuron of the cerebellar cortex.
CL:curator
Purkinje cells
CL:0000122
TAO:0009072
stellate cells
zebrafish_anatomy
ZFA:0009072
stellate cell
stellate cells
A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.
ZFA:0000025
CL:0000125
TAO:0009073
neuroglia
zebrafish_anatomy
ZFA:0009073
glial cell
A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.
CL:curator
CL:0000126
TAO:0009074
macroglial cells
zebrafish_anatomy
ZFA:0009074
macroglial cell
macroglial cells
A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury.
CL:0000127
TAO:0009075
astrocytes
zebrafish_anatomy
ZFA:0009075
astrocyte
A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury.
CL:curator
astrocytes
A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system.
CL:0000128
TAO:0009076
zebrafish_anatomy
oligodendroglia
ZFA:0009076
oligodendrocyte
A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system.
CL:curator
A central nervous system macrophage found in the parenchyma of the central nervous system.
CL:0000129
TAO:0009077
microglia
zebrafish_anatomy
ZFA:0009077
microglial cell
A central nervous system macrophage found in the parenchyma of the central nervous system.
ZFIN:ZDB-PUB-070221-1
CL:0000131
TAO:0009078
gut endothelial cells
zebrafish_anatomy
ZFA:0009078
gut endothelial cell
gut endothelial cells
Cell of the single layer of large flattened cells covering the surface of the cornea.
CL:0000132
TAO:0009079
corneal endothelial cells
zebrafish_anatomy
ZFA:0009079
corneal endothelial cell
Cell of the single layer of large flattened cells covering the surface of the cornea.
CL:curator
corneal endothelial cells
CL:0000133
TAO:0009080
neurectoderm cell
zebrafish_anatomy
ZFA:0009080
neurectodermal cell
A cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.
CL:0000134
TAO:0009081
mesenchymal cells
zebrafish_anatomy
ZFA:0009081
mesenchymal cell
A cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.
CL:curator
mesenchymal cells
A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. Cell that stores fat in a unilocular lipid droplet, has a thin circular cytoplasm and pericentral nucleus. The average adult adipocyte diameter is between 30 and 40 micrometers. No adipocytes were observed in larvae on 6 or 9 dpf.
ZFA:0009208
CL:0000136
CL:0000450
TAO:0009082
TAO:0009208
adipocyte
lipocyte
lipocytes
zebrafish_anatomy
ZFA:0009082
fat cell
A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. Cell that stores fat in a unilocular lipid droplet, has a thin circular cytoplasm and pericentral nucleus. The average adult adipocyte diameter is between 30 and 40 micrometers. No adipocytes were observed in larvae on 6 or 9 dpf.
CL:curator
ZFIN:ZDB-PUB-090417-9
ZFIN:ZDB-PUB-101011-51
A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi.
CL:0000137
TAO:0009083
osteocytes
zebrafish_anatomy
ZFA:0009083
osteocyte
A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi.
CL:curator
osteocytes
Polymorphic cell that form cartilage.
CL:0000138
TAO:0009084
chondrocytes
zebrafish_anatomy
ZFA:0009084
chondrocyte
Polymorphic cell that form cartilage.
CL:curator
chondrocytes
Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell.
CL:0000059
TAO:0009085
amelocytes
zebrafish_anatomical_ontology
ZFA:0009085
Was CL:0000139, seems that cell type was merged into CL:0000059 along with CL:0000053.
amelocyte
Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell.
GOC:tfm
amelocytes
CL:0000140
TAO:0009086
odontocytes
zebrafish_anatomy
ZFA:0009086
odontocyte
odontocytes
An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth.
CL:0000141
TAO:0009087
cementocytes
zebrafish_anatomy
ZFA:0009087
cementocyte
An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth.
ISBN:0781733901
cementocytes
A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response.
CL:0000145
TAO:0009088
APC
zebrafish_anatomy
ZFA:0009088
Note change of name; nearly all somatic cells can present antigens to T cells via MHC Class I complexes leading to effector responses, but professional antigen presenting cells constitutively express MHC Class II as well as constimulatory molecules, and thus can initiate immune responses via T cells.
professional antigen presenting cell
A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response.
ZFIN:ZDB-PUB-070221-3
CL:0000146
TAO:0009089
simple columnar epithelial cells
zebrafish_anatomy
ZFA:0009089
simple columnar epithelial cell
simple columnar epithelial cells
ZFA:0000057
CL:0000147
TAO:0009090
chromatocyte
chromatophore
zebrafish_anatomy
ZFA:0009090
pigment cell
A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance.
ZFA:0001091
CL:0000148
TAO:0009091
melanophore
zebrafish_anatomy
ZFA:0009091
melanocyte
A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance.
CL:curator
A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct.
CL:0000152
TAO:0009092
exocrine cells
zebrafish_anatomy
ZFA:0009092
exocrine cell
A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct.
ZFIN:ZDB-PUB-070221-5
exocrine cells
CL:0000153
TAO:0009093
hyaluronic acid secreting cell
zebrafish_anatomy
ZFA:0009093
GAG secreting cell
A cell of the epithelial lining that produce and secrete mucins.
CL:0000160
TAO:0009094
chalice cell
zebrafish_anatomy
ZFA:0009094
goblet cell
A cell of the epithelial lining that produce and secrete mucins.
CL:curator
CL:0000161
TAO:0009095
acid secreting cells
zebrafish_anatomy
ZFA:0009095
acid secreting cell
acid secreting cells
A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.
CL:0000163
TAO:0009096
endocrine cells
zebrafish_anatomy
ZFA:0009096
endocrine cell
A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.
CL:curator
endocrine cells
An endocrine cell that is located in the epithelium of the gastrointestinal tract.
CL:0000164
TAO:0009097
enteroendocrine cells
zebrafish_anatomy
ZFA:0009097
enteroendocrine cell
An endocrine cell that is located in the epithelium of the gastrointestinal tract.
SANBI:curator
enteroendocrine cells
A neuron that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system.
CL:0000165
TAO:0009098
neurosecretory cell
zebrafish_anatomy
ZFA:0009098
neuroendocrine cell
A neuron that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system.
CL:curator
A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system.
CL:0000166
TAO:0009099
phaeochromocyte
zebrafish_anatomy
ZFA:0009099
chromaffin cell
A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system.
CL:curator
CL:0000167
TAO:0009100
peptide hormone secreting cells
zebrafish_anatomy
ZFA:0009100
peptide hormone secreting cell
peptide hormone secreting cells
CL:0000168
TAO:0009101
insulin secreting cells
zebrafish_anatomy
ZFA:0009101
insulin secreting cell
insulin secreting cells
CL:0000169
TAO:0009102
beta cell
zebrafish_anatomy
ZFA:0009102
pancreatic B cell
CL:0000170
TAO:0009103
glucagon secreting cells
zebrafish_anatomy
ZFA:0009103
glucagon secreting cell
glucagon secreting cells
CL:0000171
TAO:0009104
alpha cell
zebrafish_anatomy
ZFA:0009104
pancreatic A cell
CL:0000172
TAO:0009105
somatostatin secreting cells
zebrafish_anatomy
ZFA:0009105
somatostatin secreting cell
somatostatin secreting cells
CL:0000174
TAO:0009106
steroid hormone secreting cells
zebrafish_anatomy
ZFA:0009106
steroid hormone secreting cell
steroid hormone secreting cells
CL:0000177
TAO:0009107
testosterone secreting cells
zebrafish_anatomy
ZFA:0009107
testosterone secreting cell
testosterone secreting cells
A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis.
CL:0000178
TAO:0009108
interstitial cell
zebrafish_anatomy
ZFA:0009108
Leydig cell
A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis.
PMID:12050120
CL:0000179
TAO:0009109
progesterone secreting cells
zebrafish_anatomy
ZFA:0009109
progesterone secreting cell
progesterone secreting cells
CL:0000180
TAO:0009110
estradiol secreting cells
zebrafish_anatomy
ZFA:0009110
estradiol secreting cell
estradiol secreting cells
The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules.
CL:0000182
TAO:0009111
hepatocytes
zebrafish_anatomy
ZFA:0009111
hepatocyte
The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules.
CL:curator
hepatocytes
An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitial and muscle layer are missing (thus distinguishing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells.
CL:0000669
TAO:0009112
pericytes
perivascular cells
zebrafish_anatomy
ZFA:0009112
CL:0000184 was merged into CL:0000699.
pericyte
An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitial and muscle layer are missing (thus distinguishing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells.
CL:curator
ISBN:0721662544
PMID:16807374
PMID:17986482
PMID:20024907
pericytes
CL:0000185
TAO:0009113
myoepithelial cells
zebrafish_anatomy
ZFA:0009113
myoepithelial cell
myoepithelial cells
A mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle.
CL:0000187
TAO:0009114
myocyte
myofiber
zebrafish_anatomy
ZFA:0009114
muscle cell
A mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle.
CL:curator
CL:0000188
TAO:0009115
skeletal muscle fiber
zebrafish_anatomy
striated muscle cell
ZFA:0009115
skeletal muscle cell
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content.
ZFA:0001087
CL:0000189
TAO:0009116
red muscle cell
slow muscle fiber
zebrafish_anatomy
ZFA:0009116
slow muscle cell
A muscle cell that is small, darkly colored, with high lipid and mitochondrial content.
CL:curator
slow muscle fiber
ISBN:0815316208
A muscle cell that has a fast contractile response. Fast muscle fibers make up the deep portion of the myotome and are also known as white muscle cells.
ZFA:0001088
CL:0000190
TAO:0009117
fast muscle fiber
white muscle cell
zebrafish_anatomy
ZFA:0009117
fast muscle cell
A muscle cell that has a fast contractile response. Fast muscle fibers make up the deep portion of the myotome and are also known as white muscle cells.
GOC:ymb
ORCiD:0000-0002-9900-7880
ZFIN:ZDB-PUB-080501-8
ZFIN:ZDB-PUB-961219-12
A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).
CL:0000192
TAO:0009118
non-striated muscle cell
zebrafish_anatomy
ZFA:0009118
smooth muscle cell
A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).
CL:curator
The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings.
CL:0000198
TAO:0009119
nociceptor
nocireceptor
zebrafish_anatomy
ZFA:0009119
pain receptor cell
The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings.
CL:curator
A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system.
CL:0000199
TAO:0009120
mechanoreceptor cells
zebrafish_anatomy
ZFA:0009120
mechanoreceptor cell
A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system.
CL:curator
mechanoreceptor cells
A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.
CL:0000202
TAO:0009121
auditory hair cell
auditory receptor cells
zebrafish_anatomy
ZFA:0009121
Has alt_id CL:0000201.
auditory receptor cell
A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.
CL:curator
auditory receptor cells
ZFA:0009121
zebrafish_anatomy
ZFA:0009122
obsolete_auditory hair cell
true
A cellular receptor which mediates the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain.
CL:0000205
TAO:0009123
thermoreceptor cells
zebrafish_anatomy
ZFA:0009123
thermoreceptor cell
A cellular receptor which mediates the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain.
CL:curator
thermoreceptor cells
A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood.
CL:0000206
TAO:0009124
chemoreceptor cells
zebrafish_anatomy
ZFA:0009124
chemoreceptor cell
A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood.
CL:curator
chemoreceptor cells
CL:0000207
TAO:0009125
Schultze's cell
olfactory receptor neuron
olfactory sensory neuron
zebrafish_anatomy
ZFA:0009125
olfactory receptor cell
CL:0000209
TAO:0009126
taste receptor cells
zebrafish_anatomy
ZFA:0009126
taste receptor cell
taste receptor cells
A cell specialized to detect and transduce light.
CL:0000210
TAO:0009127
photoreceptor cells
zebrafish_anatomy
ZFA:0009127
photoreceptor cell
A cell specialized to detect and transduce light.
CL:curator
photoreceptor cells
A cell whose function is determined by the generation or the reception of an electric signal.
CL:0000211
TAO:0009128
electrically active cells
zebrafish_anatomy
ZFA:0009128
electrically active cell
A cell whose function is determined by the generation or the reception of an electric signal.
CL:curator
electrically active cells
A cell that takes up and metabolizes substances.
CL:0000212
TAO:0009129
absorptive cells
zebrafish_anatomy
ZFA:0009129
absorptive cell
A cell that takes up and metabolizes substances.
CL:curator
absorptive cells
A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.
CL:0000213
TAO:0009130
boundary cell
zebrafish_anatomy
ZFA:0009130
lining cell
A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.
CL:curator
CL:0000214
TAO:0009131
synovial cells
zebrafish_anatomy
ZFA:0009131
synovial cell
synovial cells
A cell whose primary function is to prevent the transport of stuff across compartments.
CL:0000215
TAO:0009132
barrier cells
zebrafish_anatomy
ZFA:0009132
barrier cell
A cell whose primary function is to prevent the transport of stuff across compartments.
CL:curator
barrier cells
A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier.
CL:0000216
TAO:0009133
Sertoli cells
zebrafish_anatomy
ZFA:0009133
Sertoli cell
A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier.
CL:curator
Sertoli cells
CL:0000217
TAO:0009134
insulating cells
zebrafish_anatomy
ZFA:0009134
insulating cell
insulating cells
A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons.
CL:0000218
TAO:0009135
Schwann cells
zebrafish_anatomy
ZFA:0009135
myelinating Schwann cell
A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons.
CL:curator
Schwann cells
A cell that moves by its own activities.
CL:0000219
TAO:0009136
motile cells
zebrafish_anatomy
ZFA:0009136
motile cell
A cell that moves by its own activities.
CL:curator
motile cells
A cell of the outer of the three germ layers of the embryo.
CL:0000221
TAO:0009137
ectoderm cell
zebrafish_anatomy
ZFA:0009137
ectodermal cell
A cell of the outer of the three germ layers of the embryo.
CL:curator
A cell of the middle germ layer of the embryo.
CL:0000222
TAO:0009138
mesoblast
mesoderm cell
zebrafish_anatomy
ZFA:0009138
mesodermal cell
A cell of the middle germ layer of the embryo.
CL:curator
A cell of the inner of the three germ layers of the embryo.
CL:0000223
TAO:0009139
endoderm cell
zebrafish_anatomy
ZFA:0009139
endodermal cell
A cell of the inner of the three germ layers of the embryo.
CL:curator
Any cell capable of ingesting particulate matter via phagocytosis.
CL:0000234
TAO:0009140
phagocytes
zebrafish_anatomy
ZFA:0009140
phagocyte
Any cell capable of ingesting particulate matter via phagocytosis.
ZFIN:ZDB-PUB-070221-1
phagocytes
A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.
CL:0000235
TAO:0009141
histiocyte
zebrafish_anatomy
ZFA:0009141
macrophage
A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.
CL:curator
A type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex.
CL:0000236
TAO:0009142
B lymphocyte
B-cell
B-lymphocyte
zebrafish_anatomy
ZFA:0009142
B cell
A type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex.
ZFIN:ZDB-PUB-070221-3
CL:0000239
TAO:0009143
brush border epithelial cells
zebrafish_anatomy
ZFA:0009143
brush border epithelial cell
brush border epithelial cells
CL:0000240
TAO:0009144
stratified squamous epithelial cells
zebrafish_anatomy
ZFA:0009144
stratified squamous epithelial cell
stratified squamous epithelial cells
CL:0000241
TAO:0009145
stratified cuboidal epithelial cells
zebrafish_anatomy
ZFA:0009145
stratified cuboidal epithelial cell
stratified cuboidal epithelial cells
A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber.
CL:0000242
TAO:0009146
Merkel cells
zebrafish_anatomy
ZFA:0009146
Merkel cell
A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber.
CL:curator
Merkel cells
A non-neuronal cells of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear.
CL:0000243
TAO:0009147
glial cells (sensu Vertebrata)
zebrafish_anatomy
ZFA:0009147
glial cell (sensu Vertebrata)
A non-neuronal cells of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear.
CL:curator
glial cells (sensu Vertebrata)
CL:0000244
TAO:0009148
transitional epithelial cells
zebrafish_anatomy
ZFA:0009148
transitional epithelial cell
transitional epithelial cells
Is a hindbrain interneuron. Giant reticulospinal neurons possessing thick crossed axons and positioned dorsally in the hindbrain tegmentum at the level of entrance of the eighth cranial nerve. The Mauthner neuron is paired. The M-cell has two large invariant dendrites: The lateral dendrite terminates in the sensory neuropil of the acoustico-lateral area, and the ventral dendrite terminates in the neuropil of the motor tegmentum. Fine dendrites are present, and mostly arise from three regions; from the terminus of each major dendrite and from the ventral surface of the perikaryon.
ZFA:0000087
ZFA:0000613
CL:0000246
TAO:0009149
zebrafish_anatomy
ZFA:0009149
Mauthner neuron
Is a hindbrain interneuron. Giant reticulospinal neurons possessing thick crossed axons and positioned dorsally in the hindbrain tegmentum at the level of entrance of the eighth cranial nerve. The Mauthner neuron is paired. The M-cell has two large invariant dendrites: The lateral dendrite terminates in the sensory neuropil of the acoustico-lateral area, and the ventral dendrite terminates in the neuropil of the motor tegmentum. Fine dendrites are present, and mostly arise from three regions; from the terminus of each major dendrite and from the ventral surface of the perikaryon.
GOC:CVS
GOC:MH
ORCiD:0000-0001-9114-8737
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-961014-599
ZFIN:ZDB-PUB-961014-770
Primary sensory neurons with cell bodies located in the dorsal spinal cord, that innervate the integument of the trunk and tail at early larval stages. The cutaneous axons of Rohon-Beard neurons display a broad spectrum of peripheral axon branching patterns. Most Rohon-Beard neurons undergo apoptosis by 5dpf.
ZFA:0000002
CL:0000247
TAO:0009150
RB neuron
Rohon-Beard cell
Rohon-Beard neurons
zebrafish_anatomy
ZFA:0009150
Rohon-Beard neuron
Primary sensory neurons with cell bodies located in the dorsal spinal cord, that innervate the integument of the trunk and tail at early larval stages. The cutaneous axons of Rohon-Beard neurons display a broad spectrum of peripheral axon branching patterns. Most Rohon-Beard neurons undergo apoptosis by 5dpf.
ZFIN:ZDB-PUB-120807-45
Rohon-Beard neurons
CL:0000249
TAO:0009151
hatching gland cells
zebrafish_anatomy
ZFA:0009151
hatching gland cell
hatching gland cells
CL:0000251
TAO:0009152
extramedullary cells
zebrafish_anatomy
ZFA:0009152
extramedullary cell
extramedullary cells
CL:0000253
TAO:0009153
eurydendroid cells
zebrafish_anatomy
ZFA:0009153
eurydendroid cell
eurydendroid cells
CL:0000287
TAO:0009154
eye photoreceptor cells
zebrafish_anatomy
ZFA:0009154
eye photoreceptor cell
eye photoreceptor cells
An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin.
CL:0000295
TAO:0009155
somatotrophin secreting cell
somatotropic cell
zebrafish_anatomy
growth hormone secreting cell
somatotrope
somatotroph
somatrophic cell
ZFA:0009155
somatotropin secreting cell
An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin.
CL:curator
A mature sexual reproductive cell having a single set of unpaired chromosomes.
CL:0000300
TAO:0009156
gametes
zebrafish_anatomy
ZFA:0009156
gamete
A mature sexual reproductive cell having a single set of unpaired chromosomes.
GOC:tfm
gametes
CL:0000311
TAO:0009157
keratin accumulating cells
zebrafish_anatomy
ZFA:0009157
keratin accumulating cell
keratin accumulating cells
An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.
CL:0000312
TAO:0009158
keratinocytes
zebrafish_anatomy
ZFA:0009158
keratinocyte
An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.
CL:curator
keratinocytes
ZFA:0000129
CL:0000319
TAO:0009159
mucous cell
zebrafish_anatomy
ZFA:0009159
mucus secreting cell
CL:0000321
TAO:0009160
seminal fluid secreting cells
zebrafish_anatomy
ZFA:0009160
seminal fluid secreting cell
seminal fluid secreting cells
CL:0000324
TAO:0009161
metanephric mesenchyme stem cells
zebrafish_anatomy
ZFA:0009161
No metanephrose in zebrafish. Consider nephrogenic mesenchyme stem cell ZFA:0009187.
metanephric mesenchyme stem cell
true
metanephric mesenchyme stem cells
CL:0000327
TAO:0009162
extracellular matrix secreting cells
zebrafish_anatomy
ZFA:0009162
extracellular matrix secreting cell
extracellular matrix secreting cells
CL:0000328
TAO:0009163
myelin accumulating cells
zebrafish_anatomy
ZFA:0009163
myelin accumulating cell
myelin accumulating cells
CL:0000329
TAO:0009164
oxygen accumulating cells
zebrafish_anatomy
ZFA:0009164
oxygen accumulating cell
oxygen accumulating cells
A cell of the neural crest. The neural crest is a strip of specialized ectoderm, the neural plate border, which flanks each side of the embryonic neural plate. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesenchymal transition and delamination to form migratory neural crest cells. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells.
neural crest cells
zebrafish_anatomy
ZFA:0009165
neural crest cell
A cell of the neural crest. The neural crest is a strip of specialized ectoderm, the neural plate border, which flanks each side of the embryonic neural plate. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesenchymal transition and delamination to form migratory neural crest cells. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells.
GOC:ymb
ORCiD:0000-0002-9900-7880
neural crest cells
CL:0000335
TAO:0009166
mesenchyme condensation cells
zebrafish_anatomy
ZFA:0009166
mesenchyme condensation cell
mesenchyme condensation cells
CL:0000336
TAO:0009167
chromafin cell
zebrafish_anatomy
ZFA:0009167
adrenal medulla cell
CL:0000337
TAO:0009168
zebrafish_anatomy
ZFA:0009168
neuroblast (sensu Vertebrata)
CL:0000339
TAO:0009169
glioblasts (sensu Vertebrata)
zebrafish_anatomy
ZFA:0009169
glioblast (sensu Vertebrata)
glioblasts (sensu Vertebrata)
CL:0000342
TAO:0009170
pigment cells (sensu Vertebrata)
zebrafish_anatomy
ZFA:0009170
pigment cell (sensu Vertebrata)
pigment cells (sensu Vertebrata)
CL:0000343
TAO:0009171
visual pigment cells (sensu Vertebrata)
zebrafish_anatomy
ZFA:0009171
visual pigment cell (sensu Vertebrata)
visual pigment cells (sensu Vertebrata)
CL:0000344
TAO:0009172
non-visual cells (sensu Vertebrata)
zebrafish_anatomy
ZFA:0009172
Obsoleted because CL obsoleted. Consider pigment cell ZFA:0009090
non-visual cell (sensu Vertebrata)
true
non-visual cells (sensu Vertebrata)
CL:0000345
TAO:0009173
dental papilla cells
zebrafish_anatomy
ZFA:0009173
dental papilla cell
dental papilla cells
A cell of the sclera of the eye.
CL:0000347
TAO:0009174
scleral cells
zebrafish_anatomy
ZFA:0009174
scleral cell
A cell of the sclera of the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
scleral cells
A cell of the choroid of the eye.
CL:0000348
TAO:0009175
choroidal cells
zebrafish_anatomy
ZFA:0009175
choroidal cell of the eye
A cell of the choroid of the eye.
GOC:cvs
ORCiD:0000-0002-2244-7917
choroidal cells
CL:0000349
TAO:0009176
extraembryonic cells
zebrafish_anatomy
ZFA:0009176
extraembryonic cell
extraembryonic cells
An undifferentiated cell produced by early cleavages of the fertilized egg (zygote).
CL:0000353
TAO:0009177
zebrafish_anatomy
blastomere
ZFA:0009177
blastoderm cell
An undifferentiated cell produced by early cleavages of the fertilized egg (zygote).
CL:curator
CL:0000354
TAO:0009178
blastemal cells
zebrafish_anatomy
ZFA:0009178
blastemal cell
blastemal cells
CL:0000355
TAO:0009179
muscle stem cells
zebrafish_anatomy
ZFA:0009179
muscle stem cell
muscle stem cells
CL:0000357
TAO:0009180
stratified epithelial stem cells
zebrafish_anatomy
ZFA:0009180
stratified epithelial stem cell
stratified epithelial stem cells
CL:0000359
TAO:0009181
vascular associated smooth muscle cells
zebrafish_anatomy
ZFA:0009181
vascular associated smooth muscle cell
vascular associated smooth muscle cells
A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers.
CL:0000361
TAO:0009182
gastrula cells
zebrafish_anatomy
ZFA:0009182
gastrula cell
A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers.
CL:curator
gastrula cells
A cell found in the outermost layer of the organism.
CL:0000362
TAO:0009183
epidermal cells
zebrafish_anatomy
ZFA:0009183
epidermal cell
A cell found in the outermost layer of the organism.
CL:curator
epidermal cells
CL:0000375
TAO:0009184
osteoprogenitor cells
zebrafish_anatomy
ZFA:0009184
osteoprogenitor cell
osteoprogenitor cells
CL:0000379
TAO:0009185
sensory processing neurons
zebrafish_anatomy
ZFA:0009185
sensory processing neuron
sensory processing neurons
CL:0000381
TAO:0009186
neurosecretory neurons
zebrafish_anatomy
ZFA:0009186
neurosecretory neuron
neurosecretory neurons
CL:0000383
TAO:0009187
nephrogenic mesenchyme stem cells
zebrafish_anatomy
ZFA:0009187
nephrogenic mesenchyme stem cell
nephrogenic mesenchyme stem cells
CL:0000384
TAO:0009188
ligament cells
zebrafish_anatomy
ZFA:0009188
ligament cell
ligament cells
CL:0000388
TAO:0009189
muscle attachment cell
zebrafish_anatomy
ZFA:0009189
tendon cell
A cell whose function is determined by its response to an electric signal.
CL:0000393
TAO:0009190
electrically responsive cells
zebrafish_anatomy
ZFA:0009190
electrically responsive cell
A cell whose function is determined by its response to an electric signal.
CL:curator
electrically responsive cells
Interneuron that is part of the central nervous system.
CL:0000402
TAO:0009191
CNS interneurons
zebrafish_anatomy
ZFA:0009191
CNS interneuron
Interneuron that is part of the central nervous system.
GOC:cvs
ORCiD:0000-0002-2244-7917
CNS interneurons
true
A cell that initiates an electrical signal and passes that signal to another cell.
CL:0000404
TAO:0009193
electrically signaling cells
zebrafish_anatomy
ZFA:0009193
electrically signaling cell
A cell that initiates an electrical signal and passes that signal to another cell.
CL:curator
electrically signaling cells
CL:0000406
TAO:0009194
CNS short range interneurons
zebrafish_anatomy
ZFA:0009194
CNS short range interneuron
CNS short range interneurons
CL:0000410
TAO:0009195
CNS long range interneurons
zebrafish_anatomy
ZFA:0009195
CNS long range interneuron
CNS long range interneurons
CL:0000411
TAO:0009196
hypodermal cells
zebrafish_anatomy
ZFA:0009196
hypodermal cell
hypodermal cells
true
A pigment cell derived from the neural crest. Contains carotenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red.
ZFA:0001092
CL:0000430
TAO:0009198
zebrafish_anatomy
ZFA:0009198
xanthophore
A pigment cell derived from the neural crest. Contains carotenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red.
CL:curator
A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color.
ZFA:0001090
CL:0000431
TAO:0009199
zebrafish_anatomy
iridocyte
iridosome
ZFA:0009199
iridophore
A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color.
CL:curator
CL:0000432
TAO:0009200
reticular cells
zebrafish_anatomy
ZFA:0009200
reticular cell
reticular cells
CL:0000435
TAO:0009201
alkali secreting cells
zebrafish_anatomy
ZFA:0009201
alkali secreting cell
alkali secreting cells
CL:0000437
TAO:0009202
delta basophil
gonadotrope
gonadotroph
zebrafish_anatomy
ZFA:0009202
follicle stimulating hormone secreting cell
CL:0000438
TAO:0009203
delta basophila
gonadotrope
zebrafish_anatomy
gonadotroph
ZFA:0009203
luteinizing hormone secreting cell
An acidophilic cell of the anterior pituitary that produces prolactin.
CL:0000439
TAO:0009204
epsilon-acidophil
lactotrope
lactotroph
lactotropic cell
mammotrope
mammotroph
mammotrophic cell
mammotropic cell
zebrafish_anatomy
ZFA:0009204
prolactin secreting cell
An acidophilic cell of the anterior pituitary that produces prolactin.
CL:curator
A cell of the intermediate pituitary that produces melanocyte stimulating hormone.
CL:0000440
TAO:0009205
melanotrope
melanotroph
zebrafish_anatomy
ZFA:0009205
melanocyte stimulating hormone secreting cell
A cell of the intermediate pituitary that produces melanocyte stimulating hormone.
CL:curator
CL:0000443
TAO:0009206
calcitonin secreting cells
zebrafish_anatomy
ZFA:0009206
calcitonin secreting cell
calcitonin secreting cells
TAO:0009207
chief cell
zebrafish_anatomy
ZFA:0009207
parathyroid hormone secreting cell
true
A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation.
CL:0000451
TAO:0009209
zebrafish_anatomy
interdigitating cell
veiled cell
ZFA:0009209
dendritic cell
A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation.
ZFIN:ZDB-PUB-070221-3
CL:0000452
TAO:0009210
thyroid hormone secreting cells
zebrafish_anatomy
ZFA:0009210
thyroid hormone secreting cell
thyroid hormone secreting cells
CL:0000454
TAO:0009211
epinephrin secreting cells
zebrafish_anatomy
ZFA:0009211
epinephrin secreting cell
epinephrin secreting cells
CL:0000457
TAO:0009212
biogenic amine secreting cells
zebrafish_anatomy
ZFA:0009212
biogenic amine secreting cell
biogenic amine secreting cells
CL:0000458
TAO:0009213
serotin secreting cells
zebrafish_anatomy
ZFA:0009213
serotonin secreting cell
serotin secreting cells
A cell capable of producting norepinephrine. Norepinephrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epinephrine is synthesized from norepinephrine by the actions of the phenylethanolamine N-methyltransferase enzyme.
CL:0000459
TAO:0009214
noradrenergic cell
norepinephrin secreting cells
zebrafish_anatomy
ZFA:0009214
norepinephrine secreting cell
A cell capable of producting norepinephrine. Norepinephrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epinephrine is synthesized from norepinephrine by the actions of the phenylethanolamine N-methyltransferase enzyme.
CL:curator
norepinephrin secreting cells
CL:0000460
TAO:0009215
glucocorticoid secreting cells
zebrafish_anatomy
ZFA:0009215
glucocorticoid secreting cell
glucocorticoid secreting cells
A basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin.
CL:0000467
TAO:0009216
corticotrope
corticotroph
corticotropin hormone secreting cell
zebrafish_anatomy
adrenocorticotrophic hormone secreting cell
corticotrophin hormone secreting cell
ZFA:0009216
adrenocorticotropic hormone secreting cell
A basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin.
CL:curator
CL:0000470
TAO:0009217
digestive enzyme secreting cells
zebrafish_anatomy
ZFA:0009217
digestive enzyme secreting cell
digestive enzyme secreting cells
A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin.
CL:0000476
TAO:0009218
beta-basophil
thyrotrope
thyrotroph
zebrafish_anatomy
ZFA:0009218
thyroid stimulating hormone secreting cell
A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin.
CL:curator
CL:0000488
TAO:0009219
visible light photoreceptor cells
zebrafish_anatomy
ZFA:0009219
visible light photoreceptor cell
visible light photoreceptor cells
CL:0000490
TAO:0009220
photopic photoreceptor cells
zebrafish_anatomy
ZFA:0009220
photopic photoreceptor cell
photopic photoreceptor cells
CL:0000494
TAO:0009221
UV sensitive photoreceptor cells
zebrafish_anatomy
ZFA:0009221
UV sensitive photoreceptor cell
UV sensitive photoreceptor cells
CL:0000495
TAO:0009222
blue sensitive photoreceptor cells
zebrafish_anatomy
ZFA:0009222
blue sensitive photoreceptor cell
blue sensitive photoreceptor cells
CL:0000496
TAO:0009223
green sensitive photoreceptor cells
zebrafish_anatomy
ZFA:0009223
green sensitive photoreceptor cell
green sensitive photoreceptor cells
CL:0000497
TAO:0009224
red sensitive photoreceptor cells
zebrafish_anatomy
ZFA:0009224
red sensitive photoreceptor cell
red sensitive photoreceptor cells
CL:0000498
TAO:0009225
inhibitory interneurons
zebrafish_anatomy
ZFA:0009225
inhibitory interneuron
inhibitory interneurons
A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.
CL:0000499
TAO:0009226
stromal cells
zebrafish_anatomy
ZFA:0009226
stromal cell
A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.
CL:curator
stromal cells
A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors.
CL:0000501
TAO:0009227
granulosa cells
zebrafish_anatomy
ZFA:0009227
granulosa cell
A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors.
CL:curator
granulosa cells
A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin.
CL:0000502
TAO:0009228
D cells
zebrafish_anatomy
ZFA:0009228
D cell
A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin.
CL:curator
D cells
A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precursors of estrogens in the granulosa cells.
CL:0000503
TAO:0009229
theca cells
zebrafish_anatomy
ZFA:0009229
theca cell
A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precursors of estrogens in the granulosa cells.
CL:curator
theca cells
CL:0000505
TAO:0009230
substance P secreting cells
zebrafish_anatomy
ZFA:0009230
substance P secreting cell
substance P secreting cells
CL:0000506
TAO:0009231
enkephalin secreting cells
zebrafish_anatomy
ZFA:0009231
enkephalin secreting cell
enkephalin secreting cells
CL:0000507
TAO:0009232
endorphin secreting cells
zebrafish_anatomy
ZFA:0009232
endorphin secreting cell
endorphin secreting cells
CL:0000512
TAO:0009233
paracrine cells
zebrafish_anatomy
ZFA:0009233
paracrine cell
paracrine cells
A precursor cell destined to differentiate into cardiac myocytes.
CL:0000513
TAO:0009234
zebrafish_anatomy
cardioblast
ZFA:0009234
cardiac muscle myoblast
A precursor cell destined to differentiate into cardiac myocytes.
CL:curator
A precursor cell destined to differentiate into smooth muscle myocytes.
CL:0000514
TAO:0009235
zebrafish_anatomy
satellite cell
ZFA:0009235
smooth muscle myoblast
A precursor cell destined to differentiate into smooth muscle myocytes.
CL:curator
A myoblast that differentiates into skeletal muscle fibers.
CL:0000515
TAO:0009236
skeletal muscle myoblasts
zebrafish_anatomy
ZFA:0009236
skeletal muscle myoblast
A myoblast that differentiates into skeletal muscle fibers.
CL:curator
skeletal muscle myoblasts
A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia.
CL:0000516
TAO:0009237
perineural satellite cell
zebrafish_anatomy
ZFA:0009237
perineuronal satellite cell
A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia.
CL:curator
A neuron which conveys sensory information centrally from the periphery.
CL:0000526
TAO:0009238
input neuron
zebrafish_anatomy
ZFA:0009238
afferent neuron
A neuron which conveys sensory information centrally from the periphery.
CL:curator
A neuron which sends impulses peripherally to activate muscles or secretory cells.
CL:0000527
TAO:0009239
output neuron
zebrafish_anatomy
ZFA:0009239
efferent neuron
A neuron which sends impulses peripherally to activate muscles or secretory cells.
CL:curator
A nerve cell where transmission is mediated by nitric oxide.
CL:0000528
TAO:0009240
nitrergic neurons
zebrafish_anatomy
ZFA:0009240
nitrergic neuron
A nerve cell where transmission is mediated by nitric oxide.
CL:curator
nitrergic neurons
CL:0000529
TAO:0009241
pigmented epithelial cells
zebrafish_anatomy
ZFA:0009241
pigmented epithelial cell
pigmented epithelial cells
ZFA:0000055
CL:0000530
TAO:0009242
zebrafish_anatomy
ZFA:0009242
primary neuron
A primary motor neuron part of the spinal cord. The CaP motoneuron is found within 1 soma diameter of the ventral root. The axon of the CaP motoneuron extends ventrally from the ventral root, within the space between the notochord and the medial surface of the axial muscles. Below the notochord, the axon extends within the ventral median septum to the ventral edge of the axial muscles, where it turns dorsally and laterally to project over the lateral surface of the axial muscles.
CL:0000532
TAO:0009243
CAP motoneurons
caudal primary motoneuron
zebrafish_anatomy
ZFA:0009243
CaP motoneuron
A primary motor neuron part of the spinal cord. The CaP motoneuron is found within 1 soma diameter of the ventral root. The axon of the CaP motoneuron extends ventrally from the ventral root, within the space between the notochord and the medial surface of the axial muscles. Below the notochord, the axon extends within the ventral median septum to the ventral edge of the axial muscles, where it turns dorsally and laterally to project over the lateral surface of the axial muscles.
ZFIN:ZDB-PUB-961014-272
ZFIN:ZDB-PUB-961014-649
ZFIN:ZDB-PUB-961014-814
CAP motoneurons
Motor neurons that arise during the first day of development. Primary motoneurons have larger diameter cell bodies and axons than secondary motoneurons and are positioned more dorsally and medially than secondary motoneurons. Primary motoneurons are present in a single bilateral pair of clusters in each spinal segment and innervate axial muscle fibers in the corresponding pair of myotomes. Axons make a conspicuous loop around the Mauthner axon before entering the ventral root.
ZFA:0000572
CL:0000533
TAO:0009244
primary motoneuron
zebrafish_anatomy
ZFA:0009244
primary motor neuron
Motor neurons that arise during the first day of development. Primary motoneurons have larger diameter cell bodies and axons than secondary motoneurons and are positioned more dorsally and medially than secondary motoneurons. Primary motoneurons are present in a single bilateral pair of clusters in each spinal segment and innervate axial muscle fibers in the corresponding pair of myotomes. Axons make a conspicuous loop around the Mauthner axon before entering the ventral root.
ISBN:0471530506
ZFA:0000945
CL:0000534
TAO:0009245
zebrafish_anatomy
ZFA:0009245
primary interneuron
CL:0000535
TAO:0009246
secondary neurons
zebrafish_anatomy
ZFA:0009246
secondary neuron
secondary neurons
Motor neurons that develop several hours later than primary motoneurons and sprout axons several hours after the primary motor growth cones have extended to the periphery. They have smaller cell bodies and are located more ventrally and laterally in the spinal cord than primary motoneurons. Axons usually project directly out of the spinal cord with no apparent contact with the Mauthner axon and are positioned lateral to the Mauthner axon in their path to the ventral root. Secondary motoneurons have smaller fields, which can overlap one another, and innervate many fewer muscle fibers than primary motoneurons.
ZFA:0000584
CL:0000536
TAO:0009247
secondary motoneuron
zebrafish_anatomy
ZFA:0009247
secondary motor neuron
Motor neurons that develop several hours later than primary motoneurons and sprout axons several hours after the primary motor growth cones have extended to the periphery. They have smaller cell bodies and are located more ventrally and laterally in the spinal cord than primary motoneurons. Axons usually project directly out of the spinal cord with no apparent contact with the Mauthner axon and are positioned lateral to the Mauthner axon in their path to the ventral root. Secondary motoneurons have smaller fields, which can overlap one another, and innervate many fewer muscle fibers than primary motoneurons.
ISBN:0471530506
ZFIN:ZDB-PUB-961014-1247
The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
ZFA:0000134
CL:0000540
TAO:0009248
zebrafish_anatomy
ZFA:0009248
neuron
The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
CL:curator
A cell that originates from the neural crest and differentiates into a pigment cell.
CL:0000541
TAO:0009249
melanoblasts
zebrafish_anatomy
ZFA:0009249
melanoblast
A cell that originates from the neural crest and differentiates into a pigment cell.
CL:curator
melanoblasts
A cell of the B cell, T cell, or natural killer cell lineage.
CL:0000542
TAO:0009250
lymphocytes
zebrafish_anatomy
ZFA:0009250
lymphocyte
A cell of the B cell, T cell, or natural killer cell lineage.
ZFIN:ZDB-PUB-070221-3
lymphocytes
A progenitor cell committed to the granulocyte and monocyte lineages.
CL:0000557
TAO:0009251
GMP
colony forming unit granulocyte macrophage
granulocyte-macrophage progenitor
zebrafish_anatomy
CFU-C , Colony forming unit in culture
ZFA:0009251
granulocyte monocyte progenitor cell
A progenitor cell committed to the granulocyte and monocyte lineages.
ZFIN:ZDB-PUB-070221-1
http://www.copewithcytokines.de
GMP
ZFIN:ZDB-PUB-070221-1
colony forming unit granulocyte macrophage
ZFIN:ZDB-PUB-070221-1
granulocyte-macrophage progenitor
ZFIN:ZDB-PUB-070221-1
An immature erythrocyte showing a basophilic reticulum under vital staining.
CL:0000558
TAO:0009252
reticulocytes
zebrafish_anatomy
ZFA:0009252
reticulocyte
An immature erythrocyte showing a basophilic reticulum under vital staining.
ZFIN:ZDB-PUB-070221-1
reticulocytes
A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte.
CL:0000559
TAO:0009253
promonocytes
zebrafish_anatomy
ZFA:0009253
promonocyte
A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte.
ZFIN:ZDB-PUB-070221-1
promonocytes
A late neutrophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil.
CL:0000560
TAO:0009254
band cell
band form
rod neutrophil
stab cell
zebrafish_anatomy
band
ZFA:0009254
band form neutrophil
A late neutrophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil.
ZFIN:ZDB-PUB-070221-1
Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer.
CL:0000561
TAO:0009255
amacrine neuron
zebrafish_anatomy
ZFA:0009255
amacrine cell
Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer.
CL:curator
An erythrocyte having a nucleus.
CL:0000562
TAO:0009256
RBC
red blood cell
zebrafish_anatomy
ZFA:0009256
nucleate erythrocyte
An erythrocyte having a nucleus.
CL:curator
A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, and containing a few, as yet undifferentiated, cytoplasmic granules.
CL:0000564
TAO:0009257
neutrophilic premyelocyte
neutrophilic progranulocyte
promyelocyte
zebrafish_anatomy
ZFA:0009257
neutrophilic promyelocyte
A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, and containing a few, as yet undifferentiated, cytoplasmic granules.
ZFIN:ZDB-PUB-070221-1
CL:0000566
TAO:0009258
angioblast
zebrafish_anatomy
ZFA:0009258
angioblastic mesenchymal cell
A mesenchymal cell found in the developing heart.
CL:0000569
TAO:0009259
cardiac mesenchymal cells
zebrafish_anatomy
ZFA:0009259
cardiac mesenchymal cell
A mesenchymal cell found in the developing heart.
PMID:18816864
cardiac mesenchymal cells
CL:0000570
TAO:0009260
C cell
zebrafish_anatomy
ZFA:0009260
parafollicular cell
A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light. These cells express purine nucleoside phosphorylase 4a.
CL:0000571
TAO:0009261
zebrafish_anatomy
guaninophores
guanophore
ZFA:0009261
leucophore
A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light. These cells express purine nucleoside phosphorylase 4a.
CL:curator
guanophore
PMID:16588565
One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.
CL:0000573
TAO:0009262
retinal cone cells
zebrafish_anatomy
ZFA:0009262
retinal cone cell
One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.
CL:curator
retinal cone cells
A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance.
CL:0000574
TAO:0009263
erythrophores
zebrafish_anatomy
ZFA:0009263
erythrophore
A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance.
CL:curator
erythrophores
CL:0000575
TAO:0009264
corneal epithelial cells
zebrafish_anatomy
ZFA:0009264
corneal epithelial cell
corneal epithelial cells
Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells.
CL:0000576
TAO:0009265
monocytes
zebrafish_anatomy
ZFA:0009265
monocyte
Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells.
CL:curator
monocytes
A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, differentiation of cytoplasmic granules has begun.
CL:0000580
TAO:0009266
neutrophilic myelocytes
zebrafish_anatomy
ZFA:0009266
neutrophilic myelocyte
A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, differentiation of cytoplasmic granules has begun.
ZFIN:ZDB-PUB-070221-1
neutrophilic myelocytes
A macrophage resident in the peritoneum under non-inlfammatory conditions.
CL:0000581
TAO:0009267
peritoneal macrophages
zebrafish_anatomy
ZFA:0009267
peritoneal macrophage
A macrophage resident in the peritoneum under non-inlfammatory conditions.
CL:curator
peritoneal macrophages
A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented and its chromatin becomes coarse and clumped; and the cytoplasm becomes pink like that of a mature granulocyte.
CL:0000582
TAO:0009268
juvenile neutrophil
zebrafish_anatomy
ZFA:0009268
neutrophilic metamyelocyte
A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented and its chromatin becomes coarse and clumped; and the cytoplasm becomes pink like that of a mature granulocyte.
ZFIN:ZDB-PUB-070221-1
An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen.
CL:0000584
TAO:0009269
enterocytes
zebrafish_anatomy
ZFA:0009269
enterocyte
An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen.
SANBI:curator
enterocytes
A specialized osteoclast associated with the absorption and removal of cementum.
CL:0000588
TAO:0009270
odontoclasts
zebrafish_anatomy
ZFA:0009270
odontoclast
A specialized osteoclast associated with the absorption and removal of cementum.
CL:curator
odontoclasts
CL:0000593
TAO:0009271
androgen secreting cells
zebrafish_anatomy
ZFA:0009271
androgen secreting cell
androgen secreting cells
An elongated, spindle-shaped, quiescent myoblast lying in close contact with adult skeletal muscle. They are thought to play a role in muscle repair and regeneration.
CL:0000594
TAO:0009272
skeletal muscle satellite cells
zebrafish_anatomy
ZFA:0009272
skeletal muscle satellite cell
An elongated, spindle-shaped, quiescent myoblast lying in close contact with adult skeletal muscle. They are thought to play a role in muscle repair and regeneration.
CL:curator
skeletal muscle satellite cells
A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region.
CL:0000598
TAO:0009273
pyramidal cells
zebrafish_anatomy
ZFA:0009273
pyramidal cell
A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region.
CL:curator
pyramidal cells
A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls.
CL:0000602
TAO:0009274
pressoreceptor cells
zebrafish_anatomy
ZFA:0009274
pressoreceptor cell
A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls.
CL:curator
pressoreceptor cells
One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.
CL:0000604
TAO:0009275
retinal rod cells
zebrafish_anatomy
ZFA:0009275
retinal rod cell
One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.
CL:curator
retinal rod cells
A neuron that uses GABA as a vesicular neurotransmitter.
CL:0000617
TAO:0009276
GABAergic neurons
zebrafish_anatomy
ZFA:0009276
GABAergic neuron
A neuron that uses GABA as a vesicular neurotransmitter.
GOC:tfm
GABAergic neurons
A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).
CL:0000622
TAO:0009277
acinar cells
zebrafish_anatomy
ZFA:0009277
acinar cell
A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).
GOC:tfm
acinar cells
A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells.
CL:0000623
TAO:0009278
NK cell
zebrafish_anatomy
large granular lymphocyte
null cell
ZFA:0009278
natural killer cell
A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells.
ZFIN:ZDB-PUB-070221-3
A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype.
CL:0000632
TAO:0009279
hepatic stellate cell
perisinusoidal cell
zebrafish_anatomy
ZFA:0009279
ito cell
A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype.
GOC:tm
Glial cell of the retina that forms a support structure stretching radially across the thickness of the retina. Muller cell bodies are found in the inner nuclear layer and send projection to the outer limiting membrane and inner limiting membrane.
CL:0000636
TAO:0009280
Mueller cell
Muller cells
zebrafish_anatomy
ZFA:0009280
Muller cell
Glial cell of the retina that forms a support structure stretching radially across the thickness of the retina. Muller cell bodies are found in the inner nuclear layer and send projection to the outer limiting membrane and inner limiting membrane.
GOC:cvs
GOC:ymb
ORCiD:0000-0002-2244-7917
ORCiD:0000-0002-9900-7880
http://webvision.med.utah.edu/book/part-ii-anatomy-and-physiology-of-the-retina/glial-cells-of-the-retina/
Mueller cell
ZFIN:ZDB-PUB-150220-2
Muller cells
A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones.
CL:0000642
TAO:0009281
folliculostellate cells
zebrafish_anatomy
ZFA:0009281
folliculostellate cell
A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones.
CL:curator
folliculostellate cells
CL:0000644
TAO:0009282
Bergmann glial cells
zebrafish_anatomy
ZFA:0009282
Bergmann glial cell
Bergmann glial cells
CL:0000650
TAO:0009283
mesangial cells
zebrafish_anatomy
ZFA:0009283
mesangial cell
mesangial cells
CL:0000652
TAO:0009284
pinealocytes
zebrafish_anatomy
ZFA:0009284
pinealocyte
pinealocytes
CL:0000653
TAO:0009285
podocytes
zebrafish_anatomy
ZFA:0009285
podocyte
podocytes
CL:0000666
TAO:0009286
window cell
zebrafish_anatomy
ZFA:0009286
fenestrated cell
CL:0000667
TAO:0009287
collagen secreting cells
zebrafish_anatomy
ZFA:0009287
collagen secreting cell
collagen secreting cells
A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.
ZFA:0000065
CL:0000670
TAO:0009288
PGC
zebrafish_anatomy
ZFA:0009288
primordial germ cell
A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.
CL:curator
Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules.
CL:0000677
TAO:0009289
gut absorptive cells
zebrafish_anatomy
ZFA:0009289
gut absorptive cell
Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules.
CL:curator
gut absorptive cells
CL:0000679
TAO:0009290
glutamatergic neurons
zebrafish_anatomy
ZFA:0009290
glutamatergic neuron
glutamatergic neurons
CL:0000680
TAO:0009291
muscle precursor cells
zebrafish_anatomy
ZFA:0009291
muscle precursor cell
muscle precursor cells
A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration.
CL:0000681
TAO:0009292
radial glial cells
zebrafish_anatomy
ZFA:0009292
radial glial cell
A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration.
CL:curator
radial glial cells
An absorptive cell of the mammalian gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes.
CL:0000682
TAO:0009293
M cells
zebrafish_anatomy
ZFA:0009293
M cell
An absorptive cell of the mammalian gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes.
CL:curator
M cells
A cell that transports hormones from neurosecretory cells.
CL:0000683
TAO:0009294
ependymoglial cells
zebrafish_anatomy
ZFA:0009294
ependymoglial cell
A cell that transports hormones from neurosecretory cells.
CL:curator
ependymoglial cells
CL:0000686
TAO:0009295
cerebrospinal fluid secreting cells
zebrafish_anatomy
ZFA:0009295
cerebrospinal fluid secreting cell
cerebrospinal fluid secreting cells
A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina.
CL:0000688
TAO:0009296
perijunctional fibroblasts
zebrafish_anatomy
ZFA:0009296
perijunctional fibroblast
A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina.
CL:curator
perijunctional fibroblasts
CL:0000691
TAO:0009297
stellate interneurons
zebrafish_anatomy
ZFA:0009297
stellate interneuron
stellate interneurons
A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse.
CL:0000692
TAO:0009298
terminal Schwann cells
zebrafish_anatomy
ZFA:0009298
terminal Schwann cell
A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse.
CL:curator
terminal Schwann cells
A stellate interneuron having 7-10 dendrites that may branch.
CL:0000693
TAO:0009299
spiderweb cell
zebrafish_anatomy
ZFA:0009299
neuroglioform cell
A stellate interneuron having 7-10 dendrites that may branch.
CL:curator
One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene.
CL:0000695
TAO:0009300
Cajal-Retzius cells
zebrafish_anatomy
ZFA:0009300
Cajal-Retzius cell
One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene.
CL:curator
Cajal-Retzius cells
A neuron that releases dopamine as a neurotransmitter.
CL:0000700
TAO:0009301
dopaminergic neurons
zebrafish_anatomy
ZFA:0009301
dopaminergic neuron
A neuron that releases dopamine as a neurotransmitter.
CL:dhill
dopaminergic neurons
Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors.
CL:0000703
TAO:0009302
sustentacular cells
zebrafish_anatomy
ZFA:0009302
sustentacular cell
Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors.
CL:curator
sustentacular cells
A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels.
CL:0000704
TAO:0009303
endothelial tip cells
zebrafish_anatomy
ZFA:0009303
endothelial tip cell
A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels.
CL:curator
endothelial tip cells
Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord.
CL:0000706
TAO:0009304
choroid plexus epithelial cells
zebrafish_anatomy
ZFA:0009304
choroid plexus epithelial cell
Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord.
CL:curator
choroid plexus epithelial cells
Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus.
CL:0000708
TAO:0009305
leptomeningeal cells
zebrafish_anatomy
leptomemingeal cell
ZFA:0009305
leptomeningeal cell
Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus.
CL:curator
leptomeningeal cells
CL:0000710
TAO:0009306
neuroepithelial cells
zebrafish_anatomy
ZFA:0009306
neuroepithelial cell
neuroepithelial cells
A stem cell that can give rise to cell types of the body other than those of the germ-line.
CL:0000723
TAO:0009307
somatic stem cells
zebrafish_anatomy
ZFA:0009307
Definition originally referred to GO:0048103. Changed to GOC: CJM to match other references.
somatic stem cell
A stem cell that can give rise to cell types of the body other than those of the germ-line.
GO:cjm
somatic stem cells
A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria.
CL:0000731
TAO:0009308
urothelial cells
zebrafish_anatomy
ZFA:0009308
urothelial cell
A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria.
CL:curator
urothelial cells
An achromatic cell of the myeloid or lymphoid lineages, found in blood or other tissue.
CL:0000738
TAO:0009309
immune cell
leucocyte
white blood cell
zebrafish_anatomy
ZFA:0009309
leukocyte
An achromatic cell of the myeloid or lymphoid lineages, found in blood or other tissue.
CL:curator
The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.
CL:0000740
TAO:0009310
RGC
gangliocyte
zebrafish_anatomy
ZFA:0009310
retinal ganglion cell
The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.
CL:curator
A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord.
CL:0000741
TAO:0009311
SACMN
zebrafish_anatomy
ZFA:0009311
spinal accessory motor neuron
A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord.
CL:curator
A round chondrocyte that first differentiates in the late embryonic growth plate of bone.
CL:0000742
TAO:0009312
periarticular chondrocytes
zebrafish_anatomy
ZFA:0009312
periarticular chondrocyte
A round chondrocyte that first differentiates in the late embryonic growth plate of bone.
CL:curator
periarticular chondrocytes
A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone.
CL:0000743
TAO:0009313
hypertrophic chondrocytes
zebrafish_anatomy
ZFA:0009313
hypertrophic chondrocyte
A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone.
CL:curator
hypertrophic chondrocytes
A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate.
CL:0000744
TAO:0009314
columnar chondrocytes
zebrafish_anatomy
ZFA:0009314
columnar chondrocyte
A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate.
CL:curator
columnar chondrocytes
A neuron that laterally connects other neurons in the inner nuclear layer of the retina.
CL:0000745
TAO:0009315
horizontal cells
zebrafish_anatomy
ZFA:0009315
horizontal cell
A neuron that laterally connects other neurons in the inner nuclear layer of the retina.
ZFIN:ZDB-PUB-070221-6
horizontal cells
CL:0000746
TAO:0009316
cardiac muscle cells
cardiac myocyte
cardiomyocyte
zebrafish_anatomy
ZFA:0009316
cardiac muscle cell
cardiac muscle cells
A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance.
CL:0000747
TAO:0009317
blue chromatophore
zebrafish_anatomy
ZFA:0009317
cyanophore
A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance.
CL:curator
A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer.
CL:0000748
TAO:0009318
zebrafish_anatomy
ZFA:0009318
retinal bipolar neuron
A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer.
CL:curator
A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors.
CL:0000749
TAO:0009319
ON-bipolar cells
zebrafish_anatomy
ZFA:0009319
ON-bipolar cell
A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors.
CL:curator
ON-bipolar cells
A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors.
CL:0000750
TAO:0009320
OFF-bipolar cells
zebrafish_anatomy
ZFA:0009320
OFF-bipolar cell
A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors.
CL:curator
OFF-bipolar cells
A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer.
CL:0000751
TAO:0009321
rod bipolar cells
zebrafish_anatomy
ZFA:0009321
rod bipolar cell
A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer.
CL:curator
rod bipolar cells
A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer.
CL:0000752
TAO:0009322
cone retinal bipolar cells
zebrafish_anatomy
ZFA:0009322
cone retinal bipolar cell
A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer.
CL:curator
cone retinal bipolar cells
A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates.
CL:0000762
TAO:0009323
thrombocytes
zebrafish_anatomy
ZFA:0009323
Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals.
thrombocyte
A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates.
CL:curator
thrombocytes
A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.
CL:0000763
TAO:0009324
myeloid cells
zebrafish_anatomy
ZFA:0009324
myeloid cell
A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.
CL:curator
myeloid cells
A immature or mature cell in the lineage leading to and including erythrocytes.
CL:0000764
TAO:0009325
erythroid lineage cells
zebrafish_anatomy
ZFA:0009325
erythroid lineage cell
A immature or mature cell in the lineage leading to and including erythrocytes.
CL:curator
erythroid lineage cells
A cell of the monocyte, granulocyte, or mast cell lineage.
CL:0000766
TAO:0009326
myeloid leukocytes
zebrafish_anatomy
ZFA:0009326
myeloid leukocyte
A cell of the monocyte, granulocyte, or mast cell lineage.
CL:curator
myeloid leukocytes
Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.
CL:0000775
TAO:0009327
neutrocyte
neutrophil leucocyte
neutrophil leukocyte
neutrophilic leucocyte
neutrophilic leukocyte
zebrafish_anatomy
PMN
polymorphonuclear leucocyte
polymorphonuclear leukocyte
polymorphonuclear neutrophil
polynuclear neutrophilic leucocyte
polynuclear neutrophilic leukocyte
ZFA:0009327
neutrophil
Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.
ZFIN:ZDB-PUB-070221-1
Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. A neutrophil is a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.
CL:0000776
TAO:0009328
immature neutrocyte
immature neutrophil leucocyte
immature neutrophil leukocyte
immature neutrophilic leucocyte
zebrafish_anatomy
ZFA:0009328
immature neutrophil
Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. A neutrophil is a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.
ZFIN:ZDB-PUB-070221-1
A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts.
CL:0000778
TAO:0009329
mononuclear osteoclasts
zebrafish_anatomy
ZFA:0009329
mononuclear osteoclast
A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts.
CL:curator
mononuclear osteoclasts
A specialized mononuclear osteoclast associated with the absorption and removal of cementum.
CL:0000781
TAO:0009330
mononuclear odontoclasts
zebrafish_anatomy
ZFA:0009330
mononuclear odontoclast
A specialized mononuclear osteoclast associated with the absorption and removal of cementum.
CL:curator
mononuclear odontoclasts
A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen.
CL:0000785
TAO:0009331
mature B lymphocyte
mature B-cell
mature B-lymphocyte
zebrafish_anatomy
ZFA:0009331
mature B cell
A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen.
ZFIN:ZDB-PUB-070221-3
A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin.
CL:0000786
TAO:0009332
plasmacyte
zebrafish_anatomy
ZFA:0009332
plasma cell
A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin.
ZFIN:ZDB-PUB-070221-1
ZFIN:ZDB-PUB-070221-3
A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative.
CL:0000787
TAO:0009333
memory B lymphocyte
memory B-cell
memory B-lymphocyte
zebrafish_anatomy
ZFA:0009333
memory B cell
A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative.
ZFIN:ZDB-PUB-070221-3
A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD27-negative, and CD38-negative, and that has not yet been activated by antigen in the periphery.
CL:0000788
TAO:0009334
naive B lymphocyte
naive B-cell
naive B-lymphocyte
zebrafish_anatomy
ZFA:0009334
naive B cell
A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD27-negative, and CD38-negative, and that has not yet been activated by antigen in the periphery.
CL:curator
IBSN:0781765196
A T cell that expresses an alpha-beta T cell receptor complex.
CL:0000789
TAO:0009335
alpha-beta T lymphocyte
alpha-beta T-cell
alpha-beta T-lymphocyte
zebrafish_anatomy
ZFA:0009335
alpha-beta T cell
A T cell that expresses an alpha-beta T cell receptor complex.
ZFIN:ZDB-PUB-070221-3
A T cell that expresses a gamma-delta T cell receptor complex.
CL:0000798
TAO:0009336
gamma-delta T lymphocyte
gamma-delta T-cell
gamma-delta T-lymphocyte
zebrafish_anatomy
ZFA:0009336
Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways.
gamma-delta T cell
A T cell that expresses a gamma-delta T cell receptor complex.
ZFIN:ZDB-PUB-070221-3
A gamma-delta T cell that has an immature phenotype.
CL:0000799
TAO:0009337
immature gamma-delta T lymphocyte
immature gamma-delta T-cell
immature gamma-delta T-lymphocyte
zebrafish_anatomy
ZFA:0009337
Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways.
immature gamma-delta T cell
A gamma-delta T cell that has an immature phenotype.
ZFIN:ZDB-PUB-070221-3
A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location.
CL:0000800
TAO:0009338
mature gamma-delta T lymphocyte
mature gamma-delta T-cell
mature gamma-delta T-lymphocyte
zebrafish_anatomy
ZFA:0009338
mature gamma-delta T cell
A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location.
ZFIN:ZDB-PUB-070221-3
A gamma-delta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements.
CL:0000801
TAO:0009339
gamma-delta intraepithelial T lymphocyte
gamma-delta intraepithelial T-cell
gamma-delta intraepithelial T-lymphocyte
zebrafish_anatomy
IEL
intraepithelial lymphocyte
ZFA:0009339
gamma-delta intraepithelial T cell
A gamma-delta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements.
ZFIN:ZDB-PUB-070221-3
true
true
A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive.
CL:0000813
TAO:0009342
memory T lymphocyte
memory T-cell
memory T-lymphocyte
zebrafish_anatomy
ZFA:0009342
memory T cell
A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive.
ZFIN:ZDB-PUB-070221-3
An immature B cell is a precursor B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation.
CL:0000816
TAO:0009343
immature B lymphocyte
immature B-cell
immature B-lymphocyte
newly formed B Cell
zebrafish_anatomy
ZFA:0009343
immature B cell
An immature B cell is a precursor B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation.
ZFIN:ZDB-PUB-070221-3
newly formed B Cell
ZFIN:ZDB-PUB-070221-3
A precursor B cell is a B cell with the phenotype CD10-positive.
CL:0000817
TAO:0009344
pre-B lymphocyte
zebrafish_anatomy
ZFA:0009344
precursor B cell
A precursor B cell is a B cell with the phenotype CD10-positive.
ZFIN:ZDB-PUB-070221-3
An immature B cell of an intermediate stage between the pre-B cell stage and the mature nave stage. Transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection.
CL:0000818
TAO:0009345
transitional stage B lymphocyte
transitional stage B-cell
transitional stage B-lymphocyte
zebrafish_anatomy
T1 B cell
T2 B cell
T3 B cell
ZFA:0009345
transitional stage B cell
An immature B cell of an intermediate stage between the pre-B cell stage and the mature nave stage. Transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection.
ZFIN:ZDB-PUB-070221-3
A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD117-positive, CD122-positive, and CD161-positive, and expresses additional natural killer cell receptors (NKR).
CL:0000823
TAO:0009346
immature NK cell
zebrafish_anatomy
p-NK
ZFA:0009346
immature natural killer cell
A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD117-positive, CD122-positive, and CD161-positive, and expresses additional natural killer cell receptors (NKR).
ZFIN:ZDB-PUB-070221-3
A natural killer cell that is developmentally mature, has the phenotype CD16-positive, and expresses a variety of inhibitory and activating receptors that recognize NHC class I and other stress related molecules.
CL:0000824
TAO:0009347
mature NK cell
zebrafish_anatomy
LAK cell
lymphokine activated killer cell
ZFA:0009347
mature natural killer cell
A natural killer cell that is developmentally mature, has the phenotype CD16-positive, and expresses a variety of inhibitory and activating receptors that recognize NHC class I and other stress related molecules.
ZFIN:ZDB-PUB-070221-3
A progenitor committed to the natural killer cell lineage, expressing certain phenotypic markers of the natural killer cell lineage such as the IL-15 receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules.
CL:0000825
TAO:0009348
NKP
natural killer cell progenitor
pro-natural killer cell
zebrafish_anatomy
null cell
preNK cell
ZFA:0009348
pro-NK cell
A progenitor committed to the natural killer cell lineage, expressing certain phenotypic markers of the natural killer cell lineage such as the IL-15 receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules.
CL:curator
A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs.
CL:0000826
TAO:0009349
pro-B lymphocyte
pro-B-cell
pro-B-lymphocyte
progenitor B cell
zebrafish_anatomy
ZFA:0009349
pro-B cell
A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs.
ZFIN:ZDB-PUB-070221-3
A progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage.
CL:0000827
TAO:0009350
pro-T lymphocyte
zebrafish_anatomy
DN1 cell
DN1 thymocyte
TN1 cell
ZFA:0009350
pro-T cell
A progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage.
ZFIN:ZDB-PUB-070221-3
A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates.
CL:0000828
TAO:0009351
thromboblasts
zebrafish_anatomy
ZFA:0009351
Note that this is a non-mammalian cell type.
thromboblast
A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates.
CL:curator
thromboblasts
A progenitor cell of the neutrophil lineage.
CL:0000834
TAO:0009352
zebrafish_anatomy
neutrophil stem cell
ZFA:0009352
neutrophil progenitor cell
A progenitor cell of the neutrophil lineage.
ZFIN:ZDB-PUB-070221-1
The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm.
CL:0000835
TAO:0009353
myeloblasts
zebrafish_anatomy
ZFA:0009353
myeloblast
The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm.
ZFIN:ZDB-PUB-070221-1
myeloblasts
A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans.
CL:0000837
TAO:0009354
hematopoietic progenitor cell
hemopoietic progenitor cell
zebrafish_anatomy
ZFA:0009354
Note that this is a class of cell types, not an identified single cell type.
hematopoietic multipotent progenitor cell
A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans.
CL:curator
PMID:19022770
A progenitor cell restricted to the lymphoid lineage.
CL:0000838
TAO:0009355
lymphoid progenitor cells
zebrafish_anatomy
ZFA:0009355
Note that this is a class of cell types, not an identified single cell type.
lymphoid progenitor cell
A progenitor cell restricted to the lymphoid lineage.
CL:curator
PMID:19022770
lymphoid progenitor cells
A progenitor cell restricted to the myeloid lineage.
CL:0000839
TAO:0009356
myeloid progenitor cells
zebrafish_anatomy
myeloid progenitor cell
ZFA:0009356
Note that this is a class of cell types, not an identified single cell type.
myeloid lineage restricted progenitor cell
A progenitor cell restricted to the myeloid lineage.
CL:curator
PMID:19022770
myeloid progenitor cells
A leukocyte with a single non-segmented nucleus in the mature form.
CL:0000842
TAO:0009357
mononuclear cells
zebrafish_anatomy
ZFA:0009357
mononuclear cell
A leukocyte with a single non-segmented nucleus in the mature form.
CL:curator
mononuclear cells
An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob. The soma is located basally in the olfactory epithelium.
CL:0000847
TAO:0009358
ciliated olfactory sensory neuron
ciliated sensory neuron
zebrafish_anatomy
ZFA:0009358
ciliated olfactory receptor neuron
An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob. The soma is located basally in the olfactory epithelium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060724-7
ZFIN:ZDB-PUB-140416-5
An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli. The cell body is plump and the soma is at an intermediate position in the olfactory epithelium.
CL:0000848
TAO:0009359
microvillous olfactory sensory neuron
zebrafish_anatomy
microvillous sensory neuron
ZFA:0009359
microvillous olfactory receptor neuron
An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli. The cell body is plump and the soma is at an intermediate position in the olfactory epithelium.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060724-7
ZFIN:ZDB-PUB-140416-5
An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli. The soma is large and globose located in the apical region of the olfactory epithelium. The axons project to a single glomerulus mdG2.
CL:0000849
TAO:0009360
crypt cell
crypt olfactory sensory neuron
crypt sensory neuron
zebrafish_anatomy
ZFA:0009360
crypt olfactory receptor neuron
An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli. The soma is large and globose located in the apical region of the olfactory epithelium. The axons project to a single glomerulus mdG2.
GOC:cvs
ORCiD:0000-0002-2244-7917
ZFIN:ZDB-PUB-060724-7
ZFIN:ZDB-PUB-130710-55
ZFIN:ZDB-PUB-140416-5
A neuron that releases serotonin as a neurotransmitter.
ZFA:0009192
CL:0000850
TAO:0009192
TAO:0009361
5-HT neuron
5-hydroxytryptamine neuron
zebrafish_anatomy
serotinergic neuron
serotinergic neurons
ZFA:0009361
Has alternate ID CL:0000403.
serotonergic neuron
A neuron that releases serotonin as a neurotransmitter.
CL:curator
Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded.
CL:0000851
TAO:0009362
neuromast mantle cells
zebrafish_anatomy
ZFA:0009362
neuromast mantle cell
Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded.
ZFIN:ZDB-PUB-070221-7
neuromast mantle cells
Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells.
CL:0000852
TAO:0009363
neuromast support cells
zebrafish_anatomy
ZFA:0009363
neuromast support cell
Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells.
ZFIN:ZDB-PUB-070221-7
neuromast support cells
Olfactory epithelial support cell is a non ciliated columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium.
CL:0000853
TAO:0009364
olfactory sustentacular cell
zebrafish_anatomy
ZFA:0009364
olfactory epithelial support cell
Olfactory epithelial support cell is a non ciliated columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium.
CL:curator
Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts.
CL:0000854
TAO:0009365
interneuromast cells
zebrafish_anatomy
ZFA:0009365
interneuromast cell
Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts.
CL:curator
interneuromast cells
Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.
CL:0000855
TAO:0009366
hair cells
zebrafish_anatomy
ZFA:0009366
hair cell
Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.
CL:curator
hair cells
Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface.
CL:0000856
TAO:0009367
neuromast hair cells
zebrafish_anatomy
ZFA:0009367
neuromast hair cell
Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface.
CL:curator
neuromast hair cells
A skeletal muscle myoblast that differentiates into slow muscle fibers.
CL:0000857
TAO:0009368
slow muscle myoblasts
zebrafish_anatomy
ZFA:0009368
slow muscle myoblast
A skeletal muscle myoblast that differentiates into slow muscle fibers.
CL:curator
slow muscle myoblasts
A skeletal muscle myoblast that differentiates into fast muscle fibers.
CL:0000858
TAO:0009369
fast muscle myoblasts
zebrafish_anatomy
ZFA:0009369
fast muscle myoblast
A skeletal muscle myoblast that differentiates into fast muscle fibers.
CL:curator
fast muscle myoblasts
CL:1000082
TAO:0009370
stretch receptor cells
zebrafish_anatomy
ZFA:0009370
stretch receptor cell
stretch receptor cells
CL:1000083
TAO:0009371
stratified keratinized epithelial stem cells
zebrafish_anatomy
ZFA:0009371
stratified keratinized epithelial stem cell
stratified keratinized epithelial stem cells
Epithelial cell part of duct.
Ceri
2013-07-29T05:17:20Z
CL:0000068
zebrafish_anatomy
ZFA:0009372
Definition not present in CL.
duct epithelial cell
Epithelial cell part of duct.
GOC:cvs
ORCiD:0000-0002-2244-7917
true
An epithelial cell of the kidney.
CL:0002518
zebrafish_anatomy
ZFA:0009374
kidney epithelial cell
An epithelial cell of the kidney.
GOC:tfm
KUPO:SJ
A cuboidal epithelial cell of the kidney that regulates acid/base balance.
Ceri
2013-03-06T01:42:07Z
CL:0005010
intercalated cell
zebrafish_anatomy
ZFA:0009375
renal intercalated cell
A cuboidal epithelial cell of the kidney that regulates acid/base balance.
CL:CVS
A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance.
Ceri
2013-03-06T01:42:03Z
CL:0005011
zebrafish_anatomy
ZFA:0009376
renal alpha-intercalated cell
A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance.
CL:CVS
true
true
An epithelial cell of the intrahepatic portion of the bile duct.
Ceri
2013-07-29T05:21:19Z
CL:0002538
zebrafish_anatomy
ZFA:0009379
intrahepatic bile duct epithelial cell
An epithelial cell of the intrahepatic portion of the bile duct.
GOC:tfm
Epithelial cell found in the ducts of the pancreas.
Ceri
2013-07-29T05:23:07Z
CL:0002079
zebrafish_anatomy
ZFA:0009380
pancreatic ductal cell
Epithelial cell found in the ducts of the pancreas.
GOC:tfm
true
true
An epithelial cell derived from endoderm.
Ceri
2013-08-02T04:25:16Z
CL:0002076
zebrafish_anatomy
ZFA:0009383
endo-epithelial cell
An epithelial cell derived from endoderm.
GOC:tfm
Epithelial cells derived from neural plate and neural crest.
neuroepithelial cell
CL:0000710
zebrafish_anatomy
ZFA:0009384
The term "neuroepithelial cell" is used to describe both this cell type and sensory epithelial cell (CL:0000098).
neurecto-epithelial cell
Epithelial cells derived from neural plate and neural crest.
GOC:tfm
An epithelial cell derived from ectoderm.
CL:0002077
zebrafish_anatomy
ZFA:0009385
ecto-epithelial cell
An epithelial cell derived from ectoderm.
FMA:69074
A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell).
CL:0002371
zebrafish_anatomy
ZFA:0009386
somatic cell
A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell).
GOC:tfm
ISBN:0721662544
A cell whose primary function is to support other cell types.
CL:0000630
zebrafish_anatomy
ZFA:0009387
supportive cell
A cell whose primary function is to support other cell types.
FB:ma
GOC:tfm
Epithelial cell derived from mesoderm or mesenchyme.
CL:0002078
epithelial mesenchymal cell
zebrafish_anatomy
ZFA:0009388
meso-epithelial cell
Epithelial cell derived from mesoderm or mesenchyme.
FMA:69076
GOC:tfm
Cell that is part of the kidney.
CL:1000497
zebrafish_anatomy
ZFA:0009389
kidney cell
Cell that is part of the kidney.
GOC:cvs
ORCiD:0000-0002-2244-7917
CL:1000500
zebrafish_anatomy
ZFA:0009390
kidney interstitial cell
CL:1000504
zebrafish_anatomy
ZFA:0009391
kidney medulla cell
A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.
CL:0002320
zebrafish_anatomy
ZFA:0009392
connective tissue cell
A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.
GOC:tfm
ISBN:0618947256
Lymphatic progenitor cells.
Ceri
2012-01-12T04:44:34Z
CL:0005020
zebrafish_anatomy
ZFA:0009393
Usually express Prox1, or prox1b.
lymphangioblast
Lymphatic progenitor cells.
CL:CVS
Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics.
Ceri
2012-01-12T05:01:22Z
CL:0005021
zebrafish_anatomy
ZFA:0009394
mesenchymal lymphangioblast
Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics.
PMID:15624319
PMID:18430230
Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells.
Ceri
2012-01-12T05:21:09Z
CL:0005022
parachordal lymphangioblast
zebrafish_anatomy
ZFA:0009395
vascular lymphangioblast
Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells.
CL:CVS
The neurons that utilize glycine as a neurotransmitter.
CL:1001509
zebrafish_anatomy
ZFA:0009396
glycinergic neuron
The neurons that utilize glycine as a neurotransmitter.
MP:0010385
An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts.
Ceri
2013-08-02T12:08:01Z
CL:1000488
epithelial cell of bile duct
zebrafish_anatomy
bile duct cells
ZFA:0009397
cholangiocyte
An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts.
PMID:16550043
PMID:18356246
Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants.
Ceri
2013-08-02T12:13:12Z
zebrafish_anatomy
ZFA:0009398
hepatoblast
Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants.
GOC:cvs
ORCiD:0000-0002-2244-7917
PMID:18356246
PMID:20483998
An epithelial cell of the intestine.
Ceri
2013-08-02T04:26:27Z
CL:0002563
zebrafish_anatomy
ZFA:0009399
intestinal epithelial cell
An epithelial cell of the intestine.
GOC:tfm
An epithelial cell of the esophagus.
Ceri
2013-08-02T04:32:14Z
CL:0002252
zebrafish_anatomy
ZFA:0009400
epithelial cell of esophagus
An epithelial cell of the esophagus.
GOC:tfm
A vertebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye.
Ceri
2017-09-01T15:46:37Z
CL:0011004
zebrafish_anatomy
ZFA:0009401
lens fiber cell
A vertebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye.
GOC:nv
Cell that is part of the heart valve.
ceriv
2020-12-08T09:32:56Z
CL:1000147
zebrafish_anatomy
ZFA:0009402
heart valve cell
Cell that is part of the heart valve.
CL:editor
Cells that secrete the extracellular matrix of the heart valve.
ceriv
2020-12-08T09:43:48Z
zebrafish_anatomy
VIC
ZFA:0009403
heart valve interstitial cell
Cells that secrete the extracellular matrix of the heart valve.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-191202-2
VIC
ZFIN:ZDB-PUB-191202-2
Endothelial cells that surround the heart valve extracellular matrix.
ceriv
2020-12-08T09:48:24Z
heart valve endocardial cell
zebrafish_anatomy
VEC
ZFA:0009404
heart valve endothelial cell
Endothelial cells that surround the heart valve extracellular matrix.
GOC:cvs
ORCID:0000-0002-2244-7917
ZFIN:ZDB-PUB-191202-2
heart valve endocardial cell
ZFIN:ZDB-PUB-200221-32
VEC
ZFIN:ZDB-PUB-191202-2
zebrafish_anatomy
ZFA:0100000
zebrafish anatomical entity
ZFIN:ZDB-STAGE-050211-1
ZFIN:ZDB-TERM-100331-2430
zebrafish_stages
ZFS:0000000
unknown
ZFIN:ZDB-STAGE-010723-4
ZFIN:ZDB-TERM-100331-2431
zebrafish_stages
ZFS:0000001
zygote:1-cell
ZFIN:ZDB-STAGE-010723-15
ZFIN:ZDB-TERM-100331-2432
zebrafish_stages
ZFS:0000002
cleavage:2-cell
ZFIN:ZDB-STAGE-010723-11
ZFIN:ZDB-TERM-100331-2433
zebrafish_stages
ZFS:0000003
cleavage:4-cell
ZFIN:ZDB-STAGE-010723-33
ZFIN:ZDB-TERM-100331-2434
zebrafish_stages
ZFS:0000004
cleavage:8-cell
ZFIN:ZDB-STAGE-010723-20
ZFIN:ZDB-TERM-100331-2435
zebrafish_stages
ZFS:0000005
cleavage:16-cell
ZFIN:ZDB-STAGE-010723-25
ZFIN:ZDB-TERM-100331-2436
zebrafish_stages
ZFS:0000006
cleavage:32-cell
ZFIN:ZDB-STAGE-010723-28
ZFIN:ZDB-TERM-100331-2437
zebrafish_stages
ZFS:0000007
cleavage:64-cell
ZFIN:ZDB-STAGE-010723-7
ZFIN:ZDB-TERM-100331-2438
zebrafish_stages
ZFS:0000008
blastula:128-cell
ZFIN:ZDB-STAGE-010723-1
ZFIN:ZDB-TERM-100331-2439
zebrafish_stages
ZFS:0000009
blastula:256-cell
ZFIN:ZDB-STAGE-010723-14
ZFIN:ZDB-TERM-100331-2440
zebrafish_stages
ZFS:0000010
blastula:512-cell
ZFIN:ZDB-STAGE-010723-22
ZFIN:ZDB-TERM-100331-2441
zebrafish_stages
ZFS:0000011
blastula:1k-cell
ZFIN:ZDB-STAGE-010723-27
ZFIN:ZDB-TERM-100331-2442
zebrafish_stages
ZFS:0000012
blastula:high
ZFIN:ZDB-STAGE-010723-24
ZFIN:ZDB-TERM-100331-2443
zebrafish_stages
ZFS:0000013
blastula:oblong
ZFIN:ZDB-STAGE-010723-21
ZFIN:ZDB-TERM-100331-2444
zebrafish_stages
ZFS:0000014
blastula:sphere
ZFIN:ZDB-STAGE-010723-19
ZFIN:ZDB-TERM-100331-2445
zebrafish_stages
ZFS:0000015
blastula:dome
ZFIN:ZDB-STAGE-010723-17
ZFIN:ZDB-TERM-100331-2446
zebrafish_stages
ZFS:0000016
blastula:30%-epiboly
ZFIN:ZDB-STAGE-010723-6
ZFIN:ZDB-TERM-100331-2447
zebrafish_stages
ZFS:0000017
gastrula:50%-epiboly
ZFIN:ZDB-STAGE-010723-3
ZFIN:ZDB-TERM-100331-2448
zebrafish_stages
ZFS:0000018
gastrula:germ-ring
ZFIN:ZDB-STAGE-010723-2
ZFIN:ZDB-TERM-100331-2449
zebrafish_stages
ZFS:0000019
gastrula:shield
ZFIN:ZDB-STAGE-010723-18
ZFIN:ZDB-TERM-100331-2450
zebrafish_stages
ZFS:0000020
gastrula:75%-epiboly
ZFIN:ZDB-STAGE-010723-29
ZFIN:ZDB-TERM-100331-2451
zebrafish_stages
ZFS:0000021
gastrula:90%-epiboly
ZFIN:ZDB-STAGE-010723-12
ZFIN:ZDB-TERM-100331-2452
zebrafish_stages
ZFS:0000022
gastrula:bud
ZFIN:ZDB-STAGE-010723-23
ZFIN:ZDB-TERM-100331-2453
zebrafish_stages
ZFS:0000023
segmentation:1-4 somites
ZFIN:ZDB-STAGE-010723-5
ZFIN:ZDB-TERM-100331-2454
zebrafish_stages
ZFS:0000024
segmentation:5-9 somites
ZFIN:ZDB-STAGE-020626-1
ZFIN:ZDB-TERM-100331-2455
zebrafish_stages
ZFS:0000025
segmentation:10-13 somites
ZFIN:ZDB-STAGE-010723-30
ZFIN:ZDB-TERM-100331-2456
zebrafish_stages
ZFS:0000026
segmentation:14-19 somites
ZFIN:ZDB-STAGE-010723-16
ZFIN:ZDB-TERM-100331-2457
zebrafish_stages
ZFS:0000027
segmentation:20-25 somites
ZFIN:ZDB-STAGE-010723-34
ZFIN:ZDB-TERM-100331-2458
zebrafish_stages
ZFS:0000028
segmentation:26+ somites
ZFIN:ZDB-STAGE-010723-10
ZFIN:ZDB-TERM-100331-2439
zebrafish_stages
ZFS:0000029
pharyngula:prim-5
ZFIN:ZDB-STAGE-010723-32
ZFIN:ZDB-TERM-100331-2460
zebrafish_stages
ZFS:0000030
pharyngula:prim-15
ZFIN:ZDB-STAGE-010723-13
ZFIN:ZDB-TERM-100331-2461
zebrafish_stages
ZFS:0000031
pharyngula:prim-25
ZFIN:ZDB-STAGE-010723-31
ZFIN:ZDB-TERM-100331-2462
zebrafish_stages
ZFS:0000032
pharyngula:high-pec
ZFIN:ZDB-STAGE-010723-9
ZFIN:ZDB-TERM-100331-2463
zebrafish_stages
ZFS:0000033
hatching:long-pec
ZFIN:ZDB-STAGE-010723-26
ZFIN:ZDB-TERM-100331-2464
zebrafish_stages
ZFS:0000034
hatching:pec-fin
ZFIN:ZDB-STAGE-010723-8
ZFIN:ZDB-TERM-100331-2465
zebrafish_stages
ZFS:0000035
larval:protruding-mouth
ZFIN:ZDB-STAGE-010723-35
ZFIN:ZDB-TERM-100331-2466
zebrafish_stages
ZFS:0000036
larval:day 4
ZFIN:ZDB-STAGE-010723-36
ZFIN:ZDB-TERM-100331-2467
zebrafish_stages
ZFS:0000037
larval:day 5
ZFIN:ZDB-STAGE-010723-37
ZFIN:ZDB-TERM-100331-2468
zebrafish_stages
ZFS:0000038
larval:day 6
ZFIN:ZDB-STAGE-010723-47
ZFIN:ZDB-TERM-100331-2469
zebrafish_stages
ZFS:0000039
larval:days 7-13
ZFIN:ZDB-STAGE-010723-48
ZFIN:ZDB-TERM-100331-2470
zebrafish_stages
ZFS:0000040
larval:days 14-20
ZFIN:ZDB-STAGE-010723-49
ZFIN:ZDB-TERM-100331-2471
zebrafish_stages
ZFS:0000041
larval:days 21-29
ZFIN:ZDB-STAGE-010723-51
ZFIN:ZDB-TERM-100331-2472
zebrafish_stages
ZFS:0000042
juvenile:days 30-44
ZFIN:ZDB-STAGE-010723-52
ZFIN:ZDB-TERM-100331-2473
zebrafish_stages
ZFS:0000043
juvenile:days 45-89
ZFIN:ZDB-STAGE-010723-39
ZFIN:ZDB-TERM-100331-2474
zebrafish_stages
ZFS:0000044
adult
zebrafish_stages
ZFS:0000045
blastula
zebrafish_stages
ZFS:0000046
cleavage
zebrafish_stages
ZFS:0000047
gastrula
zebrafish_stages
ZFS:0000048
larva
zebrafish_stages
ZFS:0000049
segmentation
zebrafish_stages
ZFS:0000050
pharyngula
zebrafish_stages
ZFS:0000051
juvenile
yvonne
2014-11-05T08:33:09Z
zebrafish_stages
ZFS:0007000
hatching
zebrafish_stages
ZFS:0100000
zebrafish stage